Query 044195
Match_columns 1024
No_of_seqs 573 out of 4634
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 21:35:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4.5E-45 1.5E-49 428.7 25.2 316 184-522 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 5.5E-37 1.9E-41 359.6 22.2 284 183-513 130-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 5.5E-35 1.9E-39 383.4 26.7 310 179-520 122-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.5E-32 5E-37 328.5 27.2 303 181-517 124-449 (591)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-29 4.9E-34 304.8 29.8 432 536-1019 30-556 (606)
6 3rgz_A Protein brassinosteroid 100.0 1.8E-30 6.3E-35 319.3 21.5 431 537-1019 199-715 (768)
7 3rgz_A Protein brassinosteroid 100.0 4.2E-30 1.4E-34 316.1 22.6 401 590-1019 197-691 (768)
8 3vq2_A TLR4, TOLL-like recepto 100.0 4E-29 1.4E-33 300.9 28.9 422 563-1019 32-532 (606)
9 3t6q_A CD180 antigen; protein- 100.0 8.7E-29 3E-33 297.9 28.6 448 535-1019 30-558 (606)
10 2z63_A TOLL-like receptor 4, v 100.0 1E-28 3.5E-33 295.3 27.4 429 536-1019 26-529 (570)
11 1ziw_A TOLL-like receptor 3; i 100.0 2.1E-28 7.1E-33 298.8 27.8 151 536-695 23-178 (680)
12 3t6q_A CD180 antigen; protein- 100.0 2.7E-28 9.3E-33 293.6 28.0 422 563-1018 33-533 (606)
13 4ecn_A Leucine-rich repeat pro 100.0 2.7E-29 9.2E-34 305.3 18.3 377 606-1022 437-873 (876)
14 4eco_A Uncharacterized protein 100.0 1E-29 3.5E-34 305.1 14.0 351 609-1022 239-633 (636)
15 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-27 4.1E-32 282.1 26.4 405 563-1019 21-479 (520)
16 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-27 6.3E-32 295.7 29.1 152 536-695 22-181 (844)
17 4eco_A Uncharacterized protein 100.0 1.2E-28 4.1E-33 295.8 16.2 407 563-1020 81-599 (636)
18 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-27 5.7E-32 283.2 24.0 440 536-1020 24-509 (549)
19 3j0a_A TOLL-like receptor 5; m 100.0 3.5E-27 1.2E-31 293.2 26.9 154 561-723 22-183 (844)
20 2z63_A TOLL-like receptor 4, v 100.0 1.9E-27 6.4E-32 284.3 22.0 415 563-1018 28-504 (570)
21 4ecn_A Leucine-rich repeat pro 99.9 4.3E-27 1.5E-31 286.0 19.1 345 585-968 440-840 (876)
22 1ziw_A TOLL-like receptor 3; i 99.9 7.6E-26 2.6E-30 276.1 27.0 133 538-680 49-186 (680)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.4E-25 8.4E-30 264.4 29.1 414 563-1019 52-508 (562)
24 2z81_A CD282 antigen, TOLL-lik 99.9 1.7E-25 5.7E-30 265.9 26.6 402 563-1018 26-483 (549)
25 1o6v_A Internalin A; bacterial 99.9 6.1E-25 2.1E-29 254.4 26.9 340 561-990 44-385 (466)
26 1o6v_A Internalin A; bacterial 99.9 3.4E-25 1.2E-29 256.5 21.8 340 537-966 45-386 (466)
27 2z7x_B TOLL-like receptor 1, v 99.9 4.2E-25 1.4E-29 260.3 21.5 382 593-1019 21-455 (520)
28 4g8a_A TOLL-like receptor 4; l 99.9 1.8E-23 6.2E-28 253.6 33.7 450 536-1019 50-578 (635)
29 1jl5_A Outer protein YOPM; leu 99.9 1.4E-24 4.8E-29 248.5 20.3 137 538-695 11-160 (454)
30 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-24 5.8E-29 248.0 19.0 313 558-965 37-349 (457)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.7E-24 2.3E-28 252.0 23.9 411 564-1019 32-484 (562)
32 3bz5_A Internalin-J, INLJ; leu 99.9 2.8E-24 9.6E-29 246.2 18.4 317 588-996 37-354 (457)
33 4fmz_A Internalin; leucine ric 99.9 3.6E-23 1.2E-27 230.1 21.2 303 591-1019 42-344 (347)
34 3v47_A TOLL-like receptor 5B a 99.9 4.8E-23 1.7E-27 238.4 19.8 124 563-693 30-159 (455)
35 1jl5_A Outer protein YOPM; leu 99.9 1.6E-22 5.6E-27 231.4 23.9 372 562-1020 10-408 (454)
36 3o6n_A APL1; leucine-rich repe 99.9 1.1E-22 3.8E-27 229.8 19.0 304 561-966 43-350 (390)
37 3v47_A TOLL-like receptor 5B a 99.9 2.5E-22 8.7E-27 232.4 21.6 131 536-675 28-165 (455)
38 4g8a_A TOLL-like receptor 4; l 99.9 6.9E-22 2.4E-26 239.6 25.6 426 563-1019 52-553 (635)
39 4fmz_A Internalin; leucine ric 99.9 1.5E-22 5E-27 225.1 18.0 302 558-944 39-344 (347)
40 2id5_A Lingo-1, leucine rich r 99.9 1.1E-21 3.9E-26 228.1 24.4 180 778-992 148-332 (477)
41 3oja_B Anopheles plasmodium-re 99.9 3.9E-22 1.3E-26 238.0 18.9 304 561-966 49-356 (597)
42 2id5_A Lingo-1, leucine rich r 99.8 2.5E-20 8.4E-25 216.8 21.6 124 563-694 32-158 (477)
43 3o6n_A APL1; leucine-rich repe 99.8 1.2E-20 4E-25 213.2 18.3 301 537-922 44-349 (390)
44 3oja_B Anopheles plasmodium-re 99.8 1.6E-20 5.4E-25 224.1 17.0 302 538-923 51-356 (597)
45 4fcg_A Uncharacterized protein 99.8 1.7E-20 5.7E-25 205.4 15.4 192 590-847 78-270 (328)
46 1xku_A Decorin; proteoglycan, 99.8 2.2E-19 7.6E-24 197.6 21.1 192 594-840 32-226 (330)
47 3ogk_B Coronatine-insensitive 99.8 6.1E-22 2.1E-26 237.6 -2.5 420 558-1017 68-547 (592)
48 3g06_A SSPH2 (leucine-rich rep 99.8 2.2E-18 7.6E-23 202.9 25.9 259 593-994 40-298 (622)
49 1ogq_A PGIP-2, polygalacturona 99.8 6.1E-20 2.1E-24 199.8 7.5 249 563-873 50-304 (313)
50 3ogk_B Coronatine-insensitive 99.8 2.7E-20 9.2E-25 223.3 4.5 389 561-990 110-548 (592)
51 2p1m_B Transport inhibitor res 99.8 2.7E-21 9.4E-26 232.1 -4.6 400 559-1020 62-518 (594)
52 1z7x_W Ribonuclease inhibitor; 99.8 1.5E-21 5.2E-26 226.3 -9.0 229 563-840 3-266 (461)
53 1xku_A Decorin; proteoglycan, 99.8 2.9E-18 1E-22 188.7 17.6 216 593-840 52-273 (330)
54 2ft3_A Biglycan; proteoglycan, 99.8 3.5E-18 1.2E-22 188.1 17.9 93 594-693 34-128 (332)
55 4fcg_A Uncharacterized protein 99.8 1.8E-18 6.3E-23 189.2 15.2 216 615-908 79-294 (328)
56 2ft3_A Biglycan; proteoglycan, 99.8 4.4E-18 1.5E-22 187.3 17.4 235 564-840 34-274 (332)
57 1ogq_A PGIP-2, polygalacturona 99.8 4.7E-19 1.6E-23 192.7 8.9 250 593-905 50-306 (313)
58 2p1m_B Transport inhibitor res 99.8 5.3E-21 1.8E-25 229.6 -8.3 368 560-967 102-518 (594)
59 3g06_A SSPH2 (leucine-rich rep 99.7 3.3E-17 1.1E-21 192.9 21.9 79 593-683 61-139 (622)
60 1z7x_W Ribonuclease inhibitor; 99.7 3.8E-20 1.3E-24 214.5 -7.5 355 537-944 2-409 (461)
61 2z66_A Variable lymphocyte rec 99.7 3.9E-17 1.3E-21 177.6 11.4 98 593-693 28-131 (306)
62 2z66_A Variable lymphocyte rec 99.7 6.2E-17 2.1E-21 176.0 11.1 223 563-841 28-259 (306)
63 2z80_A TOLL-like receptor 2, v 99.7 8.7E-17 3E-21 178.6 11.9 98 593-693 52-154 (353)
64 2z80_A TOLL-like receptor 2, v 99.7 1.1E-16 3.8E-21 177.7 12.4 125 563-695 52-181 (353)
65 3o53_A Protein LRIM1, AGAP0063 99.7 4E-17 1.4E-21 178.1 7.7 269 587-926 28-300 (317)
66 3zyi_A Leucine-rich repeat-con 99.7 4.4E-16 1.5E-20 179.2 15.5 219 593-869 75-299 (452)
67 3zyi_A Leucine-rich repeat-con 99.7 3.4E-16 1.2E-20 180.1 14.4 221 563-841 75-301 (452)
68 3zyj_A Leucine-rich repeat-con 99.7 7.9E-16 2.7E-20 176.3 16.5 219 593-869 64-288 (440)
69 3zyj_A Leucine-rich repeat-con 99.7 4.2E-16 1.4E-20 178.6 14.0 221 563-841 64-290 (440)
70 2qen_A Walker-type ATPase; unk 99.6 6.7E-15 2.3E-19 163.4 21.1 291 179-514 10-349 (350)
71 3o53_A Protein LRIM1, AGAP0063 99.6 2.5E-17 8.4E-22 179.7 1.1 260 593-925 10-275 (317)
72 1w5s_A Origin recognition comp 99.6 3.5E-15 1.2E-19 169.8 17.5 314 181-509 22-387 (412)
73 1ozn_A Reticulon 4 receptor; N 99.6 1E-15 3.5E-20 164.3 11.2 200 592-841 31-236 (285)
74 2xwt_C Thyrotropin receptor; s 99.6 8.6E-15 2.9E-19 152.5 17.3 203 794-1021 23-239 (239)
75 1wwl_A Monocyte differentiatio 99.6 1.3E-16 4.5E-21 173.5 2.6 77 615-693 93-178 (312)
76 1ozn_A Reticulon 4 receptor; N 99.6 2.1E-14 7E-19 154.1 19.7 212 786-1019 15-236 (285)
77 3oja_A Leucine-rich immune mol 99.6 4E-15 1.4E-19 171.9 15.0 216 774-1020 26-249 (487)
78 3oja_A Leucine-rich immune mol 99.6 5.9E-16 2E-20 178.8 7.9 244 590-904 31-276 (487)
79 1h6u_A Internalin H; cell adhe 99.6 1.9E-15 6.6E-20 163.6 10.7 190 591-841 39-228 (308)
80 2ast_B S-phase kinase-associat 99.6 2.4E-16 8.1E-21 174.1 0.8 233 593-910 70-312 (336)
81 2z62_A TOLL-like receptor 4, v 99.6 6.5E-15 2.2E-19 157.2 11.4 202 593-841 28-235 (276)
82 2fna_A Conserved hypothetical 99.6 6.3E-14 2.2E-18 156.1 19.5 290 179-513 11-356 (357)
83 1p9a_G Platelet glycoprotein I 99.6 1.7E-14 5.9E-19 154.4 13.7 200 589-841 6-206 (290)
84 2o6q_A Variable lymphocyte rec 99.5 4.2E-14 1.4E-18 150.2 14.8 196 594-841 17-216 (270)
85 1wwl_A Monocyte differentiatio 99.5 8.5E-16 2.9E-20 167.1 0.9 247 590-904 40-309 (312)
86 3rfs_A Internalin B, repeat mo 99.5 2.2E-14 7.5E-19 152.5 11.8 88 590-682 38-126 (272)
87 4ay9_X Follicle-stimulating ho 99.5 2.9E-13 9.9E-18 149.6 20.9 60 620-682 12-72 (350)
88 2xwt_C Thyrotropin receptor; s 99.5 8.1E-14 2.8E-18 145.1 14.7 72 606-681 23-97 (239)
89 1h6u_A Internalin H; cell adhe 99.5 2.5E-14 8.5E-19 154.9 11.2 193 559-819 37-229 (308)
90 3qfl_A MLA10; coiled-coil, (CC 99.5 1.4E-14 4.8E-19 128.3 6.9 79 8-88 2-82 (115)
91 2o6q_A Variable lymphocyte rec 99.5 3.9E-13 1.3E-17 142.7 19.2 190 783-991 17-216 (270)
92 2z62_A TOLL-like receptor 4, v 99.5 5.9E-14 2E-18 149.8 11.5 204 563-820 28-237 (276)
93 3rfs_A Internalin B, repeat mo 99.5 2.9E-14 9.9E-19 151.5 8.8 125 557-693 35-162 (272)
94 4glp_A Monocyte differentiatio 99.5 4.1E-14 1.4E-18 153.6 10.0 227 563-841 64-305 (310)
95 1p9a_G Platelet glycoprotein I 99.5 3.9E-13 1.3E-17 143.8 16.9 197 778-1019 6-206 (290)
96 4ay9_X Follicle-stimulating ho 99.5 6.8E-13 2.3E-17 146.6 18.9 214 781-1017 29-255 (350)
97 2ast_B S-phase kinase-associat 99.5 7.9E-15 2.7E-19 161.8 2.1 143 539-693 48-200 (336)
98 2ca6_A RAN GTPase-activating p 99.4 2.5E-15 8.7E-20 169.0 -3.7 85 559-650 28-132 (386)
99 2qby_B CDC6 homolog 3, cell di 99.4 1.8E-11 6.3E-16 137.4 25.5 290 181-496 20-339 (384)
100 2ca6_A RAN GTPase-activating p 99.4 2.3E-14 7.9E-19 161.2 1.0 242 586-842 25-315 (386)
101 2v1u_A Cell division control p 99.4 9.1E-12 3.1E-16 140.2 21.7 291 181-496 19-351 (387)
102 3m19_A Variable lymphocyte rec 99.4 1.6E-12 5.6E-17 136.2 13.3 172 593-841 14-190 (251)
103 1fnn_A CDC6P, cell division co 99.4 3.1E-11 1.1E-15 135.8 24.2 297 181-497 17-352 (389)
104 1m9s_A Internalin B; cell inva 99.4 5E-13 1.7E-17 157.2 9.4 171 590-820 40-210 (605)
105 1h6t_A Internalin B; cell adhe 99.3 2.1E-12 7.1E-17 138.3 11.3 169 591-819 44-212 (291)
106 4glp_A Monocyte differentiatio 99.3 2.1E-12 7.3E-17 140.0 10.5 83 782-870 91-179 (310)
107 1h6t_A Internalin B; cell adhe 99.3 1.2E-12 4.1E-17 140.2 8.3 181 600-841 31-211 (291)
108 3cvr_A Invasion plasmid antige 99.3 3.8E-12 1.3E-16 147.8 13.0 178 593-844 59-244 (571)
109 2qby_A CDC6 homolog 1, cell di 99.3 2.4E-11 8.2E-16 136.7 18.2 294 181-496 20-348 (386)
110 3m19_A Variable lymphocyte rec 99.3 3E-11 1E-15 126.5 16.7 174 782-992 14-191 (251)
111 1m9s_A Internalin B; cell inva 99.3 3.6E-12 1.2E-16 150.0 9.5 176 559-799 39-214 (605)
112 1xeu_A Internalin C; cellular 99.3 1.1E-12 3.8E-17 138.1 4.4 84 592-681 18-101 (263)
113 4ezg_A Putative uncharacterize 99.3 9.6E-12 3.3E-16 124.8 10.3 143 538-695 44-188 (197)
114 3goz_A Leucine-rich repeat-con 99.3 1.7E-12 5.7E-17 144.3 4.8 94 584-680 13-124 (362)
115 3cvr_A Invasion plasmid antige 99.3 5.1E-11 1.7E-15 138.4 16.6 186 782-1007 59-253 (571)
116 3goz_A Leucine-rich repeat-con 99.2 8.7E-13 3E-17 146.6 1.3 263 597-904 2-297 (362)
117 1njg_A DNA polymerase III subu 99.2 1.4E-10 4.6E-15 121.4 17.5 197 181-394 23-231 (250)
118 2ell_A Acidic leucine-rich nuc 99.2 2.1E-11 7.2E-16 118.8 7.9 125 563-697 24-156 (168)
119 2je0_A Acidic leucine-rich nuc 99.2 1.3E-11 4.5E-16 117.5 6.2 122 563-694 17-146 (149)
120 4ezg_A Putative uncharacterize 99.2 3.5E-11 1.2E-15 120.7 9.3 123 560-693 41-164 (197)
121 3e6j_A Variable lymphocyte rec 99.2 4.1E-11 1.4E-15 123.2 9.8 124 563-695 40-166 (229)
122 2ell_A Acidic leucine-rich nuc 99.2 3.7E-11 1.3E-15 117.1 8.6 137 536-683 22-165 (168)
123 2v9t_B SLIT homolog 2 protein 99.2 7.7E-11 2.6E-15 120.3 10.6 83 596-683 14-98 (220)
124 1a9n_A U2A', U2A'; complex (nu 99.2 2.9E-11 1E-15 118.7 7.1 129 558-698 14-150 (176)
125 2v9t_B SLIT homolog 2 protein 99.1 9.1E-11 3.1E-15 119.7 9.8 124 563-695 32-159 (220)
126 2chg_A Replication factor C sm 99.1 5.6E-10 1.9E-14 114.7 15.4 184 181-390 17-203 (226)
127 1xeu_A Internalin C; cellular 99.1 2.2E-10 7.4E-15 120.5 12.2 97 589-693 37-133 (263)
128 2v70_A SLIT-2, SLIT homolog 2 99.1 1.8E-10 6E-15 117.6 10.5 125 563-696 32-161 (220)
129 2xot_A Amphoterin-induced prot 99.1 7.4E-11 2.5E-15 130.8 7.8 93 596-693 21-117 (361)
130 2o6s_A Variable lymphocyte rec 99.1 2.4E-10 8.3E-15 115.7 10.7 124 563-695 28-155 (208)
131 4b8c_D Glucose-repressible alc 99.1 1.4E-10 4.6E-15 140.3 8.6 108 586-696 217-324 (727)
132 3e6j_A Variable lymphocyte rec 99.1 5E-10 1.7E-14 115.1 11.5 131 536-675 38-170 (229)
133 2o6s_A Variable lymphocyte rec 99.1 3.8E-10 1.3E-14 114.3 10.3 84 590-675 73-159 (208)
134 2je0_A Acidic leucine-rich nuc 99.1 1.5E-10 5.1E-15 110.2 6.7 128 536-673 15-149 (149)
135 2v70_A SLIT-2, SLIT homolog 2 99.0 3.4E-10 1.2E-14 115.4 9.2 109 559-675 53-164 (220)
136 1dce_A Protein (RAB geranylger 99.0 3.5E-10 1.2E-14 132.2 8.9 117 565-693 443-565 (567)
137 4b8c_D Glucose-repressible alc 99.0 4E-11 1.4E-15 144.9 0.7 119 557-684 218-336 (727)
138 1hqc_A RUVB; extended AAA-ATPa 99.0 1.8E-09 6E-14 117.9 13.2 268 181-495 12-324 (324)
139 1sxj_B Activator 1 37 kDa subu 99.0 2.4E-09 8.3E-14 116.8 12.3 186 181-392 21-211 (323)
140 1a9n_A U2A', U2A'; complex (nu 99.0 6.4E-10 2.2E-14 109.1 6.9 126 537-675 18-151 (176)
141 3sb4_A Hypothetical leucine ri 98.9 1.9E-09 6.5E-14 117.8 10.9 117 562-692 24-152 (329)
142 2xot_A Amphoterin-induced prot 98.9 1.8E-09 6E-14 119.6 10.2 124 563-695 39-170 (361)
143 2wfh_A SLIT homolog 2 protein 98.9 2.6E-09 8.8E-14 106.2 9.6 99 593-694 31-132 (193)
144 1dce_A Protein (RAB geranylger 98.9 1.1E-09 3.7E-14 128.0 7.9 97 594-695 442-540 (567)
145 1w8a_A SLIT protein; signaling 98.9 6.3E-09 2.1E-13 103.5 10.6 97 594-693 30-131 (192)
146 3sb4_A Hypothetical leucine ri 98.8 9.7E-09 3.3E-13 112.1 11.8 97 911-1015 225-328 (329)
147 2wfh_A SLIT homolog 2 protein 98.8 1.2E-08 4.2E-13 101.3 11.3 94 596-694 13-108 (193)
148 2r9u_A Variable lymphocyte rec 98.8 6.9E-09 2.4E-13 101.1 8.7 81 593-675 33-116 (174)
149 1w8a_A SLIT protein; signaling 98.8 6.8E-09 2.3E-13 103.2 8.5 105 564-675 30-137 (192)
150 1ds9_A Outer arm dynein; leuci 98.8 7.4E-11 2.5E-15 118.4 -6.7 85 588-675 65-151 (198)
151 1ds9_A Outer arm dynein; leuci 98.8 4.2E-11 1.4E-15 120.2 -8.6 103 587-694 42-146 (198)
152 3g39_A Variable lymphocyte rec 98.8 1E-08 3.4E-13 99.6 8.6 93 596-693 12-107 (170)
153 2o6r_A Variable lymphocyte rec 98.8 1.2E-08 4E-13 100.2 8.8 98 593-693 28-129 (177)
154 3te6_A Regulatory protein SIR3 98.8 6.4E-08 2.2E-12 102.3 14.2 174 181-357 20-211 (318)
155 2r9u_A Variable lymphocyte rec 98.7 1.5E-08 5E-13 98.8 8.4 98 596-698 15-115 (174)
156 2o6r_A Variable lymphocyte rec 98.7 2.2E-08 7.4E-13 98.2 9.2 106 562-675 27-135 (177)
157 1iqp_A RFCS; clamp loader, ext 98.7 4.5E-08 1.5E-12 106.9 12.8 182 182-392 26-213 (327)
158 3g39_A Variable lymphocyte rec 98.7 4.3E-08 1.5E-12 95.1 8.4 82 592-675 29-113 (170)
159 1jr3_A DNA polymerase III subu 98.6 2.2E-07 7.5E-12 103.5 14.6 194 182-391 17-221 (373)
160 2chq_A Replication factor C sm 98.6 1.6E-07 5.3E-12 102.1 12.8 181 181-390 17-203 (319)
161 3e4g_A ATP synthase subunit S, 98.5 1.2E-07 4E-12 90.3 5.8 85 912-996 61-155 (176)
162 1jbk_A CLPB protein; beta barr 98.5 3.7E-07 1.3E-11 90.8 9.8 44 182-231 23-66 (195)
163 4fs7_A Uncharacterized protein 98.5 6.5E-06 2.2E-10 92.1 20.5 76 928-1013 315-393 (394)
164 3pfi_A Holliday junction ATP-d 98.4 6.8E-06 2.3E-10 89.8 18.9 177 181-390 29-226 (338)
165 3bos_A Putative DNA replicatio 98.4 1.6E-07 5.6E-12 97.3 5.1 173 182-391 29-217 (242)
166 2ifg_A High affinity nerve gro 98.4 5.8E-07 2E-11 98.9 9.4 85 589-675 27-114 (347)
167 1sxj_D Activator 1 41 kDa subu 98.4 1.3E-06 4.3E-11 96.5 11.9 194 181-390 37-234 (353)
168 2ifg_A High affinity nerve gro 98.3 7E-07 2.4E-11 98.2 8.0 97 597-696 12-111 (347)
169 3uk6_A RUVB-like 2; hexameric 98.3 8.8E-06 3E-10 90.1 16.7 198 181-390 44-302 (368)
170 2z4s_A Chromosomal replication 98.3 3.7E-06 1.2E-10 94.7 13.5 181 208-409 130-331 (440)
171 1a5t_A Delta prime, HOLB; zinc 98.3 1E-05 3.6E-10 87.7 16.6 171 187-390 8-204 (334)
172 3pvs_A Replication-associated 98.3 3.9E-06 1.3E-10 94.2 13.4 178 181-390 26-214 (447)
173 4fdw_A Leucine rich hypothetic 98.3 1.4E-05 4.7E-10 89.0 17.6 98 588-693 131-231 (401)
174 4fs7_A Uncharacterized protein 98.3 2.3E-05 8E-10 87.5 19.2 120 889-1017 252-375 (394)
175 3e4g_A ATP synthase subunit S, 98.2 5.8E-07 2E-11 85.5 4.3 86 933-1022 61-153 (176)
176 4fdw_A Leucine rich hypothetic 98.2 6.2E-05 2.1E-09 83.6 21.3 256 591-922 111-380 (401)
177 1d2n_A N-ethylmaleimide-sensit 98.2 2.5E-05 8.7E-10 82.1 17.1 195 182-408 34-259 (272)
178 2qz4_A Paraplegin; AAA+, SPG7, 98.2 2.5E-05 8.7E-10 81.7 16.9 187 181-390 6-221 (262)
179 1sxj_E Activator 1 40 kDa subu 98.2 3.4E-06 1.2E-10 92.9 10.6 197 181-391 14-237 (354)
180 2ra8_A Uncharacterized protein 98.2 1.1E-06 3.6E-11 96.0 6.3 14 826-839 135-148 (362)
181 3h4m_A Proteasome-activating n 98.2 4.2E-06 1.4E-10 89.0 10.5 185 181-390 17-230 (285)
182 1sxj_A Activator 1 95 kDa subu 98.1 8.3E-06 2.9E-10 94.1 12.5 197 181-391 39-253 (516)
183 3syl_A Protein CBBX; photosynt 98.1 2.1E-05 7.1E-10 84.7 14.0 159 182-358 32-218 (309)
184 3n70_A Transport activator; si 98.1 3.1E-06 1E-10 79.3 6.2 114 182-326 2-115 (145)
185 3u61_B DNA polymerase accessor 98.1 1.1E-05 3.6E-10 87.6 11.4 176 181-386 26-211 (324)
186 3un9_A NLR family member X1; l 98.0 9.6E-07 3.3E-11 97.3 0.9 83 591-675 99-194 (372)
187 1xwi_A SKD1 protein; VPS4B, AA 98.0 0.00027 9.3E-09 75.9 19.8 189 181-392 12-224 (322)
188 1sxj_C Activator 1 40 kDa subu 98.0 3.3E-05 1.1E-09 84.2 12.7 175 182-388 26-209 (340)
189 1l8q_A Chromosomal replication 98.0 4E-05 1.4E-09 82.9 13.2 168 190-385 23-202 (324)
190 3d8b_A Fidgetin-like protein 1 98.0 8.9E-05 3E-09 81.1 15.9 188 181-393 84-297 (357)
191 2p65_A Hypothetical protein PF 98.0 6.4E-06 2.2E-10 81.2 6.1 43 182-230 23-65 (187)
192 3eie_A Vacuolar protein sortin 98.0 0.0001 3.5E-09 79.5 16.0 187 181-392 18-229 (322)
193 3un9_A NLR family member X1; l 98.0 2.2E-06 7.7E-11 94.4 2.6 58 592-650 154-221 (372)
194 2qp9_X Vacuolar protein sortin 98.0 0.00015 5.2E-09 79.0 17.2 187 181-391 51-261 (355)
195 3pxg_A Negative regulator of g 97.9 3E-05 1E-09 88.1 10.5 145 181-357 180-338 (468)
196 2ra8_A Uncharacterized protein 97.9 3.1E-06 1.1E-10 92.3 2.2 58 930-991 276-341 (362)
197 3ec2_A DNA replication protein 97.9 1.9E-05 6.6E-10 77.1 7.4 121 186-326 19-142 (180)
198 2gno_A DNA polymerase III, gam 97.8 5.5E-05 1.9E-09 80.2 10.8 149 185-357 1-152 (305)
199 2zan_A Vacuolar protein sortin 97.8 0.00033 1.1E-08 78.9 17.8 188 181-391 134-345 (444)
200 3b9p_A CG5977-PA, isoform A; A 97.8 0.00026 8.8E-09 75.5 16.0 187 181-391 21-233 (297)
201 3vfd_A Spastin; ATPase, microt 97.8 0.00034 1.1E-08 77.7 16.2 187 181-391 115-326 (389)
202 3cf0_A Transitional endoplasmi 97.7 0.00036 1.2E-08 74.3 15.2 181 181-386 15-223 (301)
203 3co5_A Putative two-component 97.7 1.7E-05 5.8E-10 74.0 4.2 110 182-326 5-115 (143)
204 4fcw_A Chaperone protein CLPB; 97.7 9.3E-05 3.2E-09 79.6 10.7 121 182-311 18-143 (311)
205 4gt6_A Cell surface protein; l 97.7 0.00064 2.2E-08 75.7 17.7 106 559-674 59-170 (394)
206 1qvr_A CLPB protein; coiled co 97.7 3.1E-05 1E-09 95.3 7.4 152 181-356 170-344 (854)
207 2w58_A DNAI, primosome compone 97.7 4.2E-05 1.4E-09 76.3 6.6 119 188-326 36-158 (202)
208 4b4t_K 26S protease regulatory 97.7 0.00022 7.6E-09 78.4 12.6 178 181-383 172-378 (428)
209 4gt6_A Cell surface protein; l 97.6 0.0029 9.8E-08 70.4 20.9 82 588-673 58-146 (394)
210 2bjv_A PSP operon transcriptio 97.6 7.5E-05 2.6E-09 78.2 7.4 62 182-249 7-68 (265)
211 1io0_A Tropomodulin; LRR prote 97.6 4.6E-05 1.6E-09 74.6 5.4 109 559-675 32-162 (185)
212 3hu3_A Transitional endoplasmi 97.6 0.00019 6.5E-09 81.3 11.1 185 181-390 204-414 (489)
213 1in4_A RUVB, holliday junction 97.6 0.0024 8.1E-08 69.0 19.1 177 181-390 25-222 (334)
214 1ojl_A Transcriptional regulat 97.6 8.1E-05 2.8E-09 79.2 7.3 46 181-230 2-47 (304)
215 4b4t_J 26S protease regulatory 97.6 0.00052 1.8E-08 74.3 13.6 179 181-384 148-354 (405)
216 2c9o_A RUVB-like 1; hexameric 97.6 0.00028 9.5E-09 80.0 12.1 97 289-390 297-409 (456)
217 4b4t_L 26S protease subunit RP 97.6 0.00064 2.2E-08 75.0 14.2 179 181-384 181-387 (437)
218 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00052 1.8E-08 83.6 14.9 154 181-356 186-361 (758)
219 3rw6_A Nuclear RNA export fact 97.5 5.8E-05 2E-09 77.7 4.7 79 590-670 167-257 (267)
220 3pxi_A Negative regulator of g 97.5 0.00022 7.4E-09 86.8 10.5 145 181-357 180-338 (758)
221 1lv7_A FTSH; alpha/beta domain 97.5 0.0012 4.1E-08 68.4 14.7 184 181-389 12-223 (257)
222 4h09_A Hypothetical leucine ri 97.4 0.0031 1.1E-07 69.7 18.0 74 594-673 47-122 (379)
223 1ofh_A ATP-dependent HSL prote 97.4 0.00055 1.9E-08 73.4 11.3 50 181-230 15-72 (310)
224 4b4t_M 26S protease regulatory 97.4 0.00069 2.4E-08 74.6 11.8 177 181-383 181-386 (434)
225 4b4t_I 26S protease regulatory 97.4 0.00093 3.2E-08 72.5 12.3 177 181-383 182-387 (437)
226 1io0_A Tropomodulin; LRR prote 97.4 6.6E-05 2.3E-09 73.5 2.7 109 583-693 26-156 (185)
227 2kjq_A DNAA-related protein; s 97.3 5.3E-05 1.8E-09 70.9 1.8 39 208-248 36-74 (149)
228 2ce7_A Cell division protein F 97.3 0.00075 2.6E-08 75.7 11.4 179 181-384 16-221 (476)
229 3pxi_A Negative regulator of g 97.3 0.00022 7.7E-09 86.6 7.6 155 181-356 491-674 (758)
230 4b4t_H 26S protease regulatory 97.3 0.00047 1.6E-08 75.6 8.7 178 181-383 209-414 (467)
231 2r62_A Cell division protease 97.3 0.0002 6.9E-09 75.0 5.6 157 181-357 11-196 (268)
232 3cf2_A TER ATPase, transitiona 97.2 0.003 1E-07 75.1 15.1 179 181-384 204-407 (806)
233 3rw6_A Nuclear RNA export fact 97.1 0.00021 7.1E-09 73.6 3.8 80 614-695 167-258 (267)
234 2qgz_A Helicase loader, putati 97.0 0.00031 1E-08 74.8 3.5 55 187-246 134-189 (308)
235 1r6b_X CLPA protein; AAA+, N-t 97.0 0.0012 4E-08 80.4 8.9 135 181-326 458-607 (758)
236 3t15_A Ribulose bisphosphate c 97.0 0.002 6.9E-08 68.0 9.6 25 206-230 34-58 (293)
237 3nbx_X ATPase RAVA; AAA+ ATPas 96.9 0.0081 2.8E-07 67.9 14.8 41 183-231 24-64 (500)
238 1qvr_A CLPB protein; coiled co 96.9 0.0019 6.6E-08 79.3 10.2 135 182-326 559-710 (854)
239 4h09_A Hypothetical leucine ri 96.9 0.023 7.9E-07 62.6 17.6 103 557-672 40-143 (379)
240 3m6a_A ATP-dependent protease 96.9 0.0015 5.2E-08 75.4 8.2 164 181-356 81-265 (543)
241 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.00062 2.1E-08 71.0 4.0 68 208-297 123-192 (331)
242 2r44_A Uncharacterized protein 96.8 0.00085 2.9E-08 72.7 4.8 151 182-358 28-199 (331)
243 2cvh_A DNA repair and recombin 96.6 0.0076 2.6E-07 60.6 10.0 85 207-297 19-115 (220)
244 2b8t_A Thymidine kinase; deoxy 96.5 0.0022 7.4E-08 64.0 5.0 114 207-328 11-127 (223)
245 1ypw_A Transitional endoplasmi 96.5 0.015 5E-07 70.5 13.2 156 181-357 204-385 (806)
246 1ixz_A ATP-dependent metallopr 96.5 0.011 3.9E-07 60.9 10.6 179 181-384 16-221 (254)
247 2dhr_A FTSH; AAA+ protein, hex 96.4 0.026 8.7E-07 63.7 14.0 175 181-384 31-236 (499)
248 3hr8_A Protein RECA; alpha and 96.4 0.0085 2.9E-07 64.3 9.6 84 207-297 60-149 (356)
249 1um8_A ATP-dependent CLP prote 96.4 0.0099 3.4E-07 65.4 10.3 23 208-230 72-94 (376)
250 3io5_A Recombination and repai 96.2 0.013 4.5E-07 60.7 9.2 81 210-297 30-121 (333)
251 1iy2_A ATP-dependent metallopr 96.1 0.038 1.3E-06 57.7 12.7 180 180-384 39-245 (278)
252 2x8a_A Nuclear valosin-contain 96.1 0.022 7.7E-07 59.1 10.6 126 211-357 47-191 (274)
253 1xp8_A RECA protein, recombina 96.1 0.016 5.6E-07 62.6 9.6 82 208-296 74-161 (366)
254 1g5t_A COB(I)alamin adenosyltr 95.9 0.0048 1.7E-07 59.4 3.8 117 209-327 29-163 (196)
255 2zr9_A Protein RECA, recombina 95.8 0.023 8E-07 61.1 9.5 84 207-297 60-149 (349)
256 1v5w_A DMC1, meiotic recombina 95.8 0.03 1E-06 60.4 10.1 57 207-264 121-181 (343)
257 1jr3_D DNA polymerase III, del 95.8 0.041 1.4E-06 59.5 11.2 156 208-389 18-183 (343)
258 1n0w_A DNA repair protein RAD5 95.7 0.016 5.6E-07 59.2 7.6 90 207-297 23-129 (243)
259 1u94_A RECA protein, recombina 95.7 0.026 8.8E-07 60.8 8.9 84 207-297 62-151 (356)
260 2z43_A DNA repair and recombin 95.6 0.026 8.8E-07 60.4 8.7 89 207-296 106-212 (324)
261 2px0_A Flagellar biosynthesis 95.6 0.029 9.8E-07 58.9 8.6 87 207-296 104-191 (296)
262 2i1q_A DNA repair and recombin 95.5 0.019 6.6E-07 61.5 7.2 89 207-296 97-213 (322)
263 1rz3_A Hypothetical protein rb 95.5 0.015 5.3E-07 57.3 5.9 42 186-230 3-44 (201)
264 3ice_A Transcription terminati 95.2 0.012 4.1E-07 62.6 4.1 85 207-296 173-270 (422)
265 2cbz_A Multidrug resistance-as 95.1 0.12 4.2E-06 52.1 11.3 23 209-231 32-54 (237)
266 1vma_A Cell division protein F 95.1 0.081 2.8E-06 55.6 10.1 88 207-297 103-196 (306)
267 2w0m_A SSO2452; RECA, SSPF, un 95.0 0.066 2.3E-06 54.1 9.1 38 209-248 24-61 (235)
268 3cf2_A TER ATPase, transitiona 94.9 0.084 2.9E-06 62.8 10.7 97 181-297 477-580 (806)
269 3bh0_A DNAB-like replicative h 94.8 0.075 2.6E-06 56.4 9.3 52 207-262 67-118 (315)
270 3dm5_A SRP54, signal recogniti 94.7 0.24 8.1E-06 54.5 12.9 24 207-230 99-122 (443)
271 2pze_A Cystic fibrosis transme 94.6 0.24 8.2E-06 49.7 11.9 23 209-231 35-57 (229)
272 3tqc_A Pantothenate kinase; bi 94.6 0.092 3.2E-06 55.4 9.0 46 183-230 69-114 (321)
273 4a74_A DNA repair and recombin 94.4 0.089 3.1E-06 53.0 8.4 45 207-251 24-72 (231)
274 3lda_A DNA repair protein RAD5 94.4 0.081 2.8E-06 57.9 8.4 57 207-264 177-237 (400)
275 3rfe_A Platelet glycoprotein I 94.4 0.052 1.8E-06 48.9 5.8 51 597-650 12-65 (130)
276 1pzn_A RAD51, DNA repair and r 94.4 0.085 2.9E-06 56.8 8.4 90 207-297 130-241 (349)
277 3jvv_A Twitching mobility prot 94.3 0.024 8.1E-07 61.1 3.9 110 209-330 124-234 (356)
278 2ga8_A Hypothetical 39.9 kDa p 94.3 0.035 1.2E-06 58.8 5.1 45 184-230 2-46 (359)
279 1zp6_A Hypothetical protein AT 94.3 0.026 8.8E-07 55.1 3.9 24 207-230 8-31 (191)
280 3c8u_A Fructokinase; YP_612366 94.2 0.036 1.2E-06 54.9 4.8 25 206-230 20-44 (208)
281 1qhx_A CPT, protein (chloramph 94.2 0.021 7.3E-07 55.0 3.0 22 209-230 4-25 (178)
282 2dr3_A UPF0273 protein PH0284; 94.2 0.16 5.4E-06 51.8 9.8 39 208-248 23-61 (247)
283 2orw_A Thymidine kinase; TMTK, 94.2 0.0048 1.6E-07 59.8 -1.7 22 209-230 4-25 (184)
284 1ypw_A Transitional endoplasmi 94.1 0.013 4.4E-07 71.0 1.5 157 181-357 477-661 (806)
285 1odf_A YGR205W, hypothetical 3 94.1 0.039 1.3E-06 57.7 5.0 25 206-230 29-53 (290)
286 4a1f_A DNAB helicase, replicat 94.1 0.12 4.2E-06 54.8 8.8 52 208-263 46-97 (338)
287 1gvn_B Zeta; postsegregational 94.0 0.053 1.8E-06 56.7 5.7 41 189-230 15-55 (287)
288 3lw7_A Adenylate kinase relate 94.0 0.026 8.9E-07 54.2 3.1 20 209-228 2-21 (179)
289 1ly1_A Polynucleotide kinase; 94.0 0.03 1E-06 54.1 3.5 22 209-230 3-24 (181)
290 3kb2_A SPBC2 prophage-derived 93.9 0.026 8.9E-07 54.0 3.0 22 209-230 2-23 (173)
291 3uie_A Adenylyl-sulfate kinase 93.9 0.034 1.2E-06 54.8 3.9 24 207-230 24-47 (200)
292 2ffh_A Protein (FFH); SRP54, s 93.9 0.21 7.2E-06 54.9 10.4 23 208-230 98-120 (425)
293 3vaa_A Shikimate kinase, SK; s 93.9 0.028 9.7E-07 55.3 3.2 23 208-230 25-47 (199)
294 1cr0_A DNA primase/helicase; R 93.9 0.23 7.7E-06 52.3 10.4 38 208-247 35-73 (296)
295 3hws_A ATP-dependent CLP prote 93.8 0.037 1.3E-06 60.4 4.3 49 182-230 16-73 (363)
296 3upu_A ATP-dependent DNA helic 93.8 0.1 3.4E-06 58.9 7.9 108 210-329 47-167 (459)
297 1tue_A Replication protein E1; 93.7 0.043 1.5E-06 53.0 3.9 38 188-230 43-80 (212)
298 1kag_A SKI, shikimate kinase I 93.7 0.026 9.1E-07 54.0 2.5 22 209-230 5-26 (173)
299 1sky_E F1-ATPase, F1-ATP synth 93.7 0.12 4E-06 57.1 7.8 87 209-296 152-254 (473)
300 1kgd_A CASK, peripheral plasma 93.6 0.037 1.3E-06 53.4 3.4 23 208-230 5-27 (180)
301 2p5t_B PEZT; postsegregational 93.6 0.056 1.9E-06 55.5 4.9 42 188-230 13-54 (253)
302 3kl4_A SRP54, signal recogniti 93.6 0.19 6.4E-06 55.4 9.3 24 207-230 96-119 (433)
303 3trf_A Shikimate kinase, SK; a 93.6 0.034 1.2E-06 53.9 3.0 23 208-230 5-27 (185)
304 3e70_C DPA, signal recognition 93.5 0.27 9.1E-06 52.2 10.1 25 206-230 127-151 (328)
305 2rhm_A Putative kinase; P-loop 93.5 0.044 1.5E-06 53.5 3.9 24 207-230 4-27 (193)
306 1zu4_A FTSY; GTPase, signal re 93.5 0.23 7.9E-06 52.6 9.6 24 207-230 104-127 (320)
307 1knq_A Gluconate kinase; ALFA/ 93.5 0.048 1.7E-06 52.3 4.0 24 207-230 7-30 (175)
308 1ls1_A Signal recognition part 93.5 0.21 7.2E-06 52.3 9.2 86 208-296 98-189 (295)
309 1j8m_F SRP54, signal recogniti 93.4 0.22 7.5E-06 52.1 9.2 88 208-297 98-190 (297)
310 4eun_A Thermoresistant glucoki 93.3 0.04 1.4E-06 54.2 3.2 24 207-230 28-51 (200)
311 1nks_A Adenylate kinase; therm 93.3 0.047 1.6E-06 53.3 3.6 22 209-230 2-23 (194)
312 3tau_A Guanylate kinase, GMP k 93.2 0.045 1.6E-06 54.2 3.4 25 207-231 7-31 (208)
313 3asz_A Uridine kinase; cytidin 93.1 0.053 1.8E-06 53.9 3.8 24 207-230 5-28 (211)
314 4gp7_A Metallophosphoesterase; 93.1 0.047 1.6E-06 52.1 3.2 23 208-230 9-31 (171)
315 2yhs_A FTSY, cell division pro 93.1 0.22 7.6E-06 55.3 8.9 42 207-251 292-333 (503)
316 2qt1_A Nicotinamide riboside k 93.1 0.067 2.3E-06 52.9 4.4 24 207-230 20-43 (207)
317 3tr0_A Guanylate kinase, GMP k 93.1 0.049 1.7E-06 53.8 3.4 22 209-230 8-29 (205)
318 1uf9_A TT1252 protein; P-loop, 93.0 0.059 2E-06 53.1 3.9 25 206-230 6-30 (203)
319 2ze6_A Isopentenyl transferase 93.0 0.05 1.7E-06 55.8 3.5 22 209-230 2-23 (253)
320 3cmu_A Protein RECA, recombina 93.0 0.17 5.7E-06 66.0 8.9 84 207-297 1426-1515(2050)
321 1fx0_B ATP synthase beta chain 93.0 0.19 6.6E-06 55.5 8.2 89 207-296 164-275 (498)
322 3rfe_A Platelet glycoprotein I 93.0 0.11 3.8E-06 46.7 5.4 53 620-675 11-66 (130)
323 2yvu_A Probable adenylyl-sulfa 93.0 0.092 3.2E-06 50.8 5.2 25 206-230 11-35 (186)
324 2bdt_A BH3686; alpha-beta prot 93.0 0.053 1.8E-06 52.8 3.5 22 209-230 3-24 (189)
325 3iij_A Coilin-interacting nucl 93.0 0.041 1.4E-06 53.0 2.6 23 208-230 11-33 (180)
326 2xxa_A Signal recognition part 93.0 0.26 9E-06 54.5 9.3 25 206-230 98-122 (433)
327 2j37_W Signal recognition part 92.9 0.62 2.1E-05 52.4 12.4 25 206-230 99-123 (504)
328 1y63_A LMAJ004144AAA protein; 92.9 0.053 1.8E-06 52.5 3.3 24 207-230 9-32 (184)
329 3t61_A Gluconokinase; PSI-biol 92.9 0.044 1.5E-06 54.0 2.7 23 208-230 18-40 (202)
330 1ye8_A Protein THEP1, hypothet 92.9 0.055 1.9E-06 51.9 3.2 22 210-231 2-23 (178)
331 2plr_A DTMP kinase, probable t 92.8 0.11 3.9E-06 51.4 5.8 22 209-230 5-26 (213)
332 1via_A Shikimate kinase; struc 92.8 0.042 1.4E-06 52.7 2.5 21 210-230 6-26 (175)
333 1ukz_A Uridylate kinase; trans 92.8 0.068 2.3E-06 52.7 4.0 25 206-230 13-37 (203)
334 2qor_A Guanylate kinase; phosp 92.8 0.047 1.6E-06 53.9 2.8 24 207-230 11-34 (204)
335 3umf_A Adenylate kinase; rossm 92.8 0.065 2.2E-06 53.0 3.7 25 206-230 27-51 (217)
336 3a00_A Guanylate kinase, GMP k 92.8 0.043 1.5E-06 53.2 2.4 22 209-230 2-23 (186)
337 1kht_A Adenylate kinase; phosp 92.7 0.056 1.9E-06 52.7 3.2 22 209-230 4-25 (192)
338 1tev_A UMP-CMP kinase; ploop, 92.7 0.06 2.1E-06 52.6 3.5 23 208-230 3-25 (196)
339 2j41_A Guanylate kinase; GMP, 92.7 0.058 2E-06 53.4 3.4 23 208-230 6-28 (207)
340 1zuh_A Shikimate kinase; alpha 92.7 0.053 1.8E-06 51.5 3.0 24 207-230 6-29 (168)
341 2ck3_D ATP synthase subunit be 92.7 0.29 9.9E-06 53.8 9.0 99 192-296 142-262 (482)
342 1jjv_A Dephospho-COA kinase; P 92.7 0.063 2.1E-06 53.1 3.6 22 209-230 3-24 (206)
343 2c95_A Adenylate kinase 1; tra 92.6 0.062 2.1E-06 52.6 3.4 23 208-230 9-31 (196)
344 1nn5_A Similar to deoxythymidy 92.6 0.14 4.8E-06 50.8 6.1 23 208-230 9-31 (215)
345 3cm0_A Adenylate kinase; ATP-b 92.6 0.072 2.4E-06 51.6 3.7 23 208-230 4-26 (186)
346 2if2_A Dephospho-COA kinase; a 92.5 0.065 2.2E-06 52.9 3.4 21 210-230 3-23 (204)
347 1g8p_A Magnesium-chelatase 38 92.5 0.049 1.7E-06 59.2 2.7 44 181-230 24-67 (350)
348 3ney_A 55 kDa erythrocyte memb 92.5 0.071 2.4E-06 51.7 3.5 24 207-230 18-41 (197)
349 3a4m_A L-seryl-tRNA(SEC) kinas 92.5 0.07 2.4E-06 55.0 3.6 23 208-230 4-26 (260)
350 2cdn_A Adenylate kinase; phosp 92.5 0.072 2.5E-06 52.4 3.6 24 207-230 19-42 (201)
351 1qf9_A UMP/CMP kinase, protein 92.4 0.088 3E-06 51.3 4.2 24 207-230 5-28 (194)
352 2q6t_A DNAB replication FORK h 92.4 0.45 1.6E-05 53.2 10.6 53 207-262 199-251 (444)
353 2z0h_A DTMP kinase, thymidylat 92.4 0.15 5.2E-06 49.7 6.0 21 210-230 2-22 (197)
354 2iyv_A Shikimate kinase, SK; t 92.4 0.048 1.6E-06 52.8 2.2 22 209-230 3-24 (184)
355 1ex7_A Guanylate kinase; subst 92.4 0.039 1.3E-06 53.1 1.5 22 209-230 2-23 (186)
356 1xjc_A MOBB protein homolog; s 92.4 0.066 2.3E-06 50.4 3.1 24 207-230 3-26 (169)
357 3e1s_A Exodeoxyribonuclease V, 92.4 0.17 5.9E-06 58.4 7.2 107 209-328 205-317 (574)
358 2pez_A Bifunctional 3'-phospho 92.4 0.077 2.6E-06 51.0 3.6 24 207-230 4-27 (179)
359 1cke_A CK, MSSA, protein (cyti 92.3 0.067 2.3E-06 53.8 3.2 22 209-230 6-27 (227)
360 1lvg_A Guanylate kinase, GMP k 92.3 0.055 1.9E-06 53.1 2.5 22 209-230 5-26 (198)
361 2jaq_A Deoxyguanosine kinase; 92.3 0.069 2.4E-06 52.6 3.2 21 210-230 2-22 (205)
362 2pbr_A DTMP kinase, thymidylat 92.2 0.18 6.1E-06 49.1 6.2 21 210-230 2-22 (195)
363 2bwj_A Adenylate kinase 5; pho 92.2 0.069 2.4E-06 52.4 3.2 22 209-230 13-34 (199)
364 3aez_A Pantothenate kinase; tr 92.2 0.081 2.8E-06 55.9 3.8 25 206-230 88-112 (312)
365 2r6a_A DNAB helicase, replicat 92.2 0.37 1.3E-05 54.1 9.5 51 207-260 202-252 (454)
366 1e6c_A Shikimate kinase; phosp 92.2 0.057 2E-06 51.6 2.4 22 209-230 3-24 (173)
367 1uj2_A Uridine-cytidine kinase 92.2 0.08 2.7E-06 54.3 3.6 25 206-230 20-44 (252)
368 1htw_A HI0065; nucleotide-bind 92.1 0.093 3.2E-06 49.1 3.7 24 207-230 32-55 (158)
369 1g41_A Heat shock protein HSLU 92.1 0.1 3.4E-06 57.6 4.5 50 181-230 15-72 (444)
370 2bbw_A Adenylate kinase 4, AK4 92.0 0.074 2.5E-06 54.3 3.2 23 208-230 27-49 (246)
371 1q57_A DNA primase/helicase; d 92.0 0.49 1.7E-05 54.0 10.3 54 207-263 241-294 (503)
372 1znw_A Guanylate kinase, GMP k 92.0 0.079 2.7E-06 52.4 3.2 23 208-230 20-42 (207)
373 2jeo_A Uridine-cytidine kinase 92.0 0.09 3.1E-06 53.6 3.8 24 207-230 24-47 (245)
374 1rj9_A FTSY, signal recognitio 91.9 0.088 3E-06 55.3 3.6 24 207-230 101-124 (304)
375 2pt5_A Shikimate kinase, SK; a 91.9 0.084 2.9E-06 50.1 3.2 21 210-230 2-22 (168)
376 2grj_A Dephospho-COA kinase; T 91.8 0.093 3.2E-06 50.9 3.5 24 207-230 11-34 (192)
377 2zts_A Putative uncharacterize 91.8 0.38 1.3E-05 48.9 8.5 49 208-259 30-78 (251)
378 2f6r_A COA synthase, bifunctio 91.8 0.1 3.5E-06 54.4 4.0 24 206-229 73-96 (281)
379 3l0o_A Transcription terminati 91.8 0.094 3.2E-06 55.8 3.6 51 192-249 164-216 (427)
380 2vli_A Antibiotic resistance p 91.8 0.056 1.9E-06 52.2 1.8 23 208-230 5-27 (183)
381 1aky_A Adenylate kinase; ATP:A 91.8 0.085 2.9E-06 52.8 3.2 23 208-230 4-26 (220)
382 2wwf_A Thymidilate kinase, put 91.7 0.089 3E-06 52.2 3.3 23 208-230 10-32 (212)
383 3tlx_A Adenylate kinase 2; str 91.7 0.15 5.2E-06 51.8 5.1 24 207-230 28-51 (243)
384 1z6g_A Guanylate kinase; struc 91.7 0.073 2.5E-06 53.1 2.6 23 208-230 23-45 (218)
385 3fwy_A Light-independent proto 91.7 0.096 3.3E-06 55.3 3.6 40 206-247 46-85 (314)
386 1s96_A Guanylate kinase, GMP k 91.6 0.092 3.1E-06 52.3 3.2 24 207-230 15-38 (219)
387 1sq5_A Pantothenate kinase; P- 91.5 0.21 7.2E-06 52.8 6.1 25 206-230 78-102 (308)
388 3zvl_A Bifunctional polynucleo 91.5 0.39 1.3E-05 53.1 8.5 25 206-230 256-280 (416)
389 4e22_A Cytidylate kinase; P-lo 91.4 0.095 3.2E-06 53.7 3.2 23 208-230 27-49 (252)
390 2hf9_A Probable hydrogenase ni 91.4 0.19 6.5E-06 50.4 5.4 38 188-231 24-61 (226)
391 1zd8_A GTP:AMP phosphotransfer 91.4 0.098 3.3E-06 52.6 3.2 23 208-230 7-29 (227)
392 3cmu_A Protein RECA, recombina 91.4 0.35 1.2E-05 63.1 8.8 84 207-297 382-471 (2050)
393 1pgv_A TMD-1, tropomodulin TMD 91.2 0.19 6.5E-06 48.5 4.9 37 614-650 67-108 (197)
394 1m7g_A Adenylylsulfate kinase; 91.1 0.13 4.4E-06 51.0 3.7 24 207-230 24-47 (211)
395 3fb4_A Adenylate kinase; psych 91.0 0.11 3.8E-06 51.7 3.2 21 210-230 2-22 (216)
396 1gtv_A TMK, thymidylate kinase 91.0 0.07 2.4E-06 53.1 1.7 21 210-230 2-22 (214)
397 2r9v_A ATP synthase subunit al 91.0 0.58 2E-05 51.8 9.0 86 207-296 174-276 (515)
398 2pt7_A CAG-ALFA; ATPase, prote 91.0 0.37 1.3E-05 51.3 7.3 105 209-328 172-276 (330)
399 1vht_A Dephospho-COA kinase; s 91.0 0.14 4.7E-06 51.1 3.8 23 208-230 4-26 (218)
400 1zak_A Adenylate kinase; ATP:A 91.0 0.1 3.5E-06 52.2 2.9 23 208-230 5-27 (222)
401 2v54_A DTMP kinase, thymidylat 90.9 0.12 4E-06 51.0 3.2 22 209-230 5-26 (204)
402 2f1r_A Molybdopterin-guanine d 90.9 0.079 2.7E-06 50.3 1.9 22 209-230 3-24 (171)
403 3cmw_A Protein RECA, recombina 90.9 0.35 1.2E-05 62.2 8.1 85 207-298 382-472 (1706)
404 2wsm_A Hydrogenase expression/ 90.9 0.2 7E-06 49.9 5.0 39 187-231 15-53 (221)
405 3b5x_A Lipid A export ATP-bind 90.9 0.63 2.2E-05 54.1 9.9 24 207-230 368-391 (582)
406 3dl0_A Adenylate kinase; phosp 90.9 0.12 4.1E-06 51.5 3.2 21 210-230 2-22 (216)
407 3k1j_A LON protease, ATP-depen 90.8 0.15 5E-06 59.8 4.4 42 181-230 41-82 (604)
408 3vkw_A Replicase large subunit 90.8 0.59 2E-05 51.2 8.8 112 205-329 158-272 (446)
409 3be4_A Adenylate kinase; malar 90.8 0.11 3.6E-06 51.9 2.8 22 209-230 6-27 (217)
410 4eaq_A DTMP kinase, thymidylat 90.7 0.23 8E-06 49.8 5.3 24 207-230 25-48 (229)
411 3a8t_A Adenylate isopentenyltr 90.7 0.15 5.1E-06 53.7 3.9 24 207-230 39-62 (339)
412 3hjn_A DTMP kinase, thymidylat 90.7 0.42 1.4E-05 46.5 6.9 50 210-261 2-51 (197)
413 2i3b_A HCR-ntpase, human cance 90.7 0.11 3.8E-06 50.3 2.7 22 210-231 3-24 (189)
414 3vr4_D V-type sodium ATPase su 90.6 0.3 1E-05 53.4 6.2 86 209-296 152-257 (465)
415 3d3q_A TRNA delta(2)-isopenten 90.6 0.13 4.6E-06 54.3 3.5 22 209-230 8-29 (340)
416 3nwj_A ATSK2; P loop, shikimat 90.5 0.1 3.6E-06 52.9 2.5 22 209-230 49-70 (250)
417 3b9q_A Chloroplast SRP recepto 90.5 0.15 5.1E-06 53.6 3.7 24 207-230 99-122 (302)
418 3r20_A Cytidylate kinase; stru 90.4 0.14 4.8E-06 51.2 3.2 23 208-230 9-31 (233)
419 2eyu_A Twitching motility prot 90.4 0.21 7.1E-06 51.2 4.6 109 207-329 24-135 (261)
420 3vr4_A V-type sodium ATPase ca 90.4 0.62 2.1E-05 52.2 8.6 58 192-258 221-279 (600)
421 2pcj_A ABC transporter, lipopr 90.4 0.14 4.8E-06 51.2 3.2 22 209-230 31-52 (224)
422 1pgv_A TMD-1, tropomodulin TMD 90.3 0.27 9.3E-06 47.4 5.1 110 560-675 38-168 (197)
423 2onk_A Molybdate/tungstate ABC 90.3 0.14 4.7E-06 51.8 3.1 22 209-230 25-46 (240)
424 2ehv_A Hypothetical protein PH 90.3 0.14 4.7E-06 52.4 3.2 23 208-230 30-52 (251)
425 3lnc_A Guanylate kinase, GMP k 90.3 0.096 3.3E-06 52.8 1.9 23 208-230 27-50 (231)
426 2ged_A SR-beta, signal recogni 90.3 0.18 6.1E-06 49.0 3.9 25 207-231 47-71 (193)
427 3tif_A Uncharacterized ABC tra 90.3 0.14 4.7E-06 51.7 3.0 22 209-230 32-53 (235)
428 3ake_A Cytidylate kinase; CMP 90.2 0.15 5E-06 50.4 3.2 21 210-230 4-24 (208)
429 3exa_A TRNA delta(2)-isopenten 90.2 0.17 5.7E-06 52.6 3.7 23 208-230 3-25 (322)
430 2qe7_A ATP synthase subunit al 90.2 0.42 1.5E-05 52.8 7.0 86 207-296 161-263 (502)
431 3crm_A TRNA delta(2)-isopenten 90.1 0.16 5.5E-06 53.3 3.5 23 208-230 5-27 (323)
432 3mfy_A V-type ATP synthase alp 90.1 0.46 1.6E-05 53.0 7.2 59 192-259 216-275 (588)
433 1np6_A Molybdopterin-guanine d 90.0 0.16 5.4E-06 48.3 3.1 24 207-230 5-28 (174)
434 2r8r_A Sensor protein; KDPD, P 90.0 0.33 1.1E-05 47.8 5.4 106 209-328 7-128 (228)
435 2qmh_A HPR kinase/phosphorylas 90.0 0.16 5.5E-06 48.7 3.0 22 209-230 35-56 (205)
436 4edh_A DTMP kinase, thymidylat 89.9 0.48 1.7E-05 46.7 6.6 23 208-230 6-28 (213)
437 1e4v_A Adenylate kinase; trans 89.8 0.17 5.9E-06 50.2 3.4 21 210-230 2-22 (214)
438 3sr0_A Adenylate kinase; phosp 89.8 0.17 5.8E-06 49.7 3.2 21 210-230 2-22 (206)
439 3foz_A TRNA delta(2)-isopenten 89.8 0.21 7E-06 51.8 4.0 24 207-230 9-32 (316)
440 3p32_A Probable GTPase RV1496/ 89.8 0.48 1.6E-05 51.2 7.2 37 190-230 65-101 (355)
441 4g1u_C Hemin import ATP-bindin 89.8 0.24 8.1E-06 50.9 4.5 22 209-230 38-59 (266)
442 1xx6_A Thymidine kinase; NESG, 89.7 0.13 4.4E-06 49.7 2.3 109 208-327 8-118 (191)
443 2xb4_A Adenylate kinase; ATP-b 89.7 0.17 5.9E-06 50.6 3.2 21 210-230 2-22 (223)
444 2o8b_B DNA mismatch repair pro 89.6 0.26 9E-06 60.7 5.4 22 208-229 789-810 (1022)
445 3end_A Light-independent proto 89.6 0.34 1.2E-05 51.2 5.7 42 206-249 39-80 (307)
446 3b85_A Phosphate starvation-in 89.6 0.13 4.5E-06 50.6 2.2 22 209-230 23-44 (208)
447 1b0u_A Histidine permease; ABC 89.6 0.17 5.6E-06 52.0 3.0 23 208-230 32-54 (262)
448 2ck3_A ATP synthase subunit al 89.5 0.72 2.5E-05 51.1 8.2 90 207-296 161-271 (510)
449 1ak2_A Adenylate kinase isoenz 89.5 0.19 6.4E-06 50.7 3.4 23 208-230 16-38 (233)
450 3gfo_A Cobalt import ATP-bindi 89.5 0.17 5.8E-06 52.2 3.1 22 209-230 35-56 (275)
451 1mv5_A LMRA, multidrug resista 89.5 0.2 6.7E-06 50.9 3.5 23 208-230 28-50 (243)
452 1u0j_A DNA replication protein 89.4 0.28 9.6E-06 49.8 4.5 37 190-230 90-126 (267)
453 3ld9_A DTMP kinase, thymidylat 89.4 0.45 1.5E-05 47.2 5.9 25 206-230 19-43 (223)
454 2olj_A Amino acid ABC transpor 89.4 0.18 6E-06 51.7 3.0 23 208-230 50-72 (263)
455 3llm_A ATP-dependent RNA helic 89.3 1.1 3.9E-05 44.9 9.2 89 209-298 77-187 (235)
456 1yrb_A ATP(GTP)binding protein 89.3 0.24 8.4E-06 50.9 4.2 25 206-230 12-36 (262)
457 2wji_A Ferrous iron transport 89.3 0.24 8.3E-06 46.6 3.8 23 209-231 4-26 (165)
458 2og2_A Putative signal recogni 89.3 0.21 7.1E-06 53.6 3.7 24 207-230 156-179 (359)
459 1sgw_A Putative ABC transporte 89.2 0.16 5.4E-06 50.2 2.5 22 209-230 36-57 (214)
460 2v9p_A Replication protein E1; 89.2 0.19 6.4E-06 52.5 3.2 24 207-230 125-148 (305)
461 1ji0_A ABC transporter; ATP bi 89.2 0.19 6.4E-06 50.9 3.1 22 209-230 33-54 (240)
462 3bgw_A DNAB-like replicative h 89.1 1.2 4.3E-05 49.4 10.0 51 207-261 196-246 (444)
463 1ltq_A Polynucleotide kinase; 89.0 0.21 7.1E-06 52.7 3.5 22 209-230 3-24 (301)
464 1g6h_A High-affinity branched- 89.0 0.19 6.6E-06 51.4 3.1 22 209-230 34-55 (257)
465 3b60_A Lipid A export ATP-bind 89.0 0.72 2.5E-05 53.6 8.3 23 208-230 369-391 (582)
466 2zej_A Dardarin, leucine-rich 89.0 0.19 6.5E-06 48.4 2.9 22 210-231 4-25 (184)
467 1a7j_A Phosphoribulokinase; tr 89.0 0.096 3.3E-06 54.7 0.8 24 207-230 4-27 (290)
468 1oix_A RAS-related protein RAB 89.0 0.22 7.6E-06 48.3 3.4 24 208-231 29-52 (191)
469 2d2e_A SUFC protein; ABC-ATPas 89.0 0.21 7.1E-06 50.9 3.2 22 209-230 30-51 (250)
470 2ff7_A Alpha-hemolysin translo 88.9 0.2 6.8E-06 50.9 3.1 22 209-230 36-57 (247)
471 1vpl_A ABC transporter, ATP-bi 88.9 0.2 6.7E-06 51.2 3.0 22 209-230 42-63 (256)
472 2j9r_A Thymidine kinase; TK1, 88.8 0.28 9.7E-06 47.8 3.9 111 207-328 27-139 (214)
473 2ghi_A Transport protein; mult 88.8 0.2 6.9E-06 51.3 3.0 22 209-230 47-68 (260)
474 3oaa_A ATP synthase subunit al 88.8 0.93 3.2E-05 50.0 8.3 86 207-296 161-263 (513)
475 2zu0_C Probable ATP-dependent 88.8 0.21 7.3E-06 51.4 3.2 22 209-230 47-68 (267)
476 1svm_A Large T antigen; AAA+ f 88.8 0.21 7.3E-06 54.0 3.3 24 207-230 168-191 (377)
477 3lv8_A DTMP kinase, thymidylat 88.7 0.54 1.8E-05 47.1 6.0 37 208-245 27-63 (236)
478 1fx0_A ATP synthase alpha chai 88.7 0.43 1.5E-05 52.9 5.6 86 207-296 162-264 (507)
479 2ixe_A Antigen peptide transpo 88.6 0.21 7.2E-06 51.5 3.0 23 208-230 45-67 (271)
480 2qi9_C Vitamin B12 import ATP- 88.6 0.22 7.5E-06 50.6 3.1 22 209-230 27-48 (249)
481 2vp4_A Deoxynucleoside kinase; 88.4 0.22 7.6E-06 50.0 3.0 25 206-230 18-42 (230)
482 1nlf_A Regulatory protein REPA 88.3 0.24 8.3E-06 51.5 3.4 22 209-230 31-52 (279)
483 2nq2_C Hypothetical ABC transp 88.3 0.23 7.9E-06 50.6 3.1 22 209-230 32-53 (253)
484 2yz2_A Putative ABC transporte 88.3 0.23 7.8E-06 51.1 3.0 22 209-230 34-55 (266)
485 2ihy_A ABC transporter, ATP-bi 88.3 0.23 7.9E-06 51.4 3.1 22 209-230 48-69 (279)
486 1q3t_A Cytidylate kinase; nucl 88.2 0.26 8.7E-06 49.8 3.3 24 207-230 15-38 (236)
487 3f9v_A Minichromosome maintena 88.2 0.16 5.4E-06 59.1 1.9 22 210-231 329-350 (595)
488 4akg_A Glutathione S-transfera 88.1 1.2 4.1E-05 60.4 10.4 147 211-380 1270-1452(2695)
489 2fz4_A DNA repair protein RAD2 88.1 1.1 3.8E-05 45.0 8.1 104 211-325 111-227 (237)
490 1w36_D RECD, exodeoxyribonucle 88.0 0.91 3.1E-05 52.9 8.2 118 209-329 165-301 (608)
491 3gqb_B V-type ATP synthase bet 87.9 0.47 1.6E-05 51.9 5.3 90 207-296 146-260 (464)
492 2f9l_A RAB11B, member RAS onco 87.9 0.25 8.5E-06 48.3 2.9 24 208-231 5-28 (199)
493 3cmw_A Protein RECA, recombina 87.9 0.8 2.7E-05 59.0 8.1 83 207-296 1430-1518(1706)
494 4tmk_A Protein (thymidylate ki 87.8 0.71 2.4E-05 45.4 6.2 52 209-261 4-55 (213)
495 2wjg_A FEOB, ferrous iron tran 87.7 0.34 1.2E-05 46.7 3.8 25 207-231 6-30 (188)
496 3v9p_A DTMP kinase, thymidylat 87.7 0.48 1.6E-05 47.1 4.9 23 208-230 25-47 (227)
497 3eph_A TRNA isopentenyltransfe 87.6 0.31 1E-05 52.6 3.6 22 209-230 3-24 (409)
498 2dyk_A GTP-binding protein; GT 87.6 0.32 1.1E-05 45.3 3.5 23 209-231 2-24 (161)
499 3sop_A Neuronal-specific septi 87.5 0.3 1E-05 50.3 3.4 21 210-230 4-24 (270)
500 3gqb_A V-type ATP synthase alp 87.4 0.53 1.8E-05 52.5 5.3 40 207-250 220-259 (578)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.5e-45 Score=428.66 Aligned_cols=316 Identities=16% Similarity=0.229 Sum_probs=256.7
Q ss_pred ccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc--ChhhhccCCceEEEEecCCC--CHHHHHHHH
Q 044195 184 YGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN--DDRVQRRFQIKAWTFVSEDF--NVFRVTKSI 259 (1024)
Q Consensus 184 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i 259 (1024)
|||++++++|.++|.... ++..++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.. +...+++.|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997652 34679999999999999999999997 66889999999999999885 889999999
Q ss_pred HHhccCCCC-------CCCcHHHHHHHHHHHhCCC-ceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchhhh
Q 044195 260 LKSITNDQS-------KDDDLNWVQEKLKKQLSGK-KFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRVTV 331 (1024)
Q Consensus 260 l~~l~~~~~-------~~~~~~~~~~~l~~~l~~~-~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~ 331 (1024)
+.+++.... ...+.+.+...+++.++++ ||||||||+|+.....|... +||+||||||+..++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccccc--------CCCEEEEEcCCHHHHH
Confidence 999986532 2234567788999999996 99999999998543334432 7899999999999988
Q ss_pred ccC-CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHHhcc
Q 044195 332 NMG-ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLLRGKHDPRDWEFVLNND 410 (1024)
Q Consensus 332 ~~~-~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~ 410 (1024)
.++ ...+|+|++|+++|||+||.+.+++.. .++.+++++.+|+++|+|+||||+++|+.++.+ . ..|...+...
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 776 446799999999999999999987643 246778899999999999999999999999766 2 3343444433
Q ss_pred ccCCCCCCCChhhHHHhhhcCCChhHHHHHh-----------hhccCCCCceeCHHHHHHHHHhc--CCcccCCCCccHH
Q 044195 411 ICNLPEENCNIIPALGVSCHFLPPQLKQCFA-----------YCSLFPKGYEFQEEEIISLWAAE--GFLHQENSGRKME 477 (1024)
Q Consensus 411 ~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl-----------~~~~fp~~~~i~~~~li~~w~~~--gli~~~~~~~~~~ 477 (1024)
.+.. ....+.+++.+||+.||+++|.||+ |||+||+++.|+ ++.|+|+ ||+.....+..++
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 2221 1345888999999999999999999 999999999999 8899999 9998655466788
Q ss_pred HHHHHHHHHHHhcCCccccCC-CCCcEEEchhHHHHHHHHhcCceE
Q 044195 478 DLGREFVQELLSRSFFQRSSK-NASRFLMHDLINDLARWAAGGICF 522 (1024)
Q Consensus 478 ~~~~~~~~~Lv~~~l~~~~~~-~~~~~~~Hdli~~~~~~~~~~~~~ 522 (1024)
++++ ++++|++++|++.... ...+|+|||+||++++.++.+++.
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 8888 9999999999998653 346799999999999998877654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=5.5e-37 Score=359.61 Aligned_cols=284 Identities=20% Similarity=0.219 Sum_probs=227.9
Q ss_pred cccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCc-eEEEEecCCCCHHHHHHHHHH
Q 044195 183 VYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQI-KAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 183 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~il~ 261 (1024)
.|||++++++|.++|.... ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4999999999999998642 3689999999999999999999987778899986 899999999998888888777
Q ss_pred hccCCC---C---C-----CCcHHHHHHHHHHHh---CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCc
Q 044195 262 SITNDQ---S---K-----DDDLNWVQEKLKKQL---SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNL 327 (1024)
Q Consensus 262 ~l~~~~---~---~-----~~~~~~~~~~l~~~l---~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~ 327 (1024)
.++... . . ..+.+.+...+++.+ .++|+||||||+|+ .+.|+.+. +||+||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHHH-------SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhhC-------CCeEEEEeccCh
Confidence 543211 0 0 123445566677765 78999999999988 45666542 689999999999
Q ss_pred hhhhccCCccceecC------CCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhhcCCC-Ch
Q 044195 328 RVTVNMGADQAYQLK------ELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLLRGKH-DP 400 (1024)
Q Consensus 328 ~~~~~~~~~~~~~l~------~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~-~~ 400 (1024)
.++..+.....+.++ +|+++||++||.+.. +.. . .++..+ .|+|+||||+++|+.|+.++ ..
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPRE---VLTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCCH
Confidence 987655443456676 999999999999883 321 1 123333 39999999999999998874 56
Q ss_pred hHHHHHHhccccCCCCCCCChhhHHHhhhcCCChhH-HHHHhhhccCCCCceeCHHHHHHHHHhcCCcccCCCCccHHHH
Q 044195 401 RDWEFVLNNDICNLPEENCNIIPALGVSCHFLPPQL-KQCFAYCSLFPKGYEFQEEEIISLWAAEGFLHQENSGRKMEDL 479 (1024)
Q Consensus 401 ~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~cfl~~~~fp~~~~i~~~~li~~w~~~gli~~~~~~~~~~~~ 479 (1024)
..|... ....+..+|.+||+.||++. |.||+|||+||+++.|+.+.++.+|.++| ++.
T Consensus 345 eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eed 403 (1221)
T 1vt4_I 345 DNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSD 403 (1221)
T ss_dssp HHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHH
T ss_pred HHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHH
Confidence 778753 13469999999999999999 99999999999999999999999998876 134
Q ss_pred HHHHHHHHHhcCCccccCCCCCcEEEchhHHHHH
Q 044195 480 GREFVQELLSRSFFQRSSKNASRFLMHDLINDLA 513 (1024)
Q Consensus 480 ~~~~~~~Lv~~~l~~~~~~~~~~~~~Hdli~~~~ 513 (1024)
+..++++|+++||++... ...+|+|||++++++
T Consensus 404 Ae~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQP-KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHh
Confidence 788999999999999853 457899999999855
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.5e-35 Score=383.45 Aligned_cols=310 Identities=21% Similarity=0.332 Sum_probs=246.2
Q ss_pred ccCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhh-hccC-CceEEEEecCCCC--HHH
Q 044195 179 NEAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRV-QRRF-QIKAWTFVSEDFN--VFR 254 (1024)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~--~~~ 254 (1024)
....||||++++++|.++|.... +..++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ...
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 44569999999999999997542 46799999999999999999999997543 4445 5677999998543 445
Q ss_pred HHHHHHHhccCCC----CCCCcHHHHHHHHHHHhCCC--ceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCch
Q 044195 255 VTKSILKSITNDQ----SKDDDLNWVQEKLKKQLSGK--KFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLR 328 (1024)
Q Consensus 255 ~~~~il~~l~~~~----~~~~~~~~~~~~l~~~l~~~--~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~ 328 (1024)
.+..++..+.... ....+.+.+...++..+.++ |+||||||+|+. ..|..+ .+|++||||||++.
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCHH
Confidence 5667777765543 23456788888999999877 999999999864 334332 47899999999999
Q ss_pred hhhc-cCCccceecCC-CChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHH
Q 044195 329 VTVN-MGADQAYQLKE-LSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLLRGKHDPRDWEFV 406 (1024)
Q Consensus 329 ~~~~-~~~~~~~~l~~-L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~ 406 (1024)
++.. .+....+.+.+ |+++||++||...++... +..++++++|+++|+|+||||+++|++|+.++ ..|...
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~ 341 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYY 341 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHH
Confidence 9854 45667899996 999999999998874322 23346789999999999999999999998874 467777
Q ss_pred HhccccCC----C----CCCCChhhHHHhhhcCCChhHHHHHhhhccCCCCceeCHHHHHHHHHhcCCcccCCCCccHHH
Q 044195 407 LNNDICNL----P----EENCNIIPALGVSCHFLPPQLKQCFAYCSLFPKGYEFQEEEIISLWAAEGFLHQENSGRKMED 478 (1024)
Q Consensus 407 l~~~~~~~----~----~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~~~gli~~~~~~~~~~~ 478 (1024)
++...... . .....+..++.+||+.||+++|.||+|||+||+++.|+.+.++..|.++ ++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~ 409 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TE 409 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HH
T ss_pred HHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HH
Confidence 65433221 1 1114589999999999999999999999999999999999999999553 35
Q ss_pred HHHHHHHHHHhcCCccccCC-CCCcEEEchhHHHHHHHHhcCc
Q 044195 479 LGREFVQELLSRSFFQRSSK-NASRFLMHDLINDLARWAAGGI 520 (1024)
Q Consensus 479 ~~~~~~~~Lv~~~l~~~~~~-~~~~~~~Hdli~~~~~~~~~~~ 520 (1024)
.+++++++|++++|++.... ...+|+||+++|++++..+.++
T Consensus 410 ~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 68899999999999987643 2236999999999999887654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=328.54 Aligned_cols=303 Identities=23% Similarity=0.357 Sum_probs=231.5
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhh-hccC-CceEEEEecCCCCHHHHHH-
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRV-QRRF-QIKAWTFVSEDFNVFRVTK- 257 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~- 257 (1024)
..||||++++++|.++|... ++..++|+|+||||+||||||.+++++.++ +.+| +.++|++++.. +...++.
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL----KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS----TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhcc----cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 45999999999999999653 245789999999999999999999997665 7889 47999999875 3333333
Q ss_pred --HHHHhccCC----CCCCCcHHHHHHHHHHHhCC--CceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchh
Q 044195 258 --SILKSITND----QSKDDDLNWVQEKLKKQLSG--KKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRV 329 (1024)
Q Consensus 258 --~il~~l~~~----~~~~~~~~~~~~~l~~~l~~--~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~ 329 (1024)
.++..++.. .....+.+.+...+...+.+ +++||||||+|+. ..+. .+ .+|++||||||+..+
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~----~l---~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK----AF---DSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH----TT---CSSCEEEEEESCGGG
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHH----Hh---cCCCeEEEECCCcHH
Confidence 334444421 12345667777788888765 7999999999863 2332 22 368999999999988
Q ss_pred hhccCCccceec---CCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHH
Q 044195 330 TVNMGADQAYQL---KELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLLRGKHDPRDWEFV 406 (1024)
Q Consensus 330 ~~~~~~~~~~~l---~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~ 406 (1024)
+..+. ...+.+ ++|+.+||++||...++... +...+.+.+|+++|+|+||||..+|++++..+ ..|..+
T Consensus 270 ~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~ 341 (591)
T 1z6t_A 270 TDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYY 341 (591)
T ss_dssp GTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHH
T ss_pred HHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHH
Confidence 76543 233444 58999999999999875421 12236788999999999999999999998763 368777
Q ss_pred HhccccCC--------CCCCCChhhHHHhhhcCCChhHHHHHhhhccCCCCceeCHHHHHHHHHhcCCcccCCCCccHHH
Q 044195 407 LNNDICNL--------PEENCNIIPALGVSCHFLPPQLKQCFAYCSLFPKGYEFQEEEIISLWAAEGFLHQENSGRKMED 478 (1024)
Q Consensus 407 l~~~~~~~--------~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~~~gli~~~~~~~~~~~ 478 (1024)
+....... ......+..++..||+.||++.|.||+++|+||+++.|+.+.+...|.++ .+
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~ 409 (591)
T 1z6t_A 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TE 409 (591)
T ss_dssp HHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HH
T ss_pred HHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HH
Confidence 65433221 11224688999999999999999999999999999999999999999542 23
Q ss_pred HHHHHHHHHHhcCCccccCC-CCCcEEEchhHHHHHHHHh
Q 044195 479 LGREFVQELLSRSFFQRSSK-NASRFLMHDLINDLARWAA 517 (1024)
Q Consensus 479 ~~~~~~~~Lv~~~l~~~~~~-~~~~~~~Hdli~~~~~~~~ 517 (1024)
.+..++++|+++++++.... ...+|.||++++++++...
T Consensus 410 ~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 410 EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 47889999999999986542 2347999999999998874
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=1.4e-29 Score=304.78 Aligned_cols=432 Identities=16% Similarity=0.089 Sum_probs=262.4
Q ss_pred cccceeEEEEEccCCCCCcccccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccC-Ccccc
Q 044195 536 FSQSLRHFSYIRGECDGGTRFDFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDL-PNEIG 614 (1024)
Q Consensus 536 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l-p~~l~ 614 (1024)
++..++++.+..+.... .....+.++++|++|.+.++. +....+..|.++++|++|+|++| .+..+ |..++
T Consensus 30 ~~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~------l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~ 101 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCE------IETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFS 101 (606)
T ss_dssp SCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSST
T ss_pred CCCCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCc------ccccCHHHhhchhhcCEeECCCC-cccccChhhcC
Confidence 56778888887764422 223457788999999998775 44444556789999999999999 57776 78899
Q ss_pred CCCCCcEeeccCCCccccC-cccccCCCCcEEecCCCcccc--ccccccCCCCcccEEeccCCcccccc-CccCCCCCCC
Q 044195 615 NLKHLRFLNLSRTNIQILP-QSINSLYNLHTVLLEDCRRLK--KLCKDMGNLTKLHHLRNSNVHSLEEM-PKGFGKLTCL 690 (1024)
Q Consensus 615 ~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~-p~~i~~l~~L 690 (1024)
++++|++|++++|.++.+| ..++++++|++|++++| .+. .+|..++++++|++|++++|. +..+ |..++.+++|
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLREN 179 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHC
T ss_pred CcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhcc
Confidence 9999999999999998776 67899999999999998 444 578889999999999999988 5554 3446555555
Q ss_pred Cc----cCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhh-----------------------------
Q 044195 691 TT----LCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQ----------------------------- 737 (1024)
Q Consensus 691 ~~----L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~----------------------------- 737 (1024)
+. |....+. ... .........+|+ .+.+.... ......+..
T Consensus 180 ~~~l~~L~l~~n~-l~~-~~~~~~~~~~L~-~L~L~~n~---~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~ 253 (606)
T 3vq2_A 180 PQVNLSLDMSLNP-IDF-IQDQAFQGIKLH-ELTLRGNF---NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253 (606)
T ss_dssp TTCCCEEECTTCC-CCE-ECTTTTTTCEEE-EEEEESCC---SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGG
T ss_pred ccccceeeccCCC-cce-eCcccccCceee-eeeccCCc---cchhHHHHHhccccccccccccccccccCCcccccChH
Confidence 42 2111110 000 000000111222 22222211 011111122
Q ss_pred ---------------------------cCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEE
Q 044195 738 ---------------------------LNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTIT 790 (1024)
Q Consensus 738 ---------------------------l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 790 (1024)
+..+++|+.|+++++.... ++.+..+++|+.|+++
T Consensus 254 ~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------------l~~l~~~~~L~~L~l~ 315 (606)
T 3vq2_A 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY------------------LEDVPKHFKWQSLSII 315 (606)
T ss_dssp GGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC------------------CCCCCTTCCCSEEEEE
T ss_pred HhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh------------------hhhccccccCCEEEcc
Confidence 3444555666665554311 1245556677777777
Q ss_pred ecCCCCCCcccCCCCCCCceEEEEecCCCCCCCCCCCCCCCCceeeecCCCCceEe---ccccccC--------------
Q 044195 791 GYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLPSVGQLPVLKHLEMRGMDRVKSV---GLEFYGN-------------- 853 (1024)
Q Consensus 791 ~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~---~~~~~~~-------------- 853 (1024)
+|....+|.+ .+++|+.|++++|.....+ .++.+++|++|++++|.. ..+ +..+...
T Consensus 316 ~n~l~~lp~~----~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l-~~~~~~~~~~~~~~~L~~L~L~~n~l~ 389 (606)
T 3vq2_A 316 RCQLKQFPTL----DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNAL-SFSGCCSYSDLGTNSLRHLDLSFNGAI 389 (606)
T ss_dssp SCCCSSCCCC----CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCE-EEEEECCHHHHCCSCCCEEECCSCSEE
T ss_pred cccCcccccC----CCCccceeeccCCcCccch-hhccCCCCCEEECcCCcc-CCCcchhhhhccCCcccEeECCCCccc
Confidence 7776666644 2667777777766544333 445666666666666532 222 1111000
Q ss_pred ---CCCCCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCcccCC---CCCCCccEEEEecccC---
Q 044195 854 ---SCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLP---ERLLLLEKLVIQSCKQ--- 924 (1024)
Q Consensus 854 ---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp---~~l~~L~~L~l~~c~~--- 924 (1024)
.....+++|+.|+++++. +....+..... .+++|+.|++++| .+++..| ..+++|+.|++++|..
T Consensus 390 ~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~----~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 463 (606)
T 3vq2_A 390 IMSANFMGLEELQHLDFQHST-LKRVTEFSAFL----SLEKLLYLDISYT-NTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463 (606)
T ss_dssp EECCCCTTCTTCCEEECTTSE-EESTTTTTTTT----TCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred cchhhccCCCCCCeeECCCCc-cCCccChhhhh----ccccCCEEECcCC-CCCccchhhhcCCCCCCEEECCCCcCCCc
Confidence 011224555555555432 22221111111 1677777777777 4554455 3567778888877742
Q ss_pred -ccccCCCCCCcCEEEEccCCCccccC--CCCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCCCCccccccc
Q 044195 925 -LLVTIQCLPALSELQIRGCRRVVFSS--PIDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSET 1001 (1024)
Q Consensus 925 -l~~~l~~l~~L~~L~l~~~~~l~~~~--~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p 1001 (1024)
++..+..+++|++|++++|......+ ...+++|++|++++|+ ++.+....+.++++|+.|++++| .++.+ |
T Consensus 464 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~----p 537 (606)
T 3vq2_A 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFN-RIETS----K 537 (606)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCEEGGGTTTCTTCCEEECTTS-CCCCE----E
T ss_pred chHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc-CCCcCHHHccCCCcCCEEECCCC-cCccc----C
Confidence 35567777888888888886333222 2456788888888764 44454456777888888888888 56677 5
Q ss_pred ccccCCC-CCCEEeeeCCC
Q 044195 1002 RLLQDIR-SLNRLHISRCP 1019 (1024)
Q Consensus 1002 ~~l~~l~-~L~~L~l~~c~ 1019 (1024)
..+..++ +|+.|++++||
T Consensus 538 ~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 538 GILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp SCGGGSCTTCCEEECCSCC
T ss_pred HhHhhhcccCcEEEccCCC
Confidence 5677776 58888888876
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.8e-30 Score=319.31 Aligned_cols=431 Identities=17% Similarity=0.146 Sum_probs=245.7
Q ss_pred ccceeEEEEEccCCCCCcccccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCC
Q 044195 537 SQSLRHFSYIRGECDGGTRFDFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNL 616 (1024)
Q Consensus 537 ~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l 616 (1024)
....+++.+..+.... ..+.+..+++|++|.+.++. +....+..+..+++|++|+|++|.....+|.. .+
T Consensus 199 l~~L~~L~Ls~n~l~~--~~~~l~~l~~L~~L~Ls~n~------l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l 268 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFST--GIPFLGDCSALQHLDISGNK------LSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PL 268 (768)
T ss_dssp CTTCCEEECCSSCCCS--CCCBCTTCCSCCEEECCSSC------CCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CC
T ss_pred CCcCCEEECcCCcCCC--CCcccccCCCCCEEECcCCc------CCCcccHHHhcCCCCCEEECCCCcccCccCcc--cc
Confidence 4566777776664432 22337788888888887765 44556677788888888888888433344433 77
Q ss_pred CCCcEeeccCCCcc-ccCcccccC-CCCcEEecCCCccccccccccCCCCcccEEeccCCccccccCcc-CCCCCCCCcc
Q 044195 617 KHLRFLNLSRTNIQ-ILPQSINSL-YNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKG-FGKLTCLTTL 693 (1024)
Q Consensus 617 ~~L~~L~L~~~~i~-~lp~~i~~L-~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L 693 (1024)
++|++|++++|.++ .+|..+..+ ++|++|++++|.....+|..++++++|++|++++|...+.+|.. ++++++|+.|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L 348 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEE
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEE
Confidence 78888888888777 677777665 88888888887544567777888888888888887733367765 7777777777
Q ss_pred CceeeCCCCCcccccccCcc-cCCCceEeccCCCCCCcccchhhhcCC--CCCCCcEEEEecCCCCccccccccccchhh
Q 044195 694 CRFVVGKDSGSALRELKSLT-NLQGTLEISSLENVKCVGDAIEAQLNR--KVNLEALVLRWCNRSCISNIRNEDAVDLET 770 (1024)
Q Consensus 694 ~~~~~~~~~~~~~~~l~~L~-~L~~~L~i~~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~ 770 (1024)
....+. ..+..+..+..+. .|+ .+.+..... ....+..+.. +++|+.|+++.|....
T Consensus 349 ~Ls~n~-l~~~~p~~l~~l~~~L~-~L~Ls~N~l----~~~~~~~~~~~~~~~L~~L~L~~n~l~~-------------- 408 (768)
T 3rgz_A 349 DLSFNE-FSGELPESLTNLSASLL-TLDLSSNNF----SGPILPNLCQNPKNTLQELYLQNNGFTG-------------- 408 (768)
T ss_dssp ECCSSE-EEECCCTTHHHHTTTCS-EEECCSSEE----EEECCTTTTCSTTCCCCEEECCSSEEEE--------------
T ss_pred eCcCCc-cCccccHHHHhhhcCCc-EEEccCCCc----CCCcChhhhhcccCCccEEECCCCcccc--------------
Confidence 443321 1122333344443 444 444432211 1111112222 4455555555554310
Q ss_pred HHHHhhccCCCCCccEEEEEecCCC-CCCcccCCCCCCCceEEEEecCCCCCCCC-CCCCCCCCceeeecCCCCceEecc
Q 044195 771 QTRVLDMLKPHQKLEELTITGYGGT-KFPIWLGDFPFSKLVSLKFEYCGMCTSLP-SVGQLPVLKHLEMRGMDRVKSVGL 848 (1024)
Q Consensus 771 ~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~ 848 (1024)
..+..+..+++|+.|++++|... ..|..+.. +++|+.|++++|.....+| .++.+++|+.|++++|.....++.
T Consensus 409 --~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 484 (768)
T 3rgz_A 409 --KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS--LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484 (768)
T ss_dssp --ECCGGGGGCTTCCEEECCSSEEESCCCGGGGG--CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred --ccCHHHhcCCCCCEEECcCCcccCcccHHHhc--CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH
Confidence 11222334444444444444432 33333332 4444444444444433333 344444444444444433222222
Q ss_pred ccccCCCCCCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCcccCC---CCCCCccEEEEeccc--
Q 044195 849 EFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLP---ERLLLLEKLVIQSCK-- 923 (1024)
Q Consensus 849 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp---~~l~~L~~L~l~~c~-- 923 (1024)
.+ ..+++|+.|+++++. +.+..+..+.. +++|+.|++++| .+++.+| ..+++|+.|++++|.
T Consensus 485 ~l------~~l~~L~~L~L~~N~-l~~~~p~~~~~-----l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 485 GL------SNCTNLNWISLSNNR-LTGEIPKWIGR-----LENLAILKLSNN-SFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp GG------GGCTTCCEEECCSSC-CCSCCCGGGGG-----CTTCCEEECCSS-CCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred HH------hcCCCCCEEEccCCc-cCCcCChHHhc-----CCCCCEEECCCC-cccCcCCHHHcCCCCCCEEECCCCccC
Confidence 21 114444444444422 22222221111 444444444444 3333444 133444444444432
Q ss_pred -C----------------------------------------------------------------------ccccCCCC
Q 044195 924 -Q----------------------------------------------------------------------LLVTIQCL 932 (1024)
Q Consensus 924 -~----------------------------------------------------------------------l~~~l~~l 932 (1024)
. .|..+..+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 1 12235557
Q ss_pred CCcCEEEEccCCCccccC--CCCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCCCCcccccccccccCCCCC
Q 044195 933 PALSELQIRGCRRVVFSS--PIDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSETRLLQDIRSL 1010 (1024)
Q Consensus 933 ~~L~~L~l~~~~~l~~~~--~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l~~L 1010 (1024)
++|+.|++++|.....+| ...+++|+.|++++|.....+|. .+.++++|+.|++++|.-.+.+ |..+..+++|
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~L~~L~~LdLs~N~l~g~i----p~~l~~l~~L 706 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLRGLNILDLSSNKLDGRI----PQAMSALTML 706 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCEECC----CGGGGGCCCC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh-HHhCCCCCCEEECCCCcccCcC----ChHHhCCCCC
Confidence 889999999998544444 35788999999998766556765 5778999999999999555566 7889999999
Q ss_pred CEEeeeCCC
Q 044195 1011 NRLHISRCP 1019 (1024)
Q Consensus 1011 ~~L~l~~c~ 1019 (1024)
+.|+|++|+
T Consensus 707 ~~L~ls~N~ 715 (768)
T 3rgz_A 707 TEIDLSNNN 715 (768)
T ss_dssp SEEECCSSE
T ss_pred CEEECcCCc
Confidence 999999883
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=4.2e-30 Score=316.08 Aligned_cols=401 Identities=20% Similarity=0.166 Sum_probs=249.8
Q ss_pred CCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCcc-ccCcccccCCCCcEEecCCCccccccccccCCCCcccE
Q 044195 590 LDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQ-ILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHH 668 (1024)
Q Consensus 590 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 668 (1024)
..+++|++|+|++| .+...+..++++++|++|++++|.++ .+|..+.++++|++|++++|.....+|.. .+++|++
T Consensus 197 ~~l~~L~~L~Ls~n-~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~ 273 (768)
T 3rgz_A 197 SRCVNLEFLDVSSN-NFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273 (768)
T ss_dssp TTCTTCCEEECCSS-CCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCE
T ss_pred ccCCcCCEEECcCC-cCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCE
Confidence 44555555555555 33332222555555555555555554 34555555555555555555333333322 5555555
Q ss_pred EeccCCccccccCccCCCC-CCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhh-hcCCCCCCCc
Q 044195 669 LRNSNVHSLEEMPKGFGKL-TCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEA-QLNRKVNLEA 746 (1024)
Q Consensus 669 L~l~~~~~l~~~p~~i~~l-~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~-~l~~~~~L~~ 746 (1024)
|++++|...+.+|..++.+ ++|+.|....+ ...+..+..+..+++|+ .|.+..... ...++. .+..+++|+.
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~-~L~L~~n~l----~~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLE-SLALSSNNF----SGELPMDTLLKMRGLKV 347 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSS-EEEECCCGGGGGCTTCC-EEECCSSEE----EEECCHHHHTTCTTCCE
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCC-cCCCccchHHhcCCCcc-EEECCCCcc----cCcCCHHHHhcCCCCCE
Confidence 5555555223556555553 66666633222 11223334455566565 555543211 112222 3667778888
Q ss_pred EEEEecCCC-Ccc--------ccccccccchhhHHHHhhccCC--CCCccEEEEEecCCC-CCCcccCCCCCCCceEEEE
Q 044195 747 LVLRWCNRS-CIS--------NIRNEDAVDLETQTRVLDMLKP--HQKLEELTITGYGGT-KFPIWLGDFPFSKLVSLKF 814 (1024)
Q Consensus 747 L~l~~~~~~-~~~--------~l~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L 814 (1024)
|++++|... .++ .++.++..........+..+.. +++|+.|++++|... .+|.++.. +++|+.|++
T Consensus 348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~L 425 (768)
T 3rgz_A 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN--CSELVSLHL 425 (768)
T ss_dssp EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG--CTTCCEEEC
T ss_pred EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc--CCCCCEEEC
Confidence 888776542 111 2222222221111111222222 567888888877765 56666654 788888888
Q ss_pred ecCCCCCCCC-CCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccccccccccccccCcccc
Q 044195 815 EYCGMCTSLP-SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLR 893 (1024)
Q Consensus 815 ~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~ 893 (1024)
++|.....+| .++.+++|+.|++++|.....++..+. .+++|++|+++++ .+.+..+..+.. +++|+
T Consensus 426 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~------~l~~L~~L~L~~N-~l~~~~p~~l~~-----l~~L~ 493 (768)
T 3rgz_A 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM------YVKTLETLILDFN-DLTGEIPSGLSN-----CTNLN 493 (768)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG------GCTTCCEEECCSS-CCCSCCCGGGGG-----CTTCC
T ss_pred cCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc------CCCCceEEEecCC-cccCcCCHHHhc-----CCCCC
Confidence 8887665665 677888888888888765545544432 3789999999885 344434433332 89999
Q ss_pred eeeeccCcCCcccCCC---CCCCccEEEEeccc---CccccCCCCCCcCEEEEccCCCccccC-----------------
Q 044195 894 KLSLLRCSKLQGTLPE---RLLLLEKLVIQSCK---QLLVTIQCLPALSELQIRGCRRVVFSS----------------- 950 (1024)
Q Consensus 894 ~L~l~~c~~L~~~lp~---~l~~L~~L~l~~c~---~l~~~l~~l~~L~~L~l~~~~~l~~~~----------------- 950 (1024)
.|++++| .+++.+|. .+++|+.|++++|. .+|..+..+++|+.|++++|+....+|
T Consensus 494 ~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 494 WISLSNN-RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp EEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred EEEccCC-ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 9999999 67778884 57899999999996 456788899999999999986332221
Q ss_pred -------------------------------------------------------CCCCCCccEEEEcCCCCcccchhhh
Q 044195 951 -------------------------------------------------------PIDFSSLKSVFLGDIANQVVLAALF 975 (1024)
Q Consensus 951 -------------------------------------------------------~~~l~~L~~L~l~~c~~l~~l~~~~ 975 (1024)
...+++|+.|++++|.....+|. .
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~-~ 651 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-E 651 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG-G
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH-H
Confidence 12346899999998765556664 5
Q ss_pred cCCCCCCCEEeeecCCCCCcccccccccccCCCCCCEEeeeCCC
Q 044195 976 EQGLPQLESLKIDSVRAPTYLWQSETRLLQDIRSLNRLHISRCP 1019 (1024)
Q Consensus 976 l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l~~L~~L~l~~c~ 1019 (1024)
+.++++|+.|++++|.-.+.+ |..++++++|+.|++++|.
T Consensus 652 l~~l~~L~~L~Ls~N~l~g~i----p~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 652 IGSMPYLFILNLGHNDISGSI----PDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCC----CGGGGGCTTCCEEECCSSC
T ss_pred HhccccCCEEeCcCCccCCCC----ChHHhCCCCCCEEECCCCc
Confidence 788999999999999666677 8899999999999999984
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=4e-29 Score=300.87 Aligned_cols=422 Identities=18% Similarity=0.131 Sum_probs=286.6
Q ss_pred CCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccC-CccccCCCCCcEeeccCCCcccc-CcccccCC
Q 044195 563 QQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDL-PNEIGNLKHLRFLNLSRTNIQIL-PQSINSLY 640 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~ 640 (1024)
+++++|.+.++. +.......|.++++|++|+|++| .+..+ |..++++++|++|+|++|.++.+ |..+++++
T Consensus 32 ~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 32 SSTKNIDLSFNP------LKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp TTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCcCEEECCCCC------cCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 789999998875 44444557899999999999999 67776 57789999999999999999987 78899999
Q ss_pred CCcEEecCCCccccccc-cccCCCCcccEEeccCCcccc--ccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCC
Q 044195 641 NLHTVLLEDCRRLKKLC-KDMGNLTKLHHLRNSNVHSLE--EMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQG 717 (1024)
Q Consensus 641 ~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~--~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 717 (1024)
+|++|++++| .+..+| ..++++++|++|++++|. +. .+|..++++++|++|+...+ .........+..+.+++.
T Consensus 105 ~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 105 SLENLVAVET-KLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQ 181 (606)
T ss_dssp TCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTT
T ss_pred cCCEEEccCC-ccccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhcccc
Confidence 9999999999 666665 679999999999999998 65 57889999999999955443 222233334444444431
Q ss_pred ---ceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCC---------cccccccc---------------------
Q 044195 718 ---TLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSC---------ISNIRNED--------------------- 764 (1024)
Q Consensus 718 ---~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---------~~~l~~~~--------------------- 764 (1024)
.+.+..... ..++.......+|+.|++++|.... +..+....
T Consensus 182 ~l~~L~l~~n~l-----~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~ 256 (606)
T 3vq2_A 182 VNLSLDMSLNPI-----DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256 (606)
T ss_dssp CCCEEECTTCCC-----CEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGT
T ss_pred ccceeeccCCCc-----ceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhh
Confidence 344433211 1122222233489999999876420 00000000
Q ss_pred -----------ccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCCCCCCCCCCc
Q 044195 765 -----------AVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLPSVGQLPVLK 833 (1024)
Q Consensus 765 -----------~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~ 833 (1024)
.............+..+++|+.|+++++....+| ++.. +++|+.|++++|.. +.+|.+ .+++|+
T Consensus 257 ~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~--~~~L~~L~l~~n~l-~~lp~~-~l~~L~ 331 (606)
T 3vq2_A 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPK--HFKWQSLSIIRCQL-KQFPTL-DLPFLK 331 (606)
T ss_dssp TGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCT--TCCCSEEEEESCCC-SSCCCC-CCSSCC
T ss_pred hhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccc--cccCCEEEcccccC-cccccC-CCCccc
Confidence 0000000111222667889999999999999888 5543 89999999999987 778877 999999
Q ss_pred eeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccc--cccccc------------------cccccCcccc
Q 044195 834 HLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWI--PRGFAQ------------------EVNEVFPKLR 893 (1024)
Q Consensus 834 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~------------------~~~~~~~~L~ 893 (1024)
.|++++|..+..+.. ..+++|++|+++++. +.... +..+.. .....+++|+
T Consensus 332 ~L~l~~n~~~~~~~~--------~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~ 402 (606)
T 3vq2_A 332 SLTLTMNKGSISFKK--------VALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQ 402 (606)
T ss_dssp EEEEESCSSCEECCC--------CCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCC
T ss_pred eeeccCCcCccchhh--------ccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCC
Confidence 999999966655421 236666666666532 11110 000000 0011256677
Q ss_pred eeeeccCcCCcccCC----CCCCCccEEEEecccC---ccccCCCCCCcCEEEEccCCCccc-cC--CCCCCCccEEEEc
Q 044195 894 KLSLLRCSKLQGTLP----ERLLLLEKLVIQSCKQ---LLVTIQCLPALSELQIRGCRRVVF-SS--PIDFSSLKSVFLG 963 (1024)
Q Consensus 894 ~L~l~~c~~L~~~lp----~~l~~L~~L~l~~c~~---l~~~l~~l~~L~~L~l~~~~~l~~-~~--~~~l~~L~~L~l~ 963 (1024)
.|++++| .+++..| ..+++|+.|++++|.. .+..+..+++|++|++++|..... .+ ...+++|++|+++
T Consensus 403 ~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 481 (606)
T 3vq2_A 403 HLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481 (606)
T ss_dssp EEECTTS-EEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred eeECCCC-ccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECC
Confidence 7777776 4443333 2467777888877752 345577788888888888863321 22 2567788899988
Q ss_pred CCCCcccchhhhcCCCCCCCEEeeecCCCCCcccccccccccCCCCCCEEeeeCCC
Q 044195 964 DIANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSETRLLQDIRSLNRLHISRCP 1019 (1024)
Q Consensus 964 ~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l~~L~~L~l~~c~ 1019 (1024)
+|. ++.++...+.++++|+.|++++| .++.+. |..+.++++|+.|++++|.
T Consensus 482 ~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~---~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 482 KCQ-LEQISWGVFDTLHRLQLLNMSHN-NLLFLD---SSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp TSC-CCEECTTTTTTCTTCCEEECCSS-CCSCEE---GGGTTTCTTCCEEECTTSC
T ss_pred CCc-CCccChhhhcccccCCEEECCCC-cCCCcC---HHHccCCCcCCEEECCCCc
Confidence 864 55555556788899999999988 444432 6678889999999998884
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=8.7e-29 Score=297.91 Aligned_cols=448 Identities=15% Similarity=0.108 Sum_probs=259.4
Q ss_pred ccccceeEEEEEccCCCCCcccccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccC-Cccc
Q 044195 535 MFSQSLRHFSYIRGECDGGTRFDFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDL-PNEI 613 (1024)
Q Consensus 535 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l-p~~l 613 (1024)
.++..++++.+..+.... .....+.++++|++|.+.++. +....+..|.++++|++|+|++| .+..+ |..+
T Consensus 30 ~l~~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 101 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQ------IYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETAL 101 (606)
T ss_dssp TSCTTCCEEECTTCCCSE-ECTTTSTTCTTCSEEECTTCC------CCEECTTTTTTCTTCCEEECTTC-CCSEECTTTT
T ss_pred CCCCcCcEEEccCCccCc-CChhHhccCccceEEECCCCc------cceeChhhccCccccCeeeCCCC-cccccChhhh
Confidence 366788999888775432 223567889999999998875 44555667899999999999999 56554 6789
Q ss_pred cCCCCCcEeeccCCCcccc-CcccccCCCCcEEecCCCccccccc-cccCCCCcccEEeccCCcccccc-CccCCCCCCC
Q 044195 614 GNLKHLRFLNLSRTNIQIL-PQSINSLYNLHTVLLEDCRRLKKLC-KDMGNLTKLHHLRNSNVHSLEEM-PKGFGKLTCL 690 (1024)
Q Consensus 614 ~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~-p~~i~~l~~L 690 (1024)
+++++|++|++++|.++.+ |..++++++|++|++++| .+..++ ..+..+++|++|++++|. +..+ |..++.+++|
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 179 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQA 179 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTC
T ss_pred cccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCc-ccccChhhhhhhccc
Confidence 9999999999999999987 677899999999999998 555542 334459999999999998 6555 4457777777
Q ss_pred C--ccCceeeCCCCCccccc-------------------------------------------------ccCcc--cCCC
Q 044195 691 T--TLCRFVVGKDSGSALRE-------------------------------------------------LKSLT--NLQG 717 (1024)
Q Consensus 691 ~--~L~~~~~~~~~~~~~~~-------------------------------------------------l~~L~--~L~~ 717 (1024)
+ .|....+. ........ +..+. .++
T Consensus 180 ~~l~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~- 257 (606)
T 3t6q_A 180 TNLSLNLNGND-IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE- 257 (606)
T ss_dssp CSEEEECTTCC-CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEE-
T ss_pred ceeEEecCCCc-cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCcee-
Confidence 7 33211111 00000000 00000 111
Q ss_pred ceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCcc-------ccccccccchhhHHHHhhccCCCCCccEEEEE
Q 044195 718 TLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCIS-------NIRNEDAVDLETQTRVLDMLKPHQKLEELTIT 790 (1024)
Q Consensus 718 ~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-------~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 790 (1024)
.+.+... . ........+..+++|+.|++++|....++ .++.++.............+..+++|+.|+++
T Consensus 258 ~L~l~~n---~-l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 258 SINLQKH---Y-FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEECTTC---C-CSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred EEEeecC---c-cCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 1211111 1 11112234667778888888877653321 11111111111111112334445555555555
Q ss_pred ecCCC-CCCcc-cCCCCCCCceEEEEecCCCCCCC--C-CCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCccee
Q 044195 791 GYGGT-KFPIW-LGDFPFSKLVSLKFEYCGMCTSL--P-SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETL 865 (1024)
Q Consensus 791 ~~~~~-~~p~~-~~~~~l~~L~~L~L~~~~~~~~l--~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L 865 (1024)
+|... .+|.. +. .+++|+.|++++|...... + .++.+++|++|++++|... .+....+ ..+++|+.|
T Consensus 334 ~n~~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~-----~~l~~L~~L 405 (606)
T 3t6q_A 334 GNTKRLELGTGCLE--NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAF-----KECPQLELL 405 (606)
T ss_dssp SCSSCCBCCSSTTT--TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-EECTTTT-----TTCTTCSEE
T ss_pred CCCcccccchhhhh--ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC-cCCHHHh-----cCCccCCeE
Confidence 55433 23322 22 2555666666555543321 2 4555566666666555322 2211111 225666666
Q ss_pred eccccccccccccccccccccccCcccceeeeccCcCCcccCC---CCCCCccEEEEecccCc------cccCCCCCCcC
Q 044195 866 CFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLP---ERLLLLEKLVIQSCKQL------LVTIQCLPALS 936 (1024)
Q Consensus 866 ~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp---~~l~~L~~L~l~~c~~l------~~~l~~l~~L~ 936 (1024)
+++++. +....+...... +++|+.|++++| .+++..| ..+++|+.|++++|... +..+..+++|+
T Consensus 406 ~l~~n~-l~~~~~~~~~~~----l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~ 479 (606)
T 3t6q_A 406 DLAFTR-LKVKDAQSPFQN----LHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479 (606)
T ss_dssp ECTTCC-EECCTTCCTTTT----CTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred ECCCCc-CCCcccchhhhC----cccCCEEECCCC-ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence 666532 222221111111 677777777777 5553444 34577777777777522 13456677777
Q ss_pred EEEEccCCCccccC---CCCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCCCCcccccccccccCCCCCCEE
Q 044195 937 ELQIRGCRRVVFSS---PIDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSETRLLQDIRSLNRL 1013 (1024)
Q Consensus 937 ~L~l~~~~~l~~~~---~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l~~L~~L 1013 (1024)
+|++++|. +...+ ...+++|++|++++|. ++.++...+.++++| .|++++| .++.++ |..+..+++|+.|
T Consensus 480 ~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~---~~~~~~l~~L~~L 552 (606)
T 3t6q_A 480 ILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHNR-LTSSSIEALSHLKGI-YLNLASN-HISIIL---PSLLPILSQQRTI 552 (606)
T ss_dssp EEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCGGGGGGGTTCCSC-EEECCSS-CCCCCC---GGGHHHHHTSSEE
T ss_pred EEECCCCc-cCccChhhhccccCCCEEECCCCc-cCcCChhHhCccccc-EEECcCC-cccccC---HhhcccCCCCCEE
Confidence 77777776 33332 2456677777777653 444444566777777 7777777 444442 4456777778888
Q ss_pred eeeCCC
Q 044195 1014 HISRCP 1019 (1024)
Q Consensus 1014 ~l~~c~ 1019 (1024)
++++||
T Consensus 553 ~l~~N~ 558 (606)
T 3t6q_A 553 NLRQNP 558 (606)
T ss_dssp ECTTCC
T ss_pred eCCCCC
Confidence 887776
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=1e-28 Score=295.34 Aligned_cols=429 Identities=17% Similarity=0.124 Sum_probs=287.5
Q ss_pred cccceeEEEEEccCCCCCcccccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCC-cccc
Q 044195 536 FSQSLRHFSYIRGECDGGTRFDFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLP-NEIG 614 (1024)
Q Consensus 536 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp-~~l~ 614 (1024)
++..++++.+..+.... .....+.++++|++|.+.++. +....+..|.++++|++|+|++| .+..+| ..++
T Consensus 26 l~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~------i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 97 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFS 97 (570)
T ss_dssp SCSSCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTT
T ss_pred ccccccEEEccCCccCc-cChhHhhCCCCceEEECCCCc------CCccCcccccCchhCCEEeCcCC-cCCccCHhhhc
Confidence 56778888887764332 123357789999999998875 33444456788999999999999 677765 7789
Q ss_pred CCCCCcEeeccCCCccccCc-ccccCCCCcEEecCCCcccc--ccccccCCCCcccEEeccCCccccccC-ccCCCCCCC
Q 044195 615 NLKHLRFLNLSRTNIQILPQ-SINSLYNLHTVLLEDCRRLK--KLCKDMGNLTKLHHLRNSNVHSLEEMP-KGFGKLTCL 690 (1024)
Q Consensus 615 ~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~l~~L 690 (1024)
++++|++|++++|.++.+|. .++++++|++|++++| .+. .+|..++++++|++|++++|. +..++ ..++.+++|
T Consensus 98 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQM 175 (570)
T ss_dssp TCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTC
T ss_pred CccccccccccccccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhcc
Confidence 99999999999999998876 6899999999999998 554 368889999999999999998 55554 456666666
Q ss_pred ----CccCceeeCCCCCcccccccCcccCCCceEeccCCC----------------------------------------
Q 044195 691 ----TTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLEN---------------------------------------- 726 (1024)
Q Consensus 691 ----~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~---------------------------------------- 726 (1024)
..|....+ .........+..+ .|+ .+.+.....
T Consensus 176 ~~~~~~L~l~~n-~l~~~~~~~~~~~-~L~-~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 252 (570)
T 2z63_A 176 PLLNLSLDLSLN-PMNFIQPGAFKEI-RLH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252 (570)
T ss_dssp TTCCCEEECTTC-CCCEECTTTTTTC-EEE-EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTG
T ss_pred chhhhhcccCCC-CceecCHHHhccC-cce-eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhc
Confidence 33321111 0010011111111 111 222111000
Q ss_pred --------------CCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEec
Q 044195 727 --------------VKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGY 792 (1024)
Q Consensus 727 --------------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 792 (1024)
........+..+..+++|+.|+++++.... .+..+..+ +|+.|++++|
T Consensus 253 ~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----------------l~~~~~~~-~L~~L~l~~n 314 (570)
T 2z63_A 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-----------------VKDFSYNF-GWQHLELVNC 314 (570)
T ss_dssp GGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-----------------CCBCCSCC-CCSEEEEESC
T ss_pred cccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-----------------hhhhhccC-CccEEeeccC
Confidence 000111122334455666666666654311 12234445 7777777777
Q ss_pred CCCCCCcccCCCCCCCceEEEEecCCCCCCCCCCCCCCCCceeeecCCCCceEe--ccccccCCCCCCCCCcceeecccc
Q 044195 793 GGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLPSVGQLPVLKHLEMRGMDRVKSV--GLEFYGNSCSAPFPSLETLCFVNM 870 (1024)
Q Consensus 793 ~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~ 870 (1024)
....+|.+ .+++|+.|++++|......+. ..+++|++|++++|...... +..+ ..+++|++|+++++
T Consensus 315 ~~~~l~~~----~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~------~~~~~L~~L~l~~n 383 (570)
T 2z63_A 315 KFGQFPTL----KLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSD------FGTTSLKYLDLSFN 383 (570)
T ss_dssp BCSSCCBC----BCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHH------HTCSCCCEEECCSC
T ss_pred cccccCcc----cccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccc------cccCccCEEECCCC
Confidence 77766653 267788888887765544443 67888888888877533221 1222 23788999998875
Q ss_pred ccccccccccccccccccCcccceeeeccCcCCcccCC----CCCCCccEEEEecccC---ccccCCCCCCcCEEEEccC
Q 044195 871 QEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLP----ERLLLLEKLVIQSCKQ---LLVTIQCLPALSELQIRGC 943 (1024)
Q Consensus 871 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp----~~l~~L~~L~l~~c~~---l~~~l~~l~~L~~L~l~~~ 943 (1024)
. +...... +.. +++|+.|++++| .+++..| ..+++|+.|++++|.. .+..+..+++|++|++++|
T Consensus 384 ~-l~~~~~~-~~~-----l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 455 (570)
T 2z63_A 384 G-VITMSSN-FLG-----LEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455 (570)
T ss_dssp S-EEEEEEE-EET-----CTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred c-ccccccc-ccc-----cCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence 3 3333222 222 899999999998 5654444 4679999999999963 3456788999999999999
Q ss_pred CCc-cccC--CCCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCCCCcccccccccccCCCCCCEEeeeCCC
Q 044195 944 RRV-VFSS--PIDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSETRLLQDIRSLNRLHISRCP 1019 (1024)
Q Consensus 944 ~~l-~~~~--~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l~~L~~L~l~~c~ 1019 (1024)
... ..+| ...+++|+.|++++|. ++.++...+.++++|+.|++++| .++.++ |..+..+++|+.|++++||
T Consensus 456 ~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 456 SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSVP---DGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCC---TTTTTTCTTCCEEECCSSC
T ss_pred cCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-cCCCCC---HHHhhcccCCcEEEecCCc
Confidence 843 1233 3578899999999875 55565557789999999999999 666663 4578999999999999975
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=2.1e-28 Score=298.77 Aligned_cols=151 Identities=17% Similarity=0.100 Sum_probs=118.7
Q ss_pred cccceeEEEEEccCCCCCcccccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCc-ccc
Q 044195 536 FSQSLRHFSYIRGECDGGTRFDFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPN-EIG 614 (1024)
Q Consensus 536 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~-~l~ 614 (1024)
++..++++.+..+.... .....+.++++|++|.+.++. +....+..+.++++|++|+|++| .+..+|. .++
T Consensus 23 ~~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~ 94 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNT------ISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFA 94 (680)
T ss_dssp SCTTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSC------CCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred cCCCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCc------cCccCHHHHhcccCcCEEECCCC-ccCccChhhhc
Confidence 56788999988775433 233457889999999998765 44444566788999999999999 7888886 589
Q ss_pred CCCCCcEeeccCCCccccC-cccccCCCCcEEecCCCccccccccccCCCCcccEEeccCCccccccCcc-C--CCCCCC
Q 044195 615 NLKHLRFLNLSRTNIQILP-QSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKG-F--GKLTCL 690 (1024)
Q Consensus 615 ~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-i--~~l~~L 690 (1024)
++++|++|++++|.++.+| ..++++++|++|++++|......|..++++++|++|++++|. +..++.. + ..+++|
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSL 173 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEE
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccc
Confidence 9999999999999999886 569999999999999995444456678899999999999998 6665543 2 345677
Q ss_pred CccCc
Q 044195 691 TTLCR 695 (1024)
Q Consensus 691 ~~L~~ 695 (1024)
+.|+.
T Consensus 174 ~~L~L 178 (680)
T 1ziw_A 174 KKLEL 178 (680)
T ss_dssp SEEEC
T ss_pred cEEEC
Confidence 77744
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=2.7e-28 Score=293.60 Aligned_cols=422 Identities=15% Similarity=0.105 Sum_probs=236.7
Q ss_pred CCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccC-CccccCCCCCcEeeccCCCcccc-CcccccCC
Q 044195 563 QQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDL-PNEIGNLKHLRFLNLSRTNIQIL-PQSINSLY 640 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~ 640 (1024)
.+++.|.+.++. +....+..|.++++|++|+|++| .+..+ |..|+++++|++|+|++|.+..+ |..+++++
T Consensus 33 ~~l~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 33 NSTECLEFSFNV------LPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp TTCCEEECTTCC------CSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred CcCcEEEccCCc------cCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 468999998875 55555667899999999999999 56655 78899999999999999999865 77899999
Q ss_pred CCcEEecCCCcccccc-ccccCCCCcccEEeccCCccccccC-ccCCCCCCCCccCceeeCCCCCcccccccCcccCCC-
Q 044195 641 NLHTVLLEDCRRLKKL-CKDMGNLTKLHHLRNSNVHSLEEMP-KGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQG- 717 (1024)
Q Consensus 641 ~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~- 717 (1024)
+|++|++++| .+..+ |..++++++|++|++++|. +..++ +.+..+++|+.|....+. ........+..+.+++.
T Consensus 106 ~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 106 ALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNL 182 (606)
T ss_dssp TCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSE
T ss_pred cccEeecccc-CcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCc-ccccChhhhhhhccccee
Confidence 9999999999 56665 6679999999999999998 66652 344458888888544332 22222333455555541
Q ss_pred ceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCC---------------------CCc-----c----------ccc
Q 044195 718 TLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNR---------------------SCI-----S----------NIR 761 (1024)
Q Consensus 718 ~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~---------------------~~~-----~----------~l~ 761 (1024)
.+.+........ .+..+ ...+|+.|++.++.. ... . .++
T Consensus 183 ~L~l~~n~l~~~----~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~ 257 (606)
T 3t6q_A 183 SLNLNGNDIAGI----EPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257 (606)
T ss_dssp EEECTTCCCCEE----CTTTT-TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEE
T ss_pred EEecCCCccCcc----ChhHh-hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCcee
Confidence 122222111000 00011 112233333222210 000 0 000
Q ss_pred cccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCC-CCCCCCCCceeeecCC
Q 044195 762 NEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLP-SVGQLPVLKHLEMRGM 840 (1024)
Q Consensus 762 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~ 840 (1024)
.++.............+..+++|+.|++++|....+|.++.. +++|++|++++|......| .+..+++|++|++++|
T Consensus 258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG--LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335 (606)
T ss_dssp EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCS--CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred EEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcc--cccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence 001100000111123366677888888888888788877654 7778888887776544433 5666777777777766
Q ss_pred CCceEeccccccCCCCCCCCCcceeeccccc-------------------------cccccccccccccccccCccccee
Q 044195 841 DRVKSVGLEFYGNSCSAPFPSLETLCFVNMQ-------------------------EWEEWIPRGFAQEVNEVFPKLRKL 895 (1024)
Q Consensus 841 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------------------~l~~~~~~~~~~~~~~~~~~L~~L 895 (1024)
.....++.... ..+++|++|+++++. .+....+..+.. +++|+.|
T Consensus 336 ~~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L 405 (606)
T 3t6q_A 336 TKRLELGTGCL-----ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE-----CPQLELL 405 (606)
T ss_dssp SSCCBCCSSTT-----TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT-----CTTCSEE
T ss_pred Ccccccchhhh-----hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC-----CccCCeE
Confidence 54333333221 124555555555422 112211111111 4555555
Q ss_pred eeccCcCCcccCC----CCCCCccEEEEecccC---ccccCCCCCCcCEEEEccCCCccc-c----CCCCCCCccEEEEc
Q 044195 896 SLLRCSKLQGTLP----ERLLLLEKLVIQSCKQ---LLVTIQCLPALSELQIRGCRRVVF-S----SPIDFSSLKSVFLG 963 (1024)
Q Consensus 896 ~l~~c~~L~~~lp----~~l~~L~~L~l~~c~~---l~~~l~~l~~L~~L~l~~~~~l~~-~----~~~~l~~L~~L~l~ 963 (1024)
++++| .+++..| ..+++|+.|++++|.. .+..+..+++|++|++++|..... . ....+++|+.|+++
T Consensus 406 ~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 406 DLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484 (606)
T ss_dssp ECTTC-CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECT
T ss_pred ECCCC-cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECC
Confidence 55555 3332222 2345555555555531 123345555566666655552211 1 12345566666666
Q ss_pred CCCCcccchhhhcCCCCCCCEEeeecCCCCCcccccccccccCCCCCCEEeeeCC
Q 044195 964 DIANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSETRLLQDIRSLNRLHISRC 1018 (1024)
Q Consensus 964 ~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l~~L~~L~l~~c 1018 (1024)
+|. ++.++...+.++++|+.|++++| .++... |..+.++++| .|++++|
T Consensus 485 ~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~---~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 485 FCD-LSSIDQHAFTSLKMMNHVDLSHN-RLTSSS---IEALSHLKGI-YLNLASN 533 (606)
T ss_dssp TSC-CCEECTTTTTTCTTCCEEECCSS-CCCGGG---GGGGTTCCSC-EEECCSS
T ss_pred CCc-cCccChhhhccccCCCEEECCCC-ccCcCC---hhHhCccccc-EEECcCC
Confidence 543 33343344556666666666666 333321 4456666666 6666665
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.7e-29 Score=305.29 Aligned_cols=377 Identities=14% Similarity=0.126 Sum_probs=230.4
Q ss_pred cccCCccccCCCCCcEeeccCCCccc------------------cCcccc--cCCCCcEEecCCCccccccccccCCCCc
Q 044195 606 IIDLPNEIGNLKHLRFLNLSRTNIQI------------------LPQSIN--SLYNLHTVLLEDCRRLKKLCKDMGNLTK 665 (1024)
Q Consensus 606 l~~lp~~l~~l~~L~~L~L~~~~i~~------------------lp~~i~--~L~~L~~L~l~~~~~l~~lp~~i~~L~~ 665 (1024)
+..+|..++++++|++|+|++|.++. +|..++ ++++|++|++++|.....+|..++++++
T Consensus 437 L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~ 516 (876)
T 4ecn_A 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516 (876)
T ss_dssp EEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred ccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence 33466666666666666666666665 666655 6666666666666555566666666666
Q ss_pred ccEEeccCCcccc--ccCccCCCCC-------CCCccCceeeCCCCCcccc--cccCcccCCCceEeccCCCCCCcccch
Q 044195 666 LHHLRNSNVHSLE--EMPKGFGKLT-------CLTTLCRFVVGKDSGSALR--ELKSLTNLQGTLEISSLENVKCVGDAI 734 (1024)
Q Consensus 666 L~~L~l~~~~~l~--~~p~~i~~l~-------~L~~L~~~~~~~~~~~~~~--~l~~L~~L~~~L~i~~l~~~~~~~~~~ 734 (1024)
|++|++++|..+. .+|..+++++ +|+.|....+... ..+. .+..+++|+ .|.+...... .+
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~-~L~Ls~N~l~-----~l 588 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVKLG-LLDCVHNKVR-----HL 588 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTTCC-EEECTTSCCC-----BC
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhhcCCCCC-EEECCCCCcc-----cc
Confidence 6666666664222 3555444333 5555533222211 2222 344555555 4544432211 23
Q ss_pred hhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCC-ccEEEEEecCCCCCCcccCCCCCCCceEEE
Q 044195 735 EAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQK-LEELTITGYGGTKFPIWLGDFPFSKLVSLK 813 (1024)
Q Consensus 735 ~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~ 813 (1024)
+ .+..+++|+.|++++|... ..+..+..+++ |+.|++++|.+..+|.++.....++|+.|+
T Consensus 589 p-~~~~L~~L~~L~Ls~N~l~-----------------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 589 E-AFGTNVKLTDLKLDYNQIE-----------------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp C-CCCTTSEESEEECCSSCCS-----------------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEE
T ss_pred h-hhcCCCcceEEECcCCccc-----------------cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEE
Confidence 3 5677788888888888762 12344667777 999999999888888877654455699999
Q ss_pred EecCCCCCCCCCCC------CCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeecccccccccccccccccc--c
Q 044195 814 FEYCGMCTSLPSVG------QLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQE--V 885 (1024)
Q Consensus 814 L~~~~~~~~l~~l~------~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~--~ 885 (1024)
+++|.....+|.+. .+++|+.|++++|. +..++..+.. .+++|+.|+++++ .+..+....+... .
T Consensus 651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~-----~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFA-----TGSPISTIILSNN-LMTSIPENSLKPKDGN 723 (876)
T ss_dssp CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHH-----TTCCCSEEECCSC-CCSCCCTTSSSCTTSC
T ss_pred CcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHc-----cCCCCCEEECCCC-cCCccChHHhcccccc
Confidence 99988766555332 45689999998875 3355444332 2788999998874 4443322211110 0
Q ss_pred cccCcccceeeeccCcCCcccCCC-----CCCCccEEEEeccc--CccccCCCCCCcCEEEEccCC------CccccCC-
Q 044195 886 NEVFPKLRKLSLLRCSKLQGTLPE-----RLLLLEKLVIQSCK--QLLVTIQCLPALSELQIRGCR------RVVFSSP- 951 (1024)
Q Consensus 886 ~~~~~~L~~L~l~~c~~L~~~lp~-----~l~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~------~l~~~~~- 951 (1024)
...+++|+.|++++| .++ .+|. .+++|+.|++++|. .+|..+..+++|+.|++++|+ ....+|.
T Consensus 724 l~nl~~L~~L~Ls~N-~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFN-KLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp CTTGGGCCEEECCSS-CCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred ccccCCccEEECCCC-CCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 011348999999998 777 6772 57889999998884 456677788999999997743 2233332
Q ss_pred -CCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCCCCcccccc--cc---cccCCCCCCEEeeeCCCCCc
Q 044195 952 -IDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSE--TR---LLQDIRSLNRLHISRCPQLI 1022 (1024)
Q Consensus 952 -~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~--p~---~l~~l~~L~~L~l~~c~~L~ 1022 (1024)
..+++|+.|++++|.. +.+|... .++|+.|+|++|+ +..+.... |. ....+..-+..+|.+||.|.
T Consensus 802 l~~L~~L~~L~Ls~N~L-~~Ip~~l---~~~L~~LdLs~N~-l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~L~ 873 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSNDI-RKVDEKL---TPQLYILDIADNP-NISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALG 873 (876)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSCC---CSSSCEEECCSCT-TCEEECGGGHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred HhcCCCCCEEECCCCCC-CccCHhh---cCCCCEEECCCCC-CCccChHHccccccchheeecCCCccccCCCCCcc
Confidence 4578999999998754 7777642 2689999999985 33332110 00 11112222344678888764
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1e-29 Score=305.06 Aligned_cols=351 Identities=15% Similarity=0.130 Sum_probs=205.4
Q ss_pred CCcccc--CCCCCcEeeccCCCcc-ccCcccccCCCCcEEecCCCcccc--ccccccCCC------CcccEEeccCCccc
Q 044195 609 LPNEIG--NLKHLRFLNLSRTNIQ-ILPQSINSLYNLHTVLLEDCRRLK--KLCKDMGNL------TKLHHLRNSNVHSL 677 (1024)
Q Consensus 609 lp~~l~--~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~--~lp~~i~~L------~~L~~L~l~~~~~l 677 (1024)
+|..++ ++++|++|+|++|.+. .+|..++++++|++|++++|..+. .+|..++++ ++|++|++++|. +
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-L 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-C
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-C
Confidence 555555 5555555555555433 445555555555555555553122 345444443 555555555554 4
Q ss_pred cccCc--cCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCC
Q 044195 678 EEMPK--GFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRS 755 (1024)
Q Consensus 678 ~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 755 (1024)
..+|. .++++++|+.| .+..... ...++ .+..+++|+.|++++|...
T Consensus 318 ~~ip~~~~l~~l~~L~~L--------------------------~L~~N~l----~g~ip-~~~~l~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGML--------------------------ECLYNQL----EGKLP-AFGSEIKLASLNLAYNQIT 366 (636)
T ss_dssp SSCCCHHHHTTCTTCCEE--------------------------ECCSCCC----EEECC-CCEEEEEESEEECCSSEEE
T ss_pred CccCchhhhccCCCCCEE--------------------------eCcCCcC----ccchh-hhCCCCCCCEEECCCCccc
Confidence 45554 45555555444 3322111 01122 3455567777777776541
Q ss_pred CccccccccccchhhHHHHhhccCCCCC-ccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCC-CCC------
Q 044195 756 CISNIRNEDAVDLETQTRVLDMLKPHQK-LEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLP-SVG------ 827 (1024)
Q Consensus 756 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~------ 827 (1024)
..+..+..+++ |+.|++++|....+|.++....+++|+.|++++|.....+| .+.
T Consensus 367 -----------------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 367 -----------------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp -----------------ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred -----------------cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 12234556677 88888888888788877765445588888888887666555 455
Q ss_pred -CCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeecccccccccccccccccc--ccccCcccceeeeccCcCCc
Q 044195 828 -QLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQE--VNEVFPKLRKLSLLRCSKLQ 904 (1024)
Q Consensus 828 -~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~c~~L~ 904 (1024)
.+++|++|++++|. +..++..... .+++|+.|+++++ .+..+....+... ....+++|+.|++++| .++
T Consensus 430 ~~~~~L~~L~Ls~N~-l~~lp~~~~~-----~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~ 501 (636)
T 4eco_A 430 FKGINVSSINLSNNQ-ISKFPKELFS-----TGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLT 501 (636)
T ss_dssp CCCCCEEEEECCSSC-CCSCCTHHHH-----TTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCC
T ss_pred ccCCCCCEEECcCCc-cCcCCHHHHc-----cCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCC-cCC
Confidence 66788888888764 3344443322 2678888888874 3333322211110 0001238888888888 677
Q ss_pred ccCCC-----CCCCccEEEEeccc--CccccCCCCCCcCEEEEccCC------CccccC--CCCCCCccEEEEcCCCCcc
Q 044195 905 GTLPE-----RLLLLEKLVIQSCK--QLLVTIQCLPALSELQIRGCR------RVVFSS--PIDFSSLKSVFLGDIANQV 969 (1024)
Q Consensus 905 ~~lp~-----~l~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~------~l~~~~--~~~l~~L~~L~l~~c~~l~ 969 (1024)
.+|. .+++|+.|++++|. .+|..+..+++|+.|++++|+ ....+| ...+++|++|++++|.. +
T Consensus 502 -~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~ 579 (636)
T 4eco_A 502 -KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-R 579 (636)
T ss_dssp -BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-C
T ss_pred -ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-C
Confidence 6772 67788888888874 456677788899999986543 233333 24578899999988654 7
Q ss_pred cchhhhcCCCCCCCEEeeecCCCCCcccccc--ccccc---CCCCCCEEeeeCCCCCc
Q 044195 970 VLAALFEQGLPQLESLKIDSVRAPTYLWQSE--TRLLQ---DIRSLNRLHISRCPQLI 1022 (1024)
Q Consensus 970 ~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~--p~~l~---~l~~L~~L~l~~c~~L~ 1022 (1024)
.+|.... ++|+.|++++|+. ..+.... |.... .+...+..++.+|+.|+
T Consensus 580 ~ip~~~~---~~L~~L~Ls~N~l-~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 580 KVNEKIT---PNISVLDIKDNPN-ISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp BCCSCCC---TTCCEEECCSCTT-CEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred ccCHhHh---CcCCEEECcCCCC-ccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 7775422 7899999999843 3332110 11112 22334666888998875
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.2e-27 Score=282.12 Aligned_cols=405 Identities=16% Similarity=0.153 Sum_probs=241.1
Q ss_pred CCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccC-CccccCCCCCcEeeccCCCccccCcccccCCC
Q 044195 563 QQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDL-PNEIGNLKHLRFLNLSRTNIQILPQSINSLYN 641 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~ 641 (1024)
++|+.|.+.++. +....+..|..+++|++|+|++| .+..+ |..++++++|++|+|++|.++.+|.. .+++
T Consensus 21 ~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 91 (520)
T 2z7x_B 21 QKTTILNISQNY------ISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVN 91 (520)
T ss_dssp TTCSEEECCSSC------CCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCC
T ss_pred ccccEEECCCCc------ccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCC
Confidence 455555555443 22222334555555555555555 34443 44555555555555555555555544 5555
Q ss_pred CcEEecCCCccccc--cccccCCCCcccEEeccCCccccccCccCCCCCCC--CccCceeeCCC-CCccccccc------
Q 044195 642 LHTVLLEDCRRLKK--LCKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCL--TTLCRFVVGKD-SGSALRELK------ 710 (1024)
Q Consensus 642 L~~L~l~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L--~~L~~~~~~~~-~~~~~~~l~------ 710 (1024)
|++|++++| .+.. +|..++++++|++|++++|. +.. ..++.+++| +.|....+... ....+..+.
T Consensus 92 L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~ 167 (520)
T 2z7x_B 92 LKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES 167 (520)
T ss_dssp CSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEE
T ss_pred ccEEeccCC-ccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeecccccccccccccccccccce
Confidence 555555555 3322 34555555555555555554 332 223444444 44432222110 111112222
Q ss_pred --------------------CcccCCCceEeccCCC---CCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccc
Q 044195 711 --------------------SLTNLQGTLEISSLEN---VKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVD 767 (1024)
Q Consensus 711 --------------------~L~~L~~~L~i~~l~~---~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~ 767 (1024)
.++.|+ .+.+..... ...... ....+..+++|+.|++..+... .
T Consensus 168 l~l~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~-----------~ 234 (520)
T 2z7x_B 168 LHIVFPTNKEFHFILDVSVKTVANLE-LSNIKCVLEDNKCSYFLS-ILAKLQTNPKLSNLTLNNIETT-----------W 234 (520)
T ss_dssp EEEECCSSSCCCCCCCCCCTTCSEEE-ECCEEECCSTTTTHHHHH-HHHGGGGCTTCCEEEEEEEEEE-----------H
T ss_pred EEEEeccCcchhhhhhhhhhccccee-eccccccccccccceeec-chhhhccccchhhccccccccC-----------H
Confidence 223222 222222110 000111 1224566777777777766531 0
Q ss_pred hhhHHHHhhccCCCCCccEEEEEecCCC-CCCcccCC---CCCCCceEEEEecCCCCCCCC--CCCCC---CCCceeeec
Q 044195 768 LETQTRVLDMLKPHQKLEELTITGYGGT-KFPIWLGD---FPFSKLVSLKFEYCGMCTSLP--SVGQL---PVLKHLEMR 838 (1024)
Q Consensus 768 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~---~~l~~L~~L~L~~~~~~~~l~--~l~~l---~~L~~L~L~ 838 (1024)
.........+ ..++|+.|++++|... .+|.++.. ..+++|+.+++++|.. .+| .+..+ ++|+.|+++
T Consensus 235 -~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 235 -NSFIRILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp -HHHHHHHHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEE
T ss_pred -HHHHHHHHHh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcC
Confidence 0011111111 2358999999998876 78877621 2388999999998875 444 22222 579999999
Q ss_pred CCCCceEeccccccCCCCCCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCcc--cCC---CCCCC
Q 044195 839 GMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQG--TLP---ERLLL 913 (1024)
Q Consensus 839 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~--~lp---~~l~~ 913 (1024)
+|.... +. + ...+++|++|+++++ .+.+..+..+.. +++|+.|++++| .+++ .+| ..+++
T Consensus 311 ~n~l~~-~~--~-----~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-----l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~ 375 (520)
T 2z7x_B 311 GTRMVH-ML--C-----PSKISPFLHLDFSNN-LLTDTVFENCGH-----LTELETLILQMN-QLKELSKIAEMTTQMKS 375 (520)
T ss_dssp SSCCCC-CC--C-----CSSCCCCCEEECCSS-CCCTTTTTTCCC-----CSSCCEEECCSS-CCCBHHHHHHHHTTCTT
T ss_pred CCcccc-cc--c-----hhhCCcccEEEeECC-ccChhhhhhhcc-----CCCCCEEEccCC-ccCccccchHHHhhCCC
Confidence 875322 11 1 134899999999985 444433433322 899999999999 6763 333 57899
Q ss_pred ccEEEEecccC---ccc-cCCCCCCcCEEEEccCCCccccCCCCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeec
Q 044195 914 LEKLVIQSCKQ---LLV-TIQCLPALSELQIRGCRRVVFSSPIDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDS 989 (1024)
Q Consensus 914 L~~L~l~~c~~---l~~-~l~~l~~L~~L~l~~~~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~ 989 (1024)
|+.|++++|.. +|. .+..+++|++|++++|......+....++|+.|++++| .++.+|.... ++++|+.|++++
T Consensus 376 L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~-~l~~L~~L~L~~ 453 (520)
T 2z7x_B 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVV-KLEALQELNVAS 453 (520)
T ss_dssp CCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGG-GCTTCCEEECCS
T ss_pred CCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhh-cCCCCCEEECCC
Confidence 99999999863 444 37788999999999998434333333369999999986 5668886544 899999999999
Q ss_pred CCCCCccccccccc-ccCCCCCCEEeeeCCC
Q 044195 990 VRAPTYLWQSETRL-LQDIRSLNRLHISRCP 1019 (1024)
Q Consensus 990 c~~l~~l~~~~p~~-l~~l~~L~~L~l~~c~ 1019 (1024)
| .++.+ |.. +..+++|+.|++++||
T Consensus 454 N-~l~~l----~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 454 N-QLKSV----PDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp S-CCCCC----CTTTTTTCTTCCEEECCSSC
T ss_pred C-cCCcc----CHHHhccCCcccEEECcCCC
Confidence 9 77787 444 8899999999999987
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=1.9e-27 Score=295.73 Aligned_cols=152 Identities=16% Similarity=0.124 Sum_probs=113.9
Q ss_pred cccceeEEEEEccCCCCCcccccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccC-Ccccc
Q 044195 536 FSQSLRHFSYIRGECDGGTRFDFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDL-PNEIG 614 (1024)
Q Consensus 536 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l-p~~l~ 614 (1024)
.+..++++.+..+.... .....+.++++|++|.+.++.. .....+..|.++++|++|+|++| .+..+ |..++
T Consensus 22 lp~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~-----~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYT-----PLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQ 94 (844)
T ss_dssp SCTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCC-----CCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSC
T ss_pred CCCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCC-----ccccCHHHhcCCCCCCEEECCCC-cCcccCHhHcc
Confidence 67788999888775432 2345678899999999988731 11222556789999999999999 56665 78899
Q ss_pred CCCCCcEeeccCCCccc-cCcc--cccCCCCcEEecCCCcccccc--ccccCCCCcccEEeccCCccccccCccCCCC--
Q 044195 615 NLKHLRFLNLSRTNIQI-LPQS--INSLYNLHTVLLEDCRRLKKL--CKDMGNLTKLHHLRNSNVHSLEEMPKGFGKL-- 687 (1024)
Q Consensus 615 ~l~~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l-- 687 (1024)
++++|++|+|++|.+.. +|.. +.++++|++|++++| .+..+ +..++++++|++|++++|......|..++.+
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 99999999999999885 5655 889999999999998 45444 2468999999999999988333445556555
Q ss_pred CCCCccCc
Q 044195 688 TCLTTLCR 695 (1024)
Q Consensus 688 ~~L~~L~~ 695 (1024)
++|+.|..
T Consensus 174 ~~L~~L~L 181 (844)
T 3j0a_A 174 KTLSFFSL 181 (844)
T ss_dssp CSSCCCEE
T ss_pred CccceEEC
Confidence 66666643
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.2e-28 Score=295.81 Aligned_cols=407 Identities=15% Similarity=0.165 Sum_probs=274.9
Q ss_pred CCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcc-------------cCC-------------------
Q 044195 563 QQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNII-------------DLP------------------- 610 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~-------------~lp------------------- 610 (1024)
.+++.|.+.++. +.+..++.+..+++|++|+|++|. +. .+|
T Consensus 81 ~~V~~L~L~~~~------l~g~lp~~l~~L~~L~~L~Ls~N~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~ 153 (636)
T 4eco_A 81 GRVTGLSLEGFG------ASGRVPDAIGQLTELEVLALGSHG-EKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYD 153 (636)
T ss_dssp CCEEEEECTTSC------CEEEECGGGGGCTTCCEEESCCGG-GGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCC
T ss_pred CCEEEEEecCcc------cCCcCChHHhcCccceEEECcCCc-cccCCccccccccccCchHHHHHHHHhhHHHhhhccC
Confidence 467888887764 556777888999999999998883 21 000
Q ss_pred --cccc-------------------CCCCCcEeecc--CCCccccCcccccCCCCcEEecCCCccccc------------
Q 044195 611 --NEIG-------------------NLKHLRFLNLS--RTNIQILPQSINSLYNLHTVLLEDCRRLKK------------ 655 (1024)
Q Consensus 611 --~~l~-------------------~l~~L~~L~L~--~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~------------ 655 (1024)
..+. ....++.+.+. +|.++.+|..++++++|++|++++|. +..
T Consensus 154 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~ 232 (636)
T 4eco_A 154 PREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENS 232 (636)
T ss_dssp GGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTS
T ss_pred chhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-ccccccccccccccc
Confidence 0000 01112222221 34555677777777777777777773 444
Q ss_pred ------cccccC--CCCcccEEeccCCccccccCccCCCCCCCCccCceeeCCCCC-cccccccCc------ccCCCceE
Q 044195 656 ------LCKDMG--NLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSG-SALRELKSL------TNLQGTLE 720 (1024)
Q Consensus 656 ------lp~~i~--~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~-~~~~~l~~L------~~L~~~L~ 720 (1024)
+|..++ ++++|++|++++|...+.+|..++++++|+.|....+....+ ..+..+..+ ++|+ .|.
T Consensus 233 ~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~-~L~ 311 (636)
T 4eco_A 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ-IIY 311 (636)
T ss_dssp HHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC-EEE
T ss_pred chhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC-EEE
Confidence 777777 777777777777765666777777777777774433321222 233334333 5565 565
Q ss_pred eccCCCCCCcccchhh--hcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCC
Q 044195 721 ISSLENVKCVGDAIEA--QLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFP 798 (1024)
Q Consensus 721 i~~l~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p 798 (1024)
+...... .++. .+..+++|+.|+++.|... .. ++.+..+++|+.|++++|....+|
T Consensus 312 L~~n~l~-----~ip~~~~l~~l~~L~~L~L~~N~l~----------------g~-ip~~~~l~~L~~L~L~~N~l~~lp 369 (636)
T 4eco_A 312 IGYNNLK-----TFPVETSLQKMKKLGMLECLYNQLE----------------GK-LPAFGSEIKLASLNLAYNQITEIP 369 (636)
T ss_dssp CCSSCCS-----SCCCHHHHTTCTTCCEEECCSCCCE----------------EE-CCCCEEEEEESEEECCSSEEEECC
T ss_pred CCCCcCC-----ccCchhhhccCCCCCEEeCcCCcCc----------------cc-hhhhCCCCCCCEEECCCCcccccc
Confidence 5443221 3455 6788999999999998762 01 125667889999999999988999
Q ss_pred cccCCCCCCC-ceEEEEecCCCCCCCC-CCCC--CCCCceeeecCCCCceEeccccccC-CCCCCCCCcceeeccccccc
Q 044195 799 IWLGDFPFSK-LVSLKFEYCGMCTSLP-SVGQ--LPVLKHLEMRGMDRVKSVGLEFYGN-SCSAPFPSLETLCFVNMQEW 873 (1024)
Q Consensus 799 ~~~~~~~l~~-L~~L~L~~~~~~~~l~-~l~~--l~~L~~L~L~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l 873 (1024)
.++.. +++ |+.|++++|... .+| .++. +++|+.|++++|.....++..+... .....+++|+.|+++++ .+
T Consensus 370 ~~l~~--l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l 445 (636)
T 4eco_A 370 ANFCG--FTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QI 445 (636)
T ss_dssp TTSEE--ECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CC
T ss_pred Hhhhh--hcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-cc
Confidence 88765 788 999999999865 666 4454 4589999999986544333322200 01113679999999984 44
Q ss_pred cccccccccccccccCcccceeeeccCcCCcccCCCC-C----------CCccEEEEeccc--CccccCC--CCCCcCEE
Q 044195 874 EEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLPER-L----------LLLEKLVIQSCK--QLLVTIQ--CLPALSEL 938 (1024)
Q Consensus 874 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~-l----------~~L~~L~l~~c~--~l~~~l~--~l~~L~~L 938 (1024)
..+... .... +++|+.|++++| .++ .+|.. + ++|+.|++++|. .+|..+. .+++|++|
T Consensus 446 ~~lp~~-~~~~----l~~L~~L~Ls~N-~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L 518 (636)
T 4eco_A 446 SKFPKE-LFST----GSPLSSINLMGN-MLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGI 518 (636)
T ss_dssp CSCCTH-HHHT----TCCCSEEECCSS-CCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEE
T ss_pred CcCCHH-HHcc----CCCCCEEECCCC-CCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEE
Confidence 433222 1122 799999999999 777 77742 2 289999999985 4566666 89999999
Q ss_pred EEccCCCccccCC--CCCCCccEEEEcC------CCCcccchhhhcCCCCCCCEEeeecCCCCCcccccccccccCCCCC
Q 044195 939 QIRGCRRVVFSSP--IDFSSLKSVFLGD------IANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSETRLLQDIRSL 1010 (1024)
Q Consensus 939 ~l~~~~~l~~~~~--~~l~~L~~L~l~~------c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l~~L 1010 (1024)
++++|. +..+|. ..+++|+.|++++ |.....+|. .+.++++|+.|++++| .++.+ |..+. ++|
T Consensus 519 ~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N-~l~~i----p~~~~--~~L 589 (636)
T 4eco_A 519 DLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE-GITLCPSLTQLQIGSN-DIRKV----NEKIT--PNI 589 (636)
T ss_dssp ECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT-TGGGCSSCCEEECCSS-CCCBC----CSCCC--TTC
T ss_pred ECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccChH-HHhcCCCCCEEECCCC-cCCcc----CHhHh--CcC
Confidence 999998 444543 4688999999964 333445553 5678999999999999 55888 55544 899
Q ss_pred CEEeeeCCCC
Q 044195 1011 NRLHISRCPQ 1020 (1024)
Q Consensus 1011 ~~L~l~~c~~ 1020 (1024)
+.|++++|+-
T Consensus 590 ~~L~Ls~N~l 599 (636)
T 4eco_A 590 SVLDIKDNPN 599 (636)
T ss_dssp CEEECCSCTT
T ss_pred CEEECcCCCC
Confidence 9999999974
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.7e-27 Score=283.16 Aligned_cols=440 Identities=16% Similarity=0.179 Sum_probs=279.3
Q ss_pred cccceeEEEEEccCCCCCcccccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCcc-cc
Q 044195 536 FSQSLRHFSYIRGECDGGTRFDFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNE-IG 614 (1024)
Q Consensus 536 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~-l~ 614 (1024)
++..++++.+..+.... .....+.++++|++|.+.++. +....+..|..+++|++|+|++| .+..+|.. ++
T Consensus 24 ~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 95 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSR------INTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFG 95 (549)
T ss_dssp CCTTCCEEECCSSCCCE-ECSSTTSSCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHT
T ss_pred CCCCccEEECcCCccCc-cChhhhhcCCcccEEECCCCC------cCccChhhccccccCCEEECCCC-ccCccCHHHhc
Confidence 44677888877764321 223456788888888888765 44444456788888888888888 67776644 88
Q ss_pred CCCCCcEeeccCCCccc--cCcccccCCCCcEEecCCCccccccc-cccCCCCcccEEeccCCccccccCccCCCCCCCC
Q 044195 615 NLKHLRFLNLSRTNIQI--LPQSINSLYNLHTVLLEDCRRLKKLC-KDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLT 691 (1024)
Q Consensus 615 ~l~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~ 691 (1024)
++++|++|++++|.++. .|..++++++|++|++++|..+..+| ..+.++++|++|++++|......|..++.+++|+
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 88888888888888874 46778888888888888886567776 4688888888888888874445677777777777
Q ss_pred ccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhH
Q 044195 692 TLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQ 771 (1024)
Q Consensus 692 ~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~ 771 (1024)
+|....+.. .......+..+++|+ .+.+.......... ........+++|+.|++.++.... ...
T Consensus 176 ~L~l~~n~~-~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~------------~~~ 240 (549)
T 2z81_A 176 HLTLHLSES-AFLLEIFADILSSVR-YLELRDTNLARFQF-SPLPVDEVSSPMKKLAFRGSVLTD------------ESF 240 (549)
T ss_dssp EEEEECSBS-TTHHHHHHHSTTTBS-EEEEESCBCTTCCC-CCCSSCCCCCCCCEEEEESCEEEH------------HHH
T ss_pred eEecccCcc-cccchhhHhhccccc-EEEccCCccccccc-cccchhhhhhcccceeccccccch------------hHH
Confidence 774332221 110001122344555 55554332111000 000112234555666655543210 001
Q ss_pred HHHhhcc------------------------------CCCCCccEEEEEecCCCCCCcccCC----CCCCCceEEEEecC
Q 044195 772 TRVLDML------------------------------KPHQKLEELTITGYGGTKFPIWLGD----FPFSKLVSLKFEYC 817 (1024)
Q Consensus 772 ~~~~~~l------------------------------~~~~~L~~L~l~~~~~~~~p~~~~~----~~l~~L~~L~L~~~ 817 (1024)
......+ ..+++|+.|.+.++.......+... ..+++|+.|++++|
T Consensus 241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred HHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence 1122222 3344455555544433221111000 01357888888887
Q ss_pred CCCCCCC-CC-CCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccccc-cccccccccCcccce
Q 044195 818 GMCTSLP-SV-GQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPR-GFAQEVNEVFPKLRK 894 (1024)
Q Consensus 818 ~~~~~l~-~l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~~~~~L~~ 894 (1024)
. +..+| .+ ..+++|++|++++|.....++... .....+++|+.|+++++ .+...... ..... +++|+.
T Consensus 321 ~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~----l~~L~~ 391 (549)
T 2z81_A 321 K-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS---ACKGAWPSLQTLVLSQN-HLRSMQKTGEILLT----LKNLTS 391 (549)
T ss_dssp C-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHH---TCTTSSTTCCEEECTTS-CCCCHHHHHHHGGG----CTTCCE
T ss_pred c-cccCCHHHHhcCccccEEEccCCccccccccch---hhhhccccCcEEEccCC-cccccccchhhhhc----CCCCCE
Confidence 6 44555 33 468999999999886443322110 01234899999999985 44443211 11122 899999
Q ss_pred eeeccCcCCcccCCC---CCCCccEEEEecccC--ccccCCCCCCcCEEEEccCCCccccCCCCCCCccEEEEcCCCCcc
Q 044195 895 LSLLRCSKLQGTLPE---RLLLLEKLVIQSCKQ--LLVTIQCLPALSELQIRGCRRVVFSSPIDFSSLKSVFLGDIANQV 969 (1024)
Q Consensus 895 L~l~~c~~L~~~lp~---~l~~L~~L~l~~c~~--l~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~L~~L~l~~c~~l~ 969 (1024)
|++++| .++ .+|. .+++|+.|++++|.. ++..+ .++|++|++++|. ++..+ ..+++|++|++++| .++
T Consensus 392 L~Ls~N-~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~-l~~~~-~~l~~L~~L~Ls~N-~l~ 464 (549)
T 2z81_A 392 LDISRN-TFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNN-LDSFS-LFLPRLQELYISRN-KLK 464 (549)
T ss_dssp EECTTC-CCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSC-CSCCC-CCCTTCCEEECCSS-CCS
T ss_pred EECCCC-CCc-cCChhhcccccccEEECCCCCcccccchh--cCCceEEECCCCC-hhhhc-ccCChhcEEECCCC-ccC
Confidence 999999 788 6774 568899999999862 22222 3689999999997 44433 57899999999986 566
Q ss_pred cchhhhcCCCCCCCEEeeecCCCCCcccccccccccCCCCCCEEeeeCCCC
Q 044195 970 VLAALFEQGLPQLESLKIDSVRAPTYLWQSETRLLQDIRSLNRLHISRCPQ 1020 (1024)
Q Consensus 970 ~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l~~L~~L~l~~c~~ 1020 (1024)
.+|. ...+++|+.|++++| .++.++ |..+..+++|+.|++++||-
T Consensus 465 ~ip~--~~~l~~L~~L~Ls~N-~l~~~~---~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 465 TLPD--ASLFPVLLVMKISRN-QLKSVP---DGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp SCCC--GGGCTTCCEEECCSS-CCCCCC---TTGGGGCTTCCEEECCSSCB
T ss_pred cCCC--cccCccCCEEecCCC-ccCCcC---HHHHhcCcccCEEEecCCCc
Confidence 7775 346899999999999 666663 45689999999999999873
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=3.5e-27 Score=293.24 Aligned_cols=154 Identities=21% Similarity=0.270 Sum_probs=118.5
Q ss_pred CCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccC-CccccCCCCCcEeeccCCCcccc-Cccccc
Q 044195 561 GVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDL-PNEIGNLKHLRFLNLSRTNIQIL-PQSINS 638 (1024)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~~~i~~l-p~~i~~ 638 (1024)
-.++++.|.+.++. +....+..|.++++|++|+|++|..+..+ |..++++++|++|+|++|.+..+ |..+.+
T Consensus 22 lp~~l~~LdLs~N~------i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 22 VLNTTERLLLSFNY------IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp SCTTCCEEEEESCC------CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred CCCCcCEEECCCCc------CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence 44789999998875 54555677899999999999999666677 68899999999999999999976 888999
Q ss_pred CCCCcEEecCCCccccccccc--cCCCCcccEEeccCCccccccC--ccCCCCCCCCccCceeeCCCCCcccccccCc--
Q 044195 639 LYNLHTVLLEDCRRLKKLCKD--MGNLTKLHHLRNSNVHSLEEMP--KGFGKLTCLTTLCRFVVGKDSGSALRELKSL-- 712 (1024)
Q Consensus 639 L~~L~~L~l~~~~~l~~lp~~--i~~L~~L~~L~l~~~~~l~~~p--~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L-- 712 (1024)
+++|++|++++|.....+|.. ++++++|++|++++|. +..++ ..++++++|+.|.... +.........+..+
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~-N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSS-NQIFLVCEHELEPLQG 173 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEES-SCCCCCCSGGGHHHHH
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCC-CcCCeeCHHHcccccC
Confidence 999999999999444445655 8999999999999998 65553 4689999999995443 33333333444444
Q ss_pred ccCCCceEecc
Q 044195 713 TNLQGTLEISS 723 (1024)
Q Consensus 713 ~~L~~~L~i~~ 723 (1024)
++|+ .+.+..
T Consensus 174 ~~L~-~L~L~~ 183 (844)
T 3j0a_A 174 KTLS-FFSLAA 183 (844)
T ss_dssp CSSC-CCEECC
T ss_pred Cccc-eEECCC
Confidence 4455 555543
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=284.33 Aligned_cols=415 Identities=19% Similarity=0.156 Sum_probs=293.7
Q ss_pred CCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCccccC-cccccCC
Q 044195 563 QQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQILP-QSINSLY 640 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp-~~i~~L~ 640 (1024)
++++.|.+.++. +.......|.++++|++|+|++| .+..++ ..++++++|++|+|++|.++.+| ..+..++
T Consensus 28 ~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 28 FSTKNLDLSFNP------LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SSCCEEECCSCC------CCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccccEEEccCCc------cCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 578999998875 44444557899999999999999 687775 67899999999999999999876 6799999
Q ss_pred CCcEEecCCCcccccccc-ccCCCCcccEEeccCCccccc--cCccCCCCCCCCccCceeeCCCCCcccccccCcccCC-
Q 044195 641 NLHTVLLEDCRRLKKLCK-DMGNLTKLHHLRNSNVHSLEE--MPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQ- 716 (1024)
Q Consensus 641 ~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~- 716 (1024)
+|++|++++| .+..+|. .++++++|++|++++|. +.. +|..++++++|++|+...+. ........+..+.+|.
T Consensus 101 ~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 177 (570)
T 2z63_A 101 SLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPL 177 (570)
T ss_dssp TCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTT
T ss_pred cccccccccc-ccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccch
Confidence 9999999998 7777765 59999999999999998 654 68889999999999544332 2222233444555441
Q ss_pred --CceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCC-------------------------cccccccc-----
Q 044195 717 --GTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSC-------------------------ISNIRNED----- 764 (1024)
Q Consensus 717 --~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------------------------~~~l~~~~----- 764 (1024)
..+.+....... ..+..+... +|+.|+++++.... ...+....
T Consensus 178 ~~~~L~l~~n~l~~----~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 252 (570)
T 2z63_A 178 LNLSLDLSLNPMNF----IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252 (570)
T ss_dssp CCCEEECTTCCCCE----ECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTG
T ss_pred hhhhcccCCCCcee----cCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhc
Confidence 144443321111 111222222 56666666542110 00000000
Q ss_pred -----------ccch-hhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCCCCCCCCCC
Q 044195 765 -----------AVDL-ETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLPSVGQLPVL 832 (1024)
Q Consensus 765 -----------~~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 832 (1024)
.... .........+..+++|+.|+++++....+|.++.. + +|+.|++++|... .+|. ..+++|
T Consensus 253 ~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~--~-~L~~L~l~~n~~~-~l~~-~~l~~L 327 (570)
T 2z63_A 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN--F-GWQHLELVNCKFG-QFPT-LKLKSL 327 (570)
T ss_dssp GGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSC--C-CCSEEEEESCBCS-SCCB-CBCSSC
T ss_pred cccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhcc--C-CccEEeeccCccc-ccCc-cccccc
Confidence 0000 00111234456678999999999999999998875 5 9999999999755 5554 678999
Q ss_pred ceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccc--cccccccccccCcccceeeeccCcCCcccCC--
Q 044195 833 KHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWI--PRGFAQEVNEVFPKLRKLSLLRCSKLQGTLP-- 908 (1024)
Q Consensus 833 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp-- 908 (1024)
+.|++++|......+. ..+++|+.|+++++. +.... +..+. . +++|++|++++| .++ .+|
T Consensus 328 ~~L~l~~n~~~~~~~~--------~~~~~L~~L~l~~n~-l~~~~~~~~~~~-~----~~~L~~L~l~~n-~l~-~~~~~ 391 (570)
T 2z63_A 328 KRLTFTSNKGGNAFSE--------VDLPSLEFLDLSRNG-LSFKGCCSQSDF-G----TTSLKYLDLSFN-GVI-TMSSN 391 (570)
T ss_dssp CEEEEESCBSCCBCCC--------CBCTTCCEEECCSSC-CBEEEEEEHHHH-T----CSCCCEEECCSC-SEE-EEEEE
T ss_pred CEEeCcCCcccccccc--------ccCCCCCEEeCcCCc-cCcccccccccc-c----cCccCEEECCCC-ccc-ccccc
Confidence 9999999864433321 348999999999853 33322 11112 2 899999999999 666 344
Q ss_pred -CCCCCccEEEEecccCc---c-ccCCCCCCcCEEEEccCCCccccC--CCCCCCccEEEEcCCCCc-ccchhhhcCCCC
Q 044195 909 -ERLLLLEKLVIQSCKQL---L-VTIQCLPALSELQIRGCRRVVFSS--PIDFSSLKSVFLGDIANQ-VVLAALFEQGLP 980 (1024)
Q Consensus 909 -~~l~~L~~L~l~~c~~l---~-~~l~~l~~L~~L~l~~~~~l~~~~--~~~l~~L~~L~l~~c~~l-~~l~~~~l~~l~ 980 (1024)
..+++|+.|++++|... + ..+..+++|++|++++|......+ ...+++|++|++++|... ..+| ..+.+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p-~~~~~l~ 470 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELR 470 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch-hhhhccc
Confidence 46899999999998632 2 357889999999999998443333 256889999999998644 2355 4678899
Q ss_pred CCCEEeeecCCCCCcccccccccccCCCCCCEEeeeCC
Q 044195 981 QLESLKIDSVRAPTYLWQSETRLLQDIRSLNRLHISRC 1018 (1024)
Q Consensus 981 ~L~~L~l~~c~~l~~l~~~~p~~l~~l~~L~~L~l~~c 1018 (1024)
+|+.|++++| .++.+. |..+..+++|+.|++++|
T Consensus 471 ~L~~L~l~~n-~l~~~~---~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 471 NLTFLDLSQC-QLEQLS---PTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp TCCEEECTTS-CCCEEC---TTTTTTCTTCCEEECCSS
T ss_pred CCCEEECCCC-ccccCC---hhhhhcccCCCEEeCCCC
Confidence 9999999999 455442 568899999999999998
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=4.3e-27 Score=285.99 Aligned_cols=345 Identities=15% Similarity=0.131 Sum_probs=260.4
Q ss_pred hhhhhCCCCceEEEEeCCCCCccc------------------CCcccc--CCCCCcEeeccCCCcc-ccCcccccCCCCc
Q 044195 585 VLQLLLDLPRLRVFSLCGYCNIID------------------LPNEIG--NLKHLRFLNLSRTNIQ-ILPQSINSLYNLH 643 (1024)
Q Consensus 585 ~~~~l~~l~~L~~L~L~~~~~l~~------------------lp~~l~--~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~ 643 (1024)
.+..|.++++|++|+|++| .+.. +|..++ ++++|++|+|++|.+. .+|..+++|++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 5567889999999999999 6777 999988 9999999999999865 7899999999999
Q ss_pred EEecCCCcccc--ccccccCCCC-------cccEEeccCCccccccCc--cCCCCCCCCccCceeeCCCCCcccccccCc
Q 044195 644 TVLLEDCRRLK--KLCKDMGNLT-------KLHHLRNSNVHSLEEMPK--GFGKLTCLTTLCRFVVGKDSGSALRELKSL 712 (1024)
Q Consensus 644 ~L~l~~~~~l~--~lp~~i~~L~-------~L~~L~l~~~~~l~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L 712 (1024)
+|++++|..+. .+|..+++++ +|++|++++|. +..+|. .++++++|+.|....+... .+..+..+
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~---~lp~~~~L 594 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR---HLEAFGTN 594 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC---BCCCCCTT
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc---cchhhcCC
Confidence 99999995354 5888777665 99999999998 779998 8999999999955443322 33366777
Q ss_pred ccCCCceEeccCCCCCCcccchhhhcCCCCC-CCcEEEEecCCCCccccccccccchhhHHHHhhccCCC--CCccEEEE
Q 044195 713 TNLQGTLEISSLENVKCVGDAIEAQLNRKVN-LEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPH--QKLEELTI 789 (1024)
Q Consensus 713 ~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l 789 (1024)
++|+ .|.+...... .++..+..+++ |+.|++++|....+ +..+... ++|+.|++
T Consensus 595 ~~L~-~L~Ls~N~l~-----~lp~~l~~l~~~L~~L~Ls~N~L~~l-----------------p~~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 595 VKLT-DLKLDYNQIE-----EIPEDFCAFTDQVEGLGFSHNKLKYI-----------------PNIFNAKSVYVMGSVDF 651 (876)
T ss_dssp SEES-EEECCSSCCS-----CCCTTSCEECTTCCEEECCSSCCCSC-----------------CSCCCTTCSSCEEEEEC
T ss_pred Ccce-EEECcCCccc-----cchHHHhhccccCCEEECcCCCCCcC-----------------chhhhccccCCCCEEEC
Confidence 7776 6666543321 45566788888 99999999986322 2334443 45999999
Q ss_pred EecCCCCC-C---cccCCCCCCCceEEEEecCCCCCCCC-C-CCCCCCCceeeecCCCCceEeccccccCC--CCCCCCC
Q 044195 790 TGYGGTKF-P---IWLGDFPFSKLVSLKFEYCGMCTSLP-S-VGQLPVLKHLEMRGMDRVKSVGLEFYGNS--CSAPFPS 861 (1024)
Q Consensus 790 ~~~~~~~~-p---~~~~~~~l~~L~~L~L~~~~~~~~l~-~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~--~~~~~~~ 861 (1024)
++|..... | ..+....+++|+.|++++|... .+| . +..+++|+.|+|++|. +..++....... ....+++
T Consensus 652 s~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~ 729 (876)
T 4ecn_A 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYL 729 (876)
T ss_dssp CSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGG
T ss_pred cCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCC
Confidence 99987543 2 2333324569999999999855 565 3 3478999999999874 446655443221 1123459
Q ss_pred cceeecccccccccccccccc-ccccccCcccceeeeccCcCCcccCC---CCCCCccEEEEeccc---------Ccccc
Q 044195 862 LETLCFVNMQEWEEWIPRGFA-QEVNEVFPKLRKLSLLRCSKLQGTLP---ERLLLLEKLVIQSCK---------QLLVT 928 (1024)
Q Consensus 862 L~~L~l~~~~~l~~~~~~~~~-~~~~~~~~~L~~L~l~~c~~L~~~lp---~~l~~L~~L~l~~c~---------~l~~~ 928 (1024)
|+.|+++++ ++..+. ..+. .. +++|+.|++++| .+++ +| ..+++|+.|++++|+ .+|..
T Consensus 730 L~~L~Ls~N-~L~~lp-~~l~~~~----l~~L~~L~Ls~N-~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 730 LTTIDLRFN-KLTSLS-DDFRATT----LPYLSNMDVSYN-CFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp CCEEECCSS-CCCCCC-GGGSTTT----CTTCCEEECCSS-CCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred ccEEECCCC-CCccch-HHhhhcc----CCCcCEEEeCCC-CCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 999999985 455332 2222 12 899999999999 7884 77 467999999998743 34667
Q ss_pred CCCCCCcCEEEEccCCCccccCCCCCCCccEEEEcCCCCc
Q 044195 929 IQCLPALSELQIRGCRRVVFSSPIDFSSLKSVFLGDIANQ 968 (1024)
Q Consensus 929 l~~l~~L~~L~l~~~~~l~~~~~~~l~~L~~L~l~~c~~l 968 (1024)
+..+++|+.|++++|. +..+|...+++|+.|+|++|+..
T Consensus 802 l~~L~~L~~L~Ls~N~-L~~Ip~~l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSND-IRKVDEKLTPQLYILDIADNPNI 840 (876)
T ss_dssp GGGCSSCCEEECCSSC-CCBCCSCCCSSSCEEECCSCTTC
T ss_pred HhcCCCCCEEECCCCC-CCccCHhhcCCCCEEECCCCCCC
Confidence 8889999999999998 58788777789999999998743
No 22
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=7.6e-26 Score=276.07 Aligned_cols=133 Identities=17% Similarity=0.142 Sum_probs=82.8
Q ss_pred cceeEEEEEccCCCCCcccccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCC-ccccCC
Q 044195 538 QSLRHFSYIRGECDGGTRFDFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLP-NEIGNL 616 (1024)
Q Consensus 538 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l 616 (1024)
..++++.+..+.... .....+.++++|++|.+.++. +.......|..+++|++|+|++| .+..+| ..++++
T Consensus 49 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~------l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l 120 (680)
T 1ziw_A 49 SQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNE------LSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQ 120 (680)
T ss_dssp TTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSC------CCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTC
T ss_pred CcCcEEECCCCccCc-cCHHHHhcccCcCEEECCCCc------cCccChhhhccCCCCCEEECCCC-ccCccChhHcccc
Confidence 456666666553322 223445667777777777654 22222234677777888888777 566665 567777
Q ss_pred CCCcEeeccCCCcccc-CcccccCCCCcEEecCCCcccccccc-cc--CCCCcccEEeccCCcccccc
Q 044195 617 KHLRFLNLSRTNIQIL-PQSINSLYNLHTVLLEDCRRLKKLCK-DM--GNLTKLHHLRNSNVHSLEEM 680 (1024)
Q Consensus 617 ~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~-~i--~~L~~L~~L~l~~~~~l~~~ 680 (1024)
++|++|++++|.++.. |..+.++++|++|++++| .+..++. .+ ..+++|++|++++|. +..+
T Consensus 121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~ 186 (680)
T 1ziw_A 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQ-IKEF 186 (680)
T ss_dssp TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTCC-CCCB
T ss_pred CCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCCCc-cccc
Confidence 7788888877777654 455677777777777777 4444433 22 345777777777776 4433
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=2.4e-25 Score=264.43 Aligned_cols=414 Identities=16% Similarity=0.150 Sum_probs=257.5
Q ss_pred CCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccC-CccccCCCCCcEeeccCCCccccCcccccCCC
Q 044195 563 QQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDL-PNEIGNLKHLRFLNLSRTNIQILPQSINSLYN 641 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~ 641 (1024)
++++.|.+.++. +....+..|..+++|++|+|++| .+..+ |..++++++|++|+|++|.++.+|.. .+++
T Consensus 52 ~~L~~L~Ls~N~------i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 122 (562)
T 3a79_B 52 PRTKALSLSQNS------ISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMAS 122 (562)
T ss_dssp TTCCEEECCSSC------CCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTT
T ss_pred CCcCEEECCCCC------ccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--cccc
Confidence 678888888775 44444567788889999999988 67766 57788889999999999988888876 7899
Q ss_pred CcEEecCCCcccccc--ccccCCCCcccEEeccCCccccccCccCCCCCCC--CccCceeeCCC-CCcccccccCcccCC
Q 044195 642 LHTVLLEDCRRLKKL--CKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCL--TTLCRFVVGKD-SGSALRELKSLTNLQ 716 (1024)
Q Consensus 642 L~~L~l~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L--~~L~~~~~~~~-~~~~~~~l~~L~~L~ 716 (1024)
|++|++++| .+..+ |..++++++|++|++++|. +.. ..+..+++| +.|....+... ....+..+..+.. +
T Consensus 123 L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~-~ 197 (562)
T 3a79_B 123 LRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT-T 197 (562)
T ss_dssp CSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE-E
T ss_pred CCEEECCCC-CccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCcccccccCc-c
Confidence 999999988 56554 4678889999999998887 543 245555666 66643332210 2222333333321 0
Q ss_pred CceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCC------------ccccccccccc----hhhHHHHhhccCC
Q 044195 717 GTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSC------------ISNIRNEDAVD----LETQTRVLDMLKP 780 (1024)
Q Consensus 717 ~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------------~~~l~~~~~~~----~~~~~~~~~~l~~ 780 (1024)
.+.+ .+.............+..+++|+.|+++++...+ ...+..+.... ..........+ .
T Consensus 198 -~l~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~ 274 (562)
T 3a79_B 198 -VLHL-VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-W 274 (562)
T ss_dssp -EEEE-EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-T
T ss_pred -eEEE-EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-h
Confidence 1111 1111110111111123334445555554442100 00000000000 00011112222 2
Q ss_pred CCCccEEEEEecCCC-CCCcccCCC---CCCCceEEEEecCCCCCCCC--CCC---CCCCCceeeecCCCCceEeccccc
Q 044195 781 HQKLEELTITGYGGT-KFPIWLGDF---PFSKLVSLKFEYCGMCTSLP--SVG---QLPVLKHLEMRGMDRVKSVGLEFY 851 (1024)
Q Consensus 781 ~~~L~~L~l~~~~~~-~~p~~~~~~---~l~~L~~L~L~~~~~~~~l~--~l~---~l~~L~~L~L~~~~~l~~~~~~~~ 851 (1024)
.++|++|++++|... .+|.++... .++.|+.+++..+.. .+| .+. ..++|+.|++++|.... . .+
T Consensus 275 ~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~-~--~~- 348 (562)
T 3a79_B 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIH-M--VC- 348 (562)
T ss_dssp TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCC-C--CC-
T ss_pred cccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccc-c--cC-
Confidence 347888888888765 677665321 234444444444432 232 111 12568888888875321 1 11
Q ss_pred cCCCCCCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCcccCC------CCCCCccEEEEecccC-
Q 044195 852 GNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLP------ERLLLLEKLVIQSCKQ- 924 (1024)
Q Consensus 852 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp------~~l~~L~~L~l~~c~~- 924 (1024)
...+++|++|+++++ .+.+..+..+.. +++|+.|++++| .++ .++ ..+++|+.|++++|..
T Consensus 349 ----~~~l~~L~~L~l~~n-~l~~~~~~~~~~-----l~~L~~L~L~~N-~l~-~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 349 ----PPSPSSFTFLNFTQN-VFTDSVFQGCST-----LKRLQTLILQRN-GLK-NFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp ----CSSCCCCCEEECCSS-CCCTTTTTTCCS-----CSSCCEEECCSS-CCC-BTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred ----ccCCCCceEEECCCC-ccccchhhhhcc-----cCCCCEEECCCC-CcC-CcccchhhhcCCCCCCEEECCCCcCC
Confidence 134889999999984 444433333322 899999999998 777 333 4689999999999863
Q ss_pred --ccc-cCCCCCCcCEEEEccCCCccccCCCCC-CCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCCCCcccccc
Q 044195 925 --LLV-TIQCLPALSELQIRGCRRVVFSSPIDF-SSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSE 1000 (1024)
Q Consensus 925 --l~~-~l~~l~~L~~L~l~~~~~l~~~~~~~l-~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~ 1000 (1024)
++. .+..+++|++|++++|. +.......+ ++|+.|++++| .++.+|.... ++++|+.|++++| .++.+
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~-~l~~L~~L~L~~N-~l~~l---- 488 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNM-LTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVT-HLQALQELNVASN-QLKSV---- 488 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSC-CCGGGGSSCCTTCSEEECCSS-CCCCCCTTTT-SSCCCSEEECCSS-CCCCC----
T ss_pred CccChhhhcCcccCCEEECCCCC-CCcchhhhhcCcCCEEECCCC-cCcccChhhc-CCCCCCEEECCCC-CCCCC----
Confidence 443 36778999999999998 433333344 69999999986 6778887555 8999999999998 77788
Q ss_pred ccc-ccCCCCCCEEeeeCCC
Q 044195 1001 TRL-LQDIRSLNRLHISRCP 1019 (1024)
Q Consensus 1001 p~~-l~~l~~L~~L~l~~c~ 1019 (1024)
|.. +..+++|+.|+++++|
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 489 PDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CTTSTTTCTTCCCEECCSCC
T ss_pred CHHHHhcCCCCCEEEecCCC
Confidence 544 8899999999999987
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=1.7e-25 Score=265.92 Aligned_cols=402 Identities=20% Similarity=0.165 Sum_probs=272.1
Q ss_pred CCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCccccCcc-cccCC
Q 044195 563 QQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQILPQS-INSLY 640 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~~-i~~L~ 640 (1024)
++|++|.+.++. +....+..|..+++|++|+|++| .+..++ ..++++++|++|+|++|.++.+|+. +++++
T Consensus 26 ~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNK------ITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSC------CCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCccEEECcCCc------cCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 689999998875 44444566789999999999999 676665 6789999999999999999988765 89999
Q ss_pred CCcEEecCCCcccc--ccccccCCCCcccEEeccCCccccccC-ccCCCCCCCCccCceeeCCCCCcccccccCcccCCC
Q 044195 641 NLHTVLLEDCRRLK--KLCKDMGNLTKLHHLRNSNVHSLEEMP-KGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQG 717 (1024)
Q Consensus 641 ~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 717 (1024)
+|++|++++| .+. ..|..++++++|++|++++|..+..+| ..++++++|+.|....+ ...+..+..+..+++|+
T Consensus 99 ~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~- 175 (549)
T 2z81_A 99 SLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIH- 175 (549)
T ss_dssp TCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEE-
T ss_pred CCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-cccccChhhhhccccCc-
Confidence 9999999998 555 346778999999999999987667776 46888888888854433 33333445566666666
Q ss_pred ceEeccCCCCCCcccchhh-hcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCC
Q 044195 718 TLEISSLENVKCVGDAIEA-QLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTK 796 (1024)
Q Consensus 718 ~L~i~~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 796 (1024)
.+.+...... ..+. .+..+++|+.|++++|....... . .......+++|+.|++.++....
T Consensus 176 ~L~l~~n~~~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~----------~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 176 HLTLHLSESA-----FLLEIFADILSSVRYLELRDTNLARFQF---S----------PLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp EEEEECSBST-----THHHHHHHSTTTBSEEEEESCBCTTCCC---C----------CCSSCCCCCCCCEEEEESCEEEH
T ss_pred eEecccCccc-----ccchhhHhhcccccEEEccCCccccccc---c----------ccchhhhhhcccceeccccccch
Confidence 6665443221 1222 23457889999999887532100 0 01122346778888887764321
Q ss_pred -----CCcccCCCCCCCceEEEEecCCCCCC--C-----CCCCCC-----------------------------CCCcee
Q 044195 797 -----FPIWLGDFPFSKLVSLKFEYCGMCTS--L-----PSVGQL-----------------------------PVLKHL 835 (1024)
Q Consensus 797 -----~p~~~~~~~l~~L~~L~L~~~~~~~~--l-----~~l~~l-----------------------------~~L~~L 835 (1024)
++..+. .+++|+.|++++|..... + ..+..+ ++|+.|
T Consensus 238 ~~~~~l~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L 315 (549)
T 2z81_A 238 ESFNELLKLLR--YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315 (549)
T ss_dssp HHHHHHHGGGG--GCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEE
T ss_pred hHHHHHHHHhh--hhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEE
Confidence 111111 245566666666543211 1 112233 345555
Q ss_pred eecCCCCceEeccccccCCCCCCCCCcceeeccccccccccccc--cccccccccCcccceeeeccCcCCccc-----CC
Q 044195 836 EMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPR--GFAQEVNEVFPKLRKLSLLRCSKLQGT-----LP 908 (1024)
Q Consensus 836 ~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~~~~~~~L~~L~l~~c~~L~~~-----lp 908 (1024)
++++|. +..++..+.. .+++|+.|+++++. +.+..+. ...+. +++|+.|++++| .+++. ..
T Consensus 316 ~l~~n~-l~~ip~~~~~-----~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~----l~~L~~L~Ls~N-~l~~~~~~~~~~ 383 (549)
T 2z81_A 316 TVENSK-VFLVPCSFSQ-----HLKSLEFLDLSENL-MVEEYLKNSACKGA----WPSLQTLVLSQN-HLRSMQKTGEIL 383 (549)
T ss_dssp EEESSC-CCCCCHHHHH-----HCTTCCEEECCSSC-CCHHHHHHHTCTTS----STTCCEEECTTS-CCCCHHHHHHHG
T ss_pred EeccCc-cccCCHHHHh-----cCccccEEEccCCc-cccccccchhhhhc----cccCcEEEccCC-cccccccchhhh
Confidence 555543 3334333222 27889999998854 3332211 00122 899999999998 66621 13
Q ss_pred CCCCCccEEEEeccc--CccccCCCCCCcCEEEEccCCCccccCCCCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEe
Q 044195 909 ERLLLLEKLVIQSCK--QLLVTIQCLPALSELQIRGCRRVVFSSPIDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLK 986 (1024)
Q Consensus 909 ~~l~~L~~L~l~~c~--~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~ 986 (1024)
..+++|+.|++++|. .+|..+..+++|++|++++|. +..++....++|+.|++++|. ++.++ .++++|+.|+
T Consensus 384 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~-l~~~~----~~l~~L~~L~ 457 (549)
T 2z81_A 384 LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNN-LDSFS----LFLPRLQELY 457 (549)
T ss_dssp GGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSC-CSCCC----CCCTTCCEEE
T ss_pred hcCCCCCEEECCCCCCccCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCC-hhhhc----ccCChhcEEE
Confidence 578999999999985 456677788999999999998 665665556799999999874 44432 5789999999
Q ss_pred eecCCCCCcccccccccccCCCCCCEEeeeCC
Q 044195 987 IDSVRAPTYLWQSETRLLQDIRSLNRLHISRC 1018 (1024)
Q Consensus 987 l~~c~~l~~l~~~~p~~l~~l~~L~~L~l~~c 1018 (1024)
+++| +++.+ |. ...+++|+.|++++|
T Consensus 458 Ls~N-~l~~i----p~-~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 458 ISRN-KLKTL----PD-ASLFPVLLVMKISRN 483 (549)
T ss_dssp CCSS-CCSSC----CC-GGGCTTCCEEECCSS
T ss_pred CCCC-ccCcC----CC-cccCccCCEEecCCC
Confidence 9999 77888 54 467999999999998
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=6.1e-25 Score=254.37 Aligned_cols=340 Identities=18% Similarity=0.200 Sum_probs=229.0
Q ss_pred CCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCC
Q 044195 561 GVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLY 640 (1024)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~ 640 (1024)
.++++++|.+.++. + ..++.+..+++|++|+|++| .+..+|. ++++++|++|++++|.+..+|. +.+++
T Consensus 44 ~l~~l~~L~l~~~~------i--~~l~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~ 112 (466)
T 1o6v_A 44 DLDQVTTLQADRLG------I--KSIDGVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITP-LANLT 112 (466)
T ss_dssp HHHTCCEEECCSSC------C--CCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred HhccccEEecCCCC------C--ccCcchhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCccccChh-hcCCC
Confidence 45677777776654 1 11334667788888888888 6777766 7888888888888888887766 78888
Q ss_pred CCcEEecCCCccccccccccCCCCcccEEeccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceE
Q 044195 641 NLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLE 720 (1024)
Q Consensus 641 ~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~ 720 (1024)
+|++|++++| .+..+|. +.++++|++|++++|. +..++ .++.+++|+.|... . .+.
T Consensus 113 ~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~-~---------------~~~---- 168 (466)
T 1o6v_A 113 NLTGLTLFNN-QITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFG-N---------------QVT---- 168 (466)
T ss_dssp TCCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEE-E---------------SCC----
T ss_pred CCCEEECCCC-CCCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecC-C---------------ccc----
Confidence 8888888887 6666655 7788888888888876 66654 36666666666221 0 000
Q ss_pred eccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcc
Q 044195 721 ISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIW 800 (1024)
Q Consensus 721 i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~ 800 (1024)
. . ..+..+++|+.|++++|.... ...+..+++|+.|++++|.....+.
T Consensus 169 --------~----~-~~~~~l~~L~~L~l~~n~l~~------------------~~~l~~l~~L~~L~l~~n~l~~~~~- 216 (466)
T 1o6v_A 169 --------D----L-KPLANLTTLERLDISSNKVSD------------------ISVLAKLTNLESLIATNNQISDITP- 216 (466)
T ss_dssp --------C----C-GGGTTCTTCCEEECCSSCCCC------------------CGGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred --------C----c-hhhccCCCCCEEECcCCcCCC------------------ChhhccCCCCCEEEecCCccccccc-
Confidence 0 0 125677889999998887521 1336677899999999988777655
Q ss_pred cCCCCCCCceEEEEecCCCCCCCCCCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeecccccccccccccc
Q 044195 801 LGDFPFSKLVSLKFEYCGMCTSLPSVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRG 880 (1024)
Q Consensus 801 ~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 880 (1024)
+. .+++|+.|++++|. +..++.+..+++|+.|++++|... .++. ...+++|+.|+++++ .+....+
T Consensus 217 ~~--~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~-~~~~-------~~~l~~L~~L~l~~n-~l~~~~~-- 282 (466)
T 1o6v_A 217 LG--ILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQIS-NLAP-------LSGLTKLTELKLGAN-QISNISP-- 282 (466)
T ss_dssp GG--GCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCC-CCGG-------GTTCTTCSEEECCSS-CCCCCGG--
T ss_pred cc--ccCCCCEEECCCCC-cccchhhhcCCCCCEEECCCCccc-cchh-------hhcCCCCCEEECCCC-ccCcccc--
Confidence 32 37899999999886 445667788899999999887532 2211 233788888888874 3333322
Q ss_pred ccccccccCcccceeeeccCcCCcccCC-CCCCCccEEEEecccCcc-ccCCCCCCcCEEEEccCCCccccCCCCCCCcc
Q 044195 881 FAQEVNEVFPKLRKLSLLRCSKLQGTLP-ERLLLLEKLVIQSCKQLL-VTIQCLPALSELQIRGCRRVVFSSPIDFSSLK 958 (1024)
Q Consensus 881 ~~~~~~~~~~~L~~L~l~~c~~L~~~lp-~~l~~L~~L~l~~c~~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~L~ 958 (1024)
+. . +++|+.|++++| .+++..| ..+++|+.|++++|.... ..+..+++|+.|++++|..........+++|+
T Consensus 283 ~~-~----l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~ 356 (466)
T 1o6v_A 283 LA-G----LTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNIN 356 (466)
T ss_dssp GT-T----CTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCC
T ss_pred cc-C----CCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccCCCCC
Confidence 12 2 788888888888 6663322 467778888887774221 22566777888888777633333445677777
Q ss_pred EEEEcCCCCcccchhhhcCCCCCCCEEeeecC
Q 044195 959 SVFLGDIANQVVLAALFEQGLPQLESLKIDSV 990 (1024)
Q Consensus 959 ~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c 990 (1024)
.|++++|+. ..++. +..+++|+.|++++|
T Consensus 357 ~L~l~~n~l-~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 357 WLSAGHNQI-SDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp EEECCSSCC-CBCGG--GTTCTTCCEEECCCE
T ss_pred EEeCCCCcc-Cccch--hhcCCCCCEEeccCC
Confidence 888777653 33332 567777777777777
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=3.4e-25 Score=256.51 Aligned_cols=340 Identities=19% Similarity=0.220 Sum_probs=249.7
Q ss_pred ccceeEEEEEccCCCCCcccccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCC
Q 044195 537 SQSLRHFSYIRGECDGGTRFDFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNL 616 (1024)
Q Consensus 537 ~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l 616 (1024)
...++.+.+..+... .++.+..+++|++|.+.++. +... ..+..+++|++|++++| .+..++. ++++
T Consensus 45 l~~l~~L~l~~~~i~---~l~~~~~l~~L~~L~Ls~n~------l~~~--~~~~~l~~L~~L~l~~n-~l~~~~~-~~~l 111 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQ------LTDI--TPLKNLTKLVDILMNNN-QIADITP-LANL 111 (466)
T ss_dssp HHTCCEEECCSSCCC---CCTTGGGCTTCCEEECCSSC------CCCC--GGGTTCTTCCEEECCSS-CCCCCGG-GTTC
T ss_pred hccccEEecCCCCCc---cCcchhhhcCCCEEECCCCc------cCCc--hhhhccccCCEEECCCC-ccccChh-hcCC
Confidence 356788887766433 34557788999999998775 2222 22889999999999999 6888876 8999
Q ss_pred CCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcccEEeccCCccccccCccCCCCCCCCccCce
Q 044195 617 KHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTLCRF 696 (1024)
Q Consensus 617 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~ 696 (1024)
++|++|++++|.++.+|. +.++++|++|++++| .+..+| .++++++|++|+++++ +..++. ++++++|+.|+..
T Consensus 112 ~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~~--~~~~~~-~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 112 TNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQLSFGNQ--VTDLKP-LANLTTLERLDIS 185 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCG-GGTTCTTCSEEEEEES--CCCCGG-GTTCTTCCEEECC
T ss_pred CCCCEEECCCCCCCCChH-HcCCCCCCEEECCCC-ccCCCh-hhccCCcccEeecCCc--ccCchh-hccCCCCCEEECc
Confidence 999999999999998876 889999999999998 677776 4889999999999643 344433 6667777666321
Q ss_pred eeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhh
Q 044195 697 VVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLD 776 (1024)
Q Consensus 697 ~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 776 (1024)
.+. +. . + ..+..+++|++|++++|..... .
T Consensus 186 ~n~---------------l~---------~-------~-~~l~~l~~L~~L~l~~n~l~~~------------------~ 215 (466)
T 1o6v_A 186 SNK---------------VS---------D-------I-SVLAKLTNLESLIATNNQISDI------------------T 215 (466)
T ss_dssp SSC---------------CC---------C-------C-GGGGGCTTCSEEECCSSCCCCC------------------G
T ss_pred CCc---------------CC---------C-------C-hhhccCCCCCEEEecCCccccc------------------c
Confidence 110 00 0 0 1245678899999998875221 1
Q ss_pred ccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCCCCCCCCCCceeeecCCCCceEeccccccCCCC
Q 044195 777 MLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLPSVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCS 856 (1024)
Q Consensus 777 ~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 856 (1024)
.+..+++|+.|++++|....++. +. .+++|+.|++++|.... ++.+..+++|+.|++++|.. ..++. .
T Consensus 216 ~~~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l-~~~~~-------~ 283 (466)
T 1o6v_A 216 PLGILTNLDELSLNGNQLKDIGT-LA--SLTNLTDLDLANNQISN-LAPLSGLTKLTELKLGANQI-SNISP-------L 283 (466)
T ss_dssp GGGGCTTCCEEECCSSCCCCCGG-GG--GCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCC-CCCGG-------G
T ss_pred cccccCCCCEEECCCCCcccchh-hh--cCCCCCEEECCCCcccc-chhhhcCCCCCEEECCCCcc-Ccccc-------c
Confidence 24557889999999998877753 33 37899999999997544 44588899999999998753 33322 2
Q ss_pred CCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCcccCC-CCCCCccEEEEecccCc-cccCCCCCC
Q 044195 857 APFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLP-ERLLLLEKLVIQSCKQL-LVTIQCLPA 934 (1024)
Q Consensus 857 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp-~~l~~L~~L~l~~c~~l-~~~l~~l~~ 934 (1024)
..+++|+.|+++++ .+....+ ... +++|+.|++++| .+++..| ..+++|+.|++++|... ...+..+++
T Consensus 284 ~~l~~L~~L~L~~n-~l~~~~~---~~~----l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~ 354 (466)
T 1o6v_A 284 AGLTALTNLELNEN-QLEDISP---ISN----LKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTN 354 (466)
T ss_dssp TTCTTCSEEECCSS-CCSCCGG---GGG----CTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTT
T ss_pred cCCCccCeEEcCCC-cccCchh---hcC----CCCCCEEECcCC-cCCCchhhccCccCCEeECCCCccCCchhhccCCC
Confidence 34899999999885 4444333 122 899999999999 6775444 57899999999998522 246788999
Q ss_pred cCEEEEccCCCccccCCCCCCCccEEEEcCCC
Q 044195 935 LSELQIRGCRRVVFSSPIDFSSLKSVFLGDIA 966 (1024)
Q Consensus 935 L~~L~l~~~~~l~~~~~~~l~~L~~L~l~~c~ 966 (1024)
|+.|++++|......|...+++|+.|++++|+
T Consensus 355 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 355 INWLSAGHNQISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp CCEEECCSSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred CCEEeCCCCccCccchhhcCCCCCEEeccCCc
Confidence 99999999986666667888999999999864
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=4.2e-25 Score=260.29 Aligned_cols=382 Identities=16% Similarity=0.131 Sum_probs=271.7
Q ss_pred CceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCcccc-CcccccCCCCcEEecCCCccccccccccCCCCcccEEe
Q 044195 593 PRLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQIL-PQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLR 670 (1024)
Q Consensus 593 ~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 670 (1024)
++|++|+|++| .+..+| ..+.++++|++|+|++|.++.+ |..+.++++|++|++++| .+..+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEE
T ss_pred ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEe
Confidence 89999999999 687776 6899999999999999999977 778999999999999999 77889876 899999999
Q ss_pred ccCCccccc--cCccCCCCCCCCccCceeeCCCCCcccccccCcccC--CCceEeccCCC--CCCcccc-----------
Q 044195 671 NSNVHSLEE--MPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNL--QGTLEISSLEN--VKCVGDA----------- 733 (1024)
Q Consensus 671 l~~~~~l~~--~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L--~~~L~i~~l~~--~~~~~~~----------- 733 (1024)
+++|. +.. +|..++++++|++|....+. ..... +..+++| + .+.+..... .......
T Consensus 97 L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~-~L~l~~n~l~~~~~~~~~l~~l~~~~l~l 170 (520)
T 2z7x_B 97 LSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEKSS---VLPIAHLNIS-KVLLVLGETYGEKEDPEGLQDFNTESLHI 170 (520)
T ss_dssp CCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCGGG---GGGGTTSCEE-EEEEEECTTTTSSCCTTTTTTCCEEEEEE
T ss_pred ccCCc-cccccchhhhccCCcceEEEecCcc-cchhh---ccccccceee-EEEeecccccccccccccccccccceEEE
Confidence 99998 654 67889999999999655543 22333 3344444 4 555544322 1100000
Q ss_pred -----------hhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCC-----C
Q 044195 734 -----------IEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTK-----F 797 (1024)
Q Consensus 734 -----------~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~ 797 (1024)
....+..+++|+.|++++|... .........++.+..+++|+.|+++++.... +
T Consensus 171 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~----------~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~ 240 (520)
T 2z7x_B 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLED----------NKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240 (520)
T ss_dssp ECCSSSCCCCCCCCCCTTCSEEEECCEEECCST----------TTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHH
T ss_pred EeccCcchhhhhhhhhhcccceeeccccccccc----------cccceeecchhhhccccchhhccccccccCHHHHHHH
Confidence 1112334566777777766410 0001123344578889999999998876432 1
Q ss_pred CcccCCCCCCCceEEEEecCCCCCCCC-CC-----CCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccc
Q 044195 798 PIWLGDFPFSKLVSLKFEYCGMCTSLP-SV-----GQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQ 871 (1024)
Q Consensus 798 p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l-----~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 871 (1024)
+.+. ..++|+.|++++|...+.+| .+ +.+++|+.++++++.. .++....+. ...-++|+.|+++++.
T Consensus 241 ~~~~---~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~--~~~~~~L~~L~l~~n~ 313 (520)
T 2z7x_B 241 LQLV---WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYE--IFSNMNIKNFTVSGTR 313 (520)
T ss_dssp HHHH---HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHH--HHHTCCCSEEEEESSC
T ss_pred HHHh---hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhc--ccccCceeEEEcCCCc
Confidence 1111 14689999999998765666 45 8899999999988754 333111110 0001569999999864
Q ss_pred cccccccccccccccccCcccceeeeccCcCCcccCC---CCCCCccEEEEecccC-----ccccCCCCCCcCEEEEccC
Q 044195 872 EWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLP---ERLLLLEKLVIQSCKQ-----LLVTIQCLPALSELQIRGC 943 (1024)
Q Consensus 872 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp---~~l~~L~~L~l~~c~~-----l~~~l~~l~~L~~L~l~~~ 943 (1024)
+..... ... +++|++|++++| .+++.+| ..+++|+.|++++|.. ++..+..+++|++|++++|
T Consensus 314 -l~~~~~---~~~----l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 314 -MVHMLC---PSK----ISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp -CCCCCC---CSS----CCCCCEEECCSS-CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred -cccccc---hhh----CCcccEEEeECC-ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence 332221 122 899999999999 7776666 4678999999999863 2356889999999999999
Q ss_pred CCccccCC---CCCCCccEEEEcCCCCcccchhhhcCCC-CCCCEEeeecCCCCCcccccccccccCCCCCCEEeeeCCC
Q 044195 944 RRVVFSSP---IDFSSLKSVFLGDIANQVVLAALFEQGL-PQLESLKIDSVRAPTYLWQSETRLLQDIRSLNRLHISRCP 1019 (1024)
Q Consensus 944 ~~l~~~~~---~~l~~L~~L~l~~c~~l~~l~~~~l~~l-~~L~~L~l~~c~~l~~l~~~~p~~l~~l~~L~~L~l~~c~ 1019 (1024)
.....++. ..+++|++|++++|.....++. .+ ++|+.|++++| .++.+ |..+..+++|++|++++|.
T Consensus 385 ~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~~L~~L~Ls~N-~l~~i----p~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR----CLPPRIKVLDLHSN-KIKSI----PKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG----SCCTTCCEEECCSS-CCCCC----CGGGGGCTTCCEEECCSSC
T ss_pred cCCcccccchhccCccCCEEECcCCCCCcchhh----hhcccCCEEECCCC-ccccc----chhhhcCCCCCEEECCCCc
Confidence 84432543 4578999999999764444443 23 79999999999 77788 7777899999999999983
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=1.8e-23 Score=253.56 Aligned_cols=450 Identities=18% Similarity=0.130 Sum_probs=249.3
Q ss_pred cccceeEEEEEccCCCCCcccccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCC-cccc
Q 044195 536 FSQSLRHFSYIRGECDGGTRFDFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLP-NEIG 614 (1024)
Q Consensus 536 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp-~~l~ 614 (1024)
+|..++++.+..+.... .....|.++++|++|.+.++. +....+..|.++++|++|+|++| .+..+| ..|.
T Consensus 50 lp~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~------i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~ 121 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFS 121 (635)
T ss_dssp SCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGT
T ss_pred CCcCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCc------CCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhc
Confidence 55666777666654321 112345667777777776654 33333344566777777777777 566666 3456
Q ss_pred CCCCCcEeeccCCCccccCc-ccccCCCCcEEecCCCcccc--ccccccCCCCcccEEeccCCccccccC-ccCCCCCCC
Q 044195 615 NLKHLRFLNLSRTNIQILPQ-SINSLYNLHTVLLEDCRRLK--KLCKDMGNLTKLHHLRNSNVHSLEEMP-KGFGKLTCL 690 (1024)
Q Consensus 615 ~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~l~~L 690 (1024)
++++|++|+|++|.++.+|. .+++|++|++|++++| .+. .+|..++.+++|++|++++|. +..++ ..+..+.++
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQM 199 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTC
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhh
Confidence 77777777777777776654 3677777777777776 333 245566677777777777776 44433 334444333
Q ss_pred CccCceee-CCCCCc--ccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEE-------------------
Q 044195 691 TTLCRFVV-GKDSGS--ALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALV------------------- 748 (1024)
Q Consensus 691 ~~L~~~~~-~~~~~~--~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~------------------- 748 (1024)
+.+..... ...... .......+ .+. .+.+.. ...........+..+..++...
T Consensus 200 ~~~~~~~~ls~n~l~~i~~~~~~~~-~~~-~l~l~~---n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 274 (635)
T 4g8a_A 200 PLLNLSLDLSLNPMNFIQPGAFKEI-RLH-KLTLRN---NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 274 (635)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTC-EEE-EEEEES---CCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred hhhhhhhhcccCcccccCcccccch-hhh-hhhhhc---ccccccccchhhcCCcccccccccccccccccccccccccc
Confidence 32211100 000000 00000000 000 111100 0000011111122222222222
Q ss_pred -----------EEecCCCC-----------ccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCCCC
Q 044195 749 -----------LRWCNRSC-----------ISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDFPF 806 (1024)
Q Consensus 749 -----------l~~~~~~~-----------~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l 806 (1024)
+..+.... ...+..+...... ......+.....|+.|++.++....++.. .+
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l 348 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT--IERVKDFSYNFGWQHLELVNCKFGQFPTL----KL 348 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE--EEECGGGGSCCCCSEEEEESCEESSCCCC----BC
T ss_pred cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccc--cccccccccchhhhhhhcccccccCcCcc----cc
Confidence 22211100 0000000000000 00011233455677787777766555432 25
Q ss_pred CCceEEEEecCCCCCCCCCCCCCCCCceeeecCCCCceEe--cccccc-----------------CCCCCCCCCcceeec
Q 044195 807 SKLVSLKFEYCGMCTSLPSVGQLPVLKHLEMRGMDRVKSV--GLEFYG-----------------NSCSAPFPSLETLCF 867 (1024)
Q Consensus 807 ~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~--~~~~~~-----------------~~~~~~~~~L~~L~l 867 (1024)
+.|+.+.+.++... ..+....+++|+.|+++++...... +..+.. ......+++|+.+++
T Consensus 349 ~~L~~l~l~~n~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l 427 (635)
T 4g8a_A 349 KSLKRLTFTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDF 427 (635)
T ss_dssp TTCCEEEEESCCSC-CBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEEC
T ss_pred hhhhhcccccccCC-CCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhh
Confidence 67777777776533 3334556788888888765432111 100000 011233566777776
Q ss_pred cccccccccccccccccccccCcccceeeeccCcCCcccCC---CCCCCccEEEEecccC----ccccCCCCCCcCEEEE
Q 044195 868 VNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLP---ERLLLLEKLVIQSCKQ----LLVTIQCLPALSELQI 940 (1024)
Q Consensus 868 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp---~~l~~L~~L~l~~c~~----l~~~l~~l~~L~~L~l 940 (1024)
.++..........+. .+++++.++++.| .+.+..| ..+++|+.|++++|.. .|..+..+++|++|++
T Consensus 428 ~~~~~~~~~~~~~~~-----~l~~l~~l~ls~n-~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~L 501 (635)
T 4g8a_A 428 QHSNLKQMSEFSVFL-----SLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501 (635)
T ss_dssp TTSEEESTTSSCTTT-----TCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred hhccccccccccccc-----ccccccccccccc-ccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEEC
Confidence 654433332222222 2788999999888 6664444 4678999999998853 3467888999999999
Q ss_pred ccCCCccccCC---CCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCCCCcccccccccccCC-CCCCEEeee
Q 044195 941 RGCRRVVFSSP---IDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSETRLLQDI-RSLNRLHIS 1016 (1024)
Q Consensus 941 ~~~~~l~~~~~---~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l-~~L~~L~l~ 1016 (1024)
++|. +..+++ ..+++|++|++++| .++.++...+.++++|+.|++++| +++.++ |+.+..+ ++|+.|+++
T Consensus 502 s~N~-L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~---~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 502 SQCQ-LEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSK---KQELQHFPSSLAFLNLT 575 (635)
T ss_dssp TTSC-CCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCC---SSCTTCCCTTCCEEECT
T ss_pred CCCc-cCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCC---HHHHHhhhCcCCEEEee
Confidence 9997 555443 46789999999985 677788778899999999999999 566553 5678887 689999999
Q ss_pred CCC
Q 044195 1017 RCP 1019 (1024)
Q Consensus 1017 ~c~ 1019 (1024)
++|
T Consensus 576 ~Np 578 (635)
T 4g8a_A 576 QND 578 (635)
T ss_dssp TCC
T ss_pred CCC
Confidence 876
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1.4e-24 Score=248.46 Aligned_cols=137 Identities=18% Similarity=0.114 Sum_probs=76.6
Q ss_pred cceeEEEEEccCCCCCcccccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCce-------------EEEEeCCCC
Q 044195 538 QSLRHFSYIRGECDGGTRFDFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRL-------------RVFSLCGYC 604 (1024)
Q Consensus 538 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L-------------~~L~L~~~~ 604 (1024)
..++.+.+..+.. ..-+..+.++++|+.|.+.++. +....+..++.+++| ++|++++|
T Consensus 11 ~~L~~L~l~~n~l--~~iP~~i~~L~~L~~L~l~~n~------~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~- 81 (454)
T 1jl5_A 11 TFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSE------WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL- 81 (454)
T ss_dssp -------------------------CCHHHHHHHHHH------HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-
T ss_pred ccchhhhcccCch--hhCChhHhcccchhhhhccCCc------ccccCCcccccchhcchhhhhhhhccCCCEEEecCC-
Confidence 3445555554433 2223456677777777776543 444455555665554 77888877
Q ss_pred CcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcccEEeccCCccccccCccC
Q 044195 605 NIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKGF 684 (1024)
Q Consensus 605 ~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i 684 (1024)
.+..+|.. .++|++|++++|.++.+|.. +.+|++|++++| .+..+|.. .++|++|++++|. +..+| .+
T Consensus 82 ~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~~ 149 (454)
T 1jl5_A 82 GLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNNQ-LEKLP-EL 149 (454)
T ss_dssp CCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCCSC---CTTCCEEECCSSC-CSSCC-CC
T ss_pred ccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCC-ccCcccCC---CCCCCEEECcCCC-CCCCc-cc
Confidence 57777652 36788888888887777753 367788888877 55555431 1678888888776 66676 57
Q ss_pred CCCCCCCccCc
Q 044195 685 GKLTCLTTLCR 695 (1024)
Q Consensus 685 ~~l~~L~~L~~ 695 (1024)
+++++|+.|..
T Consensus 150 ~~l~~L~~L~l 160 (454)
T 1jl5_A 150 QNSSFLKIIDV 160 (454)
T ss_dssp TTCTTCCEEEC
T ss_pred CCCCCCCEEEC
Confidence 77777777743
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.7e-24 Score=248.05 Aligned_cols=313 Identities=18% Similarity=0.145 Sum_probs=175.0
Q ss_pred cccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccc
Q 044195 558 FIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSIN 637 (1024)
Q Consensus 558 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~ 637 (1024)
.+..+++|++|.+.++. +.. .+.+..+++|++|+|++| .+..+| ++.+++|++|++++|.++.+| ++
T Consensus 37 ~~~~l~~L~~L~Ls~n~------l~~--~~~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~ 103 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSS------ITD--MTGIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTNLD--VT 103 (457)
T ss_dssp EHHHHTTCCEEECCSSC------CCC--CTTGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCCC--CT
T ss_pred ChhHcCCCCEEEccCCC------ccc--ChhhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCceee--cC
Confidence 44566777777777654 222 135677778888888877 577775 777788888888888777765 77
Q ss_pred cCCCCcEEecCCCccccccccccCCCCcccEEeccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCC
Q 044195 638 SLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQG 717 (1024)
Q Consensus 638 ~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 717 (1024)
++++|++|++++| .+..+| ++.+++|++|++++|. +..++ ++.+++|+.|....+...... .+..+++|+
T Consensus 104 ~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~- 173 (457)
T 3bz5_A 104 PLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL---DVTPQTQLT- 173 (457)
T ss_dssp TCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC---CCTTCTTCC-
T ss_pred CCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc---ccccCCcCC-
Confidence 7888888888877 566664 7777888888888777 65553 566666666633222111100 122333333
Q ss_pred ceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCC
Q 044195 718 TLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKF 797 (1024)
Q Consensus 718 ~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 797 (1024)
.+.+....... ++ +..+++|+.|++++|....+ .+..+++|+.|++++|....+
T Consensus 174 ~L~ls~n~l~~-----l~--l~~l~~L~~L~l~~N~l~~~-------------------~l~~l~~L~~L~Ls~N~l~~i 227 (457)
T 3bz5_A 174 TLDCSFNKITE-----LD--VSQNKLLNRLNCDTNNITKL-------------------DLNQNIQLTFLDCSSNKLTEI 227 (457)
T ss_dssp EEECCSSCCCC-----CC--CTTCTTCCEEECCSSCCSCC-------------------CCTTCTTCSEEECCSSCCSCC
T ss_pred EEECCCCccce-----ec--cccCCCCCEEECcCCcCCee-------------------ccccCCCCCEEECcCCccccc
Confidence 33332211100 11 33444455555544443100 133444555555555554444
Q ss_pred CcccCCCCCCCceEEEEecCCCCCCCCCCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccc
Q 044195 798 PIWLGDFPFSKLVSLKFEYCGMCTSLPSVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWI 877 (1024)
Q Consensus 798 p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 877 (1024)
| +. .+++|+.|++++|.... +| .+.+++|+.|++++ .+|+.|+++++..+..+.
T Consensus 228 p--~~--~l~~L~~L~l~~N~l~~-~~-~~~l~~L~~L~l~~--------------------n~L~~L~l~~n~~~~~~~ 281 (457)
T 3bz5_A 228 D--VT--PLTQLTYFDCSVNPLTE-LD-VSTLSKLTTLHCIQ--------------------TDLLEIDLTHNTQLIYFQ 281 (457)
T ss_dssp C--CT--TCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECTT--------------------CCCSCCCCTTCTTCCEEE
T ss_pred C--cc--ccCCCCEEEeeCCcCCC-cC-HHHCCCCCEEeccC--------------------CCCCEEECCCCccCCccc
Confidence 4 21 24455555555544222 22 33344444444332 234455555544333322
Q ss_pred cccccccccccCcccceeeeccCcCCcccCCCCCCCccEEEEecccCccccCCCCCCcCEEEEccCCCccccCCCCCCCc
Q 044195 878 PRGFAQEVNEVFPKLRKLSLLRCSKLQGTLPERLLLLEKLVIQSCKQLLVTIQCLPALSELQIRGCRRVVFSSPIDFSSL 957 (1024)
Q Consensus 878 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~L 957 (1024)
. +. +++|+.|++++|+.+. .+|...++|+.|++++| ++|++|++++|. ++.++...+++|
T Consensus 282 ~----~~----l~~L~~L~Ls~n~~l~-~l~~~~~~L~~L~l~~~----------~~L~~L~L~~N~-l~~l~l~~l~~L 341 (457)
T 3bz5_A 282 A----EG----CRKIKELDVTHNTQLY-LLDCQAAGITELDLSQN----------PKLVYLYLNNTE-LTELDVSHNTKL 341 (457)
T ss_dssp C----TT----CTTCCCCCCTTCTTCC-EEECTTCCCSCCCCTTC----------TTCCEEECTTCC-CSCCCCTTCTTC
T ss_pred c----cc----cccCCEEECCCCcccc-eeccCCCcceEechhhc----------ccCCEEECCCCc-ccccccccCCcC
Confidence 1 11 6788888888886554 66666666666655444 567777777776 444566677778
Q ss_pred cEEEEcCC
Q 044195 958 KSVFLGDI 965 (1024)
Q Consensus 958 ~~L~l~~c 965 (1024)
+.|+++++
T Consensus 342 ~~L~l~~N 349 (457)
T 3bz5_A 342 KSLSCVNA 349 (457)
T ss_dssp SEEECCSS
T ss_pred cEEECCCC
Confidence 88877764
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=6.7e-24 Score=252.02 Aligned_cols=411 Identities=16% Similarity=0.108 Sum_probs=264.1
Q ss_pred CceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCcccc-CcccccCCC
Q 044195 564 QLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQIL-PQSINSLYN 641 (1024)
Q Consensus 564 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~ 641 (1024)
..+++.+.++. +. ..+..+. ++|++|+|++| .+..+| ..++++++|++|+|++|.++.+ |..+.++++
T Consensus 32 ~~~~l~ls~~~------L~-~ip~~~~--~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 32 LESMVDYSNRN------LT-HVPKDLP--PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp -CCEEECTTSC------CC-SCCTTSC--TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred CCcEEEcCCCC------Cc-cCCCCCC--CCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence 34667766553 21 1222232 78999999999 688876 6899999999999999999987 677999999
Q ss_pred CcEEecCCCccccccccccCCCCcccEEeccCCccccccC--ccCCCCCCCCccCceeeCCCCCcccccccCcccCCCce
Q 044195 642 LHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMP--KGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTL 719 (1024)
Q Consensus 642 L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p--~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L 719 (1024)
|++|++++| .+..+|.. .+++|++|++++|. +..+| ..++++++|+.|+...+ ......+..+..+ +|+ .+
T Consensus 102 L~~L~Ls~N-~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~L-~L~-~L 174 (562)
T 3a79_B 102 LEYLDVSHN-RLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAA-KFRQLDLLPVAHL-HLS-CI 174 (562)
T ss_dssp CCEEECTTS-CCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECS-BCCTTTTGGGTTS-CEE-EE
T ss_pred CCEEECCCC-cCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCC-ccccCchhhhhhc-eee-EE
Confidence 999999998 77889876 89999999999998 77654 67999999999955443 2222333344444 224 55
Q ss_pred EeccCCCCCCcccchhhhcCCCCCCCcE--EEEecCCCC---------ccccccccccc----hhhHHHHhhccCCCCCc
Q 044195 720 EISSLENVKCVGDAIEAQLNRKVNLEAL--VLRWCNRSC---------ISNIRNEDAVD----LETQTRVLDMLKPHQKL 784 (1024)
Q Consensus 720 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L--~l~~~~~~~---------~~~l~~~~~~~----~~~~~~~~~~l~~~~~L 784 (1024)
.+....... ....+..+..+. .+.+ .++.|.... +..++.++... ..........+..++.|
T Consensus 175 ~L~~n~l~~--~~~~~~~l~~l~-~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L 251 (562)
T 3a79_B 175 LLDLVSYHI--KGGETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251 (562)
T ss_dssp EEEESSCCC--CSSSCCEEEECC-EEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSC
T ss_pred Eeecccccc--cccCcccccccC-cceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcc
Confidence 554432200 001112222221 1222 333332211 11122222221 11223344456667777
Q ss_pred cEEEEEecCCC-----CCCcccCCCCCCCceEEEEecCCCCCCCC-CC-----CCCCCCceeeecCCCCceEeccccccC
Q 044195 785 EELTITGYGGT-----KFPIWLGDFPFSKLVSLKFEYCGMCTSLP-SV-----GQLPVLKHLEMRGMDRVKSVGLEFYGN 853 (1024)
Q Consensus 785 ~~L~l~~~~~~-----~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l-----~~l~~L~~L~L~~~~~l~~~~~~~~~~ 853 (1024)
+.|.+.++... .++.+.. .++|++|++++|...+.+| .+ ..++.|+.+++..+.. .++......
T Consensus 252 ~~L~L~~~~l~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~ 326 (562)
T 3a79_B 252 LNVTLQHIETTWKCSVKLFQFFW---PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYS 326 (562)
T ss_dssp EEEEEEEEEECHHHHHHHHHHHT---TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHH
T ss_pred eEEEecCCcCcHHHHHHHHHhhh---cccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhh
Confidence 77777765432 1222222 3589999999998765666 33 4445555555544321 121111000
Q ss_pred CCCCCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCcccCC---CCCCCccEEEEecccC-----c
Q 044195 854 SCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLP---ERLLLLEKLVIQSCKQ-----L 925 (1024)
Q Consensus 854 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp---~~l~~L~~L~l~~c~~-----l 925 (1024)
....++|++|+++++.- ..... ... +++|++|++++| .+++.+| ..+++|+.|++++|.. +
T Consensus 327 --~~~~~~L~~L~l~~n~~-~~~~~---~~~----l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 395 (562)
T 3a79_B 327 --VFAEMNIKMLSISDTPF-IHMVC---PPS----PSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395 (562)
T ss_dssp --HHHTCCCSEEEEESSCC-CCCCC---CSS----CCCCCEEECCSS-CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHH
T ss_pred --hhccCcceEEEccCCCc-ccccC---ccC----CCCceEEECCCC-ccccchhhhhcccCCCCEEECCCCCcCCcccc
Confidence 00125699999998643 22221 122 899999999999 7776666 4679999999999852 2
Q ss_pred cccCCCCCCcCEEEEccCCCccccCC---CCCCCccEEEEcCCCCcccchhhhcCCC-CCCCEEeeecCCCCCccccccc
Q 044195 926 LVTIQCLPALSELQIRGCRRVVFSSP---IDFSSLKSVFLGDIANQVVLAALFEQGL-PQLESLKIDSVRAPTYLWQSET 1001 (1024)
Q Consensus 926 ~~~l~~l~~L~~L~l~~~~~l~~~~~---~~l~~L~~L~l~~c~~l~~l~~~~l~~l-~~L~~L~l~~c~~l~~l~~~~p 1001 (1024)
+..+..+++|++|++++|.....++. ..+++|+.|++++|..-..++ ..+ ++|+.|++++| .++.+ |
T Consensus 396 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~l~~~L~~L~L~~N-~l~~i----p 466 (562)
T 3a79_B 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF----RCLPPKVKVLDLHNN-RIMSI----P 466 (562)
T ss_dssp HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG----SSCCTTCSEEECCSS-CCCCC----C
T ss_pred hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh----hhhcCcCCEEECCCC-cCccc----C
Confidence 34588999999999999984332443 456899999999976433333 344 69999999999 78888 6
Q ss_pred ccccCCCCCCEEeeeCCC
Q 044195 1002 RLLQDIRSLNRLHISRCP 1019 (1024)
Q Consensus 1002 ~~l~~l~~L~~L~l~~c~ 1019 (1024)
..+..+++|+.|++++|.
T Consensus 467 ~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 467 KDVTHLQALQELNVASNQ 484 (562)
T ss_dssp TTTTSSCCCSEEECCSSC
T ss_pred hhhcCCCCCCEEECCCCC
Confidence 677799999999999873
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=2.8e-24 Score=246.22 Aligned_cols=317 Identities=19% Similarity=0.175 Sum_probs=217.1
Q ss_pred hhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCccc
Q 044195 588 LLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLH 667 (1024)
Q Consensus 588 ~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~ 667 (1024)
.+..+++|++|++++| .+..+| .++.+++|++|++++|.++.+| ++.+++|++|++++| .+..+| ++++++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLT 109 (457)
T ss_dssp EHHHHTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCC
T ss_pred ChhHcCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCC
Confidence 4567899999999999 788888 6999999999999999999986 899999999999999 677775 89999999
Q ss_pred EEeccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcE
Q 044195 668 HLRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEAL 747 (1024)
Q Consensus 668 ~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L 747 (1024)
+|++++|. +..+| ++.+++|+.|....+... . + .+..+++|+ .+.+......... .+..+++|+.|
T Consensus 110 ~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~-~--l-~l~~l~~L~-~L~l~~n~~~~~~------~~~~l~~L~~L 175 (457)
T 3bz5_A 110 YLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLT-E--I-DVSHNTQLT-ELDCHLNKKITKL------DVTPQTQLTTL 175 (457)
T ss_dssp EEECCSSC-CSCCC--CTTCTTCCEEECTTSCCS-C--C-CCTTCTTCC-EEECTTCSCCCCC------CCTTCTTCCEE
T ss_pred EEECCCCc-CCeec--CCCCCcCCEEECCCCccc-e--e-ccccCCcCC-EEECCCCCccccc------ccccCCcCCEE
Confidence 99999998 77775 788888888854332211 1 1 244555555 5555443222111 24566777777
Q ss_pred EEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCCCCC
Q 044195 748 VLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLPSVG 827 (1024)
Q Consensus 748 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~ 827 (1024)
++++|.... ++ +..+++|+.|++++|....++ +. .+++|+.|++++|.... +| ++
T Consensus 176 ~ls~n~l~~------------------l~-l~~l~~L~~L~l~~N~l~~~~--l~--~l~~L~~L~Ls~N~l~~-ip-~~ 230 (457)
T 3bz5_A 176 DCSFNKITE------------------LD-VSQNKLLNRLNCDTNNITKLD--LN--QNIQLTFLDCSSNKLTE-ID-VT 230 (457)
T ss_dssp ECCSSCCCC------------------CC-CTTCTTCCEEECCSSCCSCCC--CT--TCTTCSEEECCSSCCSC-CC-CT
T ss_pred ECCCCccce------------------ec-cccCCCCCEEECcCCcCCeec--cc--cCCCCCEEECcCCcccc-cC-cc
Confidence 777766421 11 455667777777777766653 22 36777777777776443 55 66
Q ss_pred CCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCcccC
Q 044195 828 QLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTL 907 (1024)
Q Consensus 828 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~l 907 (1024)
.+++|+.|++++|. ++.++ ...+++|+.|+++ .++|+.|++++|+.+. .+
T Consensus 231 ~l~~L~~L~l~~N~-l~~~~--------~~~l~~L~~L~l~--------------------~n~L~~L~l~~n~~~~-~~ 280 (457)
T 3bz5_A 231 PLTQLTYFDCSVNP-LTELD--------VSTLSKLTTLHCI--------------------QTDLLEIDLTHNTQLI-YF 280 (457)
T ss_dssp TCTTCSEEECCSSC-CSCCC--------CTTCTTCCEEECT--------------------TCCCSCCCCTTCTTCC-EE
T ss_pred ccCCCCEEEeeCCc-CCCcC--------HHHCCCCCEEecc--------------------CCCCCEEECCCCccCC-cc
Confidence 77777777777663 22221 1235666666543 2467778888885443 56
Q ss_pred C-CCCCCccEEEEecccCccccCCCCCCcCEEEEccCCCccccCCCCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEe
Q 044195 908 P-ERLLLLEKLVIQSCKQLLVTIQCLPALSELQIRGCRRVVFSSPIDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLK 986 (1024)
Q Consensus 908 p-~~l~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~ 986 (1024)
| ..+++|+.|++++|..+.......++|+.|++++| ++|+.|++++| .++.++ +.++++|+.|+
T Consensus 281 ~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~-----------~~L~~L~L~~N-~l~~l~---l~~l~~L~~L~ 345 (457)
T 3bz5_A 281 QAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN-----------PKLVYLYLNNT-ELTELD---VSHNTKLKSLS 345 (457)
T ss_dssp ECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC-----------TTCCEEECTTC-CCSCCC---CTTCTTCSEEE
T ss_pred cccccccCCEEECCCCcccceeccCCCcceEechhhc-----------ccCCEEECCCC-cccccc---cccCCcCcEEE
Confidence 6 45688888888888654332234455555555544 68899999975 455553 77899999999
Q ss_pred eecCCCCCcc
Q 044195 987 IDSVRAPTYL 996 (1024)
Q Consensus 987 l~~c~~l~~l 996 (1024)
+++| .++.+
T Consensus 346 l~~N-~l~~l 354 (457)
T 3bz5_A 346 CVNA-HIQDF 354 (457)
T ss_dssp CCSS-CCCBC
T ss_pred CCCC-CCCCc
Confidence 9988 44443
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=3.6e-23 Score=230.06 Aligned_cols=303 Identities=16% Similarity=0.215 Sum_probs=154.9
Q ss_pred CCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcccEEe
Q 044195 591 DLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLR 670 (1024)
Q Consensus 591 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 670 (1024)
.+++|++|++++| .+..+|. +..+++|++|++++|.++.+|. +..+++|++|++++| .+..+| .+.++++|++|+
T Consensus 42 ~l~~L~~L~l~~~-~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 42 ELESITKLVVAGE-KVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHTTCSEEECCSS-CCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred hcccccEEEEeCC-ccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEE
Confidence 4455666666666 4555553 5666666666666666666655 666666666666666 455554 366666666666
Q ss_pred ccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEE
Q 044195 671 NSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLR 750 (1024)
Q Consensus 671 l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 750 (1024)
+++|. +..++. +..+++|+.|....+ ..... ...+..+++|+.|+++
T Consensus 117 l~~n~-i~~~~~-~~~l~~L~~L~l~~n--------------------------~~~~~-----~~~~~~l~~L~~L~l~ 163 (347)
T 4fmz_A 117 LNEDN-ISDISP-LANLTKMYSLNLGAN--------------------------HNLSD-----LSPLSNMTGLNYLTVT 163 (347)
T ss_dssp CTTSC-CCCCGG-GTTCTTCCEEECTTC--------------------------TTCCC-----CGGGTTCTTCCEEECC
T ss_pred CcCCc-ccCchh-hccCCceeEEECCCC--------------------------CCccc-----ccchhhCCCCcEEEec
Confidence 66665 444443 444444444311100 00000 0012333444444444
Q ss_pred ecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCCCCCCCC
Q 044195 751 WCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLPSVGQLP 830 (1024)
Q Consensus 751 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~ 830 (1024)
.|....+ ..+..+++|+.|++++|....++. +. .+++|+.|++++|.... ++.+..++
T Consensus 164 ~~~~~~~------------------~~~~~l~~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~l~~n~l~~-~~~~~~~~ 221 (347)
T 4fmz_A 164 ESKVKDV------------------TPIANLTDLYSLSLNYNQIEDISP-LA--SLTSLHYFTAYVNQITD-ITPVANMT 221 (347)
T ss_dssp SSCCCCC------------------GGGGGCTTCSEEECTTSCCCCCGG-GG--GCTTCCEEECCSSCCCC-CGGGGGCT
T ss_pred CCCcCCc------------------hhhccCCCCCEEEccCCccccccc-cc--CCCccceeecccCCCCC-CchhhcCC
Confidence 4432100 012233444444444444433333 11 14444444444443221 22233444
Q ss_pred CCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCcccCCCC
Q 044195 831 VLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLPER 910 (1024)
Q Consensus 831 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~ 910 (1024)
+|++|++++|. +..... +. . +++|+.|++++| .+++ +
T Consensus 222 ~L~~L~l~~n~-------------------------------l~~~~~--~~-~----l~~L~~L~l~~n-~l~~-~--- 258 (347)
T 4fmz_A 222 RLNSLKIGNNK-------------------------------ITDLSP--LA-N----LSQLTWLEIGTN-QISD-I--- 258 (347)
T ss_dssp TCCEEECCSSC-------------------------------CCCCGG--GT-T----CTTCCEEECCSS-CCCC-C---
T ss_pred cCCEEEccCCc-------------------------------cCCCcc--hh-c----CCCCCEEECCCC-ccCC-C---
Confidence 44444444431 111110 01 1 556666666665 3331 1
Q ss_pred CCCccEEEEecccCccccCCCCCCcCEEEEccCCCccccCCCCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecC
Q 044195 911 LLLLEKLVIQSCKQLLVTIQCLPALSELQIRGCRRVVFSSPIDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSV 990 (1024)
Q Consensus 911 l~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c 990 (1024)
..+..+++|++|++++|..........+++|+.|++++|. ++..+...+.++++|+.|++++|
T Consensus 259 ----------------~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 259 ----------------NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp ----------------GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSS
T ss_pred ----------------hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCC
Confidence 2345566666666666652222223556778888887764 44444456678889999999988
Q ss_pred CCCCcccccccccccCCCCCCEEeeeCCC
Q 044195 991 RAPTYLWQSETRLLQDIRSLNRLHISRCP 1019 (1024)
Q Consensus 991 ~~l~~l~~~~p~~l~~l~~L~~L~l~~c~ 1019 (1024)
+ ++.+ +. +..+++|+.|++++|+
T Consensus 322 ~-l~~~----~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 322 H-ITDI----RP-LASLSKMDSADFANQV 344 (347)
T ss_dssp S-CCCC----GG-GGGCTTCSEESSSCC-
T ss_pred c-cccc----cC-hhhhhccceeehhhhc
Confidence 4 5555 32 7788899999998886
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=4.8e-23 Score=238.42 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=81.0
Q ss_pred CCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccC-CccccCCCCCcEeeccCCCcccc-CcccccCC
Q 044195 563 QQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDL-PNEIGNLKHLRFLNLSRTNIQIL-PQSINSLY 640 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~ 640 (1024)
++|++|.+.++. +....+..|.++++|++|+|++|.....+ |..+.++++|++|+|++|.++.+ |..+.+++
T Consensus 30 ~~l~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLNS------IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp TTCCEEECCSSC------CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CccCEEEecCCc------cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 567777777654 33444556677777777777777322244 35577777777777777777755 66677777
Q ss_pred CCcEEecCCCccccccccc--cCCCCcccEEeccCCcccccc-Ccc-CCCCCCCCcc
Q 044195 641 NLHTVLLEDCRRLKKLCKD--MGNLTKLHHLRNSNVHSLEEM-PKG-FGKLTCLTTL 693 (1024)
Q Consensus 641 ~L~~L~l~~~~~l~~lp~~--i~~L~~L~~L~l~~~~~l~~~-p~~-i~~l~~L~~L 693 (1024)
+|++|++++|......|.. ++++++|++|++++|. +..+ |.. ++++++|+.|
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L 159 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVL 159 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEE
Confidence 7777777777333334443 6777777777777777 5444 433 5666666666
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=1.6e-22 Score=231.36 Aligned_cols=372 Identities=17% Similarity=0.083 Sum_probs=230.4
Q ss_pred CCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCCC-------------cEeeccCCC
Q 044195 562 VQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHL-------------RFLNLSRTN 628 (1024)
Q Consensus 562 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L-------------~~L~L~~~~ 628 (1024)
.++|+.|.+.++. + ...+..+.++++|++|++++|.....+|..++++.+| ++|++++|.
T Consensus 10 ~~~L~~L~l~~n~------l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 10 NTFLQEPLRHSSN------L-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred cccchhhhcccCc------h-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 4667777776654 3 4566677888888888888874334677777777764 888888888
Q ss_pred ccccCcccccCCCCcEEecCCCccccccccccCCCCcccEEeccCCccccccCccCCCCCCCCccCceeeCCCCCccccc
Q 044195 629 IQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRE 708 (1024)
Q Consensus 629 i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~ 708 (1024)
++.+|.. .++|++|++++| .+..+|.. +++|++|++++|. +..+|... ++|++|....+... .+..
T Consensus 83 l~~lp~~---~~~L~~L~l~~n-~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~~---~~L~~L~L~~n~l~---~lp~ 148 (454)
T 1jl5_A 83 LSSLPEL---PPHLESLVASCN-SLTELPEL---PQSLKSLLVDNNN-LKALSDLP---PLLEYLGVSNNQLE---KLPE 148 (454)
T ss_dssp CSCCCSC---CTTCSEEECCSS-CCSSCCCC---CTTCCEEECCSSC-CSCCCSCC---TTCCEEECCSSCCS---SCCC
T ss_pred cccCCCC---cCCCCEEEccCC-cCCccccc---cCCCcEEECCCCc-cCcccCCC---CCCCEEECcCCCCC---CCcc
Confidence 8777762 367888888887 56667653 3778888888876 66655321 46666644333221 2334
Q ss_pred ccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEE
Q 044195 709 LKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELT 788 (1024)
Q Consensus 709 l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 788 (1024)
+..+++|+ .+.+...... .++. ...+|++|++++|.... ++.+..+++|+.|+
T Consensus 149 ~~~l~~L~-~L~l~~N~l~-----~lp~---~~~~L~~L~L~~n~l~~------------------l~~~~~l~~L~~L~ 201 (454)
T 1jl5_A 149 LQNSSFLK-IIDVDNNSLK-----KLPD---LPPSLEFIAAGNNQLEE------------------LPELQNLPFLTAIY 201 (454)
T ss_dssp CTTCTTCC-EEECCSSCCS-----CCCC---CCTTCCEEECCSSCCSS------------------CCCCTTCTTCCEEE
T ss_pred cCCCCCCC-EEECCCCcCc-----ccCC---CcccccEEECcCCcCCc------------------CccccCCCCCCEEE
Confidence 66666666 6665543211 1111 12478888888776521 23467889999999
Q ss_pred EEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCCCCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeecc
Q 044195 789 ITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLPSVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFV 868 (1024)
Q Consensus 789 l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 868 (1024)
+++|....+|.. .++|+.|++++|... .+|.++.+++|++|++++|. +..++. .+++|+.|+++
T Consensus 202 l~~N~l~~l~~~-----~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~-l~~l~~---------~~~~L~~L~l~ 265 (454)
T 1jl5_A 202 ADNNSLKKLPDL-----PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNL-LKTLPD---------LPPSLEALNVR 265 (454)
T ss_dssp CCSSCCSSCCCC-----CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSC-CSSCCS---------CCTTCCEEECC
T ss_pred CCCCcCCcCCCC-----cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCc-CCcccc---------cccccCEEECC
Confidence 999988877753 358999999999644 77788899999999999874 332321 25889999998
Q ss_pred ccccccccccccccccccccCcccceeeeccCcCCcccCCCCCCCccEEEEecccCccccCCCC-CCcCEEEEccCCCcc
Q 044195 869 NMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLPERLLLLEKLVIQSCKQLLVTIQCL-PALSELQIRGCRRVV 947 (1024)
Q Consensus 869 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~L~~L~l~~c~~l~~~l~~l-~~L~~L~l~~~~~l~ 947 (1024)
++ .+..+.. . +++|+.|++++| .++ .+|...++|+.|++++|... .+..+ ++|++|++++|. +.
T Consensus 266 ~N-~l~~l~~-----~----~~~L~~L~ls~N-~l~-~l~~~~~~L~~L~l~~N~l~--~i~~~~~~L~~L~Ls~N~-l~ 330 (454)
T 1jl5_A 266 DN-YLTDLPE-----L----PQSLTFLDVSEN-IFS-GLSELPPNLYYLNASSNEIR--SLCDLPPSLEELNVSNNK-LI 330 (454)
T ss_dssp SS-CCSCCCC-----C----CTTCCEEECCSS-CCS-EESCCCTTCCEEECCSSCCS--EECCCCTTCCEEECCSSC-CS
T ss_pred CC-cccccCc-----c----cCcCCEEECcCC-ccC-cccCcCCcCCEEECcCCcCC--cccCCcCcCCEEECCCCc-cc
Confidence 74 3444221 1 688999999998 677 45555578999999988532 23344 589999999987 55
Q ss_pred ccCCCCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCCCCcccccccccccCC-------------CCCCEEe
Q 044195 948 FSSPIDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSETRLLQDI-------------RSLNRLH 1014 (1024)
Q Consensus 948 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l-------------~~L~~L~ 1014 (1024)
.++. .+++|+.|++++| .++.+|. .+++|+.|++++| .++.++.. |..+..+ ++|+.|+
T Consensus 331 ~lp~-~~~~L~~L~L~~N-~l~~lp~----~l~~L~~L~L~~N-~l~~l~~i-p~~l~~L~~n~~~~~i~~~~~~L~~L~ 402 (454)
T 1jl5_A 331 ELPA-LPPRLERLIASFN-HLAEVPE----LPQNLKQLHVEYN-PLREFPDI-PESVEDLRMNSHLAEVPELPQNLKQLH 402 (454)
T ss_dssp CCCC-CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSS-CCSSCCCC-CTTCCEEECCC----------------
T ss_pred cccc-cCCcCCEEECCCC-ccccccc----hhhhccEEECCCC-CCCcCCCC-hHHHHhhhhcccccccccccCcCCEEE
Confidence 4443 4789999999986 5666775 4789999999998 55554333 6677766 8899999
Q ss_pred eeCCCC
Q 044195 1015 ISRCPQ 1020 (1024)
Q Consensus 1015 l~~c~~ 1020 (1024)
+++++-
T Consensus 403 ls~N~l 408 (454)
T 1jl5_A 403 VETNPL 408 (454)
T ss_dssp ------
T ss_pred CCCCcC
Confidence 999864
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.1e-22 Score=229.78 Aligned_cols=304 Identities=19% Similarity=0.145 Sum_probs=194.3
Q ss_pred CCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCccccC-ccccc
Q 044195 561 GVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQILP-QSINS 638 (1024)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp-~~i~~ 638 (1024)
.+++++.|.+.++. +.......+..+++|++|+|++| .+..+| ..+.++++|++|+|++|.++.+| ..+.+
T Consensus 43 ~l~~l~~l~l~~~~------l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 43 TLNNQKIVTFKNST------MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GGCCCSEEEEESCE------ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCceEEEecCCc------hhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 45677777776653 22222223467788888888888 576665 46788888888888888888764 44778
Q ss_pred CCCCcEEecCCCccccccccc-cCCCCcccEEeccCCccccccCc-cCCCCCCCCccCceeeCCCCCcccccccCcccCC
Q 044195 639 LYNLHTVLLEDCRRLKKLCKD-MGNLTKLHHLRNSNVHSLEEMPK-GFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQ 716 (1024)
Q Consensus 639 L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 716 (1024)
+++|++|++++| .+..+|.. ++++++|++|++++|. +..++. .++.+++|+.|....+. +.
T Consensus 116 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~---------------l~ 178 (390)
T 3o6n_A 116 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR---------------LT 178 (390)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSC---------------CS
T ss_pred CCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCc---------------CC
Confidence 888888888887 66777766 4778888888888887 555543 36667777666322110 00
Q ss_pred CceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCC
Q 044195 717 GTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTK 796 (1024)
Q Consensus 717 ~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 796 (1024)
.. .+..+++|+.|++++|.. ..+..+++|+.|++++|....
T Consensus 179 ---------~~---------~~~~l~~L~~L~l~~n~l---------------------~~~~~~~~L~~L~l~~n~l~~ 219 (390)
T 3o6n_A 179 ---------HV---------DLSLIPSLFHANVSYNLL---------------------STLAIPIAVEELDASHNSINV 219 (390)
T ss_dssp ---------BC---------CGGGCTTCSEEECCSSCC---------------------SEEECCSSCSEEECCSSCCCE
T ss_pred ---------cc---------ccccccccceeecccccc---------------------cccCCCCcceEEECCCCeeee
Confidence 00 123456777777777654 223445678888888888777
Q ss_pred CCcccCCCCCCCceEEEEecCCCCCCCCCCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeecccccccccc
Q 044195 797 FPIWLGDFPFSKLVSLKFEYCGMCTSLPSVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEW 876 (1024)
Q Consensus 797 ~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 876 (1024)
+|... +++|+.|++++|.. ...+.++.+++|++|++++|......+..+ ..+++|+.|+++++ .+..+
T Consensus 220 ~~~~~----~~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~------~~l~~L~~L~L~~n-~l~~~ 287 (390)
T 3o6n_A 220 VRGPV----NVELTILKLQHNNL-TDTAWLLNYPGLVEVDLSYNELEKIMYHPF------VKMQRLERLYISNN-RLVAL 287 (390)
T ss_dssp EECCC----CSSCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCEEESGGG------TTCSSCCEEECCSS-CCCEE
T ss_pred ccccc----cccccEEECCCCCC-cccHHHcCCCCccEEECCCCcCCCcChhHc------cccccCCEEECCCC-cCccc
Confidence 66543 57888999988864 345677888888888888875333322222 12566666666663 33332
Q ss_pred ccccccccccccCcccceeeeccCcCCcccCCCCCCCccEEEEecccCccccCCCCCCcCEEEEccCCCccccCCCCCCC
Q 044195 877 IPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLPERLLLLEKLVIQSCKQLLVTIQCLPALSELQIRGCRRVVFSSPIDFSS 956 (1024)
Q Consensus 877 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~ 956 (1024)
... ... +++|+.|++++| .++ .+ +..+..+++|+.|++++|+ +...+...+++
T Consensus 288 ~~~--~~~----l~~L~~L~L~~n-~l~-~~------------------~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~ 340 (390)
T 3o6n_A 288 NLY--GQP----IPTLKVLDLSHN-HLL-HV------------------ERNQPQFDRLENLYLDHNS-IVTLKLSTHHT 340 (390)
T ss_dssp ECS--SSC----CTTCCEEECCSS-CCC-CC------------------GGGHHHHTTCSEEECCSSC-CCCCCCCTTCC
T ss_pred Ccc--cCC----CCCCCEEECCCC-cce-ec------------------CccccccCcCCEEECCCCc-cceeCchhhcc
Confidence 211 111 566666666666 444 22 3334556777777777776 55556667778
Q ss_pred ccEEEEcCCC
Q 044195 957 LKSVFLGDIA 966 (1024)
Q Consensus 957 L~~L~l~~c~ 966 (1024)
|+.|++++|+
T Consensus 341 L~~L~l~~N~ 350 (390)
T 3o6n_A 341 LKNLTLSHND 350 (390)
T ss_dssp CSEEECCSSC
T ss_pred CCEEEcCCCC
Confidence 8888887755
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=2.5e-22 Score=232.36 Aligned_cols=131 Identities=15% Similarity=0.184 Sum_probs=87.7
Q ss_pred cccceeEEEEEccCCCCCcccccccCCCCceEEecCCCCCCCCCchhhhh-hhhhCCCCceEEEEeCCCCCcccC-Cccc
Q 044195 536 FSQSLRHFSYIRGECDGGTRFDFIRGVQQLRTFLPMKLSDYGGDYLAWSV-LQLLLDLPRLRVFSLCGYCNIIDL-PNEI 613 (1024)
Q Consensus 536 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~l~~l-p~~l 613 (1024)
.+..++++.+..+.... .....+.++++|++|.+.++. +.... +..|.++++|++|+|++| .+..+ |..+
T Consensus 28 l~~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~------~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 99 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQT------PGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAF 99 (455)
T ss_dssp CCTTCCEEECCSSCCCE-ECTTTTSSCTTCCEEECCCCS------TTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTT
T ss_pred CCCccCEEEecCCccCc-CChhHhccCccccEEECcCCc------ccceECcccccccccCCEEeCCCC-ccCccChhhc
Confidence 45667777777664321 223456677788888877664 22122 344677788888888887 45554 6677
Q ss_pred cCCCCCcEeeccCCCccc-cCcc--cccCCCCcEEecCCCcccccc-ccc-cCCCCcccEEeccCCc
Q 044195 614 GNLKHLRFLNLSRTNIQI-LPQS--INSLYNLHTVLLEDCRRLKKL-CKD-MGNLTKLHHLRNSNVH 675 (1024)
Q Consensus 614 ~~l~~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~-i~~L~~L~~L~l~~~~ 675 (1024)
+++++|++|+|++|.++. .|.. +.++++|++|++++| .+..+ |.. +.++++|++|++++|.
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCc
Confidence 888888888888887774 3444 777888888888887 44444 544 6778888888888877
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=6.9e-22 Score=239.65 Aligned_cols=426 Identities=17% Similarity=0.082 Sum_probs=248.4
Q ss_pred CCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCccccCc-ccccCC
Q 044195 563 QQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQILPQ-SINSLY 640 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~-~i~~L~ 640 (1024)
.+++.|.+.++. +.......|.++++|++|+|++| .+..+| ..|.++++|++|+|++|.++.+|. .|.+|+
T Consensus 52 ~~~~~LdLs~N~------i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSFNP------LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp TTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred cCCCEEEeeCCC------CCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 378999998875 44444567899999999999999 788886 468999999999999999999886 479999
Q ss_pred CCcEEecCCCcccccccc-ccCCCCcccEEeccCCccccc--cCccCCCCCCCCccCceeeCCCCCcccccccCcccCCC
Q 044195 641 NLHTVLLEDCRRLKKLCK-DMGNLTKLHHLRNSNVHSLEE--MPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQG 717 (1024)
Q Consensus 641 ~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 717 (1024)
+|++|++++| .+..+|. .++++++|++|++++|. +.. +|..++.+++|++|....+ .........+..+.++..
T Consensus 125 ~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 125 SLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp TCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTT
T ss_pred CCCEEECCCC-cCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCc-cccccccccccchhhhhh
Confidence 9999999998 7777775 48999999999999998 554 5667888999998854333 222223334444443331
Q ss_pred ceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCC---------ccccccccccch------hhHHHHhhc-----
Q 044195 718 TLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSC---------ISNIRNEDAVDL------ETQTRVLDM----- 777 (1024)
Q Consensus 718 ~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---------~~~l~~~~~~~~------~~~~~~~~~----- 777 (1024)
......+.... ...+.........+..+.+..+.... +..+........ .........
T Consensus 202 ~~~~~~ls~n~--l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 279 (635)
T 4g8a_A 202 LNLSLDLSLNP--MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 279 (635)
T ss_dssp CCCEEECTTCC--CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG
T ss_pred hhhhhhcccCc--ccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccccc
Confidence 11111111111 01111112222344556665543210 000000000000 000000000
Q ss_pred ----------------------cCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCCCCCCCCCCcee
Q 044195 778 ----------------------LKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLPSVGQLPVLKHL 835 (1024)
Q Consensus 778 ----------------------l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 835 (1024)
+....+++.+.+.++.....+... ...+|+.|++.+|...... ...++.|+.+
T Consensus 280 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~--~~~l~~L~~l 354 (635)
T 4g8a_A 280 NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNCKFGQFP--TLKLKSLKRL 354 (635)
T ss_dssp GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGG---SCCCCSEEEEESCEESSCC--CCBCTTCCEE
T ss_pred chhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccc---cchhhhhhhcccccccCcC--cccchhhhhc
Confidence 111122233333222222211111 1334555555555422211 1234555555
Q ss_pred eecCCCCceEeccccccCCCCCCCCCcceeeccccccccccc-cccccc------------------cccccCcccceee
Q 044195 836 EMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWI-PRGFAQ------------------EVNEVFPKLRKLS 896 (1024)
Q Consensus 836 ~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~------------------~~~~~~~~L~~L~ 896 (1024)
.+.++..... .....+++|+.|+++......... +..... .....+++|+.++
T Consensus 355 ~l~~n~~~~~--------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~ 426 (635)
T 4g8a_A 355 TFTSNKGGNA--------FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLD 426 (635)
T ss_dssp EEESCCSCCB--------CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEE
T ss_pred ccccccCCCC--------cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchh
Confidence 5554422111 111236777777776532110000 000000 0011256677777
Q ss_pred eccCcCCcccCC----CCCCCccEEEEecccC---ccccCCCCCCcCEEEEccCCCccccC---CCCCCCccEEEEcCCC
Q 044195 897 LLRCSKLQGTLP----ERLLLLEKLVIQSCKQ---LLVTIQCLPALSELQIRGCRRVVFSS---PIDFSSLKSVFLGDIA 966 (1024)
Q Consensus 897 l~~c~~L~~~lp----~~l~~L~~L~l~~c~~---l~~~l~~l~~L~~L~l~~~~~l~~~~---~~~l~~L~~L~l~~c~ 966 (1024)
+..|.... ..+ ..+++++.++++.|.. .+..+..+++|+.|++++|....... ...+++|++|++++|
T Consensus 427 l~~~~~~~-~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N- 504 (635)
T 4g8a_A 427 FQHSNLKQ-MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC- 504 (635)
T ss_dssp CTTSEEES-TTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-
T ss_pred hhhccccc-cccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-
Confidence 76663332 222 3567777888877642 23456778899999999987554433 356789999999986
Q ss_pred CcccchhhhcCCCCCCCEEeeecCCCCCcccccccccccCCCCCCEEeeeCCC
Q 044195 967 NQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSETRLLQDIRSLNRLHISRCP 1019 (1024)
Q Consensus 967 ~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l~~L~~L~l~~c~ 1019 (1024)
.++.++...+.++++|++|++++| +++.++ |..+.++++|+.|+++++.
T Consensus 505 ~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~---~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 505 QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLD---TFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTS-CCCBCC---CGGGTTCTTCCEEECTTSC
T ss_pred ccCCcChHHHcCCCCCCEEECCCC-cCCCCC---hhHHhCCCCCCEEECCCCc
Confidence 577777778899999999999999 677774 4578999999999999883
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=1.5e-22 Score=225.10 Aligned_cols=302 Identities=17% Similarity=0.204 Sum_probs=166.8
Q ss_pred cccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccc
Q 044195 558 FIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSIN 637 (1024)
Q Consensus 558 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~ 637 (1024)
.+..+++|++|.+.++. + ...+.+..+++|++|++++| .+..+|. +.++++|++|++++|.++.+| .+.
T Consensus 39 ~~~~l~~L~~L~l~~~~------i--~~~~~~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~ 107 (347)
T 4fmz_A 39 TQEELESITKLVVAGEK------V--ASIQGIEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDIS-ALQ 107 (347)
T ss_dssp CHHHHTTCSEEECCSSC------C--CCCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGT
T ss_pred cchhcccccEEEEeCCc------c--ccchhhhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccCch-HHc
Confidence 34456677777776654 1 11234666777888888877 6777766 777788888888888777765 477
Q ss_pred cCCCCcEEecCCCccccccccccCCCCcccEEeccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCC
Q 044195 638 SLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQG 717 (1024)
Q Consensus 638 ~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 717 (1024)
.+++|++|++++| .+..+|. +..+++|++|++++|..+..++ .++.+++|+.|....+.. .....
T Consensus 108 ~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~---~~~~~--------- 172 (347)
T 4fmz_A 108 NLTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKV---KDVTP--------- 172 (347)
T ss_dssp TCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCC---CCCGG---------
T ss_pred CCCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCc---CCchh---------
Confidence 7888888888877 5666655 7777888888888776444433 366666666653221111 00111
Q ss_pred ceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCC
Q 044195 718 TLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKF 797 (1024)
Q Consensus 718 ~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 797 (1024)
+..+++|++|++++|.... ...+..+++|+.|++++|.....
T Consensus 173 --------------------~~~l~~L~~L~l~~n~l~~------------------~~~~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 173 --------------------IANLTDLYSLSLNYNQIED------------------ISPLASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp --------------------GGGCTTCSEEECTTSCCCC------------------CGGGGGCTTCCEEECCSSCCCCC
T ss_pred --------------------hccCCCCCEEEccCCcccc------------------cccccCCCccceeecccCCCCCC
Confidence 2233445555554444311 01133445555555555554444
Q ss_pred CcccCCCCCCCceEEEEecCCCCCCCCCCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccc
Q 044195 798 PIWLGDFPFSKLVSLKFEYCGMCTSLPSVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWI 877 (1024)
Q Consensus 798 p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 877 (1024)
+. +. .+++|+.|++++|... .++.+..+++|++|++++|. +..++ . ...+++|+.|+++++ .+..+.
T Consensus 215 ~~-~~--~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~-l~~~~--~-----~~~l~~L~~L~l~~n-~l~~~~ 281 (347)
T 4fmz_A 215 TP-VA--NMTRLNSLKIGNNKIT-DLSPLANLSQLTWLEIGTNQ-ISDIN--A-----VKDLTKLKMLNVGSN-QISDIS 281 (347)
T ss_dssp GG-GG--GCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSC-CCCCG--G-----GTTCTTCCEEECCSS-CCCCCG
T ss_pred ch-hh--cCCcCCEEEccCCccC-CCcchhcCCCCCEEECCCCc-cCCCh--h-----HhcCCCcCEEEccCC-ccCCCh
Confidence 33 21 2455555555555422 22335555555555555542 22221 1 122555666655553 233221
Q ss_pred cccccccccccCcccceeeeccCcCCcccCC---CCCCCccEEEEecccCc-cccCCCCCCcCEEEEccCC
Q 044195 878 PRGFAQEVNEVFPKLRKLSLLRCSKLQGTLP---ERLLLLEKLVIQSCKQL-LVTIQCLPALSELQIRGCR 944 (1024)
Q Consensus 878 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp---~~l~~L~~L~l~~c~~l-~~~l~~l~~L~~L~l~~~~ 944 (1024)
. ... +++|+.|++++| .+++..| ..+++|+.|++++|+.. ...+..+++|++|++++|+
T Consensus 282 ~---~~~----l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 282 V---LNN----LSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp G---GGG----CTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC-
T ss_pred h---hcC----CCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhc
Confidence 1 111 666777777776 4443333 35667777777766521 1126677888888888876
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=1.1e-21 Score=228.14 Aligned_cols=180 Identities=19% Similarity=0.175 Sum_probs=97.1
Q ss_pred cCCCCCccEEEEEecCCCCCCcc-cCCCCCCCceEEEEecCCCCCCCC-CCCCCCCCceeeecCCCCceEeccccccCCC
Q 044195 778 LKPHQKLEELTITGYGGTKFPIW-LGDFPFSKLVSLKFEYCGMCTSLP-SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSC 855 (1024)
Q Consensus 778 l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 855 (1024)
+..+++|+.|++++|....+|.. +. .+++|+.|++++|......+ .+..+++|+.|++++|+.+..++.....
T Consensus 148 ~~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--- 222 (477)
T 2id5_A 148 FSGLNSLEQLTLEKCNLTSIPTEALS--HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY--- 222 (477)
T ss_dssp STTCTTCCEEEEESCCCSSCCHHHHT--TCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT---
T ss_pred ccCCCCCCEEECCCCcCcccChhHhc--ccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc---
Confidence 44455566666666655555432 22 25666666666665433222 4556666666666666555544332211
Q ss_pred CCCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCcccCCCCCCCccEEEEecccCccccCCCCCCc
Q 044195 856 SAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLPERLLLLEKLVIQSCKQLLVTIQCLPAL 935 (1024)
Q Consensus 856 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~L~~L~l~~c~~l~~~l~~l~~L 935 (1024)
..+|++|+++++ .+..+....+.. +++|+.|++++| .++ .++ +..+..+++|
T Consensus 223 ---~~~L~~L~l~~n-~l~~~~~~~~~~-----l~~L~~L~Ls~n-~l~-~~~-----------------~~~~~~l~~L 274 (477)
T 2id5_A 223 ---GLNLTSLSITHC-NLTAVPYLAVRH-----LVYLRFLNLSYN-PIS-TIE-----------------GSMLHELLRL 274 (477)
T ss_dssp ---TCCCSEEEEESS-CCCSCCHHHHTT-----CTTCCEEECCSS-CCC-EEC-----------------TTSCTTCTTC
T ss_pred ---CccccEEECcCC-cccccCHHHhcC-----ccccCeeECCCC-cCC-ccC-----------------hhhccccccC
Confidence 123444444332 122111111111 444444444444 232 111 2346677888
Q ss_pred CEEEEccCCCccccCC---CCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCC
Q 044195 936 SELQIRGCRRVVFSSP---IDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRA 992 (1024)
Q Consensus 936 ~~L~l~~~~~l~~~~~---~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~ 992 (1024)
++|++++|. +...+. ..+++|+.|++++| .++.++...+.++++|+.|++++|+-
T Consensus 275 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 275 QEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CEEECCSSC-CSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred CEEECCCCc-cceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCc
Confidence 888888887 433322 45678888888875 56667766777788888888887743
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=3.9e-22 Score=237.95 Aligned_cols=304 Identities=18% Similarity=0.144 Sum_probs=193.4
Q ss_pred CCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCccccCcc-ccc
Q 044195 561 GVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQILPQS-INS 638 (1024)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~~-i~~ 638 (1024)
.+.+++.+.+.++. +.......+..+++|++|+|++| .+..+| ..++.+++|++|+|++|.++.+|+. +++
T Consensus 49 ~l~~l~~l~l~~~~------l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 49 TLNNQKIVTFKNST------MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GGCCCSEEEESSCE------ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCceEEEeeCCC------CCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 35667777776653 22222233467788888888888 566665 4778888888888888888876544 578
Q ss_pred CCCCcEEecCCCccccccccc-cCCCCcccEEeccCCccccccCc-cCCCCCCCCccCceeeCCCCCcccccccCcccCC
Q 044195 639 LYNLHTVLLEDCRRLKKLCKD-MGNLTKLHHLRNSNVHSLEEMPK-GFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQ 716 (1024)
Q Consensus 639 L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 716 (1024)
+++|++|++++| .+..+|.. ++++++|++|++++|. +..+++ .++.+++|+.|....+. +.
T Consensus 122 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~---------------l~ 184 (597)
T 3oja_B 122 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR---------------LT 184 (597)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSC---------------CS
T ss_pred CCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCC---------------CC
Confidence 888888888887 66677765 4788888888888887 555443 46777777766322110 00
Q ss_pred CceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCC
Q 044195 717 GTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTK 796 (1024)
Q Consensus 717 ~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 796 (1024)
.. .+..+++|+.|++++|.. ..+..+++|+.|++++|.+..
T Consensus 185 ---------~~---------~~~~l~~L~~L~l~~n~l---------------------~~l~~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 185 ---------HV---------DLSLIPSLFHANVSYNLL---------------------STLAIPIAVEELDASHNSINV 225 (597)
T ss_dssp ---------BC---------CGGGCTTCSEEECCSSCC---------------------SEEECCTTCSEEECCSSCCCE
T ss_pred ---------Cc---------ChhhhhhhhhhhcccCcc---------------------ccccCCchhheeeccCCcccc
Confidence 00 123356778888877764 223455678889998888777
Q ss_pred CCcccCCCCCCCceEEEEecCCCCCCCCCCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeecccccccccc
Q 044195 797 FPIWLGDFPFSKLVSLKFEYCGMCTSLPSVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEW 876 (1024)
Q Consensus 797 ~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 876 (1024)
+|..+ .++|+.|++++|... .++.++.+++|+.|+|++|......+..+ ..+++|+.|+++++ .+..+
T Consensus 226 ~~~~~----~~~L~~L~L~~n~l~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~------~~l~~L~~L~Ls~N-~l~~l 293 (597)
T 3oja_B 226 VRGPV----NVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPF------VKMQRLERLYISNN-RLVAL 293 (597)
T ss_dssp EECSC----CSCCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCEEESGGG------TTCSSCCEEECTTS-CCCEE
T ss_pred ccccc----CCCCCEEECCCCCCC-CChhhccCCCCCEEECCCCccCCCCHHHh------cCccCCCEEECCCC-CCCCC
Confidence 66544 468999999988744 45678888899999998875443333332 22677777777763 34433
Q ss_pred ccccccccccccCcccceeeeccCcCCcccCCCCCCCccEEEEecccCccccCCCCCCcCEEEEccCCCccccCCCCCCC
Q 044195 877 IPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLPERLLLLEKLVIQSCKQLLVTIQCLPALSELQIRGCRRVVFSSPIDFSS 956 (1024)
Q Consensus 877 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~ 956 (1024)
... ... +++|+.|++++| .++ .+| ..+..+++|+.|++++|. +...+...+++
T Consensus 294 ~~~--~~~----l~~L~~L~Ls~N-~l~-~i~------------------~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 346 (597)
T 3oja_B 294 NLY--GQP----IPTLKVLDLSHN-HLL-HVE------------------RNQPQFDRLENLYLDHNS-IVTLKLSTHHT 346 (597)
T ss_dssp ECS--SSC----CTTCCEEECCSS-CCC-CCG------------------GGHHHHTTCSEEECCSSC-CCCCCCCTTCC
T ss_pred Ccc--ccc----CCCCcEEECCCC-CCC-ccC------------------cccccCCCCCEEECCCCC-CCCcChhhcCC
Confidence 211 112 677777777777 454 343 334445556666666655 34445555666
Q ss_pred ccEEEEcCCC
Q 044195 957 LKSVFLGDIA 966 (1024)
Q Consensus 957 L~~L~l~~c~ 966 (1024)
|+.|++++|+
T Consensus 347 L~~L~l~~N~ 356 (597)
T 3oja_B 347 LKNLTLSHND 356 (597)
T ss_dssp CSEEECCSSC
T ss_pred CCEEEeeCCC
Confidence 6666666554
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=2.5e-20 Score=216.83 Aligned_cols=124 Identities=20% Similarity=0.250 Sum_probs=87.8
Q ss_pred CCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccC-CccccCCCCCcEeeccCCCccccCcc-cccCC
Q 044195 563 QQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDL-PNEIGNLKHLRFLNLSRTNIQILPQS-INSLY 640 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~~~i~~lp~~-i~~L~ 640 (1024)
++++.|.+.++. +....+..|..+++|++|+|++| .+..+ |..++++++|++|+|++|.++.+|.. +.+++
T Consensus 32 ~~l~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 104 (477)
T 2id5_A 32 TETRLLDLGKNR------IKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104 (477)
T ss_dssp TTCSEEECCSSC------CCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred CCCcEEECCCCc------cceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence 467777777664 33444456677888888888888 56655 67778888888888888888877754 67788
Q ss_pred CCcEEecCCCccccccccccCCCCcccEEeccCCcccccc-CccCCCCCCCCccC
Q 044195 641 NLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEM-PKGFGKLTCLTTLC 694 (1024)
Q Consensus 641 ~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~-p~~i~~l~~L~~L~ 694 (1024)
+|++|++++|......|..+.++++|++|++++|. +..+ |..++.+++|+.|.
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEE
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEE
Confidence 88888888874333345567888888888888877 4444 44567777777763
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=1.2e-20 Score=213.17 Aligned_cols=301 Identities=16% Similarity=0.170 Sum_probs=211.7
Q ss_pred ccceeEEEEEccCCCCCcccccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCC-ccccC
Q 044195 537 SQSLRHFSYIRGECDGGTRFDFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLP-NEIGN 615 (1024)
Q Consensus 537 ~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~ 615 (1024)
...++.+.+..+.... .....+..+++|++|.+.++. +....+..|..+++|++|+|++| .+..+| ..+++
T Consensus 44 l~~l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 115 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQ------IEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQN 115 (390)
T ss_dssp GCCCSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSC------CCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred cCCceEEEecCCchhh-CChhHhcccccCcEEECCCCc------ccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcC
Confidence 4667888887764322 122336788999999998875 44444457799999999999999 677775 56899
Q ss_pred CCCCcEeeccCCCccccCcc-cccCCCCcEEecCCCcccccc-ccccCCCCcccEEeccCCccccccCccCCCCCCCCcc
Q 044195 616 LKHLRFLNLSRTNIQILPQS-INSLYNLHTVLLEDCRRLKKL-CKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTL 693 (1024)
Q Consensus 616 l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L 693 (1024)
+++|++|+|++|.++.+|.. +.++++|++|++++| .+..+ |..+.++++|++|++++|. +..++ ++.+++|+.|
T Consensus 116 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~l~~L~~L 191 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHA 191 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSC-CSBCC--GGGCTTCSEE
T ss_pred CCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCc-CCccc--ccccccccee
Confidence 99999999999999999987 489999999999999 55555 4568999999999999998 66653 4556666665
Q ss_pred CceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHH
Q 044195 694 CRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTR 773 (1024)
Q Consensus 694 ~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~ 773 (1024)
....+ . +. .+....+|+.|++++|....++
T Consensus 192 ~l~~n------~---------l~--------------------~~~~~~~L~~L~l~~n~l~~~~--------------- 221 (390)
T 3o6n_A 192 NVSYN------L---------LS--------------------TLAIPIAVEELDASHNSINVVR--------------- 221 (390)
T ss_dssp ECCSS------C---------CS--------------------EEECCSSCSEEECCSSCCCEEE---------------
T ss_pred ecccc------c---------cc--------------------ccCCCCcceEEECCCCeeeecc---------------
Confidence 22111 0 00 0122346788888777652111
Q ss_pred HhhccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCC-CCCCCCCCceeeecCCCCceEecccccc
Q 044195 774 VLDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLP-SVGQLPVLKHLEMRGMDRVKSVGLEFYG 852 (1024)
Q Consensus 774 ~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~ 852 (1024)
...+++|+.|++++|.....+ ++.. +++|+.|++++|......| .+..+++|+.|++++|. +..++..+
T Consensus 222 ----~~~~~~L~~L~l~~n~l~~~~-~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-- 291 (390)
T 3o6n_A 222 ----GPVNVELTILKLQHNNLTDTA-WLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG-- 291 (390)
T ss_dssp ----CCCCSSCCEEECCSSCCCCCG-GGGG--CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSS--
T ss_pred ----ccccccccEEECCCCCCcccH-HHcC--CCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCccc--
Confidence 122468999999998887764 4443 8899999999997655544 67889999999999874 44443322
Q ss_pred CCCCCCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCcccCC-CCCCCccEEEEecc
Q 044195 853 NSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLP-ERLLLLEKLVIQSC 922 (1024)
Q Consensus 853 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp-~~l~~L~~L~l~~c 922 (1024)
..+++|+.|+++++ .+..+... + .. +++|+.|++++| .++ .+| ..+++|+.|++++|
T Consensus 292 ----~~l~~L~~L~L~~n-~l~~~~~~-~-~~----l~~L~~L~L~~N-~i~-~~~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 292 ----QPIPTLKVLDLSHN-HLLHVERN-Q-PQ----FDRLENLYLDHN-SIV-TLKLSTHHTLKNLTLSHN 349 (390)
T ss_dssp ----SCCTTCCEEECCSS-CCCCCGGG-H-HH----HTTCSEEECCSS-CCC-CCCCCTTCCCSEEECCSS
T ss_pred ----CCCCCCCEEECCCC-cceecCcc-c-cc----cCcCCEEECCCC-ccc-eeCchhhccCCEEEcCCC
Confidence 34899999999985 44443221 1 22 799999999999 566 333 34444555554444
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=1.6e-20 Score=224.12 Aligned_cols=302 Identities=16% Similarity=0.163 Sum_probs=216.4
Q ss_pred cceeEEEEEccCCCCCcccccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCC-ccccCC
Q 044195 538 QSLRHFSYIRGECDGGTRFDFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLP-NEIGNL 616 (1024)
Q Consensus 538 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l 616 (1024)
...+.+.+..+.... .....+..+++|++|.+.++. +....+..|..+++|++|+|++| .+..+| ..++++
T Consensus 51 ~~l~~l~l~~~~l~~-lp~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l 122 (597)
T 3oja_B 51 NNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQ------IEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNV 122 (597)
T ss_dssp CCCSEEEESSCEESE-ECTHHHHHCCCCSEEECTTSC------CCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred CCceEEEeeCCCCCC-cCHHHHccCCCCcEEECCCCC------CCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCC
Confidence 456667766553221 122345678999999998875 44444557899999999999999 687776 557999
Q ss_pred CCCcEeeccCCCccccCcc-cccCCCCcEEecCCCcccccc-ccccCCCCcccEEeccCCccccccCccCCCCCCCCccC
Q 044195 617 KHLRFLNLSRTNIQILPQS-INSLYNLHTVLLEDCRRLKKL-CKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTLC 694 (1024)
Q Consensus 617 ~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~ 694 (1024)
++|++|+|++|.++.+|.. ++++++|++|++++| .+..+ |..++++++|++|++++|. +..++ ++.+++|+.|.
T Consensus 123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~ 198 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHAN 198 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEE
T ss_pred CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhh
Confidence 9999999999999999887 489999999999999 55554 4569999999999999998 66664 45566666652
Q ss_pred ceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHH
Q 044195 695 RFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRV 774 (1024)
Q Consensus 695 ~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~ 774 (1024)
...+ . +. .+....+|+.|++++|....++
T Consensus 199 l~~n------~---------l~--------------------~l~~~~~L~~L~ls~n~l~~~~---------------- 227 (597)
T 3oja_B 199 VSYN------L---------LS--------------------TLAIPIAVEELDASHNSINVVR---------------- 227 (597)
T ss_dssp CCSS------C---------CS--------------------EEECCTTCSEEECCSSCCCEEE----------------
T ss_pred cccC------c---------cc--------------------cccCCchhheeeccCCcccccc----------------
Confidence 2110 0 00 1122346788888877652211
Q ss_pred hhccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCC-CCCCCCCCceeeecCCCCceEeccccccC
Q 044195 775 LDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLP-SVGQLPVLKHLEMRGMDRVKSVGLEFYGN 853 (1024)
Q Consensus 775 ~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 853 (1024)
-...++|+.|++++|.+... .++.. +++|+.|+|++|......| .++.+++|+.|+|++|. +..++..+
T Consensus 228 ---~~~~~~L~~L~L~~n~l~~~-~~l~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~--- 297 (597)
T 3oja_B 228 ---GPVNVELTILKLQHNNLTDT-AWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG--- 297 (597)
T ss_dssp ---CSCCSCCCEEECCSSCCCCC-GGGGG--CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSS---
T ss_pred ---cccCCCCCEEECCCCCCCCC-hhhcc--CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCccc---
Confidence 01236899999999887764 45543 8999999999998666555 68899999999999874 44443322
Q ss_pred CCCCCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCcccCCCCCCCccEEEEeccc
Q 044195 854 SCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLPERLLLLEKLVIQSCK 923 (1024)
Q Consensus 854 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~L~~L~l~~c~ 923 (1024)
..+++|+.|+++++ .+..+. ..+ .. +++|+.|++++| .+++.-+..+++|+.|++++|+
T Consensus 298 ---~~l~~L~~L~Ls~N-~l~~i~-~~~-~~----l~~L~~L~L~~N-~l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 298 ---QPIPTLKVLDLSHN-HLLHVE-RNQ-PQ----FDRLENLYLDHN-SIVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp ---SCCTTCCEEECCSS-CCCCCG-GGH-HH----HTTCSEEECCSS-CCCCCCCCTTCCCSEEECCSSC
T ss_pred ---ccCCCCcEEECCCC-CCCccC-ccc-cc----CCCCCEEECCCC-CCCCcChhhcCCCCEEEeeCCC
Confidence 34899999999985 344332 222 22 899999999999 6663333677888888888765
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.7e-20 Score=205.43 Aligned_cols=192 Identities=20% Similarity=0.309 Sum_probs=146.7
Q ss_pred CCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcccEE
Q 044195 590 LDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHL 669 (1024)
Q Consensus 590 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 669 (1024)
....++++|+|++| .+..+|..++++++|++|+|++|.++.+|..++++++|++|++++| .+..+|..++++++|++|
T Consensus 78 ~~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 78 ATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLREL 155 (328)
T ss_dssp HTSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEE
T ss_pred ccccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEE
Confidence 35688999999999 7999999999999999999999999999999999999999999999 677999999999999999
Q ss_pred eccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEE
Q 044195 670 RNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVL 749 (1024)
Q Consensus 670 ~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 749 (1024)
++++|..++.+|..++... ....+..+++|+.|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~---------------------------------------------~~~~~~~l~~L~~L~L 190 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTD---------------------------------------------ASGEHQGLVNLQSLRL 190 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC----------------------------------------------CCCEEESTTCCEEEE
T ss_pred ECCCCCCccccChhHhhcc---------------------------------------------chhhhccCCCCCEEEC
Confidence 9999876777776443210 0011344567777777
Q ss_pred EecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCC-CCCC
Q 044195 750 RWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLP-SVGQ 828 (1024)
Q Consensus 750 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~ 828 (1024)
++|.... .+..+..+++|+.|++++|....+|..+.. +++|+.|++++|...+.+| .++.
T Consensus 191 ~~n~l~~-----------------lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~--l~~L~~L~Ls~n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 191 EWTGIRS-----------------LPASIANLQNLKSLKIRNSPLSALGPAIHH--LPKLEELDLRGCTALRNYPPIFGG 251 (328)
T ss_dssp EEECCCC-----------------CCGGGGGCTTCCEEEEESSCCCCCCGGGGG--CTTCCEEECTTCTTCCBCCCCTTC
T ss_pred cCCCcCc-----------------chHhhcCCCCCCEEEccCCCCCcCchhhcc--CCCCCEEECcCCcchhhhHHHhcC
Confidence 7776521 123455667778888887777777766553 7778888888777766666 5677
Q ss_pred CCCCceeeecCCCCceEec
Q 044195 829 LPVLKHLEMRGMDRVKSVG 847 (1024)
Q Consensus 829 l~~L~~L~L~~~~~l~~~~ 847 (1024)
+++|+.|++++|+.+..++
T Consensus 252 l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp CCCCCEEECTTCTTCCBCC
T ss_pred CCCCCEEECCCCCchhhcc
Confidence 7777777777776555443
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=2.2e-19 Score=197.61 Aligned_cols=192 Identities=20% Similarity=0.210 Sum_probs=118.9
Q ss_pred ceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCc-ccccCCCCcEEecCCCcccccc-ccccCCCCcccEEec
Q 044195 594 RLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQ-SINSLYNLHTVLLEDCRRLKKL-CKDMGNLTKLHHLRN 671 (1024)
Q Consensus 594 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l 671 (1024)
+|++++++++ .+..+|..+. ++|++|++++|.++.+|. .+.++++|++|++++| .+..+ |..++++++|++|++
T Consensus 32 ~l~~l~~~~~-~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTS-CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCC-CccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEEC
Confidence 6778888887 6778886654 578888888888887765 6888888888888887 45554 677888888888888
Q ss_pred cCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEe
Q 044195 672 SNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRW 751 (1024)
Q Consensus 672 ~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 751 (1024)
++|. +..+|..+. ++|+.|... .... .......+..+++|+.|+++.
T Consensus 108 s~n~-l~~l~~~~~--~~L~~L~l~--------------------------~n~l----~~~~~~~~~~l~~L~~L~l~~ 154 (330)
T 1xku_A 108 SKNQ-LKELPEKMP--KTLQELRVH--------------------------ENEI----TKVRKSVFNGLNQMIVVELGT 154 (330)
T ss_dssp CSSC-CSBCCSSCC--TTCCEEECC--------------------------SSCC----CBBCHHHHTTCTTCCEEECCS
T ss_pred CCCc-CCccChhhc--ccccEEECC--------------------------CCcc----cccCHhHhcCCccccEEECCC
Confidence 8887 777776543 444444211 1000 001122355666777777776
Q ss_pred cCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCC-CCCCCC
Q 044195 752 CNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLP-SVGQLP 830 (1024)
Q Consensus 752 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~ 830 (1024)
|..... ......+..+++|+.|++++|....+|..+ +++|+.|++++|......+ .+..++
T Consensus 155 n~l~~~--------------~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~ 216 (330)
T 1xku_A 155 NPLKSS--------------GIENGAFQGMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLN 216 (330)
T ss_dssp SCCCGG--------------GBCTTGGGGCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred CcCCcc--------------CcChhhccCCCCcCEEECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCC
Confidence 654110 011233445666777777776666666543 2566666666665333322 455555
Q ss_pred CCceeeecCC
Q 044195 831 VLKHLEMRGM 840 (1024)
Q Consensus 831 ~L~~L~L~~~ 840 (1024)
+|+.|++++|
T Consensus 217 ~L~~L~Ls~n 226 (330)
T 1xku_A 217 NLAKLGLSFN 226 (330)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 6666666554
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=6.1e-22 Score=237.62 Aligned_cols=420 Identities=14% Similarity=0.031 Sum_probs=216.1
Q ss_pred cccCCCCceEEecCCCCCC--------CCCchhhhhhhhh-CCCCceEEEEeCCCCCccc-CCccccC-C-CCCcEeecc
Q 044195 558 FIRGVQQLRTFLPMKLSDY--------GGDYLAWSVLQLL-LDLPRLRVFSLCGYCNIID-LPNEIGN-L-KHLRFLNLS 625 (1024)
Q Consensus 558 ~~~~~~~Lr~L~l~~~~~~--------~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~l~~-lp~~l~~-l-~~L~~L~L~ 625 (1024)
.+..+++|+.|.+.++... .+..+....+..+ ..+++|++|+|++| .+.. .+..+.. + .+|++|+|+
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~ 146 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLD 146 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECc
Confidence 3446788999988664321 0111112223333 47889999999988 4543 3344444 3 349999998
Q ss_pred CCC-cc--ccCcccccCCCCcEEecCCCccccc----cccccCCCCcccEEeccCCcccc-----ccCccCCCCCCCCcc
Q 044195 626 RTN-IQ--ILPQSINSLYNLHTVLLEDCRRLKK----LCKDMGNLTKLHHLRNSNVHSLE-----EMPKGFGKLTCLTTL 693 (1024)
Q Consensus 626 ~~~-i~--~lp~~i~~L~~L~~L~l~~~~~l~~----lp~~i~~L~~L~~L~l~~~~~l~-----~~p~~i~~l~~L~~L 693 (1024)
+|. +. .++..+..+++|++|++++|..... ++.....+++|++|++++|. +. .++..+.++++|+.|
T Consensus 147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEE
T ss_pred CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEE
Confidence 876 32 3444456789999999999842221 33345678899999998887 43 334445567777777
Q ss_pred CceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHH
Q 044195 694 CRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTR 773 (1024)
Q Consensus 694 ~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~ 773 (1024)
....+... .....+..+++|+ .+.+....... ........+..+++|+.|.++.+.. ..
T Consensus 226 ~L~~~~~~--~l~~~~~~~~~L~-~L~l~~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~-----------------~~ 284 (592)
T 3ogk_B 226 KVGDFEIL--ELVGFFKAAANLE-EFCGGSLNEDI-GMPEKYMNLVFPRKLCRLGLSYMGP-----------------NE 284 (592)
T ss_dssp ECSSCBGG--GGHHHHHHCTTCC-EEEECBCCCCT-TCTTSSSCCCCCTTCCEEEETTCCT-----------------TT
T ss_pred eccCccHH--HHHHHHhhhhHHH-hhccccccccc-chHHHHHHhhccccccccCccccch-----------------hH
Confidence 44332111 1223344455555 55554321110 1112223445556666666654322 11
Q ss_pred HhhccCCCCCccEEEEEecCCCC--CCcccCCCCCCCceEEEEecCCCCCCCCC-CCCCCCCceeeecC----------C
Q 044195 774 VLDMLKPHQKLEELTITGYGGTK--FPIWLGDFPFSKLVSLKFEYCGMCTSLPS-VGQLPVLKHLEMRG----------M 840 (1024)
Q Consensus 774 ~~~~l~~~~~L~~L~l~~~~~~~--~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~----------~ 840 (1024)
....+..+++|++|++++|.... ++..+. .+++|+.|++.++.....++. ...+++|++|++++ |
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~--~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~ 362 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQ--KCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCCCCHHHHHHHHT--TCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred HHHHHhhcCCCcEEecCCCcCCHHHHHHHHH--hCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcccccccccc
Confidence 12234445667777776665321 111122 266777777764322122221 23456677777763 4
Q ss_pred CCceEeccccccCCCCCCCCCcceeeccccccccccccccccccccccCcccceeeecc---CcCCcccCC---------
Q 044195 841 DRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLR---CSKLQGTLP--------- 908 (1024)
Q Consensus 841 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~---c~~L~~~lp--------- 908 (1024)
..+...+.... ...+++|++|++ +++.+.+.....+... +++|+.|++++ |..+++ .|
T Consensus 363 ~~~~~~~~~~l----~~~~~~L~~L~l-~~~~l~~~~~~~l~~~----~~~L~~L~l~~~~~~n~l~~-~p~~~~~~~~~ 432 (592)
T 3ogk_B 363 GLVSQRGLIAL----AQGCQELEYMAV-YVSDITNESLESIGTY----LKNLCDFRLVLLDREERITD-LPLDNGVRSLL 432 (592)
T ss_dssp CCCCHHHHHHH----HHHCTTCSEEEE-EESCCCHHHHHHHHHH----CCSCCEEEEEECSCCSCCSS-CCCHHHHHHHH
T ss_pred CccCHHHHHHH----HhhCccCeEEEe-ecCCccHHHHHHHHhh----CCCCcEEEEeecCCCccccC-chHHHHHHHHH
Confidence 44433211110 012567777776 3344443322222222 56677777763 445552 22
Q ss_pred CCCCCccEEEEecccC-cc-----ccCCCCCCcCEEEEccCCCcccc----CCCCCCCccEEEEcCCCCcccch-hhhcC
Q 044195 909 ERLLLLEKLVIQSCKQ-LL-----VTIQCLPALSELQIRGCRRVVFS----SPIDFSSLKSVFLGDIANQVVLA-ALFEQ 977 (1024)
Q Consensus 909 ~~l~~L~~L~l~~c~~-l~-----~~l~~l~~L~~L~l~~~~~l~~~----~~~~l~~L~~L~l~~c~~l~~l~-~~~l~ 977 (1024)
..+++|+.|+++.|.. +. .....+++|++|++++|+ ++.. ....+++|++|++++|+ ++... .....
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~ 510 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVT 510 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHH
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHH
Confidence 2366777777765542 11 112336667777777665 3211 12455677777777766 33221 12234
Q ss_pred CCCCCCEEeeecCCCCCcccccccccccCCCCCCEEeeeC
Q 044195 978 GLPQLESLKIDSVRAPTYLWQSETRLLQDIRSLNRLHISR 1017 (1024)
Q Consensus 978 ~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l~~L~~L~l~~ 1017 (1024)
++++|+.|++++|+ ++..... .-...+|.|....+..
T Consensus 511 ~l~~L~~L~ls~n~-it~~~~~--~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 511 KLPSLRYLWVQGYR-ASMTGQD--LMQMARPYWNIELIPS 547 (592)
T ss_dssp HCSSCCEEEEESCB-CCTTCTT--GGGGCCTTEEEEEECC
T ss_pred hcCccCeeECcCCc-CCHHHHH--HHHHhCCCcEEEEecC
Confidence 56777777777774 4332111 1123455555554443
No 48
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=2.2e-18 Score=202.85 Aligned_cols=259 Identities=19% Similarity=0.127 Sum_probs=173.8
Q ss_pred CceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcccEEecc
Q 044195 593 PRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNS 672 (1024)
Q Consensus 593 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~ 672 (1024)
.++++|++++| .+..+|..+. ++|++|+|++|.++.+|. .+++|++|++++| .+..+|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSS-CCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCC-CcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECc
Confidence 45899999999 7889998776 799999999999999987 5789999999998 6778876 77899999999
Q ss_pred CCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEec
Q 044195 673 NVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWC 752 (1024)
Q Consensus 673 ~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 752 (1024)
+|. +..+|. .+++|+.| ++++|
T Consensus 110 ~N~-l~~l~~---~l~~L~~L------------------------------------------------------~L~~N 131 (622)
T 3g06_A 110 SNP-LTHLPA---LPSGLCKL------------------------------------------------------WIFGN 131 (622)
T ss_dssp SCC-CCCCCC---CCTTCCEE------------------------------------------------------ECCSS
T ss_pred CCc-CCCCCC---CCCCcCEE------------------------------------------------------ECCCC
Confidence 887 666554 22333333 22222
Q ss_pred CCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCCCCCCCCCC
Q 044195 753 NRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLPSVGQLPVL 832 (1024)
Q Consensus 753 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 832 (1024)
....++ ..+++|+.|++++|....+|.. +++|+.|++++|.. ..+| ..+++|
T Consensus 132 ~l~~lp--------------------~~l~~L~~L~Ls~N~l~~l~~~-----~~~L~~L~L~~N~l-~~l~--~~~~~L 183 (622)
T 3g06_A 132 QLTSLP--------------------VLPPGLQELSVSDNQLASLPAL-----PSELCKLWAYNNQL-TSLP--MLPSGL 183 (622)
T ss_dssp CCSCCC--------------------CCCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCC-SCCC--CCCTTC
T ss_pred CCCcCC--------------------CCCCCCCEEECcCCcCCCcCCc-----cCCCCEEECCCCCC-CCCc--ccCCCC
Confidence 211000 0124566666666655555531 45677777777653 3344 345666
Q ss_pred ceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCcccCCCCCC
Q 044195 833 KHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLPERLL 912 (1024)
Q Consensus 833 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~ 912 (1024)
+.|++++|. +..+.. . +++|+.|++++| .++ .+|..++
T Consensus 184 ~~L~Ls~N~-------------------------------l~~l~~-----~----~~~L~~L~L~~N-~l~-~l~~~~~ 221 (622)
T 3g06_A 184 QELSVSDNQ-------------------------------LASLPT-----L----PSELYKLWAYNN-RLT-SLPALPS 221 (622)
T ss_dssp CEEECCSSC-------------------------------CSCCCC-----C----CTTCCEEECCSS-CCS-SCCCCCT
T ss_pred cEEECCCCC-------------------------------CCCCCC-----c----cchhhEEECcCC-ccc-ccCCCCC
Confidence 666666542 111111 1 567888888887 677 6777777
Q ss_pred CccEEEEecccCccccCCCCCCcCEEEEccCCCccccCCCCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCC
Q 044195 913 LLEKLVIQSCKQLLVTIQCLPALSELQIRGCRRVVFSSPIDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRA 992 (1024)
Q Consensus 913 ~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~ 992 (1024)
+|+.|++++|..- ..-..+++|+.|++++|. ++.+|. .+++|+.|++++| .++.+|. .+.++++|+.|++++|+-
T Consensus 222 ~L~~L~Ls~N~L~-~lp~~l~~L~~L~Ls~N~-L~~lp~-~~~~L~~L~Ls~N-~L~~lp~-~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 222 GLKELIVSGNRLT-SLPVLPSELKELMVSGNR-LTSLPM-LPSGLLSLSVYRN-QLTRLPE-SLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp TCCEEECCSSCCS-CCCCCCTTCCEEECCSSC-CSCCCC-CCTTCCEEECCSS-CCCSCCG-GGGGSCTTCEEECCSCCC
T ss_pred CCCEEEccCCccC-cCCCCCCcCcEEECCCCC-CCcCCc-ccccCcEEeCCCC-CCCcCCH-HHhhccccCEEEecCCCC
Confidence 8888888777421 111456788888888886 555555 6778888988875 4667765 467888889999988854
Q ss_pred CC
Q 044195 993 PT 994 (1024)
Q Consensus 993 l~ 994 (1024)
.+
T Consensus 297 ~~ 298 (622)
T 3g06_A 297 SE 298 (622)
T ss_dssp CH
T ss_pred CC
Confidence 33
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=6.1e-20 Score=199.80 Aligned_cols=249 Identities=14% Similarity=0.161 Sum_probs=147.4
Q ss_pred CCceEEecCCCCCCCCCchhh--hhhhhhCCCCceEEEEeCC-CCCcccCCccccCCCCCcEeeccCCCcc-ccCccccc
Q 044195 563 QQLRTFLPMKLSDYGGDYLAW--SVLQLLLDLPRLRVFSLCG-YCNIIDLPNEIGNLKHLRFLNLSRTNIQ-ILPQSINS 638 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~--~~~~~l~~l~~L~~L~L~~-~~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~i~~ 638 (1024)
.+++.|.+.++. +.. ..+..+.++++|++|+|++ |.....+|..++++++|++|+|++|.++ .+|..+.+
T Consensus 50 ~~l~~L~L~~~~------l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLN------LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCC------CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred ceEEEEECCCCC------ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence 467777776654 333 4556677888888888884 5333467888888888888888888887 67888888
Q ss_pred CCCCcEEecCCCccccccccccCCCCcccEEeccCCccccccCccCCCCC-CCCccCceeeCCCCCcccccccCcccCCC
Q 044195 639 LYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLT-CLTTLCRFVVGKDSGSALRELKSLTNLQG 717 (1024)
Q Consensus 639 L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~-~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 717 (1024)
+++|++|++++|.....+|..++.+++|++|++++|.....+|..++.+. +|+.|....+. ..+..+
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~----------- 191 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIP----------- 191 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECC-----------
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCC-----------
Confidence 88888888888844446777888888888888888873337777777776 67766332211 111111
Q ss_pred ceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCC
Q 044195 718 TLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKF 797 (1024)
Q Consensus 718 ~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 797 (1024)
..+..+. |+.|++++|... ......+..+++|+.|++++|.....
T Consensus 192 ------------------~~~~~l~-L~~L~Ls~N~l~----------------~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 192 ------------------PTFANLN-LAFVDLSRNMLE----------------GDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp ------------------GGGGGCC-CSEEECCSSEEE----------------ECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred ------------------hHHhCCc-ccEEECcCCccc----------------CcCCHHHhcCCCCCEEECCCCceeee
Confidence 1122222 555555554431 01123344555566666655555433
Q ss_pred CcccCCCCCCCceEEEEecCCCCCCCC-CCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccc
Q 044195 798 PIWLGDFPFSKLVSLKFEYCGMCTSLP-SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEW 873 (1024)
Q Consensus 798 p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 873 (1024)
+..+.. +++|++|++++|.....+| .+..+++|++|++++|.....++.. ..+++|+.|++.+.+.+
T Consensus 237 ~~~~~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-------~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 237 LGKVGL--SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-------GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp GGGCCC--CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-------TTGGGSCGGGTCSSSEE
T ss_pred cCcccc--cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-------ccccccChHHhcCCCCc
Confidence 333322 5566666666665443444 4555666666666665433333221 22556666666654433
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=2.7e-20 Score=223.26 Aligned_cols=389 Identities=15% Similarity=0.131 Sum_probs=256.2
Q ss_pred CCCCceEEecCCCCCCCCCchhhhhhhhhCC-CCc-eEEEEeCCCCCcc--cCCccccCCCCCcEeeccCCCccc-----
Q 044195 561 GVQQLRTFLPMKLSDYGGDYLAWSVLQLLLD-LPR-LRVFSLCGYCNII--DLPNEIGNLKHLRFLNLSRTNIQI----- 631 (1024)
Q Consensus 561 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-l~~-L~~L~L~~~~~l~--~lp~~l~~l~~L~~L~L~~~~i~~----- 631 (1024)
.+++|+.|.+.++. ++...+..+.. ++. |++|+|++|..+. .++..+.++++|++|+|++|.+..
T Consensus 110 ~~~~L~~L~L~~~~------i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~ 183 (592)
T 3ogk_B 110 NLRQLKSVHFRRMI------VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183 (592)
T ss_dssp HCTTCCEEEEESCB------CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH
T ss_pred hCCCCCeEEeeccE------ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH
Confidence 67889999988764 55555666643 444 9999999885332 233444578999999999997653
Q ss_pred cCcccccCCCCcEEecCCCccc----cccccccCCCCcccEEeccCCccccccCccCCCCCCCCccCceeeCCC--CCcc
Q 044195 632 LPQSINSLYNLHTVLLEDCRRL----KKLCKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKD--SGSA 705 (1024)
Q Consensus 632 lp~~i~~L~~L~~L~l~~~~~l----~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~--~~~~ 705 (1024)
++.....+++|++|++++|... ..++..+.++++|++|++++|. +..+|..++.+++|+.|........ ....
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 262 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEK 262 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTS
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHH
Confidence 3344567899999999987432 3455566788999999999987 7778877888888888854322111 1223
Q ss_pred cccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCcc
Q 044195 706 LRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLE 785 (1024)
Q Consensus 706 ~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~ 785 (1024)
...+..+.+|+ .+.+... ....++..+..+++|++|++++|... .......+..+++|+
T Consensus 263 ~~~l~~~~~L~-~L~l~~~-----~~~~l~~~~~~~~~L~~L~Ls~~~l~---------------~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 263 YMNLVFPRKLC-RLGLSYM-----GPNEMPILFPFAAQIRKLDLLYALLE---------------TEDHCTLIQKCPNLE 321 (592)
T ss_dssp SSCCCCCTTCC-EEEETTC-----CTTTGGGGGGGGGGCCEEEETTCCCC---------------HHHHHHHHTTCTTCC
T ss_pred HHHhhcccccc-ccCcccc-----chhHHHHHHhhcCCCcEEecCCCcCC---------------HHHHHHHHHhCcCCC
Confidence 34555666666 6665442 22335556677889999999988741 233335567889999
Q ss_pred EEEEEecCCC-CCCcccCCCCCCCceEEEEec----------CCCCCC--CC-CCCCCCCCceeeecCCCCceEeccccc
Q 044195 786 ELTITGYGGT-KFPIWLGDFPFSKLVSLKFEY----------CGMCTS--LP-SVGQLPVLKHLEMRGMDRVKSVGLEFY 851 (1024)
Q Consensus 786 ~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~----------~~~~~~--l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~ 851 (1024)
.|++.++... .++.... .+++|++|++++ |...+. ++ ....+++|++|++. |..+........
T Consensus 322 ~L~L~~~~~~~~l~~~~~--~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l 398 (592)
T 3ogk_B 322 VLETRNVIGDRGLEVLAQ--YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESI 398 (592)
T ss_dssp EEEEEGGGHHHHHHHHHH--HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHH
T ss_pred EEeccCccCHHHHHHHHH--hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHH
Confidence 9999843221 1222222 378999999995 554432 22 13458999999994 444443222111
Q ss_pred cCCCCCCCCCcceeeccc---ccccccccc----ccccccccccCcccceeeeccCcC-CcccC----CCCCCCccEEEE
Q 044195 852 GNSCSAPFPSLETLCFVN---MQEWEEWIP----RGFAQEVNEVFPKLRKLSLLRCSK-LQGTL----PERLLLLEKLVI 919 (1024)
Q Consensus 852 ~~~~~~~~~~L~~L~l~~---~~~l~~~~~----~~~~~~~~~~~~~L~~L~l~~c~~-L~~~l----p~~l~~L~~L~l 919 (1024)
+ ..+++|+.|++++ ++.+.+... ...... +++|+.|++++|.. +++.. ...+++|+.|++
T Consensus 399 ~----~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~----~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L 470 (592)
T 3ogk_B 399 G----TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG----CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLL 470 (592)
T ss_dssp H----HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH----CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEE
T ss_pred H----hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh----CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeec
Confidence 1 1278999999985 445554211 011122 89999999998753 44322 246899999999
Q ss_pred ecccC----ccccCCCCCCcCEEEEccCCCcccc--C--CCCCCCccEEEEcCCCCcccchhhhc-CCCCCCCEEeeecC
Q 044195 920 QSCKQ----LLVTIQCLPALSELQIRGCRRVVFS--S--PIDFSSLKSVFLGDIANQVVLAALFE-QGLPQLESLKIDSV 990 (1024)
Q Consensus 920 ~~c~~----l~~~l~~l~~L~~L~l~~~~~l~~~--~--~~~l~~L~~L~l~~c~~l~~l~~~~l-~~l~~L~~L~l~~c 990 (1024)
++|.. ++..+..+++|++|+|++|+ ++.. + ...+++|+.|++++|+ ++......+ ..+|.|....+...
T Consensus 471 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 471 GYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence 99863 23456788999999999998 4422 1 2468999999999988 554433333 46788777666554
No 51
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=2.7e-21 Score=232.10 Aligned_cols=400 Identities=16% Similarity=0.156 Sum_probs=180.8
Q ss_pred ccCCCCceEEecCCCCCCCCC--------chhhhhhhhh-CCCCceEEEEeCCCCCccc-CCcccc-CCCCCcEeeccCC
Q 044195 559 IRGVQQLRTFLPMKLSDYGGD--------YLAWSVLQLL-LDLPRLRVFSLCGYCNIID-LPNEIG-NLKHLRFLNLSRT 627 (1024)
Q Consensus 559 ~~~~~~Lr~L~l~~~~~~~~~--------~~~~~~~~~l-~~l~~L~~L~L~~~~~l~~-lp~~l~-~l~~L~~L~L~~~ 627 (1024)
+..+++|++|.+.++...... .........+ ..+++|++|+|++| .+.. .+..+. .+++|++|+|++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 446677788777665311000 0001112222 46677777777777 3432 233343 5677777777777
Q ss_pred -Cccc--cCcccccCCCCcEEecCCCccccc-----cccccCCCCcccEEeccCCc-cc--cccCccCCCCCCCCccCce
Q 044195 628 -NIQI--LPQSINSLYNLHTVLLEDCRRLKK-----LCKDMGNLTKLHHLRNSNVH-SL--EEMPKGFGKLTCLTTLCRF 696 (1024)
Q Consensus 628 -~i~~--lp~~i~~L~~L~~L~l~~~~~l~~-----lp~~i~~L~~L~~L~l~~~~-~l--~~~p~~i~~l~~L~~L~~~ 696 (1024)
.+.. ++..+.++++|++|++++|. +.. ++.....+++|++|++++|. .+ ..++.-+..+++|+.|
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L--- 216 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL--- 216 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEE---
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEE---
Confidence 4443 45545567777777777773 322 22223456677777777664 01 0111111223444444
Q ss_pred eeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhh
Q 044195 697 VVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLD 776 (1024)
Q Consensus 697 ~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 776 (1024)
.+.+... . ..++..+..+++|++|.+..+... .. .........
T Consensus 217 -----------------------~L~~~~~---~-~~l~~~~~~~~~L~~L~l~~~~~~---------~~-~~~~~~l~~ 259 (594)
T 2p1m_B 217 -----------------------KLNRAVP---L-EKLATLLQRAPQLEELGTGGYTAE---------VR-PDVYSGLSV 259 (594)
T ss_dssp -----------------------ECCTTSC---H-HHHHHHHHHCTTCSEEECSBCCCC---------CC-HHHHHHHHH
T ss_pred -----------------------ecCCCCc---H-HHHHHHHhcCCcceEcccccccCc---------cc-hhhHHHHHH
Confidence 3322211 1 113334445556666655443210 00 011122233
Q ss_pred ccCCCCCccEE-EEEecCCCCCCcccCCCCCCCceEEEEecCCCCCC--CC-CCCCCCCCceeeecCCCCceEecccccc
Q 044195 777 MLKPHQKLEEL-TITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTS--LP-SVGQLPVLKHLEMRGMDRVKSVGLEFYG 852 (1024)
Q Consensus 777 ~l~~~~~L~~L-~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~--l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~ 852 (1024)
.+..+++|+.| .+.+.....+|..+. .+++|++|++++|. +.. +. .+..+++|+.|++++| +...+....
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l- 333 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYS--VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVL- 333 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHH--HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHH-
T ss_pred HHhcCCCcccccCCcccchhhHHHHHH--hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHH-
Confidence 44555666665 222222222222221 24566666666665 221 11 1345666666666655 111100000
Q ss_pred CCCCCCCCCcceeeccc--------cccccccccccccccccccCcccceeeeccCcCCcccCC----CCCCCccEEEEe
Q 044195 853 NSCSAPFPSLETLCFVN--------MQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLP----ERLLLLEKLVIQ 920 (1024)
Q Consensus 853 ~~~~~~~~~L~~L~l~~--------~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp----~~l~~L~~L~l~ 920 (1024)
...+++|++|++.+ +..+.+.....+... +++|+.|.+. |..+++..+ ..+++|+.|+++
T Consensus 334 ---~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~----~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 334 ---ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG----CPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp ---HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHH----CTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred ---HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHh----chhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEee
Confidence 01156666666633 222222111111111 5666666443 334442211 235666666666
Q ss_pred -----cccCcc---------ccCCCCCCcCEEEEccCCCccccCC----CCCCCccEEEEcCCCCcccchhhhc-CCCCC
Q 044195 921 -----SCKQLL---------VTIQCLPALSELQIRGCRRVVFSSP----IDFSSLKSVFLGDIANQVVLAALFE-QGLPQ 981 (1024)
Q Consensus 921 -----~c~~l~---------~~l~~l~~L~~L~l~~~~~l~~~~~----~~l~~L~~L~l~~c~~l~~l~~~~l-~~l~~ 981 (1024)
+|..+. ..+..+++|+.|++++ .++.... ..+++|+.|++++|. ++......+ .++++
T Consensus 406 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~ 482 (594)
T 2p1m_B 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDS 482 (594)
T ss_dssp ESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTT
T ss_pred cccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCC
Confidence 333332 1134456666666644 2221111 125566666666654 222222122 44666
Q ss_pred CCEEeeecCCCCCcccccccccccCCCCCCEEeeeCCCC
Q 044195 982 LESLKIDSVRAPTYLWQSETRLLQDIRSLNRLHISRCPQ 1020 (1024)
Q Consensus 982 L~~L~l~~c~~l~~l~~~~p~~l~~l~~L~~L~l~~c~~ 1020 (1024)
|+.|++++|+. +.... +..+..+++|+.|++++|+.
T Consensus 483 L~~L~L~~n~~-~~~~~--~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 483 LRKLEIRDCPF-GDKAL--LANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CCEEEEESCSC-CHHHH--HHTGGGGGGSSEEEEESSCC
T ss_pred cCEEECcCCCC-cHHHH--HHHHHhCCCCCEEeeeCCCC
Confidence 66666666643 22110 11234456666666666653
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=1.5e-21 Score=226.34 Aligned_cols=229 Identities=17% Similarity=0.142 Sum_probs=123.4
Q ss_pred CCceEEecCCCCCCCCCchhhhhhhh-hCCCCceEEEEeCCCCCcc-----cCCccccCCCCCcEeeccCCCccc-cCcc
Q 044195 563 QQLRTFLPMKLSDYGGDYLAWSVLQL-LLDLPRLRVFSLCGYCNII-----DLPNEIGNLKHLRFLNLSRTNIQI-LPQS 635 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~-----~lp~~l~~l~~L~~L~L~~~~i~~-lp~~ 635 (1024)
++|+.|.+.++. ++...... +..+++|++|+|++| .+. .+|..+..+++|++|+|++|.+.. .+..
T Consensus 3 ~~l~~L~Ls~~~------l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 75 (461)
T 1z7x_W 3 LDIQSLDIQCEE------LSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC 75 (461)
T ss_dssp EEEEEEEEESCC------CCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred ccceehhhhhcc------cCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHH
Confidence 456667766553 33333333 466777778888777 455 345666777778888888777763 2222
Q ss_pred c-ccCC----CCcEEecCCCcccc-----ccccccCCCCcccEEeccCCcccccc-CccC-----CCCCCCCccCceeeC
Q 044195 636 I-NSLY----NLHTVLLEDCRRLK-----KLCKDMGNLTKLHHLRNSNVHSLEEM-PKGF-----GKLTCLTTLCRFVVG 699 (1024)
Q Consensus 636 i-~~L~----~L~~L~l~~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~~-p~~i-----~~l~~L~~L~~~~~~ 699 (1024)
+ ..+. +|++|++++| .+. .+|..+.++++|++|++++|. +... +..+ ...++|++|
T Consensus 76 l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L------ 147 (461)
T 1z7x_W 76 VLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKL------ 147 (461)
T ss_dssp HHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEE------
T ss_pred HHHHHhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEE------
Confidence 2 2244 5778888777 333 456667777788888877776 4321 1111 112233333
Q ss_pred CCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccC
Q 044195 700 KDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLK 779 (1024)
Q Consensus 700 ~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 779 (1024)
.+............+...+..+++|++|++++|.... .........+.
T Consensus 148 --------------------~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~------------~~~~~l~~~l~ 195 (461)
T 1z7x_W 148 --------------------QLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE------------AGVRVLCQGLK 195 (461)
T ss_dssp --------------------ECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH------------HHHHHHHHHHH
T ss_pred --------------------ECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch------------HHHHHHHHHHh
Confidence 2222211111112234445566788888887776410 00011111121
Q ss_pred -CCCCccEEEEEecCCCC-----CCcccCCCCCCCceEEEEecCCCCCC----C-C-CCCCCCCCceeeecCC
Q 044195 780 -PHQKLEELTITGYGGTK-----FPIWLGDFPFSKLVSLKFEYCGMCTS----L-P-SVGQLPVLKHLEMRGM 840 (1024)
Q Consensus 780 -~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~L~~~~~~~~----l-~-~l~~l~~L~~L~L~~~ 840 (1024)
..++|+.|++++|.... ++.++.. +++|+.|++++|..... + + ....+++|++|++++|
T Consensus 196 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~--~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 196 DSPCQLEALKLESCGVTSDNCRDLCGIVAS--KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HSCCCCCEEECTTSCCBTTHHHHHHHHHHH--CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred cCCCCceEEEccCCCCcHHHHHHHHHHHHh--CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 34577777777776554 2333332 56777777777753221 0 1 1224667777777766
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=2.9e-18 Score=188.66 Aligned_cols=216 Identities=19% Similarity=0.235 Sum_probs=114.0
Q ss_pred CceEEEEeCCCCCcccCCc-cccCCCCCcEeeccCCCcccc-CcccccCCCCcEEecCCCccccccccccCCCCcccEEe
Q 044195 593 PRLRVFSLCGYCNIIDLPN-EIGNLKHLRFLNLSRTNIQIL-PQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLR 670 (1024)
Q Consensus 593 ~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 670 (1024)
++|++|+|++| .+..+|. .++++++|++|+|++|.++.+ |..+.++++|++|++++| .+..+|..+. ++|++|+
T Consensus 52 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEE
Confidence 46667777776 5666553 566677777777777776655 566677777777777776 5556665544 5677777
Q ss_pred ccCCccccccCcc-CCCCCCCCccCceeeCCCC-CcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEE
Q 044195 671 NSNVHSLEEMPKG-FGKLTCLTTLCRFVVGKDS-GSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALV 748 (1024)
Q Consensus 671 l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~-~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 748 (1024)
+++|. +..++.. ++++++|+.|....+.... +.....+..+++|+ .+.+...... .++..+ .++|++|+
T Consensus 128 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~-~L~l~~n~l~-----~l~~~~--~~~L~~L~ 198 (330)
T 1xku_A 128 VHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS-YIRIADTNIT-----TIPQGL--PPSLTELH 198 (330)
T ss_dssp CCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC-EEECCSSCCC-----SCCSSC--CTTCSEEE
T ss_pred CCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC-EEECCCCccc-----cCCccc--cccCCEEE
Confidence 77666 5544432 5566666665332221110 01112233333333 3333221111 011111 14566666
Q ss_pred EEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCc-ccCCCCCCCceEEEEecCCCCCCCC-CC
Q 044195 749 LRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPI-WLGDFPFSKLVSLKFEYCGMCTSLP-SV 826 (1024)
Q Consensus 749 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l~-~l 826 (1024)
+++|....+ ....+..+++|+.|++++|.....+. ++.. +++|+.|++++|... .+| .+
T Consensus 199 l~~n~l~~~----------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~-~lp~~l 259 (330)
T 1xku_A 199 LDGNKITKV----------------DAASLKGLNNLAKLGLSFNSISAVDNGSLAN--TPHLRELHLNNNKLV-KVPGGL 259 (330)
T ss_dssp CTTSCCCEE----------------CTGGGTTCTTCCEEECCSSCCCEECTTTGGG--STTCCEEECCSSCCS-SCCTTT
T ss_pred CCCCcCCcc----------------CHHHhcCCCCCCEEECCCCcCceeChhhccC--CCCCCEEECCCCcCc-cCChhh
Confidence 665554111 12344555666666666666554443 3322 566666666666533 333 45
Q ss_pred CCCCCCceeeecCC
Q 044195 827 GQLPVLKHLEMRGM 840 (1024)
Q Consensus 827 ~~l~~L~~L~L~~~ 840 (1024)
..+++|++|++++|
T Consensus 260 ~~l~~L~~L~l~~N 273 (330)
T 1xku_A 260 ADHKYIQVVYLHNN 273 (330)
T ss_dssp TTCSSCCEEECCSS
T ss_pred ccCCCcCEEECCCC
Confidence 66666666666655
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=3.5e-18 Score=188.10 Aligned_cols=93 Identities=28% Similarity=0.437 Sum_probs=72.5
Q ss_pred ceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccC-cccccCCCCcEEecCCCcccccc-ccccCCCCcccEEec
Q 044195 594 RLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILP-QSINSLYNLHTVLLEDCRRLKKL-CKDMGNLTKLHHLRN 671 (1024)
Q Consensus 594 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l 671 (1024)
+|++++++++ .+..+|..+. ++|++|++++|.++.+| ..+.++++|++|++++| .+..+ |..++++++|++|++
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCC-CccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEEC
Confidence 6888888888 6888887664 68899999998888774 46888899999999888 45554 677888899999999
Q ss_pred cCCccccccCccCCCCCCCCcc
Q 044195 672 SNVHSLEEMPKGFGKLTCLTTL 693 (1024)
Q Consensus 672 ~~~~~l~~~p~~i~~l~~L~~L 693 (1024)
++|. +..+|..+. ++|++|
T Consensus 110 ~~n~-l~~l~~~~~--~~L~~L 128 (332)
T 2ft3_A 110 SKNH-LVEIPPNLP--SSLVEL 128 (332)
T ss_dssp CSSC-CCSCCSSCC--TTCCEE
T ss_pred CCCc-CCccCcccc--ccCCEE
Confidence 8887 777776554 455555
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.77 E-value=1.8e-18 Score=189.18 Aligned_cols=216 Identities=19% Similarity=0.265 Sum_probs=158.2
Q ss_pred CCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcccEEeccCCccccccCccCCCCCCCCccC
Q 044195 615 NLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTLC 694 (1024)
Q Consensus 615 ~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~ 694 (1024)
...++++|+|++|.++.+|..+.++++|++|++++| .+..+|..++++++|++|++++|. +..+|..++++++|+.|.
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEE
Confidence 357899999999999999999999999999999998 667999999999999999999998 778888888888887774
Q ss_pred ceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHH
Q 044195 695 RFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRV 774 (1024)
Q Consensus 695 ~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~ 774 (1024)
...+... . .++..+. .. . .
T Consensus 157 L~~n~~~--------------~----------------~~p~~~~------~~-----~--------------------~ 175 (328)
T 4fcg_A 157 IRACPEL--------------T----------------ELPEPLA------ST-----D--------------------A 175 (328)
T ss_dssp EEEETTC--------------C----------------CCCSCSE------EE-----C---------------------
T ss_pred CCCCCCc--------------c----------------ccChhHh------hc-----c--------------------c
Confidence 3222110 0 0000010 00 0 0
Q ss_pred hhccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCCCCCCCCCCceeeecCCCCceEeccccccCC
Q 044195 775 LDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLPSVGQLPVLKHLEMRGMDRVKSVGLEFYGNS 854 (1024)
Q Consensus 775 ~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 854 (1024)
...+..+++|+.|++++|....+|.++.. +++|+.|++++|......+.++.+++|++|++++|.....++..+
T Consensus 176 ~~~~~~l~~L~~L~L~~n~l~~lp~~l~~--l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~---- 249 (328)
T 4fcg_A 176 SGEHQGLVNLQSLRLEWTGIRSLPASIAN--LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF---- 249 (328)
T ss_dssp CCCEEESTTCCEEEEEEECCCCCCGGGGG--CTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCT----
T ss_pred hhhhccCCCCCEEECcCCCcCcchHhhcC--CCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHh----
Confidence 12355678999999999999999988765 899999999999866544578889999999999988776655433
Q ss_pred CCCCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCcccCC
Q 044195 855 CSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLP 908 (1024)
Q Consensus 855 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp 908 (1024)
..+++|+.|++++++....+. ..+. . +++|+.|++++|+.+. .+|
T Consensus 250 --~~l~~L~~L~L~~n~~~~~~p-~~~~-~----l~~L~~L~L~~n~~~~-~iP 294 (328)
T 4fcg_A 250 --GGRAPLKRLILKDCSNLLTLP-LDIH-R----LTQLEKLDLRGCVNLS-RLP 294 (328)
T ss_dssp --TCCCCCCEEECTTCTTCCBCC-TTGG-G----CTTCCEEECTTCTTCC-CCC
T ss_pred --cCCCCCCEEECCCCCchhhcc-hhhh-c----CCCCCEEeCCCCCchh-hcc
Confidence 236777777777765444332 2222 2 6777777777774433 555
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.76 E-value=4.4e-18 Score=187.28 Aligned_cols=235 Identities=21% Similarity=0.258 Sum_probs=144.4
Q ss_pred CceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCcccc-CcccccCCC
Q 044195 564 QLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQIL-PQSINSLYN 641 (1024)
Q Consensus 564 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~ 641 (1024)
+++.+.+.++. +. ..+..+ .++|++|+|++| .+..++ ..+.++++|++|++++|.++.+ |..+.++++
T Consensus 34 ~l~~l~~~~~~------l~-~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 103 (332)
T 2ft3_A 34 HLRVVQCSDLG------LK-AVPKEI--SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103 (332)
T ss_dssp ETTEEECCSSC------CS-SCCSCC--CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTT
T ss_pred cCCEEECCCCC------cc-ccCCCC--CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCC
Confidence 67888877654 11 222222 368999999999 687775 6799999999999999999977 778999999
Q ss_pred CcEEecCCCccccccccccCCCCcccEEeccCCccccccCcc-CCCCCCCCccCceeeCCCC-CcccccccCcccCCCce
Q 044195 642 LHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKG-FGKLTCLTTLCRFVVGKDS-GSALRELKSLTNLQGTL 719 (1024)
Q Consensus 642 L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~-~~~~~~l~~L~~L~~~L 719 (1024)
|++|++++| .+..+|..+. ++|++|++++|. +..+|.. ++.+++|+.|....+.... +.....+..+ +|+ .+
T Consensus 104 L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~-~L 177 (332)
T 2ft3_A 104 LQKLYISKN-HLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN-YL 177 (332)
T ss_dssp CCEEECCSS-CCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS-CC
T ss_pred CCEEECCCC-cCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC-EE
Confidence 999999998 7788888776 899999999998 7777765 7888888888543332211 1112222222 333 33
Q ss_pred EeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCc
Q 044195 720 EISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPI 799 (1024)
Q Consensus 720 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~ 799 (1024)
.+...... .++..+ .++|++|++++|....+ ....+..+++|+.|++++|....++.
T Consensus 178 ~l~~n~l~-----~l~~~~--~~~L~~L~l~~n~i~~~----------------~~~~l~~l~~L~~L~L~~N~l~~~~~ 234 (332)
T 2ft3_A 178 RISEAKLT-----GIPKDL--PETLNELHLDHNKIQAI----------------ELEDLLRYSKLYRLGLGHNQIRMIEN 234 (332)
T ss_dssp BCCSSBCS-----SCCSSS--CSSCSCCBCCSSCCCCC----------------CTTSSTTCTTCSCCBCCSSCCCCCCT
T ss_pred ECcCCCCC-----ccCccc--cCCCCEEECCCCcCCcc----------------CHHHhcCCCCCCEEECCCCcCCcCCh
Confidence 33221110 111111 14555555555543111 11234455556666666555554443
Q ss_pred -ccCCCCCCCceEEEEecCCCCCCCC-CCCCCCCCceeeecCC
Q 044195 800 -WLGDFPFSKLVSLKFEYCGMCTSLP-SVGQLPVLKHLEMRGM 840 (1024)
Q Consensus 800 -~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~ 840 (1024)
++. .+++|+.|++++|... .+| .+..+++|+.|++++|
T Consensus 235 ~~~~--~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 235 GSLS--FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp TGGG--GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSS
T ss_pred hHhh--CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCC
Confidence 232 2555666666655433 333 4555556666666554
No 57
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=4.7e-19 Score=192.73 Aligned_cols=250 Identities=16% Similarity=0.175 Sum_probs=191.3
Q ss_pred CceEEEEeCCCCCcc---cCCccccCCCCCcEeeccC-CCcc-ccCcccccCCCCcEEecCCCccccccccccCCCCccc
Q 044195 593 PRLRVFSLCGYCNII---DLPNEIGNLKHLRFLNLSR-TNIQ-ILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLH 667 (1024)
Q Consensus 593 ~~L~~L~L~~~~~l~---~lp~~l~~l~~L~~L~L~~-~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~ 667 (1024)
.+++.|+|++| .+. .+|..++++++|++|++++ |.+. .+|..++++++|++|++++|.....+|..+.++++|+
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 68999999999 565 6899999999999999995 8877 7899999999999999999954458899999999999
Q ss_pred EEeccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCC-CCCc
Q 044195 668 HLRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKV-NLEA 746 (1024)
Q Consensus 668 ~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~-~L~~ 746 (1024)
+|++++|.....+|..++.+++|++|....+. + ...++..+..++ +|+.
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~---------------l---------------~~~~p~~l~~l~~~L~~ 178 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNR---------------I---------------SGAIPDSYGSFSKLFTS 178 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSC---------------C---------------EEECCGGGGCCCTTCCE
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCc---------------c---------------cCcCCHHHhhhhhcCcE
Confidence 99999998333788888888888888432110 0 011223345555 8899
Q ss_pred EEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCC-CCcccCCCCCCCceEEEEecCCCCCCCCC
Q 044195 747 LVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTK-FPIWLGDFPFSKLVSLKFEYCGMCTSLPS 825 (1024)
Q Consensus 747 L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~~~~~~~l~~ 825 (1024)
|++++|.... ..+..+..++ |+.|++++|.... .|..+.. +++|+.|++++|.....++.
T Consensus 179 L~L~~N~l~~----------------~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~ 239 (313)
T 1ogq_A 179 MTISRNRLTG----------------KIPPTFANLN-LAFVDLSRNMLEGDASVLFGS--DKNTQKIHLAKNSLAFDLGK 239 (313)
T ss_dssp EECCSSEEEE----------------ECCGGGGGCC-CSEEECCSSEEEECCGGGCCT--TSCCSEEECCSSEECCBGGG
T ss_pred EECcCCeeec----------------cCChHHhCCc-ccEEECcCCcccCcCCHHHhc--CCCCCEEECCCCceeeecCc
Confidence 9998876411 1123344444 9999999988754 4555554 89999999999987777778
Q ss_pred CCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCcc
Q 044195 826 VGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQG 905 (1024)
Q Consensus 826 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 905 (1024)
+..+++|++|++++|.....++..+ ..+++|+.|+++++ .+.+..+.. .. +++|+.|++++|+.+.|
T Consensus 240 ~~~l~~L~~L~Ls~N~l~~~~p~~l------~~l~~L~~L~Ls~N-~l~~~ip~~--~~----l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 240 VGLSKNLNGLDLRNNRIYGTLPQGL------TQLKFLHSLNVSFN-NLCGEIPQG--GN----LQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCCCTTCCEEECCSSCCEECCCGGG------GGCTTCCEEECCSS-EEEEECCCS--TT----GGGSCGGGTCSSSEEES
T ss_pred ccccCCCCEEECcCCcccCcCChHH------hcCcCCCEEECcCC-cccccCCCC--cc----ccccChHHhcCCCCccC
Confidence 8899999999999986554555443 23899999999985 455444432 33 89999999999988875
No 58
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=5.3e-21 Score=229.59 Aligned_cols=368 Identities=15% Similarity=0.138 Sum_probs=200.1
Q ss_pred cCCCCceEEecCCCCCCCCCchhhhhhhhhC-CCCceEEEEeCCCCCccc--CCccccCCCCCcEeeccCCCccc-----
Q 044195 560 RGVQQLRTFLPMKLSDYGGDYLAWSVLQLLL-DLPRLRVFSLCGYCNIID--LPNEIGNLKHLRFLNLSRTNIQI----- 631 (1024)
Q Consensus 560 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~L~~~~i~~----- 631 (1024)
..+++|+.|.+.++. ++...+..+. .+++|++|+|++|..+.. ++..+.++++|++|+|++|.++.
T Consensus 102 ~~~~~L~~L~L~~~~------~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMV------VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp HHCTTCCEEEEESCB------CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred HhCCCCCeEEeeCcE------EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence 357788888887764 5566666663 688999999998855544 55555678899999999887653
Q ss_pred cCcccccCCCCcEEecCCCc-cc--cccccccCCCCcccEEeccCCccccccCccCCCCCCCCccCceeeCC-CCC----
Q 044195 632 LPQSINSLYNLHTVLLEDCR-RL--KKLCKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGK-DSG---- 703 (1024)
Q Consensus 632 lp~~i~~L~~L~~L~l~~~~-~l--~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~-~~~---- 703 (1024)
++.....+++|++|++++|. .+ ..++.-+.++++|++|++++|..+..+|..+..+++|+.|....... ...
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 33334467799999999884 11 22333345678999999998865777777777888888874322111 000
Q ss_pred cccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCC
Q 044195 704 SALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQK 783 (1024)
Q Consensus 704 ~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 783 (1024)
.....+.++++|+ .+. .+.. .....++..+..+++|++|++++|... .......+..+++
T Consensus 256 ~l~~~l~~~~~L~-~Ls--~~~~--~~~~~l~~~~~~~~~L~~L~L~~~~l~---------------~~~l~~~~~~~~~ 315 (594)
T 2p1m_B 256 GLSVALSGCKELR-CLS--GFWD--AVPAYLPAVYSVCSRLTTLNLSYATVQ---------------SYDLVKLLCQCPK 315 (594)
T ss_dssp HHHHHHHTCTTCC-EEE--CCBT--CCGGGGGGGHHHHTTCCEEECTTCCCC---------------HHHHHHHHTTCTT
T ss_pred HHHHHHhcCCCcc-ccc--CCcc--cchhhHHHHHHhhCCCCEEEccCCCCC---------------HHHHHHHHhcCCC
Confidence 0111344445454 331 1111 112234444456778888888887641 2233344567788
Q ss_pred ccEEEEEecCCC-CCCcccCCCCCCCceEEEEecCC--------CCCC--CCCC-CCCCCCceeeecCCCCceEeccccc
Q 044195 784 LEELTITGYGGT-KFPIWLGDFPFSKLVSLKFEYCG--------MCTS--LPSV-GQLPVLKHLEMRGMDRVKSVGLEFY 851 (1024)
Q Consensus 784 L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~--------~~~~--l~~l-~~l~~L~~L~L~~~~~l~~~~~~~~ 851 (1024)
|+.|++.+|... .++.... .+++|+.|++.+|. .++. +..+ ..+++|+.|.+. |+.+...+....
T Consensus 316 L~~L~l~~~~~~~~l~~l~~--~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l 392 (594)
T 2p1m_B 316 LQRLWVLDYIEDAGLEVLAS--TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITI 392 (594)
T ss_dssp CCEEEEEGGGHHHHHHHHHH--HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHH
T ss_pred cCEEeCcCccCHHHHHHHHH--hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHH
Confidence 888888876211 1111111 26788888886542 1111 0011 235677777543 333332211111
Q ss_pred cCCCCCCCCCcceeecc-----ccccccccccc----cccccccccCcccceeeeccCcCCcccCC----CCCCCccEEE
Q 044195 852 GNSCSAPFPSLETLCFV-----NMQEWEEWIPR----GFAQEVNEVFPKLRKLSLLRCSKLQGTLP----ERLLLLEKLV 918 (1024)
Q Consensus 852 ~~~~~~~~~~L~~L~l~-----~~~~l~~~~~~----~~~~~~~~~~~~L~~L~l~~c~~L~~~lp----~~l~~L~~L~ 918 (1024)
. ..+++|+.|++. +|+++...... ..... +++|+.|++++ .+++..+ ..+++|+.|+
T Consensus 393 ~----~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~----~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~ 462 (594)
T 2p1m_B 393 A----RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH----CKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLS 462 (594)
T ss_dssp H----HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH----CTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEE
T ss_pred H----hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh----CCCccEEeecC--cccHHHHHHHHHhchhccEee
Confidence 0 125667777666 34444421110 00111 56666666644 3332111 1255666666
Q ss_pred EecccCcccc----CCCCCCcCEEEEccCCCcccc----CCCCCCCccEEEEcCCCC
Q 044195 919 IQSCKQLLVT----IQCLPALSELQIRGCRRVVFS----SPIDFSSLKSVFLGDIAN 967 (1024)
Q Consensus 919 l~~c~~l~~~----l~~l~~L~~L~l~~~~~l~~~----~~~~l~~L~~L~l~~c~~ 967 (1024)
+++|.....+ ...+++|++|++++|+. +.. ....+++|+.|++++|+.
T Consensus 463 L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 463 VAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred ccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 6666422111 13356666666666653 211 112355666666666654
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=3.3e-17 Score=192.94 Aligned_cols=79 Identities=20% Similarity=0.177 Sum_probs=65.3
Q ss_pred CceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcccEEecc
Q 044195 593 PRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNS 672 (1024)
Q Consensus 593 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~ 672 (1024)
++|++|+|++| .+..+|. .+++|++|+|++|.++.+|. .+++|++|++++| .+..+|. .+++|+.|+++
T Consensus 61 ~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECC
T ss_pred CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECC
Confidence 68899999988 6888886 57889999999999888887 6788999999988 7777776 67888999998
Q ss_pred CCccccccCcc
Q 044195 673 NVHSLEEMPKG 683 (1024)
Q Consensus 673 ~~~~l~~~p~~ 683 (1024)
+|. +..+|..
T Consensus 130 ~N~-l~~lp~~ 139 (622)
T 3g06_A 130 GNQ-LTSLPVL 139 (622)
T ss_dssp SSC-CSCCCCC
T ss_pred CCC-CCcCCCC
Confidence 887 7777653
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=3.8e-20 Score=214.48 Aligned_cols=355 Identities=18% Similarity=0.194 Sum_probs=192.8
Q ss_pred ccceeEEEEEccCCCCCcccccccCCCCceEEecCCCCCCCCCchhh----hhhhhhCCCCceEEEEeCCCCCcccC-Cc
Q 044195 537 SQSLRHFSYIRGECDGGTRFDFIRGVQQLRTFLPMKLSDYGGDYLAW----SVLQLLLDLPRLRVFSLCGYCNIIDL-PN 611 (1024)
Q Consensus 537 ~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~----~~~~~l~~l~~L~~L~L~~~~~l~~l-p~ 611 (1024)
+..++++.+..+..........+..+++|++|.+.++. +.. .....+..+++|++|+|++| .+... +.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~------l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~ 74 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG------LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVH 74 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC------CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC------CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHH
Confidence 34567777766543222222336678899999998875 333 23445678899999999999 56542 22
Q ss_pred cc-cCCC----CCcEeeccCCCcc-----ccCcccccCCCCcEEecCCCccccc-cccc-----cCCCCcccEEeccCCc
Q 044195 612 EI-GNLK----HLRFLNLSRTNIQ-----ILPQSINSLYNLHTVLLEDCRRLKK-LCKD-----MGNLTKLHHLRNSNVH 675 (1024)
Q Consensus 612 ~l-~~l~----~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~-lp~~-----i~~L~~L~~L~l~~~~ 675 (1024)
.+ ..+. +|++|+|++|.++ .+|..+..+++|++|++++|. +.. .+.. ....++|++|++++|.
T Consensus 75 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 75 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence 22 3454 7999999999988 468889999999999999984 432 2222 2236789999999997
Q ss_pred cccc-----cCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhc-CCCCCCCcEEE
Q 044195 676 SLEE-----MPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQL-NRKVNLEALVL 749 (1024)
Q Consensus 676 ~l~~-----~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l-~~~~~L~~L~l 749 (1024)
+.. ++..+..+++|++|....+. .....+. .+...+ ...++|++|++
T Consensus 154 -l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~-------------------------~l~~~l~~~~~~L~~L~L 206 (461)
T 1z7x_W 154 -LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVR-------------------------VLCQGLKDSPCQLEALKL 206 (461)
T ss_dssp -CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHH-------------------------HHHHHHHHSCCCCCEEEC
T ss_pred -CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHH-------------------------HHHHHHhcCCCCceEEEc
Confidence 543 34445556666666332211 0000000 011111 12346666666
Q ss_pred EecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCC------CcccCCCCCCCceEEEEecCCCCCC-
Q 044195 750 RWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKF------PIWLGDFPFSKLVSLKFEYCGMCTS- 822 (1024)
Q Consensus 750 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------p~~~~~~~l~~L~~L~L~~~~~~~~- 822 (1024)
++|.... .........+..+++|+.|++++|..... +.+.. .+++|++|++++|.....
T Consensus 207 ~~n~l~~------------~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~--~~~~L~~L~L~~n~l~~~~ 272 (461)
T 1z7x_W 207 ESCGVTS------------DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH--PSSRLRTLWIWECGITAKG 272 (461)
T ss_dssp TTSCCBT------------THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTS--TTCCCCEEECTTSCCCHHH
T ss_pred cCCCCcH------------HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhc--CCCCceEEECcCCCCCHHH
Confidence 6655411 00112233444556666666666654321 11111 256777777777753321
Q ss_pred ---CC-CCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccccccccccccccCcccceeeec
Q 044195 823 ---LP-SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLL 898 (1024)
Q Consensus 823 ---l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 898 (1024)
++ .+..+++|++|++++|. +...+............++|++|+++++. +.......+.. ....+++|+.|+++
T Consensus 273 ~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~-~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 273 CGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSS-VLAQNRFLLELQIS 349 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHH-HHHHCSSCCEEECC
T ss_pred HHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHH-HHhhCCCccEEEcc
Confidence 22 34456777777777764 22211111111001124678888887754 33221110000 00116889999998
Q ss_pred cCcCCcccCC--------CCCCCccEEEEeccc-------CccccCCCCCCcCEEEEccCC
Q 044195 899 RCSKLQGTLP--------ERLLLLEKLVIQSCK-------QLLVTIQCLPALSELQIRGCR 944 (1024)
Q Consensus 899 ~c~~L~~~lp--------~~l~~L~~L~l~~c~-------~l~~~l~~l~~L~~L~l~~~~ 944 (1024)
+| .+++..+ ...++|+.|++++|. .++..+..+++|++|++++|+
T Consensus 350 ~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 350 NN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp SS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 88 5553211 113455555555553 123334445555555555554
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=3.9e-17 Score=177.57 Aligned_cols=98 Identities=22% Similarity=0.236 Sum_probs=58.9
Q ss_pred CceEEEEeCCCCCcccCCcc-ccCCCCCcEeeccCCCcccc---CcccccCCCCcEEecCCCccccccccccCCCCcccE
Q 044195 593 PRLRVFSLCGYCNIIDLPNE-IGNLKHLRFLNLSRTNIQIL---PQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHH 668 (1024)
Q Consensus 593 ~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 668 (1024)
++|++|+|++| .+..+|.. +.++++|++|+|++|.++.+ |..+..+++|++|++++| .+..+|..+..+++|++
T Consensus 28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCE
Confidence 46666677666 56666643 46666777777766666543 455556666777777666 55566666666667777
Q ss_pred EeccCCccccccCc--cCCCCCCCCcc
Q 044195 669 LRNSNVHSLEEMPK--GFGKLTCLTTL 693 (1024)
Q Consensus 669 L~l~~~~~l~~~p~--~i~~l~~L~~L 693 (1024)
|++++|. +..++. .+..+++|+.|
T Consensus 106 L~l~~n~-l~~~~~~~~~~~l~~L~~L 131 (306)
T 2z66_A 106 LDFQHSN-LKQMSEFSVFLSLRNLIYL 131 (306)
T ss_dssp EECTTSE-EESSTTTTTTTTCTTCCEE
T ss_pred EECCCCc-ccccccchhhhhccCCCEE
Confidence 7766665 544442 23444444433
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=6.2e-17 Score=175.96 Aligned_cols=223 Identities=17% Similarity=0.135 Sum_probs=154.7
Q ss_pred CCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccC---CccccCCCCCcEeeccCCCccccCcccccC
Q 044195 563 QQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDL---PNEIGNLKHLRFLNLSRTNIQILPQSINSL 639 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l---p~~l~~l~~L~~L~L~~~~i~~lp~~i~~L 639 (1024)
++++.|.+.++. +.......|.++++|++|+|++| .+..+ |..+..+++|++|++++|.+..+|..+..+
T Consensus 28 ~~l~~L~L~~n~------l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l 100 (306)
T 2z66_A 28 SSATRLELESNK------LQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 100 (306)
T ss_dssp TTCCEEECCSSC------CCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred CCCCEEECCCCc------cCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCccccChhhcCCC
Confidence 578888888765 33222233588999999999999 67654 566778999999999999999999999999
Q ss_pred CCCcEEecCCCcccccccc--ccCCCCcccEEeccCCccccc-cCccCCCCCCCCccCceeeCCCCCcccccccCcccCC
Q 044195 640 YNLHTVLLEDCRRLKKLCK--DMGNLTKLHHLRNSNVHSLEE-MPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQ 716 (1024)
Q Consensus 640 ~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~-~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 716 (1024)
++|++|++++| .+..+|. .+..+++|++|++++|. +.. .|..++.+++|+.|....+. +
T Consensus 101 ~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~---------------l- 162 (306)
T 2z66_A 101 EQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNS---------------F- 162 (306)
T ss_dssp TTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCE---------------E-
T ss_pred CCCCEEECCCC-cccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCc---------------c-
Confidence 99999999998 6666664 68899999999999998 544 44446667777666321110 0
Q ss_pred CceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCC
Q 044195 717 GTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTK 796 (1024)
Q Consensus 717 ~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 796 (1024)
.....+..+..+++|+.|++++|....+ ....+..+++|+.|++++|....
T Consensus 163 -------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 163 -------------QENFLPDIFTELRNLTFLDLSQCQLEQL----------------SPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp -------------GGGEECSCCTTCTTCCEEECTTSCCCEE----------------CTTTTTTCTTCCEEECTTSCCSB
T ss_pred -------------ccccchhHHhhCcCCCEEECCCCCcCCc----------------CHHHhcCCCCCCEEECCCCccCc
Confidence 0011223455667788888877765211 12345566778888887777766
Q ss_pred CCc-ccCCCCCCCceEEEEecCCCCCCCC-CCCCCC-CCceeeecCCC
Q 044195 797 FPI-WLGDFPFSKLVSLKFEYCGMCTSLP-SVGQLP-VLKHLEMRGMD 841 (1024)
Q Consensus 797 ~p~-~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~-~L~~L~L~~~~ 841 (1024)
++. .+. .+++|+.|++++|......+ .+..+| +|++|++++|+
T Consensus 214 ~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 214 LDTFPYK--CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCSGGGT--TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cChhhcc--CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 654 233 36778888888877655444 556664 77888887764
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=8.7e-17 Score=178.60 Aligned_cols=98 Identities=22% Similarity=0.263 Sum_probs=64.3
Q ss_pred CceEEEEeCCCCCcccCCc-cccCCCCCcEeeccCCCccccC-cccccCCCCcEEecCCCccccccccc-cCCCCcccEE
Q 044195 593 PRLRVFSLCGYCNIIDLPN-EIGNLKHLRFLNLSRTNIQILP-QSINSLYNLHTVLLEDCRRLKKLCKD-MGNLTKLHHL 669 (1024)
Q Consensus 593 ~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L 669 (1024)
++|++|+|++| .+..+|. .+.++++|++|++++|.++.++ ..+.++++|++|++++| .+..+|.. ++++++|++|
T Consensus 52 ~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEE
Confidence 46777777777 5666654 5677777777777777776553 45677777777777776 55556554 6677777777
Q ss_pred eccCCccccccCc--cCCCCCCCCcc
Q 044195 670 RNSNVHSLEEMPK--GFGKLTCLTTL 693 (1024)
Q Consensus 670 ~l~~~~~l~~~p~--~i~~l~~L~~L 693 (1024)
++++|. +..+|. .++.+++|+.|
T Consensus 130 ~L~~n~-l~~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 130 NLLGNP-YKTLGETSLFSHLTKLQIL 154 (353)
T ss_dssp ECTTCC-CSSSCSSCSCTTCTTCCEE
T ss_pred ECCCCC-CcccCchhhhccCCCCcEE
Confidence 777776 556654 35555555555
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=177.75 Aligned_cols=125 Identities=23% Similarity=0.262 Sum_probs=104.1
Q ss_pred CCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCccccCcc-cccCC
Q 044195 563 QQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQILPQS-INSLY 640 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~~-i~~L~ 640 (1024)
++|+.|.+.++. +.......+.++++|++|+|++| .+..++ ..++++++|++|++++|.++.+|.. +.+++
T Consensus 52 ~~L~~L~l~~n~------i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLSNNR------ITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS 124 (353)
T ss_dssp TTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT
T ss_pred ccCcEEECCCCc------CcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc
Confidence 589999998875 43433446789999999999999 687764 6799999999999999999999877 89999
Q ss_pred CCcEEecCCCcccccccc--ccCCCCcccEEeccCCccccccC-ccCCCCCCCCccCc
Q 044195 641 NLHTVLLEDCRRLKKLCK--DMGNLTKLHHLRNSNVHSLEEMP-KGFGKLTCLTTLCR 695 (1024)
Q Consensus 641 ~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p-~~i~~l~~L~~L~~ 695 (1024)
+|++|++++| .+..+|. .+.++++|++|++++|..+..++ ..++.+++|+.|..
T Consensus 125 ~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 125 SLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp TCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred cCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence 9999999998 7778886 68999999999999995466664 45777777777743
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=4e-17 Score=178.06 Aligned_cols=269 Identities=14% Similarity=0.104 Sum_probs=176.4
Q ss_pred hhhCCCCceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCc
Q 044195 587 QLLLDLPRLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTK 665 (1024)
Q Consensus 587 ~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~ 665 (1024)
..+..+++|++|+|++| .+..++ ..+.++++|++|+|++|.++..++ +..+++|++|++++| .+..+| .+++
T Consensus 28 ~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~----~~~~ 100 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL----VGPS 100 (317)
T ss_dssp HHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEE----ECTT
T ss_pred HHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccccc----CCCC
Confidence 33477889999999999 677765 678999999999999999987765 889999999999998 666665 3489
Q ss_pred ccEEeccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCC
Q 044195 666 LHHLRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLE 745 (1024)
Q Consensus 666 L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~ 745 (1024)
|++|++++|. +..++.. .+++|+.|....+.. . ...+..+..+++|+
T Consensus 101 L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l-~-----------------------------~~~~~~~~~l~~L~ 147 (317)
T 3o53_A 101 IETLHAANNN-ISRVSCS--RGQGKKNIYLANNKI-T-----------------------------MLRDLDEGCRSRVQ 147 (317)
T ss_dssp CCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCC-C-----------------------------SGGGBCTGGGSSEE
T ss_pred cCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCC-C-----------------------------CccchhhhccCCCC
Confidence 9999999988 6666543 245555552211100 0 00111234456777
Q ss_pred cEEEEecCCCCccccccccccchhhHHHHhhcc-CCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCC
Q 044195 746 ALVLRWCNRSCISNIRNEDAVDLETQTRVLDML-KPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLP 824 (1024)
Q Consensus 746 ~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~ 824 (1024)
.|++++|....+ .+..+ ..+++|+.|++++|....+|.... +++|+.|++++|......+
T Consensus 148 ~L~Ls~N~l~~~----------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---l~~L~~L~Ls~N~l~~l~~ 208 (317)
T 3o53_A 148 YLDLKLNEIDTV----------------NFAELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMGP 208 (317)
T ss_dssp EEECTTSCCCEE----------------EGGGGGGGTTTCCEEECTTSCCCEEECCCC---CTTCCEEECCSSCCCEECG
T ss_pred EEECCCCCCCcc----------------cHHHHhhccCcCCEEECCCCcCcccccccc---cccCCEEECCCCcCCcchh
Confidence 777777765211 01222 245778888888887776654432 6788888888887554444
Q ss_pred CCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCc
Q 044195 825 SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQ 904 (1024)
Q Consensus 825 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 904 (1024)
.+..+++|+.|++++| .++.++..+ ..+++|+.|++++++-.....+..+. . +++|+.|++.+|+.++
T Consensus 209 ~~~~l~~L~~L~L~~N-~l~~l~~~~------~~l~~L~~L~l~~N~~~~~~~~~~~~-~----~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 209 EFQSAAGVTWISLRNN-KLVLIEKAL------RFSQNLEHFDLRGNGFHCGTLRDFFS-K----NQRVQTVAKQTVKKLT 276 (317)
T ss_dssp GGGGGTTCSEEECTTS-CCCEECTTC------CCCTTCCEEECTTCCCBHHHHHHHHH-T----CHHHHHHHHHHHHHHH
T ss_pred hhcccCcccEEECcCC-cccchhhHh------hcCCCCCEEEccCCCccCcCHHHHHh-c----cccceEEECCCchhcc
Confidence 6777888888888886 444555433 23788888888875432122222222 2 7889999998888888
Q ss_pred ccCCCCCCCccEEE--EecccCcc
Q 044195 905 GTLPERLLLLEKLV--IQSCKQLL 926 (1024)
Q Consensus 905 ~~lp~~l~~L~~L~--l~~c~~l~ 926 (1024)
+..|..+....... -.+|..++
T Consensus 277 ~~~~~~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 277 GQNEEECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp SSSSCCCSSTTCEEETTEEEBCCT
T ss_pred CCchhccCCCceecccceeeccCC
Confidence 76665443333333 34465554
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=4.4e-16 Score=179.18 Aligned_cols=219 Identities=25% Similarity=0.286 Sum_probs=136.9
Q ss_pred CceEEEEeCCCCCcccC-CccccCCCCCcEeeccCCCccccC-cccccCCCCcEEecCCCccccccccc-cCCCCcccEE
Q 044195 593 PRLRVFSLCGYCNIIDL-PNEIGNLKHLRFLNLSRTNIQILP-QSINSLYNLHTVLLEDCRRLKKLCKD-MGNLTKLHHL 669 (1024)
Q Consensus 593 ~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L 669 (1024)
++|++|+|++| .+..+ |..+.++++|++|+|++|.++.++ ..+.++++|++|++++| .+..+|.. +..+++|++|
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEE
Confidence 57889999998 67666 577888999999999999988765 66888999999999998 66677654 7889999999
Q ss_pred eccCCccccccCc-cCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEE
Q 044195 670 RNSNVHSLEEMPK-GFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALV 748 (1024)
Q Consensus 670 ~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 748 (1024)
++++|. +..+|. .+.++++|+.|....++...... ...+..+++|+.|+
T Consensus 153 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-----------------------------~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 153 WLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYIS-----------------------------EGAFEGLFNLKYLN 202 (452)
T ss_dssp ECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEEC-----------------------------TTTTTTCTTCCEEE
T ss_pred ECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccC-----------------------------hhhccCCCCCCEEE
Confidence 999988 777765 46777777777432211111000 11234455666666
Q ss_pred EEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCC-CcccCCCCCCCceEEEEecCCCCCCCC-CC
Q 044195 749 LRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKF-PIWLGDFPFSKLVSLKFEYCGMCTSLP-SV 826 (1024)
Q Consensus 749 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l 826 (1024)
+++|.... .+.+..+++|+.|++++|.+..+ |..+.. +++|+.|++++|......+ .+
T Consensus 203 L~~n~l~~------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~ 262 (452)
T 3zyi_A 203 LGMCNIKD------------------MPNLTPLVGLEELEMSGNHFPEIRPGSFHG--LSSLKKLWVMNSQVSLIERNAF 262 (452)
T ss_dssp CTTSCCSS------------------CCCCTTCTTCCEEECTTSCCSEECGGGGTT--CTTCCEEECTTSCCCEECTTTT
T ss_pred CCCCcccc------------------cccccccccccEEECcCCcCcccCcccccC--ccCCCEEEeCCCcCceECHHHh
Confidence 66655421 12244556666666666665544 233332 5666666666665443323 45
Q ss_pred CCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccc
Q 044195 827 GQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVN 869 (1024)
Q Consensus 827 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 869 (1024)
..+++|+.|+|++| .+..++...+. .+++|+.|++++
T Consensus 263 ~~l~~L~~L~L~~N-~l~~~~~~~~~-----~l~~L~~L~L~~ 299 (452)
T 3zyi_A 263 DGLASLVELNLAHN-NLSSLPHDLFT-----PLRYLVELHLHH 299 (452)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTSST-----TCTTCCEEECCS
T ss_pred cCCCCCCEEECCCC-cCCccChHHhc-----cccCCCEEEccC
Confidence 56666666666665 23333332221 255666666655
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=3.4e-16 Score=180.07 Aligned_cols=221 Identities=17% Similarity=0.188 Sum_probs=167.6
Q ss_pred CCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCccccCcc-cccCC
Q 044195 563 QQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQILPQS-INSLY 640 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~~-i~~L~ 640 (1024)
++++.|.+.++. +....+..|.++++|++|+|++| .+..++ ..+.++++|++|+|++|.++.+|.. +..++
T Consensus 75 ~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 147 (452)
T 3zyi_A 75 SNTRYLNLMENN------IQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147 (452)
T ss_dssp TTCSEEECCSSC------CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCT
T ss_pred CCccEEECcCCc------CceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCccChhhhcccC
Confidence 689999998875 44555667899999999999999 677765 7789999999999999999988765 88899
Q ss_pred CCcEEecCCCcccccccc-ccCCCCcccEEeccCCccccccCcc-CCCCCCCCccCceeeCCCCCcccccccCcccCCCc
Q 044195 641 NLHTVLLEDCRRLKKLCK-DMGNLTKLHHLRNSNVHSLEEMPKG-FGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGT 718 (1024)
Q Consensus 641 ~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 718 (1024)
+|++|++++| .+..+|. .+.++++|++|++++|..+..++.. +..+++|+.|....+. +.
T Consensus 148 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~---------------l~-- 209 (452)
T 3zyi_A 148 KLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN---------------IK-- 209 (452)
T ss_dssp TCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC---------------CS--
T ss_pred CCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc---------------cc--
Confidence 9999999999 6777765 6899999999999997778888764 7777777777332111 00
Q ss_pred eEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCC
Q 044195 719 LEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFP 798 (1024)
Q Consensus 719 L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p 798 (1024)
. + ..+..+++|+.|++++|....+ ....+..+++|+.|++++|....++
T Consensus 210 -------~-------~-~~~~~l~~L~~L~Ls~N~l~~~----------------~~~~~~~l~~L~~L~L~~n~l~~~~ 258 (452)
T 3zyi_A 210 -------D-------M-PNLTPLVGLEELEMSGNHFPEI----------------RPGSFHGLSSLKKLWVMNSQVSLIE 258 (452)
T ss_dssp -------S-------C-CCCTTCTTCCEEECTTSCCSEE----------------CGGGGTTCTTCCEEECTTSCCCEEC
T ss_pred -------c-------c-ccccccccccEEECcCCcCccc----------------CcccccCccCCCEEEeCCCcCceEC
Confidence 0 0 0144567788888888775221 1345677888999999888876654
Q ss_pred -cccCCCCCCCceEEEEecCCCCCCCC-CCCCCCCCceeeecCCC
Q 044195 799 -IWLGDFPFSKLVSLKFEYCGMCTSLP-SVGQLPVLKHLEMRGMD 841 (1024)
Q Consensus 799 -~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 841 (1024)
..+. .+++|+.|+|++|......+ .+..+++|+.|+|++|+
T Consensus 259 ~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 259 RNAFD--GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTTT--TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred HHHhc--CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 3343 37899999999987544333 46788999999998875
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.65 E-value=7.9e-16 Score=176.32 Aligned_cols=219 Identities=25% Similarity=0.314 Sum_probs=131.0
Q ss_pred CceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCccccC-cccccCCCCcEEecCCCcccccccc-ccCCCCcccEE
Q 044195 593 PRLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQILP-QSINSLYNLHTVLLEDCRRLKKLCK-DMGNLTKLHHL 669 (1024)
Q Consensus 593 ~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L 669 (1024)
+++++|+|++| .+..++ ..+.++++|++|+|++|.++.++ ..+.++++|++|++++| .+..+|. .+..+++|++|
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCcee
Confidence 56788888888 566664 66788888888888888887665 56778888888888887 6666665 47788888888
Q ss_pred eccCCccccccCc-cCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEE
Q 044195 670 RNSNVHSLEEMPK-GFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALV 748 (1024)
Q Consensus 670 ~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 748 (1024)
++++|. +..+|. .+.++++|+.|....++.... .....+..+++|+.|+
T Consensus 142 ~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~-----------------------------i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 142 WLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSY-----------------------------ISEGAFEGLSNLRYLN 191 (440)
T ss_dssp ECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCE-----------------------------ECTTTTTTCSSCCEEE
T ss_pred eCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcce-----------------------------eCcchhhcccccCeec
Confidence 888887 666654 366666666663221111000 0011244556666666
Q ss_pred EEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCC-CcccCCCCCCCceEEEEecCCCCCCCC-CC
Q 044195 749 LRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKF-PIWLGDFPFSKLVSLKFEYCGMCTSLP-SV 826 (1024)
Q Consensus 749 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l 826 (1024)
+++|.... ++.+..+++|+.|++++|.+..+ |..+.. +++|+.|++++|......+ .+
T Consensus 192 L~~n~l~~------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~ 251 (440)
T 3zyj_A 192 LAMCNLRE------------------IPNLTPLIKLDELDLSGNHLSAIRPGSFQG--LMHLQKLWMIQSQIQVIERNAF 251 (440)
T ss_dssp CTTSCCSS------------------CCCCTTCSSCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCcCcc------------------ccccCCCcccCEEECCCCccCccChhhhcc--CccCCEEECCCCceeEEChhhh
Confidence 66665421 12245556666666666665544 233332 5666666666665433322 45
Q ss_pred CCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccc
Q 044195 827 GQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVN 869 (1024)
Q Consensus 827 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 869 (1024)
..+++|+.|+|++|. ++.++...+. .+++|+.|++++
T Consensus 252 ~~l~~L~~L~L~~N~-l~~~~~~~~~-----~l~~L~~L~L~~ 288 (440)
T 3zyj_A 252 DNLQSLVEINLAHNN-LTLLPHDLFT-----PLHHLERIHLHH 288 (440)
T ss_dssp TTCTTCCEEECTTSC-CCCCCTTTTS-----SCTTCCEEECCS
T ss_pred cCCCCCCEEECCCCC-CCccChhHhc-----cccCCCEEEcCC
Confidence 566666666666652 3333332222 255666666655
No 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.65 E-value=4.2e-16 Score=178.61 Aligned_cols=221 Identities=16% Similarity=0.190 Sum_probs=168.4
Q ss_pred CCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCccccCc-ccccCC
Q 044195 563 QQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQILPQ-SINSLY 640 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~-~i~~L~ 640 (1024)
++++.|.+.++. +.......|.++++|++|+|++| .+..++ ..+.++++|++|+|++|.++.+|. .+..++
T Consensus 64 ~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 136 (440)
T 3zyj_A 64 TNTRLLNLHENQ------IQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136 (440)
T ss_dssp TTCSEEECCSCC------CCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCS
T ss_pred CCCcEEEccCCc------CCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccc
Confidence 678999988775 44445567899999999999999 687776 778999999999999999999876 589999
Q ss_pred CCcEEecCCCcccccccc-ccCCCCcccEEeccCCccccccCcc-CCCCCCCCccCceeeCCCCCcccccccCcccCCCc
Q 044195 641 NLHTVLLEDCRRLKKLCK-DMGNLTKLHHLRNSNVHSLEEMPKG-FGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGT 718 (1024)
Q Consensus 641 ~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 718 (1024)
+|++|++++| .+..+|. .+.++++|++|++++|..+..++.. +..+++|+.|....+. +.
T Consensus 137 ~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~---------------l~-- 198 (440)
T 3zyj_A 137 KLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN---------------LR-- 198 (440)
T ss_dssp SCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC---------------CS--
T ss_pred cCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc---------------Cc--
Confidence 9999999998 6767765 6899999999999997768877763 7777777777332111 00
Q ss_pred eEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCC
Q 044195 719 LEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFP 798 (1024)
Q Consensus 719 L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p 798 (1024)
. ++ .+..+++|+.|++++|....+ ....+..+++|+.|++++|....++
T Consensus 199 -------~-------~~-~~~~l~~L~~L~Ls~N~l~~~----------------~~~~~~~l~~L~~L~L~~n~l~~~~ 247 (440)
T 3zyj_A 199 -------E-------IP-NLTPLIKLDELDLSGNHLSAI----------------RPGSFQGLMHLQKLWMIQSQIQVIE 247 (440)
T ss_dssp -------S-------CC-CCTTCSSCCEEECTTSCCCEE----------------CTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred -------c-------cc-ccCCCcccCEEECCCCccCcc----------------ChhhhccCccCCEEECCCCceeEEC
Confidence 0 00 145567888888888765221 1345677888999999888877665
Q ss_pred cc-cCCCCCCCceEEEEecCCCCCCCC-CCCCCCCCceeeecCCC
Q 044195 799 IW-LGDFPFSKLVSLKFEYCGMCTSLP-SVGQLPVLKHLEMRGMD 841 (1024)
Q Consensus 799 ~~-~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 841 (1024)
.. +. .+++|+.|+|++|......+ .+..+++|+.|+|++|+
T Consensus 248 ~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 248 RNAFD--NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTSST--TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred hhhhc--CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 43 33 37899999999997554333 46788999999999875
No 70
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.64 E-value=6.7e-15 Score=163.44 Aligned_cols=291 Identities=15% Similarity=0.163 Sum_probs=179.6
Q ss_pred ccCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCC------CH
Q 044195 179 NEAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDF------NV 252 (1024)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~------~~ 252 (1024)
.+..|+||+++++++.+++... +++.|+|++|+|||||++++++. . ..+|+++.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~--~-----~~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNE--R-----PGILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHH--S-----SEEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHH--c-----CcEEEEeecccccccCCCH
Confidence 4456999999999999998641 58999999999999999999873 2 26788765432 55
Q ss_pred HHHHHHHHHhccC-----------------CCC-CCCcHHHHHHHHHHHhCC-CceeEEeeccCCCC-------HHHHHH
Q 044195 253 FRVTKSILKSITN-----------------DQS-KDDDLNWVQEKLKKQLSG-KKFLLVLDDVWNEN-------YEYWSI 306 (1024)
Q Consensus 253 ~~~~~~il~~l~~-----------------~~~-~~~~~~~~~~~l~~~l~~-~~~LlVlDd~~~~~-------~~~~~~ 306 (1024)
..+++.+...+.. ... ...+...+...+.+..+. ++++|||||++.-. ...+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 5666666655432 000 123455566666655542 39999999996632 223333
Q ss_pred hhcCCCCCCCCcEEEEEcCCchhhhc----------c-CC-ccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHH
Q 044195 307 FSRPFGAGAPGSKIVVTTRNLRVTVN----------M-GA-DQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGE 374 (1024)
Q Consensus 307 l~~~~~~~~~gs~ilvTtR~~~~~~~----------~-~~-~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~ 374 (1024)
+...... ..+.++|+|++....... . +. ...+.+.+|+.+|+.+++......... .. ..+.+.
T Consensus 155 L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~---~~~~~~ 229 (350)
T 2qen_A 155 FAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DV---PENEIE 229 (350)
T ss_dssp HHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CC---CHHHHH
T ss_pred HHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHH
Confidence 3322211 246789999887542111 1 11 247899999999999999875321111 11 135678
Q ss_pred HHHHHcCCChHHHHHHHhhhcCCCChhHHHH-HHhccccCCCCCCCChhhHHHhhhcCC---ChhHHHHHhhhccCCCCc
Q 044195 375 KIVMKCKGLPLAAKTLGGLLRGKHDPRDWEF-VLNNDICNLPEENCNIIPALGVSCHFL---PPQLKQCFAYCSLFPKGY 450 (1024)
Q Consensus 375 ~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~-~l~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~k~cfl~~~~fp~~~ 450 (1024)
.|++.++|+|+++..++..+....+...+.. ..+. +...+.-.+..+ ++..+..+..+|. +
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~l~~~~~~~~~~l~~la~---g- 294 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV-----------AKGLIMGELEELRRRSPRYVDILRAIAL---G- 294 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH-----------HHHHHHHHHHHHHhCChhHHHHHHHHHh---C-
Confidence 8999999999999999876432112222211 1110 111122222233 7788999998887 2
Q ss_pred eeCHHHHHHHHHhcCCcccCCCCccHHHHHHHHHHHHHhcCCccccCCCCCcEEE-chhHHHHHH
Q 044195 451 EFQEEEIISLWAAEGFLHQENSGRKMEDLGREFVQELLSRSFFQRSSKNASRFLM-HDLINDLAR 514 (1024)
Q Consensus 451 ~i~~~~li~~w~~~gli~~~~~~~~~~~~~~~~~~~Lv~~~l~~~~~~~~~~~~~-Hdli~~~~~ 514 (1024)
.++...+........ ++.. ...+..+++.|++.+++.... ..|.+ |++++++.+
T Consensus 295 ~~~~~~l~~~~~~~~------~~~~-~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 295 YNRWSLIRDYLAVKG------TKIP-EPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp CCSHHHHHHHHHHTT------CCCC-HHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 245555555443211 0111 344678899999999998753 45655 777877653
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=2.5e-17 Score=179.73 Aligned_cols=260 Identities=14% Similarity=0.101 Sum_probs=184.6
Q ss_pred CceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCccccC-cccccCCCCcEEecCCCccccccccccCCCCcccEEe
Q 044195 593 PRLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQILP-QSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLR 670 (1024)
Q Consensus 593 ~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 670 (1024)
..++.++++.+ .+...+ ..+..+++|++|+|++|.++.++ ..+.++++|++|++++| .+...+. +..+++|++|+
T Consensus 10 ~~l~i~~ls~~-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~ 86 (317)
T 3o53_A 10 NRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLD 86 (317)
T ss_dssp TEEEEESCCTT-THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEE
T ss_pred CceeEeecccc-chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEE
Confidence 45777788877 565554 33466789999999999999876 57999999999999999 5665554 99999999999
Q ss_pred ccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEE
Q 044195 671 NSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLR 750 (1024)
Q Consensus 671 l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 750 (1024)
+++|. +..+|. .++|+.|....+ .+. .+. ...+++|+.|+++
T Consensus 87 Ls~n~-l~~l~~----~~~L~~L~l~~n---------------~l~-~~~-----------------~~~~~~L~~L~l~ 128 (317)
T 3o53_A 87 LNNNY-VQELLV----GPSIETLHAANN---------------NIS-RVS-----------------CSRGQGKKNIYLA 128 (317)
T ss_dssp CCSSE-EEEEEE----CTTCCEEECCSS---------------CCS-EEE-----------------ECCCSSCEEEECC
T ss_pred CcCCc-cccccC----CCCcCEEECCCC---------------ccC-CcC-----------------ccccCCCCEEECC
Confidence 99998 776653 356666532111 011 000 1224679999999
Q ss_pred ecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCc-ccCCCCCCCceEEEEecCCCCCCCCCCCCC
Q 044195 751 WCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPI-WLGDFPFSKLVSLKFEYCGMCTSLPSVGQL 829 (1024)
Q Consensus 751 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l 829 (1024)
+|....+ ....+..+++|+.|++++|....++. .+. ..+++|+.|++++|.. +.++....+
T Consensus 129 ~N~l~~~----------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~L~~N~l-~~~~~~~~l 190 (317)
T 3o53_A 129 NNKITML----------------RDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFI-YDVKGQVVF 190 (317)
T ss_dssp SSCCCSG----------------GGBCTGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCC-CEEECCCCC
T ss_pred CCCCCCc----------------cchhhhccCCCCEEECCCCCCCcccHHHHh-hccCcCCEEECCCCcC-ccccccccc
Confidence 9886321 12345667899999999998876543 332 1378999999999974 444656679
Q ss_pred CCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCcccCC-
Q 044195 830 PVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLP- 908 (1024)
Q Consensus 830 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp- 908 (1024)
++|++|++++|. +..++..+. .+++|+.|+++++ .+..+. ..+ .. +++|+.|++++|+...+.+|
T Consensus 191 ~~L~~L~Ls~N~-l~~l~~~~~------~l~~L~~L~L~~N-~l~~l~-~~~-~~----l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 191 AKLKTLDLSSNK-LAFMGPEFQ------SAAGVTWISLRNN-KLVLIE-KAL-RF----SQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp TTCCEEECCSSC-CCEECGGGG------GGTTCSEEECTTS-CCCEEC-TTC-CC----CTTCCEEECTTCCCBHHHHHH
T ss_pred ccCCEEECCCCc-CCcchhhhc------ccCcccEEECcCC-cccchh-hHh-hc----CCCCCEEEccCCCccCcCHHH
Confidence 999999999874 555655432 3899999999985 455432 222 22 79999999999954423444
Q ss_pred --CCCCCccEEEEecccCc
Q 044195 909 --ERLLLLEKLVIQSCKQL 925 (1024)
Q Consensus 909 --~~l~~L~~L~l~~c~~l 925 (1024)
..+++|+.|++.+|..+
T Consensus 257 ~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 257 FFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp HHHTCHHHHHHHHHHHHHH
T ss_pred HHhccccceEEECCCchhc
Confidence 46778888888877654
No 72
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.62 E-value=3.5e-15 Score=169.78 Aligned_cols=314 Identities=13% Similarity=0.027 Sum_probs=185.4
Q ss_pred CccccchhhHHHHHHHH-HhCCCCCCCCeEEEEE--EecCCCcHHHHHHHHhcChhhh---ccCC-ceEEEEecCCCCHH
Q 044195 181 AKVYGREKDKEAIVELL-LRDGLRADDGFSVFSI--NGMGGVGKTTLAQLVYNDDRVQ---RRFQ-IKAWTFVSEDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vv~I--~G~~GiGKTtLa~~~~~~~~~~---~~f~-~~~wv~~~~~~~~~ 253 (1024)
..|+||+++++++.+++ ...........+.+.| +|++|+||||||+++++..... ..+. .++|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56999999999999998 5321100023456777 9999999999999999742211 0122 35788877778888
Q ss_pred HHHHHHHHhccCCCCC-CCcHHHHHHHHHHHhC--CCceeEEeeccCCC------CHHHHHHhhcCCCCC---C--CCcE
Q 044195 254 RVTKSILKSITNDQSK-DDDLNWVQEKLKKQLS--GKKFLLVLDDVWNE------NYEYWSIFSRPFGAG---A--PGSK 319 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l~--~~~~LlVlDd~~~~------~~~~~~~l~~~~~~~---~--~gs~ 319 (1024)
.++..++.+++..... ..+...+...+.+.+. +++++|||||+|.- ....+..+...+... . .+..
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 9999999988764332 2334555666666664 68999999999652 223444333332211 2 3455
Q ss_pred EEEEcCCchhhhcc--------C-CccceecCCCChHhHHHHHHhhh---cCCCCCCCCccHHHHHHHHHHHcC------
Q 044195 320 IVVTTRNLRVTVNM--------G-ADQAYQLKELSNDDCLCLLTQIS---LGTGDFNIHPSLKEVGEKIVMKCK------ 381 (1024)
Q Consensus 320 ilvTtR~~~~~~~~--------~-~~~~~~l~~L~~~ea~~lf~~~a---~~~~~~~~~~~~~~~~~~i~~~~~------ 381 (1024)
||+||+...+...+ . -...+.+++++.++++++|...+ +... . ...+.+..|++.++
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~---~~~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--V---WEPRHLELISDVYGEDKGGD 256 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--S---CCHHHHHHHHHHHCGGGTSC
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--C---CChHHHHHHHHHHHHhccCC
Confidence 88888755432111 1 11239999999999999997643 2211 1 12367788999999
Q ss_pred CChHHHHHHHhhh------cCC--CChhHHHHHHhccccCCCCCCCChhhHHHhhhcCCChhHHHHHhhhccCC--CCce
Q 044195 382 GLPLAAKTLGGLL------RGK--HDPRDWEFVLNNDICNLPEENCNIIPALGVSCHFLPPQLKQCFAYCSLFP--KGYE 451 (1024)
Q Consensus 382 g~PLai~~~~~~l------~~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp--~~~~ 451 (1024)
|+|..+..+.... .+. -+...+..++..... ...+.-++..||++.+.++..++.+. .+..
T Consensus 257 G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 257 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGMEW 327 (412)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSS
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCC
Confidence 9997655554321 111 123344444332110 22345567889999999999888754 3345
Q ss_pred eCHHHHHHHHHhcCCcccCCCCccHHHHHHHHHHHHHhcCCccccCC---CCCcEEEchhH
Q 044195 452 FQEEEIISLWAAEGFLHQENSGRKMEDLGREFVQELLSRSFFQRSSK---NASRFLMHDLI 509 (1024)
Q Consensus 452 i~~~~li~~w~~~gli~~~~~~~~~~~~~~~~~~~Lv~~~l~~~~~~---~~~~~~~Hdli 509 (1024)
++...+...+..-.. ...............+++.|+..+++..... ...+|.+|.+.
T Consensus 328 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 328 INAGLLRQRYEDASL-TMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp BCHHHHHHHHHHHHH-HHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred ccHHHHHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 666555544421100 0000000113446678999999999977532 23345455443
No 73
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.61 E-value=1e-15 Score=164.30 Aligned_cols=200 Identities=20% Similarity=0.219 Sum_probs=126.7
Q ss_pred CCceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCcccc-CcccccCCCCcEEecCCCcccccc-ccccCCCCcccE
Q 044195 592 LPRLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQIL-PQSINSLYNLHTVLLEDCRRLKKL-CKDMGNLTKLHH 668 (1024)
Q Consensus 592 l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~ 668 (1024)
.++|++|+|++| .+..+| ..+.++++|++|++++|.++.+ |..+..+++|++|++++|..+..+ |..+..+++|++
T Consensus 31 ~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 457888888888 576666 4577888888888888888766 667788888888888887546666 556778888888
Q ss_pred EeccCCcccccc-CccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcE
Q 044195 669 LRNSNVHSLEEM-PKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEAL 747 (1024)
Q Consensus 669 L~l~~~~~l~~~-p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L 747 (1024)
|++++|. +..+ |..++.+++|+.|....+. +. ......+..+++|+.|
T Consensus 110 L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~---------------l~---------------~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 110 LHLDRCG-LQELGPGLFRGLAALQYLYLQDNA---------------LQ---------------ALPDDTFRDLGNLTHL 158 (285)
T ss_dssp EECTTSC-CCCCCTTTTTTCTTCCEEECCSSC---------------CC---------------CCCTTTTTTCTTCCEE
T ss_pred EECCCCc-CCEECHhHhhCCcCCCEEECCCCc---------------cc---------------ccCHhHhccCCCccEE
Confidence 8888887 5554 3445666666666321110 00 0011224556677777
Q ss_pred EEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCC-CcccCCCCCCCceEEEEecCCCCCCCC-C
Q 044195 748 VLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKF-PIWLGDFPFSKLVSLKFEYCGMCTSLP-S 825 (1024)
Q Consensus 748 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~ 825 (1024)
++++|....++ ...+..+++|+.|++++|..... |.++.. +++|+.|++++|......+ .
T Consensus 159 ~l~~n~l~~~~----------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~ 220 (285)
T 1ozn_A 159 FLHGNRISSVP----------------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--LGRLMTLYLFANNLSALPTEA 220 (285)
T ss_dssp ECCSSCCCEEC----------------TTTTTTCTTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCSCCCHHH
T ss_pred ECCCCcccccC----------------HHHhcCccccCEEECCCCcccccCHhHccC--cccccEeeCCCCcCCcCCHHH
Confidence 77766542111 12355567777777777766554 444443 6777777777775443322 3
Q ss_pred CCCCCCCceeeecCCC
Q 044195 826 VGQLPVLKHLEMRGMD 841 (1024)
Q Consensus 826 l~~l~~L~~L~L~~~~ 841 (1024)
+..+++|+.|++++|+
T Consensus 221 ~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 221 LAPLRALQYLRLNDNP 236 (285)
T ss_dssp HTTCTTCCEEECCSSC
T ss_pred cccCcccCEEeccCCC
Confidence 6667777777777664
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=8.6e-15 Score=152.49 Aligned_cols=203 Identities=15% Similarity=0.157 Sum_probs=144.1
Q ss_pred CCCCCcccCCCCCCCceEEEEecCCCCCCCC-CCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeecccccc
Q 044195 794 GTKFPIWLGDFPFSKLVSLKFEYCGMCTSLP-SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQE 872 (1024)
Q Consensus 794 ~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 872 (1024)
...+|. + .++|+.|++++|......+ .++.+++|++|++++|..++.++...+. .+++|++|++++++.
T Consensus 23 l~~ip~-~----~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~-----~l~~L~~L~l~~~n~ 92 (239)
T 2xwt_C 23 IQRIPS-L----PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY-----NLSKVTHIEIRNTRN 92 (239)
T ss_dssp CSSCCC-C----CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEE-----SCTTCCEEEEEEETT
T ss_pred ccccCC-C----CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcC-----CCcCCcEEECCCCCC
Confidence 555665 3 2477778887776443333 4677788888888777656666543322 267888888877666
Q ss_pred ccccccccccccccccCcccceeeeccCcCCcccCC--CCCCCcc---EEEEecccCc---c-ccCCCCCCcC-EEEEcc
Q 044195 873 WEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLP--ERLLLLE---KLVIQSCKQL---L-VTIQCLPALS-ELQIRG 942 (1024)
Q Consensus 873 l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp--~~l~~L~---~L~l~~c~~l---~-~~l~~l~~L~-~L~l~~ 942 (1024)
+..+....+.+ +++|+.|++++| .++ .+| ..+++|+ .|++++|..+ + ..+..+++|+ +|++++
T Consensus 93 l~~i~~~~f~~-----l~~L~~L~l~~n-~l~-~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 93 LTYIDPDALKE-----LPLLKFLGIFNT-GLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp CCEECTTSEEC-----CTTCCEEEEEEE-CCC-SCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred eeEcCHHHhCC-----CCCCCEEeCCCC-CCc-cccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 66554433333 788888888888 676 466 3556666 8888888322 2 3478899999 999999
Q ss_pred CCCccccCCCCC--CCccEEEEcCCCCcccchhhhcCCC-CCCCEEeeecCCCCCcccccccccccCCCCCCEEeeeCCC
Q 044195 943 CRRVVFSSPIDF--SSLKSVFLGDIANQVVLAALFEQGL-PQLESLKIDSVRAPTYLWQSETRLLQDIRSLNRLHISRCP 1019 (1024)
Q Consensus 943 ~~~l~~~~~~~l--~~L~~L~l~~c~~l~~l~~~~l~~l-~~L~~L~l~~c~~l~~l~~~~p~~l~~l~~L~~L~l~~c~ 1019 (1024)
|. +..++...+ ++|+.|++++|..++.++...+.++ ++|+.|++++| .++.+ |.. .+++|+.|++++|+
T Consensus 166 n~-l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l----~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 166 NG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTAL----PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CC-CCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCC----CCT--TCTTCSEEECTTC-
T ss_pred CC-CcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccC----Chh--HhccCceeeccCcc
Confidence 97 556655433 5899999999877888888788899 99999999998 77777 433 78999999999998
Q ss_pred CC
Q 044195 1020 QL 1021 (1024)
Q Consensus 1020 ~L 1021 (1024)
+|
T Consensus 238 ~l 239 (239)
T 2xwt_C 238 TL 239 (239)
T ss_dssp --
T ss_pred CC
Confidence 75
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=1.3e-16 Score=173.48 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=39.0
Q ss_pred CCCCCcEeeccCCCcc-ccCccc--ccCCCCcEEecCCCccccccccccCCC-----CcccEEeccCCccccccC-ccCC
Q 044195 615 NLKHLRFLNLSRTNIQ-ILPQSI--NSLYNLHTVLLEDCRRLKKLCKDMGNL-----TKLHHLRNSNVHSLEEMP-KGFG 685 (1024)
Q Consensus 615 ~l~~L~~L~L~~~~i~-~lp~~i--~~L~~L~~L~l~~~~~l~~lp~~i~~L-----~~L~~L~l~~~~~l~~~p-~~i~ 685 (1024)
++++|++|+|++|.++ .+|..+ ..+++|++|++++| .+..+|..++.+ ++|++|++++|. +..++ ..++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhc
Confidence 4555555555555554 345443 55555555555555 343334444444 555555555555 43333 3344
Q ss_pred CCCCCCcc
Q 044195 686 KLTCLTTL 693 (1024)
Q Consensus 686 ~l~~L~~L 693 (1024)
.+++|+.|
T Consensus 171 ~l~~L~~L 178 (312)
T 1wwl_A 171 VFPALSTL 178 (312)
T ss_dssp CCSSCCEE
T ss_pred cCCCCCEE
Confidence 45444444
No 76
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.60 E-value=2.1e-14 Score=154.14 Aligned_cols=212 Identities=20% Similarity=0.180 Sum_probs=121.2
Q ss_pred EEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCC-CCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcce
Q 044195 786 ELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLP-SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLET 864 (1024)
Q Consensus 786 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~ 864 (1024)
.++.+++....+|..+ .++|+.|++++|......+ .+..+++|++|++++|. +..+....+ ..+++|++
T Consensus 15 ~~~c~~~~l~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-----~~l~~L~~ 84 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAF-----TGLALLEQ 84 (285)
T ss_dssp EEECCSSCCSSCCTTC----CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTT-----TTCTTCCE
T ss_pred EEEcCcCCcccCCcCC----CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhc-----CCccCCCE
Confidence 4444444455555432 3466666666665433222 35566666666666653 333322211 22566666
Q ss_pred eeccccccccccccccccccccccCcccceeeeccCcCCcccCC---CCCCCccEEEEeccc--Ccc-ccCCCCCCcCEE
Q 044195 865 LCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLP---ERLLLLEKLVIQSCK--QLL-VTIQCLPALSEL 938 (1024)
Q Consensus 865 L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp---~~l~~L~~L~l~~c~--~l~-~~l~~l~~L~~L 938 (1024)
|+++++..+....+..+.. +++|++|++++| .+++..| ..+++|+.|++++|. .++ ..+..+++|++|
T Consensus 85 L~l~~n~~l~~~~~~~~~~-----l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHG-----LGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158 (285)
T ss_dssp EECCSCTTCCCCCTTTTTT-----CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred EeCCCCCCccccCHHHhcC-----CcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence 6666644344443332222 567777777766 4553333 245667777776664 222 236667777778
Q ss_pred EEccCCCccccCC---CCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCCCCcccccccccccCCCCCCEEee
Q 044195 939 QIRGCRRVVFSSP---IDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSETRLLQDIRSLNRLHI 1015 (1024)
Q Consensus 939 ~l~~~~~l~~~~~---~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l~~L~~L~l 1015 (1024)
++++|. ++.++. ..+++|+.|++++|. ++.+....+.++++|+.|++++| .++.++ +..+..+++|+.|++
T Consensus 159 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 159 FLHGNR-ISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN-NLSALP---TEALAPLRALQYLRL 232 (285)
T ss_dssp ECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCC---HHHHTTCTTCCEEEC
T ss_pred ECCCCc-ccccCHHHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCC-cCCcCC---HHHcccCcccCEEec
Confidence 877776 444332 456677888887754 44454445667778888888877 555552 345777788888888
Q ss_pred eCCC
Q 044195 1016 SRCP 1019 (1024)
Q Consensus 1016 ~~c~ 1019 (1024)
+++|
T Consensus 233 ~~N~ 236 (285)
T 1ozn_A 233 NDNP 236 (285)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 7775
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=4e-15 Score=171.89 Aligned_cols=216 Identities=14% Similarity=0.112 Sum_probs=160.6
Q ss_pred HhhccCCCCCccEEEEEecCCCCCC-cccCCCCCCCceEEEEecCCCCCCCCCCCCCCCCceeeecCCCCceEecccccc
Q 044195 774 VLDMLKPHQKLEELTITGYGGTKFP-IWLGDFPFSKLVSLKFEYCGMCTSLPSVGQLPVLKHLEMRGMDRVKSVGLEFYG 852 (1024)
Q Consensus 774 ~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~ 852 (1024)
.......+++|+.|++++|.+..++ ..+.. +++|+.|+|++|......| ++.+++|++|+|++|. +..++
T Consensus 26 l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~----- 96 (487)
T 3oja_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAP--FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----- 96 (487)
T ss_dssp HHTTSTTGGGCCEEECCSSCCCCCCGGGGTT--CTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE-----
T ss_pred HHHhcccCCCccEEEeeCCcCCCCCHHHHhC--CCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC-----
Confidence 3344455678999999999887776 35543 8899999999987544444 8889999999999873 44432
Q ss_pred CCCCCCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCcccCC---CCCCCccEEEEecccC---cc
Q 044195 853 NSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLP---ERLLLLEKLVIQSCKQ---LL 926 (1024)
Q Consensus 853 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp---~~l~~L~~L~l~~c~~---l~ 926 (1024)
..++|+.|+++++ .+....+. . +++|+.|++++| .+++..| ..+++|+.|++++|.. .+
T Consensus 97 -----~~~~L~~L~L~~N-~l~~~~~~----~----l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 97 -----VGPSIETLHAANN-NISRVSCS----R----GQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp -----ECTTCCEEECCSS-CCCCEEEC----C----CSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred -----CCCCcCEEECcCC-cCCCCCcc----c----cCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence 2488999999884 34443322 1 789999999998 6775445 3568899999988853 23
Q ss_pred ccCC-CCCCcCEEEEccCCCccccCCCCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCCCCccccccccccc
Q 044195 927 VTIQ-CLPALSELQIRGCRRVVFSSPIDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSETRLLQ 1005 (1024)
Q Consensus 927 ~~l~-~l~~L~~L~l~~~~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~ 1005 (1024)
..+. .+++|++|++++|......+...+++|+.|++++| .++.++.. +.++++|+.|++++| .++.+ |..+.
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~l~~L~~L~Ls~N-~l~~l----p~~l~ 234 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNN-KLVLI----EKALR 234 (487)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSS-CCCEECGG-GGGGTTCSEEECTTS-CCCEE----CTTCC
T ss_pred HHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCC-CCCCCCHh-HcCCCCccEEEecCC-cCccc----chhhc
Confidence 4443 68899999999998444444556889999999985 46666654 668899999999998 67777 66788
Q ss_pred CCCCCCEEeeeCCCC
Q 044195 1006 DIRSLNRLHISRCPQ 1020 (1024)
Q Consensus 1006 ~l~~L~~L~l~~c~~ 1020 (1024)
.+++|+.|++++|+-
T Consensus 235 ~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 235 FSQNLEHFDLRGNGF 249 (487)
T ss_dssp CCTTCCEEECTTCCB
T ss_pred cCCCCCEEEcCCCCC
Confidence 899999999999874
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=5.9e-16 Score=178.83 Aligned_cols=244 Identities=13% Similarity=0.095 Sum_probs=146.8
Q ss_pred CCCCceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcccE
Q 044195 590 LDLPRLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHH 668 (1024)
Q Consensus 590 ~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 668 (1024)
..+++|++|+|++| .+..+| ..++++++|++|+|++|.++..++ +..+++|++|++++| .+..+|. .++|++
T Consensus 31 ~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCE
T ss_pred ccCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCE
Confidence 45568999999988 676664 678889999999999998887665 888899999999988 6666653 388899
Q ss_pred EeccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEE
Q 044195 669 LRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALV 748 (1024)
Q Consensus 669 L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 748 (1024)
|++++|. +..+|.. .+++|+.|....+. ..+. .+..+..+++|+.|+
T Consensus 104 L~L~~N~-l~~~~~~--~l~~L~~L~L~~N~-l~~~-----------------------------~~~~~~~l~~L~~L~ 150 (487)
T 3oja_A 104 LHAANNN-ISRVSCS--RGQGKKNIYLANNK-ITML-----------------------------RDLDEGCRSRVQYLD 150 (487)
T ss_dssp EECCSSC-CCCEEEC--CCSSCEEEECCSSC-CCSG-----------------------------GGBCGGGGSSEEEEE
T ss_pred EECcCCc-CCCCCcc--ccCCCCEEECCCCC-CCCC-----------------------------CchhhcCCCCCCEEE
Confidence 9998887 6665542 34555555221111 0000 112234455666666
Q ss_pred EEecCCCCccccccccccchhhHHHHhhccC-CCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCCCCC
Q 044195 749 LRWCNRSCISNIRNEDAVDLETQTRVLDMLK-PHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLPSVG 827 (1024)
Q Consensus 749 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~ 827 (1024)
+++|..... .+..+. .+++|+.|++++|.+..+|... .+++|+.|+|++|......|.+.
T Consensus 151 Ls~N~l~~~----------------~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~ 211 (487)
T 3oja_A 151 LKLNEIDTV----------------NFAELAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQ 211 (487)
T ss_dssp CTTSCCCEE----------------EGGGGGGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGG
T ss_pred CCCCCCCCc----------------ChHHHhhhCCcccEEecCCCccccccccc---cCCCCCEEECCCCCCCCCCHhHc
Confidence 666654210 112222 4566777777776666555433 26677777777776554444566
Q ss_pred CCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCc
Q 044195 828 QLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQ 904 (1024)
Q Consensus 828 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 904 (1024)
.+++|+.|++++|. +..++..+ ..+++|+.|++++++-.....+..+ .. +++|+.|.+..+..+.
T Consensus 212 ~l~~L~~L~Ls~N~-l~~lp~~l------~~l~~L~~L~l~~N~l~c~~~~~~~-~~----l~~L~~l~~~~~~~~~ 276 (487)
T 3oja_A 212 SAAGVTWISLRNNK-LVLIEKAL------RFSQNLEHFDLRGNGFHCGTLRDFF-SK----NQRVQTVAKQTVKKLT 276 (487)
T ss_dssp GGTTCSEEECTTSC-CCEECTTC------CCCTTCCEEECTTCCBCHHHHHHHH-TT----CHHHHHHHHHHHHHHT
T ss_pred CCCCccEEEecCCc-Ccccchhh------ccCCCCCEEEcCCCCCcCcchHHHH-Hh----CCCCcEEecccccccc
Confidence 67777777777654 33443332 2266777777776433212222211 12 6777777776443333
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=1.9e-15 Score=163.63 Aligned_cols=190 Identities=18% Similarity=0.236 Sum_probs=114.8
Q ss_pred CCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcccEEe
Q 044195 591 DLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLR 670 (1024)
Q Consensus 591 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 670 (1024)
.+++|++|++++| .+..+| .+..+++|++|++++|.++.+|. +..+++|++|++++| .+..+| .+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEE
Confidence 3556667777776 566665 46667777777777777776665 667777777777776 455554 466777777777
Q ss_pred ccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEE
Q 044195 671 NSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLR 750 (1024)
Q Consensus 671 l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 750 (1024)
+++|. +..++. ++.+++|+.|....+. +. . +. .+..+++|+.|+++
T Consensus 114 l~~n~-l~~~~~-l~~l~~L~~L~l~~n~---------------l~---------~-------~~-~l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 114 LTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ---------------IT---------N-------IS-PLAGLTNLQYLSIG 159 (308)
T ss_dssp CTTSC-CCCCGG-GTTCTTCCEEECCSSC---------------CC---------C-------CG-GGGGCTTCCEEECC
T ss_pred CCCCC-CCCchh-hcCCCCCCEEECCCCc---------------cC---------c-------Cc-cccCCCCccEEEcc
Confidence 77766 555543 5555555555221110 00 0 00 03344566666666
Q ss_pred ecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCCCCCCCC
Q 044195 751 WCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLPSVGQLP 830 (1024)
Q Consensus 751 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~ 830 (1024)
+|.... ...+..+++|+.|++++|....++. +. .+++|+.|++++|... .++.+..++
T Consensus 160 ~n~l~~------------------~~~l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~-~~~~l~~l~ 217 (308)
T 1h6u_A 160 NAQVSD------------------LTPLANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQIS-DVSPLANTS 217 (308)
T ss_dssp SSCCCC------------------CGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCC-BCGGGTTCT
T ss_pred CCcCCC------------------ChhhcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccC-ccccccCCC
Confidence 665411 1125566777777777777666664 22 3677888888777643 344567778
Q ss_pred CCceeeecCCC
Q 044195 831 VLKHLEMRGMD 841 (1024)
Q Consensus 831 ~L~~L~L~~~~ 841 (1024)
+|+.|++++|+
T Consensus 218 ~L~~L~l~~N~ 228 (308)
T 1h6u_A 218 NLFIVTLTNQT 228 (308)
T ss_dssp TCCEEEEEEEE
T ss_pred CCCEEEccCCe
Confidence 88888887764
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=2.4e-16 Score=174.07 Aligned_cols=233 Identities=18% Similarity=0.200 Sum_probs=116.7
Q ss_pred CceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccc--cCcccccCCCCcEEecCCCccccccccccCCCCcccEEe
Q 044195 593 PRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQI--LPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLR 670 (1024)
Q Consensus 593 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 670 (1024)
+++++|++++| .+...+..+.++++|++|++++|.+.. +|..+..+++|++|++++|......|..++++++|++|+
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 45666666666 455444445556666666666666542 555556666666666666633234455555666666666
Q ss_pred ccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEE
Q 044195 671 NSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLR 750 (1024)
Q Consensus 671 l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 750 (1024)
+++|..+.. ..++..+..+++|++|+++
T Consensus 149 L~~~~~l~~----------------------------------------------------~~l~~~~~~~~~L~~L~l~ 176 (336)
T 2ast_B 149 LSGCSGFSE----------------------------------------------------FALQTLLSSCSRLDELNLS 176 (336)
T ss_dssp CTTCBSCCH----------------------------------------------------HHHHHHHHHCTTCCEEECC
T ss_pred CCCCCCCCH----------------------------------------------------HHHHHHHhcCCCCCEEcCC
Confidence 666531221 0111222333444555554
Q ss_pred ec-CCCCccccccccccchhhHHHHhhccCCCC-CccEEEEEecC--C--CCCCcccCCCCCCCceEEEEecCCCCC--C
Q 044195 751 WC-NRSCISNIRNEDAVDLETQTRVLDMLKPHQ-KLEELTITGYG--G--TKFPIWLGDFPFSKLVSLKFEYCGMCT--S 822 (1024)
Q Consensus 751 ~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~--~--~~~p~~~~~~~l~~L~~L~L~~~~~~~--~ 822 (1024)
+| ... .......+..++ +|+.|++++|. . ..+|..+.. +++|+.|++++|..++ .
T Consensus 177 ~~~~l~---------------~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~--~~~L~~L~l~~~~~l~~~~ 239 (336)
T 2ast_B 177 WCFDFT---------------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR--CPNLVHLDLSDSVMLKNDC 239 (336)
T ss_dssp CCTTCC---------------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH--CTTCSEEECTTCTTCCGGG
T ss_pred CCCCcC---------------hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh--CCCCCEEeCCCCCcCCHHH
Confidence 44 320 111222233344 55555555542 1 122332222 5666777776666332 2
Q ss_pred CCCCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccccccccccccccCcccceeeeccCcC
Q 044195 823 LPSVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSK 902 (1024)
Q Consensus 823 l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 902 (1024)
++.+..+++|++|++++|..+...+.... ..+++|+.|+++++ +.......+ ..+|+.|++++| .
T Consensus 240 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~--i~~~~~~~l-------~~~l~~L~l~~n-~ 304 (336)
T 2ast_B 240 FQEFFQLNYLQHLSLSRCYDIIPETLLEL-----GEIPTLKTLQVFGI--VPDGTLQLL-------KEALPHLQINCS-H 304 (336)
T ss_dssp GGGGGGCTTCCEEECTTCTTCCGGGGGGG-----GGCTTCCEEECTTS--SCTTCHHHH-------HHHSTTSEESCC-C
T ss_pred HHHHhCCCCCCEeeCCCCCCCCHHHHHHH-----hcCCCCCEEeccCc--cCHHHHHHH-------HhhCcceEEecc-c
Confidence 33566677777777777753322211111 23677777777776 222111110 134666777655 7
Q ss_pred CcccCCCC
Q 044195 903 LQGTLPER 910 (1024)
Q Consensus 903 L~~~lp~~ 910 (1024)
+++..|..
T Consensus 305 l~~~~~~~ 312 (336)
T 2ast_B 305 FTTIARPT 312 (336)
T ss_dssp SCCTTCSS
T ss_pred CccccCCc
Confidence 77666643
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.56 E-value=6.5e-15 Score=157.23 Aligned_cols=202 Identities=19% Similarity=0.157 Sum_probs=126.8
Q ss_pred CceEEEEeCCCCCcccCCc-cccCCCCCcEeeccCCCccccCc-ccccCCCCcEEecCCCccccccc-cccCCCCcccEE
Q 044195 593 PRLRVFSLCGYCNIIDLPN-EIGNLKHLRFLNLSRTNIQILPQ-SINSLYNLHTVLLEDCRRLKKLC-KDMGNLTKLHHL 669 (1024)
Q Consensus 593 ~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L 669 (1024)
++|++|+|++| .+..++. .+.++++|++|++++|.++.+|. .+.++++|++|++++| .+..++ ..+.++++|++|
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEE
Confidence 35777777777 5666653 67777778888887777776654 5777777888888777 444444 457777778888
Q ss_pred eccCCccccccCc-cCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEE
Q 044195 670 RNSNVHSLEEMPK-GFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALV 748 (1024)
Q Consensus 670 ~l~~~~~l~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 748 (1024)
++++|. +..++. .++.+++|+.|....+. +. ...++..+..+++|+.|+
T Consensus 106 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~---------------l~--------------~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 106 VAVETN-LASLENFPIGHLKTLKELNVAHNL---------------IQ--------------SFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp ECTTSC-CCCSTTCCCTTCTTCCEEECCSSC---------------CC--------------CCCCCGGGGGCTTCCEEE
T ss_pred ECCCCC-ccccCchhcccCCCCCEEECcCCc---------------cc--------------eecCchhhccCCCCCEEE
Confidence 777776 555544 35566666655221110 00 001223355566777777
Q ss_pred EEecCCCCccccccccccchhhHHHHhhccCCCCCcc-EEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCC-CC
Q 044195 749 LRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLE-ELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLP-SV 826 (1024)
Q Consensus 749 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l 826 (1024)
+++|....+.. ..+..+..++.|. .|++++|....+|..... ..+|+.|++++|......+ .+
T Consensus 156 Ls~N~l~~~~~-------------~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~ 220 (276)
T 2z62_A 156 LSSNKIQSIYC-------------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLKELALDTNQLKSVPDGIF 220 (276)
T ss_dssp CCSSCCCEECG-------------GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC--SCCEEEEECCSSCCSCCCTTTT
T ss_pred CCCCCCCcCCH-------------HHhhhhhhccccceeeecCCCcccccCccccC--CCcccEEECCCCceeecCHhHh
Confidence 77776522110 0112222333333 788888888777766543 4589999999998544333 36
Q ss_pred CCCCCCceeeecCCC
Q 044195 827 GQLPVLKHLEMRGMD 841 (1024)
Q Consensus 827 ~~l~~L~~L~L~~~~ 841 (1024)
..+++|+.|++++|+
T Consensus 221 ~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 221 DRLTSLQKIWLHTNP 235 (276)
T ss_dssp TTCCSCCEEECCSSC
T ss_pred cccccccEEEccCCc
Confidence 789999999999875
No 82
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.56 E-value=6.3e-14 Score=156.06 Aligned_cols=290 Identities=12% Similarity=0.120 Sum_probs=170.0
Q ss_pred ccCccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCC-----CCHH
Q 044195 179 NEAKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSED-----FNVF 253 (1024)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~ 253 (1024)
.+..||||++++++|.+ +. . +++.|+|++|+|||+|++++++. ... ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~------~---~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR------A---PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC------S---SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hc------C---CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 34569999999999988 62 1 59999999999999999999873 222 3578887643 3444
Q ss_pred HHHHHHHHhccC--------------------CC-----C----CCCcHHHHHHHHHHHhCCCceeEEeeccCCCC----
Q 044195 254 RVTKSILKSITN--------------------DQ-----S----KDDDLNWVQEKLKKQLSGKKFLLVLDDVWNEN---- 300 (1024)
Q Consensus 254 ~~~~~il~~l~~--------------------~~-----~----~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~---- 300 (1024)
..+..+.+.+.. +. . .......+...+.+... ++++|||||++...
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 444444333210 00 0 12234445555544322 49999999996522
Q ss_pred HHHHHHhhcCCCCCCCCcEEEEEcCCchhhhc----------c-CC-ccceecCCCChHhHHHHHHhhhcCCCCCCCCcc
Q 044195 301 YEYWSIFSRPFGAGAPGSKIVVTTRNLRVTVN----------M-GA-DQAYQLKELSNDDCLCLLTQISLGTGDFNIHPS 368 (1024)
Q Consensus 301 ~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~~----------~-~~-~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~ 368 (1024)
...+..+.. +.....+.++|+|++....... . +. ...+.+.+|+.+|+.+++......... ... .
T Consensus 155 ~~~~~~l~~-~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~-~ 231 (357)
T 2fna_A 155 VNLLPALAY-AYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DFK-D 231 (357)
T ss_dssp CCCHHHHHH-HHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CCC-C
T ss_pred hhHHHHHHH-HHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CCC-c
Confidence 112222222 1111246789999997643111 1 11 257899999999999999875321110 111 1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHH-HhccccCCCCCCCChhhHHH-hhh--cCCChhHHHHHhhhc
Q 044195 369 LKEVGEKIVMKCKGLPLAAKTLGGLLRGKHDPRDWEFV-LNNDICNLPEENCNIIPALG-VSC--HFLPPQLKQCFAYCS 444 (1024)
Q Consensus 369 ~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~-l~~~~~~~~~~~~~~~~~l~-~sy--~~L~~~~k~cfl~~~ 444 (1024)
. ..|++.++|+|+++..++..+....+...|..- .+... ..+...+. +.+ ..+++..+..+..+|
T Consensus 232 ---~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~l~~~~~~~l~~la 300 (357)
T 2fna_A 232 ---Y-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK-------KLILKEFENFLHGREIARKRYLNIMRTLS 300 (357)
T ss_dssp ---H-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-------HHHHHHHHHHHTTCGGGHHHHHHHHHHHT
T ss_pred ---H-HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH-------HHHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 1 679999999999999998776433233233211 11000 00111122 111 168888999999999
Q ss_pred cCCCCceeCHHHHHHHHH-hcCCcccCCCCccHHHHHHHHHHHHHhcCCccccCCCCCcEE-EchhHHHHH
Q 044195 445 LFPKGYEFQEEEIISLWA-AEGFLHQENSGRKMEDLGREFVQELLSRSFFQRSSKNASRFL-MHDLINDLA 513 (1024)
Q Consensus 445 ~fp~~~~i~~~~li~~w~-~~gli~~~~~~~~~~~~~~~~~~~Lv~~~l~~~~~~~~~~~~-~Hdli~~~~ 513 (1024)
. +. +...+..... ..|. ... ......+++.|++.+++...+ ..|. .|++++++.
T Consensus 301 ~---g~--~~~~l~~~~~~~~g~------~~~-~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~l 356 (357)
T 2fna_A 301 K---CG--KWSDVKRALELEEGI------EIS-DSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLAF 356 (357)
T ss_dssp T---CB--CHHHHHHHHHHHHCS------CCC-HHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHHT
T ss_pred c---CC--CHHHHHHHHHHhcCC------CCC-HHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHhh
Confidence 8 22 4444443221 1121 011 234678899999999998754 3465 577887754
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=1.7e-14 Score=154.41 Aligned_cols=200 Identities=22% Similarity=0.198 Sum_probs=121.9
Q ss_pred hCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCcccc-CcccccCCCCcEEecCCCccccccccccCCCCccc
Q 044195 589 LLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQIL-PQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLH 667 (1024)
Q Consensus 589 l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~ 667 (1024)
+.++++|+.++++++ .+..+|..+. ++|++|+|++|.++.+ |..+..+++|++|++++| .+..+|.. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCC
T ss_pred ccccCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCC
Confidence 355667777777776 6777776554 5777777777777755 345777777777777776 56666543 6777777
Q ss_pred EEeccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcE
Q 044195 668 HLRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEAL 747 (1024)
Q Consensus 668 ~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L 747 (1024)
+|++++|. +..+|..+..+++|+.|....+. +. . ..+..+..+++|+.|
T Consensus 81 ~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~---------------l~---------~------l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 81 TLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNR---------------LT---------S------LPLGALRGLGELQEL 129 (290)
T ss_dssp EEECCSSC-CSSCCCCTTTCTTCCEEECCSSC---------------CC---------C------CCSSTTTTCTTCCEE
T ss_pred EEECCCCc-CCcCchhhccCCCCCEEECCCCc---------------Cc---------c------cCHHHHcCCCCCCEE
Confidence 77777776 66666666666666655221110 00 0 001124445566666
Q ss_pred EEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCCCCC
Q 044195 748 VLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLPSVG 827 (1024)
Q Consensus 748 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~ 827 (1024)
++++|....++ ...+..+++|+.|++++|....+|..+.. .+++|+.|++++|......+.+.
T Consensus 130 ~L~~N~l~~~~----------------~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~~ip~~~~ 192 (290)
T 1p9a_G 130 YLKGNELKTLP----------------PGLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLYTIPKGFF 192 (290)
T ss_dssp ECTTSCCCCCC----------------TTTTTTCTTCCEEECTTSCCSCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTT
T ss_pred ECCCCCCCccC----------------hhhcccccCCCEEECCCCcCCccCHHHhc-CcCCCCEEECCCCcCCccChhhc
Confidence 66666542111 12345567777777777777777654432 36777777777776443333556
Q ss_pred CCCCCceeeecCCC
Q 044195 828 QLPVLKHLEMRGMD 841 (1024)
Q Consensus 828 ~l~~L~~L~L~~~~ 841 (1024)
.+++|+.|++++|+
T Consensus 193 ~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 193 GSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCCCSEEECCSCC
T ss_pred ccccCCeEEeCCCC
Confidence 66777777777664
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.54 E-value=4.2e-14 Score=150.17 Aligned_cols=196 Identities=19% Similarity=0.260 Sum_probs=117.1
Q ss_pred ceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCc-ccccCCCCcEEecCCCccccccccc-cCCCCcccEEec
Q 044195 594 RLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQ-SINSLYNLHTVLLEDCRRLKKLCKD-MGNLTKLHHLRN 671 (1024)
Q Consensus 594 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l 671 (1024)
+++.++++++ .++.+|..+. .+|++|+|++|.++.+|. .+.++++|++|++++| .+..+|.. +.++++|++|++
T Consensus 17 ~~~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCC-CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEEC
Confidence 3566777777 5777776554 567777777777776654 5777777777777776 55666654 366777777777
Q ss_pred cCCccccccCcc-CCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEE
Q 044195 672 SNVHSLEEMPKG-FGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLR 750 (1024)
Q Consensus 672 ~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 750 (1024)
++|. +..+|.. +..+++|+.|....+. +. . ..+..+..+++|+.|+++
T Consensus 93 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~---------------l~---------~------~~~~~~~~l~~L~~L~Ls 141 (270)
T 2o6q_A 93 TDNK-LQALPIGVFDQLVNLAELRLDRNQ---------------LK---------S------LPPRVFDSLTKLTYLSLG 141 (270)
T ss_dssp CSSC-CCCCCTTTTTTCSSCCEEECCSSC---------------CC---------C------CCTTTTTTCTTCCEEECC
T ss_pred CCCc-CCcCCHhHcccccCCCEEECCCCc---------------cC---------e------eCHHHhCcCcCCCEEECC
Confidence 7776 5555543 3455555555221100 00 0 011123455666677766
Q ss_pred ecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCC-CCCCC
Q 044195 751 WCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLP-SVGQL 829 (1024)
Q Consensus 751 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l 829 (1024)
+|....++ ...+..+++|+.|++++|....+|..... .+++|+.|++++|......+ .+..+
T Consensus 142 ~n~l~~~~----------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l 204 (270)
T 2o6q_A 142 YNELQSLP----------------KGVFDKLTSLKELRLYNNQLKRVPEGAFD-KLTELKTLKLDNNQLKRVPEGAFDSL 204 (270)
T ss_dssp SSCCCCCC----------------TTTTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred CCcCCccC----------------HhHccCCcccceeEecCCcCcEeChhHhc-cCCCcCEEECCCCcCCcCCHHHhccc
Confidence 66542111 12345567777777777776666653221 36777777777775443322 36667
Q ss_pred CCCceeeecCCC
Q 044195 830 PVLKHLEMRGMD 841 (1024)
Q Consensus 830 ~~L~~L~L~~~~ 841 (1024)
++|+.|++++|+
T Consensus 205 ~~L~~L~l~~N~ 216 (270)
T 2o6q_A 205 EKLKMLQLQENP 216 (270)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCCEEEecCCC
Confidence 777777777764
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.53 E-value=8.5e-16 Score=167.09 Aligned_cols=247 Identities=17% Similarity=0.096 Sum_probs=168.0
Q ss_pred CCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCcc--ccCcccc-------cCCCCcEEecCCCcccccccccc
Q 044195 590 LDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQ--ILPQSIN-------SLYNLHTVLLEDCRRLKKLCKDM 660 (1024)
Q Consensus 590 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~--~lp~~i~-------~L~~L~~L~l~~~~~l~~lp~~i 660 (1024)
...++|+.|++++| .+ .+|..+... |++|+|++|.+. .+|..+. ++++|++|++++|.....+|..+
T Consensus 40 ~~~~~L~~l~l~~n-~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVD-TE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCC-TT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccc-cc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 45667888888888 56 888777654 999999999886 4676665 79999999999984444788776
Q ss_pred --CCCCcccEEeccCCccccccCccCCCC-----CCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccc
Q 044195 661 --GNLTKLHHLRNSNVHSLEEMPKGFGKL-----TCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDA 733 (1024)
Q Consensus 661 --~~L~~L~~L~l~~~~~l~~~p~~i~~l-----~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~ 733 (1024)
+.+++|++|++++|. +..+|..++.+ ++|++|....+ .. ...
T Consensus 116 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N--------------------------~l----~~~ 164 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQA--------------------------HS----LNF 164 (312)
T ss_dssp SSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESC--------------------------SC----CCC
T ss_pred HHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCC--------------------------CC----ccc
Confidence 899999999999998 77667666555 56666532211 10 011
Q ss_pred hhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhcc--CCCCCccEEEEEecCCCCCCc---ccCCCCCCC
Q 044195 734 IEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDML--KPHQKLEELTITGYGGTKFPI---WLGDFPFSK 808 (1024)
Q Consensus 734 ~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~p~---~~~~~~l~~ 808 (1024)
.+..+..+++|+.|++++|... .....+..+ ..+++|+.|++++|.+..++. .+. ..+++
T Consensus 165 ~~~~~~~l~~L~~L~Ls~N~l~--------------~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~~l~~ 229 (312)
T 1wwl_A 165 SCEQVRVFPALSTLDLSDNPEL--------------GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA-AARVQ 229 (312)
T ss_dssp CTTTCCCCSSCCEEECCSCTTC--------------HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH-HTTCC
T ss_pred hHHHhccCCCCCEEECCCCCcC--------------cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH-hcCCC
Confidence 1234566778888888887641 011223333 677888888888887764432 221 13678
Q ss_pred ceEEEEecCCCCCCC--CCCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeecccccccccccccccccccc
Q 044195 809 LVSLKFEYCGMCTSL--PSVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVN 886 (1024)
Q Consensus 809 L~~L~L~~~~~~~~l--~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 886 (1024)
|+.|++++|...... +.+..+++|++|++++|. ++.++..+ +++|++|+++++ .+.+. +. + ..
T Consensus 230 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~--------~~~L~~L~Ls~N-~l~~~-p~-~-~~-- 294 (312)
T 1wwl_A 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGL--------PAKLSVLDLSYN-RLDRN-PS-P-DE-- 294 (312)
T ss_dssp CSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSC--------CSEEEEEECCSS-CCCSC-CC-T-TT--
T ss_pred CCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhc--------cCCceEEECCCC-CCCCC-hh-H-hh--
Confidence 888888888765544 355667889999998874 33443322 378889988873 55554 22 2 22
Q ss_pred ccCcccceeeeccCcCCc
Q 044195 887 EVFPKLRKLSLLRCSKLQ 904 (1024)
Q Consensus 887 ~~~~~L~~L~l~~c~~L~ 904 (1024)
+++|++|++++| .++
T Consensus 295 --l~~L~~L~L~~N-~l~ 309 (312)
T 1wwl_A 295 --LPQVGNLSLKGN-PFL 309 (312)
T ss_dssp --SCEEEEEECTTC-TTT
T ss_pred --CCCCCEEeccCC-CCC
Confidence 899999999998 454
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.53 E-value=2.2e-14 Score=152.46 Aligned_cols=88 Identities=22% Similarity=0.346 Sum_probs=57.5
Q ss_pred CCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccc-cCCCCcccE
Q 044195 590 LDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKD-MGNLTKLHH 668 (1024)
Q Consensus 590 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~ 668 (1024)
..+++|+.|++++| .+..++ .++.+++|++|++++|.++.++ .+..+++|++|++++| .+..+|.. ++++++|++
T Consensus 38 ~~l~~L~~L~l~~~-~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNS-DIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCC-Cccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCE
Confidence 34566777777777 566654 3667777777777777776654 5667777777777776 45555443 567777777
Q ss_pred EeccCCccccccCc
Q 044195 669 LRNSNVHSLEEMPK 682 (1024)
Q Consensus 669 L~l~~~~~l~~~p~ 682 (1024)
|++++|. +..+|.
T Consensus 114 L~L~~n~-l~~~~~ 126 (272)
T 3rfs_A 114 LVLVENQ-LQSLPD 126 (272)
T ss_dssp EECTTSC-CCCCCT
T ss_pred EECCCCc-CCccCH
Confidence 7777776 444443
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=2.9e-13 Score=149.62 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=36.7
Q ss_pred cEeeccCCCccccCcccccCCCCcEEecCCCcccccccc-ccCCCCcccEEeccCCccccccCc
Q 044195 620 RFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCK-DMGNLTKLHHLRNSNVHSLEEMPK 682 (1024)
Q Consensus 620 ~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~ 682 (1024)
++++.++++++++|..+ .++|++|++++| .++.+|. .+.++++|++|++++|...+.+|.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~ 72 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA 72 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECT
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccCh
Confidence 45566666666666655 356667777666 5666664 356777777777777763344443
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.52 E-value=8.1e-14 Score=145.06 Aligned_cols=72 Identities=22% Similarity=0.354 Sum_probs=41.7
Q ss_pred cccCCccccCCCCCcEeeccCCCccccCc-ccccCCCCcEEecCCCcccccccc-ccCCCCcccEEeccC-CccccccC
Q 044195 606 IIDLPNEIGNLKHLRFLNLSRTNIQILPQ-SINSLYNLHTVLLEDCRRLKKLCK-DMGNLTKLHHLRNSN-VHSLEEMP 681 (1024)
Q Consensus 606 l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~-~~~l~~~p 681 (1024)
+..+|. +. .+|++|++++|.++.+|. .+..+++|++|++++|..+..+|. .+.++++|++|++++ |. +..+|
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYID 97 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEEC
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcC
Confidence 555555 32 266666666666666654 456666666666666633555543 456666666666665 44 44444
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.52 E-value=2.5e-14 Score=154.87 Aligned_cols=193 Identities=18% Similarity=0.171 Sum_probs=136.4
Q ss_pred ccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCccccc
Q 044195 559 IRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINS 638 (1024)
Q Consensus 559 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~ 638 (1024)
..++++|+.|.+.++. +. .++.+..+++|++|+|++| .+..+|. +.++++|++|++++|.++.+| .+..
T Consensus 37 ~~~l~~L~~L~l~~~~------i~--~l~~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~ 105 (308)
T 1h6u_A 37 QADLDGITTLSAFGTG------VT--TIEGVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AIAG 105 (308)
T ss_dssp HHHHHTCCEEECTTSC------CC--CCTTGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTT
T ss_pred HHHcCCcCEEEeeCCC------cc--CchhhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-hhcC
Confidence 3456778888887664 11 1335678889999999988 7888877 888999999999999988876 5888
Q ss_pred CCCCcEEecCCCccccccccccCCCCcccEEeccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCc
Q 044195 639 LYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGT 718 (1024)
Q Consensus 639 L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 718 (1024)
+++|++|++++| .+..+|. +..+++|++|++++|. +..++. ++.+++|+.|....+. +.
T Consensus 106 l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~---------------l~-- 164 (308)
T 1h6u_A 106 LQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQ---------------VS-- 164 (308)
T ss_dssp CTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC---------------CC--
T ss_pred CCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCc---------------CC--
Confidence 999999999998 6777765 8889999999999887 766654 6666666666321110 00
Q ss_pred eEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCC
Q 044195 719 LEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFP 798 (1024)
Q Consensus 719 L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p 798 (1024)
.+.. +..+++|+.|++++|....+ ..+..+++|+.|++++|....++
T Consensus 165 --------------~~~~-l~~l~~L~~L~l~~n~l~~~------------------~~l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 165 --------------DLTP-LANLSKLTTLKADDNKISDI------------------SPLASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp --------------CCGG-GTTCTTCCEEECCSSCCCCC------------------GGGGGCTTCCEEECTTSCCCBCG
T ss_pred --------------CChh-hcCCCCCCEEECCCCccCcC------------------hhhcCCCCCCEEEccCCccCccc
Confidence 0111 45566777777777765211 12556677888888888777766
Q ss_pred cccCCCCCCCceEEEEecCCC
Q 044195 799 IWLGDFPFSKLVSLKFEYCGM 819 (1024)
Q Consensus 799 ~~~~~~~l~~L~~L~L~~~~~ 819 (1024)
. +. .+++|+.|++++|..
T Consensus 212 ~-l~--~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 212 P-LA--NTSNLFIVTLTNQTI 229 (308)
T ss_dssp G-GT--TCTTCCEEEEEEEEE
T ss_pred c-cc--CCCCCCEEEccCCee
Confidence 4 33 378888888888764
No 90
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.51 E-value=1.4e-14 Score=128.26 Aligned_cols=79 Identities=23% Similarity=0.405 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHhcHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHhhc--ccCChHHHHHHHHHHHHHhhccchhhhHH
Q 044195 8 VLTASFELLIKKLASLELFTQHEKLKADFMRWKDKMEMIQAVLADAEDR--QTKDKSVKKWLDKLQNLAYDVEDILDEFE 85 (1024)
Q Consensus 8 ~~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~l~~~~yd~ed~ld~~~ 85 (1024)
++++++++|...+..+ +....+|++++++|+++|++|++||.+|+.+ +..+++++.|+++|||+|||+|||||+|.
T Consensus 2 ~v~~ll~KL~~ll~~E--~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~ 79 (115)
T 3qfl_A 2 AISNLIPKLGELLTEE--FKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFL 79 (115)
T ss_dssp TTCSHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH--HHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544322 4455679999999999999999999999987 56899999999999999999999999999
Q ss_pred HHH
Q 044195 86 TEA 88 (1024)
Q Consensus 86 ~~~ 88 (1024)
|+.
T Consensus 80 ~~~ 82 (115)
T 3qfl_A 80 VQV 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 987
No 91
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.51 E-value=3.9e-13 Score=142.68 Aligned_cols=190 Identities=17% Similarity=0.171 Sum_probs=106.1
Q ss_pred CccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCC-CCCCCCCCceeeecCCCCceEeccccccCCCCCCCCC
Q 044195 783 KLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLP-SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPS 861 (1024)
Q Consensus 783 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 861 (1024)
..+.++++++....+|..+ .++|+.|++++|......+ .+..+++|++|++++|. +..++...+ ..+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~-----~~l~~ 86 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI----PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIF-----KELKN 86 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTT-----SSCTT
T ss_pred CCCEEEccCCCCCccCCCC----CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhh-----cCCCC
Confidence 4566777777777777544 3567788887776443333 56777788888887753 333333222 22667
Q ss_pred cceeeccccccccccccccccccccccCcccceeeeccCcCCcccCC---CCCCCccEEEEeccc--Ccc-ccCCCCCCc
Q 044195 862 LETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLP---ERLLLLEKLVIQSCK--QLL-VTIQCLPAL 935 (1024)
Q Consensus 862 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp---~~l~~L~~L~l~~c~--~l~-~~l~~l~~L 935 (1024)
|++|+++++ .+.......+.. +++|++|++++| .+++..+ ..+++|+.|++++|. .++ ..+..+++|
T Consensus 87 L~~L~l~~n-~l~~~~~~~~~~-----l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 87 LETLWVTDN-KLQALPIGVFDQ-----LVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159 (270)
T ss_dssp CCEEECCSS-CCCCCCTTTTTT-----CSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCEEECCCC-cCCcCCHhHccc-----ccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence 777777663 333332221111 677777777776 5552222 234556666665553 122 224556666
Q ss_pred CEEEEccCCCccccCC---CCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCC
Q 044195 936 SELQIRGCRRVVFSSP---IDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVR 991 (1024)
Q Consensus 936 ~~L~l~~~~~l~~~~~---~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~ 991 (1024)
++|++++|. +..++. ..+++|++|++++| .++.++...+..+++|+.|++++|+
T Consensus 160 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 160 KELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ceeEecCCc-CcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 666666665 333332 33456666666654 4445555455566666666666654
No 92
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.49 E-value=5.9e-14 Score=149.76 Aligned_cols=204 Identities=20% Similarity=0.177 Sum_probs=143.5
Q ss_pred CCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCccccC-cccccCC
Q 044195 563 QQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQILP-QSINSLY 640 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp-~~i~~L~ 640 (1024)
+++++|.+.++. +.......+..+++|++|+|++| .+..++ ..+.++++|++|+|++|.++.++ ..+.+++
T Consensus 28 ~~l~~L~ls~n~------l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFNP------LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (276)
T ss_dssp TTCCEEECTTCC------CCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred CCccEEECCCCc------ccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence 468888888765 33333446788999999999999 677776 47889999999999999998776 5689999
Q ss_pred CCcEEecCCCcccccccc-ccCCCCcccEEeccCCccccc--cCccCCCCCCCCccCceeeCCCCCcccccccCcccCCC
Q 044195 641 NLHTVLLEDCRRLKKLCK-DMGNLTKLHHLRNSNVHSLEE--MPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQG 717 (1024)
Q Consensus 641 ~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 717 (1024)
+|++|++++| .+..++. .++++++|++|++++|. +.. +|..++.+++|+.|....+.. .......+.
T Consensus 101 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~------- 170 (276)
T 2z62_A 101 SLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLR------- 170 (276)
T ss_dssp TCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCC-CEECGGGGH-------
T ss_pred cccEEECCCC-CccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCC-CcCCHHHhh-------
Confidence 9999999998 5655554 68899999999999998 655 677788888888874322211 100011111
Q ss_pred ceEeccCCCCCCcccchhhhcCCCCCCC-cEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCC
Q 044195 718 TLEISSLENVKCVGDAIEAQLNRKVNLE-ALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTK 796 (1024)
Q Consensus 718 ~L~i~~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 796 (1024)
.+..++.|. +|++++|....+ ........+|+.|++++|....
T Consensus 171 -------------------~l~~L~~l~l~L~ls~n~l~~~-----------------~~~~~~~~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 171 -------------------VLHQMPLLNLSLDLSLNPMNFI-----------------QPGAFKEIRLKELALDTNQLKS 214 (276)
T ss_dssp -------------------HHHTCTTCCEEEECCSSCCCEE-----------------CTTSSCSCCEEEEECCSSCCSC
T ss_pred -------------------hhhhccccceeeecCCCccccc-----------------CccccCCCcccEEECCCCceee
Confidence 122222333 566766665211 1122233489999999999988
Q ss_pred CCcccCCCCCCCceEEEEecCCCC
Q 044195 797 FPIWLGDFPFSKLVSLKFEYCGMC 820 (1024)
Q Consensus 797 ~p~~~~~~~l~~L~~L~L~~~~~~ 820 (1024)
+|..+.. .+++|+.|++++|+..
T Consensus 215 ~~~~~~~-~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 215 VPDGIFD-RLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCTTTTT-TCCSCCEEECCSSCBC
T ss_pred cCHhHhc-ccccccEEEccCCccc
Confidence 8876532 4899999999999743
No 93
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.49 E-value=2.9e-14 Score=151.54 Aligned_cols=125 Identities=28% Similarity=0.456 Sum_probs=96.7
Q ss_pred ccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcc-
Q 044195 557 DFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQS- 635 (1024)
Q Consensus 557 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~- 635 (1024)
.....+++|+.|.+.++. + ..++.+..+++|++|+|++| .+..++ .++++++|++|++++|.++.+|..
T Consensus 35 ~~~~~l~~L~~L~l~~~~------i--~~~~~l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~ 104 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNSD------I--KSVQGIQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQLQSLPNGV 104 (272)
T ss_dssp ECHHHHTTCCEEECTTSC------C--CCCTTGGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSCCCCCCTTT
T ss_pred cccccccceeeeeeCCCC------c--ccccccccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCccCccChhH
Confidence 344567888888887764 1 22445788999999999999 687775 689999999999999999988765
Q ss_pred cccCCCCcEEecCCCccccccccc-cCCCCcccEEeccCCccccccCcc-CCCCCCCCcc
Q 044195 636 INSLYNLHTVLLEDCRRLKKLCKD-MGNLTKLHHLRNSNVHSLEEMPKG-FGKLTCLTTL 693 (1024)
Q Consensus 636 i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L 693 (1024)
+.++++|++|++++| .+..+|.. ++.+++|++|++++|. +..+|.. ++.+++|+.|
T Consensus 105 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 105 FDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred hcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEE
Confidence 689999999999999 66666654 7899999999999997 6666543 3444444443
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.49 E-value=4.1e-14 Score=153.64 Aligned_cols=227 Identities=17% Similarity=0.119 Sum_probs=142.1
Q ss_pred CCceEEecCCCCCCCCCchhhhhhhh---hCCCCceEEEEeCCCCCcccCCccc--cCCCCCcEeeccCCCcccc-C---
Q 044195 563 QQLRTFLPMKLSDYGGDYLAWSVLQL---LLDLPRLRVFSLCGYCNIIDLPNEI--GNLKHLRFLNLSRTNIQIL-P--- 633 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~~~~~~---l~~l~~L~~L~L~~~~~l~~lp~~l--~~l~~L~~L~L~~~~i~~l-p--- 633 (1024)
..++.+.+.++. ++...... +..+++|++|+|++|......|..+ ..+++|++|+|++|.+... |
T Consensus 64 ~~l~~l~l~~~~------~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~ 137 (310)
T 4glp_A 64 LRVRRLTVGAAQ------VPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA 137 (310)
T ss_dssp CCCCEEEECSCC------CBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH
T ss_pred cceeEEEEeCCc------CCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH
Confidence 345666666543 32322222 2345669999999994334567766 8899999999999998842 2
Q ss_pred -cccccCCCCcEEecCCCcccccc-ccccCCCCcccEEeccCCccccc--cCc--cCCCCCCCCccCceeeCCCCCcccc
Q 044195 634 -QSINSLYNLHTVLLEDCRRLKKL-CKDMGNLTKLHHLRNSNVHSLEE--MPK--GFGKLTCLTTLCRFVVGKDSGSALR 707 (1024)
Q Consensus 634 -~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~--~p~--~i~~l~~L~~L~~~~~~~~~~~~~~ 707 (1024)
..+..+++|++|++++| .+..+ |..++.+++|++|++++|...+. ++. .++.+++|++|....+.
T Consensus 138 ~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-------- 208 (310)
T 4glp_A 138 ELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-------- 208 (310)
T ss_dssp HHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC--------
T ss_pred HHHhhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC--------
Confidence 33457899999999998 44444 46788999999999999973221 322 23566667666322110
Q ss_pred cccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEE
Q 044195 708 ELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEEL 787 (1024)
Q Consensus 708 ~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L 787 (1024)
+ ..........+..+++|++|++++|....... ..+..+..+++|+.|
T Consensus 209 -------l------------~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p-------------~~~~~~~~~~~L~~L 256 (310)
T 4glp_A 209 -------M------------ETPTGVCAALAAAGVQPHSLDLSHNSLRATVN-------------PSAPRCMWSSALNSL 256 (310)
T ss_dssp -------C------------CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC-------------SCCSSCCCCTTCCCE
T ss_pred -------C------------CchHHHHHHHHhcCCCCCEEECCCCCCCccch-------------hhHHhccCcCcCCEE
Confidence 0 00011111123556788888888777522100 001122223688888
Q ss_pred EEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCCCCCCCCCCceeeecCCC
Q 044195 788 TITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLPSVGQLPVLKHLEMRGMD 841 (1024)
Q Consensus 788 ~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 841 (1024)
++++|.+..+|..+ +++|+.|++++|.. +.+|.+..+++|+.|++++|+
T Consensus 257 ~Ls~N~l~~lp~~~----~~~L~~L~Ls~N~l-~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 257 NLSFAGLEQVPKGL----PAKLRVLDLSSNRL-NRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp ECCSSCCCSCCSCC----CSCCSCEECCSCCC-CSCCCTTSCCCCSCEECSSTT
T ss_pred ECCCCCCCchhhhh----cCCCCEEECCCCcC-CCCchhhhCCCccEEECcCCC
Confidence 88888887777665 36788888888864 344556777888888887764
No 95
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.48 E-value=3.9e-13 Score=143.84 Aligned_cols=197 Identities=19% Similarity=0.178 Sum_probs=115.2
Q ss_pred cCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCC-CCCCCCCCceeeecCCCCceEeccccccCCCC
Q 044195 778 LKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLP-SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCS 856 (1024)
Q Consensus 778 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 856 (1024)
+..+++++.++++++....+|..+ .++++.|++++|......+ .+..+++|++|++++|. ++.++..
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~----~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~------- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD------- 73 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC----CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-------
T ss_pred ccccCCccEEECCCCCCCcCCCCC----CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-------
Confidence 344566777777777777777544 3567777777776443322 46667777777777653 3332211
Q ss_pred CCCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCcccCCCCCCCccEEEEecccCccccCCCCCCcC
Q 044195 857 APFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLPERLLLLEKLVIQSCKQLLVTIQCLPALS 936 (1024)
Q Consensus 857 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~L~~L~l~~c~~l~~~l~~l~~L~ 936 (1024)
..+++|++|+++++ .+..+.. .+ .. +++|+.|++++| .++ .+| +..+..+++|+
T Consensus 74 ~~l~~L~~L~Ls~N-~l~~l~~-~~-~~----l~~L~~L~l~~N-~l~-~l~-----------------~~~~~~l~~L~ 127 (290)
T 1p9a_G 74 GTLPVLGTLDLSHN-QLQSLPL-LG-QT----LPALTVLDVSFN-RLT-SLP-----------------LGALRGLGELQ 127 (290)
T ss_dssp SCCTTCCEEECCSS-CCSSCCC-CT-TT----CTTCCEEECCSS-CCC-CCC-----------------SSTTTTCTTCC
T ss_pred CCCCcCCEEECCCC-cCCcCch-hh-cc----CCCCCEEECCCC-cCc-ccC-----------------HHHHcCCCCCC
Confidence 12455555555542 2222111 01 11 455555555554 344 222 13466677777
Q ss_pred EEEEccCCCccccCC---CCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCCCCcccccccccccCCCCCCEE
Q 044195 937 ELQIRGCRRVVFSSP---IDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSETRLLQDIRSLNRL 1013 (1024)
Q Consensus 937 ~L~l~~~~~l~~~~~---~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l~~L~~L 1013 (1024)
+|++++|. +..++. ..+++|+.|++++| .++.++...+.++++|+.|++++| .++.+ |..+..+++|+.|
T Consensus 128 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~i----p~~~~~~~~L~~l 200 (290)
T 1p9a_G 128 ELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTI----PKGFFGSHLLPFA 200 (290)
T ss_dssp EEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCC----CTTTTTTCCCSEE
T ss_pred EEECCCCC-CCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCcc----ChhhcccccCCeE
Confidence 77777776 444443 34567777777764 456666666677777888887777 56666 5666677777777
Q ss_pred eeeCCC
Q 044195 1014 HISRCP 1019 (1024)
Q Consensus 1014 ~l~~c~ 1019 (1024)
+++++|
T Consensus 201 ~L~~Np 206 (290)
T 1p9a_G 201 FLHGNP 206 (290)
T ss_dssp ECCSCC
T ss_pred EeCCCC
Confidence 777665
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.48 E-value=6.8e-13 Score=146.60 Aligned_cols=214 Identities=14% Similarity=0.100 Sum_probs=147.0
Q ss_pred CCCccEEEEEecCCCCCCcc-cCCCCCCCceEEEEecCCCCCCCC--CCCCCCCCceeeecCCCCceEeccccccCCCCC
Q 044195 781 HQKLEELTITGYGGTKFPIW-LGDFPFSKLVSLKFEYCGMCTSLP--SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSA 857 (1024)
Q Consensus 781 ~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 857 (1024)
+++++.|+|++|.+..+|.. +. .+++|++|+|++|...+.++ .+.++++|..+.+.+++.+..++...+..
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~---- 102 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN---- 102 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSST--TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCC----
T ss_pred CCCCCEEEccCCcCCCcCHHHHc--CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhh----
Confidence 35788888888888888764 33 37888888888888766655 46778888776666666777775544333
Q ss_pred CCCCcceeeccccccccccccccccccccccCcccceeeeccCcCCcccCCC----CC-CCccEEEEeccc--CccccCC
Q 044195 858 PFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLPE----RL-LLLEKLVIQSCK--QLLVTIQ 930 (1024)
Q Consensus 858 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~----~l-~~L~~L~l~~c~--~l~~~l~ 930 (1024)
+++|++|+++++ .+.......... ..++..|++.++..+. .+|. .+ ..++.|++++|. .++....
T Consensus 103 -l~~L~~L~l~~n-~l~~~~~~~~~~-----~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f 174 (350)
T 4ay9_X 103 -LPNLQYLLISNT-GIKHLPDVHKIH-----SLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174 (350)
T ss_dssp -CTTCCEEEEEEE-CCSSCCCCTTCC-----BSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCEECTTSS
T ss_pred -cccccccccccc-ccccCCchhhcc-----cchhhhhhhccccccc-cccccchhhcchhhhhhccccccccCCChhhc
Confidence 788888888873 344333322222 4567778887776776 4552 22 457778888774 3444455
Q ss_pred CCCCcCEEEEccCCCccccCCC---CCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCCCCcccccccccccCC
Q 044195 931 CLPALSELQIRGCRRVVFSSPI---DFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSETRLLQDI 1007 (1024)
Q Consensus 931 ~l~~L~~L~l~~~~~l~~~~~~---~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l 1007 (1024)
..++|++|++.+|..++.++.. .+++|+.|+++++ .++.+|.. .+.+|+.|.+.+|.+++.+ | .+.++
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~---~~~~L~~L~~l~~~~l~~l----P-~l~~l 245 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY---GLENLKKLRARSTYNLKKL----P-TLEKL 245 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS---SCTTCCEEECTTCTTCCCC----C-CTTTC
T ss_pred cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh---hhccchHhhhccCCCcCcC----C-CchhC
Confidence 5677888888877777777653 4568888888874 57777753 3567777888888888888 4 47788
Q ss_pred CCCCEEeeeC
Q 044195 1008 RSLNRLHISR 1017 (1024)
Q Consensus 1008 ~~L~~L~l~~ 1017 (1024)
++|+.+++.+
T Consensus 246 ~~L~~l~l~~ 255 (350)
T 4ay9_X 246 VALMEASLTY 255 (350)
T ss_dssp CSCCEEECSC
T ss_pred cChhhCcCCC
Confidence 8888888754
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=7.9e-15 Score=161.79 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=102.7
Q ss_pred ceeEEEEEccCCCCCcccccccCC--CCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCccc--CCcccc
Q 044195 539 SLRHFSYIRGECDGGTRFDFIRGV--QQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIID--LPNEIG 614 (1024)
Q Consensus 539 ~~r~ls~~~~~~~~~~~~~~~~~~--~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~--lp~~l~ 614 (1024)
..+++.+..+... ...+..+ ++++.|.+.++. +... +..+..+++|++|+|++| .+.. +|..+.
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~------l~~~-~~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~ 115 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSF------MDQP-LAEHFSPFRVQHMDLSNS-VIEVSTLHGILS 115 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCE------ECSC-CCSCCCCBCCCEEECTTC-EECHHHHHHHHT
T ss_pred hheeeccccccCC----HHHHHhhhhccceEEEcCCcc------cccc-chhhccCCCCCEEEccCC-CcCHHHHHHHHh
Confidence 3556665543221 2334444 788999887764 2222 333668999999999999 5653 778889
Q ss_pred CCCCCcEeeccCCCcc-ccCcccccCCCCcEEecCCCcccc--ccccccCCCCcccEEeccCCccccc--cCccCCCCC-
Q 044195 615 NLKHLRFLNLSRTNIQ-ILPQSINSLYNLHTVLLEDCRRLK--KLCKDMGNLTKLHHLRNSNVHSLEE--MPKGFGKLT- 688 (1024)
Q Consensus 615 ~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~--~p~~i~~l~- 688 (1024)
.+++|++|+|++|.++ ..|..++.+++|++|++++|..+. .+|..+.++++|++|++++|..+.. ++..++.++
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 195 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence 9999999999999988 678889999999999999996565 3777788999999999999932443 333344444
Q ss_pred CCCcc
Q 044195 689 CLTTL 693 (1024)
Q Consensus 689 ~L~~L 693 (1024)
+|++|
T Consensus 196 ~L~~L 200 (336)
T 2ast_B 196 TITQL 200 (336)
T ss_dssp TCCEE
T ss_pred CCCEE
Confidence 44443
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.45 E-value=2.5e-15 Score=169.03 Aligned_cols=85 Identities=9% Similarity=0.093 Sum_probs=44.9
Q ss_pred ccCCCCceEEecCCCCCCCCCchhhhhhh----hhCCCCceEEEEeCCCCCcc----cCCccc-------cCCCCCcEee
Q 044195 559 IRGVQQLRTFLPMKLSDYGGDYLAWSVLQ----LLLDLPRLRVFSLCGYCNII----DLPNEI-------GNLKHLRFLN 623 (1024)
Q Consensus 559 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~----~l~~l~~L~~L~L~~~~~l~----~lp~~l-------~~l~~L~~L~ 623 (1024)
+..+++|+.|.+.++. +....+. .+..+++|++|+|++| .+. .+|..+ .++++|++|+
T Consensus 28 l~~~~~L~~L~L~~n~------i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNT------IGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHHCSCCCEEECTTSE------ECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HhcCCCccEEECCCCC------CCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 3445566666665543 3333222 2445666666666655 222 223222 4556666666
Q ss_pred ccCCCccc-----cCcccccCCCCcEEecCCC
Q 044195 624 LSRTNIQI-----LPQSINSLYNLHTVLLEDC 650 (1024)
Q Consensus 624 L~~~~i~~-----lp~~i~~L~~L~~L~l~~~ 650 (1024)
|++|.+.. +|..+.++++|++|++++|
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence 66666553 4555566666666666665
No 99
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=1.8e-11 Score=137.39 Aligned_cols=290 Identities=13% Similarity=0.002 Sum_probs=179.7
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhh----cc--CCceEEEEecCCC-CHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQ----RR--FQIKAWTFVSEDF-NVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~----~~--f~~~~wv~~~~~~-~~~ 253 (1024)
..++||+++++++..++.... .+...+.+.|+|++|+|||++|+.+++..... .. ....+|+++.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV--KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH--TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 569999999999998886532 12345689999999999999999999832111 01 3356788877766 888
Q ss_pred HHHHHHHHhccCCCC--CCCcHHHHHHHHHHHhCCCceeEEeeccCCCC----HHH-HHHhhcCCCCCCCCcEEEEEcCC
Q 044195 254 RVTKSILKSITNDQS--KDDDLNWVQEKLKKQLSGKKFLLVLDDVWNEN----YEY-WSIFSRPFGAGAPGSKIVVTTRN 326 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~----~~~-~~~l~~~~~~~~~gs~ilvTtR~ 326 (1024)
.++..++.++.+... .......+...+.+.+..++.+|||||++.-. ... ...+.... .+..||+||+.
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~ 173 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISND 173 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSS
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECC
Confidence 888888888743321 12334566677777787766699999995421 122 33333332 57789999987
Q ss_pred chhhhcc------CCccceecCCCChHhHHHHHHhhhcC-CCCCCCCccHHHHHHHHHHHcC---CChH-HHHHHHhh--
Q 044195 327 LRVTVNM------GADQAYQLKELSNDDCLCLLTQISLG-TGDFNIHPSLKEVGEKIVMKCK---GLPL-AAKTLGGL-- 393 (1024)
Q Consensus 327 ~~~~~~~------~~~~~~~l~~L~~~ea~~lf~~~a~~-~~~~~~~~~~~~~~~~i~~~~~---g~PL-ai~~~~~~-- 393 (1024)
......+ .-...+.+++++.++..++|...+.. -......+ +..+.|++.++ |.|. |+..+...
T Consensus 174 ~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 174 INVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp TTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 5321111 11238999999999999999987431 11112222 55667888887 9887 44443222
Q ss_pred hc---CCCChhHHHHHHhccccCCCCCCCChhhHHHhhhcCCChhHHHHHhhhccCCCCceeCHHHHHHHHHhcCCcccC
Q 044195 394 LR---GKHDPRDWEFVLNNDICNLPEENCNIIPALGVSCHFLPPQLKQCFAYCSLFPKGYEFQEEEIISLWAAEGFLHQE 470 (1024)
Q Consensus 394 l~---~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~~~gli~~~ 470 (1024)
+. ..-+.+.+..++.... ...+..+++.|+++.+..+..++....+..+. +.....-...| ..
T Consensus 251 ~a~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~-- 316 (384)
T 2qby_B 251 LASGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK-- 316 (384)
T ss_dssp HTTSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC--
T ss_pred HhcCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC--
Confidence 22 1235566766665421 23566778899988888777676611101111 11111111222 11
Q ss_pred CCCccHHHHHHHHHHHHHhcCCcccc
Q 044195 471 NSGRKMEDLGREFVQELLSRSFFQRS 496 (1024)
Q Consensus 471 ~~~~~~~~~~~~~~~~Lv~~~l~~~~ 496 (1024)
........++++.|...++++..
T Consensus 317 ---~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 ---PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ---CCCHHHHHHHHHHHHhCCCEEEE
Confidence 11234577889999999999874
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.41 E-value=2.3e-14 Score=161.18 Aligned_cols=242 Identities=20% Similarity=0.164 Sum_probs=148.7
Q ss_pred hhhhCCCCceEEEEeCCCCCccc-----CCccccCCCCCcEeeccCCCcc----ccCccc-------ccCCCCcEEecCC
Q 044195 586 LQLLLDLPRLRVFSLCGYCNIID-----LPNEIGNLKHLRFLNLSRTNIQ----ILPQSI-------NSLYNLHTVLLED 649 (1024)
Q Consensus 586 ~~~l~~l~~L~~L~L~~~~~l~~-----lp~~l~~l~~L~~L~L~~~~i~----~lp~~i-------~~L~~L~~L~l~~ 649 (1024)
...+..+++|++|+|++| .+.. ++..+.++++|++|+|++|.+. .+|..+ ..+++|++|++++
T Consensus 25 ~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp SHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 344567788888888888 4544 3345677888888888886544 334444 6788888888888
Q ss_pred Ccccc----ccccccCCCCcccEEeccCCccccc-----cCccCCCC---------CCCCccCceeeCCCCCccc---cc
Q 044195 650 CRRLK----KLCKDMGNLTKLHHLRNSNVHSLEE-----MPKGFGKL---------TCLTTLCRFVVGKDSGSAL---RE 708 (1024)
Q Consensus 650 ~~~l~----~lp~~i~~L~~L~~L~l~~~~~l~~-----~p~~i~~l---------~~L~~L~~~~~~~~~~~~~---~~ 708 (1024)
|.... .+|..+.++++|++|++++|. +.. ++..+..+ ++|++|....+........ ..
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 73322 367777888888888888887 432 22223333 6777775443322211111 23
Q ss_pred ccCcccCCCceEeccCCCCCCcccchhh-hcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEE
Q 044195 709 LKSLTNLQGTLEISSLENVKCVGDAIEA-QLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEEL 787 (1024)
Q Consensus 709 l~~L~~L~~~L~i~~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L 787 (1024)
+..+++|+ .|.+............+.. .+..+++|+.|++++|.... ......+..+..+++|+.|
T Consensus 183 l~~~~~L~-~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~------------~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 183 FQSHRLLH-TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH------------LGSSALAIALKSWPNLREL 249 (386)
T ss_dssp HHHCTTCC-EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH------------HHHHHHHHHGGGCTTCCEE
T ss_pred HHhCCCcC-EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc------------HHHHHHHHHHccCCCcCEE
Confidence 44556666 6666544221101111222 56777888888888887510 0113445567778888888
Q ss_pred EEEecCCCCC-----CcccCCCCCCCceEEEEecCCCCC----CCC-CC-CCCCCCceeeecCCCC
Q 044195 788 TITGYGGTKF-----PIWLGDFPFSKLVSLKFEYCGMCT----SLP-SV-GQLPVLKHLEMRGMDR 842 (1024)
Q Consensus 788 ~l~~~~~~~~-----p~~~~~~~l~~L~~L~L~~~~~~~----~l~-~l-~~l~~L~~L~L~~~~~ 842 (1024)
++++|.+... |.++....+++|+.|+|++|.... .+| .+ .++|+|++|++++|+.
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 8888876543 444321236788888888887554 244 33 4578899999888753
No 101
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.40 E-value=9.1e-12 Score=140.18 Aligned_cols=291 Identities=16% Similarity=0.100 Sum_probs=180.1
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhcc------CCceEEEEecCCCCHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRR------FQIKAWTFVSEDFNVFR 254 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~------f~~~~wv~~~~~~~~~~ 254 (1024)
..++||+.+++++..++.... .....+.+.|+|++|+||||+|+++++. .... -...+|+++....+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 569999999999999886532 1234568999999999999999999973 2221 12456888888888889
Q ss_pred HHHHHHHhccCCCCC-CCcHHHHHHHHHHHh--CCCceeEEeeccCCCCH-----HHHHHhhcCCCCC--CCCcEEEEEc
Q 044195 255 VTKSILKSITNDQSK-DDDLNWVQEKLKKQL--SGKKFLLVLDDVWNENY-----EYWSIFSRPFGAG--APGSKIVVTT 324 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l--~~~~~LlVlDd~~~~~~-----~~~~~l~~~~~~~--~~gs~ilvTt 324 (1024)
++..++.+++..... ......+...+.+.+ .+++.+||||+++.-.. .....+....... ..+..+|+||
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 999999988654332 233555566666666 35688999999955221 2222222222211 3456788888
Q ss_pred CCchhhhcc-----C--CccceecCCCChHhHHHHHHhhhc---CCCCCCCCccHHHHHHHHHHHcC---CChH-HHHHH
Q 044195 325 RNLRVTVNM-----G--ADQAYQLKELSNDDCLCLLTQISL---GTGDFNIHPSLKEVGEKIVMKCK---GLPL-AAKTL 390 (1024)
Q Consensus 325 R~~~~~~~~-----~--~~~~~~l~~L~~~ea~~lf~~~a~---~~~~~~~~~~~~~~~~~i~~~~~---g~PL-ai~~~ 390 (1024)
+.......+ . ....+.+++++.++..+++...+. ... ...+ +..+.|++.++ |.|- ++..+
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPG--VLDP---DVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTT--TBCS---SHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCC--CCCH---HHHHHHHHHHHHhccCHHHHHHHH
Confidence 765322111 1 124789999999999999987642 221 1222 45566778887 9994 33333
Q ss_pred Hhhhc-----C--CCChhHHHHHHhccccCCCCCCCChhhHHHhhhcCCChhHHHHHhhhc-cCCCCceeCHHHHHHHHH
Q 044195 391 GGLLR-----G--KHDPRDWEFVLNNDICNLPEENCNIIPALGVSCHFLPPQLKQCFAYCS-LFPKGYEFQEEEIISLWA 462 (1024)
Q Consensus 391 ~~~l~-----~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~-~fp~~~~i~~~~li~~w~ 462 (1024)
..... + .-+.+.+..++... ....+.-++..|+++.+..+..++ ++.....+....+.+...
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 22211 1 13455666655432 122456677899998887776666 443323455554433322
Q ss_pred ----hcCCcccCCCCccHHHHHHHHHHHHHhcCCcccc
Q 044195 463 ----AEGFLHQENSGRKMEDLGREFVQELLSRSFFQRS 496 (1024)
Q Consensus 463 ----~~gli~~~~~~~~~~~~~~~~~~~Lv~~~l~~~~ 496 (1024)
..| .. ......+..+++.|...++++..
T Consensus 320 ~~~~~~~-~~-----~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 320 ELTSTLG-LE-----HVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHTT-CC-----CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhcC-CC-----CCCHHHHHHHHHHHHhCCCeEEE
Confidence 222 11 11245677889999999999874
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.39 E-value=1.6e-12 Score=136.16 Aligned_cols=172 Identities=21% Similarity=0.265 Sum_probs=109.9
Q ss_pred CceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCc-ccccCCCCcEEecCCCccccccc-cccCCCCcccEEe
Q 044195 593 PRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQ-SINSLYNLHTVLLEDCRRLKKLC-KDMGNLTKLHHLR 670 (1024)
Q Consensus 593 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~ 670 (1024)
...++++++++ .+..+|..+. .+|++|+|++|.+..++. .+.++++|++|++++| .+..++ ..+..+++|++|+
T Consensus 14 ~~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEE
Confidence 35677888888 7888887765 588999999998887654 5888899999999888 555554 4478888899999
Q ss_pred ccCCccccccCcc-CCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEE
Q 044195 671 NSNVHSLEEMPKG-FGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVL 749 (1024)
Q Consensus 671 l~~~~~l~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 749 (1024)
+++|. +..+|.. ++.+++|+.| ++
T Consensus 90 L~~n~-l~~~~~~~~~~l~~L~~L------------------------------------------------------~L 114 (251)
T 3m19_A 90 LANNQ-LASLPLGVFDHLTQLDKL------------------------------------------------------YL 114 (251)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEE------------------------------------------------------EC
T ss_pred CCCCc-ccccChhHhcccCCCCEE------------------------------------------------------Ec
Confidence 88887 6555532 3444444443 33
Q ss_pred EecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCc-ccCCCCCCCceEEEEecCCCCCCCC-CCC
Q 044195 750 RWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPI-WLGDFPFSKLVSLKFEYCGMCTSLP-SVG 827 (1024)
Q Consensus 750 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l~-~l~ 827 (1024)
++|....++ ...+..+++|+.|++++|.+..+|. .+. .+++|+.|+|++|......+ .+.
T Consensus 115 ~~N~l~~~~----------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~ 176 (251)
T 3m19_A 115 GGNQLKSLP----------------SGVFDRLTKLKELRLNTNQLQSIPAGAFD--KLTNLQTLSLSTNQLQSVPHGAFD 176 (251)
T ss_dssp CSSCCCCCC----------------TTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTT
T ss_pred CCCcCCCcC----------------hhHhccCCcccEEECcCCcCCccCHHHcC--cCcCCCEEECCCCcCCccCHHHHh
Confidence 333221000 1123344556666666666555554 233 26677777777776444333 466
Q ss_pred CCCCCceeeecCCC
Q 044195 828 QLPVLKHLEMRGMD 841 (1024)
Q Consensus 828 ~l~~L~~L~L~~~~ 841 (1024)
.+++|+.|++++|+
T Consensus 177 ~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 177 RLGKLQTITLFGNQ 190 (251)
T ss_dssp TCTTCCEEECCSCC
T ss_pred CCCCCCEEEeeCCc
Confidence 67777777777664
No 103
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.38 E-value=3.1e-11 Score=135.84 Aligned_cols=297 Identities=14% Similarity=0.040 Sum_probs=185.9
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccC-CceEEEEecCCCCHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF-QIKAWTFVSEDFNVFRVTKSI 259 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 259 (1024)
..++||+.+++++..++........+..+.+.|+|++|+||||+|+.+++ ...... ...+|++++...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 56999999999999998763110112334899999999999999999997 333221 346788878888888999999
Q ss_pred HHhccCCCCC-CCcHHHHHHHHHHHhC--CCceeEEeeccCCCCHHHHHHhhcCCCCCC----CCcEEEEEcCCchhhhc
Q 044195 260 LKSITNDQSK-DDDLNWVQEKLKKQLS--GKKFLLVLDDVWNENYEYWSIFSRPFGAGA----PGSKIVVTTRNLRVTVN 332 (1024)
Q Consensus 260 l~~l~~~~~~-~~~~~~~~~~l~~~l~--~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~----~gs~ilvTtR~~~~~~~ 332 (1024)
+..++..... ......+...+...+. +++.+||||+++..+......+...+.... .+..||+||+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 9888654322 2345555566665553 668899999997766556666655543221 36678888876543322
Q ss_pred cC-------CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHc---------CCChHHHHHHHhhhc-
Q 044195 333 MG-------ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKC---------KGLPLAAKTLGGLLR- 395 (1024)
Q Consensus 333 ~~-------~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~---------~g~PLai~~~~~~l~- 395 (1024)
+. ....+.+++++.++..+++...+..... ...-..+..+.|++.+ +|.|..+..+.....
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 21 1236999999999999999876432000 0011236677889999 798755444432211
Q ss_pred -----CC--CChhHHHHHHhccccCCCCCCCChhhHHHhhhcCCChhHHHHHhhhccCC---CCceeCHHHHHHHHHh--
Q 044195 396 -----GK--HDPRDWEFVLNNDICNLPEENCNIIPALGVSCHFLPPQLKQCFAYCSLFP---KGYEFQEEEIISLWAA-- 463 (1024)
Q Consensus 396 -----~~--~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp---~~~~i~~~~li~~w~~-- 463 (1024)
+. -+.+....+..... ...+.-.+..|+.+.+..+..++.+. .+..+....+...+..
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 11 22333333333211 11223345678888888887777654 2225666666555433
Q ss_pred --cCCcccCCCCccHHHHHHHHHHHHHhcCCccccC
Q 044195 464 --EGFLHQENSGRKMEDLGREFVQELLSRSFFQRSS 497 (1024)
Q Consensus 464 --~gli~~~~~~~~~~~~~~~~~~~Lv~~~l~~~~~ 497 (1024)
.|... .+ ......++++|...+++....
T Consensus 323 ~~~~~~~-----~~-~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 323 EEYGERP-----RV-HSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHTTCCC-----CC-HHHHHHHHHHHHHTTSSEEEE
T ss_pred HHcCCCC-----CC-HHHHHHHHHHHHhCCCeEEee
Confidence 22111 11 344678899999999998753
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=5e-13 Score=157.24 Aligned_cols=171 Identities=20% Similarity=0.213 Sum_probs=111.9
Q ss_pred CCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcccEE
Q 044195 590 LDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHL 669 (1024)
Q Consensus 590 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 669 (1024)
..+++|+.|+|++| .+..+| .+..+++|++|+|++|.+..+|+ +..+++|+.|+|++| .+..+| .+..+++|++|
T Consensus 40 ~~L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred hcCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 45666777788777 577776 47778888888888888877766 777888888888887 566665 57778888888
Q ss_pred eccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEE
Q 044195 670 RNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVL 749 (1024)
Q Consensus 670 ~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 749 (1024)
++++|. +..++ .++.+++|+.|....+ .+. . + ..+..+++|+.|+|
T Consensus 115 ~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N---------------~l~---------~-------l-~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 115 SLEHNG-ISDIN-GLVHLPQLESLYLGNN---------------KIT---------D-------I-TVLSRLTKLDTLSL 160 (605)
T ss_dssp ECTTSC-CCCCG-GGGGCTTCSEEECCSS---------------CCC---------C-------C-GGGGSCTTCSEEEC
T ss_pred EecCCC-CCCCc-cccCCCccCEEECCCC---------------ccC---------C-------c-hhhcccCCCCEEEC
Confidence 888776 55543 3555555555522111 000 0 0 12455677788888
Q ss_pred EecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCC
Q 044195 750 RWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMC 820 (1024)
Q Consensus 750 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~ 820 (1024)
+.|....+ ..+..+++|+.|+|++|.+..+|. +. .+++|+.|+|++|...
T Consensus 161 s~N~l~~~------------------~~l~~l~~L~~L~Ls~N~i~~l~~-l~--~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 161 EDNQISDI------------------VPLAGLTKLQNLYLSKNHISDLRA-LA--GLKNLDVLELFSQECL 210 (605)
T ss_dssp CSSCCCCC------------------GGGTTCTTCCEEECCSSCCCBCGG-GT--TCTTCSEEECCSEEEE
T ss_pred cCCcCCCc------------------hhhccCCCCCEEECcCCCCCCChH-Hc--cCCCCCEEEccCCcCc
Confidence 77765211 115667788888888877776653 33 2777888888777644
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.35 E-value=2.1e-12 Score=138.34 Aligned_cols=169 Identities=21% Similarity=0.219 Sum_probs=97.6
Q ss_pred CCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcccEEe
Q 044195 591 DLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLR 670 (1024)
Q Consensus 591 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 670 (1024)
.+++|++|++++| .+..+|. +..+++|++|++++|.++.+|. +.++++|++|++++| .+..+|. +..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEE
T ss_pred hcCcccEEEccCC-CcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEE
Confidence 4556666666666 5666643 6666677777777776666655 666777777777766 4555543 66667777777
Q ss_pred ccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEE
Q 044195 671 NSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLR 750 (1024)
Q Consensus 671 l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 750 (1024)
+++|. +..++ .++.+++|+.|....+. +. . + ..+..+++|+.|+++
T Consensus 119 L~~n~-i~~~~-~l~~l~~L~~L~l~~n~---------------l~---------~-------~-~~l~~l~~L~~L~L~ 164 (291)
T 1h6t_A 119 LEHNG-ISDIN-GLVHLPQLESLYLGNNK---------------IT---------D-------I-TVLSRLTKLDTLSLE 164 (291)
T ss_dssp CTTSC-CCCCG-GGGGCTTCCEEECCSSC---------------CC---------C-------C-GGGGGCTTCSEEECC
T ss_pred CCCCc-CCCCh-hhcCCCCCCEEEccCCc---------------CC---------c-------c-hhhccCCCCCEEEcc
Confidence 77665 55442 34555555554221110 00 0 0 123445566666666
Q ss_pred ecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCC
Q 044195 751 WCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGM 819 (1024)
Q Consensus 751 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~ 819 (1024)
+|....+ ..+..+++|+.|++++|....+|. +. .+++|+.|++++|..
T Consensus 165 ~N~l~~~------------------~~l~~l~~L~~L~L~~N~i~~l~~-l~--~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 165 DNQISDI------------------VPLAGLTKLQNLYLSKNHISDLRA-LA--GLKNLDVLELFSQEC 212 (291)
T ss_dssp SSCCCCC------------------GGGTTCTTCCEEECCSSCCCBCGG-GT--TCTTCSEEEEEEEEE
T ss_pred CCccccc------------------hhhcCCCccCEEECCCCcCCCChh-hc--cCCCCCEEECcCCcc
Confidence 6654211 115566677777777777666654 33 267777777777753
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.33 E-value=2.1e-12 Score=140.05 Aligned_cols=83 Identities=23% Similarity=0.188 Sum_probs=43.4
Q ss_pred CCccEEEEEecCCCC-CCcccCCCCCCCceEEEEecCCCCCCCCC-----CCCCCCCceeeecCCCCceEeccccccCCC
Q 044195 782 QKLEELTITGYGGTK-FPIWLGDFPFSKLVSLKFEYCGMCTSLPS-----VGQLPVLKHLEMRGMDRVKSVGLEFYGNSC 855 (1024)
Q Consensus 782 ~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-----l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 855 (1024)
++|++|++++|.... .|..+....+++|+.|++++|......+. +..+++|++|++++|.. ..++...+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~---- 165 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSCEQV---- 165 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCTTSC----
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhHHHh----
Confidence 457777777776543 33333102366777777777765443331 23466777777766543 22221111
Q ss_pred CCCCCCcceeecccc
Q 044195 856 SAPFPSLETLCFVNM 870 (1024)
Q Consensus 856 ~~~~~~L~~L~l~~~ 870 (1024)
..+++|++|+++++
T Consensus 166 -~~l~~L~~L~Ls~N 179 (310)
T 4glp_A 166 -RAFPALTSLDLSDN 179 (310)
T ss_dssp -CCCTTCCEEECCSC
T ss_pred -ccCCCCCEEECCCC
Confidence 22556666666654
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.33 E-value=1.2e-12 Score=140.23 Aligned_cols=181 Identities=20% Similarity=0.235 Sum_probs=133.3
Q ss_pred eCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcccEEeccCCccccc
Q 044195 600 LCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEE 679 (1024)
Q Consensus 600 L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~ 679 (1024)
+..+ .+..+. .+..+++|++|++++|.+..+|. +..+++|++|++++| .+..++. +.++++|++|++++|. +..
T Consensus 31 l~~~-~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~ 104 (291)
T 1h6t_A 31 LKKK-SVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKD 104 (291)
T ss_dssp TTCS-CTTSEE-CHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCC
T ss_pred hcCC-Cccccc-chhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCC
Confidence 4444 344432 35678999999999999999865 899999999999998 7777776 9999999999999998 777
Q ss_pred cCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccc
Q 044195 680 MPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISN 759 (1024)
Q Consensus 680 ~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 759 (1024)
+|. ++.+++|+.|....+. +. . + ..+..+++|+.|++++|....
T Consensus 105 ~~~-l~~l~~L~~L~L~~n~---------------i~---------~-------~-~~l~~l~~L~~L~l~~n~l~~--- 148 (291)
T 1h6t_A 105 LSS-LKDLKKLKSLSLEHNG---------------IS---------D-------I-NGLVHLPQLESLYLGNNKITD--- 148 (291)
T ss_dssp GGG-GTTCTTCCEEECTTSC---------------CC---------C-------C-GGGGGCTTCCEEECCSSCCCC---
T ss_pred Chh-hccCCCCCEEECCCCc---------------CC---------C-------C-hhhcCCCCCCEEEccCCcCCc---
Confidence 653 6777777766321110 10 0 0 124556788899998887621
Q ss_pred cccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCCCCCCCCCCceeeecC
Q 044195 760 IRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLPSVGQLPVLKHLEMRG 839 (1024)
Q Consensus 760 l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 839 (1024)
...+..+++|+.|++++|....++. +. .+++|+.|++++|. ++.++.+..+++|+.|++++
T Consensus 149 ---------------~~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 149 ---------------ITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFS 209 (291)
T ss_dssp ---------------CGGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEE
T ss_pred ---------------chhhccCCCCCEEEccCCccccchh-hc--CCCccCEEECCCCc-CCCChhhccCCCCCEEECcC
Confidence 1346677889999999888877766 43 37889999998886 44566788888888888887
Q ss_pred CC
Q 044195 840 MD 841 (1024)
Q Consensus 840 ~~ 841 (1024)
|+
T Consensus 210 n~ 211 (291)
T 1h6t_A 210 QE 211 (291)
T ss_dssp EE
T ss_pred Cc
Confidence 64
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.33 E-value=3.8e-12 Score=147.79 Aligned_cols=178 Identities=17% Similarity=0.217 Sum_probs=116.5
Q ss_pred CceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcccEEecc
Q 044195 593 PRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNS 672 (1024)
Q Consensus 593 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~ 672 (1024)
.+|++|+|++| .+..+|..+. ++|++|+|++|.++.+| ..+++|++|++++| .+..+|. +.+ +|++|+++
T Consensus 59 ~~L~~L~Ls~n-~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSS-CCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCC-CCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence 37888888888 6777887663 78888888888888888 45788888888888 6666777 655 88888888
Q ss_pred CCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcEEEEec
Q 044195 673 NVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEALVLRWC 752 (1024)
Q Consensus 673 ~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 752 (1024)
+|. +..+|. .+++|+.|....+. +. . ++. .+++|+.|++++|
T Consensus 129 ~N~-l~~lp~---~l~~L~~L~Ls~N~---------------l~---------~-------lp~---~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 129 NNQ-LTMLPE---LPALLEYINADNNQ---------------LT---------M-------LPE---LPTSLEVLSVRNN 170 (571)
T ss_dssp SSC-CSCCCC---CCTTCCEEECCSSC---------------CS---------C-------CCC---CCTTCCEEECCSS
T ss_pred CCc-CCCCCC---cCccccEEeCCCCc---------------cC---------c-------CCC---cCCCcCEEECCCC
Confidence 887 766776 45566655321110 00 0 000 2356777777777
Q ss_pred CCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCCCCCCc-------eEEEEecCCCCCCCC-
Q 044195 753 NRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKL-------VSLKFEYCGMCTSLP- 824 (1024)
Q Consensus 753 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L-------~~L~L~~~~~~~~l~- 824 (1024)
....++ . +. ++|+.|++++|.+..+|. +. .+| +.|+|++|... .+|
T Consensus 171 ~L~~lp-----------------~-l~--~~L~~L~Ls~N~L~~lp~-~~----~~L~~~~~~L~~L~Ls~N~l~-~lp~ 224 (571)
T 3cvr_A 171 QLTFLP-----------------E-LP--ESLEALDVSTNLLESLPA-VP----VRNHHSEETEIFFRCRENRIT-HIPE 224 (571)
T ss_dssp CCSCCC-----------------C-CC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCC-CCCG
T ss_pred CCCCcc-----------------h-hh--CCCCEEECcCCCCCchhh-HH----HhhhcccccceEEecCCCcce-ecCH
Confidence 652211 1 22 677777777777777776 32 155 77888777644 445
Q ss_pred CCCCCCCCceeeecCCCCce
Q 044195 825 SVGQLPVLKHLEMRGMDRVK 844 (1024)
Q Consensus 825 ~l~~l~~L~~L~L~~~~~l~ 844 (1024)
.+..+++|+.|+|++|+...
T Consensus 225 ~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 225 NILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp GGGGSCTTEEEECCSSSCCH
T ss_pred HHhcCCCCCEEEeeCCcCCC
Confidence 46667778888887775433
No 109
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=2.4e-11 Score=136.70 Aligned_cols=294 Identities=13% Similarity=0.072 Sum_probs=175.1
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccC---CceEEEEecCCCCHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF---QIKAWTFVSEDFNVFRVTK 257 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~ 257 (1024)
..|+||+.+++.+.+++.... .+...+.+.|+|++|+||||||+.+++ .....+ ...+|+++....+...++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~--~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLY--REEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGG--GTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHH--cCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 569999999999999886531 123456899999999999999999998 333332 2567888777777788888
Q ss_pred HHHHhccCCCCC-CCcHHHHHHHHHHHhC--CCceeEEeeccCCCC----HHHHHHhhcCCCC-CCCCcEEEEEcCCchh
Q 044195 258 SILKSITNDQSK-DDDLNWVQEKLKKQLS--GKKFLLVLDDVWNEN----YEYWSIFSRPFGA-GAPGSKIVVTTRNLRV 329 (1024)
Q Consensus 258 ~il~~l~~~~~~-~~~~~~~~~~l~~~l~--~~~~LlVlDd~~~~~----~~~~~~l~~~~~~-~~~gs~ilvTtR~~~~ 329 (1024)
.++.+++..... ..........+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+....
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 888877554322 2234555556666554 458999999995421 2233333222211 2245677888876543
Q ss_pred hhccC-------CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcC---CChHHHHHH-Hhhh--c-
Q 044195 330 TVNMG-------ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCK---GLPLAAKTL-GGLL--R- 395 (1024)
Q Consensus 330 ~~~~~-------~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~---g~PLai~~~-~~~l--~- 395 (1024)
...+. ....+.+++++.++..+++...+..... ...-..+..+.|++.++ |.|..+..+ .... .
T Consensus 176 ~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 176 VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 22221 1247999999999999999875421110 01112355667777777 999844333 2221 1
Q ss_pred --C--CCChhHHHHHHhccccCCCCCCCChhhHHHhhhcCCChhHHHHHhhhccCCC-C-ceeCHHHHHHHHH----hcC
Q 044195 396 --G--KHDPRDWEFVLNNDICNLPEENCNIIPALGVSCHFLPPQLKQCFAYCSLFPK-G-YEFQEEEIISLWA----AEG 465 (1024)
Q Consensus 396 --~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~-~-~~i~~~~li~~w~----~~g 465 (1024)
+ .-+.+.+..++... ....+.-.+..+|++.+..+..++...+ + ..+....+.+... .-|
T Consensus 254 ~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g 323 (386)
T 2qby_A 254 RMKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG 323 (386)
T ss_dssp HTTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT
T ss_pred hcCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC
Confidence 1 12445555554432 1234566778899888877776664322 2 2234433322221 112
Q ss_pred CcccCCCCccHHHHHHHHHHHHHhcCCcccc
Q 044195 466 FLHQENSGRKMEDLGREFVQELLSRSFFQRS 496 (1024)
Q Consensus 466 li~~~~~~~~~~~~~~~~~~~Lv~~~l~~~~ 496 (1024)
. . .........+++.|...++++..
T Consensus 324 ~-~-----~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 324 V-E-----AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp C-C-----CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred C-C-----CCCHHHHHHHHHHHHhCCCEEEE
Confidence 1 1 01123467789999999999763
No 110
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.30 E-value=3e-11 Score=126.50 Aligned_cols=174 Identities=17% Similarity=0.177 Sum_probs=101.6
Q ss_pred CCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCC-CCCCCCCCceeeecCCCCceEeccccccCCCCCCCC
Q 044195 782 QKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLP-SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFP 860 (1024)
Q Consensus 782 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 860 (1024)
.+.+.++++++....+|..+ .++++.|++++|......+ .+..+++|++|++++|. +..++...+ ..++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-----~~l~ 83 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI----PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVF-----DDLT 83 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC----CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTT-----TTCT
T ss_pred CCCeEEecCCCCccccCCCC----CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHh-----ccCC
Confidence 35677888888888888765 3578899998887655444 57788888888888763 332222111 1244
Q ss_pred CcceeeccccccccccccccccccccccCcccceeeeccCcCCcccCCCCCCCccEEEEecccCccccCCCCCCcCEEEE
Q 044195 861 SLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLPERLLLLEKLVIQSCKQLLVTIQCLPALSELQI 940 (1024)
Q Consensus 861 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~L~~L~l~~c~~l~~~l~~l~~L~~L~l 940 (1024)
+|++|+++++ .+.......+.. +++|++|++++| .++ .+| +..+..+++|++|++
T Consensus 84 ~L~~L~L~~n-~l~~~~~~~~~~-----l~~L~~L~L~~N-~l~-~~~-----------------~~~~~~l~~L~~L~L 138 (251)
T 3m19_A 84 ELGTLGLANN-QLASLPLGVFDH-----LTQLDKLYLGGN-QLK-SLP-----------------SGVFDRLTKLKELRL 138 (251)
T ss_dssp TCCEEECTTS-CCCCCCTTTTTT-----CTTCCEEECCSS-CCC-CCC-----------------TTTTTTCTTCCEEEC
T ss_pred cCCEEECCCC-cccccChhHhcc-----cCCCCEEEcCCC-cCC-CcC-----------------hhHhccCCcccEEEC
Confidence 4555554442 222222111111 444555555444 333 122 123566777788888
Q ss_pred ccCCCccccCC---CCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCC
Q 044195 941 RGCRRVVFSSP---IDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRA 992 (1024)
Q Consensus 941 ~~~~~l~~~~~---~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~ 992 (1024)
++|. +..++. ..+++|++|++++| .++.++...+.++++|+.|++++|+-
T Consensus 139 s~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 139 NTNQ-LQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred cCCc-CCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCce
Confidence 7776 444433 34567777777764 45556655666777777777777643
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.29 E-value=3.6e-12 Score=149.95 Aligned_cols=176 Identities=23% Similarity=0.264 Sum_probs=120.7
Q ss_pred ccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCccccc
Q 044195 559 IRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINS 638 (1024)
Q Consensus 559 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~ 638 (1024)
+..+++|+.|.+.++. + ..++.+..+++|+.|+|++| .+..+|. +..+++|++|+|++|.+..+| .+..
T Consensus 39 ~~~L~~L~~L~l~~n~------i--~~l~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~ 107 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD------I--KSVQGIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKD 107 (605)
T ss_dssp HHHHTTCCCCBCTTCC------C--CCCTTGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTT
T ss_pred hhcCCCCCEEECcCCC------C--CCChHHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCCCh-hhcc
Confidence 4466777777776654 1 12345778889999999988 6877776 888999999999999888876 5888
Q ss_pred CCCCcEEecCCCccccccccccCCCCcccEEeccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCc
Q 044195 639 LYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGT 718 (1024)
Q Consensus 639 L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 718 (1024)
+++|+.|+|++| .+..+| .+..|++|+.|++++|. +..+ ..++.+++|+.|....+.. .
T Consensus 108 l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l---------------~-- 166 (605)
T 1m9s_A 108 LKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQI---------------S-- 166 (605)
T ss_dssp CTTCCEEECTTS-CCCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCC---------------C--
T ss_pred CCCCCEEEecCC-CCCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcC---------------C--
Confidence 999999999988 666664 58888999999999887 6665 4566666666663221100 0
Q ss_pred eEeccCCCCCCcccchhhhcCCCCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCC
Q 044195 719 LEISSLENVKCVGDAIEAQLNRKVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFP 798 (1024)
Q Consensus 719 L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p 798 (1024)
.+.. +..+++|+.|+|+.|.... ++.+..+++|+.|+|++|.+...|
T Consensus 167 --------------~~~~-l~~l~~L~~L~Ls~N~i~~------------------l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 167 --------------DIVP-LAGLTKLQNLYLSKNHISD------------------LRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp --------------CCGG-GTTCTTCCEEECCSSCCCB------------------CGGGTTCTTCSEEECCSEEEECCC
T ss_pred --------------Cchh-hccCCCCCEEECcCCCCCC------------------ChHHccCCCCCEEEccCCcCcCCc
Confidence 0001 4556677777777766521 134566677777777777665554
Q ss_pred c
Q 044195 799 I 799 (1024)
Q Consensus 799 ~ 799 (1024)
.
T Consensus 214 ~ 214 (605)
T 1m9s_A 214 I 214 (605)
T ss_dssp C
T ss_pred c
Confidence 3
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.28 E-value=1.1e-12 Score=138.07 Aligned_cols=84 Identities=24% Similarity=0.292 Sum_probs=60.3
Q ss_pred CCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcccEEec
Q 044195 592 LPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRN 671 (1024)
Q Consensus 592 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l 671 (1024)
+.++..++++++ .+.+++ .+..+++|++|++++|.++.+| .+..+++|++|++++| .+..+|. +.++++|++|++
T Consensus 18 l~~l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCC-Cccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 444556666666 566666 5677778888888888777777 5777888888888877 6666666 777888888888
Q ss_pred cCCccccccC
Q 044195 672 SNVHSLEEMP 681 (1024)
Q Consensus 672 ~~~~~l~~~p 681 (1024)
++|. +..+|
T Consensus 93 ~~N~-l~~l~ 101 (263)
T 1xeu_A 93 NRNR-LKNLN 101 (263)
T ss_dssp CSSC-CSCCT
T ss_pred CCCc-cCCcC
Confidence 8776 55444
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.27 E-value=9.6e-12 Score=124.78 Aligned_cols=143 Identities=14% Similarity=0.189 Sum_probs=105.7
Q ss_pred cceeEEEEEccCCCCCcccccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCccc-CCccccCC
Q 044195 538 QSLRHFSYIRGECDGGTRFDFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIID-LPNEIGNL 616 (1024)
Q Consensus 538 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~-lp~~l~~l 616 (1024)
..++++.+..+... .++.+..+++|++|.+.++. ...+..+..+++|++|++++| .+.. .|..++.+
T Consensus 44 ~~L~~L~l~~n~i~---~l~~l~~l~~L~~L~l~~n~--------~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l 111 (197)
T 4ezg_A 44 NSLTYITLANINVT---DLTGIEYAHNIKDLTINNIH--------ATNYNPISGLSNLERLRIMGK-DVTSDKIPNLSGL 111 (197)
T ss_dssp HTCCEEEEESSCCS---CCTTGGGCTTCSEEEEESCC--------CSCCGGGTTCTTCCEEEEECT-TCBGGGSCCCTTC
T ss_pred CCccEEeccCCCcc---ChHHHhcCCCCCEEEccCCC--------CCcchhhhcCCCCCEEEeECC-ccCcccChhhcCC
Confidence 45677777766433 33356778888888887764 122346778888888888888 5654 67778888
Q ss_pred CCCcEeeccCCCccc-cCcccccCCCCcEEecCCCccccccccccCCCCcccEEeccCCccccccCccCCCCCCCCccCc
Q 044195 617 KHLRFLNLSRTNIQI-LPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTLCR 695 (1024)
Q Consensus 617 ~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~ 695 (1024)
++|++|++++|.++. .|..+..+++|++|++++|..+..+| .+..+++|++|++++|. +..++ .+..+++|+.|..
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYA 188 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEE
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEe
Confidence 888888888888874 67778888888888888885477776 58888888888888887 76665 6677777777643
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.27 E-value=1.7e-12 Score=144.28 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=53.8
Q ss_pred hhhhhhCCCCceEEEEeCCCCCcccCC-----ccccCCC-CCcEeeccCCCcccc-CcccccC-----CCCcEEecCCCc
Q 044195 584 SVLQLLLDLPRLRVFSLCGYCNIIDLP-----NEIGNLK-HLRFLNLSRTNIQIL-PQSINSL-----YNLHTVLLEDCR 651 (1024)
Q Consensus 584 ~~~~~l~~l~~L~~L~L~~~~~l~~lp-----~~l~~l~-~L~~L~L~~~~i~~l-p~~i~~L-----~~L~~L~l~~~~ 651 (1024)
..+..+...++|++|+|++| .+...+ ..+.+++ +|++|+|++|.+... +..+..+ ++|++|++++|
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n- 90 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN- 90 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-
T ss_pred HHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-
Confidence 33333355555777777777 465554 4455666 677777777766643 4444443 67777777776
Q ss_pred ccccc-ccc----cCCC-CcccEEeccCCcccccc
Q 044195 652 RLKKL-CKD----MGNL-TKLHHLRNSNVHSLEEM 680 (1024)
Q Consensus 652 ~l~~l-p~~----i~~L-~~L~~L~l~~~~~l~~~ 680 (1024)
.+... +.. +..+ ++|++|++++|. +...
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~ 124 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSK 124 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGS
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcH
Confidence 33322 222 3333 677777777776 4443
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.25 E-value=5.1e-11 Score=138.39 Aligned_cols=186 Identities=15% Similarity=0.069 Sum_probs=131.8
Q ss_pred CCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCCCCCCCCCCCCCCceeeecCCCCceEeccccccCCCCCCCCC
Q 044195 782 QKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMCTSLPSVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPS 861 (1024)
Q Consensus 782 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 861 (1024)
.+|+.|++++|....+|..+ +++|+.|+|++|... .+| +.+++|++|++++|. ++.++. + ..+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l----~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~-l~~ip~-l--------~~~ 121 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL----PPQITVLEITQNALI-SLP--ELPASLEYLDACDNR-LSTLPE-L--------PAS 121 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC----CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSC-CSCCCC-C--------CTT
T ss_pred CCccEEEeCCCCCCccCHhH----cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCC-CCCcch-h--------hcC
Confidence 37888888888888888655 468999999888744 666 667889999998874 333443 2 238
Q ss_pred cceeeccccccccccccccccccccccCcccceeeeccCcCCcccCCCCCCCccEEEEeccc--CccccCCCCCCcCEEE
Q 044195 862 LETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCSKLQGTLPERLLLLEKLVIQSCK--QLLVTIQCLPALSELQ 939 (1024)
Q Consensus 862 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~lp~~l~~L~~L~l~~c~--~l~~~l~~l~~L~~L~ 939 (1024)
|+.|+++++ .+..+.. . +++|+.|++++| .++ .+|..+++|+.|++++|. .+|. +. ++|+.|+
T Consensus 122 L~~L~Ls~N-~l~~lp~-----~----l~~L~~L~Ls~N-~l~-~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~ 186 (571)
T 3cvr_A 122 LKHLDVDNN-QLTMLPE-----L----PALLEYINADNN-QLT-MLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALD 186 (571)
T ss_dssp CCEEECCSS-CCSCCCC-----C----CTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEE
T ss_pred CCEEECCCC-cCCCCCC-----c----CccccEEeCCCC-ccC-cCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEE
Confidence 888888874 4444222 2 789999999998 788 588878899999998885 3444 44 7899999
Q ss_pred EccCCCccccCCCCCCCc-------cEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCCCCcccccccccccCC
Q 044195 940 IRGCRRVVFSSPIDFSSL-------KSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSETRLLQDI 1007 (1024)
Q Consensus 940 l~~~~~l~~~~~~~l~~L-------~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l 1007 (1024)
+++|. ++.+|. ...+| +.|++++| .++.+|.... .+++|+.|++++|+--+.+ |..+..+
T Consensus 187 Ls~N~-L~~lp~-~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~-~l~~L~~L~L~~N~l~~~~----p~~l~~l 253 (571)
T 3cvr_A 187 VSTNL-LESLPA-VPVRNHHSEETEIFFRCREN-RITHIPENIL-SLDPTCTIILEDNPLSSRI----RESLSQQ 253 (571)
T ss_dssp CCSSC-CSSCCC-CC--------CCEEEECCSS-CCCCCCGGGG-GSCTTEEEECCSSSCCHHH----HHHHHHH
T ss_pred CcCCC-CCchhh-HHHhhhcccccceEEecCCC-cceecCHHHh-cCCCCCEEEeeCCcCCCcC----HHHHHHh
Confidence 99987 555555 33367 88888874 5677776444 4888999999888544444 4444443
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.25 E-value=8.7e-13 Score=146.61 Aligned_cols=263 Identities=11% Similarity=0.037 Sum_probs=141.3
Q ss_pred EEEeCCCCCcc-cCCccccCCCCCcEeeccCCCccccC-----cccccCC-CCcEEecCCCccccc-cccccCCC-----
Q 044195 597 VFSLCGYCNII-DLPNEIGNLKHLRFLNLSRTNIQILP-----QSINSLY-NLHTVLLEDCRRLKK-LCKDMGNL----- 663 (1024)
Q Consensus 597 ~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~~~i~~lp-----~~i~~L~-~L~~L~l~~~~~l~~-lp~~i~~L----- 663 (1024)
++.|+.| .+. .+|..+....+|++|+|++|.++..+ ..+..++ +|++|++++| .+.. .+..+..+
T Consensus 2 ~~~ls~n-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLH-PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EEECCCC-TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSC
T ss_pred ccccccc-cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccC
Confidence 4677888 555 45665666677999999999999776 5678888 9999999999 5544 34555554
Q ss_pred CcccEEeccCCccccccCcc-----CCCC-CCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhh
Q 044195 664 TKLHHLRNSNVHSLEEMPKG-----FGKL-TCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQ 737 (1024)
Q Consensus 664 ~~L~~L~l~~~~~l~~~p~~-----i~~l-~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~ 737 (1024)
++|++|++++|. +...+.. +..+ ++|+.|....+. ........+...
T Consensus 80 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--------------------------l~~~~~~~l~~~ 132 (362)
T 3goz_A 80 ANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND--------------------------FSSKSSSEFKQA 132 (362)
T ss_dssp TTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC--------------------------GGGSCHHHHHHH
T ss_pred CCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc--------------------------CCcHHHHHHHHH
Confidence 999999999998 6544322 3333 566666332211 101111122223
Q ss_pred cCC-CCCCCcEEEEecCCCCccccccccccchhhHHHHhhccCCCC-CccEEEEEecCCCCCCc-ccCC--CCC-CCceE
Q 044195 738 LNR-KVNLEALVLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQ-KLEELTITGYGGTKFPI-WLGD--FPF-SKLVS 811 (1024)
Q Consensus 738 l~~-~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~p~-~~~~--~~l-~~L~~ 811 (1024)
+.. .++|++|++++|..... ........+..++ +|+.|++++|.....+. .+.. ..+ ++|+.
T Consensus 133 l~~~~~~L~~L~Ls~N~l~~~------------~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~ 200 (362)
T 3goz_A 133 FSNLPASITSLNLRGNDLGIK------------SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTS 200 (362)
T ss_dssp HTTSCTTCCEEECTTSCGGGS------------CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred HHhCCCceeEEEccCCcCCHH------------HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCE
Confidence 333 24677777766654110 0122233333333 67777777766543332 1110 013 46777
Q ss_pred EEEecCCCCCC----CC-CCCC-CCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccc--cccccccccccc
Q 044195 812 LKFEYCGMCTS----LP-SVGQ-LPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQ--EWEEWIPRGFAQ 883 (1024)
Q Consensus 812 L~L~~~~~~~~----l~-~l~~-l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~~ 883 (1024)
|+|++|..... ++ .+.. .++|++|+|++|. +...+..... .....+++|+.|+++++. .+.......+..
T Consensus 201 L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~-~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~ 278 (362)
T 3goz_A 201 LDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLK-LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA 278 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHH-HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHT
T ss_pred EECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHH-HHHhcCCCccEEEeccCCccccCHHHHHHHHH
Confidence 77777753321 11 1222 2477777777663 3332221100 011336677777777643 111100000000
Q ss_pred cccccCcccceeeeccCcCCc
Q 044195 884 EVNEVFPKLRKLSLLRCSKLQ 904 (1024)
Q Consensus 884 ~~~~~~~~L~~L~l~~c~~L~ 904 (1024)
....+++|+.|++++| .+.
T Consensus 279 -~~~~l~~L~~LdL~~N-~l~ 297 (362)
T 3goz_A 279 -AFPNIQKIILVDKNGK-EIH 297 (362)
T ss_dssp -TSTTCCEEEEECTTSC-BCC
T ss_pred -HhccCCceEEEecCCC-cCC
Confidence 0011677888888888 454
No 117
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.24 E-value=1.4e-10 Score=121.41 Aligned_cols=197 Identities=17% Similarity=0.129 Sum_probs=118.4
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (1024)
..++||+..++.+..++.... ..+.+.|+|++|+||||+|+.+++.. ...+... ...+... .. ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~--~~~~~~~-~~~~~~~---~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGL--NCETGIT-ATPCGVC---DN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHH--HCTTCSC-SSCCSCS---HH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHh--cCCCCCC-CCCCccc---HH-HHHHh
Confidence 359999999999999997642 23588999999999999999998732 2211100 0000000 00 00000
Q ss_pred Hhc-----cCCCCCCCcHHHHHHHHHHH-----hCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchh-
Q 044195 261 KSI-----TNDQSKDDDLNWVQEKLKKQ-----LSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRV- 329 (1024)
Q Consensus 261 ~~l-----~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~- 329 (1024)
... ............+. .+.+. ..+++.+|||||++.-....++.+...+.....+..+|+||+....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred ccCCcceEEecCcccccHHHHH-HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 000 00000011111111 12222 1356899999999776666677766655544467788888876432
Q ss_pred hhc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhh
Q 044195 330 TVN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLL 394 (1024)
Q Consensus 330 ~~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 394 (1024)
... ......+.+++++.++..+++...+..... .. ..+..+.|++.++|+|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AH---EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CB---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111 123457899999999999999877543221 11 23567789999999999888776543
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.19 E-value=2.1e-11 Score=118.85 Aligned_cols=125 Identities=22% Similarity=0.241 Sum_probs=74.2
Q ss_pred CCceEEecCCCCCCCCCchh-hhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccc-cCcccccCC
Q 044195 563 QQLRTFLPMKLSDYGGDYLA-WSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQI-LPQSINSLY 640 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~i~~L~ 640 (1024)
++|+.|.+.++. +. ...+..+..+++|++|+|++| .+..+ ..++.+++|++|++++|.++. +|..+.+++
T Consensus 24 ~~L~~L~l~~n~------l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELVLDNCK------SNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TSCSEEECCSCB------CBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred ccCCEEECCCCC------CChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 455555555543 22 122223355666667777666 46555 556666667777777766665 555555566
Q ss_pred CCcEEecCCCccccccc--cccCCCCcccEEeccCCccccccCc----cCCCCCCCCccCcee
Q 044195 641 NLHTVLLEDCRRLKKLC--KDMGNLTKLHHLRNSNVHSLEEMPK----GFGKLTCLTTLCRFV 697 (1024)
Q Consensus 641 ~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~l~~L~~L~~~~ 697 (1024)
+|++|++++| .+..+| ..+..+++|++|++++|. +..+|. .+..+++|+.|+...
T Consensus 96 ~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 96 NLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp TCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred CCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCC
Confidence 7777777666 555554 456666677777776666 555554 456666666664433
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.19 E-value=1.3e-11 Score=117.55 Aligned_cols=122 Identities=19% Similarity=0.206 Sum_probs=90.5
Q ss_pred CCceEEecCCCCCCCCCchh-hhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccc-cCcccccCC
Q 044195 563 QQLRTFLPMKLSDYGGDYLA-WSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQI-LPQSINSLY 640 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~i~~L~ 640 (1024)
++++.|.+.++. +. ...+..+..+++|++|++++| .+..+ ..++++++|++|++++|.++. +|..+..++
T Consensus 17 ~~l~~L~l~~n~------l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 17 SDVKELVLDNSR------SNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGCSEEECTTCB------CBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred ccCeEEEccCCc------CChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 567777776654 32 233444577888888888888 67777 667888888888888888886 777777788
Q ss_pred CCcEEecCCCccccccc--cccCCCCcccEEeccCCccccccCc----cCCCCCCCCccC
Q 044195 641 NLHTVLLEDCRRLKKLC--KDMGNLTKLHHLRNSNVHSLEEMPK----GFGKLTCLTTLC 694 (1024)
Q Consensus 641 ~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~l~~L~~L~ 694 (1024)
+|++|++++| .+..+| ..++.+++|++|++++|. +..+|. .++.+++|+.|+
T Consensus 89 ~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 89 NLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp TCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEET
T ss_pred CCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCccccc
Confidence 8888888888 566654 678888888888888887 777665 467777777764
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.19 E-value=3.5e-11 Score=120.70 Aligned_cols=123 Identities=11% Similarity=0.158 Sum_probs=77.6
Q ss_pred cCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccc-cCccccc
Q 044195 560 RGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQI-LPQSINS 638 (1024)
Q Consensus 560 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~i~~ 638 (1024)
..+++|+.|.+.++. +. .++.+..+++|++|++++| .+..++ .+..+++|++|++++|.++. .|..+..
T Consensus 41 ~~l~~L~~L~l~~n~------i~--~l~~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANIN------VT--DLTGIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHHHTCCEEEEESSC------CS--CCTTGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred hhcCCccEEeccCCC------cc--ChHHHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcC
Confidence 355667777766553 22 1224566677777777777 555554 56677777777777777764 5666777
Q ss_pred CCCCcEEecCCCccccccccccCCCCcccEEeccCCccccccCccCCCCCCCCcc
Q 044195 639 LYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKGFGKLTCLTTL 693 (1024)
Q Consensus 639 L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~l~~L~~L 693 (1024)
+++|++|++++|......|..++.+++|++|++++|..+..+| .++.+++|+.|
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L 164 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSL 164 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEE
Confidence 7777777777773333455667777777777777775455554 45555555555
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.18 E-value=4.1e-11 Score=123.24 Aligned_cols=124 Identities=22% Similarity=0.341 Sum_probs=100.6
Q ss_pred CCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCc-cccCCCCCcEeeccCCCccccCcc-cccCC
Q 044195 563 QQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPN-EIGNLKHLRFLNLSRTNIQILPQS-INSLY 640 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~~~i~~lp~~-i~~L~ 640 (1024)
++|+.|.+.++. +....+..|..+++|++|+|++| .+..+|. .+..+++|++|+|++|.++.+|.. +..++
T Consensus 40 ~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 112 (229)
T 3e6j_A 40 TNAQILYLHDNQ------ITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV 112 (229)
T ss_dssp TTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCEEEcCCCc------cCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcch
Confidence 778888888775 44444556788899999999999 6888874 468899999999999999988765 57899
Q ss_pred CCcEEecCCCccccccccccCCCCcccEEeccCCccccccCcc-CCCCCCCCccCc
Q 044195 641 NLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKG-FGKLTCLTTLCR 695 (1024)
Q Consensus 641 ~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~ 695 (1024)
+|++|++++| .+..+|..+..+++|++|++++|. +..+|.. +..+++|+.|..
T Consensus 113 ~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 113 HLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp TCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred hhCeEeccCC-cccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEe
Confidence 9999999998 777899889999999999999987 7777754 667777777643
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=3.7e-11 Score=117.05 Aligned_cols=137 Identities=20% Similarity=0.253 Sum_probs=112.2
Q ss_pred cccceeEEEEEccCCCCCcccccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCccc-CCcccc
Q 044195 536 FSQSLRHFSYIRGECDGGTRFDFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIID-LPNEIG 614 (1024)
Q Consensus 536 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~-lp~~l~ 614 (1024)
.+..++++.+..+..........+..+++|+.|.+.++. +... ..+..+++|++|+|++| .+.. +|..+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~------l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 92 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG------LISV--SNLPKLPKLKKLELSEN-RIFGGLDMLAE 92 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC------CCCC--SSCCCCSSCCEEEEESC-CCCSCCCHHHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC------CCCh--hhhccCCCCCEEECcCC-cCchHHHHHHh
Confidence 457788888887754312223345788999999998875 2222 66789999999999999 6776 787778
Q ss_pred CCCCCcEeeccCCCccccC--cccccCCCCcEEecCCCcccccccc----ccCCCCcccEEeccCCccccccCcc
Q 044195 615 NLKHLRFLNLSRTNIQILP--QSINSLYNLHTVLLEDCRRLKKLCK----DMGNLTKLHHLRNSNVHSLEEMPKG 683 (1024)
Q Consensus 615 ~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~----~i~~L~~L~~L~l~~~~~l~~~p~~ 683 (1024)
++++|++|++++|.++.+| ..+..+++|++|++++| .+..+|. .+..+++|++|++++|. +..+|.+
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 8999999999999999887 78999999999999999 7777776 78999999999999998 7777754
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.16 E-value=7.7e-11 Score=120.29 Aligned_cols=83 Identities=17% Similarity=0.380 Sum_probs=63.6
Q ss_pred EEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCc-ccccCCCCcEEecCCCcccccc-ccccCCCCcccEEeccC
Q 044195 596 RVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQ-SINSLYNLHTVLLEDCRRLKKL-CKDMGNLTKLHHLRNSN 673 (1024)
Q Consensus 596 ~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~ 673 (1024)
+.++++++ .+..+|..+. .+|++|++++|.++.+|. .+..+++|++|++++| .+..+ |..+.++++|++|++++
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCC
Confidence 46777777 6888887664 688888888888887765 6788888888888888 45544 66788888888888888
Q ss_pred CccccccCcc
Q 044195 674 VHSLEEMPKG 683 (1024)
Q Consensus 674 ~~~l~~~p~~ 683 (1024)
|. +..+|..
T Consensus 90 N~-l~~l~~~ 98 (220)
T 2v9t_B 90 NK-ITELPKS 98 (220)
T ss_dssp SC-CCCCCTT
T ss_pred Cc-CCccCHh
Confidence 87 6666543
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.16 E-value=2.9e-11 Score=118.74 Aligned_cols=129 Identities=15% Similarity=0.115 Sum_probs=100.0
Q ss_pred cccCCCCceEEecCCCCCCCCCchhhhhhhhhCCC-CceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCccc
Q 044195 558 FIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDL-PRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSI 636 (1024)
Q Consensus 558 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i 636 (1024)
.+.++.+|+.|.+.++. +.. .+.+..+ ++|++|+|++| .+..+ ..++.+++|++|++++|.++.+|+.+
T Consensus 14 ~~~~~~~L~~L~l~~n~------l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYK------IPV--IENLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp EEECTTSCEEEECTTSC------CCS--CCCGGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred hcCCcCCceEEEeeCCC------Cch--hHHhhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 34567788888888764 221 2345444 48999999998 68777 57888999999999999999888665
Q ss_pred -ccCCCCcEEecCCCcccccccc--ccCCCCcccEEeccCCccccccCcc----CCCCCCCCccCceee
Q 044195 637 -NSLYNLHTVLLEDCRRLKKLCK--DMGNLTKLHHLRNSNVHSLEEMPKG----FGKLTCLTTLCRFVV 698 (1024)
Q Consensus 637 -~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~----i~~l~~L~~L~~~~~ 698 (1024)
..+++|++|++++| .+..+|. .+..+++|++|++++|. +..+|.. ++.+++|+.|+...+
T Consensus 84 ~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 84 DQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred hhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 88999999999998 6777876 78889999999999998 7777764 778888888855443
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.14 E-value=9.1e-11 Score=119.73 Aligned_cols=124 Identities=23% Similarity=0.346 Sum_probs=95.6
Q ss_pred CCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccC-CccccCCCCCcEeeccCCCccccCcc-cccCC
Q 044195 563 QQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDL-PNEIGNLKHLRFLNLSRTNIQILPQS-INSLY 640 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~~~i~~lp~~-i~~L~ 640 (1024)
++++.|.+.++. +.......|..+++|++|+|++| .+..+ |..+.++++|++|+|++|.++.+|.. +..++
T Consensus 32 ~~l~~L~l~~n~------i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQNT------IKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF 104 (220)
T ss_dssp TTCCEEECCSSC------CCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCEEECCCCc------CCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC
Confidence 578888887765 33333445678889999999988 57666 67888899999999999999888766 57889
Q ss_pred CCcEEecCCCcccccc-ccccCCCCcccEEeccCCccccccCcc-CCCCCCCCccCc
Q 044195 641 NLHTVLLEDCRRLKKL-CKDMGNLTKLHHLRNSNVHSLEEMPKG-FGKLTCLTTLCR 695 (1024)
Q Consensus 641 ~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~ 695 (1024)
+|++|++++| .+..+ |..+..+++|++|++++|. +..++.. +..+++|+.|..
T Consensus 105 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 105 SLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEe
Confidence 9999999988 55555 5568888999999999888 7777654 677777777643
No 126
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.13 E-value=5.6e-10 Score=114.68 Aligned_cols=184 Identities=13% Similarity=0.090 Sum_probs=114.4
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCC-ceEEEEecCCCCHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQ-IKAWTFVSEDFNVFRVTKSI 259 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 259 (1024)
..++|++..++.+.+++.... .+.+.|+|++|+|||++|+.+++... ...+. ..+.++.+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 358999999999999996542 23489999999999999999987321 11222 23344443333322221111
Q ss_pred HHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchh-hhc-cCCcc
Q 044195 260 LKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRV-TVN-MGADQ 337 (1024)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~-~~~-~~~~~ 337 (1024)
..+..... ...+++.+|||||++.-.....+.+...+.....+.++|+||+.... ... .....
T Consensus 90 -~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 -KEFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp -HHHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred -HHHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 11110000 01357889999999776655556555544444456788888876532 111 12234
Q ss_pred ceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044195 338 AYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTL 390 (1024)
Q Consensus 338 ~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 390 (1024)
.+.+.+++.++..+++...+..... . -..+..+.|++.++|.|..+..+
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGV-K---ITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTC-C---BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 7899999999999999876532111 1 11356778999999999865444
No 127
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.12 E-value=2.2e-10 Score=120.50 Aligned_cols=97 Identities=25% Similarity=0.248 Sum_probs=57.8
Q ss_pred hCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcccE
Q 044195 589 LLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHH 668 (1024)
Q Consensus 589 l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 668 (1024)
+..+++|++|++++| .+..+| .+..+++|++|+|++|.++.+|. +..+++|++|++++| .+..+|.. .. ++|++
T Consensus 37 ~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~-~~-~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGI-PS-ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTC-CC-SSCCE
T ss_pred hhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCcc-cc-CcccE
Confidence 345566666666666 566665 46666666666666666666655 666666666666666 55555442 22 66666
Q ss_pred EeccCCccccccCccCCCCCCCCcc
Q 044195 669 LRNSNVHSLEEMPKGFGKLTCLTTL 693 (1024)
Q Consensus 669 L~l~~~~~l~~~p~~i~~l~~L~~L 693 (1024)
|++++|. +..++ .++.+++|+.|
T Consensus 111 L~L~~N~-l~~~~-~l~~l~~L~~L 133 (263)
T 1xeu_A 111 LFLDNNE-LRDTD-SLIHLKNLEIL 133 (263)
T ss_dssp EECCSSC-CSBSG-GGTTCTTCCEE
T ss_pred EEccCCc-cCCCh-hhcCcccccEE
Confidence 6666665 55543 35555555554
No 128
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.11 E-value=1.8e-10 Score=117.59 Aligned_cols=125 Identities=17% Similarity=0.248 Sum_probs=93.2
Q ss_pred CCceEEecCCCCCCCCCchhhhhh-hhhCCCCceEEEEeCCCCCcccCCc-cccCCCCCcEeeccCCCccccCcc-cccC
Q 044195 563 QQLRTFLPMKLSDYGGDYLAWSVL-QLLLDLPRLRVFSLCGYCNIIDLPN-EIGNLKHLRFLNLSRTNIQILPQS-INSL 639 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~~~i~~lp~~-i~~L 639 (1024)
..++.|.+.++. +....+ ..|..+++|++|+|++| .+..++. .+.++++|++|+|++|.++.+|.. +..+
T Consensus 32 ~~~~~L~L~~N~------l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 104 (220)
T 2v70_A 32 QYTAELRLNNNE------FTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGL 104 (220)
T ss_dssp TTCSEEECCSSC------CCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTC
T ss_pred CCCCEEEcCCCc------CCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCC
Confidence 346777777664 322222 23578888999999888 6777764 688889999999999988877654 7888
Q ss_pred CCCcEEecCCCcccccc-ccccCCCCcccEEeccCCcccccc-CccCCCCCCCCccCce
Q 044195 640 YNLHTVLLEDCRRLKKL-CKDMGNLTKLHHLRNSNVHSLEEM-PKGFGKLTCLTTLCRF 696 (1024)
Q Consensus 640 ~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~-p~~i~~l~~L~~L~~~ 696 (1024)
++|++|++++| .+..+ |..+..+++|++|++++|. +..+ |..+..+++|+.|...
T Consensus 105 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 105 ESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp SSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECC
T ss_pred cCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEec
Confidence 99999999988 55555 5678888999999998888 6665 5667888888877443
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.10 E-value=7.4e-11 Score=130.77 Aligned_cols=93 Identities=25% Similarity=0.360 Sum_probs=67.8
Q ss_pred EEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcc-cc-cCCCCcEEecCCCccccccc-cccCCCCcccEEecc
Q 044195 596 RVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQS-IN-SLYNLHTVLLEDCRRLKKLC-KDMGNLTKLHHLRNS 672 (1024)
Q Consensus 596 ~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~-~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~ 672 (1024)
++++++++ .+..+|..+. .+|++|+|++|.++.+|.. +. ++++|++|++++| .+..+| ..+.++++|++|+++
T Consensus 21 ~~l~c~~~-~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSS-CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCC-CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECC
Confidence 46788877 6888887664 4688888888888887655 44 7888888888888 666665 458888888888888
Q ss_pred CCccccccCcc-CCCCCCCCcc
Q 044195 673 NVHSLEEMPKG-FGKLTCLTTL 693 (1024)
Q Consensus 673 ~~~~l~~~p~~-i~~l~~L~~L 693 (1024)
+|. +..+|.. +..+++|+.|
T Consensus 97 ~N~-l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 97 SNH-LHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp SSC-CCEECTTTTTTCTTCCEE
T ss_pred CCc-CCcCCHHHhCCCcCCCEE
Confidence 887 6666543 4455555544
No 130
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.10 E-value=2.4e-10 Score=115.72 Aligned_cols=124 Identities=29% Similarity=0.392 Sum_probs=78.5
Q ss_pred CCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCcc-ccCCCCCcEeeccCCCccccCcc-cccCC
Q 044195 563 QQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNE-IGNLKHLRFLNLSRTNIQILPQS-INSLY 640 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~L~~~~i~~lp~~-i~~L~ 640 (1024)
++|+.|.+.++. +.......+..+++|++|+|++| .+..+|.. +..+++|++|+|++|.++.+|.. +.+++
T Consensus 28 ~~l~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 100 (208)
T 2o6s_A 28 AQTTYLDLETNS------LKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT 100 (208)
T ss_dssp TTCSEEECCSSC------CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEEcCCCc------cCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc
Confidence 456667666654 22222233466777777777777 56666543 46677777777777777766554 46777
Q ss_pred CCcEEecCCCccccccccc-cCCCCcccEEeccCCccccccCcc-CCCCCCCCccCc
Q 044195 641 NLHTVLLEDCRRLKKLCKD-MGNLTKLHHLRNSNVHSLEEMPKG-FGKLTCLTTLCR 695 (1024)
Q Consensus 641 ~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~L~~ 695 (1024)
+|++|++++| .+..+|.. +.++++|++|++++|. +..+|.. +..+++|+.|..
T Consensus 101 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 101 QLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEe
Confidence 7777777776 55555543 5677777777777776 5555554 566666666643
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.07 E-value=1.4e-10 Score=140.31 Aligned_cols=108 Identities=23% Similarity=0.267 Sum_probs=88.4
Q ss_pred hhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCc
Q 044195 586 LQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTK 665 (1024)
Q Consensus 586 ~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~ 665 (1024)
...+..+++|++|+|++| .+..+|..+.++++|++|+|++|.++.+|..|++|++|++|+|++| .+..+|..+++|++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCC
Confidence 445678888999999888 6888888888888999999999988888888888999999999988 66788888888999
Q ss_pred ccEEeccCCccccccCccCCCCCCCCccCce
Q 044195 666 LHHLRNSNVHSLEEMPKGFGKLTCLTTLCRF 696 (1024)
Q Consensus 666 L~~L~l~~~~~l~~~p~~i~~l~~L~~L~~~ 696 (1024)
|++|++++|. +..+|..|+++++|+.|...
T Consensus 295 L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 295 LKYFYFFDNM-VTTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp CSEEECCSSC-CCCCCSSTTSCTTCCCEECT
T ss_pred CCEEECCCCC-CCccChhhhcCCCccEEeCC
Confidence 9999998887 78888888888888888543
No 132
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.06 E-value=5e-10 Score=115.08 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=109.2
Q ss_pred cccceeEEEEEccCCCCCcccccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCcc-cc
Q 044195 536 FSQSLRHFSYIRGECDGGTRFDFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNE-IG 614 (1024)
Q Consensus 536 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~-l~ 614 (1024)
++..++.+.+..+..... ....+.++++|+.|.+.++. +.......|..+++|++|+|++| .+..+|.. +.
T Consensus 38 ~~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~------l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~ 109 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQ------LGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFD 109 (229)
T ss_dssp CCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC------CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CCCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCC------CCCcChhhcccCCCcCEEECCCC-cCCccChhHhC
Confidence 567888999888755432 23557789999999999876 33322344689999999999999 78888754 68
Q ss_pred CCCCCcEeeccCCCccccCcccccCCCCcEEecCCCcccccccc-ccCCCCcccEEeccCCc
Q 044195 615 NLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCK-DMGNLTKLHHLRNSNVH 675 (1024)
Q Consensus 615 ~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 675 (1024)
.+++|++|+|++|.++.+|..+..+++|++|++++| .+..+|. .+..+++|+.|++++|.
T Consensus 110 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 999999999999999999999999999999999998 7777774 58899999999999998
No 133
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.06 E-value=3.8e-10 Score=114.25 Aligned_cols=84 Identities=25% Similarity=0.354 Sum_probs=39.3
Q ss_pred CCCCceEEEEeCCCCCcccCCcc-ccCCCCCcEeeccCCCccccCcc-cccCCCCcEEecCCCccccccccc-cCCCCcc
Q 044195 590 LDLPRLRVFSLCGYCNIIDLPNE-IGNLKHLRFLNLSRTNIQILPQS-INSLYNLHTVLLEDCRRLKKLCKD-MGNLTKL 666 (1024)
Q Consensus 590 ~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L 666 (1024)
..+++|++|+|++| .+..+|.. +.++++|++|++++|.++.+|.. +..+++|++|++++| .+..+|.. +..+++|
T Consensus 73 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 73 NKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSL 150 (208)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred CCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCc
Confidence 44455555555555 34444322 34455555555555555444433 344555555555554 33333332 3445555
Q ss_pred cEEeccCCc
Q 044195 667 HHLRNSNVH 675 (1024)
Q Consensus 667 ~~L~l~~~~ 675 (1024)
++|++++|.
T Consensus 151 ~~L~l~~N~ 159 (208)
T 2o6s_A 151 QYIWLHDNP 159 (208)
T ss_dssp CEEECCSCC
T ss_pred cEEEecCCC
Confidence 555555543
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.06 E-value=1.5e-10 Score=110.20 Aligned_cols=128 Identities=19% Similarity=0.244 Sum_probs=103.8
Q ss_pred cccceeEEEEEccCCCCCcccccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCccc-CCcccc
Q 044195 536 FSQSLRHFSYIRGECDGGTRFDFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIID-LPNEIG 614 (1024)
Q Consensus 536 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~-lp~~l~ 614 (1024)
.+..++++.+..+..........+..+++|+.|.+.++. +... ..+..+++|++|+|++| .+.. +|..++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~------l~~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~ 85 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG------LTSI--ANLPKLNKLKKLELSDN-RVSGGLEVLAE 85 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC------CCCC--TTCCCCTTCCEEECCSS-CCCSCTHHHHH
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC------CCCc--hhhhcCCCCCEEECCCC-cccchHHHHhh
Confidence 456788888877754312233456788999999998875 2222 66789999999999999 6777 888788
Q ss_pred CCCCCcEeeccCCCccccC--cccccCCCCcEEecCCCcccccccc----ccCCCCcccEEeccC
Q 044195 615 NLKHLRFLNLSRTNIQILP--QSINSLYNLHTVLLEDCRRLKKLCK----DMGNLTKLHHLRNSN 673 (1024)
Q Consensus 615 ~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~----~i~~L~~L~~L~l~~ 673 (1024)
++++|++|++++|.++.+| ..+..+++|++|++++| .+..+|. .+..+++|++|++++
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 8999999999999999875 88999999999999999 7777765 688999999999863
No 135
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.04 E-value=3.4e-10 Score=115.44 Aligned_cols=109 Identities=15% Similarity=0.107 Sum_probs=50.4
Q ss_pred ccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCcccc-Cccc
Q 044195 559 IRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQIL-PQSI 636 (1024)
Q Consensus 559 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~l-p~~i 636 (1024)
+..+++|+.|.+.++. +.......|..+++|++|+|++| .+..+| ..+.++++|++|+|++|.++.+ |..+
T Consensus 53 ~~~l~~L~~L~L~~N~------i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 125 (220)
T 2v70_A 53 FKKLPQLRKINFSNNK------ITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSF 125 (220)
T ss_dssp GGGCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSS
T ss_pred hccCCCCCEEECCCCc------CCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHc
Confidence 3444555555554443 22222223444555555555555 344443 2244555555555555555443 3344
Q ss_pred ccCCCCcEEecCCCcccccc-ccccCCCCcccEEeccCCc
Q 044195 637 NSLYNLHTVLLEDCRRLKKL-CKDMGNLTKLHHLRNSNVH 675 (1024)
Q Consensus 637 ~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~ 675 (1024)
..+++|++|++++| .+..+ |..+..+++|++|++++|.
T Consensus 126 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 126 IGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 45555555555554 33333 3444555555555555544
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.01 E-value=3.5e-10 Score=132.19 Aligned_cols=117 Identities=19% Similarity=0.217 Sum_probs=82.5
Q ss_pred ceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcE
Q 044195 565 LRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHT 644 (1024)
Q Consensus 565 Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 644 (1024)
|+.|.+.++. ++. ++.+..+++|++|+|++| .+..+|..++++++|++|+|++|.++.+| .++.|++|++
T Consensus 443 L~~L~Ls~n~------l~~--lp~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~ 512 (567)
T 1dce_A 443 VRVLHLAHKD------LTV--LCHLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQE 512 (567)
T ss_dssp CSEEECTTSC------CSS--CCCGGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCE
T ss_pred ceEEEecCCC------CCC--CcCccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcE
Confidence 5666666553 221 223667778888888888 67788888888888888888888888777 6788888888
Q ss_pred EecCCCcccccc--ccccCCCCcccEEeccCCccccccCccCCC----CCCCCcc
Q 044195 645 VLLEDCRRLKKL--CKDMGNLTKLHHLRNSNVHSLEEMPKGFGK----LTCLTTL 693 (1024)
Q Consensus 645 L~l~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~----l~~L~~L 693 (1024)
|++++| .+..+ |..++.+++|+.|++++|. +..+|+.+.. +++|+.|
T Consensus 513 L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 513 LLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp EECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred EECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCcc
Confidence 888887 56665 7778888888888888887 6666654332 4455444
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.01 E-value=4e-11 Score=144.95 Aligned_cols=119 Identities=24% Similarity=0.296 Sum_probs=98.9
Q ss_pred ccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCccc
Q 044195 557 DFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSI 636 (1024)
Q Consensus 557 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i 636 (1024)
..+..+++|+.|.+.++. +. ..+..+..+++|++|+|++| .+..+|..|++|++|++|+|++|.|+.+|..+
T Consensus 218 ~~~~~l~~L~~L~Ls~n~------l~-~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~ 289 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQ------IF-NISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL 289 (727)
T ss_dssp ----CCCCCCEEECTTSC------CS-CCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG
T ss_pred hhhccCCCCcEEECCCCC------CC-CCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhh
Confidence 346678889999998875 22 34455678999999999999 78899999999999999999999999999999
Q ss_pred ccCCCCcEEecCCCccccccccccCCCCcccEEeccCCccccccCccC
Q 044195 637 NSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVHSLEEMPKGF 684 (1024)
Q Consensus 637 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i 684 (1024)
++|++|++|+|++| .+..+|..|++|++|++|++++|...+.+|..+
T Consensus 290 ~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 290 GSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp GGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred cCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 99999999999998 788999999999999999999998333444443
No 138
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.00 E-value=1.8e-09 Score=117.92 Aligned_cols=268 Identities=15% Similarity=0.075 Sum_probs=145.6
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (1024)
..++|++..++.+..++..... .+...+.|.|+|++|+|||++|+++++ .... ..++++++......++.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~--~~~~---~~~~~~~~~~~~~~~l~---- 81 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAH--ELGV---NLRVTSGPAIEKPGDLA---- 81 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHH--HHTC---CEEEECTTTCCSHHHHH----
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHH--HhCC---CEEEEeccccCChHHHH----
Confidence 4599999999998888764210 012335789999999999999999987 3222 23344433322221111
Q ss_pred HhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCC------------------CCCcEEEE
Q 044195 261 KSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAG------------------APGSKIVV 322 (1024)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~------------------~~gs~ilv 322 (1024)
..+... ..++.+|+||++..-.....+.+...+... .++..+|.
T Consensus 82 -----------------~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 82 -----------------AILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp -----------------HHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred -----------------HHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 111110 135679999999765544444333222111 02356666
Q ss_pred EcCCch-hhhcc-CC-ccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhhcCC--
Q 044195 323 TTRNLR-VTVNM-GA-DQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLLRGK-- 397 (1024)
Q Consensus 323 TtR~~~-~~~~~-~~-~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~-- 397 (1024)
||.... +...+ .. ...+.+.+++.++..+++...+..... .. ..+....|++.++|.|-.+..+...+...
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RI---TEEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CC---CHHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 666432 21111 12 247899999999999999887543221 12 23667889999999998877665443221
Q ss_pred ------CChhHHHHHHhccccCCCCCCCChhhHHHhhhcCCChhHHHHHhhhccCCCCc-----------eeCHHHHHH-
Q 044195 398 ------HDPRDWEFVLNNDICNLPEENCNIIPALGVSCHFLPPQLKQCFAYCSLFPKGY-----------EFQEEEIIS- 459 (1024)
Q Consensus 398 ------~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~~~fp~~~-----------~i~~~~li~- 459 (1024)
-+.+....++.. +...+..++...+..+..+.-...+- .+++..+.+
T Consensus 220 ~~~~~~i~~~~~~~~~~~---------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~ 284 (324)
T 1hqc_A 220 VAGEEVITRERALEALAA---------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEV 284 (324)
T ss_dssp TTSCSCCCHHHHHHHHHH---------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHH---------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHH
Confidence 122333333322 12223445555555554433221221 133333222
Q ss_pred ---HHHhcCCcccCCCCccHHHHHHHHHH-HHHhcCCccc
Q 044195 460 ---LWAAEGFLHQENSGRKMEDLGREFVQ-ELLSRSFFQR 495 (1024)
Q Consensus 460 ---~w~~~gli~~~~~~~~~~~~~~~~~~-~Lv~~~l~~~ 495 (1024)
+-+..|++.....+....+.+.++++ ++.+|+++|+
T Consensus 285 l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 285 HEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp THHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 34567777655556666777777776 7777777764
No 139
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=2.4e-09 Score=116.84 Aligned_cols=186 Identities=17% Similarity=0.187 Sum_probs=114.8
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccC-CceEEEEecCCCCHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF-QIKAWTFVSEDFNVFRVTKSI 259 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 259 (1024)
..++|++..++.+.+++... ..+.+.|+|++|+|||++|+.+++... ...+ ...++++.+...... .++++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGID-VVRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHH-HHHTH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChH-HHHHH
Confidence 35999999999999998653 223389999999999999999997321 1112 123444433322221 11222
Q ss_pred HHhccCCCCCCCcHHHHHHHHHHHh-CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchh-hhc-cCCc
Q 044195 260 LKSITNDQSKDDDLNWVQEKLKKQL-SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRV-TVN-MGAD 336 (1024)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~-~~~-~~~~ 336 (1024)
+..+.... ..+ .+++.++||||++.-....++.+...+.....++++|+||+.... ... ....
T Consensus 93 ~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 93 IKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 22211000 001 346889999999776655666665555444456788888876432 111 1233
Q ss_pred cceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChH-HHHHHHh
Q 044195 337 QAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPL-AAKTLGG 392 (1024)
Q Consensus 337 ~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 392 (1024)
..+.+.+++.++..+++...+...+- . -..+.+..|++.++|.|. |+..+..
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDV-K---YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTC-C---BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 57999999999999999876532111 1 113567789999999995 4555443
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.95 E-value=6.4e-10 Score=109.07 Aligned_cols=126 Identities=13% Similarity=0.073 Sum_probs=104.5
Q ss_pred ccceeEEEEEccCCCCCcccccccCCC-CceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCccc-c
Q 044195 537 SQSLRHFSYIRGECDGGTRFDFIRGVQ-QLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNEI-G 614 (1024)
Q Consensus 537 ~~~~r~ls~~~~~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~l-~ 614 (1024)
+..++.+.+.++.... ++.+..+. +|+.|.+.++. +.. +..+..+++|++|+|++| .+..+|..+ .
T Consensus 18 ~~~L~~L~l~~n~l~~---i~~~~~~~~~L~~L~Ls~N~------l~~--~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~ 85 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV---IENLGATLDQFDAIDFSDNE------IRK--LDGFPLLRRLKTLLVNNN-RICRIGEGLDQ 85 (176)
T ss_dssp TTSCEEEECTTSCCCS---CCCGGGGTTCCSEEECCSSC------CCE--ECCCCCCSSCCEEECCSS-CCCEECSCHHH
T ss_pred cCCceEEEeeCCCCch---hHHhhhcCCCCCEEECCCCC------CCc--ccccccCCCCCEEECCCC-cccccCcchhh
Confidence 4567888887765432 34455555 99999999875 332 267789999999999999 788888665 8
Q ss_pred CCCCCcEeeccCCCccccCc--ccccCCCCcEEecCCCccccccccc----cCCCCcccEEeccCCc
Q 044195 615 NLKHLRFLNLSRTNIQILPQ--SINSLYNLHTVLLEDCRRLKKLCKD----MGNLTKLHHLRNSNVH 675 (1024)
Q Consensus 615 ~l~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~----i~~L~~L~~L~l~~~~ 675 (1024)
.+++|++|++++|.++.+|. .+..+++|++|++++| .+..+|.. +..+++|+.|++++|.
T Consensus 86 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999999999999999987 8999999999999999 67788875 8999999999999887
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=1.9e-09 Score=117.78 Aligned_cols=117 Identities=13% Similarity=0.177 Sum_probs=69.8
Q ss_pred CCCceEEecCCCCCCCCCchhhhhhhhhCC-CCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccC-ccccc-
Q 044195 562 VQQLRTFLPMKLSDYGGDYLAWSVLQLLLD-LPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILP-QSINS- 638 (1024)
Q Consensus 562 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp-~~i~~- 638 (1024)
+.++..|.+.+. +....+..+.. +++|++|||++| .+......-+.++.++++.+..+. +| ..|..
T Consensus 24 ~~~l~~L~l~g~-------i~~~~~~~l~~~l~~L~~LdLs~n-~i~~~~~~~~~~~~~~~~~~~~~~---I~~~aF~~~ 92 (329)
T 3sb4_A 24 ANSITHLTLTGK-------LNAEDFRHLRDEFPSLKVLDISNA-EIKMYSGKAGTYPNGKFYIYMANF---VPAYAFSNV 92 (329)
T ss_dssp HHHCSEEEEEEE-------ECHHHHHHHHHSCTTCCEEEEEEE-EECCEEESSSSSGGGCCEEECTTE---ECTTTTEEE
T ss_pred hCceeEEEEecc-------ccHHHHHHHHHhhccCeEEecCcc-eeEEecCccccccccccccccccc---cCHHHhccc
Confidence 445666666543 22344455533 889999999998 566221111223334555555553 33 23555
Q ss_pred -------CCCCcEEecCCCcccccccc-ccCCCCcccEEeccCCccccccCcc-CCCCCCCCc
Q 044195 639 -------LYNLHTVLLEDCRRLKKLCK-DMGNLTKLHHLRNSNVHSLEEMPKG-FGKLTCLTT 692 (1024)
Q Consensus 639 -------L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~-i~~l~~L~~ 692 (1024)
+.+|+.|++.+ .+..++. .+.++++|+.|++.+|. +..++.. +..+.++..
T Consensus 93 ~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~ 152 (329)
T 3sb4_A 93 VNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIF 152 (329)
T ss_dssp ETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEE
T ss_pred ccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEE
Confidence 88899999887 5666654 47888999999998887 5555543 444443333
No 142
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.93 E-value=1.8e-09 Score=119.64 Aligned_cols=124 Identities=18% Similarity=0.205 Sum_probs=94.8
Q ss_pred CCceEEecCCCCCCCCCchhhhhhhhhC-CCCceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCccccCc-ccccC
Q 044195 563 QQLRTFLPMKLSDYGGDYLAWSVLQLLL-DLPRLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQILPQ-SINSL 639 (1024)
Q Consensus 563 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~-~i~~L 639 (1024)
..++.|.+.++. +.......+. .+++|++|+|++| .+..+| ..+.++++|++|+|++|.++.+|. .+..+
T Consensus 39 ~~l~~L~Ls~N~------l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 111 (361)
T 2xot_A 39 SYTALLDLSHNN------LSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL 111 (361)
T ss_dssp TTCSEEECCSSC------CCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCCCEEECCCCC------CCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCC
Confidence 457788887765 3333334455 8899999999998 687776 568889999999999999988765 47889
Q ss_pred CCCcEEecCCCcccccc-ccccCCCCcccEEeccCCccccccCccC----CCCCCCCccCc
Q 044195 640 YNLHTVLLEDCRRLKKL-CKDMGNLTKLHHLRNSNVHSLEEMPKGF----GKLTCLTTLCR 695 (1024)
Q Consensus 640 ~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~i----~~l~~L~~L~~ 695 (1024)
++|++|++++| .+..+ |..+..+++|++|++++|. +..+|..+ ..+++|+.|+.
T Consensus 112 ~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 112 QALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEEC
T ss_pred cCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEEC
Confidence 99999999998 55555 5678899999999999988 88888764 56777777744
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.91 E-value=2.6e-09 Score=106.24 Aligned_cols=99 Identities=27% Similarity=0.444 Sum_probs=70.9
Q ss_pred CceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCc-ccccCCCCcEEecCCCcccccccc-ccCCCCcccEEe
Q 044195 593 PRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQ-SINSLYNLHTVLLEDCRRLKKLCK-DMGNLTKLHHLR 670 (1024)
Q Consensus 593 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~ 670 (1024)
++|++|+|++| .+..+|..+.++++|++|+|++|.++.++. .+..+++|++|++++| .+..+|. .+..+++|++|+
T Consensus 31 ~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEE
Confidence 46777778777 677777777777888888888887776653 4777788888888777 5555543 577778888888
Q ss_pred ccCCccccccCcc-CCCCCCCCccC
Q 044195 671 NSNVHSLEEMPKG-FGKLTCLTTLC 694 (1024)
Q Consensus 671 l~~~~~l~~~p~~-i~~l~~L~~L~ 694 (1024)
+++|. +..+|.. +..+++|+.|.
T Consensus 109 L~~N~-l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 109 LHGND-ISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CCSSC-CCBCCTTTTTTCTTCCEEE
T ss_pred CCCCC-CCeeChhhhhcCccccEEE
Confidence 87777 6666654 56666666663
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.91 E-value=1.1e-09 Score=128.02 Aligned_cols=97 Identities=23% Similarity=0.294 Sum_probs=89.7
Q ss_pred ceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcccEEeccC
Q 044195 594 RLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSN 673 (1024)
Q Consensus 594 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~ 673 (1024)
.|++|+|++| .+..+|. ++++++|++|+|++|.++.+|..++.|++|++|++++| .+..+| .++++++|++|++++
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCC
Confidence 5899999999 7999997 99999999999999999999999999999999999999 777888 899999999999999
Q ss_pred Ccccccc--CccCCCCCCCCccCc
Q 044195 674 VHSLEEM--PKGFGKLTCLTTLCR 695 (1024)
Q Consensus 674 ~~~l~~~--p~~i~~l~~L~~L~~ 695 (1024)
|. +..+ |..++.+++|+.|..
T Consensus 518 N~-l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 518 NR-LQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp SC-CCSSSTTGGGGGCTTCCEEEC
T ss_pred CC-CCCCCCcHHHhcCCCCCEEEe
Confidence 98 7777 888999999998844
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.87 E-value=6.3e-09 Score=103.49 Aligned_cols=97 Identities=21% Similarity=0.358 Sum_probs=53.2
Q ss_pred ceEEEEeCCCCCcccCCcc--ccCCCCCcEeeccCCCcccc-CcccccCCCCcEEecCCCcccccccc-ccCCCCcccEE
Q 044195 594 RLRVFSLCGYCNIIDLPNE--IGNLKHLRFLNLSRTNIQIL-PQSINSLYNLHTVLLEDCRRLKKLCK-DMGNLTKLHHL 669 (1024)
Q Consensus 594 ~L~~L~L~~~~~l~~lp~~--l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L 669 (1024)
+|++|+|++| .+..+|.. ++++++|++|+|++|.++.+ |..+..+++|++|++++| .+..+|. .+.++++|++|
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEE
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEE
Confidence 5566666666 45555432 55666666666666666544 445566666666666665 3444333 35556666666
Q ss_pred eccCCcccccc-CccCCCCCCCCcc
Q 044195 670 RNSNVHSLEEM-PKGFGKLTCLTTL 693 (1024)
Q Consensus 670 ~l~~~~~l~~~-p~~i~~l~~L~~L 693 (1024)
++++|. +..+ |..++.+++|+.|
T Consensus 108 ~L~~N~-l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 108 NLYDNQ-ISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp ECCSSC-CCEECTTSSTTCTTCCEE
T ss_pred ECCCCc-CCeeCHHHhhcCCCCCEE
Confidence 666665 3332 4445555555544
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=9.7e-09 Score=112.10 Aligned_cols=97 Identities=12% Similarity=-0.014 Sum_probs=69.7
Q ss_pred CCCccEEEEeccc--Ccc-ccCCCCCCcCEEEEccCCCccccCCC---CCCCcc-EEEEcCCCCcccchhhhcCCCCCCC
Q 044195 911 LLLLEKLVIQSCK--QLL-VTIQCLPALSELQIRGCRRVVFSSPI---DFSSLK-SVFLGDIANQVVLAALFEQGLPQLE 983 (1024)
Q Consensus 911 l~~L~~L~l~~c~--~l~-~~l~~l~~L~~L~l~~~~~l~~~~~~---~l~~L~-~L~l~~c~~l~~l~~~~l~~l~~L~ 983 (1024)
+++|+.|++.+|. .++ ..+..|++|+++++.++ +..++.. .+++|+ .|.+.+ .++.++...|.+|++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 6778888887753 333 45777888888888776 5555554 455777 888875 67778877888888888
Q ss_pred EEeeecCCCCCcccccccccccCCCCCCEEee
Q 044195 984 SLKIDSVRAPTYLWQSETRLLQDIRSLNRLHI 1015 (1024)
Q Consensus 984 ~L~l~~c~~l~~l~~~~p~~l~~l~~L~~L~l 1015 (1024)
.|++.++ +++.++ +..|.++++|+.|+.
T Consensus 301 ~l~l~~n-~i~~I~---~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 301 YVLATGD-KITTLG---DELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEECSS-CCCEEC---TTTTCTTCCCCEEEC
T ss_pred EEEeCCC-ccCccc---hhhhcCCcchhhhcc
Confidence 8888766 667763 347788888888763
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.84 E-value=1.2e-08 Score=101.32 Aligned_cols=94 Identities=23% Similarity=0.347 Sum_probs=81.3
Q ss_pred EEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccc-cccCCCCcccEEeccCC
Q 044195 596 RVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLC-KDMGNLTKLHHLRNSNV 674 (1024)
Q Consensus 596 ~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~ 674 (1024)
++++++++ .+..+|..+. .+|++|+|++|.++.+|..+..+++|++|++++| .+..++ ..+.++++|++|++++|
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC
Confidence 57899988 7999997764 6999999999999999999999999999999999 666665 45899999999999999
Q ss_pred ccccccCc-cCCCCCCCCccC
Q 044195 675 HSLEEMPK-GFGKLTCLTTLC 694 (1024)
Q Consensus 675 ~~l~~~p~-~i~~l~~L~~L~ 694 (1024)
. +..++. .++.+++|+.|.
T Consensus 89 ~-l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 89 R-LRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp C-CCBCCTTTTTTCTTCCEEE
T ss_pred c-cCEeCHHHhCCCCCCCEEE
Confidence 8 777765 477888888774
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.82 E-value=6.9e-09 Score=101.11 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=41.3
Q ss_pred CceEEEEeCCCCCcccC-CccccCCCCCcEeeccCCCccccCcc-cccCCCCcEEecCCCccccccccc-cCCCCcccEE
Q 044195 593 PRLRVFSLCGYCNIIDL-PNEIGNLKHLRFLNLSRTNIQILPQS-INSLYNLHTVLLEDCRRLKKLCKD-MGNLTKLHHL 669 (1024)
Q Consensus 593 ~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L 669 (1024)
++|++|+|++| .+..+ |..+.++++|++|+|++|.++.+|.. +.++++|++|++++| .+..+|.. +..+++|++|
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEE
Confidence 44555555555 34444 34445555555555555555555443 245555555555554 44444443 4555555555
Q ss_pred eccCCc
Q 044195 670 RNSNVH 675 (1024)
Q Consensus 670 ~l~~~~ 675 (1024)
++++|.
T Consensus 111 ~L~~N~ 116 (174)
T 2r9u_A 111 YLYNNP 116 (174)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 555554
No 149
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.81 E-value=6.8e-09 Score=103.23 Aligned_cols=105 Identities=20% Similarity=0.211 Sum_probs=80.2
Q ss_pred CceEEecCCCCCCCCCchhhhhhh-hhCCCCceEEEEeCCCCCcccC-CccccCCCCCcEeeccCCCccccCcc-cccCC
Q 044195 564 QLRTFLPMKLSDYGGDYLAWSVLQ-LLLDLPRLRVFSLCGYCNIIDL-PNEIGNLKHLRFLNLSRTNIQILPQS-INSLY 640 (1024)
Q Consensus 564 ~Lr~L~l~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~~~i~~lp~~-i~~L~ 640 (1024)
+++.|.+.++. +...... .+..+++|++|+|++| .+..+ |..+.++++|++|+|++|.++.+|.. +..++
T Consensus 30 ~l~~L~l~~n~------i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 102 (192)
T 1w8a_A 30 HTTELLLNDNE------LGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH 102 (192)
T ss_dssp TCSEEECCSCC------CCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT
T ss_pred CCCEEECCCCc------CCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCC
Confidence 78888887764 2222222 2678888999999988 67666 67788889999999999988877554 78889
Q ss_pred CCcEEecCCCccccccccccCCCCcccEEeccCCc
Q 044195 641 NLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNSNVH 675 (1024)
Q Consensus 641 ~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 675 (1024)
+|++|++++|......|..+..+++|++|++++|.
T Consensus 103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 99999999884333446778888999999998887
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.79 E-value=7.4e-11 Score=118.40 Aligned_cols=85 Identities=24% Similarity=0.258 Sum_probs=40.8
Q ss_pred hhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCcccccccc--ccCCCCc
Q 044195 588 LLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCK--DMGNLTK 665 (1024)
Q Consensus 588 ~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~ 665 (1024)
.+..+++|++|+|++| .+..+|..+..+++|++|++++|.++.+| .+..+++|++|++++| .+..+|. .+..+++
T Consensus 65 ~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~ 141 (198)
T 1ds9_A 65 SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDK 141 (198)
T ss_dssp CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTT
T ss_pred ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCC
Confidence 3344445555555555 34445444444455555555555554444 3444555555555554 3333332 3445555
Q ss_pred ccEEeccCCc
Q 044195 666 LHHLRNSNVH 675 (1024)
Q Consensus 666 L~~L~l~~~~ 675 (1024)
|++|++++|.
T Consensus 142 L~~L~l~~N~ 151 (198)
T 1ds9_A 142 LEDLLLAGNP 151 (198)
T ss_dssp CSEEEECSCH
T ss_pred CCEEEecCCc
Confidence 5555555554
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.79 E-value=4.2e-11 Score=120.17 Aligned_cols=103 Identities=20% Similarity=0.257 Sum_probs=87.7
Q ss_pred hhhCCCCceEEEEeCCCCCcccCCccccCCCCCcEeeccCCCccccCcccccCCCCcEEecCCCccccccccccCCCCcc
Q 044195 587 QLLLDLPRLRVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQILPQSINSLYNLHTVLLEDCRRLKKLCKDMGNLTKL 666 (1024)
Q Consensus 587 ~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L 666 (1024)
..+..+++|++|+|++| .+..+| .+.++++|++|++++|.++.+|..+..+++|++|++++| .+..+| .++.+++|
T Consensus 42 ~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L 117 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNL 117 (198)
T ss_dssp HHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHS
T ss_pred HHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCC
Confidence 36778899999999999 788888 889999999999999999999988888899999999998 777777 68899999
Q ss_pred cEEeccCCccccccCc--cCCCCCCCCccC
Q 044195 667 HHLRNSNVHSLEEMPK--GFGKLTCLTTLC 694 (1024)
Q Consensus 667 ~~L~l~~~~~l~~~p~--~i~~l~~L~~L~ 694 (1024)
++|++++|. +..+|. .++.+++|+.|.
T Consensus 118 ~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 118 RVLYMSNNK-ITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp SEEEESEEE-CCCHHHHHHHTTTTTCSEEE
T ss_pred CEEECCCCc-CCchhHHHHHhcCCCCCEEE
Confidence 999999998 776654 567777777763
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.79 E-value=1e-08 Score=99.61 Aligned_cols=93 Identities=26% Similarity=0.426 Sum_probs=48.4
Q ss_pred EEEEeCCCCCcccCCccccCCCCCcEeeccCCCcccc-CcccccCCCCcEEecCCCccccccccc-cCCCCcccEEeccC
Q 044195 596 RVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQIL-PQSINSLYNLHTVLLEDCRRLKKLCKD-MGNLTKLHHLRNSN 673 (1024)
Q Consensus 596 ~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~ 673 (1024)
+++++++| .+..+|..+. .+|++|+|++|.++.+ |..+..+++|++|++++| .+..+|.. +.++++|++|++++
T Consensus 12 ~~l~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGK-SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCC-CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 34555555 4555554442 4555555555555554 334555555555555555 44444443 35555555555555
Q ss_pred CccccccCcc-CCCCCCCCcc
Q 044195 674 VHSLEEMPKG-FGKLTCLTTL 693 (1024)
Q Consensus 674 ~~~l~~~p~~-i~~l~~L~~L 693 (1024)
|. +..+|.. +..+++|+.|
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEE
T ss_pred Cc-cCEeCHHHhcCCCCCCEE
Confidence 55 4444443 4455555554
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.78 E-value=1.2e-08 Score=100.17 Aligned_cols=98 Identities=29% Similarity=0.473 Sum_probs=48.0
Q ss_pred CceEEEEeCCCCCcccCCc-cccCCCCCcEeeccCCCccccCcc-cccCCCCcEEecCCCccccccccc-cCCCCcccEE
Q 044195 593 PRLRVFSLCGYCNIIDLPN-EIGNLKHLRFLNLSRTNIQILPQS-INSLYNLHTVLLEDCRRLKKLCKD-MGNLTKLHHL 669 (1024)
Q Consensus 593 ~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L 669 (1024)
++|++|++++| .+..+|. .++++++|++|++++|.++.+|.. +..+++|++|++++| .+..+|.. +..+++|++|
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEE
Confidence 34555555555 3444442 234555555555555555554433 345555555555555 34444332 3455555555
Q ss_pred eccCCccccccCcc-CCCCCCCCcc
Q 044195 670 RNSNVHSLEEMPKG-FGKLTCLTTL 693 (1024)
Q Consensus 670 ~l~~~~~l~~~p~~-i~~l~~L~~L 693 (1024)
++++|. +..+|.. +..+++|+.|
T Consensus 106 ~l~~N~-l~~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 106 ALDTNQ-LKSVPDGIFDRLTSLQKI 129 (177)
T ss_dssp ECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred ECcCCc-ceEeCHHHhcCCcccCEE
Confidence 555554 4444443 2444445444
No 154
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.76 E-value=6.4e-08 Score=102.32 Aligned_cols=174 Identities=10% Similarity=0.027 Sum_probs=105.2
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhc---cC--CceEEEEecCCCCHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQR---RF--QIKAWTFVSEDFNVFRV 255 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~---~f--~~~~wv~~~~~~~~~~~ 255 (1024)
..+.||++++++|...|...- .++..+.+.|+|++|+|||++|+.+++...... .. -..+++++....+...+
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHH
T ss_pred cccCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHH
Confidence 348899999999998887643 234667899999999999999999998432111 11 13567777777888899
Q ss_pred HHHHHHhccCCCCCCC-cHHHHHHHHHHH--hCCCceeEEeeccCCCC-HHHHHHhhcCCCCCCCCcEEEEEcCCchhh-
Q 044195 256 TKSILKSITNDQSKDD-DLNWVQEKLKKQ--LSGKKFLLVLDDVWNEN-YEYWSIFSRPFGAGAPGSKIVVTTRNLRVT- 330 (1024)
Q Consensus 256 ~~~il~~l~~~~~~~~-~~~~~~~~l~~~--l~~~~~LlVlDd~~~~~-~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~- 330 (1024)
+..|++++.+...... ..+.+...+... -.++++++|||+++.-. ++..-.+............||.++...+..
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 9999999965432222 223333333221 24678999999995532 122222221110111122334444432211
Q ss_pred --------hccCCccceecCCCChHhHHHHHHhhh
Q 044195 331 --------VNMGADQAYQLKELSNDDCLCLLTQIS 357 (1024)
Q Consensus 331 --------~~~~~~~~~~l~~L~~~ea~~lf~~~a 357 (1024)
..+ ....+.++|.+.+|..+++..++
T Consensus 178 ~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 178 EQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHH
Confidence 111 12468999999999999998765
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.75 E-value=1.5e-08 Score=98.76 Aligned_cols=98 Identities=23% Similarity=0.404 Sum_probs=84.1
Q ss_pred EEEEeCCCCCcccCCccccCCCCCcEeeccCCCcccc-CcccccCCCCcEEecCCCccccccccc-cCCCCcccEEeccC
Q 044195 596 RVFSLCGYCNIIDLPNEIGNLKHLRFLNLSRTNIQIL-PQSINSLYNLHTVLLEDCRRLKKLCKD-MGNLTKLHHLRNSN 673 (1024)
Q Consensus 596 ~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~ 673 (1024)
+.++++++ .+..+|..+. .+|++|+|++|.++.+ |..+.++++|++|++++| .+..+|.. +.++++|++|++++
T Consensus 15 ~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 68899998 7899998775 8999999999999987 567899999999999998 78888876 58999999999999
Q ss_pred CccccccCcc-CCCCCCCCccCceee
Q 044195 674 VHSLEEMPKG-FGKLTCLTTLCRFVV 698 (1024)
Q Consensus 674 ~~~l~~~p~~-i~~l~~L~~L~~~~~ 698 (1024)
|. +..+|.. ++.+++|+.|....+
T Consensus 91 N~-l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 91 NH-LKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp SC-CCCCCTTTTTTCTTCSEEECCSS
T ss_pred Cc-cceeCHHHhccccCCCEEEeCCC
Confidence 98 8888876 888899988855443
No 156
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.73 E-value=2.2e-08 Score=98.22 Aligned_cols=106 Identities=22% Similarity=0.262 Sum_probs=87.2
Q ss_pred CCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCCcc-ccCCCCCcEeeccCCCccccCcc-cccC
Q 044195 562 VQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLPNE-IGNLKHLRFLNLSRTNIQILPQS-INSL 639 (1024)
Q Consensus 562 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~L~~~~i~~lp~~-i~~L 639 (1024)
.++|+.|.+.++. +.......+..+++|++|+|++| .+..+|.. +..+++|++|++++|.++.+|.. +..+
T Consensus 27 ~~~l~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 99 (177)
T 2o6r_A 27 PSSATRLELESNK------LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL 99 (177)
T ss_dssp CTTCSEEECCSSC------CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCcEEEeCCCc------ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccCHHHhhCC
Confidence 3689999988775 33333334688999999999999 78888754 68999999999999999988765 6889
Q ss_pred CCCcEEecCCCccccccccc-cCCCCcccEEeccCCc
Q 044195 640 YNLHTVLLEDCRRLKKLCKD-MGNLTKLHHLRNSNVH 675 (1024)
Q Consensus 640 ~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 675 (1024)
++|++|++++| .+..+|.. +..+++|++|++++|.
T Consensus 100 ~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 100 TQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 99999999998 77778766 5789999999999997
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.73 E-value=4.5e-08 Score=106.88 Aligned_cols=182 Identities=14% Similarity=0.125 Sum_probs=113.0
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccC-CceEEEEecCCCCHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF-QIKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~il 260 (1024)
+++|++..++.+..++... ..+.+.|+|++|+|||++|+.+++... ...+ ...+.++.+..... ..++..+
T Consensus 26 ~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~~~~~~ 97 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGI-NVIREKV 97 (327)
T ss_dssp TCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHH-HTTHHHH
T ss_pred HhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCch-HHHHHHH
Confidence 4899999999999998754 233589999999999999999997321 1111 12233333221111 0011111
Q ss_pred HhccCCCCCCCcHHHHHHHHHHH--h-CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchh-hhcc-CC
Q 044195 261 KSITNDQSKDDDLNWVQEKLKKQ--L-SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRV-TVNM-GA 335 (1024)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~-~~~~-~~ 335 (1024)
. ..... + .+++.++|+||++.-....++.+...+.....++++|+||..... ...+ ..
T Consensus 98 ~-----------------~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 98 K-----------------EFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp H-----------------HHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred H-----------------HHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 0 11110 1 256889999999776666666666555444456788888876432 1111 12
Q ss_pred ccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHh
Q 044195 336 DQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGG 392 (1024)
Q Consensus 336 ~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 392 (1024)
...+.+.+++.++...++...+....- .-..+..+.|++.++|.|..+..+..
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGL----ELTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTC----EECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 347899999999999999876543221 12236677899999999986554433
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.65 E-value=4.3e-08 Score=95.11 Aligned_cols=82 Identities=27% Similarity=0.408 Sum_probs=73.0
Q ss_pred CCceEEEEeCCCCCcccC-CccccCCCCCcEeeccCCCccccCcc-cccCCCCcEEecCCCccccccccc-cCCCCcccE
Q 044195 592 LPRLRVFSLCGYCNIIDL-PNEIGNLKHLRFLNLSRTNIQILPQS-INSLYNLHTVLLEDCRRLKKLCKD-MGNLTKLHH 668 (1024)
Q Consensus 592 l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~ 668 (1024)
.++|++|+|++| .+..+ |..+.++++|++|+|++|.++.+|.. +..+++|++|++++| .+..+|.. +..+++|++
T Consensus 29 ~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 106 (170)
T 3g39_A 29 PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTH 106 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCE
Confidence 378999999999 78887 57789999999999999999998876 589999999999998 77778764 889999999
Q ss_pred EeccCCc
Q 044195 669 LRNSNVH 675 (1024)
Q Consensus 669 L~l~~~~ 675 (1024)
|++++|.
T Consensus 107 L~L~~N~ 113 (170)
T 3g39_A 107 IWLLNNP 113 (170)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9999997
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.63 E-value=2.2e-07 Score=103.47 Aligned_cols=194 Identities=16% Similarity=0.162 Sum_probs=112.1
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
+++|++..++.+..++.... ....+.|+|++|+||||+|+.+++.......+.. ..+... .....+..
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~----~~~~~~~~ 84 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC----DNCREIEQ 84 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS----HHHHHHHT
T ss_pred hccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc----HHHHHHhc
Confidence 49999999999999997642 2347889999999999999999863211111100 000000 00111111
Q ss_pred h-------ccCCC-CCCCcHHHHHHHHHHH-hCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCch-hhh
Q 044195 262 S-------ITNDQ-SKDDDLNWVQEKLKKQ-LSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLR-VTV 331 (1024)
Q Consensus 262 ~-------l~~~~-~~~~~~~~~~~~l~~~-l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~-~~~ 331 (1024)
. +.... ........+...+... ..+++.++|+||++.-+...++.+...+.....+..+|++|.... +..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 164 (373)
T 1jr3_A 85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (373)
T ss_dssp SCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCH
T ss_pred cCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcH
Confidence 0 00000 1112222222221110 135678999999977665566666555544445667777776432 211
Q ss_pred c-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044195 332 N-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLG 391 (1024)
Q Consensus 332 ~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 391 (1024)
. ......+.+.+++.++..+++...+...+. .. ..+.+..|++.++|.|..+..+.
T Consensus 165 ~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~-~~---~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 165 TILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AH---EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CB---CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHCCCCHHHHHHHH
Confidence 1 123467899999999999999876432111 11 13567789999999998776554
No 160
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.62 E-value=1.6e-07 Score=102.14 Aligned_cols=181 Identities=12% Similarity=0.104 Sum_probs=112.6
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCC-ceEEEEecCCCCHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQ-IKAWTFVSEDFNVFRVTKSI 259 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 259 (1024)
.+++|++..++.+.+++... ..+.+.|+|++|+|||++|+.+++... ...+. ..+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~-------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG-------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC--------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC--------
Confidence 35899999999988887532 333489999999999999999987311 11111 223344333211
Q ss_pred HHhccCCCCCCCcHHHHHHHHHHH--h-CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCch-hhhc-cC
Q 044195 260 LKSITNDQSKDDDLNWVQEKLKKQ--L-SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLR-VTVN-MG 334 (1024)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~-~~~~-~~ 334 (1024)
..........+... + .+++.++|+|+++.-.....+.+...+.....+.++|+||.... +... ..
T Consensus 82 ----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 82 ----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp ----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred ----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 01111111111111 1 25688999999977666666777776665556778888876543 1111 12
Q ss_pred CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044195 335 ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTL 390 (1024)
Q Consensus 335 ~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 390 (1024)
....+.+.+++.++...++...+...+- . -..+....|++.++|.+..+...
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~-~---i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGV-K---ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCC-C---BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3357999999999999999876543221 1 12356778899999999765443
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.47 E-value=1.2e-07 Score=90.26 Aligned_cols=85 Identities=7% Similarity=0.019 Sum_probs=55.2
Q ss_pred CCccEEEEecccCcc---ccCCCCCCcCEEEEccCCCccccCCC---C----CCCccEEEEcCCCCcccchhhhcCCCCC
Q 044195 912 LLLEKLVIQSCKQLL---VTIQCLPALSELQIRGCRRVVFSSPI---D----FSSLKSVFLGDIANQVVLAALFEQGLPQ 981 (1024)
Q Consensus 912 ~~L~~L~l~~c~~l~---~~l~~l~~L~~L~l~~~~~l~~~~~~---~----l~~L~~L~l~~c~~l~~l~~~~l~~l~~ 981 (1024)
.+|++|++++|.... ..+..+++|++|++++|..++..... . .++|++|+|++|+.+++-....+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468888888886222 23456777777777777766543221 1 2357777777777777766555666777
Q ss_pred CCEEeeecCCCCCcc
Q 044195 982 LESLKIDSVRAPTYL 996 (1024)
Q Consensus 982 L~~L~l~~c~~l~~l 996 (1024)
|+.|++++|+.++..
T Consensus 141 L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEK 155 (176)
T ss_dssp CCEEEEESCTTCCCH
T ss_pred CCEEECCCCCCCCch
Confidence 777777777776653
No 162
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.47 E-value=3.7e-07 Score=90.84 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=37.6
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
.++||+++++++.+++... ..+.+.|+|++|+|||++|+.+++.
T Consensus 23 ~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 23 PVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999998542 3456889999999999999999873
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.45 E-value=6.5e-06 Score=92.06 Aligned_cols=76 Identities=12% Similarity=0.055 Sum_probs=48.2
Q ss_pred cCCCCCCcCEEEEccCCCccccCC---CCCCCccEEEEcCCCCcccchhhhcCCCCCCCEEeeecCCCCCcccccccccc
Q 044195 928 TIQCLPALSELQIRGCRRVVFSSP---IDFSSLKSVFLGDIANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSETRLL 1004 (1024)
Q Consensus 928 ~l~~l~~L~~L~l~~~~~l~~~~~---~~l~~L~~L~l~~c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l 1004 (1024)
.+..+++|+.+.|... ++.+.. ..+.+|+.+.+.. .++.++...+.+|++|+.+.+... ++.+ ...+
T Consensus 315 aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~--~~~~----~~~F 384 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKR--LEQY----RYDF 384 (394)
T ss_dssp TTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGG--GGGG----GGGB
T ss_pred hhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCC--CEEh----hhee
Confidence 4555666666666432 333333 3455777777753 377788788889999999988653 4444 2356
Q ss_pred cCCCCCCEE
Q 044195 1005 QDIRSLNRL 1013 (1024)
Q Consensus 1005 ~~l~~L~~L 1013 (1024)
.++++|+.+
T Consensus 385 ~~c~~L~~I 393 (394)
T 4fs7_A 385 EDTTKFKWI 393 (394)
T ss_dssp CTTCEEEEE
T ss_pred cCCCCCcEE
Confidence 777777665
No 164
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.41 E-value=6.8e-06 Score=89.77 Aligned_cols=177 Identities=14% Similarity=0.134 Sum_probs=104.9
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (1024)
.+++|++..++++..++..... .+.....|.|+|++|+|||++|+++++ +.... .+.++++......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~---~~~~~~~~~~~~~------- 95 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISY--EMSAN---IKTTAAPMIEKSG------- 95 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCC---EEEEEGGGCCSHH-------
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCC---eEEecchhccchh-------
Confidence 4599999999999888875311 112345689999999999999999987 33222 2333332221111
Q ss_pred HhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCC------------------CCCcEEEE
Q 044195 261 KSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAG------------------APGSKIVV 322 (1024)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~------------------~~gs~ilv 322 (1024)
.....+.. ..+..+|+||++..-.......+...+... .++..+|.
T Consensus 96 --------------~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 96 --------------DLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp --------------HHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred --------------HHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 11111111 246679999999765544444443322211 11345666
Q ss_pred EcCCchh-hhc-cCC-ccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044195 323 TTRNLRV-TVN-MGA-DQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTL 390 (1024)
Q Consensus 323 TtR~~~~-~~~-~~~-~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 390 (1024)
||..... ... ... ...+.+.+++.++...++...+.... ..-..+..+.|++.+.|.|-.+..+
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~----~~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN----KTCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT----CEECHHHHHHHHHTTTTCHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCcCHHHHHHH
Confidence 6654321 111 112 25789999999999999987653221 1122366778889999999655444
No 165
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.39 E-value=1.6e-07 Score=97.29 Aligned_cols=173 Identities=16% Similarity=0.109 Sum_probs=99.2
Q ss_pred ccccc---hhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHH
Q 044195 182 KVYGR---EKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKS 258 (1024)
Q Consensus 182 ~~vGr---~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (1024)
.|+|+ +..++.+..+.... ..+.+.|+|++|+||||+|+.+++ ........++|++++.....
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~~------ 94 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLGIHASI------ 94 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGGGGGGS------
T ss_pred hccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHHHHHHH------
Confidence 46663 34556666665432 346889999999999999999997 33333345667765432110
Q ss_pred HHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHH--HHHhhcCCCCC-CCC-cEEEEEcCCchh-----
Q 044195 259 ILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEY--WSIFSRPFGAG-APG-SKIVVTTRNLRV----- 329 (1024)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~--~~~l~~~~~~~-~~g-s~ilvTtR~~~~----- 329 (1024)
+. . .+ +.+ .++.+|||||++...... .+.+...+... ..+ .++|+||+....
T Consensus 95 ----~~------~-------~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~ 155 (242)
T 3bos_A 95 ----ST------A-------LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFV 155 (242)
T ss_dssp ----CG------G-------GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCC
T ss_pred ----HH------H-------HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHh
Confidence 00 0 00 001 346799999996532222 22232221110 112 247777764321
Q ss_pred ----hhccCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044195 330 ----TVNMGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLG 391 (1024)
Q Consensus 330 ----~~~~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 391 (1024)
...+.....+.+.+++.++..+++...+..... .. ..+....|++.++|.+-.+..+.
T Consensus 156 ~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 156 LPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QL---PEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CC---CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHccCCHHHHHHHH
Confidence 111111257899999999999999886532211 11 23667789999999987665543
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.38 E-value=5.8e-07 Score=98.88 Aligned_cols=85 Identities=16% Similarity=0.146 Sum_probs=42.5
Q ss_pred hCCCCceEEEEeCC-CCCcccCC-ccccCCCCCcEeeccCCCccccCc-ccccCCCCcEEecCCCccccccccccCCCCc
Q 044195 589 LLDLPRLRVFSLCG-YCNIIDLP-NEIGNLKHLRFLNLSRTNIQILPQ-SINSLYNLHTVLLEDCRRLKKLCKDMGNLTK 665 (1024)
Q Consensus 589 l~~l~~L~~L~L~~-~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~ 665 (1024)
|..+.+|++|+|++ | .+..+| ..|++|++|++|+|++|.|+.+|+ .|.+|++|++|+|++| .+..+|..+....+
T Consensus 27 l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~ 104 (347)
T 2ifg_A 27 LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLS 104 (347)
T ss_dssp SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCC
T ss_pred CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCC
Confidence 45555555555553 4 454444 345555555555555555554432 3455555555555555 44444443322222
Q ss_pred ccEEeccCCc
Q 044195 666 LHHLRNSNVH 675 (1024)
Q Consensus 666 L~~L~l~~~~ 675 (1024)
|+.|++.+|.
T Consensus 105 L~~l~l~~N~ 114 (347)
T 2ifg_A 105 LQELVLSGNP 114 (347)
T ss_dssp CCEEECCSSC
T ss_pred ceEEEeeCCC
Confidence 5555555554
No 167
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.38 E-value=1.3e-06 Score=96.46 Aligned_cols=194 Identities=14% Similarity=0.099 Sum_probs=111.0
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCC-ceEEEEecCCCCHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQ-IKAWTFVSEDFNVFRVTKSI 259 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 259 (1024)
.+++|++..++.+..++... ..+.+.|+|++|+||||+|+.+++.......+. ..+.++.+.......+ ++.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTH
T ss_pred HHhhCCHHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHH
Confidence 35899999999999888543 223389999999999999999997321111122 2333444433232222 222
Q ss_pred HHhccCC-CCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCch-hhhcc-CCc
Q 044195 260 LKSITND-QSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLR-VTVNM-GAD 336 (1024)
Q Consensus 260 l~~l~~~-~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~-~~~~~-~~~ 336 (1024)
+...... ....... .....-.+++-+|++|++..-.....+.+...+.......++|++|.... +...+ ...
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 2211110 0000000 00011123556999999976555555555544443334567777775432 21111 122
Q ss_pred cceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044195 337 QAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTL 390 (1024)
Q Consensus 337 ~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 390 (1024)
..+.+.+++.++....+...+....- ..+ ++..+.|++.++|.|-.+..+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~---~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENV-KCD---DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHHHHHHHTSSCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCC-CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 47889999999999998876533211 122 366788999999999865443
No 168
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.31 E-value=7e-07 Score=98.19 Aligned_cols=97 Identities=15% Similarity=0.098 Sum_probs=78.5
Q ss_pred EEEeCCCCCcccCCccccCCCCCcEeeccC-CCccccC-cccccCCCCcEEecCCCcccccccc-ccCCCCcccEEeccC
Q 044195 597 VFSLCGYCNIIDLPNEIGNLKHLRFLNLSR-TNIQILP-QSINSLYNLHTVLLEDCRRLKKLCK-DMGNLTKLHHLRNSN 673 (1024)
Q Consensus 597 ~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~-~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~ 673 (1024)
.+++++++.+..+|. ++.+.+|++|+|++ |.++.+| ..|..|++|++|+|++| .+..+|. .|.+|++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 347776546888999 99999999999996 9999887 56899999999999999 6666654 679999999999999
Q ss_pred CccccccCccCCCCCCCCccCce
Q 044195 674 VHSLEEMPKGFGKLTCLTTLCRF 696 (1024)
Q Consensus 674 ~~~l~~~p~~i~~l~~L~~L~~~ 696 (1024)
|. +..+|..+.....|+.|...
T Consensus 90 N~-l~~~~~~~~~~~~L~~l~l~ 111 (347)
T 2ifg_A 90 NA-LESLSWKTVQGLSLQELVLS 111 (347)
T ss_dssp SC-CSCCCSTTTCSCCCCEEECC
T ss_pred Cc-cceeCHHHcccCCceEEEee
Confidence 98 88888775544447777443
No 169
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.30 E-value=8.8e-06 Score=90.14 Aligned_cols=198 Identities=14% Similarity=0.085 Sum_probs=107.5
Q ss_pred CccccchhhHHHH---HHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEec----CCCCHH
Q 044195 181 AKVYGREKDKEAI---VELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVS----EDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l---~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~----~~~~~~ 253 (1024)
..+||++..++.+ ...+.... ...+.+.|+|++|+|||++|+++++. ..... ..+.+... ......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~--l~~~~-~~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDT-PFTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSC-CEEEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH--hcccC-Ccccccchhhhhcccchh
Confidence 4699999887664 44444321 22468999999999999999999973 32211 11222221 123333
Q ss_pred HHHHHHHHhccCCC----------------------------CC--CCcHHHHHHHHHHHh-----CCC----ceeEEee
Q 044195 254 RVTKSILKSITNDQ----------------------------SK--DDDLNWVQEKLKKQL-----SGK----KFLLVLD 294 (1024)
Q Consensus 254 ~~~~~il~~l~~~~----------------------------~~--~~~~~~~~~~l~~~l-----~~~----~~LlVlD 294 (1024)
+.+.+.+....+.. .. ......+...+.... .++ +.+|+||
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 44444433311100 00 000122222222211 233 4699999
Q ss_pred ccCCCCHHHHHHhhcCCCCCCCCcEEEEEcC-Cc------------hhh-hccCCccceecCCCChHhHHHHHHhhhcCC
Q 044195 295 DVWNENYEYWSIFSRPFGAGAPGSKIVVTTR-NL------------RVT-VNMGADQAYQLKELSNDDCLCLLTQISLGT 360 (1024)
Q Consensus 295 d~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR-~~------------~~~-~~~~~~~~~~l~~L~~~ea~~lf~~~a~~~ 360 (1024)
++..-.....+.+...+...... .++++|. .. .+. ........+.+++++.++..+++...+...
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHc
Confidence 99776666666666655544333 3444443 11 010 111223458999999999999998765432
Q ss_pred CCCCCCccHHHHHHHHHHHcC-CChHHHHHH
Q 044195 361 GDFNIHPSLKEVGEKIVMKCK-GLPLAAKTL 390 (1024)
Q Consensus 361 ~~~~~~~~~~~~~~~i~~~~~-g~PLai~~~ 390 (1024)
.. . -..+..+.|++.+. |.|-.+..+
T Consensus 276 ~~-~---~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 276 DV-E---MSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp TC-C---BCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CC-C---CCHHHHHHHHHHhcCCCHHHHHHH
Confidence 11 1 12356777888887 887655444
No 170
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.30 E-value=3.7e-06 Score=94.72 Aligned_cols=181 Identities=15% Similarity=0.121 Sum_probs=104.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCC--ceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQ--IKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLS 285 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (1024)
...+.|+|++|+||||||+++++ .....+. .++++++. .+..++...+... . ...+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~----~~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----K----LNEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----C----HHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----c----HHHHHHHhc
Confidence 56899999999999999999998 4444432 34555433 2333444443321 1 112333444
Q ss_pred CCceeEEeeccCCCCH--HHHHHhhcCCCC-CCCCcEEEEEcCCchh---------hhccCCccceecCCCChHhHHHHH
Q 044195 286 GKKFLLVLDDVWNENY--EYWSIFSRPFGA-GAPGSKIVVTTRNLRV---------TVNMGADQAYQLKELSNDDCLCLL 353 (1024)
Q Consensus 286 ~~~~LlVlDd~~~~~~--~~~~~l~~~~~~-~~~gs~ilvTtR~~~~---------~~~~~~~~~~~l~~L~~~ea~~lf 353 (1024)
.++.+|+|||++.-.. ...+.+...+.. ...|..||+||..... ...+.....+.+++++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 4678999999965321 222333322211 1246788888876321 122333357899999999999999
Q ss_pred HhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHhhh------cCC-CChhHHHHHHhc
Q 044195 354 TQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLGGLL------RGK-HDPRDWEFVLNN 409 (1024)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l------~~~-~~~~~w~~~l~~ 409 (1024)
...+.... ...++ +....|++.++|.+-.+.-+...+ .+. -+.+.+..++..
T Consensus 273 ~~~~~~~~-~~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 273 RKMLEIEH-GELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHHT-CCCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHHHcC-CCCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 88753211 11222 456678899999886544332211 122 345566666554
No 171
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.30 E-value=1e-05 Score=87.69 Aligned_cols=171 Identities=13% Similarity=0.068 Sum_probs=103.6
Q ss_pred hhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhc-------------------cCCceEEEEec
Q 044195 187 EKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQR-------------------RFQIKAWTFVS 247 (1024)
Q Consensus 187 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~~wv~~~ 247 (1024)
++..+.+...+... .-...+.++|++|+|||++|+.++....-.. ......++...
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~ 82 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPE 82 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc
Confidence 45566777777543 2345789999999999999999986211000 00112222211
Q ss_pred CCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHh-----CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEE
Q 044195 248 EDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQL-----SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVV 322 (1024)
Q Consensus 248 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilv 322 (1024)
. .......+.+. .+.+.+ .+++-++|+|+++.-+....+.+...+.....+..+|+
T Consensus 83 ~------------------~~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 83 K------------------GKNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp T------------------TCSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred c------------------cCCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 0 00111222222 222222 34677999999977666666666666655545677777
Q ss_pred EcCCch-hhhc-cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044195 323 TTRNLR-VTVN-MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTL 390 (1024)
Q Consensus 323 TtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 390 (1024)
+|...+ +... ......+.++++++++..+.+...+ ..+ .+.+..+++.++|.|..+..+
T Consensus 144 ~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~------~~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 144 ATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV------TMS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC------CCC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred EeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc------CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 776543 2221 1344679999999999999998764 111 255677999999999766544
No 172
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.29 E-value=3.9e-06 Score=94.22 Aligned_cols=178 Identities=20% Similarity=0.189 Sum_probs=101.3
Q ss_pred CccccchhhH---HHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHH
Q 044195 181 AKVYGREKDK---EAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTK 257 (1024)
Q Consensus 181 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (1024)
.++||.+..+ ..+...+... ....+.|+|++|+||||+|+.+++ .....| +.++........++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~--~~~~~f-----~~l~a~~~~~~~ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIAR--YANADV-----ERISAVTSGVKEIR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHH--HTTCEE-----EEEETTTCCHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHH--HhCCCe-----EEEEeccCCHHHHH
Confidence 3588888777 6777777654 346899999999999999999997 333222 22222111111111
Q ss_pred HHHHhccCCCCCCCcHHHHHHHHH-HHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEE-EcCCch--hh-hc
Q 044195 258 SILKSITNDQSKDDDLNWVQEKLK-KQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVV-TTRNLR--VT-VN 332 (1024)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilv-TtR~~~--~~-~~ 332 (1024)
.++ .... ....+++.+|+||+++.-.....+.+...+..+ ...+|. ||.+.. +. ..
T Consensus 93 ~~~-----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 93 EAI-----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHH-----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHH
T ss_pred HHH-----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHH
Confidence 111 1111 112567889999999765444444444444332 233443 555432 11 11
Q ss_pred cCCccceecCCCChHhHHHHHHhhhcCCCCC---CCCccHHHHHHHHHHHcCCChHHHHHH
Q 044195 333 MGADQAYQLKELSNDDCLCLLTQISLGTGDF---NIHPSLKEVGEKIVMKCKGLPLAAKTL 390 (1024)
Q Consensus 333 ~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~---~~~~~~~~~~~~i~~~~~g~PLai~~~ 390 (1024)
.....++.+++++.++...++...+...... ....-..+..+.|++.++|.+-.+..+
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 2334578899999999999988765431110 111123466778889999988655443
No 173
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.28 E-value=1.4e-05 Score=88.98 Aligned_cols=98 Identities=15% Similarity=0.134 Sum_probs=62.6
Q ss_pred hhCCCCceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCccccC-cccccCCCCcEEecCCCccccccccccCCCCc
Q 044195 588 LLLDLPRLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQILP-QSINSLYNLHTVLLEDCRRLKKLCKDMGNLTK 665 (1024)
Q Consensus 588 ~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~ 665 (1024)
.|.++ +|+.+.+..+ +..++ ..+.+ .+|+.+.+.. .++.++ ..+..+.+|+.+++.+| .+..+|...-...+
T Consensus 131 aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~ 204 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAG 204 (401)
T ss_dssp TTTTC-CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCC
T ss_pred hcccC-CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecc
Confidence 34444 5777777655 66665 33444 4688888875 566654 45777888888888776 66777765445678
Q ss_pred ccEEeccCCccccccCcc-CCCCCCCCcc
Q 044195 666 LHHLRNSNVHSLEEMPKG-FGKLTCLTTL 693 (1024)
Q Consensus 666 L~~L~l~~~~~l~~~p~~-i~~l~~L~~L 693 (1024)
|+.+.+..+ +..++.. +..+.+|+.+
T Consensus 205 L~~l~lp~~--l~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 205 IEEVLLPVT--LKEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp CSEEECCTT--CCEECTTTTTTCTTCCCE
T ss_pred cCEEEeCCc--hheehhhHhhCCCCCCEE
Confidence 888877643 4555443 5556666655
No 174
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.27 E-value=2.3e-05 Score=87.48 Aligned_cols=120 Identities=17% Similarity=0.130 Sum_probs=81.3
Q ss_pred CcccceeeeccCcC-CcccCCCCCCCccEEEEecccCccccCCCCCCcCEEEEccCCCccccCC---CCCCCccEEEEcC
Q 044195 889 FPKLRKLSLLRCSK-LQGTLPERLLLLEKLVIQSCKQLLVTIQCLPALSELQIRGCRRVVFSSP---IDFSSLKSVFLGD 964 (1024)
Q Consensus 889 ~~~L~~L~l~~c~~-L~~~lp~~l~~L~~L~l~~c~~l~~~l~~l~~L~~L~l~~~~~l~~~~~---~~l~~L~~L~l~~ 964 (1024)
+.+|+.+.+..+.. +....-..+..++.+.......-...+..+.+|+.+.+..+ ++.++. ..+.+|+.++|.
T Consensus 252 ~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp- 328 (394)
T 4fs7_A 252 CTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLP- 328 (394)
T ss_dssp CSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCC-
T ss_pred cccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc--cceechhhhcCCCCCCEEEeC-
Confidence 56677777655311 11011134566666666544322245778889999998654 444444 456689999996
Q ss_pred CCCcccchhhhcCCCCCCCEEeeecCCCCCcccccccccccCCCCCCEEeeeC
Q 044195 965 IANQVVLAALFEQGLPQLESLKIDSVRAPTYLWQSETRLLQDIRSLNRLHISR 1017 (1024)
Q Consensus 965 c~~l~~l~~~~l~~l~~L~~L~l~~c~~l~~l~~~~p~~l~~l~~L~~L~l~~ 1017 (1024)
+.++.++...+.+|++|+.+.+.. +++.++ ...+.++++|+.+++..
T Consensus 329 -~~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~---~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 329 -YLVEEIGKRSFRGCTSLSNINFPL--SLRKIG---ANAFQGCINLKKVELPK 375 (394)
T ss_dssp -TTCCEECTTTTTTCTTCCEECCCT--TCCEEC---TTTBTTCTTCCEEEEEG
T ss_pred -CcccEEhHHhccCCCCCCEEEECc--cccEeh---HHHhhCCCCCCEEEECC
Confidence 358888888999999999999964 377774 34789999999998854
No 175
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=5.8e-07 Score=85.50 Aligned_cols=86 Identities=13% Similarity=0.005 Sum_probs=49.9
Q ss_pred CCcCEEEEccCCCcccc---CCCCCCCccEEEEcCCCCcccchhhhcCCC----CCCCEEeeecCCCCCccccccccccc
Q 044195 933 PALSELQIRGCRRVVFS---SPIDFSSLKSVFLGDIANQVVLAALFEQGL----PQLESLKIDSVRAPTYLWQSETRLLQ 1005 (1024)
Q Consensus 933 ~~L~~L~l~~~~~l~~~---~~~~l~~L~~L~l~~c~~l~~l~~~~l~~l----~~L~~L~l~~c~~l~~l~~~~p~~l~ 1005 (1024)
..|++|++++|. ++.. ....+++|++|++++|..+++-....+..+ ++|++|+|++|++++.-... .+.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~---~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII---ALH 136 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH---HGG
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH---HHh
Confidence 356666666665 3322 124566666666666666666544444332 35666666666666654332 345
Q ss_pred CCCCCCEEeeeCCCCCc
Q 044195 1006 DIRSLNRLHISRCPQLI 1022 (1024)
Q Consensus 1006 ~l~~L~~L~l~~c~~L~ 1022 (1024)
.+++|++|+|++||+++
T Consensus 137 ~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GCTTCCEEEEESCTTCC
T ss_pred cCCCCCEEECCCCCCCC
Confidence 56666666666666654
No 176
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.23 E-value=6.2e-05 Score=83.64 Aligned_cols=256 Identities=9% Similarity=0.084 Sum_probs=151.4
Q ss_pred CCCceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCccccCcc-cccCCCCcEEecCCCccccccc-cccCCCCccc
Q 044195 591 DLPRLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQILPQS-INSLYNLHTVLLEDCRRLKKLC-KDMGNLTKLH 667 (1024)
Q Consensus 591 ~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~ 667 (1024)
.+..++.+.+..+ +..++ ..+.++ +|+.+.+..+ ++.++.. |.+ .+|+.+.+.. .+..++ ..+.++++|+
T Consensus 111 ~~~~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 111 ILKGYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp ECSSCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCC
T ss_pred ecCCccEEEECCc--cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCC
Confidence 3466777777654 66665 445554 7999999876 7777643 555 4799999986 566665 4588999999
Q ss_pred EEeccCCccccccCccCCCCCCCCccCceeeCCCCCcccccccCcccCCCceEeccCCCCCCcccchhhhcCCCCCCCcE
Q 044195 668 HLRNSNVHSLEEMPKGFGKLTCLTTLCRFVVGKDSGSALRELKSLTNLQGTLEISSLENVKCVGDAIEAQLNRKVNLEAL 747 (1024)
Q Consensus 668 ~L~l~~~~~l~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L 747 (1024)
.+++.+|. +..+|.......+|+.+..- . + +. .+ -...+.++++|+.+
T Consensus 184 ~l~l~~n~-l~~I~~~aF~~~~L~~l~lp---~----------~---l~-~I--------------~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 184 KADLSKTK-ITKLPASTFVYAGIEEVLLP---V----------T---LK-EI--------------GSQAFLKTSQLKTI 231 (401)
T ss_dssp EEECTTSC-CSEECTTTTTTCCCSEEECC---T----------T---CC-EE--------------CTTTTTTCTTCCCE
T ss_pred eeecCCCc-ceEechhhEeecccCEEEeC---C----------c---hh-ee--------------hhhHhhCCCCCCEE
Confidence 99999887 88887765445566555210 0 0 00 00 01124555666666
Q ss_pred EEEecCCCCccccccccccchhhHHHHhhccCCCCCccEEEEEecCCCCCCcccCCCCCCCceEEEEecCCCC----CCC
Q 044195 748 VLRWCNRSCISNIRNEDAVDLETQTRVLDMLKPHQKLEELTITGYGGTKFPIWLGDFPFSKLVSLKFEYCGMC----TSL 823 (1024)
Q Consensus 748 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~----~~l 823 (1024)
.+..+ ...++ ...+.. .+|+.+.+. +....++..... .+++|+.+.+.++... ..+
T Consensus 232 ~l~~~-l~~I~----------------~~aF~~-~~L~~i~lp-~~i~~I~~~aF~-~c~~L~~l~l~~~~~~~~~~~~I 291 (401)
T 4fdw_A 232 EIPEN-VSTIG----------------QEAFRE-SGITTVKLP-NGVTNIASRAFY-YCPELAEVTTYGSTFNDDPEAMI 291 (401)
T ss_dssp ECCTT-CCEEC----------------TTTTTT-CCCSEEEEE-TTCCEECTTTTT-TCTTCCEEEEESSCCCCCTTCEE
T ss_pred ecCCC-ccCcc----------------cccccc-CCccEEEeC-CCccEEChhHhh-CCCCCCEEEeCCccccCCcccEE
Confidence 66432 11111 122333 467777773 334444433322 3678888888776432 123
Q ss_pred C--CCCCCCCCceeeecCCCCceEeccccccCCCCCCCCCcceeeccccccccccccccccccccccCcccceeeeccCc
Q 044195 824 P--SVGQLPVLKHLEMRGMDRVKSVGLEFYGNSCSAPFPSLETLCFVNMQEWEEWIPRGFAQEVNEVFPKLRKLSLLRCS 901 (1024)
Q Consensus 824 ~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 901 (1024)
+ .+..+++|+.+.+.+ .++.++...+. .+++|+.+.+.. ++..+....+.+ + +|+.|.+.++
T Consensus 292 ~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~-----~c~~L~~l~lp~--~l~~I~~~aF~~-----~-~L~~l~l~~n- 355 (401)
T 4fdw_A 292 HPYCLEGCPKLARFEIPE--SIRILGQGLLG-----GNRKVTQLTIPA--NVTQINFSAFNN-----T-GIKEVKVEGT- 355 (401)
T ss_dssp CTTTTTTCTTCCEECCCT--TCCEECTTTTT-----TCCSCCEEEECT--TCCEECTTSSSS-----S-CCCEEEECCS-
T ss_pred CHHHhhCCccCCeEEeCC--ceEEEhhhhhc-----CCCCccEEEECc--cccEEcHHhCCC-----C-CCCEEEEcCC-
Confidence 3 567788888888873 46666554332 277888888754 344443333322 6 8899998887
Q ss_pred CCcccCC----CCC-CCccEEEEecc
Q 044195 902 KLQGTLP----ERL-LLLEKLVIQSC 922 (1024)
Q Consensus 902 ~L~~~lp----~~l-~~L~~L~l~~c 922 (1024)
.+. .++ ..+ .+++.|.+-..
T Consensus 356 ~~~-~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 356 TPP-QVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp SCC-BCCCSSCCCSCTTCCEEEECGG
T ss_pred CCc-ccccccccCCCCCccEEEeCHH
Confidence 433 233 233 36777877553
No 177
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.22 E-value=2.5e-05 Score=82.11 Aligned_cols=195 Identities=12% Similarity=0.073 Sum_probs=101.4
Q ss_pred ccccchhhHHHHHH-------HHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHH
Q 044195 182 KVYGREKDKEAIVE-------LLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFR 254 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (1024)
.++|.+..++++.. .+... .....+.+.|+|++|+|||++|+++++. .... .+.+..+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~---~~~i~~~~~----- 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFP---FIKICSPDK----- 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCS---EEEEECGGG-----
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEeCHHH-----
Confidence 46777766665555 33322 1345678999999999999999999972 2211 222332221
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCC----------CHHHHHHhhcCCCC---CCCCcEEE
Q 044195 255 VTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNE----------NYEYWSIFSRPFGA---GAPGSKIV 321 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~----------~~~~~~~l~~~~~~---~~~gs~il 321 (1024)
+.+. ........+...+......++.+|+||+++.- .......+...+.. ......||
T Consensus 101 --------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 101 --------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp --------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred --------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 1100 00001122223333344567889999998431 11122333332221 22334566
Q ss_pred EEcCCchhhhc---cCC-ccceecCCCCh-HhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCC------ChHHHHHH
Q 044195 322 VTTRNLRVTVN---MGA-DQAYQLKELSN-DDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKG------LPLAAKTL 390 (1024)
Q Consensus 322 vTtR~~~~~~~---~~~-~~~~~l~~L~~-~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g------~PLai~~~ 390 (1024)
.||........ ... ...+.+++++. ++...++.... ... .+....|++.+.| .+-++..+
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~------~~~---~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG------NFK---DKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT------CSC---HHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC------CCC---HHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 67776543222 111 35688999988 66666665531 111 2556778888887 34444444
Q ss_pred HhhhcCCCChhHHHHHHh
Q 044195 391 GGLLRGKHDPRDWEFVLN 408 (1024)
Q Consensus 391 ~~~l~~~~~~~~w~~~l~ 408 (1024)
-.... ......+..+++
T Consensus 243 ~~a~~-~~~~~~~~~~~~ 259 (272)
T 1d2n_A 243 EMSLQ-MDPEYRVRKFLA 259 (272)
T ss_dssp HHHTT-SCGGGHHHHHHH
T ss_pred HHHhh-hchHHHHHHHHH
Confidence 33322 223345555543
No 178
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.21 E-value=2.5e-05 Score=81.68 Aligned_cols=187 Identities=12% Similarity=0.016 Sum_probs=98.7
Q ss_pred CccccchhhHHHHHHHHHhCCCC------CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLR------ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFR 254 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (1024)
.+++|.+..++.+.+++...... +....+.|.|+|++|+|||++|+++++ .... ..+.++++.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~--~~~~---~~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQV---PFLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH--HHTC---CEEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH--HhCC---CEEEechHHHHhh--
Confidence 35889988887776654321100 112345688999999999999999997 3322 2334444332110
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCC---------------HHHHHHhhcCCCC--CCCC
Q 044195 255 VTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNEN---------------YEYWSIFSRPFGA--GAPG 317 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~---------------~~~~~~l~~~~~~--~~~g 317 (1024)
........+...+.......+.+|+||+++.-. ......+...+.. ...+
T Consensus 79 -------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 79 -------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp -------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred -------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 001111222233333334568899999995420 0111222221111 1234
Q ss_pred cEEEEEcCCchhh-hcc-C---CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChH-HHHHH
Q 044195 318 SKIVVTTRNLRVT-VNM-G---ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPL-AAKTL 390 (1024)
Q Consensus 318 s~ilvTtR~~~~~-~~~-~---~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 390 (1024)
..||.||...... ... . -...+.++..+.++..+++...+.... ...........+++.+.|.+- .|..+
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~---~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK---LTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT---CCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC---CCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 5666677654321 111 1 124677889999999999887653221 111222334678888888754 44443
No 179
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.21 E-value=3.4e-06 Score=92.91 Aligned_cols=197 Identities=11% Similarity=0.099 Sum_probs=103.3
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcCh---hhhc-cCCc----------------
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDD---RVQR-RFQI---------------- 240 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~---~~~~-~f~~---------------- 240 (1024)
.+++|.+..++.+.+++... +....+.|+|++|+||||+|+.++... .... .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~-----~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQP-----RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCT-----TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred HHhcCCHHHHHHHHHHHhhC-----CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 35899998888887776221 122238999999999999999987621 0000 0000
Q ss_pred ----eEEEEecCCC-CHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCC
Q 044195 241 ----KAWTFVSEDF-NVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGA 315 (1024)
Q Consensus 241 ----~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~ 315 (1024)
.+.+..+... ......++++..+.....-.... .+. .+.+++-++|+|++..-+....+.+...+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQD-----SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhccccccc-----ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 1111111000 00001222222221110000000 000 023367799999997755555555554443333
Q ss_pred CCcEEEEEcCCch-hhhcc-CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044195 316 PGSKIVVTTRNLR-VTVNM-GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTLG 391 (1024)
Q Consensus 316 ~gs~ilvTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 391 (1024)
.+..+|++|.... +...+ .....+++++++.++..+++...+...+- ..+ .++.+..|++.++|.+-.+..+.
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~--~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-QLE--TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-EEC--CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-CCC--cHHHHHHHHHHcCCCHHHHHHHH
Confidence 4677777776532 22111 23367999999999999999876532111 111 02566789999999987554443
No 180
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.21 E-value=1.1e-06 Score=95.99 Aligned_cols=14 Identities=7% Similarity=-0.014 Sum_probs=10.1
Q ss_pred CCCCCCCceeeecC
Q 044195 826 VGQLPVLKHLEMRG 839 (1024)
Q Consensus 826 l~~l~~L~~L~L~~ 839 (1024)
+..+|+|+.|.+.+
T Consensus 135 ~~~l~~L~~L~l~~ 148 (362)
T 2ra8_A 135 KEKFAHFEGLFWGD 148 (362)
T ss_dssp HHHHTTCSEEEECC
T ss_pred hhhcchhhheeecC
Confidence 44578888888854
No 181
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.20 E-value=4.2e-06 Score=89.00 Aligned_cols=185 Identities=15% Similarity=0.083 Sum_probs=100.8
Q ss_pred CccccchhhHHHHHHHHHhCCCC-------CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLR-------ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (1024)
.+++|.+..++++.+++...... +-...+.+.|+|++|+|||++|+++++ ..... .+.+..+.-.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~--~~~~~---~~~v~~~~~~--- 88 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT--ETNAT---FIRVVGSELV--- 88 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH--HTTCE---EEEEEGGGGC---
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCC---EEEEehHHHH---
Confidence 45899999999998877542000 012345689999999999999999987 33222 2223322110
Q ss_pred HHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCC-----------CH---HHHHHhhcCCC--CCCCC
Q 044195 254 RVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNE-----------NY---EYWSIFSRPFG--AGAPG 317 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~-----------~~---~~~~~l~~~~~--~~~~g 317 (1024)
... .......+...+......++.+|+||+++.- .. ..+..+...+. ....+
T Consensus 89 -----------~~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 156 (285)
T 3h4m_A 89 -----------KKF-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGD 156 (285)
T ss_dssp -----------CCS-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSS
T ss_pred -----------Hhc-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 000 0111122222333333556789999999431 11 11222221111 12245
Q ss_pred cEEEEEcCCchhhh-cc----CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCC-ChHHHHHH
Q 044195 318 SKIVVTTRNLRVTV-NM----GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKG-LPLAAKTL 390 (1024)
Q Consensus 318 s~ilvTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~ 390 (1024)
..||.||....... .. .-...+.+++.+.++..+++...+..... ..... ...|++.+.| .|-.+..+
T Consensus 157 ~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 157 VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp EEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHHH
T ss_pred EEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHHH
Confidence 67788887543221 11 11246889999999999999887543221 12222 3457777777 45444443
No 182
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=8.3e-06 Score=94.13 Aligned_cols=197 Identities=15% Similarity=0.157 Sum_probs=107.3
Q ss_pred CccccchhhHHHHHHHHHhCC-----------CCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCC
Q 044195 181 AKVYGREKDKEAIVELLLRDG-----------LRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSED 249 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 249 (1024)
.+++|++..++++.+|+.... ..+.+..+.+.|+|++|+|||++|+++++. .. + .++.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l~--~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--LG--Y-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--TT--C-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--cC--C-CEEEEeCCCc
Confidence 459999999999999997511 001123478999999999999999999973 21 1 2344555544
Q ss_pred CCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCC---HHHHHHhhcCCCCCCCCcEEEEEcCC
Q 044195 250 FNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNEN---YEYWSIFSRPFGAGAPGSKIVVTTRN 326 (1024)
Q Consensus 250 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~---~~~~~~l~~~~~~~~~gs~ilvTtR~ 326 (1024)
.... .+...+...........-...... .....+++.+||||+++.-. ...+..+...+.. .+..||+++..
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~ 188 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNE 188 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESC
T ss_pred chHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcC
Confidence 4432 223322222111100000000000 00123578899999995432 1122333322222 22345555543
Q ss_pred ch---hhhccCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCCh-HHHHHHH
Q 044195 327 LR---VTVNMGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLP-LAAKTLG 391 (1024)
Q Consensus 327 ~~---~~~~~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~ 391 (1024)
.. +.........+.+++++.++..+++...+....- ...+ +....|++.++|.+ -|+..+.
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~-~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF-KLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCC-CCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 22 2222223457899999999999988776532211 1222 45677899999954 4555543
No 183
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.11 E-value=2.1e-05 Score=84.69 Aligned_cols=159 Identities=15% Similarity=0.111 Sum_probs=89.2
Q ss_pred ccccchhhHHHHHHHHHhCC---------CCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCH
Q 044195 182 KVYGREKDKEAIVELLLRDG---------LRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNV 252 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 252 (1024)
.++|.+..++.+.+++.... .........+.|+|++|+|||++|+.+++...........-++.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 37888888887776654210 001234567999999999999999998873221111111123333210
Q ss_pred HHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCC---------CHHHHHHhhcCCCCCCCCcEEEEE
Q 044195 253 FRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNE---------NYEYWSIFSRPFGAGAPGSKIVVT 323 (1024)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~---------~~~~~~~l~~~~~~~~~gs~ilvT 323 (1024)
.+.... ...........+... +..+|+||+++.- .......+...+.....+..||.|
T Consensus 109 ---------~l~~~~-~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQY-IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSS-TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhc-ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 111110 011112222222222 4569999999632 444455555555444456678888
Q ss_pred cCCch----------hhhccCCccceecCCCChHhHHHHHHhhhc
Q 044195 324 TRNLR----------VTVNMGADQAYQLKELSNDDCLCLLTQISL 358 (1024)
Q Consensus 324 tR~~~----------~~~~~~~~~~~~l~~L~~~ea~~lf~~~a~ 358 (1024)
|.... +...+ ...+.+++++.++..+++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHH
Confidence 76432 11121 25789999999999999877653
No 184
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.10 E-value=3.1e-06 Score=79.35 Aligned_cols=114 Identities=14% Similarity=-0.011 Sum_probs=69.0
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
+++|++..+.++.+.+.... ....-|.|+|++|+|||++|+.+++... +... ..+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~-~~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----ETDIAVWLYGAPGTGRMTGARYLHQFGR-NAQG-EFV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----TCCSCEEEESSTTSSHHHHHHHHHHSST-TTTS-CCE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHHHhCC-ccCC-CEE-EECCCCCcc---------
Confidence 48899999999988886542 1223578999999999999999987321 1111 223 665543221
Q ss_pred hccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCC
Q 044195 262 SITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRN 326 (1024)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~ 326 (1024)
.... ..+.. .+.-.|+||+++.-.......+...+.......+||.||..
T Consensus 66 ---------~~~~---~~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQLN---DFIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SCHH---HHHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hhhh---cHHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 0111 11111 13457999999776665555555554433445678887764
No 185
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.10 E-value=1.1e-05 Score=87.63 Aligned_cols=176 Identities=16% Similarity=0.150 Sum_probs=100.4
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (1024)
.+++|.+..++.+.+++... ....++.+.|++|+|||++|+++++ ... ...+.++.+.. . ...++..+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~-----~~~~~~L~~G~~G~GKT~la~~la~--~l~---~~~~~i~~~~~-~-~~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG-----KIPHIILHSPSPGTGKTTVAKALCH--DVN---ADMMFVNGSDC-K-IDFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT-----CCCSEEEECSSTTSSHHHHHHHHHH--HTT---EEEEEEETTTC-C-HHHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcC-----CCCeEEEeeCcCCCCHHHHHHHHHH--HhC---CCEEEEccccc-C-HHHHHHHH
Confidence 45899999999999999743 2335788889999999999999987 332 12344443331 1 12222211
Q ss_pred HhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCC-HHHHHHhhcCCCCCCCCcEEEEEcCCchh-hhcc-CCcc
Q 044195 261 KSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNEN-YEYWSIFSRPFGAGAPGSKIVVTTRNLRV-TVNM-GADQ 337 (1024)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~-~~~~~~l~~~~~~~~~gs~ilvTtR~~~~-~~~~-~~~~ 337 (1024)
....... ...+++.++||||++.-. ....+.+...+.....+.++|+||....- ...+ ....
T Consensus 94 ~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 94 TNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred HHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 1111000 012367899999997655 44555554444333345678888876431 1111 1224
Q ss_pred ceecCCCChHhHHHHH-------HhhhcCCCCCCCCccHHHHHHHHHHHcCCChHH
Q 044195 338 AYQLKELSNDDCLCLL-------TQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLA 386 (1024)
Q Consensus 338 ~~~l~~L~~~ea~~lf-------~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 386 (1024)
.+.+++++.++..+++ ...+.... ....+ .+....|++.++|.+-.
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~-~~~~~--~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEG-IAIAD--MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHT-CCBSC--HHHHHHHHHHTCSCTTH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC-CCCCc--HHHHHHHHHhCCCCHHH
Confidence 7899999988743332 22221111 11111 25567788888887653
No 186
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.01 E-value=9.6e-07 Score=97.32 Aligned_cols=83 Identities=16% Similarity=0.133 Sum_probs=50.1
Q ss_pred CCCceEEEEeCCCCCccc--CCccccCCCCCcEeeccCCCcccc-----Cccc-ccCCCCcEEecCCCcccc-----ccc
Q 044195 591 DLPRLRVFSLCGYCNIID--LPNEIGNLKHLRFLNLSRTNIQIL-----PQSI-NSLYNLHTVLLEDCRRLK-----KLC 657 (1024)
Q Consensus 591 ~l~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~L~~~~i~~l-----p~~i-~~L~~L~~L~l~~~~~l~-----~lp 657 (1024)
..++|++|+|++| .+.. +......+.+|++|+|++|.++.. ...+ ...++|++|++++| .+. .++
T Consensus 99 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~ 176 (372)
T 3un9_A 99 GRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLM 176 (372)
T ss_dssp CSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHH
T ss_pred CCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHH
Confidence 3467888888877 4543 112223455777888888777532 1112 23567778888777 343 244
Q ss_pred cccCCCCcccEEeccCCc
Q 044195 658 KDMGNLTKLHHLRNSNVH 675 (1024)
Q Consensus 658 ~~i~~L~~L~~L~l~~~~ 675 (1024)
..+..+++|++|++++|.
T Consensus 177 ~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HHHHTCSSCCEEECTTSS
T ss_pred HHHhcCCCcCEEeCCCCC
Confidence 445667777788777776
No 187
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.99 E-value=0.00027 Score=75.88 Aligned_cols=189 Identities=14% Similarity=0.071 Sum_probs=100.9
Q ss_pred CccccchhhHHHHHHHHHhC----C--CCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHH
Q 044195 181 AKVYGREKDKEAIVELLLRD----G--LRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFR 254 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (1024)
.+++|.+..++.|.+.+..+ . .......+.|.|+|++|+|||+||+++++... .. ..+.++.+.-.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~---- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLV---- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHH----
Confidence 35889998888888776421 0 00112346899999999999999999997310 11 12233333211
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCC-----------HHHHHHhhcC---CCCCCCCcEE
Q 044195 255 VTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNEN-----------YEYWSIFSRP---FGAGAPGSKI 320 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~-----------~~~~~~l~~~---~~~~~~gs~i 320 (1024)
... .......+...+...-..++.+|+||+++.-. ......+... +.....+..|
T Consensus 84 ----------~~~-~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 84 ----------SKW-LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp ----------CSS-CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred ----------hhh-hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 000 11112222222223334678899999995320 0111222211 1112244556
Q ss_pred EEEcCCchh-hhcc--CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCC-hHHHHHHHh
Q 044195 321 VVTTRNLRV-TVNM--GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGL-PLAAKTLGG 392 (1024)
Q Consensus 321 lvTtR~~~~-~~~~--~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~~~ 392 (1024)
|.||..... ...+ .-...+.++..+.++..+++..+...... .. .......|++.+.|. +-.|..+..
T Consensus 153 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l---~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN-SL---TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB-CC---CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC-CC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 656654321 1111 12246778888888888998876532211 11 124567789999887 544655543
No 188
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=3.3e-05 Score=84.16 Aligned_cols=175 Identities=12% Similarity=0.150 Sum_probs=102.2
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCC-ceEEEEecCCCCHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQ-IKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il 260 (1024)
+++|.+..++.+..++... ....+.++|++|+||||+|+.++.... ...+. .+..++.+.....
T Consensus 26 ~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~-------- 90 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGI-------- 90 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSH--------
T ss_pred HhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccH--------
Confidence 4789888888888888643 233489999999999999999987311 11111 1122222221121
Q ss_pred HhccCCCCCCCcHHHHHHHHHHHh------CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCch-hhhc-
Q 044195 261 KSITNDQSKDDDLNWVQEKLKKQL------SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLR-VTVN- 332 (1024)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~l~~~l------~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~-~~~~- 332 (1024)
+.+...+.... .+.+-++|+|+++.-.....+.+...+.......++|++|.... +...
T Consensus 91 -------------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i 157 (340)
T 1sxj_C 91 -------------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPAL 157 (340)
T ss_dssp -------------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred -------------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhH
Confidence 22222222211 23467899999966555555555444433334567777765432 1111
Q ss_pred cCCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 044195 333 MGADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAK 388 (1024)
Q Consensus 333 ~~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 388 (1024)
......+.+.+++.++..+.+...+.... ... .++..+.|++.++|.+--+.
T Consensus 158 ~sR~~~~~~~~l~~~~~~~~l~~~~~~~~-~~i---~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 158 LSQCTRFRFQPLPQEAIERRIANVLVHEK-LKL---SPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHTTT-CCB---CHHHHHHHHHHHTTCHHHHH
T ss_pred HhhceeEeccCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHH
Confidence 12234788999999999888876542211 111 13566789999999887443
No 189
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.98 E-value=4e-05 Score=82.94 Aligned_cols=168 Identities=17% Similarity=0.150 Sum_probs=91.7
Q ss_pred HHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCC
Q 044195 190 KEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSK 269 (1024)
Q Consensus 190 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~ 269 (1024)
...+..+...+. .....+.|+|++|+||||||+.+++. ....-..++++++. .+...+...+...
T Consensus 23 ~~~~~~~~~~~~----~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~~------~~~~~~~~~~~~~--- 87 (324)
T 1l8q_A 23 YEVVKEALENLG----SLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSAD------DFAQAMVEHLKKG--- 87 (324)
T ss_dssp HHHHHHHHHTTT----TSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHH------HHHHHHHHHHHHT---
T ss_pred HHHHHHHHhCcC----CCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEHH------HHHHHHHHHHHcC---
Confidence 344555554321 23467899999999999999999983 32222234555432 2333333333211
Q ss_pred CCcHHHHHHHHHHHhCCCceeEEeeccCCCCH--HHHHHhhcCCCC-CCCCcEEEEEcCCchh---------hhccCCcc
Q 044195 270 DDDLNWVQEKLKKQLSGKKFLLVLDDVWNENY--EYWSIFSRPFGA-GAPGSKIVVTTRNLRV---------TVNMGADQ 337 (1024)
Q Consensus 270 ~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~--~~~~~l~~~~~~-~~~gs~ilvTtR~~~~---------~~~~~~~~ 337 (1024)
... .+...+. ++.+|+|||+..-.. ...+.+...+.. ...|..||+||..... ...+....
T Consensus 88 --~~~----~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~ 160 (324)
T 1l8q_A 88 --TIN----EFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGI 160 (324)
T ss_dssp --CHH----HHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSE
T ss_pred --cHH----HHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCce
Confidence 111 1222222 367999999955321 222223222211 1245678888764321 11222335
Q ss_pred ceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChH
Q 044195 338 AYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPL 385 (1024)
Q Consensus 338 ~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 385 (1024)
.+.+++ +.++..+++...+....- ..+ .+....|++.+ |..-
T Consensus 161 ~i~l~~-~~~e~~~il~~~~~~~~~-~l~---~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 161 LVEIEL-DNKTRFKIIKEKLKEFNL-ELR---KEVIDYLLENT-KNVR 202 (324)
T ss_dssp EEECCC-CHHHHHHHHHHHHHHTTC-CCC---HHHHHHHHHHC-SSHH
T ss_pred EEEeCC-CHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHhC-CCHH
Confidence 689999 999999999887642211 122 35667788888 7764
No 190
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.98 E-value=8.9e-05 Score=81.13 Aligned_cols=188 Identities=11% Similarity=0.005 Sum_probs=101.9
Q ss_pred CccccchhhHHHHHHHHHhC----CC--CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHH
Q 044195 181 AKVYGREKDKEAIVELLLRD----GL--RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFR 254 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (1024)
.+++|.+..++.+.+.+... .. ......+.|.|+|++|+|||++|+++++ .... ..+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~---~~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS--QSGA---TFFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH--HTTC---EEEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH--HcCC---eEEEEehHHhhc---
Confidence 45899999999998877531 00 0012356799999999999999999987 3222 223444432111
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHH-HHHHHhCCCceeEEeeccCCC-----------CHHHHHHhhcCCC----CCCCCc
Q 044195 255 VTKSILKSITNDQSKDDDLNWVQE-KLKKQLSGKKFLLVLDDVWNE-----------NYEYWSIFSRPFG----AGAPGS 318 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~LlVlDd~~~~-----------~~~~~~~l~~~~~----~~~~gs 318 (1024)
. .......... .+...-..++.+|+||+++.- .......+...+. ....+.
T Consensus 156 -----------~--~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------K--WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------S--STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------c--ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 0 0011111122 222223457889999999321 0011222222211 112344
Q ss_pred EEEEEcCCch-hhhcc--CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCC-ChHHHHHHHhh
Q 044195 319 KIVVTTRNLR-VTVNM--GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKG-LPLAAKTLGGL 393 (1024)
Q Consensus 319 ~ilvTtR~~~-~~~~~--~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~~~ 393 (1024)
.||.||.... +...+ .-...+.+...+.++..+++...+..... .. .......|++.+.| .+-.|..+...
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~l---~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-CL---SEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-CC---CHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-Cc---cHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5665665432 21111 12235778888888888888776532211 11 13566778899988 56666665543
No 191
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.98 E-value=6.4e-06 Score=81.16 Aligned_cols=43 Identities=26% Similarity=0.312 Sum_probs=37.1
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.++||+.+++.+.+.+... ..+.+.|+|++|+|||++|+.+++
T Consensus 23 ~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 23 PVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHH
Confidence 5899999999999998542 345678999999999999999987
No 192
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.97 E-value=0.0001 Score=79.50 Aligned_cols=187 Identities=14% Similarity=0.037 Sum_probs=102.7
Q ss_pred CccccchhhHHHHHHHHHhCC------CCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDG------LRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFR 254 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (1024)
.+++|.+..++.|.+++.... .......+.|.|+|++|+|||+||+++++ .....| +.++.+ +
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~~---~~v~~~------~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSSS------D 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCEE---EEEEHH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCCE---EEEchH------H
Confidence 458999999999988773210 00122346799999999999999999997 333222 233221 1
Q ss_pred HHHHHHHhccCCCCCCCcHHHHH-HHHHHHhCCCceeEEeeccCCCC-----------HHHHHHhhcC---CCCCCCCcE
Q 044195 255 VTKSILKSITNDQSKDDDLNWVQ-EKLKKQLSGKKFLLVLDDVWNEN-----------YEYWSIFSRP---FGAGAPGSK 319 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDd~~~~~-----------~~~~~~l~~~---~~~~~~gs~ 319 (1024)
+ ..... ...+... ..+...-..++.+|+||++..-. ......+... +.....+..
T Consensus 87 l----~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 87 L----VSKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp H----HTTTG------GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred H----hhccc------chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceE
Confidence 1 11110 1112222 22223334577899999995321 0112222221 212234556
Q ss_pred EEEEcCCchhh-hcc--CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCC-ChHHHHHHHh
Q 044195 320 IVVTTRNLRVT-VNM--GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKG-LPLAAKTLGG 392 (1024)
Q Consensus 320 ilvTtR~~~~~-~~~--~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~~ 392 (1024)
||.||...... ..+ .-...+.+...+.++..+++..++..... .. .......|++.+.| .+-.|..+..
T Consensus 157 vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~---~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC-VL---TKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC-CC---CHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC-CC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66677653221 111 12245778888999999999887643221 11 12455678888887 4555555543
No 193
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.96 E-value=2.2e-06 Score=94.36 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=24.9
Q ss_pred CCceEEEEeCCCCCccc-----CCccccCCCCCcEeeccCCCccc-----cCcccccCCCCcEEecCCC
Q 044195 592 LPRLRVFSLCGYCNIID-----LPNEIGNLKHLRFLNLSRTNIQI-----LPQSINSLYNLHTVLLEDC 650 (1024)
Q Consensus 592 l~~L~~L~L~~~~~l~~-----lp~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~~ 650 (1024)
.++|++|+|++| .++. ++..+..+++|++|+|++|.+.. ++..+...++|++|++++|
T Consensus 154 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 154 QCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp TCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred CCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 344445555444 3322 22333444445555555444431 2333344444455555444
No 194
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.95 E-value=0.00015 Score=79.05 Aligned_cols=187 Identities=15% Similarity=0.063 Sum_probs=99.7
Q ss_pred CccccchhhHHHHHHHHHhC----C--CCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHH
Q 044195 181 AKVYGREKDKEAIVELLLRD----G--LRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFR 254 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (1024)
.+++|.+..++.|.+.+... . .......+.|.|+|++|+|||+||+++++ .....| +.++.+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH--HHTCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EEeeHH------H
Confidence 35899999999888876421 0 00112335688999999999999999998 332222 223221 1
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCH-----------HHHHHhhcCC---CCCCCCcEE
Q 044195 255 VTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENY-----------EYWSIFSRPF---GAGAPGSKI 320 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~-----------~~~~~l~~~~---~~~~~gs~i 320 (1024)
+ ..... ......+...+...-..++.+|+||+++.-.. .....+...+ .....+..|
T Consensus 120 l----~~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 120 L----VSKWM-----GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp H----HSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred H----hhhhc-----chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 1 11111 11111222222223346789999999954211 0122222211 112245566
Q ss_pred EEEcCCchh-hhcc--CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCC-ChHHHHHHH
Q 044195 321 VVTTRNLRV-TVNM--GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKG-LPLAAKTLG 391 (1024)
Q Consensus 321 lvTtR~~~~-~~~~--~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~ 391 (1024)
|.||..... ...+ .-...+.+...+.++..+++..++..... .. .......|++.+.| .+-.|..+.
T Consensus 191 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~~---~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS-VL---TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB-CC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC-CC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 666665421 1111 12246778888889989999876533211 11 12455778889988 454555544
No 195
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.89 E-value=3e-05 Score=88.14 Aligned_cols=145 Identities=18% Similarity=0.193 Sum_probs=80.1
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccC------C-ceEEEEecCCCCHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF------Q-IKAWTFVSEDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f------~-~~~wv~~~~~~~~~ 253 (1024)
..+|||+.+++++...|.... ..-+.|+|++|+|||++|+.++. ++...+ + ..+.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEEeeCC------
Confidence 359999999999999996532 23568999999999999999987 332211 1 12222222
Q ss_pred HHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchhhh--
Q 044195 254 RVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRVTV-- 331 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~-- 331 (1024)
....+. ..... ...+...-..++.+|++|. .......+...+..+ ..++|.+|.......
T Consensus 246 -------~~~~g~--~e~~~---~~~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~g--~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 246 -------TKYRGE--FEDRL---KKVMDEIRQAGNIILFIDA----AIDASNILKPSLARG--ELQCIGATTLDEYRKYI 307 (468)
T ss_dssp ----------------CTTH---HHHHHHHHTCCCCEEEECC------------CCCTTSS--SCEEEEECCTTTTHHHH
T ss_pred -------ccccch--HHHHH---HHHHHHHHhcCCeEEEEeC----chhHHHHHHHhhcCC--CEEEEecCCHHHHHHHh
Confidence 000000 01112 2222223345788999991 122333444444322 346666665543111
Q ss_pred -----ccCCccceecCCCChHhHHHHHHhhh
Q 044195 332 -----NMGADQAYQLKELSNDDCLCLLTQIS 357 (1024)
Q Consensus 332 -----~~~~~~~~~l~~L~~~ea~~lf~~~a 357 (1024)
......++.+.+.+.++..+++...+
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11133468999999999999998754
No 196
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.89 E-value=3.1e-06 Score=92.29 Aligned_cols=58 Identities=14% Similarity=0.008 Sum_probs=30.6
Q ss_pred CCCCCcCEEEEccCCCcccc-----CC--CCCCCccEEEEcCCCCcccchhhhcCC-CCCCCEEeeecCC
Q 044195 930 QCLPALSELQIRGCRRVVFS-----SP--IDFSSLKSVFLGDIANQVVLAALFEQG-LPQLESLKIDSVR 991 (1024)
Q Consensus 930 ~~l~~L~~L~l~~~~~l~~~-----~~--~~l~~L~~L~l~~c~~l~~l~~~~l~~-l~~L~~L~l~~c~ 991 (1024)
+.+|+|++|+|+.|. ++.. .. ..+++|+.|++++|. ++......+.. + ...+++++.+
T Consensus 276 ~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 276 DILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCc-CCHHHHHHHHHHc--CCEEEecCCc
Confidence 356777777777665 4321 11 346778888887663 43322222221 1 3456666553
No 197
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.87 E-value=1.9e-05 Score=77.11 Aligned_cols=121 Identities=16% Similarity=0.120 Sum_probs=63.9
Q ss_pred chhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccC
Q 044195 186 REKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITN 265 (1024)
Q Consensus 186 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 265 (1024)
....++.+.+++.+-. ......+.|+|++|+||||||+.+++.......+ .+++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 3445556666664432 1234689999999999999999999832212222 233443 33444444333322
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHH--HHhhcCCCCC-CCCcEEEEEcCC
Q 044195 266 DQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYW--SIFSRPFGAG-APGSKIVVTTRN 326 (1024)
Q Consensus 266 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~--~~l~~~~~~~-~~gs~ilvTtR~ 326 (1024)
.... ..... +. ++-+|||||++......| +.+...+... ..|..||+||..
T Consensus 89 ~~~~-----~~~~~----~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKDT-----KFLKT----VL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCCS-----HHHHH----HH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chHH-----HHHHH----hc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 2111 11111 12 567999999974222222 2222222111 246788888874
No 198
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.84 E-value=5.5e-05 Score=80.18 Aligned_cols=149 Identities=9% Similarity=0.008 Sum_probs=91.1
Q ss_pred cchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChh-hhccCCceEEEEecC-CCCHHHHHHHHHHh
Q 044195 185 GREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDR-VQRRFQIKAWTFVSE-DFNVFRVTKSILKS 262 (1024)
Q Consensus 185 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~-~~~~f~~~~wv~~~~-~~~~~~~~~~il~~ 262 (1024)
|-++.++.+.+.+... ...+..++|++|+||||+|+.+++... .........+++.+. ...+.. .+++.+.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 3355667777777543 257899999999999999999986210 111122334444332 222222 2223333
Q ss_pred ccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCc-hhhhccCCccceec
Q 044195 263 ITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNL-RVTVNMGADQAYQL 341 (1024)
Q Consensus 263 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~~~~~~~~~~~~~l 341 (1024)
+...+ ..+++-++|+|+++.-+....+.+...+....+.+.+|++|.++ .+...+... .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 22111 12456799999997777667777776666555667777776543 333333333 8999
Q ss_pred CCCChHhHHHHHHhhh
Q 044195 342 KELSNDDCLCLLTQIS 357 (1024)
Q Consensus 342 ~~L~~~ea~~lf~~~a 357 (1024)
+++++++..+.+...+
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999988764
No 199
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.84 E-value=0.00033 Score=78.92 Aligned_cols=188 Identities=13% Similarity=0.093 Sum_probs=100.7
Q ss_pred CccccchhhHHHHHHHHHhC----CC--CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHH
Q 044195 181 AKVYGREKDKEAIVELLLRD----GL--RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFR 254 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (1024)
.+++|.+..++.|.+.+..+ .. ......+.|.|+|++|+|||+||+++++. . ...-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~---- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD---- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH----
Confidence 45899999999888876321 00 00123468999999999999999999973 2 112233333221
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCC-----------CHHHHHHhhcCCCC---CCCCcEE
Q 044195 255 VTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNE-----------NYEYWSIFSRPFGA---GAPGSKI 320 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~-----------~~~~~~~l~~~~~~---~~~gs~i 320 (1024)
+. ....+. .......+ +...-..++.+|+||++..- .......+...+.. ...+..|
T Consensus 204 l~----~~~~g~--~~~~~~~~---f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 204 LV----SKWLGE--SEKLVKNL---FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp --------------CCCTHHHH---HHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred HH----hhhcch--HHHHHHHH---HHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 10 111111 11122222 22222457889999999542 01123334433332 2345667
Q ss_pred EEEcCCchhh-hc-cC-CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCC-hHHHHHHH
Q 044195 321 VVTTRNLRVT-VN-MG-ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGL-PLAAKTLG 391 (1024)
Q Consensus 321 lvTtR~~~~~-~~-~~-~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~~ 391 (1024)
|.||...... .. .. -...+.+...+.++...+|..++..... .. .......|++.+.|. +-.|..+.
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l---~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN-SL---TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE-EC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC-CC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 7677654221 11 11 2245677777888888888876532211 11 124556788899884 54555544
No 200
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.83 E-value=0.00026 Score=75.48 Aligned_cols=187 Identities=13% Similarity=0.071 Sum_probs=98.4
Q ss_pred CccccchhhHHHHHHHHHhCCC------CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGL------RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFR 254 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (1024)
.+++|.+..++.+.+++..... ......+.+.|+|++|+|||++|++++. ..... .+.++++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~--~~~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT--ECSAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH--HTTCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCC---eEEeeHHHHhh---
Confidence 3589999999998887743210 0012346889999999999999999987 22222 23344332110
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCC-----------HHHHHHhh---cCCCCC--CCCc
Q 044195 255 VTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNEN-----------YEYWSIFS---RPFGAG--APGS 318 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~-----------~~~~~~l~---~~~~~~--~~gs 318 (1024)
.. ...........+......++.+|+||++..-. ......+. ..++.. ..+.
T Consensus 93 -----------~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 93 -----------KY-VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp -----------SS-CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred -----------cc-cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 00 01111112222223334578899999994321 11111111 112211 1345
Q ss_pred EEEEEcCCchh-hhcc--CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChH-HHHHHH
Q 044195 319 KIVVTTRNLRV-TVNM--GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPL-AAKTLG 391 (1024)
Q Consensus 319 ~ilvTtR~~~~-~~~~--~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 391 (1024)
.||.||..... ...+ .-...+.+...+.++...++...+..... .. .......|++.+.|.+- ++..+.
T Consensus 161 ~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~---~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS-PL---DTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC-CS---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 56667765421 1111 11245667777778878887765432111 11 12456778889999875 554444
No 201
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.77 E-value=0.00034 Score=77.66 Aligned_cols=187 Identities=14% Similarity=0.097 Sum_probs=98.5
Q ss_pred CccccchhhHHHHHHHHHhCCC------CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGL------RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFR 254 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (1024)
.+++|.+..++.+.+++..... ......+.|.|+|++|+|||++|+++++ +.... .+.++++.-.. .
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~--~~~~~---~~~v~~~~l~~--~ 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA--ESNAT---FFNISAASLTS--K 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH--HTTCE---EEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH--hhcCc---EEEeeHHHhhc--c
Confidence 4699999999999887743110 0012346899999999999999999987 32222 23333322111 0
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCC-----------CHHHHHHhhcCC---CC-CCCCcE
Q 044195 255 VTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNE-----------NYEYWSIFSRPF---GA-GAPGSK 319 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~-----------~~~~~~~l~~~~---~~-~~~gs~ 319 (1024)
. .......+...+...-...+.+|+||+++.- .......+...+ .. ......
T Consensus 188 ~-------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 188 Y-------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp -----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred c-------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEE
Confidence 0 0001111222222222446689999999432 111111221111 11 123345
Q ss_pred EEEEcCCch-hhhc-cCCc-cceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChH-HHHHHH
Q 044195 320 IVVTTRNLR-VTVN-MGAD-QAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPL-AAKTLG 391 (1024)
Q Consensus 320 ilvTtR~~~-~~~~-~~~~-~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 391 (1024)
||.||.... +... .... ..+.+...+.++..+++...+..... . -..+....|++.+.|..- +|..+.
T Consensus 255 vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~---l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS-P---LTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC-C---SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 565665432 1111 1122 35778888999999998876533211 1 123456778889988544 555554
No 202
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.74 E-value=0.00036 Score=74.28 Aligned_cols=181 Identities=15% Similarity=0.086 Sum_probs=97.3
Q ss_pred CccccchhhHHHHHHHHHhCCC-------CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGL-------RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (1024)
.+++|.+..++++.+++..... .+-...+.|.|+|++|+|||+||+++++ ..... ++.+. ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~--~~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH--HTTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH--HhCCC-----EEEEE----hH
Confidence 3589999988888887753200 0012346789999999999999999997 33222 22222 22
Q ss_pred HHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCC--------------HHHHHHhhcCCC--CCCCC
Q 044195 254 RVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNEN--------------YEYWSIFSRPFG--AGAPG 317 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~--------------~~~~~~l~~~~~--~~~~g 317 (1024)
++.... .+.. .. .+...+.......+.+|+||++..-. ......+...+. ....+
T Consensus 84 ~l~~~~----~g~~--~~---~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELLTMW----FGES--EA---NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHHHH----HTTC--TT---HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHhhh----cCch--HH---HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 222222 1111 11 12233333345678999999994210 011222222211 11245
Q ss_pred cEEEEEcCCchhh-hc-cC---CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHH
Q 044195 318 SKIVVTTRNLRVT-VN-MG---ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLA 386 (1024)
Q Consensus 318 s~ilvTtR~~~~~-~~-~~---~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 386 (1024)
..||.||...... .. .. -...+.+...+.++..+++........ ......+ ..+++.+.|.|-+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~-~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP-VAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCSSCCH----HHHHHTCSSCCHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC-CCccchH----HHHHHHcCCCCHH
Confidence 6677777654321 11 11 224678888899988888877653221 1112222 3455667777643
No 203
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.74 E-value=1.7e-05 Score=73.98 Aligned_cols=110 Identities=10% Similarity=0.034 Sum_probs=62.5
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
.++|++..++++.+.+.... ....-|.|+|++|+|||++|+.+++... ..+.++++. ...- .
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----~~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~---~~~~---~-- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----KRTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVE---YLID---M-- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----TCSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTT---HHHH---C--
T ss_pred CceeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhh---CChH---h--
Confidence 48899999888888876532 1223478999999999999999987322 222232221 1100 0
Q ss_pred hccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCC-CCCcEEEEEcCC
Q 044195 262 SITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAG-APGSKIVVTTRN 326 (1024)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~-~~gs~ilvTtR~ 326 (1024)
...+.+. .+.-.|+||++..-.......+...+... ..+.+||.||..
T Consensus 67 ---------------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ---------------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ---------------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ---------------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 0111111 23457899999776555544444433322 245678887764
No 204
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.73 E-value=9.3e-05 Score=79.61 Aligned_cols=121 Identities=14% Similarity=0.203 Sum_probs=66.5
Q ss_pred ccccchhhHHHHHHHHHhCC---CCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDG---LRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKS 258 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (1024)
.++|.+..++.+...+.... .........+.|+|++|+|||++|+.++. .....-...+.++++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeecccccccc-cHHH
Confidence 37888888888888776531 10122346899999999999999999997 332222234566655433221 1111
Q ss_pred HHHhccCCCC--CCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCC
Q 044195 259 ILKSITNDQS--KDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPF 311 (1024)
Q Consensus 259 il~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~ 311 (1024)
++ +.... .......+...+. ....-+++||++..........+...+
T Consensus 95 l~---g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~l 143 (311)
T 4fcw_A 95 LI---GAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQML 143 (311)
T ss_dssp HH---CCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred hc---CCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHH
Confidence 11 11110 0010111222221 234569999999776655555554433
No 205
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.72 E-value=0.00064 Score=75.71 Aligned_cols=106 Identities=8% Similarity=0.049 Sum_probs=58.9
Q ss_pred ccCCC-CceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCC--CcccCC-ccccCCCCCcEeeccCCCccccC-
Q 044195 559 IRGVQ-QLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYC--NIIDLP-NEIGNLKHLRFLNLSRTNIQILP- 633 (1024)
Q Consensus 559 ~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~--~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp- 633 (1024)
|.+++ .|+++.+-+. +.......|.+|.+|+.+.+..+. .+..++ ..+.++.+|+.+.+..+ ++.++
T Consensus 59 F~~~~~~L~sI~iP~s-------vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT-------VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp TTTCCSCCCEEEECTT-------CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred ccCCCCcCEEEEECCC-------eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 34443 4666665432 112223456777778877776541 244444 44566677777766544 44443
Q ss_pred cccccCCCCcEEecCCCcccccccc-ccCCCCcccEEeccCC
Q 044195 634 QSINSLYNLHTVLLEDCRRLKKLCK-DMGNLTKLHHLRNSNV 674 (1024)
Q Consensus 634 ~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~ 674 (1024)
..+..+.+|+.+.+..+ +..++. .+..+.+|+.+.+.++
T Consensus 131 ~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 33566777777777542 333332 3556677777766543
No 206
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.72 E-value=3.1e-05 Score=95.32 Aligned_cols=152 Identities=12% Similarity=0.167 Sum_probs=79.8
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhcc-----C-C-ceEEEEecCCCCHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRR-----F-Q-IKAWTFVSEDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-----f-~-~~~wv~~~~~~~~~ 253 (1024)
..+|||++++.++...|.... ...+.|+|++|+|||++|+.+++. .... . . .+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~~l~~-- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQR--IVKGDVPEGLKGKRIVSLQMGSLLA-- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHH--HHHTCSCTTSTTCEEEEECC-------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH--HhcCCCchhhcCCeEEEeehHHhhc--
Confidence 358999999999999996532 245789999999999999999973 2111 1 1 233333321100
Q ss_pred HHHHHHHHhccCCCCCCCcHHH-HHHHHHHHhC-CCceeEEeeccCCCC--------HHHHHHhhcCCCCCCCCcEEEEE
Q 044195 254 RVTKSILKSITNDQSKDDDLNW-VQEKLKKQLS-GKKFLLVLDDVWNEN--------YEYWSIFSRPFGAGAPGSKIVVT 323 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~-~~~~l~~~l~-~~~~LlVlDd~~~~~--------~~~~~~l~~~~~~~~~gs~ilvT 323 (1024)
+.. ...+... +...+...-. +++.+|+||++..-. ....+.+...+.. .+..+|.|
T Consensus 240 -----------g~~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~a 305 (854)
T 1qvr_A 240 -----------GAK-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGA 305 (854)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEE
T ss_pred -----------cCc-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEe
Confidence 000 0111222 2222222223 368899999995421 1111122222221 23445555
Q ss_pred cCCchh-----hh-ccCCccceecCCCChHhHHHHHHhh
Q 044195 324 TRNLRV-----TV-NMGADQAYQLKELSNDDCLCLLTQI 356 (1024)
Q Consensus 324 tR~~~~-----~~-~~~~~~~~~l~~L~~~ea~~lf~~~ 356 (1024)
|..... .. .......+.+++.+.++..+++...
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 543321 11 1123346899999999999988643
No 207
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.69 E-value=4.2e-05 Score=76.33 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCC
Q 044195 188 KDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQ 267 (1024)
Q Consensus 188 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~ 267 (1024)
..++.+.+++..... ....+.+.|+|++|+|||+||+++++ ........++|+++. .+...+......
T Consensus 36 ~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~-- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYVP------ELFRELKHSLQD-- 103 (202)
T ss_dssp HHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEHH------HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEhH------HHHHHHHHHhcc--
Confidence 345566667665421 11226889999999999999999998 333334456676543 344444333221
Q ss_pred CCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHH--hhc-CCCCC-CCCcEEEEEcCC
Q 044195 268 SKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSI--FSR-PFGAG-APGSKIVVTTRN 326 (1024)
Q Consensus 268 ~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~--l~~-~~~~~-~~gs~ilvTtR~ 326 (1024)
.........+. . .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 104 ---~~~~~~~~~~~----~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ---QTMNEKLDYIK----K-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ---CCCHHHHHHHH----H-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ---chHHHHHHHhc----C-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 11222222222 1 2499999996533222211 111 11111 135578888874
No 208
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00022 Score=78.45 Aligned_cols=178 Identities=16% Similarity=0.173 Sum_probs=91.6
Q ss_pred CccccchhhHHHHHHHHHhCCC-------CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGL-------RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (1024)
.++.|-++.+++|.+.+..+-. .+-...+-|.++|++|+|||+||+++++ .....| +.++.++-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~---~~v~~~~l~~-- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAF---IRVNGSEFVH-- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEE---EEEEGGGTCC--
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCe---EEEecchhhc--
Confidence 4678899888888776643210 0123457799999999999999999998 333333 3333332111
Q ss_pred HHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCC----------C-C---HHHHHHhhcCCC--CCCCC
Q 044195 254 RVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWN----------E-N---YEYWSIFSRPFG--AGAPG 317 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~----------~-~---~~~~~~l~~~~~--~~~~g 317 (1024)
.........+...+...-...++++++|+++. . + ......+...+. ....+
T Consensus 245 -------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~ 311 (428)
T 4b4t_K 245 -------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN 311 (428)
T ss_dssp -------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCS
T ss_pred -------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCC
Confidence 00111112222223333356789999999831 0 0 011222222211 12245
Q ss_pred cEEEEEcCCchhh-hcc---C-CccceecCCCChHhH-HHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCC
Q 044195 318 SKIVVTTRNLRVT-VNM---G-ADQAYQLKELSNDDC-LCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGL 383 (1024)
Q Consensus 318 s~ilvTtR~~~~~-~~~---~-~~~~~~l~~L~~~ea-~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 383 (1024)
..||.||...+.. ..+ + -...+.++.+++.++ ..+|..+.-+ ......-++ ..|++.+.|.
T Consensus 312 v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~-~~l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 312 VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK-MSLAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp EEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHS-SCBCTTCCH----HHHHHHTTTC
T ss_pred EEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcC-CCCCcccCH----HHHHHHCCCC
Confidence 5677777654321 111 1 123567776765554 4566554322 211222223 4567777775
No 209
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.61 E-value=0.0029 Score=70.38 Aligned_cols=82 Identities=10% Similarity=0.165 Sum_probs=51.9
Q ss_pred hhCCCC-ceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCC---ccccC-cccccCCCCcEEecCCCcccccccc-cc
Q 044195 588 LLLDLP-RLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTN---IQILP-QSINSLYNLHTVLLEDCRRLKKLCK-DM 660 (1024)
Q Consensus 588 ~l~~l~-~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~---i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~-~i 660 (1024)
.|.+++ .|+.+.+..+ ++.+. ..|.++.+|+.+.+..+. ++.++ ..|..+.+|+.+.+..+ +..++. .+
T Consensus 58 aF~~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF 133 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAF 133 (394)
T ss_dssp TTTTCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTT
T ss_pred hccCCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhh
Confidence 455554 4888888754 66664 557788888888887653 55554 34666777777666542 344433 35
Q ss_pred CCCCcccEEeccC
Q 044195 661 GNLTKLHHLRNSN 673 (1024)
Q Consensus 661 ~~L~~L~~L~l~~ 673 (1024)
..+.+|+.+.+..
T Consensus 134 ~~c~~L~~i~lp~ 146 (394)
T 4gt6_A 134 HHCEELDTVTIPE 146 (394)
T ss_dssp TTCTTCCEEECCT
T ss_pred hhhcccccccccc
Confidence 6677777777654
No 210
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.61 E-value=7.5e-05 Score=78.16 Aligned_cols=62 Identities=15% Similarity=-0.031 Sum_probs=40.5
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCC
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSED 249 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 249 (1024)
.++|.+..+.++.+.+..... ....|.|+|++|+|||++|+.+++.. ...-...+.++++.-
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~--~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAAL 68 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTS--TTTTSCEEEEEGGGS
T ss_pred cceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhc--CccCCCeEEEecCCC
Confidence 488999998888877765321 22467899999999999999999732 111123455665543
No 211
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.61 E-value=4.6e-05 Score=74.60 Aligned_cols=109 Identities=16% Similarity=0.134 Sum_probs=69.2
Q ss_pred ccCCCCceEEecCCC-CCCCCCchhhh----hhhhhCCCCceEEEEeCCCCCccc-----CCccccCCCCCcEeeccCCC
Q 044195 559 IRGVQQLRTFLPMKL-SDYGGDYLAWS----VLQLLLDLPRLRVFSLCGYCNIID-----LPNEIGNLKHLRFLNLSRTN 628 (1024)
Q Consensus 559 ~~~~~~Lr~L~l~~~-~~~~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~l~~-----lp~~l~~l~~L~~L~L~~~~ 628 (1024)
+...++|++|.+.++ . +... ....+...++|++|+|++| .+.. +...+...++|++|+|++|.
T Consensus 32 l~~~~~L~~L~L~~n~~------i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMN------IPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HTTCTTCCEEECTTCTT------CCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HhcCCCCCEEEecCCCC------CCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 445677777777765 3 3222 2333466777888888887 4543 33445556778888888887
Q ss_pred ccc-----cCcccccCCCCcEEec--CCCccccc-----cccccCCCCcccEEeccCCc
Q 044195 629 IQI-----LPQSINSLYNLHTVLL--EDCRRLKK-----LCKDMGNLTKLHHLRNSNVH 675 (1024)
Q Consensus 629 i~~-----lp~~i~~L~~L~~L~l--~~~~~l~~-----lp~~i~~L~~L~~L~l~~~~ 675 (1024)
|.. +...+...++|++|++ ++| .+.. +...+...++|++|++++|.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 763 4566666777888888 666 3322 33345556778888887776
No 212
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.61 E-value=0.00019 Score=81.32 Aligned_cols=185 Identities=12% Similarity=0.072 Sum_probs=100.5
Q ss_pred CccccchhhHHHHHHHHHhCCCC-------CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLR-------ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (1024)
..++|.+..++++.+++...... +....+-|.|+|++|+|||++|+++++ +.... .+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~---fv~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAF---FFLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSE---EEEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCC---EEEEEch------
Confidence 35899999999998877542000 012345689999999999999999987 33222 2333321
Q ss_pred HHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCC--------C---HHHHHHhhcCCC--CCCCCcEE
Q 044195 254 RVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNE--------N---YEYWSIFSRPFG--AGAPGSKI 320 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~--------~---~~~~~~l~~~~~--~~~~gs~i 320 (1024)
++...+ .......+...+.....+++.+|+||+++.- . ......+...+. ....+..|
T Consensus 273 ----~l~~~~-----~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 ----EIMSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp ----HHHTSC-----TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred ----Hhhhhh-----cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 111111 1111222333444445677889999999310 1 011222222222 11234566
Q ss_pred EEEcCCch-hhhcc----CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCC-hHHHHHH
Q 044195 321 VVTTRNLR-VTVNM----GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGL-PLAAKTL 390 (1024)
Q Consensus 321 lvTtR~~~-~~~~~----~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~ 390 (1024)
|.||.... +...+ .-...+.+...+.++..+++..++.... ......+ ..+++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~-l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC-BCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC-CcchhhH----HHHHHHccCCcHHHHHHH
Confidence 66666542 22122 1224588899999999999987753221 1122222 4466677764 5445444
No 213
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.59 E-value=0.0024 Score=69.03 Aligned_cols=177 Identities=16% Similarity=0.150 Sum_probs=93.5
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (1024)
..++|.+..++.+...+..... .+.....+.|+|++|+||||||+.++. .....|. ..+..-...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~--~l~~~~~---~~sg~~~~~--------- 89 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIAS--ELQTNIH---VTSGPVLVK--------- 89 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHH--HHTCCEE---EEETTTCCS---------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCEE---EEechHhcC---------
Confidence 3578888777777766643200 012346799999999999999999997 3322211 111100001
Q ss_pred HhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCC--------C----------CCcEEE-
Q 044195 261 KSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAG--------A----------PGSKIV- 321 (1024)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~--------~----------~gs~il- 321 (1024)
...+.. +...+ .++.++++|++..-.....+.+...+... . +...++
T Consensus 90 ------------~~~l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 90 ------------QGDMAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp ------------HHHHHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred ------------HHHHHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 111111 11112 23457888988554332333332111100 0 112222
Q ss_pred EEcCCchhhhcc-CC-ccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044195 322 VTTRNLRVTVNM-GA-DQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKTL 390 (1024)
Q Consensus 322 vTtR~~~~~~~~-~~-~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 390 (1024)
.|++...+.... .. ...+.+++.+.++..+++.+.+..... .-..+.+..|+++++|.|-.+..+
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHHHHH
Confidence 244433221111 11 124789999999999999876532111 122366888999999999755443
No 214
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.59 E-value=8.1e-05 Score=79.21 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=36.9
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..++|++..+.++.+.+.... .....|.|+|.+|+|||++|+.+++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----PSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----STTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----CCCCcEEEECCCCchHHHHHHHHHH
Confidence 358999999999988887642 1234578999999999999999987
No 215
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00052 Score=74.28 Aligned_cols=179 Identities=17% Similarity=0.098 Sum_probs=95.9
Q ss_pred CccccchhhHHHHHHHHHhCCC-------CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGL-------RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (1024)
.++.|-++.+++|.+.+.-+-. .+-..++-|.++|++|+|||.||+++++ .....| +.|+.+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhc--
Confidence 4577888888887766543100 0123456789999999999999999998 444333 3333322110
Q ss_pred HHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCC--------C--H----HHHHHhhcCCC--CCCCC
Q 044195 254 RVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNE--------N--Y----EYWSIFSRPFG--AGAPG 317 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~--------~--~----~~~~~l~~~~~--~~~~g 317 (1024)
. ........+...+...-...+++|+||+++.- . . .....+...+. ....+
T Consensus 221 ------------k-~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 221 ------------K-YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp ------------S-STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred ------------c-ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 0 01111112222223333567999999998531 0 0 01222222221 12245
Q ss_pred cEEEEEcCCchhh-hcc----CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044195 318 SKIVVTTRNLRVT-VNM----GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLP 384 (1024)
Q Consensus 318 s~ilvTtR~~~~~-~~~----~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 384 (1024)
..||.||...+.. ..+ .-...+.++.-+.++..++|+.+.-+ ......-++ ..|++.+.|.-
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-~~l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK-MNLTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT-SBCCSSCCH----HHHHHHCCSCC
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC-CCCCccCCH----HHHHHHCCCCC
Confidence 5666677654332 111 23356788877888888888766432 211222233 45777887753
No 216
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.58 E-value=0.00028 Score=79.98 Aligned_cols=97 Identities=11% Similarity=0.047 Sum_probs=60.0
Q ss_pred eeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEE-EE---------cC----Cchhh-hccCCccceecCCCChHhHHHHH
Q 044195 289 FLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIV-VT---------TR----NLRVT-VNMGADQAYQLKELSNDDCLCLL 353 (1024)
Q Consensus 289 ~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~il-vT---------tR----~~~~~-~~~~~~~~~~l~~L~~~ea~~lf 353 (1024)
-++++|+++.-+.+.++.+...+...... .+| .| |. ...+. ........+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 39999999887777888887777655444 344 34 32 10110 11123345799999999999999
Q ss_pred HhhhcCCCCCCCCccHHHHHHHHHHHc-CCChHHHHHH
Q 044195 354 TQISLGTGDFNIHPSLKEVGEKIVMKC-KGLPLAAKTL 390 (1024)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~i~~~~-~g~PLai~~~ 390 (1024)
...+..... . -.++....|++.+ +|.|-.+..+
T Consensus 376 ~~~~~~~~~-~---~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEGI-N---ISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHTC-C---BCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhCC-C---CCHHHHHHHHHHccCCCHHHHHHH
Confidence 876421111 1 1235667788888 7888755444
No 217
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00064 Score=74.95 Aligned_cols=179 Identities=13% Similarity=0.088 Sum_probs=95.6
Q ss_pred CccccchhhHHHHHHHHHhCCC-------CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGL-------RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (1024)
.++.|-++.+++|.+.+.-+-. .+-..++-|.++|++|+|||+||+++++ .....| +.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEehhhhcc--
Confidence 4578888888888776643210 0123457899999999999999999998 333333 3333332111
Q ss_pred HHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCC-----------CH---HHHHHhhcCCC--CCCCC
Q 044195 254 RVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNE-----------NY---EYWSIFSRPFG--AGAPG 317 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~-----------~~---~~~~~l~~~~~--~~~~g 317 (1024)
. ........+...+...-...+++|+||+++.- +. .....+...+. ....+
T Consensus 254 ------------k-~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 320 (437)
T 4b4t_L 254 ------------K-YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ 320 (437)
T ss_dssp ------------S-SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS
T ss_pred ------------c-cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 0 01111112222223333567999999999531 00 11222322221 12245
Q ss_pred cEEEEEcCCchhh-hcc-C---CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044195 318 SKIVVTTRNLRVT-VNM-G---ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLP 384 (1024)
Q Consensus 318 s~ilvTtR~~~~~-~~~-~---~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 384 (1024)
..||.||...... ..+ . -...+.++.-+.++..++|+.+..+-.. ...-++ ..|++.+.|.-
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCH----HHHHHTCCSCC
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhCCCCC
Confidence 5677777654332 111 1 1245777776777778888766433211 122223 45677777753
No 218
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.56 E-value=0.00052 Score=83.56 Aligned_cols=154 Identities=16% Similarity=0.158 Sum_probs=86.3
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhh----ccCCceEEE-EecCCCCHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQ----RRFQIKAWT-FVSEDFNVFRV 255 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv-~~~~~~~~~~~ 255 (1024)
..++||+.+++++.+.|... ...-+.|+|++|+|||++|+.++...... ......+|. +.+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 35899999999999998543 33467899999999999999998732100 011223321 11110
Q ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHh-CCCceeEEeeccCCC--------CHHH-HHHhhcCCCCCCCCcEEEEEcC
Q 044195 256 TKSILKSITNDQSKDDDLNWVQEKLKKQL-SGKKFLLVLDDVWNE--------NYEY-WSIFSRPFGAGAPGSKIVVTTR 325 (1024)
Q Consensus 256 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDd~~~~--------~~~~-~~~l~~~~~~~~~gs~ilvTtR 325 (1024)
+.+.. .....+.....+.+.+ ..++.+|+||+++.- ...+ ...+...+.. .+..+|.+|.
T Consensus 254 -------~~~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~at~ 323 (758)
T 1r6b_X 254 -------LAGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTT 323 (758)
T ss_dssp --------CCCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEEC
T ss_pred -------hcccc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEEEeC
Confidence 00111 1122333333333333 446789999999643 1222 2334443332 3456666665
Q ss_pred Cchhhhc-------cCCccceecCCCChHhHHHHHHhh
Q 044195 326 NLRVTVN-------MGADQAYQLKELSNDDCLCLLTQI 356 (1024)
Q Consensus 326 ~~~~~~~-------~~~~~~~~l~~L~~~ea~~lf~~~ 356 (1024)
....... ......+.+.+.+.++..+++...
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHH
Confidence 4332111 112236889999999988888754
No 219
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.51 E-value=5.8e-05 Score=77.67 Aligned_cols=79 Identities=18% Similarity=0.285 Sum_probs=49.3
Q ss_pred CCCCceEEEEeCCCCCcccC---CccccCCCCCcEeeccCCCccccCcccccCC--CCcEEecCCCcccccccc------
Q 044195 590 LDLPRLRVFSLCGYCNIIDL---PNEIGNLKHLRFLNLSRTNIQILPQSINSLY--NLHTVLLEDCRRLKKLCK------ 658 (1024)
Q Consensus 590 ~~l~~L~~L~L~~~~~l~~l---p~~l~~l~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~l~~~~~l~~lp~------ 658 (1024)
..+++|++|+|++| .+..+ |..+..+++|++|+|++|.|+.+ ..+..+. +|+.|++++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 45777788888877 56554 34456777777777777777765 2344444 777777777743333331
Q ss_pred -ccCCCCcccEEe
Q 044195 659 -DMGNLTKLHHLR 670 (1024)
Q Consensus 659 -~i~~L~~L~~L~ 670 (1024)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 245566666665
No 220
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.50 E-value=0.00022 Score=86.77 Aligned_cols=145 Identities=17% Similarity=0.189 Sum_probs=80.5
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhcc------CCceE-EEEecCCCCHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRR------FQIKA-WTFVSEDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~------f~~~~-wv~~~~~~~~~ 253 (1024)
..+|||+.+++++...|.... ..-+.|+|++|+|||++|+.+++. .... ....+ .++.+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~--l~~~~~p~~l~~~~~~~~~~g~----- 246 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMGT----- 246 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHH--HhcCCCChhhcCCeEEEecccc-----
Confidence 359999999999999997542 235789999999999999999873 2111 01111 121100
Q ss_pred HHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchhhh--
Q 044195 254 RVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRVTV-- 331 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~-- 331 (1024)
...+. .... +...+......++.+|++|.- ....+.+...+.. ...++|.||.......
T Consensus 247 --------~~~G~--~e~~---l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~ 307 (758)
T 3pxi_A 247 --------KYRGE--FEDR---LKKVMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYI 307 (758)
T ss_dssp ----------------CTT---HHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHH
T ss_pred --------cccch--HHHH---HHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHhc--CCEEEEeCCChHHHHHHh
Confidence 00000 0111 222233333467889999921 2223334444432 2356676666544211
Q ss_pred ----c-cCCccceecCCCChHhHHHHHHhhh
Q 044195 332 ----N-MGADQAYQLKELSNDDCLCLLTQIS 357 (1024)
Q Consensus 332 ----~-~~~~~~~~l~~L~~~ea~~lf~~~a 357 (1024)
. ......+.+++.+.++..+++....
T Consensus 308 ~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1 1123568999999999999998653
No 221
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.49 E-value=0.0012 Score=68.45 Aligned_cols=184 Identities=13% Similarity=0.062 Sum_probs=92.2
Q ss_pred CccccchhhHHHHHHHHHh---CCC---CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHH
Q 044195 181 AKVYGREKDKEAIVELLLR---DGL---RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFR 254 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (1024)
.+++|.+..++++.+.+.. ... .+....+-+.|+|++|+||||+|+.+++. .... .+.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVP---FFTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCC---EEEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCC---EEEEeHHHHHH---
Confidence 3588988877776654432 100 00112345889999999999999999972 2222 23333222110
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCC------------C--HHHHHHhhcCCC--CCCCCc
Q 044195 255 VTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNE------------N--YEYWSIFSRPFG--AGAPGS 318 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~------------~--~~~~~~l~~~~~--~~~~gs 318 (1024)
.. .......+...+.......+.++++|+++.- . ......+...+. ....+.
T Consensus 84 -------~~-----~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 84 -------MF-----VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp -------SC-----CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred -------Hh-----hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 00 0111223333344444556789999998220 0 011122221111 112345
Q ss_pred EEEEEcCCch-hhhcc-C---CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCC-ChHHHHH
Q 044195 319 KIVVTTRNLR-VTVNM-G---ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKG-LPLAAKT 389 (1024)
Q Consensus 319 ~ilvTtR~~~-~~~~~-~---~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~ 389 (1024)
.||.||.... +.... . -...+.+...+.++-.+++..+.... ....... ...+++.+.| .+--+..
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~-~l~~~~~----~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV-PLAPDID----AAIIARGTPGFSGADLAN 223 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC-CCCcccc----HHHHHHHcCCCCHHHHHH
Confidence 6676776543 21111 1 12456777777788788877654221 1111111 2346777777 6644443
No 222
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.44 E-value=0.0031 Score=69.71 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=30.9
Q ss_pred ceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCccccCcc-cccCCCCcEEecCCCccccccccccCCCCcccEEec
Q 044195 594 RLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQILPQS-INSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRN 671 (1024)
Q Consensus 594 ~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l 671 (1024)
+|+.+.+... ++.++ ..+.++.+|+.+.|..+ ++.++.. +.++ +|+.+.+.. .+..++...-...+|+.+.+
T Consensus 47 ~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~~L~~i~l 120 (379)
T 4h09_A 47 RISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGTDLDDFEF 120 (379)
T ss_dssp GCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTTCCCSEEEC
T ss_pred CCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc--eeeEeccceeccCCcccccC
Confidence 3444444332 44443 33455555555555432 4444322 3333 344444432 23333332222235555555
Q ss_pred cC
Q 044195 672 SN 673 (1024)
Q Consensus 672 ~~ 673 (1024)
.+
T Consensus 121 p~ 122 (379)
T 4h09_A 121 PG 122 (379)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 223
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.42 E-value=0.00055 Score=73.42 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=36.9
Q ss_pred CccccchhhHHHHHHHHHhC--CCC------CCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 181 AKVYGREKDKEAIVELLLRD--GLR------ADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~--~~~------~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..++|.+..++.+...+... ... .......+.|+|++|+|||++|+.+++
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 35899999999988877641 000 001235688999999999999999987
No 224
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00069 Score=74.59 Aligned_cols=177 Identities=13% Similarity=0.060 Sum_probs=92.7
Q ss_pred CccccchhhHHHHHHHHHhCCC-------CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGL-------RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (1024)
.++.|-++.+++|.+.+..+-. .+-..++-|.++|++|+|||.||+++++ .....| +.++.+.-
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l---- 251 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF---LKLAAPQL---- 251 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGG----
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE---EEEehhhh----
Confidence 4578888888888765432100 0223467899999999999999999998 333333 23332221
Q ss_pred HHHHHHHHhccCCCCCCCcHHHHHHHH-HHHhCCCceeEEeeccCC------C-----CH---HHHHHhhcCCCC--CCC
Q 044195 254 RVTKSILKSITNDQSKDDDLNWVQEKL-KKQLSGKKFLLVLDDVWN------E-----NY---EYWSIFSRPFGA--GAP 316 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l-~~~l~~~~~LlVlDd~~~------~-----~~---~~~~~l~~~~~~--~~~ 316 (1024)
... .....+...+.+ ...-...+++|+||+++. . .. .....+...+.. ...
T Consensus 252 ----------~~~--~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 252 ----------VQM--YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp ----------CSS--CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred ----------hhc--ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 100 011112222222 222245789999999832 0 00 011222222221 223
Q ss_pred CcEEEEEcCCchhh-hcc-C---CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCC
Q 044195 317 GSKIVVTTRNLRVT-VNM-G---ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGL 383 (1024)
Q Consensus 317 gs~ilvTtR~~~~~-~~~-~---~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 383 (1024)
+..||.||...+.. ..+ . -...+.++.-+.++..++|+.+.-.-. ....-++ ..|++.+.|.
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT-TDDDINW----QELARSTDEF 386 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSC-BCSCCCH----HHHHHHCSSC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCC-CCCcCCH----HHHHHhCCCC
Confidence 45666677665332 111 1 224577777777777888876542211 1111222 4577778775
No 225
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.00093 Score=72.53 Aligned_cols=177 Identities=15% Similarity=0.081 Sum_probs=92.6
Q ss_pred CccccchhhHHHHHHHHHhCCC-------CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGL-------RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (1024)
.++.|-++.+++|.+.+.-+-. .+-...+-|.++|++|+|||.||+++++ .....| +.++.++-
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f---i~v~~s~l---- 252 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF---LRIVGSEL---- 252 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE---EEEESGGG----
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE---EEEEHHHh----
Confidence 4577888888888766543110 0223457899999999999999999998 333333 22332211
Q ss_pred HHHHHHHHhccCCCCCCCcHHHHHHH-HHHHhCCCceeEEeeccCCC-----------C---HHHHHHhhcCCC--CCCC
Q 044195 254 RVTKSILKSITNDQSKDDDLNWVQEK-LKKQLSGKKFLLVLDDVWNE-----------N---YEYWSIFSRPFG--AGAP 316 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDd~~~~-----------~---~~~~~~l~~~~~--~~~~ 316 (1024)
... ...+.+...+. +...-...+++|+||+++.. + ......+...+. ....
T Consensus 253 ----------~sk--~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 253 ----------IQK--YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp ----------CCS--SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred ----------hhc--cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 000 01112222222 22233567899999998431 0 011222222111 1224
Q ss_pred CcEEEEEcCCchhh-hcc-C---CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCC
Q 044195 317 GSKIVVTTRNLRVT-VNM-G---ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGL 383 (1024)
Q Consensus 317 gs~ilvTtR~~~~~-~~~-~---~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 383 (1024)
+..||.||...+.. ..+ . -...+.+..-+.++..++|..+.-. .....+-++ ..|++.+.|.
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~-~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK-MNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT-SCBCSCCCH----HHHHHHCCSC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC-CCCCCcCCH----HHHHHhCCCC
Confidence 45666677654332 122 1 1234667766777777888766432 221222233 4466777765
No 226
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.36 E-value=6.6e-05 Score=73.47 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=78.3
Q ss_pred hhhhhhhCCCCceEEEEeCCCCCccc-----CCccccCCCCCcEeeccCCCcc-----ccCcccccCCCCcEEecCCCcc
Q 044195 583 WSVLQLLLDLPRLRVFSLCGYCNIID-----LPNEIGNLKHLRFLNLSRTNIQ-----ILPQSINSLYNLHTVLLEDCRR 652 (1024)
Q Consensus 583 ~~~~~~l~~l~~L~~L~L~~~~~l~~-----lp~~l~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~ 652 (1024)
......+...+.|++|+|++|..+.. +...+...++|++|+|++|.+. .+...+...++|++|++++| .
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~ 104 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-F 104 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-C
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-c
Confidence 34445568899999999999833432 4566777899999999999987 34556667789999999998 4
Q ss_pred ccc-----cccccCCCCcccEEec--cCCccccc-----cCccCCCCCCCCcc
Q 044195 653 LKK-----LCKDMGNLTKLHHLRN--SNVHSLEE-----MPKGFGKLTCLTTL 693 (1024)
Q Consensus 653 l~~-----lp~~i~~L~~L~~L~l--~~~~~l~~-----~p~~i~~l~~L~~L 693 (1024)
+.. +...+...++|++|++ ++|. ++. +...+...+.|+.|
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L 156 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKF 156 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEE
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEE
Confidence 433 4566778899999999 7777 443 22233444555555
No 227
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.35 E-value=5.3e-05 Score=70.87 Aligned_cols=39 Identities=18% Similarity=0.084 Sum_probs=27.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSE 248 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 248 (1024)
...++|+|+.|+|||||++.++.... ..=..++++...+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~--~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQAL--EAGKNAAYIDAAS 74 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHH--TTTCCEEEEETTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEcHHH
Confidence 35899999999999999999998322 2111256665443
No 228
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.34 E-value=0.00075 Score=75.69 Aligned_cols=179 Identities=13% Similarity=0.031 Sum_probs=95.2
Q ss_pred CccccchhhHHHHHHHHHhCCC------CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGL------RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFR 254 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (1024)
.+++|.++.++++.+....-.. -+....+-|.|+|++|+|||+||++++. +.... .+.+++++-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~--~~~~~---f~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG--EANVP---FFHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH--HHTCC---EEEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HcCCC---eeeCCHHHHHHH--
Confidence 3588988877777665432110 0111234588999999999999999997 33222 233443322110
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCC--------------HHHHHHhhcCCC--CCCCCc
Q 044195 255 VTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNEN--------------YEYWSIFSRPFG--AGAPGS 318 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~--------------~~~~~~l~~~~~--~~~~gs 318 (1024)
+ ...........+.......+.+|+||++..-. ......+...+. ....+.
T Consensus 89 --------~-----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 --------F-----VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp --------C-----TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred --------H-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 0 00111223334444456778999999994411 012233322221 112455
Q ss_pred EEEEEcCCchhhh-c-cC---CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044195 319 KIVVTTRNLRVTV-N-MG---ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLP 384 (1024)
Q Consensus 319 ~ilvTtR~~~~~~-~-~~---~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 384 (1024)
.||.||...+... . .. -...+.+...+.++-.+++..++.... .....+ ...|++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-Ccchhh----HHHHHHhcCCCc
Confidence 6777776654321 1 11 123677888787787888876653221 111112 334778888876
No 229
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.33 E-value=0.00022 Score=86.61 Aligned_cols=155 Identities=16% Similarity=0.202 Sum_probs=87.5
Q ss_pred CccccchhhHHHHHHHHHhCCC---CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGL---RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTK 257 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (1024)
..++|.+..++.+...+..... ..+.....+.++|++|+|||++|+++++ .....-...+.++++.-.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~--~l~~~~~~~i~i~~s~~~~~----- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE--SIFGDEESMIRIDMSEYMEK----- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH--HHHSCTTCEEEEEGGGGCSS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH--HhcCCCcceEEEechhcccc-----
Confidence 4589999999888888875431 0122334799999999999999999997 32222234455655432210
Q ss_pred HHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCC-----------CCCcEEEEEcCC
Q 044195 258 SILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAG-----------APGSKIVVTTRN 326 (1024)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~-----------~~gs~ilvTtR~ 326 (1024)
.... ...+...++ .....+|+||++..........+...+..+ ....+||+||..
T Consensus 564 ---------~~~~--~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 564 ---------HSTS--GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ---------CCCC-----CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ---------cccc--cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0000 111111121 223459999999776666555554433221 135688888873
Q ss_pred chh---------hhcc-----CC-ccceecCCCChHhHHHHHHhh
Q 044195 327 LRV---------TVNM-----GA-DQAYQLKELSNDDCLCLLTQI 356 (1024)
Q Consensus 327 ~~~---------~~~~-----~~-~~~~~l~~L~~~ea~~lf~~~ 356 (1024)
..- ...+ .. ...+.+.+++.++...++...
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 110 0001 11 246788888888877777654
No 230
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.00047 Score=75.62 Aligned_cols=178 Identities=17% Similarity=0.110 Sum_probs=94.0
Q ss_pred CccccchhhHHHHHHHHHhCCC-------CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGL-------RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (1024)
.++.|-++.+++|.+.+.-+-. -+-..++-|.++|++|+|||.||+++++ +....| +.++.+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L~--- 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSELV--- 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGC---
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHhh---
Confidence 3577888888888765432100 0123567889999999999999999998 443333 333322211
Q ss_pred HHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCC--------C---H---HHHHHhhcCCC--CCCCC
Q 044195 254 RVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNE--------N---Y---EYWSIFSRPFG--AGAPG 317 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~--------~---~---~~~~~l~~~~~--~~~~g 317 (1024)
.. ........+...+...-...+++|+||++... . . .....+...+. ....+
T Consensus 281 -----------sk-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 281 -----------QK-YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp -----------CC-SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred -----------cc-cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 00 01111122222233333567999999998531 0 0 01112222111 12234
Q ss_pred cEEEEEcCCchhh-hcc---C-CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCC
Q 044195 318 SKIVVTTRNLRVT-VNM---G-ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGL 383 (1024)
Q Consensus 318 s~ilvTtR~~~~~-~~~---~-~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 383 (1024)
..||.||...... ..+ + -...+.+..-+.++..++|+.+... ......-++ ..|++.+.|.
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~-~~l~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS-MSVERGIRW----ELISRLCPNS 414 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT-SCBCSSCCH----HHHHHHCCSC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC-CCCCCCCCH----HHHHHHCCCC
Confidence 5566677654321 111 1 2356777777888888888766432 211222223 4467778775
No 231
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.28 E-value=0.0002 Score=75.01 Aligned_cols=157 Identities=13% Similarity=0.038 Sum_probs=79.9
Q ss_pred CccccchhhHHHHHHHHHhCCCC------CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLR------ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFR 254 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (1024)
.+++|.+..++.+.+.+..-..+ +....+-+.|+|++|+|||++|+++++ .....| +.+..+.-.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~--~~~~~~---~~v~~~~~~---- 81 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG--EAHVPF---FSMGGSSFI---- 81 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH--HHTCCC---CCCCSCTTT----
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EEechHHHH----
Confidence 35899988888887765421000 001123478999999999999999997 333222 111111110
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHH---------------HHHHhhcCCCCC---CC
Q 044195 255 VTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYE---------------YWSIFSRPFGAG---AP 316 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~---------------~~~~l~~~~~~~---~~ 316 (1024)
....+.. ...... .+......++.+|+||++..-... ....+...+... ..
T Consensus 82 ------~~~~~~~--~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 82 ------EMFVGLG--ASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp ------TSCSSSC--SSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred ------HhhcchH--HHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 0011110 111111 122222346789999999432110 122222222211 12
Q ss_pred CcEEEEEcCCchhhh-cc-C---CccceecCCCChHhHHHHHHhhh
Q 044195 317 GSKIVVTTRNLRVTV-NM-G---ADQAYQLKELSNDDCLCLLTQIS 357 (1024)
Q Consensus 317 gs~ilvTtR~~~~~~-~~-~---~~~~~~l~~L~~~ea~~lf~~~a 357 (1024)
...||.||....... .. . -...+.++..+.++..+++...+
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 245666776553211 11 1 12457788888888888887654
No 232
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.21 E-value=0.003 Score=75.12 Aligned_cols=179 Identities=13% Similarity=0.080 Sum_probs=97.1
Q ss_pred CccccchhhHHHHHHHHHh----CC---CCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHH
Q 044195 181 AKVYGREKDKEAIVELLLR----DG---LRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (1024)
.++.|-++.+++|.+++.- +. .-+-..++-|.++|++|+|||+||+++++. ...+| +.|+.++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHH-----
Confidence 4577888888888776542 11 002235678999999999999999999983 33332 3343221
Q ss_pred HHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCC-----------HHHHHHhhcCCCC--CCCCcEE
Q 044195 254 RVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNEN-----------YEYWSIFSRPFGA--GAPGSKI 320 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~-----------~~~~~~l~~~~~~--~~~gs~i 320 (1024)
+... ........+...+....+..+.+|+||+++.-. ......+...+.. ...+..|
T Consensus 274 -----l~sk-----~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 274 -----IMSK-----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp -----HHSS-----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred -----hhcc-----cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 1111 011122233334444456789999999994310 1112222222211 1133455
Q ss_pred EEEcCCch-hhhccC----CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044195 321 VVTTRNLR-VTVNMG----ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLP 384 (1024)
Q Consensus 321 lvTtR~~~-~~~~~~----~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 384 (1024)
|.||...+ +-..+. -.+.+.+..-+.++-.++|..+..+ .....+.+ ...|++++.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~-~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN-MKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS-SEECTTCC----HHHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcC-CCCCcccC----HHHHHHhcCCCC
Confidence 55665432 222222 1246788888888888888876432 11122222 345777887764
No 233
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.15 E-value=0.00021 Score=73.57 Aligned_cols=80 Identities=21% Similarity=0.205 Sum_probs=60.6
Q ss_pred cCCCCCcEeeccCCCcccc---CcccccCCCCcEEecCCCccccccccccCCCC--cccEEeccCCccccccCc------
Q 044195 614 GNLKHLRFLNLSRTNIQIL---PQSINSLYNLHTVLLEDCRRLKKLCKDMGNLT--KLHHLRNSNVHSLEEMPK------ 682 (1024)
Q Consensus 614 ~~l~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~--~L~~L~l~~~~~l~~~p~------ 682 (1024)
.++++|++|+|++|.++.+ |..+..+++|+.|+|++| .+..+ ..+..+. +|++|++++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 5689999999999999865 466779999999999998 66665 3355555 999999999983334442
Q ss_pred -cCCCCCCCCccCc
Q 044195 683 -GFGKLTCLTTLCR 695 (1024)
Q Consensus 683 -~i~~l~~L~~L~~ 695 (1024)
.+..+++|+.|+.
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 2556777777743
No 234
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.99 E-value=0.00031 Score=74.78 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhh-ccCCceEEEEe
Q 044195 187 EKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQ-RRFQIKAWTFV 246 (1024)
Q Consensus 187 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~ 246 (1024)
...++.+.+++.... ....+.+.|+|++|+|||+||.++++. .. ..-..++++++
T Consensus 134 ~~~~~~~~~~i~~~~---~~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 134 MEAFSAILDFVEQYP---SAEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHCS---CSSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHHHhcc---ccCCceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEH
Confidence 344556667776542 112467899999999999999999983 33 33334556654
No 235
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.97 E-value=0.0012 Score=80.45 Aligned_cols=135 Identities=18% Similarity=0.215 Sum_probs=72.5
Q ss_pred CccccchhhHHHHHHHHHhCCC---CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGL---RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTK 257 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (1024)
..++|.+..++.+...+..... ..+.....+.++|++|+|||++|+.+++ ... ...+.++++.-.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~--~l~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--ALG---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH--HHT---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH--Hhc---CCEEEEechhhcchhh---
Confidence 3578999888888777754311 0122345799999999999999999987 232 2334455443221100
Q ss_pred HHHHhccCCCCCCCcHHHHHHHHHHHh-CCCceeEEeeccCCCCHHHHHHhhcCCCCCC-----------CCcEEEEEcC
Q 044195 258 SILKSITNDQSKDDDLNWVQEKLKKQL-SGKKFLLVLDDVWNENYEYWSIFSRPFGAGA-----------PGSKIVVTTR 325 (1024)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~-----------~gs~ilvTtR 325 (1024)
...+.+.+.+....+. ...+...+ +....+|+||++........+.+...+..+. .+..||.||.
T Consensus 530 --~~~l~g~~~g~~g~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN 606 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFDQ-GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_dssp --CSSSCCCCSCSHHHHH-TTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEEC
T ss_pred --HhhhcCCCCCCcCccc-cchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecC
Confidence 0111111111100000 01122222 2346799999997766666665554443210 2345777776
Q ss_pred C
Q 044195 326 N 326 (1024)
Q Consensus 326 ~ 326 (1024)
.
T Consensus 607 ~ 607 (758)
T 1r6b_X 607 A 607 (758)
T ss_dssp S
T ss_pred c
Confidence 4
No 236
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.97 E-value=0.002 Score=67.99 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..++.+.++|++|+|||+||+++++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456889999999999999999998
No 237
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.95 E-value=0.0081 Score=67.88 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=35.2
Q ss_pred cccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 044195 183 VYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 183 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
++|++..++.+...+... .-|.|+|++|+|||+||+.+++.
T Consensus 24 ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp CSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 889999888888777654 36899999999999999999973
No 238
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.92 E-value=0.0019 Score=79.34 Aligned_cols=135 Identities=15% Similarity=0.236 Sum_probs=73.1
Q ss_pred ccccchhhHHHHHHHHHhCCC---CCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGL---RADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKS 258 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (1024)
.++|.+..++.+...+..... ..+.....+.|+|++|+|||++|+.+++. ....-...+.++++.-....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~----- 631 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH----- 631 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSG-----
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchh-----
Confidence 579999999988888765321 01223468999999999999999999872 21111233445544322210
Q ss_pred HHHhccCCCC---CCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCC-----------CCcEEEEEc
Q 044195 259 ILKSITNDQS---KDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGA-----------PGSKIVVTT 324 (1024)
Q Consensus 259 il~~l~~~~~---~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~-----------~gs~ilvTt 324 (1024)
....+.+... +......+...++. ...-+|+||++........+.+...+..+. .+..||+||
T Consensus 632 ~~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 632 AVSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp GGGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred HHHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 0011111110 00001112222221 234699999997777666666655554331 244577777
Q ss_pred CC
Q 044195 325 RN 326 (1024)
Q Consensus 325 R~ 326 (1024)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 239
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.87 E-value=0.023 Score=62.60 Aligned_cols=103 Identities=2% Similarity=-0.040 Sum_probs=62.1
Q ss_pred ccccCCCCceEEecCCCCCCCCCchhhhhhhhhCCCCceEEEEeCCCCCcccCC-ccccCCCCCcEeeccCCCccccCcc
Q 044195 557 DFIRGVQQLRTFLPMKLSDYGGDYLAWSVLQLLLDLPRLRVFSLCGYCNIIDLP-NEIGNLKHLRFLNLSRTNIQILPQS 635 (1024)
Q Consensus 557 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~~ 635 (1024)
+.+....+|+++.+.+. ++......|.+|.+|+.++|..+ +..++ ..+.++ .|..+.+..+ ++.++..
T Consensus 40 ~~~~~~~~i~~v~ip~~-------vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~ 108 (379)
T 4h09_A 40 PWYKDRDRISEVRVNSG-------ITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER-VKKFGDY 108 (379)
T ss_dssp TTGGGGGGCSEEEECTT-------EEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT-CCEECTT
T ss_pred cccccccCCEEEEeCCC-------ccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce-eeEeccc
Confidence 34556677888877543 22333456789999999999754 66776 445555 6777777543 6666554
Q ss_pred cccCCCCcEEecCCCccccccccccCCCCcccEEecc
Q 044195 636 INSLYNLHTVLLEDCRRLKKLCKDMGNLTKLHHLRNS 672 (1024)
Q Consensus 636 i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~ 672 (1024)
.....+|+.+.+..+ +..+....-.-.+|..+.+.
T Consensus 109 aF~~~~L~~i~lp~~--~~~i~~~~F~~~~l~~~~~~ 143 (379)
T 4h09_A 109 VFQGTDLDDFEFPGA--TTEIGNYIFYNSSVKRIVIP 143 (379)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCCCCEEEEC
T ss_pred eeccCCcccccCCCc--cccccccccccceeeeeecc
Confidence 434457888888763 33333332222345555443
No 240
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.86 E-value=0.0015 Score=75.35 Aligned_cols=164 Identities=17% Similarity=0.147 Sum_probs=77.3
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (1024)
.+++|-+.....+.+.+.-..........++.|+|++|+||||||+.++. .....| ..+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~--~l~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK--SLGRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH--HHTCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH--hcCCCe---EEEEecccchhhhhhhHHH
Confidence 45788887777775544321100112456899999999999999999987 332222 2222332222111111100
Q ss_pred HhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCCHH----HHHHhhcCCCCCC---------------CCcEEE
Q 044195 261 KSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNENYE----YWSIFSRPFGAGA---------------PGSKIV 321 (1024)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~~~----~~~~l~~~~~~~~---------------~gs~il 321 (1024)
..++. ....+...+.. .....-+++||++..-... ....+...+.... ....||
T Consensus 156 ~~ig~------~~~~~~~~~~~-a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVGA------MPGRIIQGMKK-AGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHT-TCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhcc------CchHHHHHHHH-hhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 11110 00111111221 1223348899999654322 1233333332111 234666
Q ss_pred EEcCCchh-h-hccCCccceecCCCChHhHHHHHHhh
Q 044195 322 VTTRNLRV-T-VNMGADQAYQLKELSNDDCLCLLTQI 356 (1024)
Q Consensus 322 vTtR~~~~-~-~~~~~~~~~~l~~L~~~ea~~lf~~~ 356 (1024)
.||..... . ........+.+.+++.++-.+++..+
T Consensus 229 ~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~ 265 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDH 265 (543)
T ss_dssp EECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHT
T ss_pred eccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHH
Confidence 66665321 1 11112246788889888888887765
No 241
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.83 E-value=0.00062 Score=70.99 Aligned_cols=68 Identities=18% Similarity=0.284 Sum_probs=45.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEe--cCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFV--SEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLS 285 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (1024)
.+++.|+|++|+|||+||.+++.. .-..++|++. .+..+. ...+.+.....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~----------------~~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG----------------YNTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT----------------CBCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh----------------hhcCHHHHHHHHHHHHh
Confidence 367889999999999999999873 2224567777 332110 01345556666666666
Q ss_pred CCceeEEeeccC
Q 044195 286 GKKFLLVLDDVW 297 (1024)
Q Consensus 286 ~~~~LlVlDd~~ 297 (1024)
..+ +||+|++.
T Consensus 182 ~~~-LLVIDsI~ 192 (331)
T 2vhj_A 182 QHR-VIVIDSLK 192 (331)
T ss_dssp HCS-EEEEECCT
T ss_pred hCC-EEEEeccc
Confidence 556 99999994
No 242
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.77 E-value=0.00085 Score=72.69 Aligned_cols=151 Identities=12% Similarity=0.087 Sum_probs=82.7
Q ss_pred ccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 182 KVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
.++|++..++.+...+... ..+.++|++|+|||+||+.+++ ..... ...+.+.......++. .
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~--~~~~~---~~~i~~~~~~~~~~l~----g 90 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAK--TMDLD---FHRIQFTPDLLPSDLI----G 90 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHH--HTTCC---EEEEECCTTCCHHHHH----E
T ss_pred ceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHH--HhCCC---eEEEecCCCCChhhcC----C
Confidence 4889999998888887653 3588999999999999999987 33222 2234443333333321 1
Q ss_pred hccCCCCCCCcHHHHHHHHHHHhCC--CceeEEeeccCCCCHHHHHHhhcCCCC-----------CCCCcEEEEEcCCch
Q 044195 262 SITNDQSKDDDLNWVQEKLKKQLSG--KKFLLVLDDVWNENYEYWSIFSRPFGA-----------GAPGSKIVVTTRNLR 328 (1024)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDd~~~~~~~~~~~l~~~~~~-----------~~~gs~ilvTtR~~~ 328 (1024)
......... .. ..-.+ ...++++|++..........+...+.. ......|+.|+....
T Consensus 91 ~~~~~~~~~-~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~ 161 (331)
T 2r44_A 91 TMIYNQHKG-NF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVE 161 (331)
T ss_dssp EEEEETTTT-EE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTC
T ss_pred ceeecCCCC-ce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCc
Confidence 111000000 00 00001 136999999977655544444332221 112345555665322
Q ss_pred ------hhhc-cCCcc-ceecCCCChHhHHHHHHhhhc
Q 044195 329 ------VTVN-MGADQ-AYQLKELSNDDCLCLLTQISL 358 (1024)
Q Consensus 329 ------~~~~-~~~~~-~~~l~~L~~~ea~~lf~~~a~ 358 (1024)
+... ..... .+.+.+.+.++-.+++...+.
T Consensus 162 ~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 162 QEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred ccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 1111 11212 478888888888888877653
No 243
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.57 E-value=0.0076 Score=60.58 Aligned_cols=85 Identities=21% Similarity=0.090 Sum_probs=52.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccC-----------C-CCCCCcHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITN-----------D-QSKDDDLN 274 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~-----------~-~~~~~~~~ 274 (1024)
...++.|+|++|+||||||..++. ..-..++|++.....+...+.. +....+. . .....+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 345899999999999999999986 1224677888766555544432 3332221 1 11112223
Q ss_pred HHHHHHHHHhCCCceeEEeeccC
Q 044195 275 WVQEKLKKQLSGKKFLLVLDDVW 297 (1024)
Q Consensus 275 ~~~~~l~~~l~~~~~LlVlDd~~ 297 (1024)
.....++..+..++-+||+|.+.
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcH
Confidence 34444555554457799999874
No 244
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.48 E-value=0.0022 Score=63.96 Aligned_cols=114 Identities=10% Similarity=-0.061 Sum_probs=63.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCC--CCcHHHHHHHHHHHh
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSK--DDDLNWVQEKLKKQL 284 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~l 284 (1024)
...++.|+|..|+||||++..+++ +...+-..++.+....... ....++..++..... .....++...+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 347899999999999999999887 3433333344443332211 112334444332211 122344455555444
Q ss_pred CCC-ceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCch
Q 044195 285 SGK-KFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLR 328 (1024)
Q Consensus 285 ~~~-~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~ 328 (1024)
.+. .-+||+|.+..-..+..+.+.. +.+ .|..||+|.++.+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecccc
Confidence 444 4599999996544344444322 222 2678999998643
No 245
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.47 E-value=0.015 Score=70.53 Aligned_cols=156 Identities=14% Similarity=0.082 Sum_probs=84.5
Q ss_pred CccccchhhHHHHHHHHHhCC-------CCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHH
Q 044195 181 AKVYGREKDKEAIVELLLRDG-------LRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (1024)
.+++|.+..++++.+++...- .-.-.....|.|+|++|+||||||+.++.. ....| +.++.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH-----
Confidence 568999999999988876410 001123457999999999999999999873 32222 3333211
Q ss_pred HHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCCC-----------HHHHHHhh---cCCCCCCCCcE
Q 044195 254 RVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNEN-----------YEYWSIFS---RPFGAGAPGSK 319 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~~-----------~~~~~~l~---~~~~~~~~gs~ 319 (1024)
+.... .......+...+.......+.++++|++.... ......+. ..+.. ..+..
T Consensus 274 ---------l~~~~-~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~~~v~ 342 (806)
T 1ypw_A 274 ---------IMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAHVI 342 (806)
T ss_dssp ---------HSSSS-TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-TSCCE
T ss_pred ---------hhhhh-hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-cccEE
Confidence 10000 11111222233333344568899999993210 01111222 22221 13445
Q ss_pred EEEEcCCch-hhhccC----CccceecCCCChHhHHHHHHhhh
Q 044195 320 IVVTTRNLR-VTVNMG----ADQAYQLKELSNDDCLCLLTQIS 357 (1024)
Q Consensus 320 ilvTtR~~~-~~~~~~----~~~~~~l~~L~~~ea~~lf~~~a 357 (1024)
+|.||.... +...+. -...+.+...+.++..+++...+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 666666532 211111 12346777888888888887664
No 246
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.45 E-value=0.011 Score=60.89 Aligned_cols=179 Identities=13% Similarity=0.063 Sum_probs=85.3
Q ss_pred CccccchhhHHHHHHHHHhCCCC------CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLR------ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFR 254 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (1024)
.+++|.+..+.++.+....-... +-.-.+-+.|+|++|+||||||+.++.. .. ...+.++.. .
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~--~~---~~~i~~~~~------~ 84 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS------D 84 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH------H
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hC---CCEEEeeHH------H
Confidence 35888877666655443221000 0011123899999999999999999973 22 223333321 1
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCC-----------CH---HHHHHhhcCCCCCC--CCc
Q 044195 255 VTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNE-----------NY---EYWSIFSRPFGAGA--PGS 318 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~-----------~~---~~~~~l~~~~~~~~--~gs 318 (1024)
+.... .......+...++..-...+.++++|++..- .. .....+...+..+. ...
T Consensus 85 ----~~~~~-----~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~ 155 (254)
T 1ixz_A 85 ----FVEMF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 155 (254)
T ss_dssp ----HHHSC-----TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCE
T ss_pred ----HHHHH-----hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCE
Confidence 11110 0001111222222222345789999998310 00 01122222222221 223
Q ss_pred EEEEEcCCchhhh-cc----CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044195 319 KIVVTTRNLRVTV-NM----GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLP 384 (1024)
Q Consensus 319 ~ilvTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 384 (1024)
-++.||..+.... .. .-...+.++..+.++-.+++...+.+. ....... ...|++.+.|.-
T Consensus 156 i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 156 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC-CCCcccC----HHHHHHHcCCCC
Confidence 4444565544321 11 123467888888888888887654221 1111111 234667777653
No 247
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.43 E-value=0.026 Score=63.71 Aligned_cols=175 Identities=13% Similarity=0.059 Sum_probs=90.4
Q ss_pred CccccchhhHHHHHHHHHh---CCCC---CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHH
Q 044195 181 AKVYGREKDKEAIVELLLR---DGLR---ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFR 254 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~---~~~~---~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 254 (1024)
.+++|.+..+.++.+.... ...- +-.-.+-|.|+|++|+|||+||++++.. .. ...+.++.+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~---~~~i~i~g~~~~~--- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGSDFVE--- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TT---CCEEEEEGGGGTS---
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hC---CCEEEEehhHHHH---
Confidence 4588988877666555432 1100 0011234899999999999999999973 22 2234444332110
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHHHHhC----CCceeEEeeccCCC-----------CH---HHHHHhhcCCCCC--
Q 044195 255 VTKSILKSITNDQSKDDDLNWVQEKLKKQLS----GKKFLLVLDDVWNE-----------NY---EYWSIFSRPFGAG-- 314 (1024)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~LlVlDd~~~~-----------~~---~~~~~l~~~~~~~-- 314 (1024)
. ........+...++ ..+.++++|++..- .. .....+...+..+
T Consensus 103 -----------~-----~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 103 -----------M-----FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp -----------S-----CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred -----------h-----hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 0 00111223333333 24579999999421 11 1122333222221
Q ss_pred CCCcEEEEEcCCchhhh-cc----CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044195 315 APGSKIVVTTRNLRVTV-NM----GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLP 384 (1024)
Q Consensus 315 ~~gs~ilvTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 384 (1024)
..+..|+.||..+.... .+ .-...+.+...+.++-.+++..++.+. ....... ...|++.+.|..
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSST----THHHHTTSCSCC
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHHH----HHHHHHhcCCCC
Confidence 23345555666554321 11 123467888888888888887764321 1111111 344777777765
No 248
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.42 E-value=0.0085 Score=64.26 Aligned_cols=84 Identities=23% Similarity=0.198 Sum_probs=55.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCC-----CCCcHHHHHHHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQS-----KDDDLNWVQEKLK 281 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 281 (1024)
...++.|+|++|+||||||.+++.. ....=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4479999999999999999999873 22222357788877776654 3344433221 2344555555555
Q ss_pred HHhC-CCceeEEeeccC
Q 044195 282 KQLS-GKKFLLVLDDVW 297 (1024)
Q Consensus 282 ~~l~-~~~~LlVlDd~~ 297 (1024)
..++ .+.-++|+|.+.
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 5553 566799999984
No 249
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.39 E-value=0.0099 Score=65.44 Aligned_cols=23 Identities=35% Similarity=0.325 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+.|+|++|+|||++|+.+++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999997
No 250
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.21 E-value=0.013 Score=60.70 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=53.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcChhhhcc--CCceEEEEecCCCCHHHHHHHHHHhccCCCC-----CCCcHHHH-HHHHH
Q 044195 210 VFSINGMGGVGKTTLAQLVYNDDRVQRR--FQIKAWTFVSEDFNVFRVTKSILKSITNDQS-----KDDDLNWV-QEKLK 281 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~-~~~l~ 281 (1024)
++-|+|++|+||||||.+++.. .... =..++||+....++.. .+++++.+.+ ...+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999998873 3333 2467899988887764 2556654432 12345554 33333
Q ss_pred HH--h-CCCceeEEeeccC
Q 044195 282 KQ--L-SGKKFLLVLDDVW 297 (1024)
Q Consensus 282 ~~--l-~~~~~LlVlDd~~ 297 (1024)
.. + +++.-+||+|-+.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 22 3 4567899999984
No 251
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.13 E-value=0.038 Score=57.71 Aligned_cols=180 Identities=13% Similarity=0.055 Sum_probs=87.4
Q ss_pred cCccccchhhHHHHHHHHHhCCCC------CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHH
Q 044195 180 EAKVYGREKDKEAIVELLLRDGLR------ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVF 253 (1024)
Q Consensus 180 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (1024)
-.+++|.+..+.++.+....-... +-.-.+-+.|+|++|+||||||+.++.. .. ...+.++..
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~--~~---~~~i~~~~~------ 107 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS------ 107 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH------
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH--cC---CCEEEecHH------
Confidence 346889887766665544321000 0001123899999999999999999973 22 233344321
Q ss_pred HHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCC-----------C---HHHHHHhhcCCCCCC--CC
Q 044195 254 RVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNE-----------N---YEYWSIFSRPFGAGA--PG 317 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~-----------~---~~~~~~l~~~~~~~~--~g 317 (1024)
.+ ..... ......+...++..-...+.++|+|++..- . ......+...+..+. ..
T Consensus 108 ~~----~~~~~-----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~ 178 (278)
T 1iy2_A 108 DF----VEMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 178 (278)
T ss_dssp HH----HHSTT-----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCC
T ss_pred HH----HHHHh-----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCC
Confidence 11 11100 001111222222322346789999998310 0 011122222222222 22
Q ss_pred cEEEEEcCCchhhh-cc----CCccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044195 318 SKIVVTTRNLRVTV-NM----GADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKCKGLP 384 (1024)
Q Consensus 318 s~ilvTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 384 (1024)
..++.||..+.... .. .-...+.++..+.++-.+++..++.+ ........ ...+++.+.|..
T Consensus 179 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~-~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG-KPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp EEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT-SCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc-CCCCcccC----HHHHHHHcCCCC
Confidence 33444555543321 11 12346788888888888888766422 11111111 234667777754
No 252
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.12 E-value=0.022 Score=59.14 Aligned_cols=126 Identities=16% Similarity=0.090 Sum_probs=64.8
Q ss_pred EEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHH-hCCCce
Q 044195 211 FSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQ-LSGKKF 289 (1024)
Q Consensus 211 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~ 289 (1024)
+.|+|++|+||||||+.++.. ... ..+++....-.+. ...........+.+. -...+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999972 221 2344443221110 000111111222222 234678
Q ss_pred eEEeeccCCCC-----------HHHHHHhhcCCCCC--CCCcEEEEEcCCchhhhc-c----CCccceecCCCChHhHHH
Q 044195 290 LLVLDDVWNEN-----------YEYWSIFSRPFGAG--APGSKIVVTTRNLRVTVN-M----GADQAYQLKELSNDDCLC 351 (1024)
Q Consensus 290 LlVlDd~~~~~-----------~~~~~~l~~~~~~~--~~gs~ilvTtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~ 351 (1024)
++++|++.... ......+...+..+ ....-++.+|..+.+... . .-...+.+...+.++..+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 99999984310 00112222222211 123445556665543221 1 123456788888888888
Q ss_pred HHHhhh
Q 044195 352 LLTQIS 357 (1024)
Q Consensus 352 lf~~~a 357 (1024)
+|....
T Consensus 186 il~~~~ 191 (274)
T 2x8a_A 186 ILKTIT 191 (274)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 887764
No 253
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.07 E-value=0.016 Score=62.59 Aligned_cols=82 Identities=20% Similarity=0.174 Sum_probs=54.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCC-----CCCcHHHHHHHHHH
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQS-----KDDDLNWVQEKLKK 282 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~~ 282 (1024)
..++.|+|.+|+||||||.+++.. ....-..++|++....++... ++.++.... ...+.+++...+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~~-----a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPVY-----ARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHHH-----HHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 458999999999999999998873 222234788999887766542 334433211 12345666666666
Q ss_pred HhC-CCceeEEeecc
Q 044195 283 QLS-GKKFLLVLDDV 296 (1024)
Q Consensus 283 ~l~-~~~~LlVlDd~ 296 (1024)
..+ ...-+||+|.+
T Consensus 147 l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSV 161 (366)
T ss_dssp HHTTTCCSEEEEECT
T ss_pred HHhcCCCCEEEEeCh
Confidence 554 45669999998
No 254
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.87 E-value=0.0048 Score=59.38 Aligned_cols=117 Identities=15% Similarity=0.017 Sum_probs=58.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecC---CCCHHHHHHHHHHhc---cCCC-CCC-------CcHH
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSE---DFNVFRVTKSILKSI---TNDQ-SKD-------DDLN 274 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~il~~l---~~~~-~~~-------~~~~ 274 (1024)
..|.|++..|.||||.|-..+- +...+=-.+.++..-. ......++..+.-.+ +... ... ....
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4677777777999999988876 3333322344443322 223333433331000 0000 001 1112
Q ss_pred HHHHHHHHHhCCCc-eeEEeeccCC---CCHHHHHHhhcCCCCCCCCcEEEEEcCCc
Q 044195 275 WVQEKLKKQLSGKK-FLLVLDDVWN---ENYEYWSIFSRPFGAGAPGSKIVVTTRNL 327 (1024)
Q Consensus 275 ~~~~~l~~~l~~~~-~LlVlDd~~~---~~~~~~~~l~~~~~~~~~gs~ilvTtR~~ 327 (1024)
.....+++.+.+.+ -|||||++-. -.....+.+...+........||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 23344555565544 4999999821 01111223333333333567899999985
No 255
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.85 E-value=0.023 Score=61.15 Aligned_cols=84 Identities=23% Similarity=0.155 Sum_probs=54.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCC-----CCCcHHHHHHHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQS-----KDDDLNWVQEKLK 281 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 281 (1024)
..+++.|+|++|+||||||.+++.. ....=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 3468999999999999999999863 22223467899888766653 2334432211 1234555555555
Q ss_pred HHhC-CCceeEEeeccC
Q 044195 282 KQLS-GKKFLLVLDDVW 297 (1024)
Q Consensus 282 ~~l~-~~~~LlVlDd~~ 297 (1024)
...+ .+.-+||+|.+.
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 4443 457799999984
No 256
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.78 E-value=0.03 Score=60.35 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=39.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhc----cCCceEEEEecCCCCHHHHHHHHHHhcc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQR----RFQIKAWTFVSEDFNVFRVTKSILKSIT 264 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~ 264 (1024)
...++.|+|++|+||||||.+++....... .-..++|++....++..++. .++..++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcC
Confidence 457999999999999999999886321211 22468899988877766554 3344443
No 257
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.75 E-value=0.041 Score=59.53 Aligned_cols=156 Identities=10% Similarity=-0.056 Sum_probs=96.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHH-HhCC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKK-QLSG 286 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~ 286 (1024)
.++..++|+.|.||++.|..+..... ...|+....+.+.... +..++...+.. -+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNT---------------------DWNAIFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTC---------------------CHHHHHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCC---------------------CHHHHHHHhcCcCCcc
Confidence 46899999999999999999887321 2234322112222222 33333333322 2345
Q ss_pred CceeEEeeccCC-CCHHHHHHhhcCCCCCCCCcEEEEEcCC-------chhhhcc-CCccceecCCCChHhHHHHHHhhh
Q 044195 287 KKFLLVLDDVWN-ENYEYWSIFSRPFGAGAPGSKIVVTTRN-------LRVTVNM-GADQAYQLKELSNDDCLCLLTQIS 357 (1024)
Q Consensus 287 ~~~LlVlDd~~~-~~~~~~~~l~~~~~~~~~gs~ilvTtR~-------~~~~~~~-~~~~~~~l~~L~~~ea~~lf~~~a 357 (1024)
++-++|+|+++. -+...++.+...+....+++.+|+++.. ..+...+ .....++..+++.++....+...+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 677889999866 4445667776666554567777776543 1222222 234678999999999988777765
Q ss_pred cCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 044195 358 LGTGDFNIHPSLKEVGEKIVMKCKGLPLAAKT 389 (1024)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 389 (1024)
...+- .-..+.+..|++.++|.+.++..
T Consensus 156 ~~~g~----~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 156 KQLNL----ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHTTC----EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHcCC----CCCHHHHHHHHHHhchHHHHHHH
Confidence 32211 11236778899999999887755
No 258
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.74 E-value=0.016 Score=59.16 Aligned_cols=90 Identities=12% Similarity=0.052 Sum_probs=51.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhc----cCCceEEEEecCCCCHHHHHHHHHHhccCCCC---------CCCcH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQR----RFQIKAWTFVSEDFNVFRVTKSILKSITNDQS---------KDDDL 273 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~~~~ 273 (1024)
...++.|+|++|+|||||+..++....... .-..++|++....+....+ ..++..++.... ...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 346999999999999999999886311111 1356888887765554433 233344432210 01122
Q ss_pred HH---HHHHHHHHhC-CCceeEEeeccC
Q 044195 274 NW---VQEKLKKQLS-GKKFLLVLDDVW 297 (1024)
Q Consensus 274 ~~---~~~~l~~~l~-~~~~LlVlDd~~ 297 (1024)
.. ....+.+.+. .+.-+||+|.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 22 2233444443 467788899873
No 259
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.66 E-value=0.026 Score=60.84 Aligned_cols=84 Identities=23% Similarity=0.154 Sum_probs=53.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCC-----CCCcHHHHHHHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQS-----KDDDLNWVQEKLK 281 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 281 (1024)
..+++.|+|.+|+||||||.+++.. ....=..++|++....++... +..++...+ ...+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 3468999999999999999998873 222234688999887776432 334432211 1123444444444
Q ss_pred HHh-CCCceeEEeeccC
Q 044195 282 KQL-SGKKFLLVLDDVW 297 (1024)
Q Consensus 282 ~~l-~~~~~LlVlDd~~ 297 (1024)
... ..+.-+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 443 3456699999983
No 260
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.60 E-value=0.026 Score=60.44 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=53.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhcc----CCceEEEEecCCCCHHHHHHHHHHhccCCCC---------CCCcH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRR----FQIKAWTFVSEDFNVFRVTKSILKSITNDQS---------KDDDL 273 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~~~~ 273 (1024)
...++.|+|++|+|||+||.+++........ -..++|++....++..++. +++..++.... ...+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 3469999999999999999998863211111 2467899888877766554 34444433210 11122
Q ss_pred H---HHHHHHHHHhC--CCceeEEeecc
Q 044195 274 N---WVQEKLKKQLS--GKKFLLVLDDV 296 (1024)
Q Consensus 274 ~---~~~~~l~~~l~--~~~~LlVlDd~ 296 (1024)
+ .+...+...++ .+.-+||+|.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 2 23334444443 45668888887
No 261
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.55 E-value=0.029 Score=58.91 Aligned_cols=87 Identities=11% Similarity=0.038 Sum_probs=47.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecC-CCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhC
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSE-DFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLS 285 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (1024)
..++++|+|++|+||||++..++........ ..+.++.... .....+.+....+..+.+.....+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 3469999999999999999999863221111 2344554432 2223334444444333322122233444444442 3
Q ss_pred CCceeEEeecc
Q 044195 286 GKKFLLVLDDV 296 (1024)
Q Consensus 286 ~~~~LlVlDd~ 296 (1024)
.+.-++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 44568889954
No 262
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.50 E-value=0.019 Score=61.50 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=53.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhc---------cC-----CceEEEEecCCCCHHHHHHHHHHhccCCCC----
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQR---------RF-----QIKAWTFVSEDFNVFRVTKSILKSITNDQS---- 268 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---- 268 (1024)
...++.|+|.+|+|||++|.+++....... .. ..++|++....++..++.+ ++..++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 447999999999999999999886321111 11 4678998888777665553 3444433210
Q ss_pred -----CCCcHH---HHHHHHHHHhC--CCceeEEeecc
Q 044195 269 -----KDDDLN---WVQEKLKKQLS--GKKFLLVLDDV 296 (1024)
Q Consensus 269 -----~~~~~~---~~~~~l~~~l~--~~~~LlVlDd~ 296 (1024)
...+.+ .+...+.+.++ .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 111222 23334444443 34568888887
No 263
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.47 E-value=0.015 Score=57.31 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=33.7
Q ss_pred chhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 186 REKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 186 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
|++.++.+.+.+.... .....+|+|.|+.|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5667778888887642 24567999999999999999999886
No 264
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.19 E-value=0.012 Score=62.64 Aligned_cols=85 Identities=14% Similarity=0.115 Sum_probs=47.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccC-C-ceEEEEecCCCCHHHHHHHHHHhcc-----CCCCCCCcHHH----
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF-Q-IKAWTFVSEDFNVFRVTKSILKSIT-----NDQSKDDDLNW---- 275 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~il~~l~-----~~~~~~~~~~~---- 275 (1024)
....++|+|++|+|||||++.+++. +.... + .++++-+++...... ++.+.+. ...+.......
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~--i~~~~~~v~~I~~lIGER~~Ev~---~~~~~~~~~vV~atadep~~~r~~~a~ 247 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQS--IAYNHPDCVLMVLLIDERPEEVT---EMQRLVKGEVVASTFDEPASRHVQVAE 247 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHH--HHHHCTTSEEEEEEESSCHHHHH---HHHTTCSSEEEEECTTSCHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHH--HhhcCCCeeEEEEEecCChHHHH---HHHHHhCeEEEEeCCCCCHHHHHHHHH
Confidence 4468999999999999999998872 22222 2 244666776543222 2223321 11111111111
Q ss_pred HHHHHHHHh--CCCceeEEeecc
Q 044195 276 VQEKLKKQL--SGKKFLLVLDDV 296 (1024)
Q Consensus 276 ~~~~l~~~l--~~~~~LlVlDd~ 296 (1024)
..-.+.+++ +++.+||++||+
T Consensus 248 ~alt~AEyfrd~G~dVLil~Dsl 270 (422)
T 3ice_A 248 MVIEKAKRLVEHKKDVIILLDSI 270 (422)
T ss_dssp HHHHHHHHHHHTSCEEEEEEECH
T ss_pred HHHHHHHHHHhcCCCEEEEEeCc
Confidence 111223333 689999999999
No 265
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.09 E-value=0.12 Score=52.12 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 044195 209 SVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
.+++|+|+.|+|||||++.++.-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999873
No 266
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.05 E-value=0.081 Score=55.59 Aligned_cols=88 Identities=17% Similarity=0.116 Sum_probs=48.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHH--HHHHHHHHhccCCC---CCCCcHHHH-HHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVF--RVTKSILKSITNDQ---SKDDDLNWV-QEKL 280 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~il~~l~~~~---~~~~~~~~~-~~~l 280 (1024)
...++.|+|++|+||||++..++.. ....-..+.++.. +.+... +.+...++..+.+. ....+...+ ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 4579999999999999999999873 3322223444443 333322 22333444333211 112233322 3345
Q ss_pred HHHhCCCceeEEeeccC
Q 044195 281 KKQLSGKKFLLVLDDVW 297 (1024)
Q Consensus 281 ~~~l~~~~~LlVlDd~~ 297 (1024)
...+....-++|+|-.-
T Consensus 180 ~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 55555666688999763
No 267
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.98 E-value=0.066 Score=54.10 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=27.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecC
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSE 248 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 248 (1024)
.+++|+|++|+|||||+..++... ...=..++|+....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~--~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG--LRDGDPCIYVTTEE 61 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH--HHHTCCEEEEESSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH--HHCCCeEEEEEccc
Confidence 589999999999999999998632 22223456665433
No 268
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.90 E-value=0.084 Score=62.84 Aligned_cols=97 Identities=22% Similarity=0.184 Sum_probs=56.6
Q ss_pred CccccchhhHHHHHHHHHhCCCC-------CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLR-------ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (1024)
.++.|-++.+++|.+.+..+... +-...+-|.++|++|+|||.+|+++++. ....| +.++ ..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~f-----~~v~----~~ 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANF-----ISIK----GP 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCEE-----EECC----HH
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCce-----EEec----cc
Confidence 45678888888777665433110 1223456889999999999999999983 33222 2222 11
Q ss_pred HHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccC
Q 044195 254 RVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVW 297 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~ 297 (1024)
+++....+ .....+...+...-+..+++|+||+++
T Consensus 546 ----~l~s~~vG-----ese~~vr~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 546 ----ELLTMWFG-----ESEANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp ----HHHTTTCS-----SCHHHHHHHHHHHHTTCSEEEECSCGG
T ss_pred ----hhhccccc-----hHHHHHHHHHHHHHHcCCceeechhhh
Confidence 12222111 122233333333345689999999984
No 269
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.83 E-value=0.075 Score=56.44 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=36.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHh
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKS 262 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 262 (1024)
...++.|.|.+|+||||+|..++.+...+. ..++|++.. .+..++...++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 346899999999999999999986432222 567777655 4556666666544
No 270
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.67 E-value=0.24 Score=54.51 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999998886
No 271
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.62 E-value=0.24 Score=49.66 Aligned_cols=23 Identities=26% Similarity=0.625 Sum_probs=21.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 044195 209 SVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
.+++|+|+.|+|||||.+.++.-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 272
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.56 E-value=0.092 Score=55.37 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=32.2
Q ss_pred cccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 183 VYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 183 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
++|-...+..+...+.... ......+|+|.|+.|+||||+|+.+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3444445555554454432 235677999999999999999999875
No 273
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.42 E-value=0.089 Score=53.00 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=30.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhh---c-cCCceEEEEecCCCC
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQ---R-RFQIKAWTFVSEDFN 251 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~---~-~f~~~~wv~~~~~~~ 251 (1024)
...+++|+|++|+|||||++.++...... . .-...+|+.......
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 44799999999999999999997521111 1 134577877655444
No 274
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.39 E-value=0.081 Score=57.86 Aligned_cols=57 Identities=16% Similarity=0.069 Sum_probs=36.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhh----ccCCceEEEEecCCCCHHHHHHHHHHhcc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQ----RRFQIKAWTFVSEDFNVFRVTKSILKSIT 264 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 264 (1024)
...++.|+|++|+|||||+..++-..... ..-..++|++....+....+ +.+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 34699999999999999999765311111 12345888887776655443 33555444
No 275
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.39 E-value=0.052 Score=48.88 Aligned_cols=51 Identities=22% Similarity=0.273 Sum_probs=32.3
Q ss_pred EEEeCCCCCcc--cCCccccCCCCCcEeeccCCCccccCcc-cccCCCCcEEecCCC
Q 044195 597 VFSLCGYCNII--DLPNEIGNLKHLRFLNLSRTNIQILPQS-INSLYNLHTVLLEDC 650 (1024)
Q Consensus 597 ~L~L~~~~~l~--~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~ 650 (1024)
+++.+++ .++ .+|..+. .+|++|+|++|.|+.+|.. +..+++|++|+|++|
T Consensus 12 ~v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSS-CCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCC-CCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4556665 565 6665442 3577777777777777654 455666777777665
No 276
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.35 E-value=0.085 Score=56.84 Aligned_cols=90 Identities=17% Similarity=0.164 Sum_probs=51.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccC----CceEEEEecCCCCHHHHHHHHHHhccCCC------------CCC
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF----QIKAWTFVSEDFNVFRVTKSILKSITNDQ------------SKD 270 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~il~~l~~~~------------~~~ 270 (1024)
...++.|+|++|+|||||+..++......... ..++|++....+...+ +..+++..+... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45799999999999999999998632111111 2348888766544333 233444332211 001
Q ss_pred CcHHHHHHHHHHHhC------CCceeEEeeccC
Q 044195 271 DDLNWVQEKLKKQLS------GKKFLLVLDDVW 297 (1024)
Q Consensus 271 ~~~~~~~~~l~~~l~------~~~~LlVlDd~~ 297 (1024)
....++...+...+. .++-+||+|.+-
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 112223333444443 467799999884
No 277
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.33 E-value=0.024 Score=61.12 Aligned_cols=110 Identities=12% Similarity=0.145 Sum_probs=60.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHH-HHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCC
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFR-VTKSILKSITNDQSKDDDLNWVQEKLKKQLSGK 287 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~-~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 287 (1024)
.+++|+|+.|+||||+.+.+... ........+ +.+.++..... -...++.+... ..+.......+...+...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~~~~~~~~v~q~~~----~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFVHESKKCLVNQREV----HRDTLGFSEALRSALRED 196 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSCCCCSSSEEEEEEB----TTTBSCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhhhhccccceeeeee----ccccCCHHHHHHHHhhhC
Confidence 59999999999999999998862 222222222 22222211100 00000000000 011122344788888899
Q ss_pred ceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchhh
Q 044195 288 KFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRVT 330 (1024)
Q Consensus 288 ~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~ 330 (1024)
+=+|++|+.. +.+.++.+.... ..|.-||+|+...+..
T Consensus 197 PdvillDEp~--d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 197 PDIILVGEMR--DLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred cCEEecCCCC--CHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 9999999995 345555544332 2466688888765543
No 278
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.32 E-value=0.035 Score=58.82 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=33.4
Q ss_pred ccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 184 YGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 184 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
|+-+...+++.+.+...- ..+....|.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 445566677777765433 234566799999999999999999987
No 279
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.31 E-value=0.026 Score=55.14 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+++|+|++|+||||+++.++.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 347899999999999999999987
No 280
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.23 E-value=0.036 Score=54.95 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
....+|+|+|+.|+|||||++.+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999986
No 281
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.22 E-value=0.021 Score=54.97 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 282
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.20 E-value=0.16 Score=51.78 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=28.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSE 248 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 248 (1024)
..++.|.|++|+||||||.+++.. ....=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 358999999999999999888763 222224677777554
No 283
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.18 E-value=0.0048 Score=59.82 Aligned_cols=22 Identities=27% Similarity=0.092 Sum_probs=19.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.++.|+|+.|+||||++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999977765
No 284
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.15 E-value=0.013 Score=71.01 Aligned_cols=157 Identities=17% Similarity=0.063 Sum_probs=80.3
Q ss_pred CccccchhhHHHHHHHHHhCCCC-------CCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHH
Q 044195 181 AKVYGREKDKEAIVELLLRDGLR-------ADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVF 253 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (1024)
.+++|.+..++.+.+.+...... +-...+.+.++|++|+|||+||++++. .....|- .+..+.-.
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~--~~~~~~i---~v~~~~l~--- 548 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANFI---SIKGPELL--- 548 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHH--HHTCCCC---CCCCSSST---
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHH--HhCCCEE---EEechHhh---
Confidence 45788888888887766432110 112345788999999999999999997 3333331 11111100
Q ss_pred HHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCceeEEeeccCCC--------------CHHHHHHhhcCCCCC--CCC
Q 044195 254 RVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKKFLLVLDDVWNE--------------NYEYWSIFSRPFGAG--APG 317 (1024)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDd~~~~--------------~~~~~~~l~~~~~~~--~~g 317 (1024)
... .......+...+...-...+.+++||++..- .......+...+... ..+
T Consensus 549 -----------~~~-~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~ 616 (806)
T 1ypw_A 549 -----------TMW-FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 616 (806)
T ss_dssp -----------TCC-TTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------C
T ss_pred -----------hhh-cCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCC
Confidence 000 0011112222222222335679999998420 011234444444322 233
Q ss_pred cEEEEEcCCchh-hhccC----CccceecCCCChHhHHHHHHhhh
Q 044195 318 SKIVVTTRNLRV-TVNMG----ADQAYQLKELSNDDCLCLLTQIS 357 (1024)
Q Consensus 318 s~ilvTtR~~~~-~~~~~----~~~~~~l~~L~~~ea~~lf~~~a 357 (1024)
..||.||...+. ...+- -...+.+...+.++..++++.+.
T Consensus 617 v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp CBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred eEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 445556654322 11111 12356677777788888887764
No 285
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.14 E-value=0.039 Score=57.66 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
....+|+|+|..|+||||||+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999886
No 286
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.11 E-value=0.12 Score=54.82 Aligned_cols=52 Identities=15% Similarity=0.027 Sum_probs=35.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSI 263 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 263 (1024)
..++.|.|.+|+||||+|..++.+... .=..++|++. ..+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 358999999999999999999874322 2234566654 445666666665543
No 287
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.99 E-value=0.053 Score=56.71 Aligned_cols=41 Identities=24% Similarity=0.380 Sum_probs=28.6
Q ss_pred hHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 189 DKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 189 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++++..+..... ......+|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444444443322 334568999999999999999999986
No 288
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.99 E-value=0.026 Score=54.21 Aligned_cols=20 Identities=45% Similarity=0.745 Sum_probs=18.7
Q ss_pred EEEEEEecCCCcHHHHHHHH
Q 044195 209 SVFSINGMGGVGKTTLAQLV 228 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~ 228 (1024)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 289
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.97 E-value=0.03 Score=54.05 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 290
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.95 E-value=0.026 Score=53.96 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+|+|.|++|+||||+|+.++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999986
No 291
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.94 E-value=0.034 Score=54.77 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+|+|+|++|+||||+|+.++.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 292
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.90 E-value=0.21 Score=54.86 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++.|+|.+|+||||++..++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 293
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.89 E-value=0.028 Score=55.27 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.++|+|+|++|+||||+|+.++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 294
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.87 E-value=0.23 Score=52.29 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=27.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCC-ceEEEEec
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQ-IKAWTFVS 247 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~ 247 (1024)
..+++|.|++|+|||||+..++... ...-. .++|++..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~--~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQW--GTAMGKKVGLAMLE 73 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH--HHTSCCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH--HHHcCCeEEEEeCc
Confidence 3599999999999999999998732 22222 45566543
No 295
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.81 E-value=0.037 Score=60.44 Aligned_cols=49 Identities=27% Similarity=0.299 Sum_probs=35.3
Q ss_pred ccccchhhHHHHHHHHHhC-------C--CCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 182 KVYGREKDKEAIVELLLRD-------G--LRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 182 ~~vGr~~~~~~l~~~L~~~-------~--~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.++|.+..++.+...+... . .......+.|.|+|++|+|||++|+++++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3688888888887777310 0 00112345789999999999999999997
No 296
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.79 E-value=0.1 Score=58.93 Aligned_cols=108 Identities=16% Similarity=0.143 Sum_probs=56.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHH----------
Q 044195 210 VFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEK---------- 279 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~---------- 279 (1024)
.+.|.|.+|+|||+++..+... ....-...+.+..........+ ++ .++. ...........
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~--l~~~~~~~il~~a~T~~Aa~~l-~~---~~~~---~~~T~h~~~~~~~~~~~~~~~ 117 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA--LISTGETGIILAAPTHAAKKIL-SK---LSGK---EASTIHSILKINPVTYEENVL 117 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH--HHHTTCCCEEEEESSHHHHHHH-HH---HHSS---CEEEHHHHHTEEEEECSSCEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHH--HHhcCCceEEEecCcHHHHHHH-Hh---hhcc---chhhHHHHhccCcccccccch
Confidence 8999999999999999998873 2222222233332222111111 11 1111 01111110000
Q ss_pred H--H-HHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchh
Q 044195 280 L--K-KQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRV 329 (1024)
Q Consensus 280 l--~-~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~ 329 (1024)
+ . .....+.-+||+|++...+...+..+...++ .+.++++.--..+.
T Consensus 118 ~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~~Ql 167 (459)
T 3upu_A 118 FEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDNKQI 167 (459)
T ss_dssp EEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECTTSC
T ss_pred hcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCHHHc
Confidence 0 0 0001134589999998777667777766654 46678887765543
No 297
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.70 E-value=0.043 Score=53.01 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 188 KDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 188 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.-+..+..++... +....+.|+|++|+||||+|.++++
T Consensus 43 ~f~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 43 TFLGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHH
Confidence 4466677777532 2335799999999999999999987
No 298
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.66 E-value=0.026 Score=53.99 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+|+|+|++|+||||+++.++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 299
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.66 E-value=0.12 Score=57.14 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=50.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCC-HHHHHHHHHHhcc--------CCCCCCCcHHH----
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFN-VFRVTKSILKSIT--------NDQSKDDDLNW---- 275 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~~~~~---- 275 (1024)
+.++|+|.+|+|||||+..+...... ..-+..+++.+++..+ ..+++.++...-. ....+..-...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 46899999999999999999873221 1224456677776553 3445544543210 11111111111
Q ss_pred HHHHHHHHh---CCCceeEEeecc
Q 044195 276 VQEKLKKQL---SGKKFLLVLDDV 296 (1024)
Q Consensus 276 ~~~~l~~~l---~~~~~LlVlDd~ 296 (1024)
..-.+.+++ +++.+|+++||+
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCcEEEEeccH
Confidence 111333443 589999999999
No 300
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.59 E-value=0.037 Score=53.40 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999986
No 301
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.59 E-value=0.056 Score=55.47 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 188 KDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 188 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+++...+..... ......+|.|.|++|+||||+|+.+..
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 13 HALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 334455555554432 334568999999999999999999986
No 302
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.59 E-value=0.19 Score=55.35 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..++|.++|++|+||||++..++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999987
No 303
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.55 E-value=0.034 Score=53.95 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+.|.|+|++|+||||+|+.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 304
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.52 E-value=0.27 Score=52.20 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=22.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
....+++|+|+.|+||||+++.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999987
No 305
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.52 E-value=0.044 Score=53.48 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999986
No 306
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.50 E-value=0.23 Score=52.56 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..++++|+|++|+||||++..++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 307
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.49 E-value=0.048 Score=52.25 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+|+|+|++|+||||+++.++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 347899999999999999999886
No 308
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.49 E-value=0.21 Score=52.28 Aligned_cols=86 Identities=12% Similarity=0.059 Sum_probs=45.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHH--HHHHHHHhccCCC---CCCCcHHHHHH-HHH
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFR--VTKSILKSITNDQ---SKDDDLNWVQE-KLK 281 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~--~~~~il~~l~~~~---~~~~~~~~~~~-~l~ 281 (1024)
.++++|+|.+|+||||++..++.. ....=..+.++.. +...... .+....+..+... ....+...+.. .+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v~l~~~-d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEecC-CcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 368999999999999999999873 2222223444443 3332221 2333333332211 11233434433 333
Q ss_pred HHhCCCceeEEeecc
Q 044195 282 KQLSGKKFLLVLDDV 296 (1024)
Q Consensus 282 ~~l~~~~~LlVlDd~ 296 (1024)
.......-++|+|--
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 333345568888976
No 309
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.44 E-value=0.22 Score=52.13 Aligned_cols=88 Identities=14% Similarity=0.065 Sum_probs=47.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCC-CCHHHHHHHHHHhccCC---CCCCCcHHHHHHHHHHH
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSED-FNVFRVTKSILKSITND---QSKDDDLNWVQEKLKKQ 283 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~---~~~~~~~~~~~~~l~~~ 283 (1024)
..+++++|.+|+||||++..++.. ....=..+.+++.... ....+.++......+.+ .....+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 579999999999999999999873 2222224455554322 22233333444433221 11123444444333344
Q ss_pred hC-CCceeEEeeccC
Q 044195 284 LS-GKKFLLVLDDVW 297 (1024)
Q Consensus 284 l~-~~~~LlVlDd~~ 297 (1024)
++ ..--++|+|-.-
T Consensus 176 ~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred HHhCCCCEEEEeCCC
Confidence 43 334488888763
No 310
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.34 E-value=0.04 Score=54.21 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+|+|.|+.|+||||+++.++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999986
No 311
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.26 E-value=0.047 Score=53.27 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+|.|.|++|+||||+|+.++.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 312
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.20 E-value=0.045 Score=54.20 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
..++++|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999863
No 313
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.14 E-value=0.053 Score=53.86 Aligned_cols=24 Identities=42% Similarity=0.347 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 447999999999999999999986
No 314
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.12 E-value=0.047 Score=52.07 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46999999999999999997553
No 315
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.09 E-value=0.22 Score=55.30 Aligned_cols=42 Identities=21% Similarity=0.238 Sum_probs=30.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCC
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFN 251 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 251 (1024)
...+++|+|..|+|||||++.++. ... ...+.+++...+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg--ll~-~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR--QFE-QQGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH--HHH-HTTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHH--Hhh-hcCCeEEEecCcccc
Confidence 467999999999999999999987 222 224566665455544
No 316
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.09 E-value=0.067 Score=52.94 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+|+|+|++|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 317
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.07 E-value=0.049 Score=53.83 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++|+|+.|+|||||++.++.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 318
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.04 E-value=0.059 Score=53.10 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=22.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
....+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999986
No 319
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.04 E-value=0.05 Score=55.77 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
++|.|.|++|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999986
No 320
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.03 E-value=0.17 Score=65.99 Aligned_cols=84 Identities=23% Similarity=0.154 Sum_probs=55.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCC-----CCCcHHHHHHHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQS-----KDDDLNWVQEKLK 281 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 281 (1024)
..++|.|+|++|+|||+||.+++.. ...+=..++|+++....+... ++.++.+.+ .....++....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 4579999999999999999999873 333334577888887777655 333332111 1123344455555
Q ss_pred HHh-CCCceeEEeeccC
Q 044195 282 KQL-SGKKFLLVLDDVW 297 (1024)
Q Consensus 282 ~~l-~~~~~LlVlDd~~ 297 (1024)
+.. +.+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 444 3577899999983
No 321
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.02 E-value=0.19 Score=55.48 Aligned_cols=89 Identities=16% Similarity=0.136 Sum_probs=57.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCC-HHHHHHHHHHhccCC---------------CCCC
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFN-VFRVTKSILKSITND---------------QSKD 270 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~---------------~~~~ 270 (1024)
...-++|.|.+|+|||+|+.++++.. .+.+-+..+++-+++... ..++.+++.+.-... .+..
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p 242 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 242 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSC
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCC
Confidence 44578999999999999999998731 123446788888887664 566677776542211 0111
Q ss_pred ----CcHHHHHHHHHHHhC---CCceeEEeecc
Q 044195 271 ----DDLNWVQEKLKKQLS---GKKFLLVLDDV 296 (1024)
Q Consensus 271 ----~~~~~~~~~l~~~l~---~~~~LlVlDd~ 296 (1024)
.......-.+.++++ ++.+|+++||+
T Consensus 243 ~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 243 PGARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp HHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 011122334456664 58999999998
No 322
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.02 E-value=0.11 Score=46.68 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=44.8
Q ss_pred cEeeccCCCcc--ccCcccccCCCCcEEecCCCccccccccc-cCCCCcccEEeccCCc
Q 044195 620 RFLNLSRTNIQ--ILPQSINSLYNLHTVLLEDCRRLKKLCKD-MGNLTKLHHLRNSNVH 675 (1024)
Q Consensus 620 ~~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 675 (1024)
.+++.++++++ .+|..+. .+|++|+|++| .+..+|.+ +..+++|+.|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 47888999998 8997653 57999999998 78888765 6789999999999987
No 323
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.01 E-value=0.092 Score=50.84 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
....+|.|.|++|+||||+++.++.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999999987
No 324
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.00 E-value=0.053 Score=52.76 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++|.|+.|+||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5889999999999999999974
No 325
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.99 E-value=0.041 Score=53.05 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.++|.|.|++|+||||+|+.++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46789999999999999999986
No 326
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.95 E-value=0.26 Score=54.47 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...++|.|+|.+|+||||++..++.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999987
No 327
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.92 E-value=0.62 Score=52.38 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=21.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...++|+|+|.+|+||||++..++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999986
No 328
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.88 E-value=0.053 Score=52.47 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
....|+|+|++|+||||+|+.++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 329
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.86 E-value=0.044 Score=54.05 Aligned_cols=23 Identities=17% Similarity=0.409 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+|+|.|++|+||||+|+.++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 330
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.85 E-value=0.055 Score=51.93 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 044195 210 VFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 331
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.85 E-value=0.11 Score=51.39 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+|+|.|++|+||||+|+.++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 332
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.84 E-value=0.042 Score=52.67 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.|.|.|++|+||||+|+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 333
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.83 E-value=0.068 Score=52.68 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=22.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
....+|+|.|++|+||||+|+.++.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999986
No 334
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.81 E-value=0.047 Score=53.94 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..++|+|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 335
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.77 E-value=0.065 Score=53.02 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...++|.|.|++|+||||.|+.++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999986
No 336
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.77 E-value=0.043 Score=53.23 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
++++|.|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 337
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.74 E-value=0.056 Score=52.66 Aligned_cols=22 Identities=41% Similarity=0.641 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+|.|.|++|+||||+|+.++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 338
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.74 E-value=0.06 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+|+|.|++|+||||+|+.++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 339
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.74 E-value=0.058 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 340
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.74 E-value=0.053 Score=51.54 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=20.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+|+|.|++|+||||+|+.++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 341
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.73 E-value=0.29 Score=53.84 Aligned_cols=99 Identities=18% Similarity=0.194 Sum_probs=59.9
Q ss_pred HHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCC-HHHHHHHHHHhccCC----
Q 044195 192 AIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFN-VFRVTKSILKSITND---- 266 (1024)
Q Consensus 192 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~---- 266 (1024)
+.++.|..- +...-++|.|.+|+|||+|+.++++.. .+.+-+..+++-+++... ..++++++.+.-...
T Consensus 142 r~ID~l~pi-----gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~ 215 (482)
T 2ck3_D 142 KVVDLLAPY-----AKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDA 215 (482)
T ss_dssp HHHHHHSCE-----ETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSS
T ss_pred EEEeccccc-----ccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccC
Confidence 455555432 344678999999999999999998731 123345677888887654 456666666542211
Q ss_pred --C-------CCCCcHH-----HHHHHHHHHh---CCCceeEEeecc
Q 044195 267 --Q-------SKDDDLN-----WVQEKLKKQL---SGKKFLLVLDDV 296 (1024)
Q Consensus 267 --~-------~~~~~~~-----~~~~~l~~~l---~~~~~LlVlDd~ 296 (1024)
. ....... ...-.+.+++ +++.+||++||+
T Consensus 216 ~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 216 TSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred CceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 0 0111111 1122334444 578999999998
No 342
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.70 E-value=0.063 Score=53.09 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 343
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.64 E-value=0.062 Score=52.58 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+|+|.|++|+||||+|+.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 344
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.64 E-value=0.14 Score=50.83 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+|+|.|++|+||||+|+.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 345
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.58 E-value=0.072 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...|+|.|++|+||||+|+.++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 346
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.49 E-value=0.065 Score=52.86 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
+|+|+|+.|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999885
No 347
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.49 E-value=0.049 Score=59.16 Aligned_cols=44 Identities=23% Similarity=0.297 Sum_probs=31.9
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..++|.+..++.+....... ...-|.|+|++|+|||++|+.+++
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~------~~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP------GIGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG------GGCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCC------CCceEEEECCCCccHHHHHHHHHH
Confidence 34899888666554444322 122389999999999999999987
No 348
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.47 E-value=0.071 Score=51.69 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999986
No 349
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.46 E-value=0.07 Score=54.98 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+|.|.|++|+||||+|+.++.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 350
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.45 E-value=0.072 Score=52.41 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+|.|.|++|+||||+|+.++.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999986
No 351
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.45 E-value=0.088 Score=51.30 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+|+|.|++|+||||+|+.++.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999986
No 352
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.44 E-value=0.45 Score=53.18 Aligned_cols=53 Identities=15% Similarity=0.041 Sum_probs=36.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHh
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKS 262 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 262 (1024)
...++.|.|.+|+||||+|..++.+.... .=..++|++.. .+..++...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHH
Confidence 34689999999999999999998743221 12357777654 4455666666543
No 353
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.43 E-value=0.15 Score=49.73 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 354
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.42 E-value=0.048 Score=52.80 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+|.|.|++|+||||+|+.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 355
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.41 E-value=0.039 Score=53.15 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
|.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999875
No 356
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.40 E-value=0.066 Score=50.41 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 357
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.38 E-value=0.17 Score=58.41 Aligned_cols=107 Identities=12% Similarity=0.119 Sum_probs=57.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHh----
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQL---- 284 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l---- 284 (1024)
+++.|.|.+|+||||++..+.... ... ...+.+.+........+. +.++. ...+...+.......+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l--~~~-g~~Vl~~ApT~~Aa~~L~----e~~~~---~a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLA--ESL-GLEVGLCAPTGKAARRLG----EVTGR---TASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH--HHT-TCCEEEEESSHHHHHHHH----HHHTS---CEEEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH--Hhc-CCeEEEecCcHHHHHHhH----hhhcc---cHHHHHHHHcCCcchhhhhh
Confidence 589999999999999999988632 221 234444433322222221 11111 1111111100000000
Q ss_pred --CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCch
Q 044195 285 --SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLR 328 (1024)
Q Consensus 285 --~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~ 328 (1024)
..+.-+||+|++..-+...+..+...++ .+.++|+.--..+
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~~Q 317 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDTDQ 317 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECTTS
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEecccc
Confidence 0123499999997777777777777666 4667877665443
No 358
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.36 E-value=0.077 Score=51.02 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+|+|.|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 359
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.31 E-value=0.067 Score=53.84 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+|+|+|++|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999986
No 360
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.28 E-value=0.055 Score=53.10 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999976
No 361
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.26 E-value=0.069 Score=52.64 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.|+|.|+.|+||||+|+.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999986
No 362
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.21 E-value=0.18 Score=49.11 Aligned_cols=21 Identities=38% Similarity=0.732 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
+|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 363
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.21 E-value=0.069 Score=52.36 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+|+|.|++|+||||+|+.++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 364
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.19 E-value=0.081 Score=55.87 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
....+|+|.|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3567999999999999999999986
No 365
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.19 E-value=0.37 Score=54.10 Aligned_cols=51 Identities=14% Similarity=0.081 Sum_probs=34.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSIL 260 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (1024)
...++.|.|.+|+||||+|..++.+.... .=..++|++... +..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 34589999999999999999998743221 112577776543 3455555544
No 366
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.17 E-value=0.057 Score=51.57 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
++|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 367
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.16 E-value=0.08 Score=54.27 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=21.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
....+|+|.|++|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3557999999999999999999886
No 368
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.12 E-value=0.093 Score=49.06 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+++|.|+.|.|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999986
No 369
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.11 E-value=0.1 Score=57.57 Aligned_cols=50 Identities=26% Similarity=0.309 Sum_probs=35.2
Q ss_pred CccccchhhHHHHHHHHHhC--------CCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 181 AKVYGREKDKEAIVELLLRD--------GLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..++|-+..++.+...+... ........+-|.++|++|+|||++|++++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 34788888888776666331 000011345689999999999999999987
No 370
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.04 E-value=0.074 Score=54.30 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+|+|.|++|+||||+++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 371
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.00 E-value=0.49 Score=54.02 Aligned_cols=54 Identities=11% Similarity=0.030 Sum_probs=36.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSI 263 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 263 (1024)
...++.|.|.+|+||||+|.+++.+...+ +=..++|++... +..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 34689999999999999999998733221 123567776544 4566666665443
No 372
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.97 E-value=0.079 Score=52.41 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36999999999999999999986
No 373
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.97 E-value=0.09 Score=53.59 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+|+|.|+.|+|||||++.++.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999999876
No 374
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.86 E-value=0.088 Score=55.33 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+++|+|++|+||||++..++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456999999999999999999986
No 375
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.86 E-value=0.084 Score=50.07 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 376
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.84 E-value=0.093 Score=50.94 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.-.+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999886
No 377
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.83 E-value=0.38 Score=48.92 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=31.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHH
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSI 259 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (1024)
..++.|.|.+|+|||++|.+++.+. ....-..++|++... +..++.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC--CHHHHHHHH
Confidence 4589999999999999999977532 222234566665543 344444443
No 378
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.83 E-value=0.1 Score=54.35 Aligned_cols=24 Identities=33% Similarity=0.675 Sum_probs=21.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHh
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVY 229 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~ 229 (1024)
+...+|+|.|++|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346799999999999999999987
No 379
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.80 E-value=0.094 Score=55.76 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=33.3
Q ss_pred HHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccC-Cc-eEEEEecCC
Q 044195 192 AIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRF-QI-KAWTFVSED 249 (1024)
Q Consensus 192 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~-~~wv~~~~~ 249 (1024)
++++.+..- +....++|+|.+|+|||+|+.++++. +.... +. ++++-+++.
T Consensus 164 raID~l~Pi-----grGQR~lIfg~~g~GKT~Ll~~Ia~~--i~~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPI-----GKGQRGMIVAPPKAGKTTILKEIANG--IAENHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHSCC-----BTTCEEEEEECTTCCHHHHHHHHHHH--HHHHCTTSEEEEEECSCC
T ss_pred hhhhhcccc-----cCCceEEEecCCCCChhHHHHHHHHH--HhhcCCCeEEEEEEeccC
Confidence 556666432 34457899999999999999999873 22222 22 345666554
No 380
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.79 E-value=0.056 Score=52.22 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=16.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+|.|.|++|+||||+|+.++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
No 381
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.75 E-value=0.085 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...|.|.|++|+||||+|+.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 382
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.72 E-value=0.089 Score=52.22 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+|+|.|++|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 383
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.72 E-value=0.15 Score=51.78 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
....|+|.|++|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 384
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.71 E-value=0.073 Score=53.12 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999986
No 385
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.68 E-value=0.096 Score=55.31 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=28.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEec
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVS 247 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 247 (1024)
...+||+|+|-|||||||.+..++. .....=..+.-|++.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecC
Confidence 3568999999999999999987775 222222345566665
No 386
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.61 E-value=0.092 Score=52.26 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+++|+|+.|+|||||++.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346999999999999999999886
No 387
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.51 E-value=0.21 Score=52.77 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
....+|+|+|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999886
No 388
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.48 E-value=0.39 Score=53.11 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
....+|.|+|++|+||||+|+.++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999986
No 389
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.45 E-value=0.095 Score=53.65 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+|+|+|+.|+||||+++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999985
No 390
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.42 E-value=0.19 Score=50.36 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 044195 188 KDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 188 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
+..+.+...+.. .....|+|+|.+|+|||||+..+...
T Consensus 24 ~~a~~~r~~~~~------~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 24 RLADKNRKLLNK------HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHH------TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh------CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 334455555432 24578999999999999999999863
No 391
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.36 E-value=0.098 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...|.|.|++|+||||+|+.++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 392
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.36 E-value=0.35 Score=63.08 Aligned_cols=84 Identities=23% Similarity=0.153 Sum_probs=57.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCC-----CCCcHHHHHHHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQS-----KDDDLNWVQEKLK 281 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 281 (1024)
...++.|+|++|+||||||.+++... ...=..++|++.....+... ++.++.+.+ ...+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 44699999999999999999998733 33334688998887776542 444544321 2345566666665
Q ss_pred HHh-CCCceeEEeeccC
Q 044195 282 KQL-SGKKFLLVLDDVW 297 (1024)
Q Consensus 282 ~~l-~~~~~LlVlDd~~ 297 (1024)
... +.+.-+||+|-+.
T Consensus 455 ~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCcEEEECCHH
Confidence 544 3567799999984
No 393
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.24 E-value=0.19 Score=48.52 Aligned_cols=37 Identities=27% Similarity=0.268 Sum_probs=16.1
Q ss_pred cCCCCCcEeeccCCCcc-----ccCcccccCCCCcEEecCCC
Q 044195 614 GNLKHLRFLNLSRTNIQ-----ILPQSINSLYNLHTVLLEDC 650 (1024)
Q Consensus 614 ~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~ 650 (1024)
..-..|+.|+|++|.|. .+-..+..-+.|++|+|++|
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 33344555555555443 12222233344555555554
No 394
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.06 E-value=0.13 Score=51.01 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+|.|.|+.|+||||+|+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999987
No 395
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.03 E-value=0.11 Score=51.67 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 396
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.03 E-value=0.07 Score=53.08 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 397
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.00 E-value=0.58 Score=51.78 Aligned_cols=86 Identities=19% Similarity=0.230 Sum_probs=51.8
Q ss_pred CeEEEEEEecCCCcHHHHH-HHHhcChhhhccCCc-eEEEEecCCCC-HHHHHHHHHHhcc--------CCCCCCCcHHH
Q 044195 207 GFSVFSINGMGGVGKTTLA-QLVYNDDRVQRRFQI-KAWTFVSEDFN-VFRVTKSILKSIT--------NDQSKDDDLNW 275 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~~~~~ 275 (1024)
....++|.|.+|+|||+|| ..+++.. .-+. .+++-+++..+ ..++.+.+.+.-. ...+.......
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 4457899999999999996 4677632 2443 46777887654 4556666654211 11112111111
Q ss_pred ----HHHHHHHHh--CCCceeEEeecc
Q 044195 276 ----VQEKLKKQL--SGKKFLLVLDDV 296 (1024)
Q Consensus 276 ----~~~~l~~~l--~~~~~LlVlDd~ 296 (1024)
....+.+++ +++.+||++||+
T Consensus 250 ~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 122344444 579999999999
No 398
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.98 E-value=0.37 Score=51.34 Aligned_cols=105 Identities=14% Similarity=0.027 Sum_probs=55.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHhCCCc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQLSGKK 288 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 288 (1024)
.+++|+|+.|+|||||++.+..-. ..-...+.+.-......... + ..++.-.. ........+...+..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~---~~~~g~i~i~~~~e~~~~~~-~---~~i~~~~g---gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI---PKEERIISIEDTEEIVFKHH-K---NYTQLFFG---GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS---CTTSCEEEEESSCCCCCSSC-S---SEEEEECB---TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---cCCCcEEEECCeeccccccc-h---hEEEEEeC---CChhHHHHHHHHhhhCC
Confidence 489999999999999999998732 11234555442211110000 0 00000000 11223445677788888
Q ss_pred eeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCch
Q 044195 289 FLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLR 328 (1024)
Q Consensus 289 ~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~ 328 (1024)
-++++|+..+ .+.++.+.. +..+ +.-+|+||....
T Consensus 242 ~ilildE~~~--~e~~~~l~~-~~~g--~~tvi~t~H~~~ 276 (330)
T 2pt7_A 242 DRIILGELRS--SEAYDFYNV-LCSG--HKGTLTTLHAGS 276 (330)
T ss_dssp SEEEECCCCS--THHHHHHHH-HHTT--CCCEEEEEECSS
T ss_pred CEEEEcCCCh--HHHHHHHHH-HhcC--CCEEEEEEcccH
Confidence 9999999954 344554433 2222 222566665433
No 399
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.97 E-value=0.14 Score=51.14 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999874
No 400
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.97 E-value=0.1 Score=52.24 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...|.|.|++|+||||+|+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 401
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.94 E-value=0.12 Score=50.98 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 402
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.92 E-value=0.079 Score=50.27 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
++++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 403
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.90 E-value=0.35 Score=62.23 Aligned_cols=85 Identities=22% Similarity=0.150 Sum_probs=57.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCC-----CCCcHHHHHHHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQS-----KDDDLNWVQEKLK 281 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 281 (1024)
..+++.|+|++|+||||||.+++... ...=..++|++.....+... ++.++.+.+ ...+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~--~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 44699999999999999999998743 33335788998888777542 444443221 1234555555555
Q ss_pred HHh-CCCceeEEeeccCC
Q 044195 282 KQL-SGKKFLLVLDDVWN 298 (1024)
Q Consensus 282 ~~l-~~~~~LlVlDd~~~ 298 (1024)
... +.+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 544 35677999999843
No 404
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.88 E-value=0.2 Score=49.91 Aligned_cols=39 Identities=28% Similarity=0.257 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcC
Q 044195 187 EKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 187 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
++..+++.+.+.. ...++|+|+|.+|+|||||+..+...
T Consensus 15 ~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 15 KRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4455555555532 24589999999999999999998863
No 405
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.87 E-value=0.63 Score=54.09 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+++|+|+.|.|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999975
No 406
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.86 E-value=0.12 Score=51.48 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 407
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.83 E-value=0.15 Score=59.79 Aligned_cols=42 Identities=26% Similarity=0.312 Sum_probs=35.5
Q ss_pred CccccchhhHHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 181 AKVYGREKDKEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 181 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..++|.+..++.+...+... ..+.|+|++|+||||||+.++.
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhc
Confidence 46899988888887777533 4799999999999999999987
No 408
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.81 E-value=0.59 Score=51.21 Aligned_cols=112 Identities=13% Similarity=-0.004 Sum_probs=57.5
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHh
Q 044195 205 DDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQSKDDDLNWVQEKLKKQL 284 (1024)
Q Consensus 205 ~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 284 (1024)
....++..|.|.+|.||||+..+.++. ...+.+ ........++.+.+ ...+...............+.+..
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~~-------~~~lVl-TpT~~aa~~l~~kl-~~~~~~~~~~~~V~T~dsfL~~~~ 228 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVNF-------EEDLIL-VPGRQAAEMIRRRA-NASGIIVATKDNVRTVDSFLMNYG 228 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCCT-------TTCEEE-ESCHHHHHHHHHHH-TTTSCCCCCTTTEEEHHHHHHTTT
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhcc-------CCeEEE-eCCHHHHHHHHHHh-hhcCccccccceEEEeHHhhcCCC
Confidence 457789999999999999999998862 122222 22222222332222 211111111111111122222211
Q ss_pred CCC---ceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchh
Q 044195 285 SGK---KFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRV 329 (1024)
Q Consensus 285 ~~~---~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~ 329 (1024)
..+ --++|+|++.--....+..+....+ ..++|+.--..+.
T Consensus 229 ~~~~~~~d~liiDE~sm~~~~~l~~l~~~~~----~~~vilvGD~~Ql 272 (446)
T 3vkw_A 229 KGARCQFKRLFIDEGLMLHTGCVNFLVEMSL----CDIAYVYGDTQQI 272 (446)
T ss_dssp SSCCCCCSEEEEETGGGSCHHHHHHHHHHTT----CSEEEEEECTTSC
T ss_pred CCCCCcCCEEEEeCcccCCHHHHHHHHHhCC----CCEEEEecCcccc
Confidence 111 3489999997666556665544332 2577777655444
No 409
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.79 E-value=0.11 Score=51.89 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..|.|.|++|+||||+|+.++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 410
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.74 E-value=0.23 Score=49.77 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
....|+|.|++|+||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 447899999999999999999987
No 411
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.72 E-value=0.15 Score=53.71 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..++|.|+|+.|+||||||..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999997
No 412
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.69 E-value=0.42 Score=46.50 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=31.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 210 VFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
.|+|-|.-|+||||.++.++. .....-..+++..-.......+.++.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHhh
Confidence 377889999999999999987 44444334444443333344455555543
No 413
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.67 E-value=0.11 Score=50.25 Aligned_cols=22 Identities=36% Similarity=0.372 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 044195 210 VFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998873
No 414
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.64 E-value=0.3 Score=53.40 Aligned_cols=86 Identities=10% Similarity=0.082 Sum_probs=51.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCC----ceEEEEecCCCC-HHHHHHHHHHhcc--------CCCCCCCcHH-
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQ----IKAWTFVSEDFN-VFRVTKSILKSIT--------NDQSKDDDLN- 274 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~----~~~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~~~~- 274 (1024)
.-++|.|.+|+|||+|+.++++.. ..+-+ ..+++-+++..+ ..++++++.+.-. ...+...-..
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~--~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQA--TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHC--BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHH--HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 457899999999999999998732 22223 566777776543 4556666544311 1111111111
Q ss_pred ---HHHHHHHHHh---CCCceeEEeecc
Q 044195 275 ---WVQEKLKKQL---SGKKFLLVLDDV 296 (1024)
Q Consensus 275 ---~~~~~l~~~l---~~~~~LlVlDd~ 296 (1024)
...-.+.+++ +++.+|+++||+
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1222345555 378999999999
No 415
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.64 E-value=0.13 Score=54.28 Aligned_cols=22 Identities=32% Similarity=0.274 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
++|+|.|+.|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 6899999999999999999986
No 416
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.55 E-value=0.1 Score=52.94 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+|+|+|+.|+||||+++.++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 417
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.51 E-value=0.15 Score=53.55 Aligned_cols=24 Identities=33% Similarity=0.309 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+++|+|+.|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 418
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.45 E-value=0.14 Score=51.18 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+|+|.|++|+||||+|+.++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 419
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.45 E-value=0.21 Score=51.22 Aligned_cols=109 Identities=14% Similarity=0.161 Sum_probs=57.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCC-CCHHHHHHHHHH--hccCCCCCCCcHHHHHHHHHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSED-FNVFRVTKSILK--SITNDQSKDDDLNWVQEKLKKQ 283 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~--~l~~~~~~~~~~~~~~~~l~~~ 283 (1024)
...+++|+|+.|+|||||++.+.. .....+.+.+++.-..- +-.... ..++. .++. .. ..+...+.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl---~~---~~l~~~la~a 94 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DT---KSFADALRAA 94 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TB---SCHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC---CH---HHHHHHHHHH
Confidence 346999999999999999999886 22222234444322110 000000 00000 0000 01 1234556666
Q ss_pred hCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchh
Q 044195 284 LSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRV 329 (1024)
Q Consensus 284 l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~ 329 (1024)
+..++-+|++|+.. +.+....+.... ..|.-|++||.+...
T Consensus 95 L~~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 95 LREDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred HhhCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 66678899999995 233333322221 246678888876543
No 420
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=90.44 E-value=0.62 Score=52.18 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=39.7
Q ss_pred HHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCC-HHHHHHH
Q 044195 192 AIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFN-VFRVTKS 258 (1024)
Q Consensus 192 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~ 258 (1024)
++++.|..- .....++|.|..|+|||+|+.++++. .+-+..+++-+++..+ ..+++++
T Consensus 221 rvID~l~Pi-----grGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPV-----TKGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCC-----BTTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCc-----cCCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 455566433 34567899999999999999999872 2335678888887643 3444444
No 421
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.36 E-value=0.14 Score=51.16 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++|+|+.|+|||||++.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 422
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.34 E-value=0.27 Score=47.41 Aligned_cols=110 Identities=16% Similarity=0.146 Sum_probs=60.1
Q ss_pred cCCCCceEEecCCCCCCCCCchhhh----hhhhhCCCCceEEEEeCCCCCccc-----CCccccCCCCCcEeeccCCCcc
Q 044195 560 RGVQQLRTFLPMKLSDYGGDYLAWS----VLQLLLDLPRLRVFSLCGYCNIID-----LPNEIGNLKHLRFLNLSRTNIQ 630 (1024)
Q Consensus 560 ~~~~~Lr~L~l~~~~~~~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~l~~-----lp~~l~~l~~L~~L~L~~~~i~ 630 (1024)
.+-+.|+.|.+.++.. +... ..+.+..-..|+.|+|++| .+.+ +-..+..-+.|++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~-----igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKR-----VSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCS-----SCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCC-----CCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3456677777765411 2222 2344466677888888877 4543 2233444567888888888776
Q ss_pred -----ccCcccccCCCCcEEecCCCcc--cc-----ccccccCCCCcccEEeccCCc
Q 044195 631 -----ILPQSINSLYNLHTVLLEDCRR--LK-----KLCKDMGNLTKLHHLRNSNVH 675 (1024)
Q Consensus 631 -----~lp~~i~~L~~L~~L~l~~~~~--l~-----~lp~~i~~L~~L~~L~l~~~~ 675 (1024)
.+-..+..-..|+.|+|++|.. +. .+...+..-+.|+.|+++.+.
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 2333344445577777765421 11 122223344566666665543
No 423
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.33 E-value=0.14 Score=51.78 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++|+|+.|+|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999986
No 424
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.32 E-value=0.14 Score=52.36 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+++|+|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 36999999999999999999884
No 425
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.28 E-value=0.096 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=16.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHh-c
Q 044195 208 FSVFSINGMGGVGKTTLAQLVY-N 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~-~ 230 (1024)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999998 5
No 426
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.26 E-value=0.18 Score=48.99 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999999864
No 427
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.26 E-value=0.14 Score=51.67 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++|+|+.|+|||||++.++.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999986
No 428
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.25 E-value=0.15 Score=50.41 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
+|+|.|+.|+||||+|+.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999986
No 429
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.25 E-value=0.17 Score=52.62 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.++|.|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999986
No 430
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.17 E-value=0.42 Score=52.84 Aligned_cols=86 Identities=22% Similarity=0.210 Sum_probs=51.4
Q ss_pred CeEEEEEEecCCCcHHHHH-HHHhcChhhhccCC-ceEEEEecCCCC-HHHHHHHHHHhccC--------CCCCCCcHHH
Q 044195 207 GFSVFSINGMGGVGKTTLA-QLVYNDDRVQRRFQ-IKAWTFVSEDFN-VFRVTKSILKSITN--------DQSKDDDLNW 275 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~il~~l~~--------~~~~~~~~~~ 275 (1024)
...-++|.|.+|+|||+|| ..+++. . .-+ ..+++-+++..+ ..++.+.+.+.-.. ..+.......
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQ--K--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGG--G--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHh--h--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 4457899999999999996 467662 1 344 346777887654 45556666542211 1111111111
Q ss_pred ----HHHHHHHHh--CCCceeEEeecc
Q 044195 276 ----VQEKLKKQL--SGKKFLLVLDDV 296 (1024)
Q Consensus 276 ----~~~~l~~~l--~~~~~LlVlDd~ 296 (1024)
....+.+++ +++.+|+++||+
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 112344444 579999999998
No 431
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.11 E-value=0.16 Score=53.34 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.++|.|+|+.|+||||||..++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 432
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.07 E-value=0.46 Score=52.96 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=40.9
Q ss_pred HHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCH-HHHHHHH
Q 044195 192 AIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNV-FRVTKSI 259 (1024)
Q Consensus 192 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i 259 (1024)
++++.|..- +....++|.|..|+|||+|+.++++. .+-+..+++-+++..+. .++++++
T Consensus 216 rvID~l~Pi-----gkGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQ-----AKGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCE-----ETTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCc-----ccCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 455555432 34467899999999999999998762 23356788888877654 4555543
No 433
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.02 E-value=0.16 Score=48.32 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..++++|+|+.|+|||||+..+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 434
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.00 E-value=0.33 Score=47.82 Aligned_cols=106 Identities=14% Similarity=0.172 Sum_probs=55.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCC----------CCCcHHHHHH
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQS----------KDDDLNWVQE 278 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----------~~~~~~~~~~ 278 (1024)
-.|.+.|.||+||||+|..++... ....+ .+.++.+....+.... .++..+...+. ...+....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l-~~~G~-~V~v~d~D~q~~~~~~--al~~gl~~~~~~~~~~~~~~~~e~~l~~~-- 80 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ-LRQGV-RVMAGVVETHGRAETE--ALLNGLPQQPLLRTEYRGMTLEEMDLDAL-- 80 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH-HHTTC-CEEEEECCCTTCHHHH--HHHTTSCBCCCEEEEETTEEEEECCHHHH--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH-HHCCC-CEEEEEeCCCCChhHH--HHhcCccccCcceeecCCcccccccHHHH--
Confidence 347889999999999998888732 12223 3445555443333221 22333222110 01222221
Q ss_pred HHHHHhCCCceeEEeeccCCC------CHHHHHHhhcCCCCCCCCcEEEEEcCCch
Q 044195 279 KLKKQLSGKKFLLVLDDVWNE------NYEYWSIFSRPFGAGAPGSKIVVTTRNLR 328 (1024)
Q Consensus 279 ~l~~~l~~~~~LlVlDd~~~~------~~~~~~~l~~~~~~~~~gs~ilvTtR~~~ 328 (1024)
+..++=++|+|++-.. ....|.++...++ .|..|++|+.-++
T Consensus 81 -----L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlqh 128 (228)
T 2r8r_A 81 -----LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQH 128 (228)
T ss_dssp -----HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGGG
T ss_pred -----HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEccccc
Confidence 2235679999987321 1224555544333 4556888876543
No 435
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.97 E-value=0.16 Score=48.73 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
+.|.|.|+.|+||||||.+++.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999999999987
No 436
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.88 E-value=0.48 Score=46.70 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...|.|.|+.|+||||+++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 437
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.84 E-value=0.17 Score=50.22 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.|.|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 438
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.84 E-value=0.17 Score=49.69 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
+|.|.|++|+||+|.|+.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 439
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.83 E-value=0.21 Score=51.84 Aligned_cols=24 Identities=25% Similarity=0.124 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..++|.|.|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999986
No 440
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.82 E-value=0.48 Score=51.17 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 190 KEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 190 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+...+... .+...+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 34445555332 24668999999999999999999876
No 441
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.80 E-value=0.24 Score=50.90 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++|+|+.|+|||||++.++.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999987
No 442
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=89.74 E-value=0.13 Score=49.74 Aligned_cols=109 Identities=11% Similarity=0.088 Sum_probs=54.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCC--CCCcHHHHHHHHHHHhC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQS--KDDDLNWVQEKLKKQLS 285 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~ 285 (1024)
.++..++|+.|.||||.+...++... ...+...++-..-.. ..-...+...++.... ...+.. .+.+.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k~~~d~---r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~~ 79 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFKPEIDN---RYSKEDVVSHMGEKEQAVAIKNSR----EILKYFE 79 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC----------CEEECTTSCEEECEEESSST----HHHHHCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEeccCc---cchHHHHHhhcCCceeeEeeCCHH----HHHHHHh
Confidence 47999999999999999988887332 222333333211111 0001112222221100 001111 2333444
Q ss_pred CCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCc
Q 044195 286 GKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNL 327 (1024)
Q Consensus 286 ~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~ 327 (1024)
++--+|++|.+..-+.+..+.+....+ .|..||+|.++.
T Consensus 80 ~~~dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 80 EDTEVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLDM 118 (191)
T ss_dssp TTCSEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECSB
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEeccc
Confidence 444599999985543344444433222 367899998864
No 443
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.67 E-value=0.17 Score=50.58 Aligned_cols=21 Identities=38% Similarity=0.415 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.|.|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 444
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=89.63 E-value=0.26 Score=60.73 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=20.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHh
Q 044195 208 FSVFSINGMGGVGKTTLAQLVY 229 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~ 229 (1024)
..+++|+|+.|.||||+.+.+.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4799999999999999999983
No 445
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.60 E-value=0.34 Score=51.24 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=29.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCC
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSED 249 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 249 (1024)
...++|+|+|-||+||||+|..++.. ....=..++-|+....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCC
Confidence 45689999999999999999998873 3222225666776543
No 446
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.57 E-value=0.13 Score=50.62 Aligned_cols=22 Identities=32% Similarity=0.202 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++|+|+.|+|||||++.++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 447
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.56 E-value=0.17 Score=52.03 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+++|+|+.|+|||||++.++.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 448
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=89.52 E-value=0.72 Score=51.12 Aligned_cols=90 Identities=19% Similarity=0.255 Sum_probs=52.1
Q ss_pred CeEEEEEEecCCCcHHHHH-HHHhcChhh----hccCC-ceEEEEecCCCC-HHHHHHHHHHhcc--------CCCCCCC
Q 044195 207 GFSVFSINGMGGVGKTTLA-QLVYNDDRV----QRRFQ-IKAWTFVSEDFN-VFRVTKSILKSIT--------NDQSKDD 271 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa-~~~~~~~~~----~~~f~-~~~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~ 271 (1024)
...-++|.|.+|+|||+|| ..+++.... ..+-+ ..+++-+++..+ ..++.+.+.+.-. ...+...
T Consensus 161 rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~ 240 (510)
T 2ck3_A 161 RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAA 240 (510)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCH
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCH
Confidence 4457899999999999995 466663221 01234 367888887654 4556666654211 1111111
Q ss_pred cHHH----HHHHHHHHh--CCCceeEEeecc
Q 044195 272 DLNW----VQEKLKKQL--SGKKFLLVLDDV 296 (1024)
Q Consensus 272 ~~~~----~~~~l~~~l--~~~~~LlVlDd~ 296 (1024)
.... ....+.+++ +++.+||++||+
T Consensus 241 ~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 241 PLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 1111 122344444 579999999999
No 449
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.49 E-value=0.19 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.114 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...|.|.|++|+||||+|+.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 450
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.49 E-value=0.17 Score=52.21 Aligned_cols=22 Identities=45% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++|+|+.|+|||||++.++.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999975
No 451
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.46 E-value=0.2 Score=50.87 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+++|+|+.|+|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36999999999999999999986
No 452
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.44 E-value=0.28 Score=49.76 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCCCCCCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 190 KEAIVELLLRDGLRADDGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 190 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..-+..|+.... +....|.|+|++|+|||.+|.++++
T Consensus 90 ~~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 90 ASVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 344666664321 2345799999999999999999987
No 453
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.44 E-value=0.45 Score=47.16 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.....|.|.|+.|+||||+++.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999997
No 454
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.36 E-value=0.18 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+++|+|+.|+|||||++.++.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35899999999999999999986
No 455
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.33 E-value=1.1 Score=44.89 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=46.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhh-hccC-CceEEEEecCCCCHHHHHHHHHHhccCCCC---------------CC-
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRV-QRRF-QIKAWTFVSEDFNVFRVTKSILKSITNDQS---------------KD- 270 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------------~~- 270 (1024)
+.+.|.|+.|+||||+...+.-+... .... ...+.+.........++.+.+...++.... ..
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 48999999999999877665432111 1111 223333333333334444455444332210 00
Q ss_pred ----CcHHHHHHHHHHHhCCCceeEEeeccCC
Q 044195 271 ----DDLNWVQEKLKKQLSGKKFLLVLDDVWN 298 (1024)
Q Consensus 271 ----~~~~~~~~~l~~~l~~~~~LlVlDd~~~ 298 (1024)
.....+.+.+...+. +--+||+|.++.
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~-~~~~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIR-GISHVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCT-TCCEEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhc-CCcEEEEECCcc
Confidence 234555555554333 334899999965
No 456
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.31 E-value=0.24 Score=50.89 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=22.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
....++.+.|.||+||||++..++.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4567899999999999999999985
No 457
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.31 E-value=0.24 Score=46.63 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 044195 209 SVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 458
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.30 E-value=0.21 Score=53.63 Aligned_cols=24 Identities=33% Similarity=0.309 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+++|+|+.|+||||++..++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999999987
No 459
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.24 E-value=0.16 Score=50.25 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++|+|+.|+|||||++.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 460
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.20 E-value=0.19 Score=52.51 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+++|+|+.|+|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 446899999999999999999986
No 461
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.18 E-value=0.19 Score=50.88 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++|+|+.|+|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 462
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.13 E-value=1.2 Score=49.38 Aligned_cols=51 Identities=12% Similarity=-0.007 Sum_probs=33.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
...++.|.|.+|+||||+|.+++.+...+ =..++|++.... ..++...++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms--~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG--KKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC--TTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC--HHHHHHHHHH
Confidence 34689999999999999999998743222 235667655443 3344444443
No 463
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.04 E-value=0.21 Score=52.75 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 464
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.04 E-value=0.19 Score=51.41 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++|+|+.|+|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 465
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.03 E-value=0.72 Score=53.59 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+++|+|+.|+|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 35899999999999999999976
No 466
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.01 E-value=0.19 Score=48.44 Aligned_cols=22 Identities=41% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 044195 210 VFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 467
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.97 E-value=0.096 Score=54.74 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=18.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 468
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.96 E-value=0.22 Score=48.32 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
.-.|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999999864
No 469
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.96 E-value=0.21 Score=50.92 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++|+|+.|+|||||++.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 470
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.95 E-value=0.2 Score=50.90 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++|+|+.|+|||||++.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 471
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.93 E-value=0.2 Score=51.16 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++|+|+.|+|||||.+.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 472
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=88.85 E-value=0.28 Score=47.81 Aligned_cols=111 Identities=11% Similarity=-0.054 Sum_probs=52.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCC--CCCcHHHHHHHHHHHh
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQS--KDDDLNWVQEKLKKQL 284 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l 284 (1024)
...+..++|..|.||||.|...+.. ...+-..++.+....+ ...-...++..++.... ...+.. .+.+.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r--~~~~g~kVli~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRR--TQFAKQHAIVFKPCID--NRYSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEeccC--CcchHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 3478899999999999999888873 3322223333322111 11111123333322211 011111 222223
Q ss_pred CCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCch
Q 044195 285 SGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLR 328 (1024)
Q Consensus 285 ~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~ 328 (1024)
.++--+|++|.+.--+.+.++.+....+ .|..||+|.++.+
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQD 139 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred hcCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecccc
Confidence 3334499999986543344444432111 3678999999644
No 473
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.81 E-value=0.2 Score=51.30 Aligned_cols=22 Identities=36% Similarity=0.706 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++|+|+.|+|||||++.++.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 474
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=88.78 E-value=0.93 Score=50.02 Aligned_cols=86 Identities=19% Similarity=0.213 Sum_probs=51.3
Q ss_pred CeEEEEEEecCCCcHHHHH-HHHhcChhhhccCC-ceEEEEecCCCC-HHHHHHHHHHhccC--------CCCCCCcHH-
Q 044195 207 GFSVFSINGMGGVGKTTLA-QLVYNDDRVQRRFQ-IKAWTFVSEDFN-VFRVTKSILKSITN--------DQSKDDDLN- 274 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~il~~l~~--------~~~~~~~~~- 274 (1024)
....++|.|..|+|||+|| ..+.+. .+-+ .++++-+++..+ ..++.+.+.+.-.. ..+......
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~ 236 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQY 236 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHH
T ss_pred cCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHH
Confidence 4457899999999999996 566662 2333 357888887654 45566665443111 111111111
Q ss_pred ---HHHHHHHHHh--CCCceeEEeecc
Q 044195 275 ---WVQEKLKKQL--SGKKFLLVLDDV 296 (1024)
Q Consensus 275 ---~~~~~l~~~l--~~~~~LlVlDd~ 296 (1024)
.....+.+++ +++.+||++||+
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 237 LAPYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 1112233444 689999999999
No 475
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.77 E-value=0.21 Score=51.35 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++|+|+.|+|||||++.++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 476
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.76 E-value=0.21 Score=53.97 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+++|+|++|+|||||++.++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 446999999999999999999986
No 477
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.74 E-value=0.54 Score=47.12 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=26.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEE
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTF 245 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 245 (1024)
...|.|.|+.|+||||+++.++.... ...+..++...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeec
Confidence 46899999999999999999987322 22344344443
No 478
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=88.70 E-value=0.43 Score=52.90 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=50.5
Q ss_pred CeEEEEEEecCCCcHHHHH-HHHhcChhhhccCC-ceEEEEecCCCC-HHHHHHHHHHhcc--------CCCCCCC----
Q 044195 207 GFSVFSINGMGGVGKTTLA-QLVYNDDRVQRRFQ-IKAWTFVSEDFN-VFRVTKSILKSIT--------NDQSKDD---- 271 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~il~~l~--------~~~~~~~---- 271 (1024)
...-++|.|.+|+|||+|| ..+++.. .-+ ..+++-+++..+ ..++.+.+.+.-. ...+...
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 3456899999999999995 5777632 234 347777887654 4455555543211 1111111
Q ss_pred cHHHHHHHHHHHh--CCCceeEEeecc
Q 044195 272 DLNWVQEKLKKQL--SGKKFLLVLDDV 296 (1024)
Q Consensus 272 ~~~~~~~~l~~~l--~~~~~LlVlDd~ 296 (1024)
........+.+++ +++.+||++||+
T Consensus 238 ~a~~~a~tiAEyfrd~G~dVLli~Dsl 264 (507)
T 1fx0_A 238 LAPYTGAALAEYFMYRERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 1112222333443 689999999998
No 479
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.62 E-value=0.21 Score=51.50 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
..+++|+|+.|+|||||++.++.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 480
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.57 E-value=0.22 Score=50.58 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++|+|+.|+|||||.+.++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999987
No 481
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.42 E-value=0.22 Score=50.03 Aligned_cols=25 Identities=28% Similarity=0.154 Sum_probs=22.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhc
Q 044195 206 DGFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 206 ~~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
....+|+|.|+.|+||||+++.++.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999886
No 482
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.33 E-value=0.24 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.++.|+|++|+|||||+..++.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999886
No 483
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.33 E-value=0.23 Score=50.61 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++|+|+.|+|||||.+.++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 484
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.30 E-value=0.23 Score=51.13 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++|+|+.|+|||||++.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999976
No 485
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.25 E-value=0.23 Score=51.38 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.+++|+|+.|+|||||++.++.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999987
No 486
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.21 E-value=0.26 Score=49.83 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhc
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...+|+|.|+.|+||||+++.++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999886
No 487
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=88.20 E-value=0.16 Score=59.09 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcC
Q 044195 210 VFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
-|.++|++|+|||+||+.++..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 5899999999999999999873
No 488
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=88.14 E-value=1.2 Score=60.38 Aligned_cols=147 Identities=11% Similarity=0.025 Sum_probs=0.0
Q ss_pred EEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCC-----------CCCCCcHHHHHHH
Q 044195 211 FSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITND-----------QSKDDDLNWVQEK 279 (1024)
Q Consensus 211 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~-----------~~~~~~~~~~~~~ 279 (1024)
|.++|++|+|||++|+.+.. ...=-..+.++.+...+...+++.+-..+... .
T Consensus 1270 vLL~GPpGtGKT~la~~~l~----~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~------------ 1333 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALR----NSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKS------------ 1333 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHH----SCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBS------------
T ss_pred EEEECCCCCCHHHHHHHHHh----cCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCC------------
Q ss_pred HHHHhCCCceeEEeeccCCCCHH------HHHHhhcCCCCCC------------CCcEEEEEcCCch-------hhhccC
Q 044195 280 LKKQLSGKKFLLVLDDVWNENYE------YWSIFSRPFGAGA------------PGSKIVVTTRNLR-------VTVNMG 334 (1024)
Q Consensus 280 l~~~l~~~~~LlVlDd~~~~~~~------~~~~l~~~~~~~~------------~gs~ilvTtR~~~-------~~~~~~ 334 (1024)
.+++.++.+||+.-...+ ..+.+...+..++ .+..+|.++-... -.....
T Consensus 1334 -----~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR 1408 (2695)
T 4akg_A 1334 -----DIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR 1408 (2695)
T ss_dssp -----SSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT
T ss_pred -----CCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh
Q ss_pred CccceecCCCChHhHHHHHHhhhcCCCCCCCCccHHHHHHHHHHHc
Q 044195 335 ADQAYQLKELSNDDCLCLLTQISLGTGDFNIHPSLKEVGEKIVMKC 380 (1024)
Q Consensus 335 ~~~~~~l~~L~~~ea~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~ 380 (1024)
...++.++..+.++-..+|.....+.. ...+.+..++..|+...
T Consensus 1409 rf~vi~i~~P~~~~l~~I~~~il~~~l--~~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1409 HAAILYLGYPSGKSLSQIYEIYYKAIF--KLVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp TEEEEECCCCTTTHHHHHHHHHHHHHT--TSSGGGGGGHHHHHHHH
T ss_pred eeeEEEeCCCCHHHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHH
No 489
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=88.13 E-value=1.1 Score=45.01 Aligned_cols=104 Identities=14% Similarity=0.064 Sum_probs=53.3
Q ss_pred EEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCC--------CCC-----CCcHHHHH
Q 044195 211 FSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITND--------QSK-----DDDLNWVQ 277 (1024)
Q Consensus 211 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~--------~~~-----~~~~~~~~ 277 (1024)
+.|+|+.|.|||.+|..++.. . . ..++++ +....-..+..+.+.. ++.. ... ....+.+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~--~--~-~~~liv-~P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~ 183 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINE--L--S-TPTLIV-VPTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAY 183 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHH--S--C-SCEEEE-ESSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH--c--C-CCEEEE-eCCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHH
Confidence 788999999999999888752 1 1 223333 3322212233333222 2111 000 01223333
Q ss_pred HHHHHHhCCCceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcC
Q 044195 278 EKLKKQLSGKKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTR 325 (1024)
Q Consensus 278 ~~l~~~l~~~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR 325 (1024)
.... .+.++--+||+|+++.-....+..+...+. ...++.+|..
T Consensus 184 ~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSAT 227 (237)
T 2fz4_A 184 VNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTAT 227 (237)
T ss_dssp HTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEES
T ss_pred hhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEecC
Confidence 3332 334556699999997654455666655443 2335555543
No 490
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=87.96 E-value=0.91 Score=52.94 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=58.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhh-ccCCceEEEEecCCCCHHHHHHHH---HHhccCCC-------CCCCcHHHHH
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQ-RRFQIKAWTFVSEDFNVFRVTKSI---LKSITNDQ-------SKDDDLNWVQ 277 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i---l~~l~~~~-------~~~~~~~~~~ 277 (1024)
+++.|.|.+|+||||++..+....... ..-...+.+.+....-...+...+ ...++... ........+.
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~~~~~~~~~Tih~ll 244 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL 244 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTTSCC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHHhccchhhhhhHhhh
Confidence 589999999999999988776521110 011235555554433233222222 22221100 0011111000
Q ss_pred H-----HHHHHhCC---CceeEEeeccCCCCHHHHHHhhcCCCCCCCCcEEEEEcCCchh
Q 044195 278 E-----KLKKQLSG---KKFLLVLDDVWNENYEYWSIFSRPFGAGAPGSKIVVTTRNLRV 329 (1024)
Q Consensus 278 ~-----~l~~~l~~---~~~LlVlDd~~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~ 329 (1024)
. .-...-.. +--+||+|++..-+......+...++ .+.++|+.--..+.
T Consensus 245 ~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~~~~~~~Ll~~l~---~~~~liLvGD~~QL 301 (608)
T 1w36_D 245 GAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALP---DHARVIFLGDRDQL 301 (608)
T ss_dssp -----------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTCC---TTCEEEEEECTTSG
T ss_pred ccCCCchHHHhccCCCCCCCEEEEechhhCCHHHHHHHHHhCC---CCCEEEEEcchhhc
Confidence 0 00011111 23389999997655555666766665 46788887655444
No 491
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=87.93 E-value=0.47 Score=51.85 Aligned_cols=90 Identities=10% Similarity=0.069 Sum_probs=52.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhh--------ccCC-ceEEEEecCCCC-HHHHHHHHHHhc--------cCCCC
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQ--------RRFQ-IKAWTFVSEDFN-VFRVTKSILKSI--------TNDQS 268 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~--------~~f~-~~~wv~~~~~~~-~~~~~~~il~~l--------~~~~~ 268 (1024)
...-++|.|.+|+|||+|+.++++..... .+=+ ..+++-+++... ..++.+++.+.- ....+
T Consensus 146 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d 225 (464)
T 3gqb_B 146 RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKAD 225 (464)
T ss_dssp TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETT
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCC
Confidence 33467899999999999999998743221 0111 566777776543 455555554421 01111
Q ss_pred CCCcHH----HHHHHHHHHh---CCCceeEEeecc
Q 044195 269 KDDDLN----WVQEKLKKQL---SGKKFLLVLDDV 296 (1024)
Q Consensus 269 ~~~~~~----~~~~~l~~~l---~~~~~LlVlDd~ 296 (1024)
...... ...-.+.+++ +++.+|+++||+
T Consensus 226 ~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 226 DPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 111111 1222345555 378999999999
No 492
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.93 E-value=0.25 Score=48.33 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhcC
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
...|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999999864
No 493
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.89 E-value=0.8 Score=58.98 Aligned_cols=83 Identities=23% Similarity=0.169 Sum_probs=58.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHHhccCCCC-----CCCcHHHHHHHHH
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILKSITNDQS-----KDDDLNWVQEKLK 281 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 281 (1024)
..++|-|+|+.|+||||||.++.. ..+..=...+|+++....+..- ++.++.+.+ .+...++....+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 447999999999999999999987 4555556788998888777654 555554432 2233344444455
Q ss_pred HHh-CCCceeEEeecc
Q 044195 282 KQL-SGKKFLLVLDDV 296 (1024)
Q Consensus 282 ~~l-~~~~~LlVlDd~ 296 (1024)
..+ .+..-+||+|-|
T Consensus 1503 ~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHTCCSEEEESCS
T ss_pred HHHHcCCCCEEEEccH
Confidence 555 456779999988
No 494
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.83 E-value=0.71 Score=45.44 Aligned_cols=52 Identities=23% Similarity=0.238 Sum_probs=32.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCCCHHHHHHHHHH
Q 044195 209 SVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDFNVFRVTKSILK 261 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (1024)
..|.|.|+.|+||||+++.++.... ...+..+++..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~-~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE-QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 5899999999999999999987322 223433444333333334455555554
No 495
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.75 E-value=0.34 Score=46.65 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcC
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999874
No 496
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.75 E-value=0.48 Score=47.14 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=18.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhc
Q 044195 208 FSVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 208 ~~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
...|.|.|+.|+||||+++.++.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 497
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.65 E-value=0.31 Score=52.64 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhc
Q 044195 209 SVFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
++|+|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 6899999999999999999986
No 498
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.63 E-value=0.32 Score=45.29 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhcC
Q 044195 209 SVFSINGMGGVGKTTLAQLVYND 231 (1024)
Q Consensus 209 ~vv~I~G~~GiGKTtLa~~~~~~ 231 (1024)
+-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 499
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.54 E-value=0.3 Score=50.32 Aligned_cols=21 Identities=29% Similarity=0.599 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 044195 210 VFSINGMGGVGKTTLAQLVYN 230 (1024)
Q Consensus 210 vv~I~G~~GiGKTtLa~~~~~ 230 (1024)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999986
No 500
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=87.40 E-value=0.53 Score=52.51 Aligned_cols=40 Identities=18% Similarity=0.006 Sum_probs=31.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhcChhhhccCCceEEEEecCCC
Q 044195 207 GFSVFSINGMGGVGKTTLAQLVYNDDRVQRRFQIKAWTFVSEDF 250 (1024)
Q Consensus 207 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 250 (1024)
....++|.|..|+|||+|+.++++. .+-+.++++-+++..
T Consensus 220 rGqr~~Ifg~~g~GKT~l~~~ia~~----~~~~v~V~~~iGER~ 259 (578)
T 3gqb_A 220 MGGTAAIPGPFGSGKSVTQQSLAKW----SNADVVVYVGSGERG 259 (578)
T ss_dssp TTCEEEECCCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECH
T ss_pred CCCEEeeeCCCCccHHHHHHHHHhc----cCCCEEEEEEecccH
Confidence 4467899999999999999999872 233567788888764
Done!