BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044196
(409 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
Length = 371
Score = 232 bits (591), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 135/376 (35%), Positives = 208/376 (55%), Gaps = 22/376 (5%)
Query: 39 SPPAADGICRSMVQSQGYICHEHTVTTQDGYILSMQRMP--KARSGKPADMPPVLLQHGL 96
SP I + M+ GY E+ V T+DGYIL + R+P K SG P V LQHGL
Sbjct: 1 SPEVTMNISQ-MITYWGYPNEEYEVVTEDGYILEVNRIPYGKKNSGNTGQRPVVFLQHGL 59
Query: 97 LMDGITWLLNSPNESLAFILAEKGYDVWIANTRGTKYSLGHTSLSPNDPAYWEWTWDELM 156
L W+ N PN SLAFILA+ GYDVW+ N+RG ++ + SP+ +W +++DE+
Sbjct: 60 LASATNWISNLPNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMA 119
Query: 157 AYDVTASVKFVHDQTGQQKLHYVGHSLGTLVAFAAFSQD-KLVSMIRSAALLSPIAYLGQ 215
YD+ A++ F+ +TGQ++LHYVGHS GT + F AFS + L I++ L+P+A +
Sbjct: 120 KYDLPATIDFIVKKTGQKQLHYVGHSQGTTIGFIAFSTNPSLAKRIKTFYALAPVATVKY 179
Query: 216 MPSQLARSAVDAFLAEDI--YWLGLHEFAPRGGAVAKLLEDICQKPGNN--CSN---LMS 268
S + + F+ + + + G F P L ++C + N CSN ++
Sbjct: 180 TKSLINKL---RFVPQSLFKFIFGDKIFYPHNFFDQFLATEVCSREMLNLLCSNALFIIC 236
Query: 269 SFTGQNCCLNSSRTDIFLEHEPQSTATKNMIHLAQMARKGTIAMYDYGNEDDNMNHYGQP 328
F +N N+SR D++L H P T+ +NM H Q + G YD+G+ N HY Q
Sbjct: 237 GFDSKN--FNTSRLDVYLSHNPAGTSVQNMFHWTQAVKSGKFQAYDWGSPVQNRMHYDQS 294
Query: 329 TPPVYNMTKIPKDLPLFLSYGGKDLLSDVKDVKHLLGNLKDHDSDKLVVQYIKDYAHADF 388
PP YN+T + ++P+ + GGKDLL+D +DV LL L + + + I Y H DF
Sbjct: 295 QPPYYNVTAM--NVPIAVWNGGKDLLADPQDVGLLLPKL----PNLIYHKEIPFYNHLDF 348
Query: 389 VFGIQANRDVYDPMMA 404
++ + A ++VY+ +++
Sbjct: 349 IWAMDAPQEVYNDIVS 364
>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
Length = 377
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 134/378 (35%), Positives = 205/378 (54%), Gaps = 15/378 (3%)
Query: 34 GKFVSSPPAADGICRSMVQSQGYICHEHTVTTQDGYILSMQRMPKAR--SGKPADMPPVL 91
GK + P M+ GY E+ V T+DGYIL + R+P R S P
Sbjct: 3 GKLHPTNPEVTMNISQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAF 62
Query: 92 LQHGLLMDGITWLLNSPNESLAFILAEKGYDVWIANTRGTKYSLGHTSLSPNDPAYWEWT 151
LQHGLL W+ N PN SLAFILA+ GYDVW+ N+RG ++ + SP+ +W ++
Sbjct: 63 LQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFS 122
Query: 152 WDELMAYDVTASVKFVHDQTGQQKLHYVGHSLGTLVAFAAFSQD-KLVSMIRSAALLSPI 210
+DE+ YD+ A++ F+ +TGQ KLHYVGHS GT + F AFS + KL I++ L+P+
Sbjct: 123 FDEMAKYDLPATIDFILKKTGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAPV 182
Query: 211 AYLGQMPSQLAR-SAVDAFLAEDIYWLGLHEFAPRGGAVAKLLEDICQKPGNN--CSNLM 267
A + + + + V +FL + I+ G F P L ++C + + CSN +
Sbjct: 183 ATVKYTETLINKLMLVPSFLFKLIF--GNKIFYPHHFFDQFLATEVCSRETVDLLCSNAL 240
Query: 268 SSFTGQNCC-LNSSRTDIFLEHEPQSTATKNMIHLAQMARKGTIAMYDYGNEDDNMNHYG 326
G + LN SR D++L H P T+ +N++H +Q + G +D+G+ NM HY
Sbjct: 241 FIICGFDTMNLNMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYH 300
Query: 327 QPTPPVYNMTKIPKDLPLFLSYGGKDLLSDVKDVKHLLGNLKDHDSDKLVVQYIKDYAHA 386
Q PP YN+T + +P+ + GG DLL+D DV LL L + + + I Y H
Sbjct: 301 QSMPPYYNLTDM--HVPIAVWNGGNDLLADPHDVDLLLSKL----PNLIYHRKIPPYNHL 354
Query: 387 DFVFGIQANRDVYDPMMA 404
DF++ + A + VY+ +++
Sbjct: 355 DFIWAMDAPQAVYNEIVS 372
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 75/222 (33%), Gaps = 44/222 (19%)
Query: 84 PADMPPVLLQHGLLMDGITWLLNSPNESLAFILAEKGYDVWIANTRGTKYSLGHTSLSPN 143
P D PP++L HG L W N + S Y + + G K ++S
Sbjct: 64 PEDAPPLVLLHGALFSSTXWYPNIADWS-------SKYRTYAVDIIGDKNKSIPENVSGT 116
Query: 144 DPAYWEWTWDELMAYDVTASVKFVHDQTGQQKLHYVGHSLGTLVAFAAFSQDKLVSMIRS 203
Y W D V D G +K H +G SLG L + ++S
Sbjct: 117 RTDYANWLLD-------------VFDNLGIEKSHXIGLSLGGLHTXNFLLRXP--ERVKS 161
Query: 204 AALLSPIA--------YLGQMPSQLARSAVDAFLAEDIYWLG-----LHEFAPRGGAVAK 250
AA+LSP + A + V+ FL W LH +
Sbjct: 162 AAILSPAETFLPFHHDFYKYALGLTASNGVETFLN----WXXNDQNVLHPIFVKQFKAGV 217
Query: 251 LLEDICQKPGNNCSNLMSSFTGQNCCLNSSRTDIFL---EHE 289
+D + P N FT + L S+R I L EHE
Sbjct: 218 XWQDGSRNPNPNADGFPYVFTDEE--LRSARVPILLLLGEHE 257
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 19/112 (16%)
Query: 82 GKPADMPPVLLQHGLLMDGITWLLNSPNESLAFILAEKGYDVWIANTRGTKYSLGHTSLS 141
G P + P VL HG+L G+ W + +A LA +GY V + G G +S
Sbjct: 22 GSP-EHPVVLCIHGILEQGLAW------QEVALPLAAQGYRVVAPDLFGH----GRSSHL 70
Query: 142 PNDPAYWEWTWDELMAYDVTASVKFVHDQTGQQKLHYVGHSLGTLVAFAAFS 193
+Y T+ A + V + Q L VGHS+G ++A A S
Sbjct: 71 EMVTSYSSLTF--------LAQIDRVIQELPDQPLLLVGHSMGAMLATAIAS 114
>pdb|1U9C|A Chain A, Crystallographic Structure Of Apc35852
Length = 224
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 114 FILAEKGYDVWIANTRGTKYSLGHTSLSPNDPAYWE 149
+ EKGYDV +A+ +G + L S++ DP++ E
Sbjct: 36 LVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAE 71
>pdb|1ZYQ|A Chain A, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
Length = 698
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 32/153 (20%)
Query: 35 KFVSSPPA----ADGICRSMVQSQGYICHEHTVTTQDGYILSMQRMPKARSGKPADMPPV 90
KF+ + PA + I +++V+S ++ E V + +I +
Sbjct: 548 KFLENTPAIAALRESIQQTLVESSQWVAGEQQVKWKRRWIKGL----------------- 590
Query: 91 LLQHGLLMDGITWLLNSPNESLAFILAEKGY---DVWIANTRGTKYSLGHTSLSPNDPAY 147
DG + SP+ +L +L G +WI T G D AY
Sbjct: 591 --------DGRKVHVRSPHAALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAY 642
Query: 148 WEWTWDELMAYDVTASVKFVHDQTGQQKLHYVG 180
W DE+ T + V +T Q+ + +VG
Sbjct: 643 MAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVG 675
>pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|A Chain A, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|A Chain A, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|A Chain A, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|C Chain C, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|A Chain A, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|A Chain A, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|A Chain A, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|A Chain A, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|A Chain A, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|A Chain A, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|A Chain A, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|A Chain A, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide
Length = 698
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 32/153 (20%)
Query: 35 KFVSSPPA----ADGICRSMVQSQGYICHEHTVTTQDGYILSMQRMPKARSGKPADMPPV 90
KF+ + PA + I +++V+S ++ E V + +I +
Sbjct: 548 KFLENTPAIAALRESIQQTLVESSQWVAGEQQVKWKRRWIKGL----------------- 590
Query: 91 LLQHGLLMDGITWLLNSPNESLAFILAEKGY---DVWIANTRGTKYSLGHTSLSPNDPAY 147
DG + SP+ +L +L G +WI T G D AY
Sbjct: 591 --------DGRKVHVRSPHAALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAY 642
Query: 148 WEWTWDELMAYDVTASVKFVHDQTGQQKLHYVG 180
W DE+ T + V +T Q+ + +VG
Sbjct: 643 MAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVG 675
>pdb|2AJQ|A Chain A, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|F Chain F, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
Length = 704
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 32/153 (20%)
Query: 35 KFVSSPPA----ADGICRSMVQSQGYICHEHTVTTQDGYILSMQRMPKARSGKPADMPPV 90
KF+ + PA + I +++V+S ++ E V + +I +
Sbjct: 554 KFLENTPAIAALRESIQQTLVESSQWVAGEQQVKWKRRWIKGL----------------- 596
Query: 91 LLQHGLLMDGITWLLNSPNESLAFILAEKGY---DVWIANTRGTKYSLGHTSLSPNDPAY 147
DG + SP+ +L +L G +WI T G D AY
Sbjct: 597 --------DGRKVHVRSPHAALNTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAY 648
Query: 148 WEWTWDELMAYDVTASVKFVHDQTGQQKLHYVG 180
W DE+ T + V +T Q+ + +VG
Sbjct: 649 MAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVG 681
>pdb|3P1W|A Chain A, Crystal Structure Of Rab Gdi From Plasmodium Falciparum,
Pfl2060c
Length = 475
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 29/67 (43%)
Query: 151 TWDELMAYDVTASVKFVHDQTGQQKLHYVGHSLGTLVAFAAFSQDKLVSMIRSAALLSPI 210
TWD L Y +T + H Q + ++GH++ + Q +++ R + I
Sbjct: 181 TWDNLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSI 240
Query: 211 AYLGQMP 217
+ G+ P
Sbjct: 241 SAFGKSP 247
>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin
Reductase, C- Terminal 3-Residue Truncation
Length = 488
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 60 EHTVTTQD----GYILSMQRMPKARSGKPADMPPV--LLQHGLLMDGITWLLNSPNESL 112
EHTV D +LS + + A G+P V L++G+ D I WL SP ++L
Sbjct: 131 EHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKESPGKTL 189
>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
pdb|1ZKQ|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
Length = 517
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 60 EHTVTTQD----GYILSMQRMPKARSGKPADMPPV--LLQHGLLMDGITWLLNSPNESL 112
EHTV D +LS + + A G+P V L++G+ D I WL SP ++L
Sbjct: 157 EHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKESPGKTL 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,505,985
Number of Sequences: 62578
Number of extensions: 532056
Number of successful extensions: 1258
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1244
Number of HSP's gapped (non-prelim): 14
length of query: 409
length of database: 14,973,337
effective HSP length: 101
effective length of query: 308
effective length of database: 8,652,959
effective search space: 2665111372
effective search space used: 2665111372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)