Query 044197
Match_columns 202
No_of_seqs 154 out of 1575
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 12:21:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044197.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044197hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 100.0 7.9E-29 1.7E-33 192.9 15.3 107 71-187 31-138 (142)
2 PRK10743 heat shock protein Ib 100.0 2.8E-28 6E-33 189.1 14.3 103 72-184 34-137 (137)
3 COG0071 IbpA Molecular chapero 99.9 7.5E-27 1.6E-31 182.9 14.8 108 71-184 39-146 (146)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 2.6E-26 5.7E-31 166.4 12.1 92 74-169 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 1.7E-24 3.7E-29 159.0 14.0 102 76-184 1-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 1.1E-24 2.3E-29 158.0 12.1 92 74-169 2-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 1.2E-23 2.7E-28 152.0 12.8 89 73-169 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 5.2E-23 1.1E-27 147.7 11.3 82 76-169 4-86 (86)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 1.9E-22 4.1E-27 143.8 11.0 82 76-169 1-83 (83)
10 cd06479 ACD_HspB7_like Alpha c 99.9 1.6E-22 3.4E-27 143.5 9.4 79 76-169 2-81 (81)
11 cd06498 ACD_alphaB-crystallin_ 99.9 6E-22 1.3E-26 141.5 11.0 82 77-170 2-84 (84)
12 cd06476 ACD_HspB2_like Alpha c 99.9 2.5E-21 5.4E-26 138.0 11.1 81 77-169 2-83 (83)
13 cd06475 ACD_HspB1_like Alpha c 99.9 3.9E-21 8.4E-26 137.9 11.0 82 75-168 3-85 (86)
14 cd06481 ACD_HspB9_like Alpha c 99.9 3E-21 6.6E-26 138.8 10.0 83 79-169 4-87 (87)
15 cd06482 ACD_HspB10 Alpha cryst 99.9 6.3E-21 1.4E-25 137.0 10.2 81 80-169 6-87 (87)
16 cd06464 ACD_sHsps-like Alpha-c 99.8 1.5E-20 3.2E-25 133.3 11.8 88 76-169 1-88 (88)
17 cd06477 ACD_HspB3_Like Alpha c 99.8 3.1E-20 6.7E-25 132.3 10.9 79 78-168 3-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.8 3.1E-20 6.7E-25 132.1 8.9 77 81-169 6-83 (83)
19 KOG0710 Molecular chaperone (s 99.7 2.2E-18 4.7E-23 141.2 7.2 111 71-183 83-194 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.7 2.8E-17 6E-22 118.9 10.1 80 77-168 10-90 (91)
21 KOG3591 Alpha crystallins [Pos 99.7 2.1E-16 4.6E-21 126.9 12.5 105 73-190 63-168 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.5 5.9E-14 1.3E-18 95.9 10.1 80 77-169 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.3 1.6E-11 3.6E-16 85.5 9.1 71 77-172 1-71 (78)
24 cd06463 p23_like Proteins cont 99.0 3.5E-09 7.7E-14 73.5 9.3 76 77-172 1-76 (84)
25 PF05455 GvpH: GvpH; InterPro 99.0 3.3E-09 7.1E-14 85.0 9.8 79 71-173 90-171 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.8 5E-08 1.1E-12 68.6 8.5 77 76-172 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.5 7.9E-06 1.7E-10 56.0 12.1 77 73-169 1-79 (79)
28 PF08190 PIH1: pre-RNA process 98.1 1.7E-05 3.7E-10 69.1 8.7 65 81-168 260-327 (328)
29 cd06465 p23_hB-ind1_like p23_l 98.0 8.3E-05 1.8E-09 55.0 10.2 78 73-171 1-78 (108)
30 cd06489 p23_CS_hSgt1_like p23_ 98.0 6.5E-05 1.4E-09 53.0 9.0 77 76-172 1-77 (84)
31 cd06467 p23_NUDC_like p23_like 97.9 0.00013 2.9E-09 51.1 8.9 74 76-172 2-77 (85)
32 cd06488 p23_melusin_like p23_l 97.7 0.00051 1.1E-08 48.9 10.0 79 74-172 2-80 (87)
33 cd06493 p23_NUDCD1_like p23_NU 97.7 0.0006 1.3E-08 48.2 9.2 75 75-172 1-77 (85)
34 cd06468 p23_CacyBP p23_like do 97.6 0.0011 2.4E-08 47.2 10.2 79 74-172 3-85 (92)
35 cd06494 p23_NUDCD2_like p23-li 97.1 0.0069 1.5E-07 43.9 9.3 76 72-171 5-82 (93)
36 cd00237 p23 p23 binds heat sho 97.1 0.013 2.9E-07 43.4 10.6 78 73-172 2-79 (106)
37 PLN03088 SGT1, suppressor of 96.6 0.013 2.8E-07 52.1 9.3 81 72-172 156-236 (356)
38 KOG1309 Suppressor of G2 allel 96.3 0.017 3.6E-07 46.7 7.0 81 72-172 3-83 (196)
39 cd06492 p23_mNUDC_like p23-lik 96.0 0.089 1.9E-06 37.4 9.0 73 76-171 2-78 (87)
40 cd06490 p23_NCB5OR p23_like do 96.0 0.15 3.2E-06 36.2 9.9 76 75-172 1-80 (87)
41 cd06495 p23_NUDCD3_like p23-li 94.2 1 2.2E-05 33.1 10.1 79 73-171 5-86 (102)
42 PF13349 DUF4097: Domain of un 86.9 9.2 0.0002 29.3 9.6 83 73-167 66-148 (166)
43 COG5091 SGT1 Suppressor of G2 84.0 0.88 1.9E-05 39.4 2.6 82 73-173 177-258 (368)
44 PF14913 DPCD: DPCD protein fa 80.1 17 0.00037 29.8 8.5 77 72-171 86-170 (194)
45 KOG3158 HSP90 co-chaperone p23 79.9 7.6 0.00016 31.4 6.4 79 71-171 6-84 (180)
46 cd06526 metazoan_ACD Alpha-cry 79.6 3.1 6.8E-05 28.8 3.8 32 82-113 50-82 (83)
47 cd06477 ACD_HspB3_Like Alpha c 76.3 5.2 0.00011 28.2 4.1 30 83-113 51-82 (83)
48 cd06480 ACD_HspB8_like Alpha-c 76.0 5.3 0.00012 28.7 4.1 31 82-112 58-89 (91)
49 cd06482 ACD_HspB10 Alpha cryst 75.3 6.6 0.00014 27.9 4.4 34 138-172 9-42 (87)
50 cd06464 ACD_sHsps-like Alpha-c 74.7 5.7 0.00012 26.9 4.0 33 80-113 54-87 (88)
51 KOG2265 Nuclear distribution p 73.1 29 0.00063 28.1 8.0 78 72-172 18-97 (179)
52 PF00011 HSP20: Hsp20/alpha cr 72.9 6.8 0.00015 27.8 4.2 34 82-116 55-89 (102)
53 KOG3591 Alpha crystallins [Pos 72.6 4.7 0.0001 32.4 3.5 30 87-116 120-150 (173)
54 cd06472 ACD_ScHsp26_like Alpha 70.8 7.2 0.00016 27.4 3.8 31 81-112 59-90 (92)
55 cd06470 ACD_IbpA-B_like Alpha- 70.2 15 0.00033 25.8 5.4 36 137-173 11-46 (90)
56 cd06476 ACD_HspB2_like Alpha c 69.4 8.8 0.00019 26.9 3.9 33 138-171 8-40 (83)
57 cd06478 ACD_HspB4-5-6 Alpha-cr 68.7 11 0.00024 26.2 4.4 32 138-170 8-39 (83)
58 cd06481 ACD_HspB9_like Alpha c 68.6 8 0.00017 27.3 3.6 31 81-112 53-85 (87)
59 KOG1667 Zn2+-binding protein M 68.3 29 0.00063 29.9 7.4 84 71-173 213-296 (320)
60 cd06471 ACD_LpsHSP_like Group 67.9 9 0.00019 26.9 3.8 30 82-112 62-91 (93)
61 cd06498 ACD_alphaB-crystallin_ 67.6 9.2 0.0002 26.8 3.7 31 83-114 51-83 (84)
62 PRK10743 heat shock protein Ib 67.6 19 0.0004 27.8 5.7 32 139-171 47-78 (137)
63 cd06479 ACD_HspB7_like Alpha c 65.9 15 0.00032 25.6 4.5 33 138-171 9-41 (81)
64 cd06497 ACD_alphaA-crystallin_ 65.5 15 0.00033 25.8 4.5 32 138-170 11-42 (86)
65 cd06469 p23_DYX1C1_like p23_li 64.9 17 0.00038 24.2 4.7 34 82-116 36-70 (78)
66 PF08308 PEGA: PEGA domain; I 62.3 31 0.00066 22.7 5.4 42 74-115 26-68 (71)
67 cd01759 PLAT_PL PLAT/LH2 domai 62.0 64 0.0014 24.1 8.2 45 138-188 45-90 (113)
68 PRK11597 heat shock chaperone 61.6 25 0.00054 27.3 5.5 32 139-171 45-76 (142)
69 PRK05518 rpl6p 50S ribosomal p 60.4 34 0.00073 27.7 6.2 45 95-168 13-57 (180)
70 cd00298 ACD_sHsps_p23-like Thi 60.1 17 0.00037 23.3 3.9 32 81-113 47-79 (80)
71 TIGR03653 arch_L6P archaeal ri 59.2 40 0.00086 27.0 6.4 45 95-168 7-51 (170)
72 COG0071 IbpA Molecular chapero 57.5 29 0.00063 26.6 5.3 34 82-116 100-134 (146)
73 PF04972 BON: BON domain; Int 57.2 18 0.00038 23.3 3.5 25 91-116 12-36 (64)
74 cd06475 ACD_HspB1_like Alpha c 56.1 30 0.00064 24.2 4.7 33 138-171 11-43 (86)
75 TIGR03654 L6_bact ribosomal pr 54.7 45 0.00098 26.7 6.1 44 95-168 11-54 (175)
76 PF12992 DUF3876: Domain of un 52.2 62 0.0013 23.4 5.9 40 71-111 24-68 (95)
77 PRK05498 rplF 50S ribosomal pr 51.6 48 0.001 26.6 5.8 21 95-116 12-32 (178)
78 PTZ00027 60S ribosomal protein 50.1 51 0.0011 26.9 5.8 47 95-168 13-59 (190)
79 PF14730 DUF4468: Domain of un 48.5 71 0.0015 22.4 5.7 17 153-169 69-85 (91)
80 PF01954 DUF104: Protein of un 48.1 18 0.00038 24.0 2.3 33 152-186 3-35 (60)
81 TIGR02856 spore_yqfC sporulati 46.0 25 0.00055 24.8 2.9 24 90-114 38-61 (85)
82 PRK10568 periplasmic protein; 44.6 40 0.00087 27.5 4.4 25 91-116 73-97 (203)
83 CHL00140 rpl6 ribosomal protei 42.3 64 0.0014 25.9 5.2 21 95-116 12-32 (178)
84 PTZ00179 60S ribosomal protein 40.7 77 0.0017 25.8 5.4 21 95-116 12-32 (189)
85 cd06463 p23_like Proteins cont 39.1 78 0.0017 20.7 4.5 35 81-116 40-75 (84)
86 cd06467 p23_NUDC_like p23_like 37.6 1.1E+02 0.0023 20.6 5.1 30 139-168 10-39 (85)
87 PF07172 GRP: Glycine rich pro 37.0 25 0.00055 25.4 1.8 11 1-11 1-11 (95)
88 cd02178 GH16_beta_agarase Beta 35.7 1.2E+02 0.0027 25.4 6.1 45 100-148 60-110 (258)
89 COG4004 Uncharacterized protei 33.9 93 0.002 22.5 4.2 35 75-114 26-60 (96)
90 PF10766 DUF2592: Protein of u 33.4 30 0.00065 21.0 1.4 19 2-20 2-20 (41)
91 KOG3413 Mitochondrial matrix p 31.5 23 0.00051 27.8 0.9 25 145-169 65-89 (156)
92 cd00503 Frataxin Frataxin is a 31.3 50 0.0011 24.2 2.6 18 152-169 28-45 (105)
93 PF07873 YabP: YabP family; I 29.9 49 0.0011 22.0 2.2 23 93-116 23-45 (66)
94 cd02175 GH16_lichenase lichena 29.4 1.8E+02 0.0038 23.6 5.9 49 95-148 31-80 (212)
95 cd06466 p23_CS_SGT1_like p23_l 28.9 1.3E+02 0.0029 20.0 4.4 35 81-116 41-76 (84)
96 PF01491 Frataxin_Cyay: Fratax 28.6 71 0.0015 23.5 3.1 19 152-170 30-48 (109)
97 PRK11198 LysM domain/BON super 27.4 74 0.0016 24.6 3.2 25 91-116 38-62 (147)
98 PF00347 Ribosomal_L6: Ribosom 27.2 1.8E+02 0.0038 19.2 4.7 47 95-169 2-48 (77)
99 KOG0100 Molecular chaperones G 26.6 2.3E+02 0.0049 26.5 6.4 59 134-195 484-545 (663)
100 TIGR03421 FeS_CyaY iron donor 26.5 58 0.0013 23.8 2.3 17 153-169 26-42 (102)
101 PRK00446 cyaY frataxin-like pr 26.3 62 0.0013 23.8 2.4 17 154-170 29-45 (105)
102 PRK13726 conjugal transfer pil 24.9 1.2E+02 0.0026 24.6 4.1 20 96-116 131-150 (188)
103 PRK14290 chaperone protein Dna 24.8 5E+02 0.011 23.1 8.4 46 139-188 274-319 (365)
104 cd00098 IgC Immunoglobulin Con 24.7 2.2E+02 0.0048 19.0 5.3 74 79-163 11-86 (95)
105 cd08023 GH16_laminarinase_like 24.6 3.1E+02 0.0068 22.2 6.7 55 91-148 33-91 (235)
106 TIGR02934 nifT_nitrog probable 24.0 77 0.0017 21.5 2.3 23 159-185 9-31 (67)
107 PF06988 NifT: NifT/FixU prote 24.0 80 0.0017 21.2 2.4 22 159-184 9-30 (64)
108 PRK10081 entericidin B membran 23.1 56 0.0012 20.7 1.4 20 1-20 1-20 (48)
109 cd02179 GH16_beta_GRP beta-1,3 22.9 5E+02 0.011 22.8 7.9 14 134-147 109-122 (321)
110 cd02180 GH16_fungal_KRE6_gluca 22.9 2E+02 0.0043 25.1 5.3 50 94-148 39-91 (295)
111 TIGR02892 spore_yabP sporulati 22.3 77 0.0017 22.4 2.2 23 92-115 21-43 (85)
112 cd06494 p23_NUDCD2_like p23-li 22.3 2.9E+02 0.0064 19.5 6.0 31 137-167 15-45 (93)
113 cd07698 IgC_MHC_I_alpha3 Class 21.9 2.7E+02 0.0059 19.1 6.6 69 81-161 14-82 (93)
114 PF13349 DUF4097: Domain of un 21.6 1.4E+02 0.0031 22.5 3.8 15 75-89 87-101 (166)
115 PF13620 CarboxypepD_reg: Carb 21.5 1.2E+02 0.0025 20.1 3.0 29 82-110 48-77 (82)
116 PF07654 C1-set: Immunoglobuli 20.5 2.5E+02 0.0054 18.7 4.5 28 81-108 8-35 (83)
117 PF07706 TAT_ubiq: Aminotransf 20.4 1.2E+02 0.0027 18.4 2.4 33 82-114 2-34 (40)
118 TIGR03422 mito_frataxin fratax 20.3 76 0.0016 23.0 1.8 16 155-170 30-45 (97)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.96 E-value=7.9e-29 Score=192.92 Aligned_cols=107 Identities=21% Similarity=0.337 Sum_probs=94.3
Q ss_pred cccceeEEE-cCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCC
Q 044197 71 ALARADLME-TPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSA 149 (202)
Q Consensus 71 ~~p~idv~e-~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~v 149 (202)
..|++||+| ++++|+|+++|||++++||+|.+++ +.|+|+|+++. + .++..|+++||++|+|+|+|.||++|
T Consensus 31 ~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~----~--~~~~~~~~~Er~~g~F~R~f~LP~~v 103 (142)
T PRK11597 31 SFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQ----P--EKEVKWLHQGLVNQPFSLSFTLAENM 103 (142)
T ss_pred CCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEcc----c--cCCCcEEEEEEeCcEEEEEEECCCCc
Confidence 458899998 5779999999999999999999999 89999999754 2 35678999999999999999999999
Q ss_pred ccCCeEEEEeCCEEEEEEeccCcccCCCCeEEEecCCC
Q 044197 150 DLDHIKAHMENGILRVTEPKLAEEKKRQPKVINIDEES 187 (202)
Q Consensus 150 d~~~I~A~~~~GvL~I~iPK~~~~~~~~~r~I~I~~~~ 187 (202)
|.+ +|+|+||||+|++||..++ ..++|+|+|+.-.
T Consensus 104 d~~--~A~~~nGVL~I~lPK~~~~-~~~~rkI~I~~~~ 138 (142)
T PRK11597 104 EVS--GATFVNGLLHIDLIRNEPE-AIAPQRIAISERP 138 (142)
T ss_pred ccC--cCEEcCCEEEEEEeccCcc-ccCCcEEEECCcc
Confidence 998 6999999999999997443 4578999998754
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.96 E-value=2.8e-28 Score=189.06 Aligned_cols=103 Identities=17% Similarity=0.325 Sum_probs=91.5
Q ss_pred ccceeEEE-cCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCc
Q 044197 72 LARADLME-TPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSAD 150 (202)
Q Consensus 72 ~p~idv~e-~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd 150 (202)
.|++||++ ++++|+|+++|||++++||+|++++ +.|+|+|+++. + .++..|+++||++|+|+|+|.||.+||
T Consensus 34 ~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~----~--~~~~~~~~~Er~~g~F~R~~~LP~~Vd 106 (137)
T PRK10743 34 YPPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHAD----E--QKERTYLYQGIAERNFERKFQLAENIH 106 (137)
T ss_pred CCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEECc----c--ccCCcEEEEEEECCEEEEEEECCCCcc
Confidence 38899994 8999999999999999999999999 89999999865 2 256679999999999999999999999
Q ss_pred cCCeEEEEeCCEEEEEEeccCcccCCCCeEEEec
Q 044197 151 LDHIKAHMENGILRVTEPKLAEEKKRQPKVINID 184 (202)
Q Consensus 151 ~~~I~A~~~~GvL~I~iPK~~~~~~~~~r~I~I~ 184 (202)
.++ |+|+||||+|++||..++ .+++|+|+|+
T Consensus 107 ~~~--A~~~dGVL~I~lPK~~~~-~~~~r~I~I~ 137 (137)
T PRK10743 107 VRG--ANLVNGLLYIDLERVIPE-AKKPRRIEIN 137 (137)
T ss_pred cCc--CEEeCCEEEEEEeCCCcc-ccCCeEEeeC
Confidence 994 999999999999997443 4578999985
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.5e-27 Score=182.88 Aligned_cols=108 Identities=39% Similarity=0.632 Sum_probs=99.6
Q ss_pred cccceeEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCc
Q 044197 71 ALARADLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSAD 150 (202)
Q Consensus 71 ~~p~idv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd 150 (202)
..|++||+++++.|+|+++|||++++||+|++++ +.|+|+|++.. +...++..++++|+.+|.|+|+|.||..||
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~----~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~ 113 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREE----EEEEEEEGYLRRERAYGEFERTFRLPEKVD 113 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEecc----cccccCCceEEEEEEeeeEEEEEECccccc
Confidence 5789999999999999999999999999999999 88999999987 456788899999999999999999999999
Q ss_pred cCCeEEEEeCCEEEEEEeccCcccCCCCeEEEec
Q 044197 151 LDHIKAHMENGILRVTEPKLAEEKKRQPKVINID 184 (202)
Q Consensus 151 ~~~I~A~~~~GvL~I~iPK~~~~~~~~~r~I~I~ 184 (202)
.+.++|+|+||+|+|++||..++ ..++++|.|+
T Consensus 114 ~~~~~A~~~nGvL~I~lpk~~~~-~~~~~~i~I~ 146 (146)
T COG0071 114 PEVIKAKYKNGLLTVTLPKAEPE-EKKPKRIEIE 146 (146)
T ss_pred ccceeeEeeCcEEEEEEeccccc-cccCceeecC
Confidence 99999999999999999999876 3467888874
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.94 E-value=2.6e-26 Score=166.42 Aligned_cols=92 Identities=57% Similarity=0.962 Sum_probs=85.2
Q ss_pred ceeEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCC
Q 044197 74 RADLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDH 153 (202)
Q Consensus 74 ~idv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~ 153 (202)
++||+|++++|+|.++|||++++||+|++++++.|+|+|++.. +...++..++++|+.+|+|+|+|.||.+||.++
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~----~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~ 76 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKK----EEEKKGDDWHRVERSSGRFVRRFRLPENADADE 76 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecc----cccccCCCEEEEEEeccEEEEEEECCCCCCHHH
Confidence 4799999999999999999999999999987468999999876 344567889999999999999999999999999
Q ss_pred eEEEEeCCEEEEEEec
Q 044197 154 IKAHMENGILRVTEPK 169 (202)
Q Consensus 154 I~A~~~~GvL~I~iPK 169 (202)
|+|+|+||+|+|++||
T Consensus 77 i~A~~~nGvL~I~lPK 92 (92)
T cd06472 77 VKAFLENGVLTVTVPK 92 (92)
T ss_pred CEEEEECCEEEEEecC
Confidence 9999999999999998
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.92 E-value=1.7e-24 Score=158.99 Aligned_cols=102 Identities=41% Similarity=0.698 Sum_probs=85.4
Q ss_pred eEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeE
Q 044197 76 DLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIK 155 (202)
Q Consensus 76 dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~ 155 (202)
||++++++|.|.++|||+++++|+|++++ +.|+|+|++.. ...+..++..|++++.|.|+|.||.++|.++|+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~-~~L~I~g~~~~------~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~ 73 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDD-NKLVISGKRKE------EEEDDRYYRSERRYGSFERSIRLPEDVDPDKIK 73 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEET-TEEEEEEEEEG------EECTTCEEEE-S-SEEEEEEEE-STTB-GGG-E
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEec-Cccceeceeee------eeeeeeeeecccccceEEEEEcCCCcCCcceEE
Confidence 79999999999999999999999999999 78999999973 345677788899999999999999999999999
Q ss_pred EEEeCCEEEEEEeccCcccCCCCeEEEec
Q 044197 156 AHMENGILRVTEPKLAEEKKRQPKVINID 184 (202)
Q Consensus 156 A~~~~GvL~I~iPK~~~~~~~~~r~I~I~ 184 (202)
|.|+||+|+|++||....+...+++|+|+
T Consensus 74 a~~~~GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 74 ASYENGVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEETTSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred EEecCCEEEEEEEccccccCCCCeEEEeC
Confidence 99999999999999987755578999985
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.92 E-value=1.1e-24 Score=158.02 Aligned_cols=92 Identities=34% Similarity=0.632 Sum_probs=83.0
Q ss_pred ceeEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCC
Q 044197 74 RADLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDH 153 (202)
Q Consensus 74 ~idv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~ 153 (202)
++||+|++++|+|.++|||++++||+|++++ +.|+|+|++.... +....+..|+++|+.+|+|.|+|.|| ++|.++
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~--~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~ 77 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESK--DEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEE 77 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcccc--ccccccCCEEEEeeeccEEEEEEECC-CCCHHH
Confidence 6899999999999999999999999999999 8999999997621 12233457999999999999999999 799999
Q ss_pred eEEEEeCCEEEEEEec
Q 044197 154 IKAHMENGILRVTEPK 169 (202)
Q Consensus 154 I~A~~~~GvL~I~iPK 169 (202)
|+|+|+||+|+|++||
T Consensus 78 i~A~~~dGvL~I~lPK 93 (93)
T cd06471 78 IKAKYENGVLKITLPK 93 (93)
T ss_pred CEEEEECCEEEEEEcC
Confidence 9999999999999998
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.91 E-value=1.2e-23 Score=151.97 Aligned_cols=89 Identities=26% Similarity=0.425 Sum_probs=81.1
Q ss_pred cceeEEEcC-CeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCcc
Q 044197 73 ARADLMETP-TAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADL 151 (202)
Q Consensus 73 p~idv~e~~-~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~ 151 (202)
|++||.+++ ++|+|.++|||++++||+|.+++ +.|+|+|+++. +.. .+.+|+++|+.+|+|.|+|.||.++|.
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~~----~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~ 74 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVEN-NQLTVTGKKAD----EEN-EEREYLHRGIAKRAFERSFNLADHVKV 74 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcc----ccc-CCCcEEEEEEeceEEEEEEECCCCceE
Confidence 578999975 89999999999999999999999 89999999987 332 677899999999999999999999987
Q ss_pred CCeEEEEeCCEEEEEEec
Q 044197 152 DHIKAHMENGILRVTEPK 169 (202)
Q Consensus 152 ~~I~A~~~~GvL~I~iPK 169 (202)
. +|+|+||+|+|++|+
T Consensus 75 ~--~A~~~~GvL~I~l~~ 90 (90)
T cd06470 75 K--GAELENGLLTIDLER 90 (90)
T ss_pred C--eeEEeCCEEEEEEEC
Confidence 5 899999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.90 E-value=5.2e-23 Score=147.67 Aligned_cols=82 Identities=20% Similarity=0.476 Sum_probs=73.9
Q ss_pred eEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeE
Q 044197 76 DLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIK 155 (202)
Q Consensus 76 dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~ 155 (202)
+|++++++|.|.++||||+++||+|++++ +.|+|+|++.. + .++..|+++| |+|+|.||++||.++|+
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~----~--~~~~~~~~~e-----f~R~~~LP~~Vd~~~i~ 71 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSE----R--QDDHGYISRE-----FHRRYRLPSNVDQSAIT 71 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcc----e--eCCCCEEEEE-----EEEEEECCCCCChHHeE
Confidence 79999999999999999999999999999 89999999754 2 2345676655 99999999999999999
Q ss_pred EEE-eCCEEEEEEec
Q 044197 156 AHM-ENGILRVTEPK 169 (202)
Q Consensus 156 A~~-~~GvL~I~iPK 169 (202)
|+| +||+|+|++||
T Consensus 72 A~~~~dGvL~I~~PK 86 (86)
T cd06497 72 CSLSADGMLTFSGPK 86 (86)
T ss_pred EEeCCCCEEEEEecC
Confidence 999 89999999998
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.89 E-value=1.9e-22 Score=143.82 Aligned_cols=82 Identities=17% Similarity=0.453 Sum_probs=72.6
Q ss_pred eEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeE
Q 044197 76 DLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIK 155 (202)
Q Consensus 76 dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~ 155 (202)
+|.+++++|+|.++||||+++||+|++++ +.|+|+|++.. + .++..|+++| |+|+|.||.+||.++|+
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~----~--~~~~~~~~~e-----f~R~~~LP~~vd~~~i~ 68 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEE----R--QDEHGFISRE-----FHRRYRLPPGVDPAAIT 68 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEce----E--cCCCCEEEEE-----EEEEEECCCCcChHHeE
Confidence 47899999999999999999999999999 89999998754 2 2344566654 99999999999999999
Q ss_pred EEE-eCCEEEEEEec
Q 044197 156 AHM-ENGILRVTEPK 169 (202)
Q Consensus 156 A~~-~~GvL~I~iPK 169 (202)
|+| +||+|+|++||
T Consensus 69 A~~~~dGvL~I~~PK 83 (83)
T cd06478 69 SSLSADGVLTISGPR 83 (83)
T ss_pred EEECCCCEEEEEecC
Confidence 999 79999999998
No 10
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.88 E-value=1.6e-22 Score=143.53 Aligned_cols=79 Identities=13% Similarity=0.356 Sum_probs=72.0
Q ss_pred eEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeE
Q 044197 76 DLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIK 155 (202)
Q Consensus 76 dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~ 155 (202)
||.|++++|+|.++||||+|+||+|++++ +.|+|+|+++. +. + ..+|+|+|+|.||.+||.++|+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~----~~---~-------~~~g~F~R~~~LP~~vd~e~v~ 66 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLA----SD---G-------TVMNTFTHKCQLPEDVDPTSVS 66 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEec----cC---C-------CEEEEEEEEEECCCCcCHHHeE
Confidence 68999999999999999999999999999 89999999865 21 1 2478999999999999999999
Q ss_pred EEE-eCCEEEEEEec
Q 044197 156 AHM-ENGILRVTEPK 169 (202)
Q Consensus 156 A~~-~~GvL~I~iPK 169 (202)
|+| +||+|+|++++
T Consensus 67 A~l~~~GvL~I~~~~ 81 (81)
T cd06479 67 SSLGEDGTLTIKARR 81 (81)
T ss_pred EEecCCCEEEEEecC
Confidence 998 99999999985
No 11
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.88 E-value=6e-22 Score=141.53 Aligned_cols=82 Identities=18% Similarity=0.437 Sum_probs=71.9
Q ss_pred EEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeEE
Q 044197 77 LMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIKA 156 (202)
Q Consensus 77 v~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~A 156 (202)
+.+++++|.|+++||||+++||+|++++ +.|+|+|++.. +. ++..|+++ .|+|+|.||.+||.++|+|
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~----~~--~~~~~~~~-----eF~R~~~LP~~vd~~~i~A 69 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEE----RQ--DEHGFISR-----EFQRKYRIPADVDPLTITS 69 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcc----ee--CCCCEEEE-----EEEEEEECCCCCChHHcEE
Confidence 6788999999999999999999999999 89999998754 22 34456644 4999999999999999999
Q ss_pred EEe-CCEEEEEEecc
Q 044197 157 HME-NGILRVTEPKL 170 (202)
Q Consensus 157 ~~~-~GvL~I~iPK~ 170 (202)
+|. ||+|+|++||+
T Consensus 70 ~~~~dGvL~I~lPk~ 84 (84)
T cd06498 70 SLSPDGVLTVCGPRK 84 (84)
T ss_pred EeCCCCEEEEEEeCC
Confidence 995 99999999985
No 12
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.86 E-value=2.5e-21 Score=138.04 Aligned_cols=81 Identities=20% Similarity=0.418 Sum_probs=69.8
Q ss_pred EEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeEE
Q 044197 77 LMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIKA 156 (202)
Q Consensus 77 v~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~A 156 (202)
+..++++|.|.++||||+++||+|++.+ +.|+|+|++.. . .+...++++ .|+|+|.||.+||.++|+|
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~----~--~~~~~~~~~-----eF~R~~~LP~~vd~~~v~A 69 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQ----R--MDRHGFVSR-----EFTRTYILPMDVDPLLVRA 69 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcc----e--ecCCCEEEE-----EEEEEEECCCCCChhhEEE
Confidence 4467889999999999999999999999 89999999854 2 223345543 4999999999999999999
Q ss_pred EEe-CCEEEEEEec
Q 044197 157 HME-NGILRVTEPK 169 (202)
Q Consensus 157 ~~~-~GvL~I~iPK 169 (202)
+|. ||+|+|++||
T Consensus 70 ~~~~dGvL~I~~Pr 83 (83)
T cd06476 70 SLSHDGILCIQAPR 83 (83)
T ss_pred EecCCCEEEEEecC
Confidence 995 9999999997
No 13
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.86 E-value=3.9e-21 Score=137.91 Aligned_cols=82 Identities=18% Similarity=0.449 Sum_probs=71.9
Q ss_pred eeEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCe
Q 044197 75 ADLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHI 154 (202)
Q Consensus 75 idv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I 154 (202)
.||+|++++|.|+++||||++++|+|++.+ +.|+|+|++.. ++ +...+. .++|+|+|.||.+||.++|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~----~~--~~~~~~-----~~~f~R~f~LP~~vd~~~v 70 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHEE----KQ--DEHGFV-----SRCFTRKYTLPPGVDPTAV 70 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECc----Cc--CCCCEE-----EEEEEEEEECCCCCCHHHc
Confidence 589999999999999999999999999999 79999999865 22 222333 3479999999999999999
Q ss_pred EEEEe-CCEEEEEEe
Q 044197 155 KAHME-NGILRVTEP 168 (202)
Q Consensus 155 ~A~~~-~GvL~I~iP 168 (202)
+|.|. ||+|+|++|
T Consensus 71 ~A~~~~dGvL~I~lP 85 (86)
T cd06475 71 TSSLSPDGILTVEAP 85 (86)
T ss_pred EEEECCCCeEEEEec
Confidence 99996 999999998
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.86 E-value=3e-21 Score=138.76 Aligned_cols=83 Identities=22% Similarity=0.484 Sum_probs=72.2
Q ss_pred EcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeEEEE
Q 044197 79 ETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIKAHM 158 (202)
Q Consensus 79 e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~A~~ 158 (202)
+..++|.|.++||||+++||+|++++ +.|+|+|++.. +.......|. +.+|+|.|+|.||.+||.++|+|+|
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~----~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~ 75 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREK----KNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSL 75 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEee----ecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEe
Confidence 56789999999999999999999999 89999999876 2333334444 4589999999999999999999999
Q ss_pred -eCCEEEEEEec
Q 044197 159 -ENGILRVTEPK 169 (202)
Q Consensus 159 -~~GvL~I~iPK 169 (202)
+||+|+|++|+
T Consensus 76 ~~dGvL~I~~P~ 87 (87)
T cd06481 76 SPSGHLHIRAPR 87 (87)
T ss_pred CCCceEEEEcCC
Confidence 99999999995
No 15
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.85 E-value=6.3e-21 Score=136.98 Aligned_cols=81 Identities=20% Similarity=0.443 Sum_probs=70.2
Q ss_pred cCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeEEEEe
Q 044197 80 TPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIKAHME 159 (202)
Q Consensus 80 ~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~A~~~ 159 (202)
+++.|+|+++|||++++||+|++++ +.|+|+|+++. +++..+ ..||++|+|.|+|.||.+||.++|+|+|+
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~-~~L~I~ger~~----~~e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~ 76 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKD-GKVQVSAEREN----RYDCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYG 76 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEec----ccccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEc
Confidence 5789999999999999999999999 89999999976 222111 24789999999999999999999999997
Q ss_pred CC-EEEEEEec
Q 044197 160 NG-ILRVTEPK 169 (202)
Q Consensus 160 ~G-vL~I~iPK 169 (202)
|| +|+|.-|.
T Consensus 77 ~~~~l~i~~~~ 87 (87)
T cd06482 77 LGSVVKIETPC 87 (87)
T ss_pred CCCEEEEeeCC
Confidence 65 99999873
No 16
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.85 E-value=1.5e-20 Score=133.29 Aligned_cols=88 Identities=49% Similarity=0.809 Sum_probs=80.2
Q ss_pred eEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeE
Q 044197 76 DLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIK 155 (202)
Q Consensus 76 dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~ 155 (202)
++.|++++|+|.++|||+++++|+|++.+ +.|.|+|++... .... ..+...++.+|.|.|+|.||.++|.++++
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~~----~~~~-~~~~~~~~~~~~f~r~~~LP~~vd~~~i~ 74 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEE----EEEE-ENYLRRERSYGSFSRSFRLPEDVDPDKIK 74 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecc----cccC-CcEEEEEEeCcEEEEEEECCCCcCHHHcE
Confidence 47899999999999999999999999999 899999999872 2222 27888999999999999999999999999
Q ss_pred EEEeCCEEEEEEec
Q 044197 156 AHMENGILRVTEPK 169 (202)
Q Consensus 156 A~~~~GvL~I~iPK 169 (202)
|.|.||+|+|++||
T Consensus 75 a~~~~G~L~I~~pk 88 (88)
T cd06464 75 ASLENGVLTITLPK 88 (88)
T ss_pred EEEeCCEEEEEEcC
Confidence 99999999999997
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.84 E-value=3.1e-20 Score=132.32 Aligned_cols=79 Identities=23% Similarity=0.385 Sum_probs=68.4
Q ss_pred EEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeEEE
Q 044197 78 METPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIKAH 157 (202)
Q Consensus 78 ~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~A~ 157 (202)
-|++++|+|+++||||+++||+|++++ +.|+|+|++.. +. .+..+. .++|+|+|.||.+||.++|+|+
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~----~~--~~~~~~-----~r~F~R~~~LP~~Vd~~~v~A~ 70 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGV----RM--DEHGFI-----SRSFTRQYQLPDGVEHKDLSAM 70 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcc----cc--CCCCEE-----EEEEEEEEECCCCcchheEEEE
Confidence 378899999999999999999999999 89999999866 22 223343 2379999999999999999999
Q ss_pred E-eCCEEEEEEe
Q 044197 158 M-ENGILRVTEP 168 (202)
Q Consensus 158 ~-~~GvL~I~iP 168 (202)
| +||||+|+.|
T Consensus 71 ~~~dGvL~I~~~ 82 (83)
T cd06477 71 LCHDGILVVETK 82 (83)
T ss_pred EcCCCEEEEEec
Confidence 8 8999999976
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.83 E-value=3.1e-20 Score=132.12 Aligned_cols=77 Identities=26% Similarity=0.541 Sum_probs=67.7
Q ss_pred CCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeEEEEeC
Q 044197 81 PTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIKAHMEN 160 (202)
Q Consensus 81 ~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~A~~~~ 160 (202)
+++|.|.++||||+++||+|++++ +.|+|+|+++. ... .. ++.+++|.|+|.||.+||.++|+|+|.|
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~----~~~--~~-----~~~~~~f~r~~~LP~~vd~~~i~A~~~~ 73 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEE----RED--EH-----GYVSREFTRRYQLPEGVDPDSVTSSLSS 73 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEee----ecc--CC-----CEEEEEEEEEEECCCCCChHHeEEEeCC
Confidence 469999999999999999999999 89999999876 211 12 2346889999999999999999999988
Q ss_pred -CEEEEEEec
Q 044197 161 -GILRVTEPK 169 (202)
Q Consensus 161 -GvL~I~iPK 169 (202)
|+|+|++||
T Consensus 74 ~GvL~I~~Pk 83 (83)
T cd06526 74 DGVLTIEAPK 83 (83)
T ss_pred CcEEEEEecC
Confidence 999999997
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.2e-18 Score=141.24 Aligned_cols=111 Identities=47% Similarity=0.789 Sum_probs=94.4
Q ss_pred cccceeEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCc
Q 044197 71 ALARADLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSAD 150 (202)
Q Consensus 71 ~~p~idv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd 150 (202)
+.++++|.+.++.|++.+++||+.+++|+|.++++++|+|+|+++.+. ++......|+..|+.+|.|.|++.||++++
T Consensus 83 ~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~--e~~~~~~~~~~~E~~~g~F~r~~~lPenv~ 160 (196)
T KOG0710|consen 83 ARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEE--EESGSGKKWKRVERKLGKFKRRFELPENVD 160 (196)
T ss_pred ccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEeccccccc--ccccCCccceeehhcccceEeeecCCcccc
Confidence 446688999999999999999999999999999956899999998832 222367788999999999999999999999
Q ss_pred cCCeEEEEeCCEEEEEEeccCcc-cCCCCeEEEe
Q 044197 151 LDHIKAHMENGILRVTEPKLAEE-KKRQPKVINI 183 (202)
Q Consensus 151 ~~~I~A~~~~GvL~I~iPK~~~~-~~~~~r~I~I 183 (202)
.+.|+|.|+||||+|++||..+. +....+.|.|
T Consensus 161 ~d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i 194 (196)
T KOG0710|consen 161 VDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAI 194 (196)
T ss_pred HHHHHHHhhCCeEEEEEecccccccCCccceeec
Confidence 99999999999999999999773 2333444444
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.73 E-value=2.8e-17 Score=118.93 Aligned_cols=80 Identities=14% Similarity=0.329 Sum_probs=69.5
Q ss_pred EEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeEE
Q 044197 77 LMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIKA 156 (202)
Q Consensus 77 v~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~A 156 (202)
+..++++|.|.+|+.||+++||+|++.+ +.|+|+|++.. +. .+..+. .++|+|+|.||++||.+.|+|
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~----~~--~e~g~~-----~r~F~R~~~LP~~Vd~~~v~s 77 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEE----QQ--KEGGIV-----SKNFTKKIQLPPEVDPVTVFA 77 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECc----cc--CCCCEE-----EEEEEEEEECCCCCCchhEEE
Confidence 4567889999999999999999999999 89999999876 22 223444 367999999999999999999
Q ss_pred EEe-CCEEEEEEe
Q 044197 157 HME-NGILRVTEP 168 (202)
Q Consensus 157 ~~~-~GvL~I~iP 168 (202)
+|. ||+|+|.+|
T Consensus 78 ~l~~dGvL~IeaP 90 (91)
T cd06480 78 SLSPEGLLIIEAP 90 (91)
T ss_pred EeCCCCeEEEEcC
Confidence 996 999999998
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.1e-16 Score=126.91 Aligned_cols=105 Identities=16% Similarity=0.419 Sum_probs=90.7
Q ss_pred cceeEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccC
Q 044197 73 ARADLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLD 152 (202)
Q Consensus 73 p~idv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~ 152 (202)
...++..++++|.|.+|+..|+|++|+|++.| +.|.|+|++.. ..++.++.. ++|.|+|.||++||++
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHee------r~d~~G~v~-----R~F~R~y~LP~~vdp~ 130 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEE------KEDEHGYVS-----RSFVRKYLLPEDVDPT 130 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCC-CEEEEEeeecc------ccCCCCeEE-----EEEEEEecCCCCCChh
Confidence 45789999999999999999999999999999 79999999865 335555654 3499999999999999
Q ss_pred CeEEEE-eCCEEEEEEeccCcccCCCCeEEEecCCCCCC
Q 044197 153 HIKAHM-ENGILRVTEPKLAEEKKRQPKVINIDEESGNS 190 (202)
Q Consensus 153 ~I~A~~-~~GvL~I~iPK~~~~~~~~~r~I~I~~~~~~~ 190 (202)
+|++.+ .||+|+|++||..... ...|.|+|+..+..+
T Consensus 131 ~V~S~LS~dGvLtI~ap~~~~~~-~~er~ipI~~~~~~~ 168 (173)
T KOG3591|consen 131 SVTSTLSSDGVLTIEAPKPPPKQ-DNERSIPIEQVGPSA 168 (173)
T ss_pred heEEeeCCCceEEEEccCCCCcC-ccceEEeEeecCccc
Confidence 999999 8999999999997652 258999999887754
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.55 E-value=5.9e-14 Score=95.88 Aligned_cols=80 Identities=43% Similarity=0.760 Sum_probs=71.2
Q ss_pred EEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeEE
Q 044197 77 LMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIKA 156 (202)
Q Consensus 77 v~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~A 156 (202)
|+++++.|.|++++||+.+++|+|.+.+ +.|.|+|++... .. .+...+.|.+.+.||..+|+++++|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~----~~--------~~~~~~~~~~~~~L~~~i~~~~~~~ 67 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEE----EE--------RERSYGEFERSFELPEDVDPEKSKA 67 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCC----Cc--------ceEeeeeEEEEEECCCCcCHHHCEE
Confidence 4688899999999999999999999999 899999998662 11 3445678999999999999999999
Q ss_pred EEeCCEEEEEEec
Q 044197 157 HMENGILRVTEPK 169 (202)
Q Consensus 157 ~~~~GvL~I~iPK 169 (202)
.+.+|+|+|.+||
T Consensus 68 ~~~~~~l~i~l~K 80 (80)
T cd00298 68 SLENGVLEITLPK 80 (80)
T ss_pred EEECCEEEEEEcC
Confidence 9999999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.31 E-value=1.6e-11 Score=85.48 Aligned_cols=71 Identities=21% Similarity=0.257 Sum_probs=64.5
Q ss_pred EEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeEE
Q 044197 77 LMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIKA 156 (202)
Q Consensus 77 v~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~A 156 (202)
|+++++.+.|++++||+++++++|++++ +.|.|+| .. |.+.+.||..||+++.++
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~--~~----------------------~~~~~~l~~~I~~e~~~~ 55 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNF--PP----------------------YLFELDLAAPIDDEKSSA 55 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEec-CEEEEcC--CC----------------------EEEEEeCcccccccccEE
Confidence 4688999999999999999999999999 7888876 22 888999999999999999
Q ss_pred EEeCCEEEEEEeccCc
Q 044197 157 HMENGILRVTEPKLAE 172 (202)
Q Consensus 157 ~~~~GvL~I~iPK~~~ 172 (202)
.+.+|.|.|+++|.++
T Consensus 56 ~~~~~~l~i~L~K~~~ 71 (78)
T cd06469 56 KIGNGVLVFTLVKKEP 71 (78)
T ss_pred EEeCCEEEEEEEeCCC
Confidence 9999999999999854
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.01 E-value=3.5e-09 Score=73.53 Aligned_cols=76 Identities=20% Similarity=0.171 Sum_probs=66.6
Q ss_pred EEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeEE
Q 044197 77 LMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIKA 156 (202)
Q Consensus 77 v~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~A 156 (202)
++++++.+.|.+.+||..+++++|.+.+ +.|.|++.... .+.|...+.|+..|++++.++
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~~-------------------~~~~~~~~~L~~~I~~~~s~~ 60 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGGG-------------------GKEYLLEGELFGPIDPEESKW 60 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCCC-------------------CCceEEeeEccCccchhhcEE
Confidence 4678899999999999999999999999 78999987531 123778889999999999999
Q ss_pred EEeCCEEEEEEeccCc
Q 044197 157 HMENGILRVTEPKLAE 172 (202)
Q Consensus 157 ~~~~GvL~I~iPK~~~ 172 (202)
.+.+|.|.|+++|..+
T Consensus 61 ~~~~~~l~i~L~K~~~ 76 (84)
T cd06463 61 TVEDRKIEITLKKKEP 76 (84)
T ss_pred EEeCCEEEEEEEECCC
Confidence 9999999999999864
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.00 E-value=3.3e-09 Score=84.95 Aligned_cols=79 Identities=20% Similarity=0.404 Sum_probs=62.7
Q ss_pred cccceeEEEcCC-eEEEEEEeCCCCccc-eEEEEEe-CeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCC
Q 044197 71 ALARADLMETPT-AHVITLDILGMKKDN-VKIEVEE-NRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPM 147 (202)
Q Consensus 71 ~~p~idv~e~~~-~y~i~~dlPG~~~ed-I~V~v~~-~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~ 147 (202)
..+.+++.+.++ ..+|.++|||+++++ |+|.++. .+.|+|+ ... .+.+++.||.
T Consensus 90 ~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~--~~~---------------------~~~krv~L~~ 146 (177)
T PF05455_consen 90 ESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIR--VGE---------------------KYLKRVALPW 146 (177)
T ss_pred ceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEe--cCC---------------------ceEeeEecCC
Confidence 356789999888 699999999999888 9999985 2445553 322 1557899996
Q ss_pred CCccCCeEEEEeCCEEEEEEeccCcc
Q 044197 148 SADLDHIKAHMENGILRVTEPKLAEE 173 (202)
Q Consensus 148 ~vd~~~I~A~~~~GvL~I~iPK~~~~ 173 (202)
. +.+.+++.|+||||+|++-+..+.
T Consensus 147 ~-~~e~~~~t~nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 147 P-DPEITSATFNNGILEIRIRRTEES 171 (177)
T ss_pred C-ccceeeEEEeCceEEEEEeecCCC
Confidence 6 688999999999999999988653
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.78 E-value=5e-08 Score=68.56 Aligned_cols=77 Identities=21% Similarity=0.191 Sum_probs=66.8
Q ss_pred eEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeE
Q 044197 76 DLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIK 155 (202)
Q Consensus 76 dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~ 155 (202)
||+++++...|.+.+||+.+++++|.+++ +.|.|++.... .+.|...+.|+..|+++..+
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~~-------------------~~~~~~~~~L~~~I~~~~s~ 60 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILPG-------------------GSEYQLELDLFGPIDPEQSK 60 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECCC-------------------CCeEEEecccccccCchhcE
Confidence 67899999999999999999999999999 78999876421 11267778999999999999
Q ss_pred EEEeCCEEEEEEeccCc
Q 044197 156 AHMENGILRVTEPKLAE 172 (202)
Q Consensus 156 A~~~~GvL~I~iPK~~~ 172 (202)
+.+.+|.|.|++.|...
T Consensus 61 ~~~~~~~vei~L~K~~~ 77 (84)
T cd06466 61 VSVLPTKVEITLKKAEP 77 (84)
T ss_pred EEEeCeEEEEEEEcCCC
Confidence 99999999999999864
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.45 E-value=7.9e-06 Score=56.01 Aligned_cols=77 Identities=18% Similarity=0.238 Sum_probs=63.6
Q ss_pred cceeEEEcCCeEEEEEEeCCC--CccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCc
Q 044197 73 ARADLMETPTAHVITLDILGM--KKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSAD 150 (202)
Q Consensus 73 p~idv~e~~~~y~i~~dlPG~--~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd 150 (202)
|+++|+++++...|.+.+++. ++++|+|.+++ +.|.|+..... + . .|...+.|...|+
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~~--------~-~----------~~~~~~~L~~~I~ 60 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSGD--------G-K----------EYLLEGELFGEID 60 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEETT--------S-C----------EEEEEEEBSS-BE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEccC--------C-c----------eEEEEEEEeeeEc
Confidence 568999999999999999655 59999999999 78999876533 1 1 2666788999999
Q ss_pred cCCeEEEEeCCEEEEEEec
Q 044197 151 LDHIKAHMENGILRVTEPK 169 (202)
Q Consensus 151 ~~~I~A~~~~GvL~I~iPK 169 (202)
++..+..+.++.|.|++.|
T Consensus 61 ~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 61 PDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp CCCEEEEEETTEEEEEEEB
T ss_pred chhcEEEEECCEEEEEEEC
Confidence 9999999999999999987
No 28
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.08 E-value=1.7e-05 Score=69.09 Aligned_cols=65 Identities=25% Similarity=0.481 Sum_probs=57.1
Q ss_pred CCeEEEEEEeCCC-CccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeEEEEe
Q 044197 81 PTAHVITLDILGM-KKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIKAHME 159 (202)
Q Consensus 81 ~~~y~i~~dlPG~-~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~A~~~ 159 (202)
.+.++|+++|||+ +..+|+|.|.+ ..|.|...... |.-.+.||..||.+..+|.|+
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~~~----------------------y~L~l~LP~~V~~~~~~Akf~ 316 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSE-DRLSLSSPKPK----------------------YRLDLPLPYPVDEDNGKAKFD 316 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeC-CEEEEEeCCCc----------------------eEEEccCCCcccCCCceEEEc
Confidence 5789999999999 78999999999 78888866432 667799999999999999994
Q ss_pred --CCEEEEEEe
Q 044197 160 --NGILRVTEP 168 (202)
Q Consensus 160 --~GvL~I~iP 168 (202)
.++|+|++|
T Consensus 317 ~~~~~L~vtlp 327 (328)
T PF08190_consen 317 KKTKTLTVTLP 327 (328)
T ss_pred cCCCEEEEEEE
Confidence 589999998
No 29
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.02 E-value=8.3e-05 Score=54.97 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=65.7
Q ss_pred cceeEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccC
Q 044197 73 ARADLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLD 152 (202)
Q Consensus 73 p~idv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~ 152 (202)
|+++++++.+...|++.+||. ++++|.++. +.|.|++.... ++. .|...+.|...|+++
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~~--------~~~----------~y~~~~~L~~~I~pe 59 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKGGG--------GGK----------KYEFDLEFYKEIDPE 59 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEcCC--------CCe----------eEEEEeEhhhhcccc
Confidence 468999999999999999998 889999999 78999885321 111 155567899999999
Q ss_pred CeEEEEeCCEEEEEEeccC
Q 044197 153 HIKAHMENGILRVTEPKLA 171 (202)
Q Consensus 153 ~I~A~~~~GvL~I~iPK~~ 171 (202)
..+..+.++.|.|++.|..
T Consensus 60 ~s~~~v~~~kveI~L~K~~ 78 (108)
T cd06465 60 ESKYKVTGRQIEFVLRKKE 78 (108)
T ss_pred ccEEEecCCeEEEEEEECC
Confidence 9999999999999999986
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.00 E-value=6.5e-05 Score=52.95 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=64.3
Q ss_pred eEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeE
Q 044197 76 DLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIK 155 (202)
Q Consensus 76 dv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~ 155 (202)
||+++++...|++.++|+.++++.|.+++ +.|.+++.... +. .|.-.+.|...|++++.+
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~~---------~~----------~y~~~~~L~~~I~p~~s~ 60 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLPS---------GN----------DYSLKLHLLHPIVPEQSS 60 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECCC---------CC----------cEEEeeecCceecchhcE
Confidence 67899999999999999999999999999 78999876422 11 145567899999999888
Q ss_pred EEEeCCEEEEEEeccCc
Q 044197 156 AHMENGILRVTEPKLAE 172 (202)
Q Consensus 156 A~~~~GvL~I~iPK~~~ 172 (202)
.....+-+.|.+.|.+.
T Consensus 61 ~~v~~~kiei~L~K~~~ 77 (84)
T cd06489 61 YKILSTKIEIKLKKTEA 77 (84)
T ss_pred EEEeCcEEEEEEEcCCC
Confidence 88889999999999853
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.89 E-value=0.00013 Score=51.13 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=60.5
Q ss_pred eEEEcCCeEEEEEEeC-CCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCe
Q 044197 76 DLMETPTAHVITLDIL-GMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHI 154 (202)
Q Consensus 76 dv~e~~~~y~i~~dlP-G~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I 154 (202)
.+.++++...|++.+| |+.++||+|.+.+ +.|.|+..... +.-.-.|...||++..
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~~~----------------------~~l~~~L~~~I~~~~s 58 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKGGE----------------------PLLDGELYAKVKVDES 58 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECCCC----------------------ceEcCcccCceeEcCC
Confidence 5789999999999998 8899999999999 78888864211 1112357889999998
Q ss_pred EEEEeC-CEEEEEEeccCc
Q 044197 155 KAHMEN-GILRVTEPKLAE 172 (202)
Q Consensus 155 ~A~~~~-GvL~I~iPK~~~ 172 (202)
+-.+.+ ..|.|+++|.++
T Consensus 59 ~w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 59 TWTLEDGKLLEITLEKRNE 77 (85)
T ss_pred EEEEeCCCEEEEEEEECCC
Confidence 888999 999999999864
No 32
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.75 E-value=0.00051 Score=48.92 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=65.5
Q ss_pred ceeEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCC
Q 044197 74 RADLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDH 153 (202)
Q Consensus 74 ~idv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~ 153 (202)
+.||+++++...|++.+.|+.++++++.+++ +.|.|+..... +. .|.-.+.|-..|+++.
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~~---------~~----------~y~~~l~L~~~I~~~~ 61 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFEG---------NK----------EFQLDIELWGVIDVEK 61 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECCC---------Cc----------eEEEEeeccceEChhH
Confidence 4689999999999999999999999999988 77888754321 10 1566678989999999
Q ss_pred eEEEEeCCEEEEEEeccCc
Q 044197 154 IKAHMENGILRVTEPKLAE 172 (202)
Q Consensus 154 I~A~~~~GvL~I~iPK~~~ 172 (202)
.+.....+-+.|++.|.++
T Consensus 62 s~~~v~~~kvei~L~K~~~ 80 (87)
T cd06488 62 SSVNMLPTKVEIKLRKAEP 80 (87)
T ss_pred cEEEecCcEEEEEEEeCCC
Confidence 8888889999999999864
No 33
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.66 E-value=0.0006 Score=48.25 Aligned_cols=75 Identities=13% Similarity=0.133 Sum_probs=58.9
Q ss_pred eeEEEcCCeEEEEEEeC-CCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCC
Q 044197 75 ADLMETPTAHVITLDIL-GMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDH 153 (202)
Q Consensus 75 idv~e~~~~y~i~~dlP-G~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~ 153 (202)
++++++.+...|.+.+| |+.++|++|.++. +.|.|...... . + ..-.|...|+++.
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~~~~-----------~----------~-~~g~L~~~I~~d~ 57 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALKDQA-----------P----------L-LEGKLYSSIDHES 57 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeCCCC-----------e----------E-EeCcccCcccccC
Confidence 36889999999999996 9999999999999 77888652111 0 1 1236788999998
Q ss_pred eEEEEeCC-EEEEEEeccCc
Q 044197 154 IKAHMENG-ILRVTEPKLAE 172 (202)
Q Consensus 154 I~A~~~~G-vL~I~iPK~~~ 172 (202)
-+=.+++| .|.|.+.|.++
T Consensus 58 Stw~i~~~~~l~i~L~K~~~ 77 (85)
T cd06493 58 STWIIKENKSLEVSLIKKDE 77 (85)
T ss_pred cEEEEeCCCEEEEEEEECCC
Confidence 77777777 79999999864
No 34
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.61 E-value=0.0011 Score=47.23 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=63.8
Q ss_pred ceeEEEcCCeEEEEEEeCCCCc---cceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEE-ECCCCC
Q 044197 74 RADLMETPTAHVITLDILGMKK---DNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQF-RMPMSA 149 (202)
Q Consensus 74 ~idv~e~~~~y~i~~dlPG~~~---edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~-~LP~~v 149 (202)
.++|+++++...|.+.+|+..+ ++++|.++. +.|.|++.... +.. |.-.+ .|-..|
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~~~---------~~~----------~~~~~~~L~~~I 62 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHDLN---------GKN----------YRFTINRLLKKI 62 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEECCC---------CcE----------EEEEehHhhCcc
Confidence 4689999999999999999876 999999998 78999874311 111 33344 378999
Q ss_pred ccCCeEEEEeCCEEEEEEeccCc
Q 044197 150 DLDHIKAHMENGILRVTEPKLAE 172 (202)
Q Consensus 150 d~~~I~A~~~~GvL~I~iPK~~~ 172 (202)
+++..+..+..+-+.|++.|.++
T Consensus 63 ~~e~s~~~~~~~ki~i~L~K~~~ 85 (92)
T cd06468 63 DPEKSSFKVKTDRIVITLAKKKE 85 (92)
T ss_pred CccccEEEEeCCEEEEEEEeCCC
Confidence 99999999999999999999864
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.11 E-value=0.0069 Score=43.89 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=60.2
Q ss_pred ccceeEEEcCCeEEEEEEeC-CCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCc
Q 044197 72 LARADLMETPTAHVITLDIL-GMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSAD 150 (202)
Q Consensus 72 ~p~idv~e~~~~y~i~~dlP-G~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd 150 (202)
...++++++.+...|++.+| |.+++|+.|.+.. +.|.|..+- . .+. .| .|...|+
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~~g-~-----------~~l-----~G------~L~~~I~ 60 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGS-RDISLAVKG-Q-----------EVL-----KG------KLFDSVV 60 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEc-CEEEEEECC-E-----------EEE-----cC------cccCccC
Confidence 45689999999999999999 9999999999999 788887421 1 011 12 4678888
Q ss_pred cCCeEEEEeCCE-EEEEEeccC
Q 044197 151 LDHIKAHMENGI-LRVTEPKLA 171 (202)
Q Consensus 151 ~~~I~A~~~~Gv-L~I~iPK~~ 171 (202)
++.-.=.+++|- |.|.+.|..
T Consensus 61 ~destWtled~k~l~I~L~K~~ 82 (93)
T cd06494 61 ADECTWTLEDRKLIRIVLTKSN 82 (93)
T ss_pred cccCEEEEECCcEEEEEEEeCC
Confidence 888777788775 899999985
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.05 E-value=0.013 Score=43.40 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=60.7
Q ss_pred cceeEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccC
Q 044197 73 ARADLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLD 152 (202)
Q Consensus 73 p~idv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~ 152 (202)
|.+++++..+...|++.+|+ .+|++|.+++ +.|.++|... ++.. |.-.+.|=..|+++
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~---------~g~~----------y~~~l~l~~~I~pe 59 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNG---------DNVK----------IYNEIELYDRVDPN 59 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEECC---------CCcE----------EEEEEEeecccCcc
Confidence 67899999999999999999 5899999999 7899998431 1111 33356777889998
Q ss_pred CeEEEEeCCEEEEEEeccCc
Q 044197 153 HIKAHMENGILRVTEPKLAE 172 (202)
Q Consensus 153 ~I~A~~~~GvL~I~iPK~~~ 172 (202)
+-+.....--+.|.+.|.++
T Consensus 60 ~Sk~~v~~r~ve~~L~K~~~ 79 (106)
T cd00237 60 DSKHKRTDRSILCCLRKGKE 79 (106)
T ss_pred cCeEEeCCceEEEEEEeCCC
Confidence 77777766788889999863
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.65 E-value=0.013 Score=52.07 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=67.1
Q ss_pred ccceeEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCcc
Q 044197 72 LARADLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADL 151 (202)
Q Consensus 72 ~p~idv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~ 151 (202)
.++.||+++++..+|.+.+.|+.++++.|.+.+ +.|.|+..... +. .|...+.|-..|++
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~~---------~~----------~y~~~~~L~~~I~p 215 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVPG---------ED----------AYHLQPRLFGKIIP 215 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEecCC---------Cc----------ceeecccccccccc
Confidence 367899999999999999999999999999999 78888865422 11 14445788899999
Q ss_pred CCeEEEEeCCEEEEEEeccCc
Q 044197 152 DHIKAHMENGILRVTEPKLAE 172 (202)
Q Consensus 152 ~~I~A~~~~GvL~I~iPK~~~ 172 (202)
++.+..+.-.-+.|++.|.+.
T Consensus 216 ~~s~~~v~~~Kiei~l~K~~~ 236 (356)
T PLN03088 216 DKCKYEVLSTKIEIRLAKAEP 236 (356)
T ss_pred cccEEEEecceEEEEEecCCC
Confidence 998888888899999999864
No 38
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.33 E-value=0.017 Score=46.72 Aligned_cols=81 Identities=21% Similarity=0.215 Sum_probs=63.7
Q ss_pred ccceeEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCcc
Q 044197 72 LARADLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADL 151 (202)
Q Consensus 72 ~p~idv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~ 151 (202)
.++.|+++++...+|++-.+|+.++|+.|.+.+ ++|.+..+... +.- |.-...|-..|.+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~~---------g~~----------~~l~~~L~~~I~p 62 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLPS---------GSE----------YNLQLKLYHEIIP 62 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecCC---------chh----------hhhhHHhcccccc
Confidence 357899999999999999999999999999998 77777765533 111 3434457788888
Q ss_pred CCeEEEEeCCEEEEEEeccCc
Q 044197 152 DHIKAHMENGILRVTEPKLAE 172 (202)
Q Consensus 152 ~~I~A~~~~GvL~I~iPK~~~ 172 (202)
++.+-..----++|+++|.+.
T Consensus 63 e~~s~k~~stKVEI~L~K~~~ 83 (196)
T KOG1309|consen 63 EKSSFKVFSTKVEITLAKAEI 83 (196)
T ss_pred cceeeEeeeeeEEEEeccccc
Confidence 887777777889999999653
No 39
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.04 E-value=0.089 Score=37.44 Aligned_cols=73 Identities=12% Similarity=0.216 Sum_probs=54.1
Q ss_pred eEEEcCCeEEEEEEeC-C--CCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccC
Q 044197 76 DLMETPTAHVITLDIL-G--MKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLD 152 (202)
Q Consensus 76 dv~e~~~~y~i~~dlP-G--~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~ 152 (202)
.+.++.+...|++.+| | .+..||+|.++. ..|.|.-+.+. .+ + .=.|...|+.+
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~g~~-----------~~---------i--~G~L~~~V~~d 58 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLKGQP-----------PI---------I--DGELYNEVKVE 58 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEec-CEEEEEECCCc-----------eE---------E--eCcccCccccc
Confidence 3567888899999997 4 889999999999 77887542211 01 1 12466888888
Q ss_pred CeEEEEeCC-EEEEEEeccC
Q 044197 153 HIKAHMENG-ILRVTEPKLA 171 (202)
Q Consensus 153 ~I~A~~~~G-vL~I~iPK~~ 171 (202)
.-.=.+++| .|.|++-|..
T Consensus 59 es~Wtled~~~l~i~L~K~~ 78 (87)
T cd06492 59 ESSWLIEDGKVVTVNLEKIN 78 (87)
T ss_pred ccEEEEeCCCEEEEEEEECC
Confidence 777778886 8999999985
No 40
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=95.96 E-value=0.15 Score=36.22 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=53.9
Q ss_pred eeEEEcCCeEEEEEEeCCC--CccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccC
Q 044197 75 ADLMETPTAHVITLDILGM--KKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLD 152 (202)
Q Consensus 75 idv~e~~~~y~i~~dlPG~--~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~ 152 (202)
.||+++++..+|.+..++. .+.++.+.... +.|.|+-.... . .|...+.|=..|+++
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~~-----------~---------~~~~~~~L~~~I~~~ 59 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILGD-----------K---------SYLLHLDLSNEVQWP 59 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECCC-----------c---------eEEEeeeccccCCCC
Confidence 3899999999999999965 44455555555 56877643211 0 156667888888877
Q ss_pred CeEEEEe--CCEEEEEEeccCc
Q 044197 153 HIKAHME--NGILRVTEPKLAE 172 (202)
Q Consensus 153 ~I~A~~~--~GvL~I~iPK~~~ 172 (202)
. +..+. -|-++|++.|.++
T Consensus 60 ~-~~~~~~~~~KVEI~L~K~e~ 80 (87)
T cd06490 60 C-EVRISTETGKIELVLKKKEP 80 (87)
T ss_pred c-EEEEcccCceEEEEEEcCCC
Confidence 5 55554 7899999999864
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=94.20 E-value=1 Score=33.13 Aligned_cols=79 Identities=13% Similarity=0.141 Sum_probs=58.3
Q ss_pred cceeEEEcCCeEEEEEEeC-CC-CccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCc
Q 044197 73 ARADLMETPTAHVITLDIL-GM-KKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSAD 150 (202)
Q Consensus 73 p~idv~e~~~~y~i~~dlP-G~-~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd 150 (202)
..+.+.++.+...|++.+| |. +..||.|.+.. ..|.|.-+... .+..+. .| .|+..|+
T Consensus 5 e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~~--------~~~~~i-----~G------~L~~~V~ 64 (102)
T cd06495 5 ENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDGG--------GEKVLM-----EG------EFTHKIN 64 (102)
T ss_pred CceEEEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecCC--------CCceEE-----eC------cccCccc
Confidence 4578999999999999999 64 67899999999 78888764211 001111 12 4678888
Q ss_pred cCCeEEEEeCC-EEEEEEeccC
Q 044197 151 LDHIKAHMENG-ILRVTEPKLA 171 (202)
Q Consensus 151 ~~~I~A~~~~G-vL~I~iPK~~ 171 (202)
.+.-.=.+++| .|.|++-|..
T Consensus 65 ~des~Wtled~~~l~I~L~K~~ 86 (102)
T cd06495 65 TENSLWSLEPGKCVLLSLSKCS 86 (102)
T ss_pred CccceEEEeCCCEEEEEEEECC
Confidence 88777778886 5899999974
No 42
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=86.85 E-value=9.2 Score=29.35 Aligned_cols=83 Identities=13% Similarity=0.196 Sum_probs=52.3
Q ss_pred cceeEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccC
Q 044197 73 ARADLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLD 152 (202)
Q Consensus 73 p~idv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~ 152 (202)
..+.|...++ ..+++.. ..+.++++.++ +.|.|+.+... ..-...+..... ...-.-.+.||.....+
T Consensus 66 ~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~-~~L~I~~~~~~------~~~~~~~~~~~~-~~~~~i~I~lP~~~~l~ 133 (166)
T PF13349_consen 66 GDVEIKPSDD-DKIKVEY---NGKKPEISVEG-GTLTIKSKDRE------SFFFKGFNFNNS-DNKSKITIYLPKDYKLD 133 (166)
T ss_pred eeEEEEEcCC-ccEEEEE---cCcEEEEEEcC-CEEEEEEeccc------ccccceEEEccc-CCCcEEEEEECCCCcee
Confidence 4466766444 4445555 22268888888 89999887322 111112222111 33456679999999888
Q ss_pred CeEEEEeCCEEEEEE
Q 044197 153 HIKAHMENGILRVTE 167 (202)
Q Consensus 153 ~I~A~~~~GvL~I~i 167 (202)
+|+....+|-++|.=
T Consensus 134 ~i~i~~~~G~i~i~~ 148 (166)
T PF13349_consen 134 KIDIKTSSGDITIED 148 (166)
T ss_pred EEEEEeccccEEEEc
Confidence 999999999888754
No 43
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=84.04 E-value=0.88 Score=39.45 Aligned_cols=82 Identities=13% Similarity=0.003 Sum_probs=63.9
Q ss_pred cceeEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccC
Q 044197 73 ARADLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLD 152 (202)
Q Consensus 73 p~idv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~ 152 (202)
.++|+.+|.....|-+.-|-+..++|++.+++ ++|.|+-+... .+.+ |...+.|-..|+++
T Consensus 177 i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~-NTL~I~~q~~~----------~~~~--------~~~~~~Ly~ev~P~ 237 (368)
T COG5091 177 IAYDFSETSDTAIIFIYRPPVGDEQVSPVLEG-NTLSISYQPRR----------LRLW--------NDITISLYKEVYPD 237 (368)
T ss_pred eeeeccccceeEEEEEecCCCCccccceeecC-Ccceeeeeccc----------cchH--------HHhhhhhhhhcCcc
Confidence 45778899999999999999999999999999 89999876544 1111 44567788899998
Q ss_pred CeEEEEeCCEEEEEEeccCcc
Q 044197 153 HIKAHMENGILRVTEPKLAEE 173 (202)
Q Consensus 153 ~I~A~~~~GvL~I~iPK~~~~ 173 (202)
...-..---++.|++-|....
T Consensus 238 ~~s~k~fsK~~e~~l~KV~~v 258 (368)
T COG5091 238 IRSIKSFSKRVEVHLRKVEMV 258 (368)
T ss_pred hhhhhhcchhheehhhhhhhh
Confidence 877776667888888887653
No 44
>PF14913 DPCD: DPCD protein family
Probab=80.11 E-value=17 Score=29.78 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=57.4
Q ss_pred ccceeEEEcCCeEEEEE-EeCCCCccceEEEEEe-CeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCC--
Q 044197 72 LARADLMETPTAHVITL-DILGMKKDNVKIEVEE-NRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPM-- 147 (202)
Q Consensus 72 ~p~idv~e~~~~y~i~~-dlPG~~~edI~V~v~~-~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~-- 147 (202)
.|-+-=..+...|+-++ +|| +.++--+|++++ ++.++|+-.-+. |.+.|.+|+
T Consensus 86 nP~~~r~dTk~~fqWRIRNLP-YP~dvYsVtvd~~~r~ivvRTtNKK----------------------YyKk~~IPDl~ 142 (194)
T PF14913_consen 86 NPIFVRRDTKTSFQWRIRNLP-YPKDVYSVTVDEDERCIVVRTTNKK----------------------YYKKFSIPDLD 142 (194)
T ss_pred CCEEEEEcCccceEEEEccCC-CCccceEEEEcCCCcEEEEECcCcc----------------------ceeEecCCcHH
Confidence 34444467777888888 566 577888888875 356888765544 778899994
Q ss_pred ----CCccCCeEEEEeCCEEEEEEeccC
Q 044197 148 ----SADLDHIKAHMENGILRVTEPKLA 171 (202)
Q Consensus 148 ----~vd~~~I~A~~~~GvL~I~iPK~~ 171 (202)
..+.+.++..+.|..|.|+..|-.
T Consensus 143 R~~l~l~~~~ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 143 RCGLPLEQSALSFAHQNNTLIISYKKPK 170 (194)
T ss_pred hhCCCcchhhceeeeecCeEEEEecCcH
Confidence 247788899999999999998864
No 45
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=79.94 E-value=7.6 Score=31.35 Aligned_cols=79 Identities=9% Similarity=0.048 Sum_probs=57.2
Q ss_pred cccceeEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCc
Q 044197 71 ALARADLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSAD 150 (202)
Q Consensus 71 ~~p~idv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd 150 (202)
..|.+-|.+..+-..+++.++-- .+..|.++. ..|+++|+...+ .++ +...|.|=..||
T Consensus 6 ~~p~v~Waqr~~~vyltv~Ved~--~d~~v~~e~-~~l~fs~k~~~d----------~~~--------~~~~ief~~eId 64 (180)
T KOG3158|consen 6 QPPEVKWAQRRDLVYLTVCVEDA--KDVHVNLEP-SKLTFSCKSGAD----------NHK--------YENEIEFFDEID 64 (180)
T ss_pred cCCcchhhhhcCeEEEEEEeccC--ccceeeccc-cEEEEEeccCCC----------cee--------eEEeeehhhhcC
Confidence 35678888999999999999854 466677788 689999987541 111 566688888999
Q ss_pred cCCeEEEEeCCEEEEEEeccC
Q 044197 151 LDHIKAHMENGILRVTEPKLA 171 (202)
Q Consensus 151 ~~~I~A~~~~GvL~I~iPK~~ 171 (202)
+++.+-+-. +-....++++.
T Consensus 65 pe~sk~k~~-~r~if~i~~K~ 84 (180)
T KOG3158|consen 65 PEKSKHKRT-SRSIFCILRKK 84 (180)
T ss_pred Hhhcccccc-ceEEEEEEEcc
Confidence 998876665 55555555543
No 46
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=79.64 E-value=3.1 Score=28.78 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=28.2
Q ss_pred CeEEEEEEeC-CCCccceEEEEEeCeEEEEEEE
Q 044197 82 TAHVITLDIL-GMKKDNVKIEVEENRVLRVSGE 113 (202)
Q Consensus 82 ~~y~i~~dlP-G~~~edI~V~v~~~~~L~I~g~ 113 (202)
..|.=++.|| +++++.++-.+.++|+|+|++.
T Consensus 50 ~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~P 82 (83)
T cd06526 50 REFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAP 82 (83)
T ss_pred EEEEEEEECCCCCChHHeEEEeCCCcEEEEEec
Confidence 4788899999 9999999999987689999864
No 47
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=76.35 E-value=5.2 Score=28.17 Aligned_cols=30 Identities=10% Similarity=0.274 Sum_probs=26.8
Q ss_pred eEEEEEEeC-CCCccceEEEE-EeCeEEEEEEE
Q 044197 83 AHVITLDIL-GMKKDNVKIEV-EENRVLRVSGE 113 (202)
Q Consensus 83 ~y~i~~dlP-G~~~edI~V~v-~~~~~L~I~g~ 113 (202)
.|.=++.|| +++.+.|+-++ ++ |+|+|.|+
T Consensus 51 ~F~R~~~LP~~Vd~~~v~A~~~~d-GvL~I~~~ 82 (83)
T cd06477 51 SFTRQYQLPDGVEHKDLSAMLCHD-GILVVETK 82 (83)
T ss_pred EEEEEEECCCCcchheEEEEEcCC-CEEEEEec
Confidence 778889999 99999999998 56 99999985
No 48
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=76.00 E-value=5.3 Score=28.69 Aligned_cols=31 Identities=6% Similarity=0.091 Sum_probs=27.1
Q ss_pred CeEEEEEEeC-CCCccceEEEEEeCeEEEEEE
Q 044197 82 TAHVITLDIL-GMKKDNVKIEVEENRVLRVSG 112 (202)
Q Consensus 82 ~~y~i~~dlP-G~~~edI~V~v~~~~~L~I~g 112 (202)
..|.=++.|| +++.++|+-.+..+|.|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 4677789999 999999999998559999986
No 49
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=75.34 E-value=6.6 Score=27.91 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=29.7
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeccCc
Q 044197 138 KFWRQFRMPMSADLDHIKAHMENGILRVTEPKLAE 172 (202)
Q Consensus 138 ~f~r~~~LP~~vd~~~I~A~~~~GvL~I~iPK~~~ 172 (202)
.|.-...|| .++.++|+..+.+|.|+|+.-+...
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 377788999 8899999999999999999988653
No 50
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=74.69 E-value=5.7 Score=26.90 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=29.1
Q ss_pred cCCeEEEEEEeC-CCCccceEEEEEeCeEEEEEEE
Q 044197 80 TPTAHVITLDIL-GMKKDNVKIEVEENRVLRVSGE 113 (202)
Q Consensus 80 ~~~~y~i~~dlP-G~~~edI~V~v~~~~~L~I~g~ 113 (202)
....|.-++.|| +++.+.++..+.+ |.|+|...
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~~-G~L~I~~p 87 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLEN-GVLTITLP 87 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEeC-CEEEEEEc
Confidence 357899999999 9999999999999 89999854
No 51
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=73.12 E-value=29 Score=28.06 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=56.7
Q ss_pred ccceeEEEcCCeEEEEEEeC-CC-CccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCC
Q 044197 72 LARADLMETPTAHVITLDIL-GM-KKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSA 149 (202)
Q Consensus 72 ~p~idv~e~~~~y~i~~dlP-G~-~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~v 149 (202)
.+.+.|.+|=....|.+.+| |+ +..+|.|.+.. +.|.|.-+... -+. -| .|...|
T Consensus 18 ~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~-~hI~V~~kg~~-----------~il-----dG------~L~~~v 74 (179)
T KOG2265|consen 18 EEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQS-KHIKVGLKGQP-----------PIL-----DG------ELSHSV 74 (179)
T ss_pred ccceeeeeehhheEEEeecCCCCcccceEEEEeee-eEEEEecCCCC-----------cee-----cC------cccccc
Confidence 45678889889999999898 88 88999999999 77777644322 111 11 355677
Q ss_pred ccCCeEEEEeCCEEEEEEeccCc
Q 044197 150 DLDHIKAHMENGILRVTEPKLAE 172 (202)
Q Consensus 150 d~~~I~A~~~~GvL~I~iPK~~~ 172 (202)
+.+.-.=.+++|.+.|.+-++..
T Consensus 75 k~des~WtiEd~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 75 KVDESTWTIEDGKMIVILLKKSN 97 (179)
T ss_pred ccccceEEecCCEEEEEEeeccc
Confidence 77777777899977777766644
No 52
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=72.91 E-value=6.8 Score=27.79 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=27.6
Q ss_pred CeEEEEEEeC-CCCccceEEEEEeCeEEEEEEEeec
Q 044197 82 TAHVITLDIL-GMKKDNVKIEVEENRVLRVSGERKS 116 (202)
Q Consensus 82 ~~y~i~~dlP-G~~~edI~V~v~~~~~L~I~g~~~~ 116 (202)
..|.-++.|| +++.+.|+..+++ |.|+|..-+..
T Consensus 55 ~~f~r~~~lP~~vd~~~i~a~~~~-GvL~I~~pk~~ 89 (102)
T PF00011_consen 55 GSFERSIRLPEDVDPDKIKASYEN-GVLTITIPKKE 89 (102)
T ss_dssp EEEEEEEE-STTB-GGG-EEEETT-SEEEEEEEBSS
T ss_pred ceEEEEEcCCCcCCcceEEEEecC-CEEEEEEEccc
Confidence 4677899999 9999999999988 89999999877
No 53
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=72.56 E-value=4.7 Score=32.43 Aligned_cols=30 Identities=10% Similarity=0.192 Sum_probs=27.4
Q ss_pred EEEeC-CCCccceEEEEEeCeEEEEEEEeec
Q 044197 87 TLDIL-GMKKDNVKIEVEENRVLRVSGERKS 116 (202)
Q Consensus 87 ~~dlP-G~~~edI~V~v~~~~~L~I~g~~~~ 116 (202)
+.-|| ||+++.|.-.++.+|+|+|+|.+..
T Consensus 120 ~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTSTLSSDGVLTIEAPKPP 150 (173)
T ss_pred EecCCCCCChhheEEeeCCCceEEEEccCCC
Confidence 56799 9999999999988899999999877
No 54
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=70.76 E-value=7.2 Score=27.44 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=27.7
Q ss_pred CCeEEEEEEeC-CCCccceEEEEEeCeEEEEEE
Q 044197 81 PTAHVITLDIL-GMKKDNVKIEVEENRVLRVSG 112 (202)
Q Consensus 81 ~~~y~i~~dlP-G~~~edI~V~v~~~~~L~I~g 112 (202)
...|.-++.|| +++.+.|+-.+++ |.|+|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~n-GvL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLEN-GVLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEEC-CEEEEEe
Confidence 35889999999 8999999999999 9999974
No 55
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=70.20 E-value=15 Score=25.77 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=30.7
Q ss_pred cEEEEEEECCCCCccCCeEEEEeCCEEEEEEeccCcc
Q 044197 137 GKFWRQFRMPMSADLDHIKAHMENGILRVTEPKLAEE 173 (202)
Q Consensus 137 g~f~r~~~LP~~vd~~~I~A~~~~GvL~I~iPK~~~~ 173 (202)
.+|.-.+.|| .++.++|+-.+++|.|+|+..+....
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccc
Confidence 3588889999 68999999999999999998876543
No 56
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=69.43 E-value=8.8 Score=26.88 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=28.7
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeccC
Q 044197 138 KFWRQFRMPMSADLDHIKAHMENGILRVTEPKLA 171 (202)
Q Consensus 138 ~f~r~~~LP~~vd~~~I~A~~~~GvL~I~iPK~~ 171 (202)
+|.-.+.|| +++++.|+..+.||.|+|+--+..
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 40 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDNLLEVSARHPQ 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 477889998 888999999999999999987643
No 57
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=68.73 E-value=11 Score=26.19 Aligned_cols=32 Identities=3% Similarity=0.126 Sum_probs=28.5
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEecc
Q 044197 138 KFWRQFRMPMSADLDHIKAHMENGILRVTEPKL 170 (202)
Q Consensus 138 ~f~r~~~LP~~vd~~~I~A~~~~GvL~I~iPK~ 170 (202)
+|.-.+.|| +++++.|+..+.+|.|+|+.-+.
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 488889999 89999999999999999998654
No 58
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=68.56 E-value=8 Score=27.27 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=27.6
Q ss_pred CCeEEEEEEeC-CCCccceEEEE-EeCeEEEEEE
Q 044197 81 PTAHVITLDIL-GMKKDNVKIEV-EENRVLRVSG 112 (202)
Q Consensus 81 ~~~y~i~~dlP-G~~~edI~V~v-~~~~~L~I~g 112 (202)
...|.=.+.|| +++.+.|+-.+ .+ |+|+|.+
T Consensus 53 ~~~F~R~~~LP~~Vd~~~i~A~~~~d-GvL~I~~ 85 (87)
T cd06481 53 YQEFVREAQLPEHVDPEAVTCSLSPS-GHLHIRA 85 (87)
T ss_pred eeEEEEEEECCCCcChHHeEEEeCCC-ceEEEEc
Confidence 46788899999 89999999999 67 9999985
No 59
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=68.31 E-value=29 Score=29.89 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=69.0
Q ss_pred cccceeEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCc
Q 044197 71 ALARADLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSAD 150 (202)
Q Consensus 71 ~~p~idv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd 150 (202)
..-+.||++++...+|.+..-|.-++.-.|..++ -.|.|.-.... ++ .+|...+.|=.-|+
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~-~~l~V~ivf~~--------gn----------a~fd~d~kLwgvvn 273 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANG-TTLHVSIVFGF--------GN----------ASFDLDYKLWGVVN 273 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeCC-eEEEEEEEecC--------CC----------ceeeccceeeeeec
Confidence 4567899999999999999999999999998888 78888866532 11 13777777777889
Q ss_pred cCCeEEEEeCCEEEEEEeccCcc
Q 044197 151 LDHIKAHMENGILRVTEPKLAEE 173 (202)
Q Consensus 151 ~~~I~A~~~~GvL~I~iPK~~~~ 173 (202)
++.-.+.+-.--.+|+++|.++.
T Consensus 274 ve~s~v~m~~tkVEIsl~k~ep~ 296 (320)
T KOG1667|consen 274 VEESSVVMGETKVEISLKKAEPG 296 (320)
T ss_pred hhhceEEeecceEEEEEeccCCC
Confidence 99988889888999999999764
No 60
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=67.91 E-value=9 Score=26.89 Aligned_cols=30 Identities=13% Similarity=0.273 Sum_probs=25.9
Q ss_pred CeEEEEEEeCCCCccceEEEEEeCeEEEEEE
Q 044197 82 TAHVITLDILGMKKDNVKIEVEENRVLRVSG 112 (202)
Q Consensus 82 ~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g 112 (202)
..|.-.+.||.++.+.++-++++ |.|+|.-
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~d-GvL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYEN-GVLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEEC-CEEEEEE
Confidence 35677788999999999999999 8999974
No 61
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=67.63 E-value=9.2 Score=26.78 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=27.0
Q ss_pred eEEEEEEeC-CCCccceEEEEE-eCeEEEEEEEe
Q 044197 83 AHVITLDIL-GMKKDNVKIEVE-ENRVLRVSGER 114 (202)
Q Consensus 83 ~y~i~~dlP-G~~~edI~V~v~-~~~~L~I~g~~ 114 (202)
.|.=.+.|| +++.+.|+-+++ + |+|+|..-+
T Consensus 51 eF~R~~~LP~~vd~~~i~A~~~~d-GvL~I~lPk 83 (84)
T cd06498 51 EFQRKYRIPADVDPLTITSSLSPD-GVLTVCGPR 83 (84)
T ss_pred EEEEEEECCCCCChHHcEEEeCCC-CEEEEEEeC
Confidence 377889999 999999999996 7 999998754
No 62
>PRK10743 heat shock protein IbpA; Provisional
Probab=67.56 E-value=19 Score=27.79 Aligned_cols=32 Identities=6% Similarity=0.132 Sum_probs=26.3
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEeccC
Q 044197 139 FWRQFRMPMSADLDHIKAHMENGILRVTEPKLA 171 (202)
Q Consensus 139 f~r~~~LP~~vd~~~I~A~~~~GvL~I~iPK~~ 171 (202)
|.-...|| +++.++|+..+++|+|+|+.-+..
T Consensus 47 ~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 47 YRIAIAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 44556688 888999999999999999987654
No 63
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=65.90 E-value=15 Score=25.65 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=28.9
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeccC
Q 044197 138 KFWRQFRMPMSADLDHIKAHMENGILRVTEPKLA 171 (202)
Q Consensus 138 ~f~r~~~LP~~vd~~~I~A~~~~GvL~I~iPK~~ 171 (202)
.|.-.+.|| .++++.|+..+++|.|+|+--|..
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 377789999 899999999999999999987653
No 64
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=65.52 E-value=15 Score=25.76 Aligned_cols=32 Identities=6% Similarity=0.108 Sum_probs=28.3
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEecc
Q 044197 138 KFWRQFRMPMSADLDHIKAHMENGILRVTEPKL 170 (202)
Q Consensus 138 ~f~r~~~LP~~vd~~~I~A~~~~GvL~I~iPK~ 170 (202)
.|.-.+.|| +++++.|+..+.+|.|+|+--+.
T Consensus 11 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 11 KFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 478889998 89999999999999999998654
No 65
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=64.87 E-value=17 Score=24.23 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=29.1
Q ss_pred CeEEEEEEeC-CCCccceEEEEEeCeEEEEEEEeec
Q 044197 82 TAHVITLDIL-GMKKDNVKIEVEENRVLRVSGERKS 116 (202)
Q Consensus 82 ~~y~i~~dlP-G~~~edI~V~v~~~~~L~I~g~~~~ 116 (202)
+.|.+.++|| .+++++.+..+.+ +.|.|.-.+..
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~-~~l~i~L~K~~ 70 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGN-GVLVFTLVKKE 70 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeC-CEEEEEEEeCC
Confidence 5699999999 7799999999999 78999876643
No 66
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=62.32 E-value=31 Score=22.75 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=32.5
Q ss_pred ceeEE-EcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEee
Q 044197 74 RADLM-ETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERK 115 (202)
Q Consensus 74 ~idv~-e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~ 115 (202)
++.+. -....|.|++..+|+..-.-+|.+..+....|...-+
T Consensus 26 p~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 26 PLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred cceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEE
Confidence 34555 4467999999999999998889888657777776644
No 67
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=62.01 E-value=64 Score=24.05 Aligned_cols=45 Identities=16% Similarity=0.315 Sum_probs=32.0
Q ss_pred EEEEEEECCCCC-ccCCeEEEEeCCEEEEEEeccCcccCCCCeEEEecCCCC
Q 044197 138 KFWRQFRMPMSA-DLDHIKAHMENGILRVTEPKLAEEKKRQPKVINIDEESG 188 (202)
Q Consensus 138 ~f~r~~~LP~~v-d~~~I~A~~~~GvL~I~iPK~~~~~~~~~r~I~I~~~~~ 188 (202)
.|+.-|....++ |...|+-.+++.++....|+.. .++|.|+.+..
T Consensus 45 tys~li~~d~dvG~l~~Vkf~W~~~~~n~~~p~~~------~~~I~Vq~Ge~ 90 (113)
T cd01759 45 TYSAFIDVDVDVGPLTKVKFIWNNNVINITLPKVG------AEKITVQSGKD 90 (113)
T ss_pred EEEEEEEccCCCCCEEEEEEEEeCCccCCCCCeEE------EEEEEEEeCCC
Confidence 455566666666 6677888888888877677763 56899996643
No 68
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=61.57 E-value=25 Score=27.31 Aligned_cols=32 Identities=9% Similarity=0.157 Sum_probs=26.3
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEeccC
Q 044197 139 FWRQFRMPMSADLDHIKAHMENGILRVTEPKLA 171 (202)
Q Consensus 139 f~r~~~LP~~vd~~~I~A~~~~GvL~I~iPK~~ 171 (202)
|.-...|| +++.++|+-.+++|.|+|+--+..
T Consensus 45 y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 55556788 888999999999999999987654
No 69
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=60.42 E-value=34 Score=27.69 Aligned_cols=45 Identities=24% Similarity=0.480 Sum_probs=32.0
Q ss_pred ccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 044197 95 KDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIKAHMENGILRVTEP 168 (202)
Q Consensus 95 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~A~~~~GvL~I~iP 168 (202)
|++++|++++ +.++|+|.+.. .++.|.-+ .++...++|.|.|...
T Consensus 13 P~~V~v~i~~-~~v~VkGp~G~----------------------L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEG-LVVTVKGPKGE----------------------LTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred CCCCEEEEEC-CEEEEECCCeE----------------------EEEEecCC------cEEEEEECCEEEEEEC
Confidence 6788999999 89999998754 44444321 3556678888777755
No 70
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=60.10 E-value=17 Score=23.29 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=27.4
Q ss_pred CCeEEEEEEeC-CCCccceEEEEEeCeEEEEEEE
Q 044197 81 PTAHVITLDIL-GMKKDNVKIEVEENRVLRVSGE 113 (202)
Q Consensus 81 ~~~y~i~~dlP-G~~~edI~V~v~~~~~L~I~g~ 113 (202)
...|...+.|| .+.+++++..+.+ +.|.|...
T Consensus 47 ~~~~~~~~~L~~~i~~~~~~~~~~~-~~l~i~l~ 79 (80)
T cd00298 47 YGEFERSFELPEDVDPEKSKASLEN-GVLEITLP 79 (80)
T ss_pred eeeEEEEEECCCCcCHHHCEEEEEC-CEEEEEEc
Confidence 46899999999 6788999999999 88988754
No 71
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=59.23 E-value=40 Score=27.00 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=31.6
Q ss_pred ccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 044197 95 KDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIKAHMENGILRVTEP 168 (202)
Q Consensus 95 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~A~~~~GvL~I~iP 168 (202)
|++++|++++ +.++|+|.+.. ..+.+. |. .|+...++|.|.|..+
T Consensus 7 P~~V~v~i~~-~~i~vkGp~G~----------------------L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEG-NIVTVKGPKGE----------------------VTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeC-CEEEEECCCeE----------------------EEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 6788999999 89999998754 444442 22 3555678888777754
No 72
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=57.53 E-value=29 Score=26.62 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=28.4
Q ss_pred CeEEEEEEeC-CCCccceEEEEEeCeEEEEEEEeec
Q 044197 82 TAHVITLDIL-GMKKDNVKIEVEENRVLRVSGERKS 116 (202)
Q Consensus 82 ~~y~i~~dlP-G~~~edI~V~v~~~~~L~I~g~~~~ 116 (202)
..|.=++.|| +++++.++-++++ |.|+|.-.+..
T Consensus 100 ~~f~r~~~Lp~~v~~~~~~A~~~n-GvL~I~lpk~~ 134 (146)
T COG0071 100 GEFERTFRLPEKVDPEVIKAKYKN-GLLTVTLPKAE 134 (146)
T ss_pred eeEEEEEECcccccccceeeEeeC-cEEEEEEeccc
Confidence 4577788888 7888889999999 89999988765
No 73
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=57.15 E-value=18 Score=23.30 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=20.3
Q ss_pred CCCCccceEEEEEeCeEEEEEEEeec
Q 044197 91 LGMKKDNVKIEVEENRVLRVSGERKS 116 (202)
Q Consensus 91 PG~~~edI~V~v~~~~~L~I~g~~~~ 116 (202)
++++..+|.|.+.+ +.+.++|.-..
T Consensus 12 ~~~~~~~i~v~v~~-g~v~L~G~v~s 36 (64)
T PF04972_consen 12 PWLPDSNISVSVEN-GVVTLSGEVPS 36 (64)
T ss_dssp -CTT-TTEEEEEEC-TEEEEEEEESS
T ss_pred cccCCCeEEEEEEC-CEEEEEeeCcH
Confidence 36777789999999 89999999865
No 74
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=56.13 E-value=30 Score=24.23 Aligned_cols=33 Identities=6% Similarity=0.203 Sum_probs=29.0
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeccC
Q 044197 138 KFWRQFRMPMSADLDHIKAHMENGILRVTEPKLA 171 (202)
Q Consensus 138 ~f~r~~~LP~~vd~~~I~A~~~~GvL~I~iPK~~ 171 (202)
.|.-.+.|| +++.+.|+-.+.++.|+|+--+..
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 488889998 899999999999999999987653
No 75
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=54.72 E-value=45 Score=26.69 Aligned_cols=44 Identities=23% Similarity=0.471 Sum_probs=31.4
Q ss_pred ccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 044197 95 KDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIKAHMENGILRVTEP 168 (202)
Q Consensus 95 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~A~~~~GvL~I~iP 168 (202)
|++|+|++++ +.++|+|.+.. ..+.| |. .+....+++.|.|...
T Consensus 11 P~~V~v~~~~-~~v~v~Gp~G~----------------------l~~~l--~~-----~i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDG-NVVTVKGPKGE----------------------LSRTL--HP-----GVTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeC-CEEEEEcCCeE----------------------EEEEc--CC-----CeEEEEECCEEEEEec
Confidence 6888999998 89999988654 44444 43 3455567887777754
No 76
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=52.16 E-value=62 Score=23.41 Aligned_cols=40 Identities=13% Similarity=0.119 Sum_probs=30.2
Q ss_pred cccceeEEEcCCeEEEEEEeCCC-----CccceEEEEEeCeEEEEE
Q 044197 71 ALARADLMETPTAHVITLDILGM-----KKDNVKIEVEENRVLRVS 111 (202)
Q Consensus 71 ~~p~idv~e~~~~y~i~~dlPG~-----~~edI~V~v~~~~~L~I~ 111 (202)
..|++.|+++++.|.|++--+.- .++...|.-++ +.+-|.
T Consensus 24 ~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~-g~~fI~ 68 (95)
T PF12992_consen 24 GKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEED-GNLFIE 68 (95)
T ss_pred CCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeC-CEEEEe
Confidence 35889999999999999877654 66777777666 555554
No 77
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=51.63 E-value=48 Score=26.57 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=17.9
Q ss_pred ccceEEEEEeCeEEEEEEEeec
Q 044197 95 KDNVKIEVEENRVLRVSGERKS 116 (202)
Q Consensus 95 ~edI~V~v~~~~~L~I~g~~~~ 116 (202)
|++|+|++++ +.|+|+|.+..
T Consensus 12 P~~V~v~~~~-~~v~vkGp~G~ 32 (178)
T PRK05498 12 PAGVEVTING-NVVTVKGPKGE 32 (178)
T ss_pred CCCCEEEEEC-CEEEEECCCEE
Confidence 6889999999 89999998755
No 78
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=50.07 E-value=51 Score=26.86 Aligned_cols=47 Identities=23% Similarity=0.323 Sum_probs=32.3
Q ss_pred ccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 044197 95 KDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIKAHMENGILRVTEP 168 (202)
Q Consensus 95 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~A~~~~GvL~I~iP 168 (202)
|++++|++++ +.++|+|.+.. .++.|.=| + ..|....+||.|.|.-+
T Consensus 13 P~~V~V~i~~-~~v~VkGp~G~----------------------L~~~~~~~-~---~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKS-RKVTVTGKYGE----------------------LTRSFRHL-P---VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred CCCCEEEEEC-CEEEEECCCce----------------------EEEEecCC-C---ceEEEEeCCCEEEEEeC
Confidence 7899999999 89999988644 44444221 1 24566678887777754
No 79
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=48.53 E-value=71 Score=22.44 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=13.0
Q ss_pred CeEEEEeCCEEEEEEec
Q 044197 153 HIKAHMENGILRVTEPK 169 (202)
Q Consensus 153 ~I~A~~~~GvL~I~iPK 169 (202)
.+++.++||-.++++-+
T Consensus 69 ~l~i~~kDgk~r~~~~~ 85 (91)
T PF14730_consen 69 TLIIDCKDGKYRLTITN 85 (91)
T ss_pred EEEEEEECCEEEEEEEE
Confidence 46778889988888754
No 80
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=48.13 E-value=18 Score=23.98 Aligned_cols=33 Identities=39% Similarity=0.476 Sum_probs=16.4
Q ss_pred CCeEEEEeCCEEEEEEeccCcccCCCCeEEEecCC
Q 044197 152 DHIKAHMENGILRVTEPKLAEEKKRQPKVINIDEE 186 (202)
Q Consensus 152 ~~I~A~~~~GvL~I~iPK~~~~~~~~~r~I~I~~~ 186 (202)
..|+|.|+||||.-.=|-.-++ ....+|.|...
T Consensus 3 ~~I~aiYe~GvlkPl~~~~L~E--g~~V~i~I~~~ 35 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEPVDLPE--GEEVKITIEEE 35 (60)
T ss_dssp --EEEEEETTEEEECS-----T--TEEEEEEE---
T ss_pred ceEEEEEECCEEEECCCCCCCC--CCEEEEEEecc
Confidence 4689999999998754444322 12345566553
No 81
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=45.96 E-value=25 Score=24.83 Aligned_cols=24 Identities=13% Similarity=0.382 Sum_probs=17.1
Q ss_pred eCCCCccceEEEEEeCeEEEEEEEe
Q 044197 90 ILGMKKDNVKIEVEENRVLRVSGER 114 (202)
Q Consensus 90 lPG~~~edI~V~v~~~~~L~I~g~~ 114 (202)
+=-|+.+.|.+.... |.|.|+|+.
T Consensus 38 I~~y~~~~I~l~t~~-G~l~I~G~~ 61 (85)
T TIGR02856 38 LVVFSPEEVKLNSTN-GKITIEGKN 61 (85)
T ss_pred eEEECCCEEEEEcCc-eEEEEEccc
Confidence 335577777777777 778888775
No 82
>PRK10568 periplasmic protein; Provisional
Probab=44.56 E-value=40 Score=27.54 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=21.3
Q ss_pred CCCCccceEEEEEeCeEEEEEEEeec
Q 044197 91 LGMKKDNVKIEVEENRVLRVSGERKS 116 (202)
Q Consensus 91 PG~~~edI~V~v~~~~~L~I~g~~~~ 116 (202)
++++..+|+|.+.+ |.++++|.-..
T Consensus 73 ~~i~~~~I~V~v~~-G~V~L~G~V~s 97 (203)
T PRK10568 73 DNIKSTDISVKTHQ-KVVTLSGFVES 97 (203)
T ss_pred CCCCCCceEEEEEC-CEEEEEEEeCC
Confidence 56667789999999 89999999874
No 83
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=42.29 E-value=64 Score=25.90 Aligned_cols=21 Identities=24% Similarity=0.741 Sum_probs=17.4
Q ss_pred ccceEEEEEeCeEEEEEEEeec
Q 044197 95 KDNVKIEVEENRVLRVSGERKS 116 (202)
Q Consensus 95 ~edI~V~v~~~~~L~I~g~~~~ 116 (202)
|++|+|++++ +.|+|+|.+..
T Consensus 12 P~~V~v~i~~-~~v~vkGp~G~ 32 (178)
T CHL00140 12 PDNVNVSIDD-QIIKVKGPKGT 32 (178)
T ss_pred CCCCEEEEEC-CEEEEECCCEE
Confidence 5788899998 89999988754
No 84
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=40.66 E-value=77 Score=25.82 Aligned_cols=21 Identities=29% Similarity=0.702 Sum_probs=18.0
Q ss_pred ccceEEEEEeCeEEEEEEEeec
Q 044197 95 KDNVKIEVEENRVLRVSGERKS 116 (202)
Q Consensus 95 ~edI~V~v~~~~~L~I~g~~~~ 116 (202)
|++|+|++++ +.|+|+|.+..
T Consensus 12 P~~V~V~i~~-~~ItVkGpkG~ 32 (189)
T PTZ00179 12 PEDVTVSVKD-RIVTVKGKRGT 32 (189)
T ss_pred CCCCEEEEeC-CEEEEECCCcE
Confidence 6889999999 89999998754
No 85
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=39.11 E-value=78 Score=20.67 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=29.5
Q ss_pred CCeEEEEEEeC-CCCccceEEEEEeCeEEEEEEEeec
Q 044197 81 PTAHVITLDIL-GMKKDNVKIEVEENRVLRVSGERKS 116 (202)
Q Consensus 81 ~~~y~i~~dlP-G~~~edI~V~v~~~~~L~I~g~~~~ 116 (202)
+..|.+.++|+ -+++++...++.+ +.|.|.-.+..
T Consensus 40 ~~~~~~~~~L~~~I~~~~s~~~~~~-~~l~i~L~K~~ 75 (84)
T cd06463 40 GKEYLLEGELFGPIDPEESKWTVED-RKIEITLKKKE 75 (84)
T ss_pred CCceEEeeEccCccchhhcEEEEeC-CEEEEEEEECC
Confidence 47899999999 5688889999998 88999977755
No 86
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=37.63 E-value=1.1e+02 Score=20.61 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=26.6
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 044197 139 FWRQFRMPMSADLDHIKAHMENGILRVTEP 168 (202)
Q Consensus 139 f~r~~~LP~~vd~~~I~A~~~~GvL~I~iP 168 (202)
..-.|.+|..++.++|+..+.+.-|+|.+.
T Consensus 10 V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 10 VTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 566788999999999999999999999986
No 87
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=37.01 E-value=25 Score=25.41 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=7.7
Q ss_pred CCCcchhhHHH
Q 044197 1 MAKPRILAMTM 11 (202)
Q Consensus 1 ~~~~~~~~~~~ 11 (202)
|++|.+|++.|
T Consensus 1 MaSK~~llL~l 11 (95)
T PF07172_consen 1 MASKAFLLLGL 11 (95)
T ss_pred CchhHHHHHHH
Confidence 88777666555
No 88
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=35.67 E-value=1.2e+02 Score=25.38 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=27.3
Q ss_pred EEEEeCeEEEEEEEeecCCCccccccCceEE------EEeeeccEEEEEEECCCC
Q 044197 100 IEVEENRVLRVSGERKSNDYYKEGVEGEKWH------RAERTFGKFWRQFRMPMS 148 (202)
Q Consensus 100 V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~------~~er~~g~f~r~~~LP~~ 148 (202)
|.+++ |.|+|++.+.... .......|. .....||.|+-++.+|..
T Consensus 60 v~v~~-G~L~i~a~~~~~~---~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVED-GNLVLSATRHPGT---ELGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEEC-CEEEEEEEcCCCC---cCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 45677 7899999876510 001112222 123478999999999953
No 89
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.90 E-value=93 Score=22.52 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=28.2
Q ss_pred eeEEEcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEe
Q 044197 75 ADLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGER 114 (202)
Q Consensus 75 idv~e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~ 114 (202)
+++.+.+| .|....||++ .|+|+.++ +.|.|.+..
T Consensus 26 ~~v~~eGD--~ivas~pgis--~ieik~E~-kkL~v~t~~ 60 (96)
T COG4004 26 WTVSEEGD--RIVASSPGIS--RIEIKPEN-KKLLVNTTD 60 (96)
T ss_pred eeEeeccc--EEEEecCCce--EEEEeccc-ceEEEeccc
Confidence 57888888 7778999986 47888888 889998844
No 90
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=33.43 E-value=30 Score=21.01 Aligned_cols=19 Identities=37% Similarity=0.373 Sum_probs=14.8
Q ss_pred CCcchhhHHHHHHHHhhhh
Q 044197 2 AKPRILAMTMLFLVMAATL 20 (202)
Q Consensus 2 ~~~~~~~~~~~~~~m~~~~ 20 (202)
+|.-.|+..|++++|+.++
T Consensus 2 lkSl~fa~iMVPVvma~il 20 (41)
T PF10766_consen 2 LKSLAFAVIMVPVVMALIL 20 (41)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4556789999999998655
No 91
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=31.52 E-value=23 Score=27.80 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=18.5
Q ss_pred CCCCCccCCeEEEEeCCEEEEEEec
Q 044197 145 MPMSADLDHIKAHMENGILRVTEPK 169 (202)
Q Consensus 145 LP~~vd~~~I~A~~~~GvL~I~iPK 169 (202)
|-++++.+.--+.|.||||+|.++-
T Consensus 65 l~e~~~~~~~Dv~y~~GVLTl~lg~ 89 (156)
T KOG3413|consen 65 LAEEVPGEGFDVDYADGVLTLKLGS 89 (156)
T ss_pred HHhhcCccccccccccceEEEEecC
Confidence 3345555666678999999999983
No 92
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=31.25 E-value=50 Score=24.23 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=15.3
Q ss_pred CCeEEEEeCCEEEEEEec
Q 044197 152 DHIKAHMENGILRVTEPK 169 (202)
Q Consensus 152 ~~I~A~~~~GvL~I~iPK 169 (202)
..+.+.+.+|||+|+++.
T Consensus 28 ~d~D~e~~~gVLti~f~~ 45 (105)
T cd00503 28 ADIDVETQGGVLTLTFGN 45 (105)
T ss_pred cCEeeeccCCEEEEEECC
Confidence 567788899999999983
No 93
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=29.87 E-value=49 Score=21.96 Aligned_cols=23 Identities=13% Similarity=0.414 Sum_probs=18.8
Q ss_pred CCccceEEEEEeCeEEEEEEEeec
Q 044197 93 MKKDNVKIEVEENRVLRVSGERKS 116 (202)
Q Consensus 93 ~~~edI~V~v~~~~~L~I~g~~~~ 116 (202)
|+++.|.+.... +.|.|.|+.=.
T Consensus 23 f~~~~I~l~t~~-g~l~I~G~~L~ 45 (66)
T PF07873_consen 23 FDDEEIRLNTKK-GKLTIKGEGLV 45 (66)
T ss_dssp EETTEEEEEETT-EEEEEEEEEEE
T ss_pred ECCCEEEEEeCC-EEEEEECceEE
Confidence 567888888888 89999998743
No 94
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=29.40 E-value=1.8e+02 Score=23.56 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=27.6
Q ss_pred ccceEEEEEeCeEEEEEEEeecCCCccccccCceEEE-EeeeccEEEEEEECCCC
Q 044197 95 KDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHR-AERTFGKFWRQFRMPMS 148 (202)
Q Consensus 95 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~-~er~~g~f~r~~~LP~~ 148 (202)
+++++|+ + +.|+|++.+.... ........+.. ....||.|+-++.+|..
T Consensus 31 ~~nv~v~--~-g~L~l~~~~~~~~--~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 31 ADNVEFS--D-GGLALTLTNDTYG--EKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred cccEEEE--C-CeEEEEEeCCcCC--CCccccceEEECceEEeeEEEEEEEcCCC
Confidence 5665554 6 6788888765410 00111122221 23468999999999853
No 95
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=28.85 E-value=1.3e+02 Score=19.99 Aligned_cols=35 Identities=11% Similarity=0.253 Sum_probs=28.7
Q ss_pred CCeEEEEEEeC-CCCccceEEEEEeCeEEEEEEEeec
Q 044197 81 PTAHVITLDIL-GMKKDNVKIEVEENRVLRVSGERKS 116 (202)
Q Consensus 81 ~~~y~i~~dlP-G~~~edI~V~v~~~~~L~I~g~~~~ 116 (202)
+..|.+.++|. -+.+++.+..+.+ +.|.|.-.+..
T Consensus 41 ~~~~~~~~~L~~~I~~~~s~~~~~~-~~vei~L~K~~ 76 (84)
T cd06466 41 GSEYQLELDLFGPIDPEQSKVSVLP-TKVEITLKKAE 76 (84)
T ss_pred CCeEEEecccccccCchhcEEEEeC-eEEEEEEEcCC
Confidence 45799999998 6789999999998 78888877644
No 96
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=28.56 E-value=71 Score=23.49 Aligned_cols=19 Identities=21% Similarity=0.358 Sum_probs=15.9
Q ss_pred CCeEEEEeCCEEEEEEecc
Q 044197 152 DHIKAHMENGILRVTEPKL 170 (202)
Q Consensus 152 ~~I~A~~~~GvL~I~iPK~ 170 (202)
..+.+.+.+|||+|+++..
T Consensus 30 ~d~d~e~~~gVLti~~~~~ 48 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPDG 48 (109)
T ss_dssp STEEEEEETTEEEEEETTS
T ss_pred CceEEEccCCEEEEEECCC
Confidence 3688999999999999654
No 97
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=27.40 E-value=74 Score=24.58 Aligned_cols=25 Identities=32% Similarity=0.532 Sum_probs=22.1
Q ss_pred CCCCccceEEEEEeCeEEEEEEEeec
Q 044197 91 LGMKKDNVKIEVEENRVLRVSGERKS 116 (202)
Q Consensus 91 PG~~~edI~V~v~~~~~L~I~g~~~~ 116 (202)
.|+...+|.|.+++ |.++++|.-..
T Consensus 38 ~~~~~~~i~V~v~~-G~v~l~G~v~s 62 (147)
T PRK11198 38 QGLGDADVNVQVED-GKATVSGDAAS 62 (147)
T ss_pred cCCCcCCceEEEeC-CEEEEEEEeCC
Confidence 47888889999998 89999999876
No 98
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=27.18 E-value=1.8e+02 Score=19.24 Aligned_cols=47 Identities=15% Similarity=0.347 Sum_probs=30.9
Q ss_pred ccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeEEEEeCCEEEEEEec
Q 044197 95 KDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIKAHMENGILRVTEPK 169 (202)
Q Consensus 95 ~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~A~~~~GvL~I~iPK 169 (202)
|+.++|++++ +.+.+.|.+.. .++.+|..+. |+...+++.+.+....
T Consensus 2 P~gV~v~~~~-~~i~v~G~~g~------------------------l~~~~~~~v~---v~~~~~~~~~~~~~~~ 48 (77)
T PF00347_consen 2 PEGVKVTIKG-NIITVKGPKGE------------------------LSRPIPPGVK---VEIKVEDNKITVSVLS 48 (77)
T ss_dssp STTCEEEEET-TEEEEESSSSE------------------------EEEEETTTEE---EEEEEETTSEEEEEEE
T ss_pred CCcEEEEEeC-cEEEEECCCEe------------------------EEEECCCCee---EEEEcCCCceEEEECc
Confidence 5678999999 88999987643 2356665532 2233568877776653
No 99
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=26.64 E-value=2.3e+02 Score=26.50 Aligned_cols=59 Identities=29% Similarity=0.402 Sum_probs=39.9
Q ss_pred eeccEEEEEEECCCCCccCCeEEEEe---CCEEEEEEeccCcccCCCCeEEEecCCCCCCCCccc
Q 044197 134 RTFGKFWRQFRMPMSADLDHIKAHME---NGILRVTEPKLAEEKKRQPKVINIDEESGNSPNEDI 195 (202)
Q Consensus 134 r~~g~f~r~~~LP~~vd~~~I~A~~~---~GvL~I~iPK~~~~~~~~~r~I~I~~~~~~~~~~~~ 195 (202)
+-.|.|.-+=-.|.+--.-+|+..|+ ||+|.|+.--+.. .+..+|.|....+-.+.++.
T Consensus 484 ~lLGkFdltGipPAPRGvpqIEVtFevDangiL~VsAeDKgt---g~~~kitItNd~~rLt~EdI 545 (663)
T KOG0100|consen 484 HLLGKFDLTGIPPAPRGVPQIEVTFEVDANGILQVSAEDKGT---GKKEKITITNDKGRLTPEDI 545 (663)
T ss_pred cccccccccCCCCCCCCCccEEEEEEEccCceEEEEeeccCC---CCcceEEEecCCCCCCHHHH
Confidence 34566766544455555567888774 8999999887643 36789999887765444443
No 100
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=26.53 E-value=58 Score=23.79 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.5
Q ss_pred CeEEEEeCCEEEEEEec
Q 044197 153 HIKAHMENGILRVTEPK 169 (202)
Q Consensus 153 ~I~A~~~~GvL~I~iPK 169 (202)
.+.+.+.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 47788899999999984
No 101
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=26.32 E-value=62 Score=23.79 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.6
Q ss_pred eEEEEeCCEEEEEEecc
Q 044197 154 IKAHMENGILRVTEPKL 170 (202)
Q Consensus 154 I~A~~~~GvL~I~iPK~ 170 (202)
+.+.+.+|||+|+++..
T Consensus 29 ~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 29 IDCERNGGVLTLTFENG 45 (105)
T ss_pred eeeeccCCEEEEEECCC
Confidence 67888999999999854
No 102
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=24.91 E-value=1.2e+02 Score=24.62 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=12.8
Q ss_pred cceEEEEEeCeEEEEEEEeec
Q 044197 96 DNVKIEVEENRVLRVSGERKS 116 (202)
Q Consensus 96 edI~V~v~~~~~L~I~g~~~~ 116 (202)
..+.+..+. +.+.|.|..+.
T Consensus 131 ~~i~v~~~~-~~V~V~Gtlkt 150 (188)
T PRK13726 131 TSVRVWPQY-GRVDIRGVLKT 150 (188)
T ss_pred eeEEEccCC-CEEEEEEEEEE
Confidence 455665555 66777777655
No 103
>PRK14290 chaperone protein DnaJ; Provisional
Probab=24.77 E-value=5e+02 Score=23.10 Aligned_cols=46 Identities=13% Similarity=0.129 Sum_probs=31.0
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEeccCcccCCCCeEEEecCCCC
Q 044197 139 FWRQFRMPMSADLDHIKAHMENGILRVTEPKLAEEKKRQPKVINIDEESG 188 (202)
Q Consensus 139 f~r~~~LP~~vd~~~I~A~~~~GvL~I~iPK~~~~~~~~~r~I~I~~~~~ 188 (202)
....|+|.+.+--..++...-+|.++|.+|.... ...+|.|...|-
T Consensus 274 ~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~----~g~~iri~g~G~ 319 (365)
T PRK14290 274 VDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQ----PGEVLKIKGAGM 319 (365)
T ss_pred EEEEeCHHHHhCCCEEEEEcCCceEEEEECCccC----CCcEEEECCCCC
Confidence 3445666666666667777778999999996532 356777776554
No 104
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=24.71 E-value=2.2e+02 Score=19.05 Aligned_cols=74 Identities=12% Similarity=0.024 Sum_probs=44.1
Q ss_pred EcCCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCC--CccCCeEE
Q 044197 79 ETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMS--ADLDHIKA 156 (202)
Q Consensus 79 e~~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~--vd~~~I~A 156 (202)
..++...|.-.+-|+.|.++.|.-..+|.-.-.+..... .....++.|. ..-.+.++.. -+....+|
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~---~~~~~~gt~~--------~~s~l~v~~~~~~~~~~y~C 79 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTP---PVPNSDGTYS--------VSSQLTVSPSDWNSGDTYTC 79 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccc---cccCCCCCEE--------EEEEEEECHHHhCCCCCEEE
Confidence 456788899999999999999988664543323222010 1222333332 2223555544 37788888
Q ss_pred EEeCCEE
Q 044197 157 HMENGIL 163 (202)
Q Consensus 157 ~~~~GvL 163 (202)
...+.-|
T Consensus 80 ~v~h~~~ 86 (95)
T cd00098 80 VVTHESL 86 (95)
T ss_pred EEEeCCC
Confidence 8877655
No 105
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=24.59 E-value=3.1e+02 Score=22.24 Aligned_cols=55 Identities=11% Similarity=0.198 Sum_probs=30.3
Q ss_pred CCCCccceEEEEEeCeEEEEEEEeecCCCc-cccccCceEE---EEeeeccEEEEEEECCCC
Q 044197 91 LGMKKDNVKIEVEENRVLRVSGERKSNDYY-KEGVEGEKWH---RAERTFGKFWRQFRMPMS 148 (202)
Q Consensus 91 PG~~~edI~V~v~~~~~L~I~g~~~~~~~~-~~~~~~~~~~---~~er~~g~f~r~~~LP~~ 148 (202)
..+.++++.| ++ |.|+|++.+...... ........+. .....+|.|+-++.+|..
T Consensus 33 ~~~~~~nv~v--~~-G~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~ 91 (235)
T cd08023 33 YTYRPENAYV--ED-GNLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG 91 (235)
T ss_pred EeCCCCCeEE--EC-CEEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC
Confidence 3456667654 47 789999887551000 0000111111 123467899999999854
No 106
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=24.02 E-value=77 Score=21.52 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=16.6
Q ss_pred eCCEEEEEEeccCcccCCCCeEEEecC
Q 044197 159 ENGILRVTEPKLAEEKKRQPKVINIDE 185 (202)
Q Consensus 159 ~~GvL~I~iPK~~~~~~~~~r~I~I~~ 185 (202)
.+|.|++.+||+.-+ ..++.++.
T Consensus 9 ~~g~l~~YvpKKDLE----E~Vv~~e~ 31 (67)
T TIGR02934 9 RAGELSAYVPKKDLE----EVIVSVEK 31 (67)
T ss_pred CCCCEEEEEECCcch----hheeeeec
Confidence 457899999999765 34566653
No 107
>PF06988 NifT: NifT/FixU protein; InterPro: IPR009727 This family consists of several NifT and FixU bacterial proteins. The function of NifT is unknown although it is thought that the protein may be involved in biosynthesis of the FeMo cofactor of nitrogenase although perturbation of nifT expression in Klebsiella pneumoniae has only a limited effect on nitrogen fixation [].; GO: 0009399 nitrogen fixation; PDB: 2JN4_A.
Probab=23.97 E-value=80 Score=21.25 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=15.4
Q ss_pred eCCEEEEEEeccCcccCCCCeEEEec
Q 044197 159 ENGILRVTEPKLAEEKKRQPKVINID 184 (202)
Q Consensus 159 ~~GvL~I~iPK~~~~~~~~~r~I~I~ 184 (202)
.+|.|++.+||+.-+ ...+.++
T Consensus 9 ~~G~ls~YVpKKDLE----E~Vv~~E 30 (64)
T PF06988_consen 9 GAGGLSAYVPKKDLE----EPVVSME 30 (64)
T ss_dssp SS--EEEEETTTTEE----EEEEEES
T ss_pred CCcCEEEEEeCCccc----cceeeee
Confidence 458999999999775 4567775
No 108
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=23.15 E-value=56 Score=20.71 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=11.8
Q ss_pred CCCcchhhHHHHHHHHhhhh
Q 044197 1 MAKPRILAMTMLFLVMAATL 20 (202)
Q Consensus 1 ~~~~~~~~~~~~~~~m~~~~ 20 (202)
|.|+.+.+++...+.++.+.
T Consensus 1 MmKk~i~~i~~~l~~~~~l~ 20 (48)
T PRK10081 1 MVKKTIAAIFSVLVLSTVLT 20 (48)
T ss_pred ChHHHHHHHHHHHHHHHHHh
Confidence 66777777665445444443
No 109
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=22.95 E-value=5e+02 Score=22.78 Aligned_cols=14 Identities=14% Similarity=0.373 Sum_probs=8.8
Q ss_pred eeccEEEEEEECCC
Q 044197 134 RTFGKFWRQFRMPM 147 (202)
Q Consensus 134 r~~g~f~r~~~LP~ 147 (202)
..||+++-+..||.
T Consensus 109 f~YGrvEvRAKlP~ 122 (321)
T cd02179 109 FKYGRVEIRAKLPK 122 (321)
T ss_pred EeccEEEEEEEccC
Confidence 45666666666664
No 110
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=22.93 E-value=2e+02 Score=25.10 Aligned_cols=50 Identities=16% Similarity=0.083 Sum_probs=29.1
Q ss_pred CccceEEEEEeCeEEEEEEEeecCCCccccccCceEE---EEeeeccEEEEEEECCCC
Q 044197 94 KKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWH---RAERTFGKFWRQFRMPMS 148 (202)
Q Consensus 94 ~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~---~~er~~g~f~r~~~LP~~ 148 (202)
.++++ .+.+ +.|+|++.+.... ........+. +....+|.|+-++.||..
T Consensus 39 ~~~nv--~v~~-G~L~I~a~~~~~~--~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~ 91 (295)
T cd02180 39 DPDAV--TTIN-GSLRITMDQFRNH--GLNFRSGMLQSWNKLCFTGGYIEASASLPGK 91 (295)
T ss_pred cCcCe--EecC-CeEEEEEEeecCC--CCCEEEEEEEECCcceeeCCEEEEEEECCCC
Confidence 34555 4567 7899999875410 0001112222 234578999999999963
No 111
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=22.33 E-value=77 Score=22.43 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=16.8
Q ss_pred CCCccceEEEEEeCeEEEEEEEee
Q 044197 92 GMKKDNVKIEVEENRVLRVSGERK 115 (202)
Q Consensus 92 G~~~edI~V~v~~~~~L~I~g~~~ 115 (202)
-|+++.|.+.... |.|.|+|+.=
T Consensus 21 sfd~~~I~l~T~~-G~L~I~G~~L 43 (85)
T TIGR02892 21 SFDDEEILLETVM-GFLTIKGQEL 43 (85)
T ss_pred EECCCEEEEEeCc-EEEEEEccee
Confidence 3567778887777 7888888763
No 112
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=22.26 E-value=2.9e+02 Score=19.55 Aligned_cols=31 Identities=6% Similarity=0.222 Sum_probs=27.5
Q ss_pred cEEEEEEECCCCCccCCeEEEEeCCEEEEEE
Q 044197 137 GKFWRQFRMPMSADLDHIKAHMENGILRVTE 167 (202)
Q Consensus 137 g~f~r~~~LP~~vd~~~I~A~~~~GvL~I~i 167 (202)
-...-+|.+|.++..+++...+...-|+|.+
T Consensus 15 ~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 15 DEVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred CEEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 3466778999999999999999999999988
No 113
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=21.90 E-value=2.7e+02 Score=19.06 Aligned_cols=69 Identities=9% Similarity=0.177 Sum_probs=40.6
Q ss_pred CCeEEEEEEeCCCCccceEEEEEeCeEEEEEEEeecCCCccccccCceEEEEeeeccEEEEEEECCCCCccCCeEEEEeC
Q 044197 81 PTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIKAHMEN 160 (202)
Q Consensus 81 ~~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~I~A~~~~ 160 (202)
++...|.-.+-||.|.+|+|+-..++.....+..... .....++.|. ....+.++.. +.+..+|...+
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~---~~~~~d~ty~--------~~s~l~v~~~-~~~~ytC~V~H 81 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGE---ILPNGDGTYQ--------LWVTLEVPPE-DKARYSCRVEH 81 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccc---eEECCCCeEE--------EEEEEEECCC-CCCEEEEEEEe
Confidence 4678999999999999999998764532223321110 1112222222 2235666555 67788888765
Q ss_pred C
Q 044197 161 G 161 (202)
Q Consensus 161 G 161 (202)
.
T Consensus 82 ~ 82 (93)
T cd07698 82 S 82 (93)
T ss_pred C
Confidence 4
No 114
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=21.58 E-value=1.4e+02 Score=22.51 Aligned_cols=15 Identities=7% Similarity=0.023 Sum_probs=9.8
Q ss_pred eeEEEcCCeEEEEEE
Q 044197 75 ADLMETPTAHVITLD 89 (202)
Q Consensus 75 idv~e~~~~y~i~~d 89 (202)
+++.++++.+.|+..
T Consensus 87 ~~~~~~~~~L~I~~~ 101 (166)
T PF13349_consen 87 PEISVEGGTLTIKSK 101 (166)
T ss_pred EEEEEcCCEEEEEEe
Confidence 566666666666665
No 115
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=21.51 E-value=1.2e+02 Score=20.05 Aligned_cols=29 Identities=10% Similarity=0.200 Sum_probs=21.2
Q ss_pred CeEEEEEEeCCCCccce-EEEEEeCeEEEE
Q 044197 82 TAHVITLDILGMKKDNV-KIEVEENRVLRV 110 (202)
Q Consensus 82 ~~y~i~~dlPG~~~edI-~V~v~~~~~L~I 110 (202)
..|.|.+..+|+.+... .|.+..+....|
T Consensus 48 g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~ 77 (82)
T PF13620_consen 48 GTYTLRVSAPGYQPQTQENVTVTAGQTTTV 77 (82)
T ss_dssp EEEEEEEEBTTEE-EEEEEEEESSSSEEE-
T ss_pred EeEEEEEEECCcceEEEEEEEEeCCCEEEE
Confidence 68999999999999888 588875444443
No 116
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=20.51 E-value=2.5e+02 Score=18.67 Aligned_cols=28 Identities=11% Similarity=0.070 Sum_probs=23.0
Q ss_pred CCeEEEEEEeCCCCccceEEEEEeCeEE
Q 044197 81 PTAHVITLDILGMKKDNVKIEVEENRVL 108 (202)
Q Consensus 81 ~~~y~i~~dlPG~~~edI~V~v~~~~~L 108 (202)
++...|.-.+-||.|.+|+|....++..
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~ 35 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKE 35 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEE
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccce
Confidence 6788889999999999999998653543
No 117
>PF07706 TAT_ubiq: Aminotransferase ubiquitination site; InterPro: IPR011715 This region contains a probable site of ubiquitination that ensures rapid degradation of tyrosine aminotransferase in rats. The half life of the enzyme in vivo is about 2-4 hours. The enzyme contains at least 2 phosphorylation sites including CAPK at Ser29 and, at the other end of the protein, a casein kinase II site at S*QEECDK. This region of TAT is probably primarily related to regulatory events. Most other transaminases are much more stable and are not phosphorylated.; GO: 0004838 L-tyrosine:2-oxoglutarate aminotransferase activity, 0030170 pyridoxal phosphate binding, 0009074 aromatic amino acid family catabolic process
Probab=20.38 E-value=1.2e+02 Score=18.42 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=23.2
Q ss_pred CeEEEEEEeCCCCccceEEEEEeCeEEEEEEEe
Q 044197 82 TAHVITLDILGMKKDNVKIEVEENRVLRVSGER 114 (202)
Q Consensus 82 ~~y~i~~dlPG~~~edI~V~v~~~~~L~I~g~~ 114 (202)
|.|+|.++--|.-+.=+++.|+.++.-.+-|+.
T Consensus 2 d~Y~Iqmngng~~psvldvhVn~~Gr~~vpgK~ 34 (40)
T PF07706_consen 2 DSYVIQMNGNGVLPSVLDVHVNINGRSSVPGKM 34 (40)
T ss_pred CCEEEEEcCCCCCCcceeeEEecCCcccCcccc
Confidence 679999999998888777777654444444443
No 118
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=20.32 E-value=76 Score=23.00 Aligned_cols=16 Identities=19% Similarity=0.497 Sum_probs=13.0
Q ss_pred EEEEeCCEEEEEEecc
Q 044197 155 KAHMENGILRVTEPKL 170 (202)
Q Consensus 155 ~A~~~~GvL~I~iPK~ 170 (202)
.+.+.+|||+|+++..
T Consensus 30 D~e~~~gVLti~~~~~ 45 (97)
T TIGR03422 30 DVEYSSGVLTLELPSV 45 (97)
T ss_pred ccccCCCEEEEEECCC
Confidence 5678899999999643
Done!