RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 044197
(202 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 146 bits (370), Expect = 2e-45
Identities = 62/148 (41%), Positives = 82/148 (55%), Gaps = 5/148 (3%)
Query: 36 SPFFDMMFPMTEEPLRVLEQTPLTIAKGADHHQTLALARADLMETPTAHVITLDILGMKK 95
S FD + +P I+ G A AR D ETP AHV D+ G+KK
Sbjct: 7 SNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKK 66
Query: 96 DNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIK 155
+ VK+EVE+ VL VSGER + + +KWHR ER+ GKF R+FR+ A ++ +K
Sbjct: 67 EEVKVEVEDGNVLVVSGERTKE----KEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVK 122
Query: 156 AHMENGILRVTEPKLAEEKKRQPKVINI 183
A +ENG+L VT PK AE KK + K I I
Sbjct: 123 AGLENGVLTVTVPK-AEVKKPEVKAIQI 149
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 122 bits (310), Expect = 8e-37
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 74 RADLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAE 133
R D+ E V+ D+ G+ +++++++ +L + GERKS + E E++ R E
Sbjct: 6 RVDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKS----ESSTETERFSRIE 60
Query: 134 RTFGKFWRQFRMPMSADLDHIKAHMENGILRVTEPKLAE 172
R +G F R+F +P SAD D I A NG+L + PK
Sbjct: 61 RRYGSFHRRFALPDSADADGITAAGRNGVLEIRIPKRPA 99
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 116 bits (293), Expect = 1e-33
Identities = 22/158 (13%), Positives = 48/158 (30%), Gaps = 9/158 (5%)
Query: 28 NALMPYTQSPFFDMMFPMTEEPLRVLEQTPLTIAKGADHHQTLALARADLMETPTAHVIT 87
+ + + ++E +
Sbjct: 12 ERMFKEFFATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISIIEGDQHIKVI 71
Query: 88 LDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAE-RTFGKFWRQFRMP 146
+ G+ K+++ + + L + +R E E+ +E + +R ++P
Sbjct: 72 AWLPGVNKEDIILNAVGD-TLEIRAKRSP----LMITESERIIYSEIPEEEEIYRTIKLP 126
Query: 147 MSADLDHIKAHMENGILRVTEPKLAEEKKRQPKVINID 184
+ ++ A ENG+L V PK K INI+
Sbjct: 127 ATVKEENASAKFENGVLSVILPKAESSI---KKGINIE 161
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 109 bits (275), Expect = 2e-31
Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 9/110 (8%)
Query: 68 QTLALARADLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGE 127
L D+ E V+ D+ G K+ +K V L + ER+ +
Sbjct: 20 YELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAERE--------ITEP 71
Query: 128 KWHRAERTFGKFWRQFRMPMSADLD-HIKAHMENGILRVTEPKLAEEKKR 176
+ + R+P + D I ENG+L + P +
Sbjct: 72 GVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTSVFK 121
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 66.0 bits (161), Expect = 1e-14
Identities = 14/108 (12%), Positives = 37/108 (34%), Gaps = 13/108 (12%)
Query: 75 ADLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAER 134
A + P + LD+ + + ++V + + V + ++ R
Sbjct: 4 AQVPTDPGYFSVLLDVKHFSPEEISVKVVGDH-VEVHARHEERP--------DEHGFIAR 54
Query: 135 TFGKFWRQFRMPMSADLDHIKAHM-ENGILRVTEPKLAEEKKRQPKVI 181
+F R++R+P D + + + G+L + + +
Sbjct: 55 ---EFHRRYRLPPGVDPAAVTSALSPEGVLSIQATPASAQASLPSPPA 99
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 64.5 bits (157), Expect = 5e-14
Identities = 19/112 (16%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 75 ADLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAER 134
+++ VI LD+ +++ ++V+E+ V + G+ + R
Sbjct: 5 SEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVE-IHGKHNERQ--------DDHGYISR 55
Query: 135 TFGKFWRQFRMPMSADLDHIKAHM-ENGILRVTEPKL--AEEKKRQPKVINI 183
+F R++R+P + D + + +G+L + PK+ + + I +
Sbjct: 56 ---EFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPV 104
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 64.6 bits (157), Expect = 2e-13
Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 26/160 (16%)
Query: 29 ALMPYTQSPFFDMMFPMTEEPLRVLEQTPLTIAKGADHHQTLALARADLMETPTAHVITL 88
L+ P + P P L +++ + L
Sbjct: 31 HLLESDLFPTSTSLSPFYLRPPSFLR-----------APSWFDTGLSEMRLEKDRFSVNL 79
Query: 89 DILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMS 148
D+ + +K++V + + V G+ + E+ +F R++R+P
Sbjct: 80 DVKHFSPEELKVKVLGDV-IEVHGKHE-----------ERQDEHGFISREFHRKYRIPAD 127
Query: 149 ADLDHIKAHM-ENGILRVTEPKLAEEKKRQPKVINIDEES 187
D I + + +G+L V P+ + I I E
Sbjct: 128 VDPLTITSSLSSDGVLTVNGPRKQVSGP--ERTIPITREE 165
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 60.9 bits (148), Expect = 6e-13
Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 13/94 (13%)
Query: 85 VITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFR 144
+ LD+ + +K++V + V+ V G+ + ++ R +F R++R
Sbjct: 9 SVNLDVKHFSPEELKVKVLGD-VIEVHGKHEERQ--------DEHGFISR---EFHRKYR 56
Query: 145 MPMSADLDHIKAHM-ENGILRVTEPKLAEEKKRQ 177
+P D I + M +G+L V P+ +
Sbjct: 57 IPADVDPLTITSSMSSDGVLTVNGPRKQVSGPER 90
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 60.4 bits (147), Expect = 1e-12
Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 13/92 (14%)
Query: 79 ETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGK 138
T ++LD+ D + ++ ++ V ++G+ + ++ R
Sbjct: 4 HTADRWRVSLDVNHFAPDELTVKTKDGVVE-ITGKHAARQ--------DEHGYISRC--- 51
Query: 139 FWRQFRMPMSADLDHIKAHM-ENGILRVTEPK 169
F R++ +P D + + + G L V P
Sbjct: 52 FTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPM 83
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 57.5 bits (138), Expect = 3e-10
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Query: 92 GMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADL 151
+VK+ + N+V V G E + + + +F++ F P D
Sbjct: 244 HFAPKDVKVWAKGNKVY-VHGVTGK--------EEKTENASHSEHREFYKAFVTPEVVDA 294
Query: 152 DHIKAHMENGILRVTEPKL 170
+A + +G++ V P
Sbjct: 295 SKTQAEIVDGLMVVEAPLF 313
Score = 44.4 bits (104), Expect = 8e-06
Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 16/131 (12%)
Query: 36 SPFFDMMFPMTEEPLRVLEQTPLTIAKGADHHQTLALARADLMETPTAHVITLDILGMKK 95
+ F +M M+ R G A + + ++ K
Sbjct: 68 NAFESVMKEMSAIQPREFHPELEYTQPGELDFLKDAYEVGK--DGRLHFKVYFNVKNFKA 125
Query: 96 DNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIK 155
+ + I+ ++N+ L V ++ + G R +P S D +HI+
Sbjct: 126 EEITIKADKNK-LVVRAQKSVACGDA---------AMSESVG---RSIPLPPSVDRNHIQ 172
Query: 156 AHM-ENGILRV 165
A + + +L +
Sbjct: 173 ATITTDDVLVI 183
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A
{Aspergillus phoenicis} SCOP: b.50.1.2
Length = 325
Score = 29.2 bits (66), Expect = 0.81
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 20 LMNMA-SQANALMPYTQSPFFDMMFPMTEEPL 50
L+ +A S N + P Q+ FFD + + PL
Sbjct: 120 LLGLAFSSINTVQPKAQTTFFDTVKSQLDSPL 151
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors,
macrocycle; HET: MAN PP7; 0.95A {Penicillium
janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E*
1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A*
2web_A* 2wec_A* 2wed_A* 3app_A
Length = 323
Score = 29.1 bits (66), Expect = 0.86
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 20 LMNMA-SQANALMPYTQSPFFDMMFPMTEEPL 50
L+ +A S N + P +Q+ FFD + +PL
Sbjct: 121 LLGLAFSSINTVQPQSQTTFFDTVKSSLAQPL 152
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response; HET:
ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 27.5 bits (61), Expect = 1.3
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 74 RADLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYK 121
R + + P V+T+ G+ K NV I+ E L V E D Y
Sbjct: 4 RHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQI-LSVVIEVPGEDAYY 50
>2xhy_A BGLA, 6-phospho-beta-glucosidase BGLA; hydrolase, glycosidase;
2.30A {Escherichia coli}
Length = 479
Score = 27.5 bits (62), Expect = 3.3
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 11/54 (20%)
Query: 22 NMASQANALMPYTQSPFFDMMFPMTEEPLRVLEQTPLTIAKGADHHQTLALARA 75
N + L Y S +++ E P + Q HHQ +A A A
Sbjct: 183 NQRNWRAPLFGYCCS---GVVYTEHENPEETMYQ--------VLHHQFVASALA 225
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 27.4 bits (60), Expect = 3.5
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 58 LTIAKGADHHQTLALARADLMETPTAHVITLD-ILGMKKDNVKIEVE 103
+ H + A AD V +D I+ +K+++E
Sbjct: 298 VPFNHEGGHGGFVKPADADHEPADLIDVRPIDDIIDDAPTFIKMDIE 344
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.15.1.3
Length = 134
Score = 25.4 bits (55), Expect = 8.5
Identities = 5/43 (11%), Positives = 15/43 (34%), Gaps = 10/43 (23%)
Query: 65 DHHQTLALARADLMETPTAHVITLDILGMKKDNVKIEVEENRV 107
D ++ P + V+ + + + +D ++ E
Sbjct: 23 DSYEK----------GPDSVVVHVYVKEICRDTSRVLFREQDF 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.130 0.371
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,060,754
Number of extensions: 181246
Number of successful extensions: 411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 27
Length of query: 202
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 113
Effective length of database: 4,216,824
Effective search space: 476501112
Effective search space used: 476501112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)