RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 044197
         (202 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 96.0 bits (238), Expect = 5e-26
 Identities = 63/148 (42%), Positives = 81/148 (54%), Gaps = 5/148 (3%)

Query: 36  SPFFDMMFPMTEEPLRVLEQTPLTIAKGADHHQTLALARADLMETPTAHVITLDILGMKK 95
           S  FD    +  +P          I+ G       A AR D  ETP AHV   D+ G+KK
Sbjct: 6   SNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKK 65

Query: 96  DNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERTFGKFWRQFRMPMSADLDHIK 155
           + VK+EVE+  VL VSGER      K     +KWHR ER+ GKF R+FR+   A ++ +K
Sbjct: 66  EEVKVEVEDGNVLVVSGERTKEKEDKN----DKWHRVERSSGKFVRRFRLLEDAKVEEVK 121

Query: 156 AHMENGILRVTEPKLAEEKKRQPKVINI 183
           A +ENG+L VT PK AE KK + K I I
Sbjct: 122 AGLENGVLTVTVPK-AEVKKPEVKAIQI 148


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 74.3 bits (182), Expect = 5e-18
 Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 7/109 (6%)

Query: 76  DLMETPTAHVITLDILGMKKDNVKIEVEENRVLRVSGERKSNDYYKEGVEGEKWHRAERT 135
            ++E      +   + G+ K+++ +    + +   +          E       +     
Sbjct: 14  SIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESER----IIYSEIPE 69

Query: 136 FGKFWRQFRMPMSADLDHIKAHMENGILRVTEPKLAEEKKRQPKVINID 184
             + +R  ++P +   ++  A  ENG+L V  PK         K INI+
Sbjct: 70  EEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSI---KKGINIE 115


>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19,
           USP19 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 26.1 bits (57), Expect = 1.8
 Identities = 5/43 (11%), Positives = 15/43 (34%), Gaps = 10/43 (23%)

Query: 65  DHHQTLALARADLMETPTAHVITLDILGMKKDNVKIEVEENRV 107
           D ++            P + V+ + +  + +D  ++   E   
Sbjct: 23  DSYEK----------GPDSVVVHVYVKEICRDTSRVLFREQDF 55


>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 205

 Score = 25.4 bits (55), Expect = 4.1
 Identities = 6/69 (8%), Positives = 17/69 (24%), Gaps = 2/69 (2%)

Query: 100 IEVEENRVLRVSGERKSNDYYKEGVEGEKWHR--AERTFGKFWRQFRMPMSADLDHIKAH 157
           +      +++    +       +     K  R   +   G F +    P     +     
Sbjct: 26  VLAGPCPIVQRKTAQTDGYEAVQIGYAPKAERKVNKPMQGHFAKAGVAPTRILREFRGFA 85

Query: 158 MENGILRVT 166
            +   + V 
Sbjct: 86  PDGDSVNVD 94


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 714,762
Number of extensions: 31881
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 12
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)