BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044198
(772 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 1098 bits (2840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/754 (69%), Positives = 636/754 (84%), Gaps = 8/754 (1%)
Query: 3 FRKAKSPNRLIVEEALQDDNSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDDDT 62
++ PNRLIV+EA+ +DNSVV L M++L +F+ DT+L+KGK+RR +C + DDT
Sbjct: 17 LKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDT 76
Query: 63 CDASKIRMNKVVRSNLRLRLGDLVSVKICNDVVNATKMHVLPLHDTIEGITGNLFDVYLK 122
C KIRMN+VVR+NLR+RLGD++S++ C DV ++HVLP+ DT+EGITGNLF+VYLK
Sbjct: 77 CSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLK 136
Query: 123 PYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGEYCHITPKTEIFCEGEPLKREDEDR 182
PYFL YRP+RKGD+FLVRGGMR+V+FKVV+T+P YC + P T I CEGEP+KREDE+
Sbjct: 137 PYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEE 196
Query: 183 -LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLAR 241
L++VGY+DVGG RKQL QI+E+VELPLRHP +FKA+GVKPP+GILL+GPPGTGKTL+AR
Sbjct: 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 242 AIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKT 301
A+ANETG +F INGPEIMSK+AGESESNLR+AF AEKNAP+IIFIDE+D+IAPKREKT
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 302 HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVG 361
HGEVE+RIVSQLLTLMDG+K RAHV+V+ ATNRPNSIDPALRR GRFD+E+DIG+PD G
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 362 RLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEEDT 421
RLE+L+IHTKNMKLA+DV+LE VA ETHG VGADLAALC+E A+Q IR+KMDLIDLE++T
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 422 IDAEVLSSMYVTNENLNAAVAITSPSALREIAVEVPNVRWADIGGLDTVKRELQETVQYP 481
IDAEV++S+ VT ++ A++ ++PSALRE VEVP V W DIGGL+ VKRELQE VQYP
Sbjct: 437 IDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYP 496
Query: 482 VEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 541
VEHP+ F KFGM+PS+GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE
Sbjct: 497 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 556
Query: 542 ANVRDVFDKARQSAPCVLFFDELDSIA-IQXXXXXXXXXXXXXIVNQLLTEMDGLSAKKT 600
ANVR++FDKARQ+APCVLFFDELDSIA + ++NQ+LTEMDG+S KK
Sbjct: 557 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 616
Query: 601 VFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIA 660
VF+IGATNRPD+IDPA+LRPGRLDQLIYIPLPDE SR+ I K+ LRKSPV+KD+DL+ +A
Sbjct: 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLA 676
Query: 661 KYTHGFSGADITEICQRACKCA--IREEIEKDIKKGQRENPEGAAGE----VAEIKKEHF 714
K T+GFSGAD+TEICQRACK A E E ++ ++ NP E V EI+++HF
Sbjct: 677 KMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHF 736
Query: 715 EESMKYARRSVSDSDVRKYQAFANTLQQSRGFGS 748
EE+M++ARRSVSD+D+RKY+ FA TLQQSRGFGS
Sbjct: 737 EEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS 770
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 1097 bits (2837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/754 (69%), Positives = 636/754 (84%), Gaps = 8/754 (1%)
Query: 3 FRKAKSPNRLIVEEALQDDNSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDDDT 62
++ PNRLIV+EA+ +DNSVV L M++L +F+ DT+L+KGK+RR +C + DDT
Sbjct: 17 LKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDT 76
Query: 63 CDASKIRMNKVVRSNLRLRLGDLVSVKICNDVVNATKMHVLPLHDTIEGITGNLFDVYLK 122
C KIRMN+VVR+NLR+RLGD++S++ C DV ++HVLP+ DT+EGITGNLF+VYLK
Sbjct: 77 CSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLK 136
Query: 123 PYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGEYCHITPKTEIFCEGEPLKREDEDR 182
PYFL YRP+RKGD+FLVRGGMR+V+FKVV+T+P YC + P T I CEGEP+KREDE+
Sbjct: 137 PYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEE 196
Query: 183 -LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLAR 241
L++VGY+D+GG RKQL QI+E+VELPLRHP +FKA+GVKPP+GILL+GPPGTGKTL+AR
Sbjct: 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 242 AIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKT 301
A+ANETG +F INGPEIMSK+AGESESNLR+AF AEKNAP+IIFIDE+D+IAPKREKT
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 302 HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVG 361
HGEVE+RIVSQLLTLMDG+K RAHV+V+ ATNRPNSIDPALRR GRFD+E+DIG+PD G
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 362 RLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEEDT 421
RLE+L+IHTKNMKLA+DV+LE VA ETHG VGADLAALC+E A+Q IR+KMDLIDLE++T
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 422 IDAEVLSSMYVTNENLNAAVAITSPSALREIAVEVPNVRWADIGGLDTVKRELQETVQYP 481
IDAEV++S+ VT ++ A++ ++PSALRE VEVP V W DIGGL+ VKRELQE VQYP
Sbjct: 437 IDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYP 496
Query: 482 VEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 541
VEHP+ F KFGM+PS+GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE
Sbjct: 497 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 556
Query: 542 ANVRDVFDKARQSAPCVLFFDELDSIA-IQXXXXXXXXXXXXXIVNQLLTEMDGLSAKKT 600
ANVR++FDKARQ+APCVLFFDELDSIA + ++NQ+LTEMDG+S KK
Sbjct: 557 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 616
Query: 601 VFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIA 660
VF+IGATNRPD+IDPA+LRPGRLDQLIYIPLPDE SR+ I K+ LRKSPV+KD+DL+ +A
Sbjct: 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLA 676
Query: 661 KYTHGFSGADITEICQRACKCA--IREEIEKDIKKGQRENPEGAAGE----VAEIKKEHF 714
K T+GFSGAD+TEICQRACK A E E ++ ++ NP E V EI+++HF
Sbjct: 677 KMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHF 736
Query: 715 EESMKYARRSVSDSDVRKYQAFANTLQQSRGFGS 748
EE+M++ARRSVSD+D+RKY+ FA TLQQSRGFGS
Sbjct: 737 EEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS 770
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/465 (68%), Positives = 397/465 (85%), Gaps = 1/465 (0%)
Query: 3 FRKAKSPNRLIVEEALQDDNSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDDDT 62
++ PNRLIV+EA+ +DNSVV L M++L +F+ DT+L+KGK+RR +C + DDT
Sbjct: 17 LKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDT 76
Query: 63 CDASKIRMNKVVRSNLRLRLGDLVSVKICNDVVNATKMHVLPLHDTIEGITGNLFDVYLK 122
C KIRMN VVR+NLR+RLGD++S++ C DV ++HVLP+ DT+EGITGNLF+VYLK
Sbjct: 77 CSDEKIRMNAVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLK 136
Query: 123 PYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGEYCHITPKTEIFCEGEPLKREDEDR 182
PYFL YRP+RKGD+FLVRGGMR+V+FKVV+T+P YC + P T I CEGEP+KREDE+
Sbjct: 137 PYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEE 196
Query: 183 -LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLAR 241
L++VGY+D+GG RKQL QI+E+VELPLRHP +FKA+GVKPP+GILL+GPPGTGKTL+AR
Sbjct: 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 242 AIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKT 301
A+ANETG +F INGPEIMSK+AGESESNLR+AF AEKNAP+IIFIDE+D+IAPKREKT
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 302 HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVG 361
HGEVE+RIVSQLLTLMDG+K RAHV+V+ ATNRPNSIDPALRR GRFD+E+DIG+PD G
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 362 RLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEEDT 421
RLE+L+IHTKNMKLA+DV+LE VA ETHG VGADLAALC+E A+Q IR+KMDLIDLE++T
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 422 IDAEVLSSMYVTNENLNAAVAITSPSALREIAVEVPNVRWADIGG 466
IDAEV++S+ VT ++ A++ ++PSALRE VEVP V W DIGG
Sbjct: 437 IDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
Score = 202 bits (514), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 100/230 (43%), Positives = 147/230 (63%), Gaps = 2/230 (0%)
Query: 459 VRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIAN 518
V + DIGG +++E V+ P+ HP +F+ G+ P RG+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 519 ECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQXXXXXXXX 578
E A F I GPE+++ GESE+N+R F++A ++AP ++F DELD+IA +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK--REKTHG 318
Query: 579 XXXXXIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRL 638
IV+QLLT MDGL + V V+ ATNRP+ IDPAL R GR D+ + I +PD RL
Sbjct: 319 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 639 QIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIE 688
+I + + ++ D+DL+ +A THG GAD+ +C A AIR++++
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/465 (68%), Positives = 397/465 (85%), Gaps = 1/465 (0%)
Query: 3 FRKAKSPNRLIVEEALQDDNSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDDDT 62
++ PNRLIV+EA+ +DNSVV L M++L +F+ DT+L+KGK+RR +C + DDT
Sbjct: 17 LKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDT 76
Query: 63 CDASKIRMNKVVRSNLRLRLGDLVSVKICNDVVNATKMHVLPLHDTIEGITGNLFDVYLK 122
C KIRMN+VVR+NLR+RLGD++S++ C DV ++HVLP+ DT+EGITGNLF+VYLK
Sbjct: 77 CSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLK 136
Query: 123 PYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGEYCHITPKTEIFCEGEPLKREDEDR 182
PYFL YRP+RKGD+FLV GGMR+V+FKVV+T+P YC + P T I CEGEP+KREDE+
Sbjct: 137 PYFLEAYRPIRKGDIFLVHGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEE 196
Query: 183 -LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLAR 241
L++VGY+D+GG RKQL QI+E+VELPLRHP +FKA+GVKPP+GILL+GPPGTGKTL+AR
Sbjct: 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 242 AIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKT 301
A+ANETG +F INGPEIMSK+AGESESNLR+AF AEKNAP+IIFIDE+D+IAPKREKT
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 302 HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVG 361
HGEVE+RIVSQLLTLMDG+K RAHV+V+ ATNRPNSIDPALRR GRFD+E+DIG+PD G
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 362 RLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEEDT 421
RLE+L+IHTKNMKLA+DV+LE VA ETHG VGADLAALC+E A+Q IR+KMDLIDLE++T
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 422 IDAEVLSSMYVTNENLNAAVAITSPSALREIAVEVPNVRWADIGG 466
IDAEV++S+ VT ++ A++ ++PSALRE VEVP V W DIGG
Sbjct: 437 IDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
Score = 202 bits (513), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 100/230 (43%), Positives = 147/230 (63%), Gaps = 2/230 (0%)
Query: 459 VRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIAN 518
V + DIGG +++E V+ P+ HP +F+ G+ P RG+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 519 ECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQXXXXXXXX 578
E A F I GPE+++ GESE+N+R F++A ++AP ++F DELD+IA +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK--REKTHG 318
Query: 579 XXXXXIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRL 638
IV+QLLT MDGL + V V+ ATNRP+ IDPAL R GR D+ + I +PD RL
Sbjct: 319 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 639 QIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIE 688
+I + + ++ D+DL+ +A THG GAD+ +C A AIR++++
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/465 (68%), Positives = 397/465 (85%), Gaps = 1/465 (0%)
Query: 3 FRKAKSPNRLIVEEALQDDNSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDDDT 62
++ PNRLIV+EA+ +DNSVV L M++L +F+ DT+L+KGK+RR +C + DDT
Sbjct: 17 LKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDT 76
Query: 63 CDASKIRMNKVVRSNLRLRLGDLVSVKICNDVVNATKMHVLPLHDTIEGITGNLFDVYLK 122
C KIRMN+VVR+NLR+ LGD++S++ C DV ++HVLP+ DT+EGITGNLF+VYLK
Sbjct: 77 CSDEKIRMNRVVRNNLRVGLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLK 136
Query: 123 PYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGEYCHITPKTEIFCEGEPLKREDEDR 182
PYFL YRP+RKGD+FLVRGGMR+V+FKVV+T+P YC + P T I CEGEP+KREDE+
Sbjct: 137 PYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEE 196
Query: 183 -LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLAR 241
L++VGY+D+GG RKQL QI+E+VELPLRHP +FKA+GVKPP+GILL+GPPGTGKTL+AR
Sbjct: 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 242 AIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKT 301
A+ANETG +F INGPEIMSK+AGESESNLR+AF AEKNAP+IIFIDE+D+IAPKREKT
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 302 HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVG 361
HGEVE+RIVSQLLTLMDG+K RAHV+V+ ATNRPNSIDPALRR GRFD+E+DIG+PD G
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 362 RLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEEDT 421
RLE+L+IHTKNMKLA+DV+LE VA ETHG VGADLAALC+E A+Q IR+KMDLIDLE++T
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 422 IDAEVLSSMYVTNENLNAAVAITSPSALREIAVEVPNVRWADIGG 466
IDAEV++S+ VT ++ A++ ++PSALRE VEVP V W DIGG
Sbjct: 437 IDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
Score = 202 bits (513), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 100/230 (43%), Positives = 147/230 (63%), Gaps = 2/230 (0%)
Query: 459 VRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIAN 518
V + DIGG +++E V+ P+ HP +F+ G+ P RG+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 519 ECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQXXXXXXXX 578
E A F I GPE+++ GESE+N+R F++A ++AP ++F DELD+IA +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK--REKTHG 318
Query: 579 XXXXXIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRL 638
IV+QLLT MDGL + V V+ ATNRP+ IDPAL R GR D+ + I +PD RL
Sbjct: 319 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 639 QIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIE 688
+I + + ++ D+DL+ +A THG GAD+ +C A AIR++++
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/441 (69%), Positives = 380/441 (86%), Gaps = 1/441 (0%)
Query: 3 FRKAKSPNRLIVEEALQDDNSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDDDT 62
++ PNRLIV+EA+ +DNSVV L M++L +F+ DT+L+KGK+RR +C + DDT
Sbjct: 17 LKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDT 76
Query: 63 CDASKIRMNKVVRSNLRLRLGDLVSVKICNDVVNATKMHVLPLHDTIEGITGNLFDVYLK 122
C KIRMN+VVR+NLR+RLGD++S++ C DV ++HVLP+ DT+EGITGNLF+VYLK
Sbjct: 77 CSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLK 136
Query: 123 PYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGEYCHITPKTEIFCEGEPLKREDEDR 182
PYFL YRP+RKGD+FLVRGGMR+V+FKVV+T+P YC + P T I CEGEP+KREDE+
Sbjct: 137 PYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEE 196
Query: 183 -LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLAR 241
L++VGY+DVGG RKQL QI+E+VELPLRHP +FKA+GVKPP+GILL+GPPGTGKTL+AR
Sbjct: 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 242 AIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKT 301
A+ANETG +F INGPEIMSK+AGESESNLR+AF AEKNAP+IIFIDE+D+IAPKREKT
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 302 HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVG 361
HGEVE+RIVSQLLTLMDG+K RAHV+V+ ATNRPNSIDPALRR GRFD+E+DIG+PD G
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 362 RLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEEDT 421
RLE+L+IHTKNMKLA+DV+LE VA ETHG VGADLAALC+E A+Q IR+KMDLIDLE++T
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 422 IDAEVLSSMYVTNENLNAAVA 442
IDAEV++S+ VT ++ A++
Sbjct: 437 IDAEVMNSLAVTMDDFRWALS 457
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 99/230 (43%), Positives = 147/230 (63%), Gaps = 2/230 (0%)
Query: 459 VRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIAN 518
V + D+GG +++E V+ P+ HP +F+ G+ P RG+L YGPPG GKTL+A+A+AN
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 519 ECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQXXXXXXXX 578
E A F I GPE+++ GESE+N+R F++A ++AP ++F DELD+IA +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK--REKTHG 318
Query: 579 XXXXXIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRL 638
IV+QLLT MDGL + V V+ ATNRP+ IDPAL R GR D+ + I +PD RL
Sbjct: 319 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 639 QIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIE 688
+I + + ++ D+DL+ +A THG GAD+ +C A AIR++++
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 426 bits (1094), Expect = e-119, Method: Compositional matrix adjust.
Identities = 209/301 (69%), Positives = 245/301 (81%), Gaps = 7/301 (2%)
Query: 448 ALREIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGC 507
ALRE VEVP V W DIGGL+ VKRELQE VQYPVEHP+ F KFGM+PS+GVLFYGPPGC
Sbjct: 1 ALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGC 60
Query: 508 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSI 567
GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVR++FDKARQ+APCVLFFDELDSI
Sbjct: 61 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI 120
Query: 568 A-IQXXXXXXXXXXXXXIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQL 626
A + ++NQ+LTEMDG+S KK VF+IGATNRPD+IDPA+LRPGRLDQL
Sbjct: 121 AKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQL 180
Query: 627 IYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCA--IR 684
IYIPLPDE SR+ I K+ LRKSPV+KD+DL+ +AK T+GFSGAD+TEICQRACK A
Sbjct: 181 IYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 240
Query: 685 EEIEKDIKKGQRENPEGAAGE----VAEIKKEHFEESMKYARRSVSDSDVRKYQAFANTL 740
E E ++ ++ NP E V EI+++HFEE+M++ARRSVSD+D+RKY+ FA TL
Sbjct: 241 IESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300
Query: 741 Q 741
Q
Sbjct: 301 Q 301
Score = 211 bits (536), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/227 (45%), Positives = 152/227 (66%), Gaps = 3/227 (1%)
Query: 177 REDEDRLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGK 236
RE + V +ED+GG+ +++E+V+ P+ HP F G+ P KG+L +GPPG GK
Sbjct: 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 62
Query: 237 TLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAP 296
TLLA+AIANE F+ I GPE+++ GESE+N+RE F+ A + AP ++F DE+DSIA
Sbjct: 63 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 122
Query: 297 KR---EKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEID 353
R G R+++Q+LT MDGM ++ +V +IGATNRP+ IDPA+ R GR D+ I
Sbjct: 123 ARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIY 182
Query: 354 IGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALC 400
I +PDE R+ +L+ + + +A+DV+LE +A+ T+GF GADL +C
Sbjct: 183 IPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 229
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 268 bits (685), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 132/242 (54%), Positives = 180/242 (74%), Gaps = 3/242 (1%)
Query: 181 DRLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLA 240
D +V YED+GG+ KQ+ +IREVVELPL+HP++F+ +G++PPKGILL+GPPGTGKTLLA
Sbjct: 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68
Query: 241 RAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREK 300
+A+A ET F+ + G E++ K GE S +++ F +A++ APSIIFIDEID+IA KR
Sbjct: 69 KAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTD 128
Query: 301 --THGEVE-KRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVP 357
T G+ E +R + QLL MDG +R V +IGATNRP+ +DPA+ R GRFD+ I++ P
Sbjct: 129 ALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAP 188
Query: 358 DEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDL 417
DE GRLE+L+IHT+ M LAEDVNLE +A+ T G VGA+L A+CTE M IRE D + +
Sbjct: 189 DEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTM 248
Query: 418 EE 419
++
Sbjct: 249 DD 250
Score = 234 bits (597), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 115/241 (47%), Positives = 161/241 (66%), Gaps = 4/241 (1%)
Query: 449 LREIAVEV---PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPP 505
+R A+EV PNVR+ DIGGL+ +E++E V+ P++HPE+FEK G+ P +G+L YGPP
Sbjct: 1 MRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPP 60
Query: 506 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELD 565
G GKTLLAKA+A E A FI + G EL+ + GE + V+D+F A++ AP ++F DE+D
Sbjct: 61 GTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEID 120
Query: 566 SIAIQXXXXXX-XXXXXXXIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLD 624
+IA + + QLL EMDG A+ V +IGATNRPD++DPA+LRPGR D
Sbjct: 121 AIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFD 180
Query: 625 QLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIR 684
++I +P PDE RL+I K RK +++D++L+ IAK T G GA++ IC A AIR
Sbjct: 181 RIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIR 240
Query: 685 E 685
E
Sbjct: 241 E 241
>pdb|2PJH|B Chain B, Strctural Model Of The P97 N Domain- Npl4 Ubd Complex
Length = 193
Score = 259 bits (661), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 120/191 (62%), Positives = 156/191 (81%), Gaps = 1/191 (0%)
Query: 9 PNRLIVEEALQDDNSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDDDTCDASKI 68
PNRLIV+EA+ +DNSVV L M++L +F+ DT+L+KGK+RR +C + DDTC KI
Sbjct: 3 PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 62
Query: 69 RMNKVVRSNLRLRLGDLVSVKICNDVVNATKMHVLPLHDTIEGITGNLFDVYLKPYFLGH 128
RMN+VVR+NLR+RLGD++S++ C DV ++HVLP+ DT+EGITGNLF+VYLKPYFL
Sbjct: 63 RMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEA 122
Query: 129 YRPVRKGDLFLVRGGMRSVKFKVVDTEPGEYCHITPKTEIFCEGEPLKREDEDR-LDDVG 187
YRP+RKGD+FLVRGGMR+V+FKVV+T+P YC + P T I CEGEP+KREDE+ L++VG
Sbjct: 123 YRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVG 182
Query: 188 YEDVGGVRKQL 198
Y+DVGG RKQL
Sbjct: 183 YDDVGGCRKQL 193
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 257 bits (656), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 131/282 (46%), Positives = 185/282 (65%), Gaps = 15/282 (5%)
Query: 453 AVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLL 512
++ VPNV WADIG L+ ++ EL + PV +P+ F+ G+ GVL GPPGCGKTLL
Sbjct: 1 SMTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60
Query: 513 AKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQXX 572
AKA+ANE NFIS+KGPELL M+ GESE VR VF +A+ SAPCV+FFDE+D++ +
Sbjct: 61 AKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPR-- 118
Query: 573 XXXXXXXXXXXIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLP 632
+VNQLLTEMDGL A++ VF++ ATNRPD+IDPA+LRPGRLD+ +++ LP
Sbjct: 119 RSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLP 178
Query: 633 DEHSRLQIFKSCLR---KSPVSKDIDLKAIAK--YTHGFSGADITEICQRACKCAIREEI 687
RL I K+ + K P+ D++L+AIA ++GAD++ + + A CA+R+E+
Sbjct: 179 PPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM 238
Query: 688 EKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSD 729
+ K G + GE+ ++ +HFEE+ K R S+S D
Sbjct: 239 ARQ-KSGNEK------GEL-KVSHKHFEEAFKKVRSSISKKD 272
Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 99/233 (42%), Positives = 150/233 (64%), Gaps = 5/233 (2%)
Query: 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIA 244
+V + D+G + ++ + P+R+P FKALG+ P G+LL GPPG GKTLLA+A+A
Sbjct: 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVA 65
Query: 245 NETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGE 304
NE+G F+ + GPE+++ GESE +R+ F A+ +AP +IF DE+D++ P+R
Sbjct: 66 NESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETG 125
Query: 305 VEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLE 364
R+V+QLLT MDG+++R V ++ ATNRP+ IDPA+ R GR DK + +G+P RL
Sbjct: 126 ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185
Query: 365 VLRIHTKNMK---LAEDVNLETVARETH--GFVGADLAALCTEGAMQCIREKM 412
+L+ TKN L DVNLE +A + + GADL+AL E ++ +R++M
Sbjct: 186 ILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM 238
>pdb|3QWZ|A Chain A, Crystal Structure Of Faf1 Ubx-P97n-Domain Complex
Length = 211
Score = 249 bits (636), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 113/192 (58%), Positives = 152/192 (79%), Gaps = 1/192 (0%)
Query: 3 FRKAKSPNRLIVEEALQDDNSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDDDT 62
++ PNRLIV+EA+ +DNSVV L M++L +F+ DT+L+KG +RR +C + DDT
Sbjct: 20 LKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGXKRREAVCIVLSDDT 79
Query: 63 CDASKIRMNKVVRSNLRLRLGDLVSVKICNDVVNATKMHVLPLHDTIEGITGNLFDVYLK 122
C KIRMN+VVR+NLR+RLGD++S++ C DV ++HVLP+ DT+EGITGNLF+VYLK
Sbjct: 80 CSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLK 139
Query: 123 PYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGEYCHITPKTEIFCEGEPLKREDEDR 182
PYFL YRP+RKGD+FLVRGGMR+V+F VV+T+P YC + P T I CEGEP+KREDE+
Sbjct: 140 PYFLEAYRPIRKGDIFLVRGGMRAVEFXVVETDPSPYCIVAPDTVIHCEGEPIKREDEEE 199
Query: 183 -LDDVGYEDVGG 193
L++VGY+D+GG
Sbjct: 200 SLNEVGYDDIGG 211
>pdb|3QC8|A Chain A, Crystal Structure Of Faf1 Ubx Domain In Complex With
P97VCP N DOMAIN Reveals The Conserved Fcisp Touch-Turn
Motif Of Ubx Domain Suffering Conformational Change
Length = 178
Score = 239 bits (611), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 108/176 (61%), Positives = 142/176 (80%)
Query: 6 AKSPNRLIVEEALQDDNSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDDDTCDA 65
+ PNRLIV+EA+ +DNSVV L M++L +F+ DT+L+KGK+RR +C + DDTC
Sbjct: 2 SNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSD 61
Query: 66 SKIRMNKVVRSNLRLRLGDLVSVKICNDVVNATKMHVLPLHDTIEGITGNLFDVYLKPYF 125
KIRMN+VVR+NLR+RLGD++S++ C DV ++HVLP+ DT+EGITGNLF+VYLKPYF
Sbjct: 62 EKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYF 121
Query: 126 LGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGEYCHITPKTEIFCEGEPLKREDED 181
L YRP+RKGD+FLVRGGMR+V+FKVV+T+P YC + P T I CEGEP+KREDE+
Sbjct: 122 LEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEE 177
>pdb|3TIW|A Chain A, Crystal Structure Of P97n In Complex With The C-Terminus
Of Gp78
pdb|3TIW|B Chain B, Crystal Structure Of P97n In Complex With The C-Terminus
Of Gp78
Length = 187
Score = 228 bits (580), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 102/171 (59%), Positives = 135/171 (78%)
Query: 3 FRKAKSPNRLIVEEALQDDNSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDDDT 62
++ PNRLIV+EA+ +DNSVV L M++L +F+ DT+L+KGK+RR +C + DDT
Sbjct: 17 LKQKSRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDT 76
Query: 63 CDASKIRMNKVVRSNLRLRLGDLVSVKICNDVVNATKMHVLPLHDTIEGITGNLFDVYLK 122
C KIRMN+VVR+NLR+RLGD++S++ C DV ++HVLP+ DT+EGITGNLF+VYLK
Sbjct: 77 CSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLK 136
Query: 123 PYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGEYCHITPKTEIFCEGE 173
PYFL YRP+RKGD+FLVRGGMR+V+FKVV+T+P YC + P T I CEGE
Sbjct: 137 PYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGE 187
>pdb|3QQ7|A Chain A, Crystal Structure Of The P97 N-Terminal Domain
pdb|3QQ8|A Chain A, Crystal Structure Of P97-N In Complex With Faf1-Ubx
Length = 186
Score = 228 bits (580), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 102/171 (59%), Positives = 135/171 (78%)
Query: 3 FRKAKSPNRLIVEEALQDDNSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDDDT 62
++ PNRLIV+EA+ +DNSVV L M++L +F+ DT+L+KGK+RR +C + DDT
Sbjct: 16 LKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDT 75
Query: 63 CDASKIRMNKVVRSNLRLRLGDLVSVKICNDVVNATKMHVLPLHDTIEGITGNLFDVYLK 122
C KIRMN+VVR+NLR+RLGD++S++ C DV ++HVLP+ DT+EGITGNLF+VYLK
Sbjct: 76 CSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLK 135
Query: 123 PYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGEYCHITPKTEIFCEGE 173
PYFL YRP+RKGD+FLVRGGMR+V+FKVV+T+P YC + P T I CEGE
Sbjct: 136 PYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGE 186
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 114/267 (42%), Positives = 176/267 (65%), Gaps = 10/267 (3%)
Query: 181 DRLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLA 240
+++ D Y+ VGG+ KQ+ +I+EV+ELP++HP++F++LG+ PKG++L+GPPGTGKTLLA
Sbjct: 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199
Query: 241 RAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREK 300
RA+A+ T C F+ ++G E++ K GE +RE F +A ++APSIIF+DEIDSI R +
Sbjct: 200 RAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVE 259
Query: 301 THG----EVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGV 356
G EV+ R + +LL +DG ++ ++ +I ATNR + +DPAL R GR D++I+
Sbjct: 260 GSGGGDSEVQ-RTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPP 318
Query: 357 PDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLID 416
P R E+LRIH++ M L +NL VA + +G GAD+ +CTE M +RE+ +
Sbjct: 319 PSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVT 378
Query: 417 LEEDTIDAEVLSSMYVTNENLNAAVAI 443
E D E L+ V N+N A+++
Sbjct: 379 QE----DFE-LAVGKVMNKNQETAISV 400
Score = 190 bits (482), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 144/232 (62%), Gaps = 1/232 (0%)
Query: 455 EVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAK 514
+VP+ + +GGL +E++E ++ PV+HPE+FE G++ +GV+ YGPPG GKTLLA+
Sbjct: 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLAR 200
Query: 515 AIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSI-AIQXXX 573
A+A+ FI + G EL+ + GE VR++F AR+ AP ++F DE+DSI + +
Sbjct: 201 AVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEG 260
Query: 574 XXXXXXXXXXIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPD 633
+ +LL ++DG K + +I ATNR D++DPALLRPGR+D+ I P P
Sbjct: 261 SGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPS 320
Query: 634 EHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIRE 685
+R +I + RK +++ I+L+ +A+ +G SGAD+ +C A A+RE
Sbjct: 321 VAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 214 bits (546), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/227 (47%), Positives = 153/227 (67%), Gaps = 3/227 (1%)
Query: 188 YEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET 247
Y D+GG+ Q+ +I+E VELPL HP++++ +G+KPPKG++L+G PGTGKTLLA+A+AN+T
Sbjct: 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240
Query: 248 GCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTH--GEV 305
FL I G E++ K G+ R+ F VA +NAPSI+FIDEID+I KR ++ GE
Sbjct: 241 SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGER 300
Query: 306 E-KRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLE 364
E +R + +LL +DG R V VI ATN+ ++DPAL R GR D++I PD + +
Sbjct: 301 EIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKK 360
Query: 365 VLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREK 411
+L IHT M L+EDVNLET+ GAD+ A+CTE + +RE+
Sbjct: 361 ILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER 407
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 138/230 (60%), Gaps = 1/230 (0%)
Query: 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAI 516
P ++DIGGL++ +E++E+V+ P+ HPE++E+ G+ P +GV+ YG PG GKTLLAKA+
Sbjct: 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236
Query: 517 ANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQXXXXXX 576
AN+ A F+ I G EL+ + G+ R +F A ++AP ++F DE+D+I +
Sbjct: 237 ANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNS 296
Query: 577 -XXXXXXXIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEH 635
+ +LL ++DG + V VI ATN+ + +DPAL+RPGR+D+ I PD
Sbjct: 297 GGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLS 356
Query: 636 SRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIRE 685
++ +I K +S+D++L+ + SGADI +C A A+RE
Sbjct: 357 TKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE 406
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 157/235 (66%), Gaps = 3/235 (1%)
Query: 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIA 244
++ ++ +GG+ +Q+ ++REV+ELPL++P+IF+ +G+KPPKG+LL+GPPGTGKTLLA+A+A
Sbjct: 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVA 236
Query: 245 NETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKR--EKTH 302
G F+ I+ K GES +RE F A+++ P IIF+DE+D+I +R E T
Sbjct: 237 ATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS 296
Query: 303 GEVE-KRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVG 361
+ E +R + +LLT MDG + +I ATNRP+++DPAL R GR D++++I +P+E G
Sbjct: 297 ADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAG 356
Query: 362 RLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLID 416
RLE+ +IHT +K + + E + + GF GAD+ TE IR+ D I+
Sbjct: 357 RLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHIN 411
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/283 (38%), Positives = 161/283 (56%), Gaps = 13/283 (4%)
Query: 444 TSPSALREIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYG 503
T P + E + + IGGL REL+E ++ P+++PE+F++ G+ P +GVL YG
Sbjct: 163 TDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYG 222
Query: 504 PPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDE 563
PPG GKTLLAKA+A ANFI ++ + GES +R++F A++ PC++F DE
Sbjct: 223 PPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDE 282
Query: 564 LDSI-AIQXXXXXXXXXXXXXIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGR 622
+D+I + + +LLT+MDG +I ATNRPD +DPALLRPGR
Sbjct: 283 VDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGR 342
Query: 623 LDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCA 682
LD+ + IPLP+E RL+IFK K + + D +A K + GF+GADI A A
Sbjct: 343 LDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFA 402
Query: 683 IREEIEKDIKKGQRENPEG---AAGEVAEIKKEHFEESMKYAR 722
IR++ + NP+ A +VAE+KK E +++Y +
Sbjct: 403 IRDDRD-------HINPDDLMKAVRKVAEVKK--LEGTIEYQK 436
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 206 bits (523), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 147/230 (63%), Gaps = 3/230 (1%)
Query: 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIA 244
DV Y DVGG + Q+ ++REVVELPL P+ F LG+ PPKGILL+GPPGTGKTL ARA+A
Sbjct: 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVA 264
Query: 245 NETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKR--EKTH 302
N T F+ + G E++ K GE +RE F +A IIF DEID++ R +
Sbjct: 265 NRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG 324
Query: 303 GEVE-KRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVG 361
G+ E +R + +L+T +DG R ++ V+ ATNRPN++DPAL R GR D++++ +PD G
Sbjct: 325 GDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEG 384
Query: 362 RLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREK 411
R + RIH+K+M + + E ++R GA+L ++CTE M IR +
Sbjct: 385 RANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR 434
Score = 172 bits (437), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 135/240 (56%), Gaps = 1/240 (0%)
Query: 446 PSALREIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPP 505
PS E P+V ++D+GG +L+E V+ P+ PE F G+ P +G+L YGPP
Sbjct: 193 PSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPP 252
Query: 506 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELD 565
G GKTL A+A+AN A FI + G EL+ + GE VR++F+ AR C++FFDE+D
Sbjct: 253 GTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEID 312
Query: 566 SI-AIQXXXXXXXXXXXXXIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLD 624
++ + + +L+T++DG + + V+ ATNRP+ +DPALLRPGR+D
Sbjct: 313 AVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRID 372
Query: 625 QLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIR 684
+ + LPD R IF+ + V + I + I++ +GA++ +C A AIR
Sbjct: 373 RKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIR 432
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 205 bits (522), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 112/243 (46%), Positives = 157/243 (64%), Gaps = 6/243 (2%)
Query: 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIAN 245
V ++DVGG + + +++EVVE L+ P F +G + PKGILL GPPGTGKTLLARA+A
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
Query: 246 ETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHG-- 303
E F I+G + + G + +R+ F A+ +AP I+FIDEID++ R G
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 304 -EVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGR 362
+ ++ ++QLL MDG S+ ++V+ ATNRP+ +DPAL R GRFDK+I + PD +GR
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 363 LEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLE--ED 420
++L IHT+N LAEDVNLE +A+ T GFVGADL L E A+ RE D I ++ E+
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEE 251
Query: 421 TID 423
ID
Sbjct: 252 AID 254
Score = 183 bits (465), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 135/228 (59%), Gaps = 2/228 (0%)
Query: 459 VRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIAN 518
V + D+GG + EL+E V++ ++ P F + G +G+L GPPG GKTLLA+A+A
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71
Query: 519 ECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQXXXXXXXX 578
E F I G + + ++ G A VRD+F +A+ APC++F DE+D++
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 579 X-XXXXIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSR 637
+NQLL EMDG +K+ + V+ ATNRPD++DPALLRPGR D+ I + PD R
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 638 LQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIRE 685
+I + R P+++D++L+ IAK T GF GAD+ + A A RE
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/243 (45%), Positives = 156/243 (64%), Gaps = 6/243 (2%)
Query: 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIAN 245
V ++DVGG + + +++EVVE L+ P F +G + PKGILL GPPGTG TLLARA+A
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAG 71
Query: 246 ETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHG-- 303
E F I+G + + G + +R+ F A+ +AP I+FIDEID++ R G
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 304 -EVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGR 362
+ ++ ++QLL MDG S+ ++V+ ATNRP+ +DPAL R GRFDK+I + PD +GR
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 363 LEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLE--ED 420
++L IHT+N LAEDVNLE +A+ T GFVGADL L E A+ RE D I ++ E+
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEE 251
Query: 421 TID 423
ID
Sbjct: 252 AID 254
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 134/228 (58%), Gaps = 2/228 (0%)
Query: 459 VRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIAN 518
V + D+GG + EL+E V++ ++ P F + G +G+L GPPG G TLLA+A+A
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAG 71
Query: 519 ECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQXXXXXXXX 578
E F I G + + ++ G A VRD+F +A+ APC++F DE+D++
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 579 X-XXXXIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSR 637
+NQLL EMDG +K+ + V+ ATNRPD++DPALLRPGR D+ I + PD R
Sbjct: 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191
Query: 638 LQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIRE 685
+I + R P+++D++L+ IAK T GF GAD+ + A A RE
Sbjct: 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/273 (42%), Positives = 160/273 (58%), Gaps = 8/273 (2%)
Query: 421 TIDAEVLS-SMYVT-NENLNAAVAITSPSALREIAV----EVPNVRWADIGGLDTVKREL 474
T+D E+L SM V + + NA V I P + I+V E P+V +AD+GGLD K+E+
Sbjct: 125 TLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEI 184
Query: 475 QETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 534
+E V+ P+ +++E+ G+ P RGVL YGPPG GKT+L KA+AN +A FI + G E +
Sbjct: 185 REAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244
Query: 535 MWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQXXXXXX-XXXXXXXIVNQLLTEMD 593
+ GE VRDVF AR++AP ++F DE+DSIA + I+ +LLT+MD
Sbjct: 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMD 304
Query: 594 GLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIP-LPDEHSRLQIFKSCLRKSPVSK 652
G V VI ATNR D +DPALLRPGRLD+ I P L D R IF + K ++
Sbjct: 305 GFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAP 364
Query: 653 DIDLKAIAKYTHGFSGADITEICQRACKCAIRE 685
+ DL ++ SGA I I Q A A+R+
Sbjct: 365 EADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 151/242 (62%), Gaps = 7/242 (2%)
Query: 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIA 244
DV Y DVGG+ Q +IRE VELPL +++ +G+ PP+G+LL+GPPGTGKT+L +A+A
Sbjct: 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVA 227
Query: 245 NETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKR--EKTH 302
N T F+ +NG E + K GE +R+ F +A +NAPSIIFIDE+DSIA KR +T
Sbjct: 228 NSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTG 287
Query: 303 GEVE-KRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDI-GVPDEV 360
+ E +RI+ +LLT MDG +V VI ATNR +++DPAL R GR D++I+ + D
Sbjct: 288 SDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRR 347
Query: 361 GRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLI---DL 417
R + M LA + +L+++ GA +AA+ E ++ +R+ +I DL
Sbjct: 348 ERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDL 407
Query: 418 EE 419
EE
Sbjct: 408 EE 409
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 199 bits (507), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 138/225 (61%), Gaps = 2/225 (0%)
Query: 461 WADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC 520
+AD+ G D K E+ E V+Y + P F+K G +GVL GPPG GKTLLAKAIA E
Sbjct: 11 FADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 521 QANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQXXXXXXXXX- 579
+ F +I G + + M+ G + VRD+F++A+++APC++F DE+D++ Q
Sbjct: 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 129
Query: 580 XXXXIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQ 639
+NQ+L EMDG + + VI ATNRPD++DPALLRPGR D+ + + LPD R Q
Sbjct: 130 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 189
Query: 640 IFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIR 684
I K +R+ P++ DID IA+ T GFSGAD+ + A A R
Sbjct: 190 ILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAAR 234
Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 99/235 (42%), Positives = 146/235 (62%), Gaps = 4/235 (1%)
Query: 188 YEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET 247
+ DV G + ++ E+VE LR P F+ LG K PKG+L+ GPPGTGKTLLA+AIA E
Sbjct: 11 FADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 248 GCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHG---E 304
F I+G + + G S +R+ F A+K AP IIFIDEID++ +R G +
Sbjct: 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 129
Query: 305 VEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLE 364
++ ++Q+L MDG + ++VI ATNRP+ +DPAL R GRFD+++ +G+PD GR +
Sbjct: 130 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 189
Query: 365 VLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEE 419
+L++H + + LA D++ +AR T GF GADLA L E A+ R ++ + E
Sbjct: 190 ILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVE 244
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/270 (38%), Positives = 161/270 (59%), Gaps = 15/270 (5%)
Query: 143 GMRSVKFKVVDTEPGEYCHITPKTEIFCEGEPLKREDEDRLDDVGYEDVGGVRKQLGQIR 202
G+ + ++DT P E+ E+ + +P + Y DVGG+ KQ+ ++
Sbjct: 147 GVNKDSYLILDTLPSEFDSRVKAMEV--DEKPTE----------TYSDVGGLDKQIEELV 194
Query: 203 EVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSK 262
E + LP++ FK +G++ PKG L++GPPGTGKTLLARA A +T FL + P+++
Sbjct: 195 EAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM 254
Query: 263 MAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKR---EKTHGEVEKRIVSQLLTLMDG 319
GE +R+AF +A++ AP+IIFIDE+D+I KR EK+ +R + +LL +DG
Sbjct: 255 YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314
Query: 320 MKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDV 379
S V V+ ATNR + +DPAL RSGR D++I+ +P E R ++L+IH++ M +D+
Sbjct: 315 FSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI 374
Query: 380 NLETVARETHGFVGADLAALCTEGAMQCIR 409
N + +AR T F GA L A+ E M +R
Sbjct: 375 NWQELARSTDEFNGAQLKAVTVEAGMIALR 404
Score = 179 bits (453), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 132/231 (57%), Gaps = 1/231 (0%)
Query: 455 EVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAK 514
E P ++D+GGLD EL E + P++ + F+ G+ +G L YGPPG GKTLLA+
Sbjct: 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLAR 233
Query: 515 AIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQXXXX 574
A A + A F+ + P+L+ M+ GE VRD F A++ AP ++F DELD+I +
Sbjct: 234 ACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDS 293
Query: 575 XXX-XXXXXXIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPD 633
+ +LL ++DG S+ V V+ ATNR D++DPALLR GRLD+ I PLP
Sbjct: 294 EKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPS 353
Query: 634 EHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIR 684
E SR QI + RK DI+ + +A+ T F+GA + + A A+R
Sbjct: 354 EDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/230 (43%), Positives = 145/230 (63%), Gaps = 6/230 (2%)
Query: 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIA 244
+V ++D+ G + ++ E+V+ L++P+ + LG K PKG+LL GPPGTGKTLLA+A+A
Sbjct: 7 NVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVA 65
Query: 245 NETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREK---- 300
E F + G + G S +R+ F A+K APSIIFIDEID+I R
Sbjct: 66 GEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVV 125
Query: 301 THGEVEKRIVSQLLTLMDGMKS-RAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDE 359
+ + ++ ++QLL MDG S A V+V+ ATNRP +DPAL R GRFD+++ + PD
Sbjct: 126 SGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDF 185
Query: 360 VGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIR 409
GR+E+L++H K +KLA DVNL+ VA+ T G GADLA + E A+ R
Sbjct: 186 NGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGR 235
Score = 182 bits (462), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 144/245 (58%), Gaps = 5/245 (2%)
Query: 452 IAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTL 511
I E PNVR+ D+ G + K E+ E V + +++PE + G +GVL GPPG GKTL
Sbjct: 1 INAEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTL 59
Query: 512 LAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQX 571
LAKA+A E F S+ G + M+ G + VRD+F+ A++ AP ++F DE+D+I
Sbjct: 60 LAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSR 119
Query: 572 XX--XXXXXXXXXXIVNQLLTEMDGLSAKKT-VFVIGATNRPDMIDPALLRPGRLDQLIY 628
+NQLL EMDG ++ V V+ ATNRP+++DPAL+RPGR D+ +
Sbjct: 120 AAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVL 179
Query: 629 IPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIE 688
+ PD + R++I K ++ ++ D++L+ +AK T G +GAD+ I A A R +
Sbjct: 180 VDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN-Q 238
Query: 689 KDIKK 693
K++++
Sbjct: 239 KEVRQ 243
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 151/240 (62%), Gaps = 7/240 (2%)
Query: 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIAN 245
V ++DV G + +++E+VE L++P F +G + PKG+LL GPPG GKT LARA+A
Sbjct: 28 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86
Query: 246 ETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHG-- 303
E F+ +G + + G + +R+ F A+++AP I+FIDEID++ KR G
Sbjct: 87 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 146
Query: 304 -EVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGR 362
+ ++ ++QLL MDG + ++V+ ATNRP+ +DPAL R GRFD++I I PD GR
Sbjct: 147 NDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 206
Query: 363 LEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIRE---KMDLIDLEE 419
++LRIH + LAEDV+L +A+ T GFVGADL L E A+ RE K+ + DLEE
Sbjct: 207 EQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEE 266
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 138/234 (58%), Gaps = 4/234 (1%)
Query: 438 NAAVAITSPSALREIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSR 497
++A + T A + E P V + D+ G + K EL+E V++ +++P F + G +
Sbjct: 9 DSAFSFTKSRA--RVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPK 65
Query: 498 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPC 557
GVL GPPG GKT LA+A+A E + FI+ G + + M+ G A VRD+F+ A++ APC
Sbjct: 66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 125
Query: 558 VLFFDELDSIAIQXXXXXXXXX-XXXXIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPA 616
++F DE+D++ + +NQLL EMDG + V+ ATNRPD++DPA
Sbjct: 126 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 185
Query: 617 LLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGAD 670
LLRPGR D+ I I PD R QI + R P+++D+DL +AK T GF GAD
Sbjct: 186 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 239
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 176 bits (446), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 134/232 (57%), Gaps = 5/232 (2%)
Query: 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIA 517
V + D+ G+ K E++E V Y ++ PE F + G +G L GPPGCGKTLLAKA+A
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVA 60
Query: 518 NECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQXXXXXX- 576
E Q F+++ G E + + G A VR +F +AR APC+++ DE+D++ +
Sbjct: 61 TEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSG 120
Query: 577 -XXXXXXXIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEH 635
+NQLL EMDG+ V V+ +TNR D++D AL+RPGRLD+ ++I LP
Sbjct: 121 FSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQ 180
Query: 636 SRLQIFKSCLRKSPVSKDIDLKA--IAKYTHGFSGADITEICQRACKCAIRE 685
R +IF+ L+ +++ + +A+ T GFSGADI IC A A RE
Sbjct: 181 ERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 134/231 (58%), Gaps = 7/231 (3%)
Query: 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIAN 245
V ++DV G+ + ++RE V+ L+ P+ F LG K PKG LL GPPG GKTLLA+A+A
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 246 ETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEV 305
E FL + G E + + G + +R F A AP I++IDEID++ KR T
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121
Query: 306 ----EKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVG 361
E++ ++QLL MDGM + HV+V+ +TNR + +D AL R GR D+ + I +P
Sbjct: 122 SNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE 181
Query: 362 RLEVLRIHTKNMKLAEDVNL--ETVARETHGFVGADLAALCTEGAMQCIRE 410
R E+ H K++KL + + +A T GF GAD+A +C E A+ RE
Sbjct: 182 RREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 151/240 (62%), Gaps = 7/240 (2%)
Query: 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIAN 245
V ++DV G + +++E+VE L++P F +G + PKG+LL GPPG GKT LARA+A
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95
Query: 246 ETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHG-- 303
E F+ +G + + G + +R+ F A+++AP I+FIDEID++ KR G
Sbjct: 96 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 155
Query: 304 -EVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGR 362
+ ++ ++QLL MDG + ++V+ ATNRP+ +DPAL R GRFD++I I PD GR
Sbjct: 156 NDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 215
Query: 363 LEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIRE---KMDLIDLEE 419
++LRIH + LAEDV+L +A+ T GFVGADL L E A+ RE K+ + DLEE
Sbjct: 216 EQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEE 275
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 138/234 (58%), Gaps = 4/234 (1%)
Query: 438 NAAVAITSPSALREIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSR 497
++A + T A + E P V + D+ G + K EL+E V++ +++P F + G +
Sbjct: 18 DSAFSFTKSRA--RVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPK 74
Query: 498 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPC 557
GVL GPPG GKT LA+A+A E + FI+ G + + M+ G A VRD+F+ A++ APC
Sbjct: 75 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134
Query: 558 VLFFDELDSIAIQXXXXXXXXX-XXXXIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPA 616
++F DE+D++ + +NQLL EMDG + V+ ATNRPD++DPA
Sbjct: 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 194
Query: 617 LLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGAD 670
LLRPGR D+ I I PD R QI + R P+++D+DL +AK T GF GAD
Sbjct: 195 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 175 bits (444), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 151/240 (62%), Gaps = 7/240 (2%)
Query: 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIAN 245
V ++DV G + +++E+VE L++P F +G + PKG+LL GPPG GKT LARA+A
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95
Query: 246 ETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHG-- 303
E F+ +G + + G + +R+ F A+++AP I+FIDEID++ KR G
Sbjct: 96 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 155
Query: 304 -EVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGR 362
+ ++ ++QLL MDG + ++V+ ATNRP+ +DPAL R GRFD++I I PD GR
Sbjct: 156 NDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 215
Query: 363 LEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIRE---KMDLIDLEE 419
++LRIH + LAEDV+L +A+ T GFVGADL L E A+ RE K+ + DLEE
Sbjct: 216 EQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEE 275
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 132/220 (60%), Gaps = 2/220 (0%)
Query: 452 IAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTL 511
+ E P V + D+ G + K EL+E V++ +++P F + G +GVL GPPG GKT
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 88
Query: 512 LAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQX 571
LA+A+A E + FI+ G + + M+ G A VRD+F+ A++ APC++F DE+D++ +
Sbjct: 89 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148
Query: 572 XXXXXXXX-XXXXIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIP 630
+NQLL EMDG + V+ ATNRPD++DPALLRPGR D+ I I
Sbjct: 149 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 208
Query: 631 LPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGAD 670
PD R QI + R P+++D+DL +AK T GF GAD
Sbjct: 209 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 175 bits (443), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 151/240 (62%), Gaps = 7/240 (2%)
Query: 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIAN 245
V ++DV G + +++E+VE L++P F +G + PKG+LL GPPG GKT LARA+A
Sbjct: 13 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 71
Query: 246 ETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHG-- 303
E F+ +G + + G + +R+ F A+++AP I+FIDEID++ KR G
Sbjct: 72 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 131
Query: 304 -EVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGR 362
+ ++ ++QLL MDG + ++V+ ATNRP+ +DPAL R GRFD++I I PD GR
Sbjct: 132 NDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 191
Query: 363 LEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIRE---KMDLIDLEE 419
++LRIH + LAEDV+L +A+ T GFVGADL L E A+ RE K+ + DLEE
Sbjct: 192 EQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEE 251
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 133/223 (59%), Gaps = 2/223 (0%)
Query: 449 LREIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCG 508
L + E P V + D+ G + K EL+E V++ +++P F + G +GVL GPPG G
Sbjct: 3 LGSVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVG 61
Query: 509 KTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIA 568
KT LA+A+A E + FI+ G + + M+ G A VRD+F+ A++ APC++F DE+D++
Sbjct: 62 KTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 121
Query: 569 IQXXXXXXXXX-XXXXIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLI 627
+ +NQLL EMDG + V+ ATNRPD++DPALLRPGR D+ I
Sbjct: 122 RKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQI 181
Query: 628 YIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGAD 670
I PD R QI + R P+++D+DL +AK T GF GAD
Sbjct: 182 AIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 224
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 168 bits (426), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 113/321 (35%), Positives = 161/321 (50%), Gaps = 18/321 (5%)
Query: 124 YFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGEYCHITPKTEIFCEGEP-----LKRE 178
YF P+ K D GGM+ + TEP P E EP + E
Sbjct: 19 YFQSMVPPIPKQDGGEQNGGMQCKPYGAGPTEPAH-----PVDERLKNLEPKMIELIMNE 73
Query: 179 DEDRLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTL 238
D V +ED+ GV I+E+V P+ P IF L PPKGILL GPPGTGKTL
Sbjct: 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGPPKGILLFGPPGTGKTL 132
Query: 239 LARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKR 298
+ + IA+++G F I+ + SK GE E +R F VA P++IFIDEIDS+ +R
Sbjct: 133 IGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR 192
Query: 299 EKTHGEVEKRIVSQLLTLMDG--MKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGV 356
E +RI ++ L +DG S ++V+GATNRP ID A RR R K + I +
Sbjct: 193 GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPL 250
Query: 357 PDEVGRLE-VLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLI 415
P+ R + V+ + +K + +E + +++ F GAD+ LC E ++ IR +
Sbjct: 251 PEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIR-SLQTA 309
Query: 416 DLEEDTIDAEVLSSMYVTNEN 436
D+ T D +V Y+ EN
Sbjct: 310 DIATITPD-QVRPIAYIDFEN 329
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 151/295 (51%), Gaps = 15/295 (5%)
Query: 449 LREIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCG 508
+ EI P V W DI G++ K ++E V +P+ P++F P +G+L +GPPG G
Sbjct: 71 MNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGPPKGILLFGPPGTG 129
Query: 509 KTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIA 568
KTL+ K IA++ A F SI L + W GE E VR +F AR P V+F DE+DS+
Sbjct: 130 KTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLL 189
Query: 569 IQXXXXXXXXXXXXXIVNQLLTEMDG--LSAKKTVFVIGATNRPDMIDPALLRPGRLDQL 626
Q I + L ++DG S++ + V+GATNRP ID A R RL +
Sbjct: 190 SQ--RGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKR 245
Query: 627 IYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIRE 685
+YIPLP+ +R QI + + K + +++ I + + FSGAD+T++C+ A IR
Sbjct: 246 LYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRS 305
Query: 686 EIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSDVRKYQAFANTL 740
DI + +V I FE + + R SVS D+ Y+ + T
Sbjct: 306 LQTADIATITPD-------QVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTF 353
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 135/236 (57%), Gaps = 7/236 (2%)
Query: 452 IAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTL 511
I E PNV+W D+ GL+ K L+E V PV+ P +F K P+ G+L YGPPG GK+
Sbjct: 41 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSY 99
Query: 512 LAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQX 571
LAKA+A E + F S+ +L++ W GESE V+ +F AR++ P ++F D++D A+
Sbjct: 100 LAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVD--ALTG 157
Query: 572 XXXXXXXXXXXXIVNQLLTEMDGL-SAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIP 630
I +LL +M+G+ + + V V+GATN P +D A+ R R ++ IYIP
Sbjct: 158 TRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIP 215
Query: 631 LPDEHSRLQIFKSCLRKSP-VSKDIDLKAIAKYTHGFSGADITEICQRACKCAIRE 685
LPD +R +F+ + +P V D + + T G+SG+DI + + A IR+
Sbjct: 216 LPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271
Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 140/230 (60%), Gaps = 9/230 (3%)
Query: 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIA 244
+V +EDV G+ ++E V LP++ P +FK KP GILL+GPPGTGK+ LA+A+A
Sbjct: 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVA 105
Query: 245 NETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGE 304
E F ++ +++SK GESE +++ F +A +N PSIIFID++D++ R + E
Sbjct: 106 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESE 165
Query: 305 VEKRIVSQLLTLMDGMKSRAH-VMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRL 363
+RI ++LL M+G+ + + V+V+GATN P +D A+RR RF++ I I +PD R
Sbjct: 166 ASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAART 223
Query: 364 EVLRIH---TKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIRE 410
+ I+ T ++ ED T+ T G+ G+D+A + + MQ IR+
Sbjct: 224 TMFEINVGDTPSVLTKED--YRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 138/237 (58%), Gaps = 8/237 (3%)
Query: 452 IAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTL 511
I +E PNV+W+D+ GL+ K L+E V P++ P +F +P RG+L +GPPG GK+
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSY 60
Query: 512 LAKAIANECQ-ANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQ 570
LAKA+A E + F SI +L++ W GESE V+++F AR++ P ++F DE+DS+
Sbjct: 61 LAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC-- 118
Query: 571 XXXXXXXXXXXXXIVNQLLTEMDGLSAKKT-VFVIGATNRPDMIDPALLRPGRLDQLIYI 629
I + L +M G+ + V+GATN P ++D A+ R R ++ IYI
Sbjct: 119 GSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYI 176
Query: 630 PLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIRE 685
PLP+ H+R +FK L + S + D + + + T G+SGADI+ I + A +R+
Sbjct: 177 PLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233
Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 133/230 (57%), Gaps = 8/230 (3%)
Query: 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIA 244
+V + DV G+ ++E V LP++ P +F P +GILL GPPGTGK+ LA+A+A
Sbjct: 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRT-PWRGILLFGPPGTGKSYLAKAVA 66
Query: 245 NETG-CYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHG 303
E F I+ +++SK GESE ++ F +A +N PSIIFIDEIDS+ R +
Sbjct: 67 TEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENES 126
Query: 304 EVEKRIVSQLLTLMDGMK-SRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGR 362
E +RI ++ L M G+ ++V+GATN P +D A+RR RF+K I I +P+ R
Sbjct: 127 EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHAR 184
Query: 363 LEVLRIH--TKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIRE 410
+ ++H T L E + + R+T G+ GAD++ + + MQ +R+
Sbjct: 185 AAMFKLHLGTTQNSLTE-ADFRELGRKTDGYSGADISIIVRDALMQPVRK 233
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 138/237 (58%), Gaps = 8/237 (3%)
Query: 452 IAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTL 511
I +E PNV+W+D+ GL+ K L+E V P++ P +F +P RG+L +GPPG GK+
Sbjct: 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSY 182
Query: 512 LAKAIANECQ-ANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQ 570
LAKA+A E + F SI +L++ W GESE V+++F AR++ P ++F DE+DS+
Sbjct: 183 LAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC-- 240
Query: 571 XXXXXXXXXXXXXIVNQLLTEMDGLSAKKT-VFVIGATNRPDMIDPALLRPGRLDQLIYI 629
I + L +M G+ + V+GATN P ++D A+ R R ++ IYI
Sbjct: 241 GSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYI 298
Query: 630 PLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIRE 685
PLP+ H+R +F+ L + S + D + + + T G+SGADI+ I + A +R+
Sbjct: 299 PLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355
Score = 152 bits (385), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 135/229 (58%), Gaps = 6/229 (2%)
Query: 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIA 244
+V + DV G+ ++E V LP++ P +F P +GILL GPPGTGK+ LA+A+A
Sbjct: 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRT-PWRGILLFGPPGTGKSYLAKAVA 188
Query: 245 NE-TGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHG 303
E F I+ +++SK GESE ++ F +A +N PSIIFIDEIDS+ R +
Sbjct: 189 TEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENES 248
Query: 304 EVEKRIVSQLLTLMDGMK-SRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGR 362
E +RI ++ L M G+ ++V+GATN P +D A+RR RF+K I I +P+ R
Sbjct: 249 EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHAR 306
Query: 363 LEVLRIHTKNMKLA-EDVNLETVARETHGFVGADLAALCTEGAMQCIRE 410
+ R+H + + + + + + + R+T G+ GAD++ + + MQ +R+
Sbjct: 307 AAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 162 bits (411), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 134/233 (57%), Gaps = 7/233 (3%)
Query: 455 EVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAK 514
E PNV+W D+ GL+ K L+E V PV+ P +F K P+ G+L YGPPG GK+ LAK
Sbjct: 20 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAK 78
Query: 515 AIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQXXXX 574
A+A E + F S+ +L++ W GESE V+ +F AR++ P ++F DE+D A+
Sbjct: 79 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVD--ALTGTRG 136
Query: 575 XXXXXXXXXIVNQLLTEMDGL-SAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPD 633
I +LL +M+G+ + + V V+GATN P +D A+ R R ++ IYIPLPD
Sbjct: 137 EGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPD 194
Query: 634 EHSRLQIFKSCLRKSP-VSKDIDLKAIAKYTHGFSGADITEICQRACKCAIRE 685
+R +F+ + +P V D + + T G+SG+DI + + A IR+
Sbjct: 195 LAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 247
Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 138/228 (60%), Gaps = 5/228 (2%)
Query: 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIA 244
+V +EDV G+ ++E V LP++ P +FK KP GILL+GPPGTGK+ LA+A+A
Sbjct: 23 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVA 81
Query: 245 NETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGE 304
E F ++ +++SK GESE +++ F +A +N PSIIFIDE+D++ R + E
Sbjct: 82 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESE 141
Query: 305 VEKRIVSQLLTLMDGMKSRAH-VMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRL 363
+RI ++LL M+G+ + + V+V+GATN P +D A+RR RF++ I I +PD R
Sbjct: 142 ASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAART 199
Query: 364 EVLRIHTKNMK-LAEDVNLETVARETHGFVGADLAALCTEGAMQCIRE 410
+ I+ + + + T+ T G+ G+D+A + + MQ IR+
Sbjct: 200 TMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 247
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 162 bits (410), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 135/236 (57%), Gaps = 7/236 (2%)
Query: 452 IAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTL 511
I E PNV+W D+ GL+ K L+E V PV+ P +F K P+ G+L YGPPG GK+
Sbjct: 26 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSY 84
Query: 512 LAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQX 571
LAKA+A E + F S+ +L++ W GESE V+ +F AR++ P ++F D++D A+
Sbjct: 85 LAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVD--ALTG 142
Query: 572 XXXXXXXXXXXXIVNQLLTEMDGL-SAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIP 630
I +LL +M+G+ + + V V+GATN P +D A+ R R ++ IYIP
Sbjct: 143 TRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIP 200
Query: 631 LPDEHSRLQIFKSCLRKSP-VSKDIDLKAIAKYTHGFSGADITEICQRACKCAIRE 685
LPD +R +F+ + +P V D + + T G+SG+DI + + A IR+
Sbjct: 201 LPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 256
Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 138/228 (60%), Gaps = 5/228 (2%)
Query: 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIA 244
+V +EDV G+ ++E V LP++ P +FK KP GILL+GPPGTGK+ LA+A+A
Sbjct: 32 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVA 90
Query: 245 NETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGE 304
E F ++ +++SK GESE +++ F +A +N PSIIFID++D++ R + E
Sbjct: 91 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESE 150
Query: 305 VEKRIVSQLLTLMDGMKSRAH-VMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRL 363
+RI ++LL M+G+ + + V+V+GATN P +D A+RR RF++ I I +PD R
Sbjct: 151 ASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAART 208
Query: 364 EVLRIHTKNMK-LAEDVNLETVARETHGFVGADLAALCTEGAMQCIRE 410
+ I+ + + + T+ T G+ G+D+A + + MQ IR+
Sbjct: 209 TMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 256
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 135/236 (57%), Gaps = 7/236 (2%)
Query: 452 IAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTL 511
I E PNV+W D+ GL+ K L+E V PV+ P +F K P+ G+L YGPPG GK+
Sbjct: 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSY 66
Query: 512 LAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQX 571
LAKA+A E + F S+ +L++ W GESE V+ +F AR++ P ++F D++D A+
Sbjct: 67 LAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVD--ALTG 124
Query: 572 XXXXXXXXXXXXIVNQLLTEMDGL-SAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIP 630
I +LL +M+G+ + + V V+GATN P +D A+ R R ++ IYIP
Sbjct: 125 TRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIP 182
Query: 631 LPDEHSRLQIFKSCLRKSP-VSKDIDLKAIAKYTHGFSGADITEICQRACKCAIRE 685
LPD +R +F+ + +P V D + + T G+SG+DI + + A IR+
Sbjct: 183 LPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 138/228 (60%), Gaps = 5/228 (2%)
Query: 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIA 244
+V +EDV G+ ++E V LP++ P +FK KP GILL+GPPGTGK+ LA+A+A
Sbjct: 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVA 72
Query: 245 NETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGE 304
E F ++ +++SK GESE +++ F +A +N PSIIFID++D++ R + E
Sbjct: 73 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESE 132
Query: 305 VEKRIVSQLLTLMDGMKSRAH-VMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRL 363
+RI ++LL M+G+ + + V+V+GATN P +D A+RR RF++ I I +PD R
Sbjct: 133 ASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAART 190
Query: 364 EVLRIHTKNMK-LAEDVNLETVARETHGFVGADLAALCTEGAMQCIRE 410
+ I+ + + + T+ T G+ G+D+A + + MQ IR+
Sbjct: 191 TMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 157/289 (54%), Gaps = 17/289 (5%)
Query: 449 LREIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCG 508
+ EI V++ DI G D K+ LQE V P PE+F +P+RG+L +GPPG G
Sbjct: 102 MNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGL-RAPARGLLLFGPPGNG 160
Query: 509 KTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIA 568
KT+LAKA+A E A F +I L + + GE E VR +F AR+ P ++F D++DS+
Sbjct: 161 KTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLL 220
Query: 569 IQXXXXXXXXXXXXXIVNQLLTEMDGLSAK--KTVFVIGATNRPDMIDPALLRPGRLDQL 626
+ + + L E DG+ + V V+GATNRP +D A+LR R +
Sbjct: 221 CE--RREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKR 276
Query: 627 IYIPLPDEHSR--LQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIR 684
+Y+ LP+E +R L C + SP+++ +L +A+ T G+SG+D+T + + A IR
Sbjct: 277 VYVSLPNEETRLLLLKNLLCKQGSPLTQK-ELAQLARMTDGYSGSDLTALAKDAALGPIR 335
Query: 685 EEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSDVRKY 733
E +K Q +N +A E+ I+ F ES+K +RSVS + Y
Sbjct: 336 E-----LKPEQVKN--MSASEMRNIRLSDFTESLKKIKRSVSPQTLEAY 377
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 131/228 (57%), Gaps = 6/228 (2%)
Query: 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIAN 245
V ++D+ G ++E+V LP P++F L P +G+LL GPPG GKT+LA+A+A
Sbjct: 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAA 170
Query: 246 ETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEV 305
E+ F I+ + SK GE E +R F VA + PSIIFID++DS+ +R + +
Sbjct: 171 ESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDA 230
Query: 306 EKRIVSQLLTLMDGMKSRA--HVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRL 363
+R+ ++ L DG++S V+V+GATNRP +D A+ R RF K + + +P+E RL
Sbjct: 231 SRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRL 288
Query: 364 EVLRIHT-KNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIRE 410
+L+ K L +AR T G+ G+DL AL + A+ IRE
Sbjct: 289 LLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 336
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 158 bits (400), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 150/294 (51%), Gaps = 16/294 (5%)
Query: 449 LREIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCG 508
L EI V W DI G D K+ LQE V P PE+F +P++G+L +GPPG G
Sbjct: 8 LDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGL-RAPAKGLLLFGPPGNG 66
Query: 509 KTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIA 568
KTLLA+A+A EC A F++I L + + G+ E VR +F AR P ++F DE+DS+
Sbjct: 67 KTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLL 126
Query: 569 IQXXXXXXXXXXXXXIVNQLLTEMDGLSAK---KTVFVIGATNRPDMIDPALLRPGRLDQ 625
+ + + L E DGL + V+ ATNRP +D A LR R +
Sbjct: 127 SE--RSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTK 182
Query: 626 LIYIPLPDEHSRLQIFKSCLRKSPVSKDID-LKAIAKYTHGFSGADITEICQRACKCAIR 684
+Y+ LPDE +R + L+K D + L+ +AK T G+SG+D+T + + A IR
Sbjct: 183 RVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIR 242
Query: 685 EEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSDVRKYQAFAN 738
E + +K + I ++ F S+K RRSV+ + Y+ ++
Sbjct: 243 ELNVEQVKCLD-------ISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQ 289
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 7/229 (3%)
Query: 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIAN 245
V + D+ G ++E+V LP P++F L P KG+LL GPPG GKTLLARA+A
Sbjct: 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRA-PAKGLLLFGPPGNGKTLLARAVAT 76
Query: 246 ETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEV 305
E FL I+ + SK G+ E +R F VA PSIIFIDE+DS+ +R + E
Sbjct: 77 ECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEA 136
Query: 306 EKRIVSQLLTLMDGMKSRA---HVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGR 362
+R+ ++ L DG+ ++V+ ATNRP +D A R RF K + + +PDE R
Sbjct: 137 SRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTR 194
Query: 363 LEVL-RIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIRE 410
+L R+ K + L +A+ T G+ G+DL AL + A++ IRE
Sbjct: 195 ELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE 243
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 32/158 (20%)
Query: 208 PLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEI--MSKMAG 265
PLRH PK IL+ GP G GKT +AR +A F+ + + + +
Sbjct: 43 PLRHEV--------TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94
Query: 266 ESESNLRE-------AFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQ-LLTLM 317
E +S +R+ A + E+N I+FIDEID I K E + +V + V + LL L+
Sbjct: 95 EVDSIIRDLTDSAGGAIDAVEQNG--IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLV 152
Query: 318 D--------GMKSRAHVMVIGA----TNRPNSIDPALR 343
+ GM H++ I + RP+ + P L+
Sbjct: 153 EGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQ 190
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 28/132 (21%)
Query: 443 ITSPSALREIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFY 502
I A R +A+ + N RW R +Q +Q P+ H ++P + +L
Sbjct: 18 IGQADAKRAVAIALRN-RW----------RRMQ--LQEPLRHE-------VTP-KNILMI 56
Query: 503 GPPGCGKTLLAKAIANECQANFISIKGPELLTMWF--GESEANVRDVFDKARQSAPCV-- 558
GP G GKT +A+ +A A FI ++ + + + E ++ +RD+ D A + V
Sbjct: 57 GPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQ 116
Query: 559 ---LFFDELDSI 567
+F DE+D I
Sbjct: 117 NGIVFIDEIDKI 128
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 17/86 (19%)
Query: 357 PDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLID 416
P+E RL++L+IH++ M L +NL +A G GA++ +CTE M +RE+
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER----- 65
Query: 417 LEEDTIDAEVLSSMYVTNENLNAAVA 442
++VT E+ AVA
Sbjct: 66 ------------RVHVTQEDFEMAVA 79
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 632 PDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIRE 685
P+E +RL I K RK +++ I+L+ IA+ G SGA++ +C A A+RE
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 64
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 17/177 (9%)
Query: 221 KPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEK 280
+P + +LL GPPG GKT LA IA+E G +GP I + G+ + L + +
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--EKPGDLAAILANSLEEGD- 92
Query: 281 NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRA------HVMVIGATNR 334
I+FIDEI ++ + E+ + V ++ + G +R +IGAT R
Sbjct: 93 ----ILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-IGQGPAARTIRLELPRFTLIGATTR 147
Query: 335 PNSID-PALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHG 390
P I P L R G + ++ P+E+ + + +++ E+ LE + R + G
Sbjct: 148 PGLITAPLLSRFG-IVEHLEYYTPEELAQGVMRDARLLGVRITEEAALE-IGRRSRG 202
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 23/144 (15%)
Query: 495 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQS 554
P +L +GPPG GKT LA IA+E N GP + E ++ + + +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEE 90
Query: 555 APCVLFFDELDSIAIQXXXXXXXXX---XXXXIVNQLLTEMDGLSAKKTVF------VIG 605
+LF DE+ ++ Q ++ Q G +A+ +IG
Sbjct: 91 G-DILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQ------GPAARTIRLELPRFTLIG 143
Query: 606 ATNRPDMID-PALLRPGRLDQLIY 628
AT RP +I P L R G ++ L Y
Sbjct: 144 ATTRPGLITAPLLSRFGIVEHLEY 167
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 17/177 (9%)
Query: 221 KPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEK 280
+P + +LL GPPG GKT LA IA+E G +GP I + G+ + L + +
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--EKPGDLAAILANSLEEGD- 92
Query: 281 NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRA------HVMVIGATNR 334
I+FIDEI ++ + E+ + V ++ + G +R +IGAT R
Sbjct: 93 ----ILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-IGQGPAARTIRLELPRFTLIGATTR 147
Query: 335 PNSID-PALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHG 390
P I P L R G + ++ P+E+ + + +++ E+ LE + R + G
Sbjct: 148 PGLITAPLLSRFG-IVEHLEYYTPEELAQGVMRDARLLGVRITEEAALE-IGRRSRG 202
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 23/144 (15%)
Query: 495 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQS 554
P +L +GPPG GKT LA IA+E N GP + E ++ + + +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEE 90
Query: 555 APCVLFFDELDSIAIQXXXXXXXXX---XXXXIVNQLLTEMDGLSAKKTVF------VIG 605
+LF DE+ ++ Q ++ Q G +A+ +IG
Sbjct: 91 G-DILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQ------GPAARTIRLELPRFTLIG 143
Query: 606 ATNRPDMID-PALLRPGRLDQLIY 628
AT RP +I P L R G ++ L Y
Sbjct: 144 ATTRPGLITAPLLSRFGIVEHLEY 167
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 17/177 (9%)
Query: 221 KPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEK 280
+P + +LL GPPG GKT LA IA+E G +GP I + G+ + L + +
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--EKPGDLAAILANSLEEGD- 92
Query: 281 NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRA------HVMVIGATNR 334
I+FIDEI ++ + E+ + V ++ + G +R +IGAT R
Sbjct: 93 ----ILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-IGQGPAARTIRLELPRFTLIGATTR 147
Query: 335 PNSID-PALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHG 390
P I P L R G + ++ P+E+ + + +++ E+ LE + R + G
Sbjct: 148 PGLITAPLLSRFG-IVEHLEYYTPEELAQGVMRDARLLGVRITEEAALE-IGRRSRG 202
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 23/144 (15%)
Query: 495 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQS 554
P +L +GPPG GKT LA IA+E N GP + E ++ + + +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEE 90
Query: 555 APCVLFFDELDSIAIQXXXXXXXXX---XXXXIVNQLLTEMDGLSAKKTVF------VIG 605
+LF DE+ ++ Q ++ Q G +A+ +IG
Sbjct: 91 G-DILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQ------GPAARTIRLELPRFTLIG 143
Query: 606 ATNRPDMID-PALLRPGRLDQLIY 628
AT RP +I P L R G ++ L Y
Sbjct: 144 ATTRPGLITAPLLSRFGIVEHLEY 167
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 356 VPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLI 415
+PD GR + RIH+K+M + + E ++R GA+L ++CTE M IR + +
Sbjct: 7 LPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK-V 65
Query: 416 DLEEDTIDA 424
E+D + A
Sbjct: 66 ATEKDFLKA 74
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 631 LPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREE---- 686
LPD R IF+ + V + I + I++ +GA++ +C A AIR
Sbjct: 7 LPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVA 66
Query: 687 IEKDIKK 693
EKD K
Sbjct: 67 TEKDFLK 73
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 17/86 (19%)
Query: 357 PDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLID 416
P+E RL++L+IH++ L +NL +A G GA++ +CTE +RE+
Sbjct: 3 PNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRER----- 57
Query: 417 LEEDTIDAEVLSSMYVTNENLNAAVA 442
++VT E+ AVA
Sbjct: 58 ------------RVHVTQEDFEXAVA 71
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 630 PLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIRE 685
P P+E +RL I K RK +++ I+L+ IA+ G SGA++ +C A A+RE
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRE 56
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 222 PPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESES----NLREAFNV 277
P +LL GPP +GKT LA IA E+ F+ I P+ KM G SE+ +++ F+
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDD 118
Query: 278 AEKNAPSIIFIDEIDSI 294
A K+ S + +D+I+ +
Sbjct: 119 AYKSQLSCVVVDDIERL 135
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 494 SPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE--ANVRDVFDKA 551
+P VL GPP GKT LA IA E FI I P+ + + F E+ ++ +FD A
Sbjct: 61 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGFSETAKCQAMKKIFDDA 119
Query: 552 RQSAPCVLFFDELDSI 567
+S + D+++ +
Sbjct: 120 YKSQLSCVVVDDIERL 135
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 222 PPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESES----NLREAFNV 277
P +LL GPP +GKT LA IA E+ F+ I P+ KM G SE+ +++ F+
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDD 119
Query: 278 AEKNAPSIIFIDEIDSI 294
A K+ S + +D+I+ +
Sbjct: 120 AYKSQLSCVVVDDIERL 136
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 494 SPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE--ANVRDVFDKA 551
+P VL GPP GKT LA IA E FI I P+ + + F E+ ++ +FD A
Sbjct: 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGFSETAKCQAMKKIFDDA 120
Query: 552 RQSAPCVLFFDELDSI 567
+S + D+++ +
Sbjct: 121 YKSQLSCVVVDDIERL 136
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 224 KGILLHGPPGTGKTLLARAIANETGCY--FLCINGPEIMSKMAGESE---SNLREAFNVA 278
+ +LL GPPGTGKT LA AIA E G F G E+ S ++E N R A +
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEVLXENFRRAIGLR 137
Query: 279 EKNAPSIIFID 289
K P I D
Sbjct: 138 IKEGPPGIIQD 148
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 497 RGVLFYGPPGCGKTLLAKAIANECQAN--FISIKGPELLTMWFGESE 541
R VL GPPG GKT LA AIA E + F G E+ + ++E
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTE 124
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 19/163 (11%)
Query: 207 LPLRHPQIFKALGVKPP-KGILLHGP-PGTGKTLLARAIANETGCYFLCINGPEIMSKMA 264
LP + FK++ K I+LH P PGTGKT +A+A+ ++ + +NG +
Sbjct: 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFV 89
Query: 265 GESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRA 324
+N A + + +I IDE D + H L + M+ S
Sbjct: 90 RGPLTNFASAASFDGRQ--KVIVIDEFDRSGLAESQRH----------LRSFMEAYSSNC 137
Query: 325 HVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLR 367
+ +I A N I P R + I G P + ++E+++
Sbjct: 138 SI-IITANNIDGIIKPLQSRC----RVITFGQPTDEDKIEMMK 175
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 224 KGILLHGPPGTGKTLLARAIANETGCY--FLCINGPEIMSKMAGESE---SNLREAFNVA 278
+ +LL GPPGTGKT LA AIA E G F + G E+ S ++E N R A +
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLR 123
Query: 279 EKNAPSIIFIDEIDSIAP 296
K ++ E+ + P
Sbjct: 124 IKETKE-VYEGEVTELTP 140
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 497 RGVLFYGPPGCGKTLLAKAIANECQAN--FISIKGPELLTMWFGESE 541
R VL GPPG GKT LA AIA E + F + G E+ + ++E
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE 110
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 499 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 533
VL GPPG GKT LA IA+E Q N GP L+
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 30/178 (16%)
Query: 226 ILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSI 285
+LL GPPG GKT LA IA+E +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 286 IFIDEIDSIAPKREKTHGEVEKRIVSQL----LTLMDGMKSRAHVM--------VIGATN 333
+FIDEI + + VE+ + S + + +M G A + ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158
Query: 334 RPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKL-AEDVNLETVARETHG 390
R + LR E+D E+ E+++ M + ED E +A+ + G
Sbjct: 159 RSGLLSSPLRSRFGIILELDFYTVKELK--EIIKRAASLMDVEIEDAAAEMIAKRSRG 214
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 499 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 533
VL GPPG GKT LA IA+E Q N GP L+
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 30/178 (16%)
Query: 226 ILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSI 285
+LL GPPG GKT LA IA+E +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 286 IFIDEIDSIAPKREKTHGEVEKRIVSQL----LTLMDGMKSRAHVM--------VIGATN 333
+FIDEI + + VE+ + S + + +M G A + ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158
Query: 334 RPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKL-AEDVNLETVARETHG 390
R + LR E+D E+ E+++ M + ED E +A+ + G
Sbjct: 159 RSGLLSSPLRSRFGIILELDFYTVKELK--EIIKRAASLMDVEIEDAAAEMIAKRSRG 214
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 499 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 533
VL GPPG GKT LA IA+E Q N GP L+
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 226 ILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSI 285
+LL GPPG GKT LA IA+E +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 286 IFIDEI 291
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 499 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 533
VL GPPG GKT LA IA+E Q N GP L+
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 226 ILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSI 285
+LL GPPG GKT LA IA+E +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 286 IFIDEI 291
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 499 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 533
VL GPPG GKT LA IA+E Q N GP L+
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 30/178 (16%)
Query: 226 ILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSI 285
+LL GPPG GKT LA IA+E +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 286 IFIDEIDSIAPKREKTHGEVEKRIVSQL----LTLMDGMKSRAHVM--------VIGATN 333
+FIDEI + + VE+ + S + + +M G A + ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158
Query: 334 RPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKL-AEDVNLETVARETHG 390
R + LR + E+D E+ E+++ M + ED E +A+ + G
Sbjct: 159 RSGLLSSPLRSAFGIILELDFYTVKELK--EIIKRAASLMDVEIEDAAAEMIAKRSRG 214
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 15/74 (20%)
Query: 500 LFYGPPGCGKTLLAKAIANECQANFISIKGPELL-----------TMWFGESEANVRDVF 548
+ G PG GKT +A+ +A + N + PE+L T + GE E ++ V
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEV----PEILRDKRVMTLDMGTKYRGEFEDRLKKVM 260
Query: 549 DKARQSAPCVLFFD 562
D+ RQ+ +LF D
Sbjct: 261 DEIRQAGNIILFID 274
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 19/90 (21%)
Query: 213 QIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCING--PEIM---------- 260
++ + L + +L G PG GKT +A +A + IN PEI+
Sbjct: 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ------IINNEVPEILRDKRVMTLDM 244
Query: 261 -SKMAGESESNLREAFNVAEKNAPSIIFID 289
+K GE E L++ + + I+FID
Sbjct: 245 GTKYRGEFEDRLKKVMDEIRQAGNIILFID 274
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 495 PSRGVLFYGPPGCGKTLLAKAIA 517
P +F GP G GKT LA+A+A
Sbjct: 520 PIGSFIFLGPTGVGKTELARALA 542
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 15/74 (20%)
Query: 500 LFYGPPGCGKTLLAKAIANECQANFISIKGPELL-----------TMWFGESEANVRDVF 548
+ G PG GKT +A+ +A + N + PE+L T + GE E ++ V
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEV----PEILRDKRVMTLDMGTKYRGEFEDRLKKVM 260
Query: 549 DKARQSAPCVLFFD 562
D+ RQ+ +LF D
Sbjct: 261 DEIRQAGNIILFID 274
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 19/90 (21%)
Query: 213 QIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCING--PEIM---------- 260
++ + L + +L G PG GKT +A +A + IN PEI+
Sbjct: 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ------IINNEVPEILRDKRVMTLDM 244
Query: 261 -SKMAGESESNLREAFNVAEKNAPSIIFID 289
+K GE E L++ + + I+FID
Sbjct: 245 GTKYRGEFEDRLKKVMDEIRQAGNIILFID 274
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 499 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 533
VL GPPG G+T LA IA+E Q N GP L+
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLV 88
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 30/178 (16%)
Query: 226 ILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSI 285
+LL GPPG G+T LA IA+E +GP ++ + ++ E+ +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTSLERG--DV 105
Query: 286 IFIDEIDSIAPKREKTHGEVEKRIVSQL----LTLMDGMKSRAHVM--------VIGATN 333
+FIDEI + + VE+ + S + + +M G A + ++GAT
Sbjct: 106 LFIDEI-------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158
Query: 334 RPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKL-AEDVNLETVARETHG 390
R + LR E+D E+ E+++ M + ED E +A+ + G
Sbjct: 159 RSGLLSSPLRSRFGIILELDFYTVKELK--EIIKRAASLMDVEIEDAAAEMIAKRSRG 214
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 23/111 (20%)
Query: 443 ITSPSALREIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFY 502
I A R +A+ + N RW R +Q +Q P+ H ++P + +L
Sbjct: 18 IGQADAKRAVAIALRN-RW----------RRMQ--LQEPLRHE-------VTP-KNILMI 56
Query: 503 GPPGCGKTLLAKAIANECQANFISIKGPELLTMWF--GESEANVRDVFDKA 551
GP G GKT +A+ +A A FI ++ + + + E ++ +RD+ D A
Sbjct: 57 GPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 17/109 (15%)
Query: 208 PLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEI--MSKMAG 265
PLRH PK IL+ GP G GKT +AR +A F+ + + + +
Sbjct: 43 PLRHE--------VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94
Query: 266 ESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLL 314
E +S +R+ + A K + IA R + E+RI+ LL
Sbjct: 95 EVDSIIRDLTDSAMK-------LVRQQEIAKNRARAEDVAEERILDALL 136
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 17/90 (18%)
Query: 272 REAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQ-LLTLMD--------GMKS 322
++A + E+N I+FIDEID I K E + +V + V + LL L++ GM
Sbjct: 242 QKAIDAVEQNG--IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVK 299
Query: 323 RAHVMVIGA----TNRPNSIDPALRRSGRF 348
H++ I + RP+ + P L+ GR
Sbjct: 300 TDHILFIASGAFQVARPSDLIPELQ--GRL 327
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 20/83 (24%)
Query: 226 ILLHGPPGTGKTLLARAIANE-------------TGCYFLCINGPEIMSKMAGESESNLR 272
ILL GP G+GKTL+A+ +A T ++ + I++++ S+ N++
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 273 EAFNVAEKNAPSIIFIDEIDSIA 295
+A I+FIDEID I+
Sbjct: 135 KA-------QKGIVFIDEIDKIS 150
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 20/83 (24%)
Query: 499 VLFYGPPGCGKTLLAKAIANE-------------CQANFISIKGPELLTMWFGESEANVR 545
+L GP G GKTL+A+ +A +A ++ +LT S+ NV+
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 546 DVFDKARQSAPCVLFFDELDSIA 568
KA++ ++F DE+D I+
Sbjct: 135 ----KAQKG---IVFIDEIDKIS 150
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 60/148 (40%), Gaps = 26/148 (17%)
Query: 227 LLHGPPGTGKTLLARAIA------------NETGCYFLCINGPEIMSKMAGESESNLREA 274
LL G G GKT +A +A + Y L I +K G+ E +
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 275 FNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNR 334
E++ SI+FIDEI +I + G+V+ L+ + S + VIG+T
Sbjct: 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDA------ANLIKPLLSSGKIRVIGSTTY 324
Query: 335 PN-----SIDPALRRSGRFDKEIDIGVP 357
D AL R RF K IDI P
Sbjct: 325 QEFSNIFEKDRALAR--RFQK-IDITEP 349
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 37.0 bits (84), Expect = 0.043, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 358 DEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDL 417
D GR + RIH+K+ + + E ++R GA+L ++CTE IR + +
Sbjct: 2 DLEGRANIFRIHSKSXSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRARRK-VAT 60
Query: 418 EEDTIDA 424
E+D + A
Sbjct: 61 EKDFLKA 67
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Query: 226 ILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAP-- 283
++L GPPGTGKT LA IA + + I + +G E +REA A +N
Sbjct: 53 MILWGPPGTGKTTLAEVIAR-----YANADVERISAVTSGVKE--IREAIERARQNRNAG 105
Query: 284 --SIIFIDEI 291
+I+F+DE+
Sbjct: 106 RRTILFVDEV 115
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 499 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPC- 557
++ +GPPG GKT LA+ IA A+ I +T E +R+ ++ARQ+
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA---VTSGVKE----IREAIERARQNRNAG 105
Query: 558 ---VLFFDEL 564
+LF DE+
Sbjct: 106 RRTILFVDEV 115
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 224 KGILLHGPPGTGKTLLARAIANETG--CYFLCINGPEIMSKMAGESESNLREAFNVA--- 278
+ +L+ G PGTGKT +A +A G F I G EI S ++E+ L +AF +
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEA-LTQAFRRSIGV 129
Query: 279 --EKNAPSIIFIDEIDSIAPKRE 299
+ A + + EID I + +
Sbjct: 130 RIKAGAVHTVSLHEIDVINSRTQ 152
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 492 GMSPSRGVLFYGPPGCGKTLLAKAIANECQAN--FISIKGPELLTMWFGESEA 542
G R VL G PG GKT +A +A + F +I G E+ ++ ++EA
Sbjct: 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEA 118
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 226 ILLHGPPGTGKTLLARAIANETGCYFLCINGPEIM-SKMAGESESNLREA------FNVA 278
ILL GP G+GKTLLA +A F + + + GE N+ + ++V
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV- 112
Query: 279 EKNAPSIIFIDEIDSIAPKRE 299
+K I++ID+ID I+ K +
Sbjct: 113 QKAQRGIVYIDQIDKISRKSD 133
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 226 ILLHGPPGTGKTLLARAIANETGCYFLCINGPEIM-SKMAGESESNLREA------FNVA 278
ILL GP G+GKTLLA +A F + + + GE N+ + ++V
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDV- 112
Query: 279 EKNAPSIIFIDEIDSIAPKRE 299
+K I++ID+ID I+ K +
Sbjct: 113 QKAQRGIVYIDQIDKISRKSD 133
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 209 LRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY 250
++H +IF L + +GI+L GPPG+GKT++ + Y
Sbjct: 1035 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMIMNNALRNSSLY 1075
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 482 VEHPEMFEKFGMSPSRGVLFYGPPGCGKTLL 512
++H ++F ++ RG++ GPPG GKT++
Sbjct: 1035 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1064
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 23/111 (20%)
Query: 443 ITSPSALREIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFY 502
I A R +A+ + N RW + +LQE +++ V +P + +L
Sbjct: 18 IGQADAKRAVAIALRN-RWR--------RXQLQEPLRHEV-----------TP-KNILXI 56
Query: 503 GPPGCGKTLLAKAIANECQANFISIKGPELLTMWF--GESEANVRDVFDKA 551
GP G GKT +A+ +A A FI ++ + + + E ++ +RD+ D A
Sbjct: 57 GPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 17/115 (14%)
Query: 202 REVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEI-- 259
R ++ PLRH PK IL GP G GKT +AR +A F+ + +
Sbjct: 37 RXQLQEPLRHEVT--------PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88
Query: 260 MSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLL 314
+ + E +S +R+ + A K + IA R + E+RI+ LL
Sbjct: 89 VGYVGKEVDSIIRDLTDSAXK-------LVRQQEIAKNRARAEDVAEERILDALL 136
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 17/90 (18%)
Query: 272 REAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQ-LLTLMDGMKSRA------ 324
++A + E+N I+FIDEID I K E + +V + V + LL L++G
Sbjct: 242 QKAIDAVEQNG--IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGXVK 299
Query: 325 --HVMVIGA----TNRPNSIDPALRRSGRF 348
H++ I + RP+ + P L+ GR
Sbjct: 300 TDHILFIASGAFQVARPSDLIPELQ--GRL 327
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 209 LRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY 250
++H +IF L + +GI+L GPPG+GKT++ + Y
Sbjct: 1254 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMIMNNALRNSSLY 1294
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 482 VEHPEMFEKFGMSPSRGVLFYGPPGCGKTLL 512
++H ++F ++ RG++ GPPG GKT++
Sbjct: 1254 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1283
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 224 KGILLHGPPGTGKTLLARAIANETG--CYFLCINGPEIMSKMAGESES---NLREAFNVA 278
+ +L+ G PGTGKT +A A G F I G EI S ++E+ R + V
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQAFRRSIGVR 145
Query: 279 EKNAP----SIIFIDEIDSI 294
K P + + EID I
Sbjct: 146 IKEGPPGVVHTVSLHEIDVI 165
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 492 GMSPSRGVLFYGPPGCGKTLLAKAIANECQAN--FISIKGPELLTMWFGESEA 542
G R VL G PG GKT +A A + F +I G E+ ++ ++EA
Sbjct: 81 GKIAGRAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEA 133
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 18/87 (20%)
Query: 224 KGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSK---------------MAGESE 268
+ +L+GPPG GKT A +A E G L N ++ SK + G +
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFK 137
Query: 269 SNLREAFNVAEKNAPSIIFIDEIDSIA 295
N EA N+ K+ +I +DE+D ++
Sbjct: 138 HN-EEAQNLNGKHF--VIIMDEVDGMS 161
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 497 RGVLFYGPPGCGKTLLAKAIANE 519
R + YGPPG GKT A +A E
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQE 100
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 633 DEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIRE 685
D + IF + K +S+++DL+ SGADI ICQ + A+RE
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRE 54
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 370 TKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIRE 410
T M L+E+V+LE GAD+ ++C E M +RE
Sbjct: 14 TSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRE 54
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 497 RGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF--GESEANVRDVFDKA 551
+ +L GP G GKT +A+ +A A FI ++ + + + E ++ +RD+ D A
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 106
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 223 PKGILLHGPPGTGKTLLARAIANETGCYFLCING 256
PK IL+ GP G GKT +AR +A F+ +
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 82
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 497 RGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF--GESEANVRDVFDKA 551
+ +L GP G GKT +A+ +A A FI ++ + + + E ++ +RD+ D A
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 113
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 223 PKGILLHGPPGTGKTLLARAIANETGCYFLCING 256
PK IL+ GP G GKT +AR +A F+ +
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 89
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 497 RGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF--GESEANVRDVFDKA 551
+ +L GP G GKT +A+ +A A FI ++ + + + E ++ +RD+ D A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 107
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 223 PKGILLHGPPGTGKTLLARAIANETGCYFLCING 256
PK IL+ GP G GKT +AR +A F+ +
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 16/109 (14%)
Query: 466 GLDTVKRELQETVQYP-VEHPEMFEKFGM---SPSRGVLFYGPPGCGKTLLAKAIANEC- 520
GL VK ++ET VE +K G+ +P+ + F G PG GKT +A +A
Sbjct: 35 GLKPVKDRIRETAALLLVERAR--QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLH 92
Query: 521 ------QANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDE 563
+ + +S+ +L+ + G + ++V +A VLF DE
Sbjct: 93 RLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDE 138
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 226 ILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSI 285
IL GP G GKT LA I+ E P I + +G+ + L N++E + I
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXSANIKTTAAPXI--EKSGDLAAILT---NLSEGD---I 109
Query: 286 IFIDEIDSIAPKREK 300
+FIDEI ++P E+
Sbjct: 110 LFIDEIHRLSPAIEE 124
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 499 VLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 532
+LF GP G GKT LA I+ E AN + P +
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXSANIKTTAAPXI 91
>pdb|2W58|A Chain A, Crystal Structure Of The Dnai
pdb|2W58|B Chain B, Crystal Structure Of The Dnai
Length = 202
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 221 KPPKGILLHGPPGTGKTLLARAIANETG---CYFLCINGPEIMSKM 263
K KG+ LHG G GKT L AIANE L + PE+ ++
Sbjct: 52 KKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFREL 97
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 16/109 (14%)
Query: 466 GLDTVKRELQETVQYP-VEHPEMFEKFGM---SPSRGVLFYGPPGCGKTLLAKAIANEC- 520
GL VK ++ET VE +K G+ +P+ + F G PG GKT +A +A
Sbjct: 28 GLKPVKDRIRETAALLLVERAR--QKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLH 85
Query: 521 ------QANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDE 563
+ + +S+ +L+ + G + ++V +A VLF DE
Sbjct: 86 RLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDE 131
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 228 LHGPPGTGKTLLARAIANETGCYFLCIN 255
L GPPG GKT LA++IA G F+ I+
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRIS 140
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 503 GPPGCGKTLLAKAIANECQANFISI 527
GPPG GKT LAK+IA F+ I
Sbjct: 115 GPPGVGKTSLAKSIAKSLGRKFVRI 139
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 500 LFYGPPGCGKTLLAKAIANECQANFI--SIKGPELLTM----------WFGESEANVRDV 547
+ G PG GKT + + +A + +KG +L + + GE E ++ V
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 548 F-DKARQSAPCVLFFDELDSI 567
D A+Q +LF DEL ++
Sbjct: 107 LNDLAKQEGNVILFIDELHTM 127
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 466 GLDTVKRELQETVQYP-VEHPEMFEKFGM---SPSRGVLFYGPPGCGKTLLAKAIANEC- 520
GL VK ++ET VE +K G+ +P+ F G PG GKT +A A
Sbjct: 35 GLKPVKDRIRETAALLLVERAR--QKLGLAHETPTLHXSFTGNPGTGKTTVALKXAGLLH 92
Query: 521 ------QANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDE 563
+ + +S+ +L+ + G + ++V +A VLF DE
Sbjct: 93 RLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---XGGVLFIDE 138
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 219 GVKPPKGI--LLHGPPGTGKTLLARAIANE 246
++ PKGI L+ G PGTGKT +A IA E
Sbjct: 4 SMEQPKGINILITGTPGTGKTSMAEMIAAE 33
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 21/101 (20%)
Query: 479 QYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANE-----CQANFISIKGPELL 533
++ V+ + + K G P +LF GPPG GKT A A+A E + NF+ + +
Sbjct: 31 EHIVKRLKHYVKTGSMPH--LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD-- 86
Query: 534 TMWFGESEANV-RDVFDKARQSAPC------VLFFDELDSI 567
E NV R+ + ++ P ++F DE D++
Sbjct: 87 -----ERGINVIREKVKEFARTKPIGGASFKIIFLDEADAL 122
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 34/162 (20%)
Query: 200 QIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANE--TGCYFLCINGP 257
+IR V+++ LR + +L G PG GKT + +A G + G
Sbjct: 178 EIRRVIQILLRRTK----------NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGK 227
Query: 258 EIMS----------KMAGESESNLREAFN-VAEKNAPSIIFIDEIDSIAPKREKTHGEVE 306
I+S K GE E L+ V + I+FIDE+ ++ K G V+
Sbjct: 228 RIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGA-GKAEGAVD 286
Query: 307 KRIVSQLLTLMDGMKSRAHVMVIGATN----RPNSIDPALRR 344
++ +R + +IGAT R DPAL R
Sbjct: 287 AG------NMLKPALARGELRLIGATTLDEYREIEKDPALER 322
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 219 GVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCING 256
V+ P LL G PG+GKT L AI ET + I+
Sbjct: 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 499 VLFYGPPGCGKTLLAKAIANE 519
+LFYGPPG GKT A+A E
Sbjct: 49 LLFYGPPGTGKTSTIVALARE 69
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 34/162 (20%)
Query: 200 QIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANE--TGCYFLCINGP 257
+IR V+++ LR + +L G PG GKT + +A G + G
Sbjct: 41 EIRRVIQILLR----------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGK 90
Query: 258 EIMS----------KMAGESESNLREAFN-VAEKNAPSIIFIDEIDSIAPKREKTHGEVE 306
I+S K GE E L+ V + I+FIDE+ ++ K G V+
Sbjct: 91 RIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAG-KAEGAVD 149
Query: 307 KRIVSQLLTLMDGMKSRAHVMVIGATN----RPNSIDPALRR 344
++ +R + +IGAT R DPAL R
Sbjct: 150 AG------NMLKPALARGELRLIGATTLDEYREIEKDPALER 185
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Query: 499 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 533
+LFYGPPG GKT A+ E + GP+L+
Sbjct: 61 MLFYGPPGTGKTSTILALTKE-------LYGPDLM 88
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Query: 226 ILLHGPPGTGKTLLARAIANETGCYFLCINGPEIM 260
+L +GPPGTGKT A+ E + GP++M
Sbjct: 61 MLFYGPPGTGKTSTILALTKE-------LYGPDLM 88
>pdb|3VKW|A Chain A, Crystal Structure Of The Superfamily 1 Helicase From
Tomato Mosaic Virus
Length = 446
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 12/61 (19%)
Query: 450 REIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGK 509
R +AV +V ++D+ L T++R L++ + +S ++ VL G PGCGK
Sbjct: 127 RRVAVSSESVVYSDMAKLRTLRRLLKDGEPH------------VSSAKVVLVDGVPGCGK 174
Query: 510 T 510
T
Sbjct: 175 T 175
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 221 KPPKGILLHGPPGTGKTLLARAIANETGCYFL---CINGPEIMSKM 263
+P + +++ G G+GKT +A +A+ETG F + PE ++ M
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATM 72
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 225 GILLHGPPGTGKTLLARAIANETGCYFLCI 254
ILL G PG GKT L + +A+++G ++ +
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 226 ILLHGPPGTGKTLLARAIANETGCYFLCI 254
ILL G PG GKT L + +A+++G ++ +
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 226 ILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNL---REAFNVAEKNA 282
+L GPPGTGKT A A+A + N + +M E + R + A
Sbjct: 41 LLFSGPPGTGKTATAIALARD----LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96
Query: 283 P------SIIFIDEIDSI 294
P IIF+DE D++
Sbjct: 97 PIGGAPFKIIFLDEADAL 114
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 226 ILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNL---REAFNVAEKNA 282
+L GPPGTGKT A A+A + N + +M E + R + A
Sbjct: 41 LLFSGPPGTGKTATAIALARD----LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96
Query: 283 P------SIIFIDEIDSI 294
P IIF+DE D++
Sbjct: 97 PIGGAPFKIIFLDEADAL 114
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 23/158 (14%)
Query: 213 QIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGES----E 268
K +K P + + G G GK+ + + G + ++ E+ S AGE
Sbjct: 26 NFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIR 85
Query: 269 SNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLL--TLMD-------- 318
REA + K +FI+++D+ A + G + + +Q++ TLM+
Sbjct: 86 QRYREAAEIIRKGNMCCLFINDLDAGA---GRMGGTTQYTVNNQMVNATLMNIADNPTNV 142
Query: 319 ---GMKSR---AHVMVIGATNRPNSIDPALRRSGRFDK 350
GM ++ A V +I N +++ L R GR +K
Sbjct: 143 QLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEK 180
>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
Length = 800
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 209 LRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAI 243
L H Q++ V L+ GPPGTGKT+ + I
Sbjct: 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATI 391
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 27/138 (19%)
Query: 226 ILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKN--AP 283
++ GPPG GK A+ +A E G F+ I+ +I+ + + ++A E+ P
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDILREAVQKGTPLGKKAKEYMERGELVP 60
Query: 284 SIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALR 343
+ I I+ + PK HG V + DG + ++D L
Sbjct: 61 DDLIIALIEEVFPK----HGNV----------IFDGFPR--------TVKQAEALDEMLE 98
Query: 344 RSG-RFDKEIDIGVPDEV 360
+ G + D + VPDEV
Sbjct: 99 KKGLKVDHVLLFEVPDEV 116
>pdb|2XZO|A Chain A, Upf1 Helicase - Rna Complex
pdb|2XZP|A Chain A, Upf1 Helicase
Length = 623
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 209 LRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAI 243
L H Q++ V L+ GPPGTGKT+ + I
Sbjct: 180 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATI 214
>pdb|2GJK|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|B Chain B, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK7|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
Length = 624
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 209 LRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAI 243
L H Q++ V L+ GPPGTGKT+ + I
Sbjct: 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATI 215
>pdb|1A76|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii
pdb|1A77|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii
Length = 326
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 686 EIEKDIKKGQRENPEGAAGEVAE-IKKEHFEESMKYARR 723
++++ +K +RE E A ++ E IKKE FEE+ KYA+R
Sbjct: 85 KLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKR 123
>pdb|2G5X|A Chain A, Crystal Structure Of Lychnin A Type 1 Ribosome
Inactivating Protein (Rip)
Length = 234
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 727 DSDVRKYQAFANTLQQSRGFGSSAAANNVIPVSSFANGDGY 767
DSD KY +F ++L++ G G+ N IPV+ AN D +
Sbjct: 7 DSDSAKYSSFLDSLREEFGRGTPKVCN--IPVTKKANNDKF 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,267,963
Number of Sequences: 62578
Number of extensions: 935801
Number of successful extensions: 3336
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 2989
Number of HSP's gapped (non-prelim): 231
length of query: 772
length of database: 14,973,337
effective HSP length: 106
effective length of query: 666
effective length of database: 8,340,069
effective search space: 5554485954
effective search space used: 5554485954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)