Query 044198
Match_columns 772
No_of_seqs 671 out of 4693
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 12:23:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0730 AAA+-type ATPase [Post 100.0 2E-119 5E-124 977.6 50.5 680 6-739 12-692 (693)
2 KOG0733 Nuclear AAA ATPase (VC 100.0 1E-115 3E-120 931.6 48.7 553 184-742 185-790 (802)
3 TIGR01243 CDC48 AAA family ATP 100.0 3E-101 7E-106 913.1 73.4 722 11-742 3-731 (733)
4 KOG0736 Peroxisome assembly fa 100.0 1.4E-87 3E-92 733.6 52.2 614 115-741 304-952 (953)
5 KOG0735 AAA+-type ATPase [Post 100.0 2.5E-74 5.4E-79 623.6 56.7 497 223-744 431-939 (952)
6 COG0464 SpoVK ATPases of the A 100.0 5.7E-68 1.2E-72 605.1 43.7 489 207-736 2-492 (494)
7 KOG0741 AAA+-type ATPase [Post 100.0 5.8E-61 1.3E-65 504.6 41.4 602 11-642 10-683 (744)
8 COG1222 RPT1 ATP-dependent 26S 100.0 1.8E-60 3.9E-65 484.4 23.7 252 453-723 142-394 (406)
9 KOG0738 AAA+-type ATPase [Post 100.0 1.5E-56 3.2E-61 457.5 22.3 287 450-742 200-490 (491)
10 COG1222 RPT1 ATP-dependent 26S 100.0 1.5E-52 3.2E-57 426.7 26.0 248 181-445 143-393 (406)
11 KOG0739 AAA+-type ATPase [Post 100.0 7E-51 1.5E-55 401.7 17.3 289 451-744 122-439 (439)
12 KOG0727 26S proteasome regulat 100.0 9.2E-50 2E-54 385.3 20.0 248 455-721 148-396 (408)
13 KOG0728 26S proteasome regulat 100.0 1.5E-48 3.2E-53 376.5 20.7 260 453-731 138-398 (404)
14 CHL00195 ycf46 Ycf46; Provisio 100.0 1.6E-46 3.5E-51 417.6 40.0 398 282-739 81-483 (489)
15 KOG0734 AAA+-type ATPase conta 100.0 3.6E-48 7.9E-53 408.5 17.8 244 456-721 298-541 (752)
16 KOG0733 Nuclear AAA ATPase (VC 100.0 4.1E-47 8.8E-52 406.7 23.2 272 177-449 499-774 (802)
17 KOG0726 26S proteasome regulat 100.0 7.3E-48 1.6E-52 379.2 16.1 249 454-721 177-426 (440)
18 KOG0730 AAA+-type ATPase [Post 100.0 5.8E-47 1.3E-51 412.5 22.9 252 182-448 427-678 (693)
19 KOG0729 26S proteasome regulat 100.0 1.3E-46 2.8E-51 366.0 17.5 251 452-721 167-418 (435)
20 KOG0652 26S proteasome regulat 100.0 1.3E-46 2.8E-51 365.0 17.0 251 454-723 163-414 (424)
21 KOG0737 AAA+-type ATPase [Post 100.0 3E-44 6.5E-49 368.6 19.7 280 457-741 87-381 (386)
22 KOG0731 AAA+-type ATPase conta 100.0 3.2E-44 7E-49 403.5 21.3 247 455-721 304-553 (774)
23 PTZ00454 26S protease regulato 100.0 1.5E-43 3.1E-48 386.5 22.2 252 454-724 137-389 (398)
24 KOG0736 Peroxisome assembly fa 100.0 1.9E-43 4.1E-48 387.6 22.8 269 181-450 664-938 (953)
25 COG1223 Predicted ATPase (AAA+ 100.0 9E-44 1.9E-48 345.6 17.2 245 454-724 113-358 (368)
26 KOG0741 AAA+-type ATPase [Post 100.0 7.6E-43 1.7E-47 368.0 15.9 278 454-735 211-506 (744)
27 PRK03992 proteasome-activating 100.0 1E-41 2.3E-46 374.5 22.4 257 453-728 122-379 (389)
28 COG0465 HflB ATP-dependent Zn 100.0 3.2E-42 7E-47 382.1 18.3 246 456-721 144-390 (596)
29 KOG0652 26S proteasome regulat 100.0 3.5E-41 7.7E-46 327.2 21.6 273 155-444 131-412 (424)
30 KOG0727 26S proteasome regulat 100.0 3.1E-41 6.8E-46 326.2 21.0 246 182-444 148-396 (408)
31 KOG0728 26S proteasome regulat 100.0 3.4E-41 7.4E-46 325.5 19.8 247 181-444 139-388 (404)
32 KOG0740 AAA+-type ATPase [Post 100.0 1.3E-41 2.8E-46 362.8 17.0 282 450-743 141-426 (428)
33 PTZ00361 26 proteosome regulat 100.0 3.7E-41 8E-46 369.2 20.6 249 454-721 175-424 (438)
34 KOG0726 26S proteasome regulat 100.0 2.6E-41 5.6E-46 333.0 15.2 247 181-444 177-426 (440)
35 KOG0734 AAA+-type ATPase conta 100.0 1.3E-40 2.8E-45 351.5 19.7 244 183-444 298-541 (752)
36 KOG0738 AAA+-type ATPase [Post 100.0 1.1E-39 2.4E-44 333.8 21.5 263 183-449 206-474 (491)
37 COG1223 Predicted ATPase (AAA+ 100.0 4.8E-39 1E-43 312.7 23.7 304 114-445 50-356 (368)
38 KOG0651 26S proteasome regulat 100.0 3.2E-40 6.9E-45 329.0 12.8 246 457-721 127-373 (388)
39 KOG0729 26S proteasome regulat 100.0 1.5E-39 3.3E-44 316.7 17.3 245 182-444 170-418 (435)
40 KOG0732 AAA+-type ATPase conta 100.0 4.9E-39 1.1E-43 370.1 22.8 477 184-678 260-778 (1080)
41 TIGR01241 FtsH_fam ATP-depende 100.0 9.9E-39 2.1E-43 363.2 22.4 250 453-722 46-296 (495)
42 TIGR03689 pup_AAA proteasome A 100.0 1.5E-38 3.3E-43 352.6 22.9 251 454-720 174-477 (512)
43 KOG0735 AAA+-type ATPase [Post 100.0 4.4E-38 9.6E-43 342.1 22.1 229 184-412 662-890 (952)
44 TIGR01242 26Sp45 26S proteasom 100.0 5.9E-38 1.3E-42 343.9 22.2 249 454-721 114-363 (364)
45 CHL00176 ftsH cell division pr 100.0 4.7E-37 1E-41 352.2 22.0 246 456-721 177-423 (638)
46 PTZ00454 26S protease regulato 100.0 2.3E-36 5E-41 330.0 25.0 247 182-445 138-387 (398)
47 KOG0731 AAA+-type ATPase conta 100.0 3.2E-36 6.9E-41 339.1 21.6 242 184-443 306-552 (774)
48 KOG0732 AAA+-type ATPase conta 100.0 1.7E-36 3.8E-41 349.1 16.4 267 456-727 259-531 (1080)
49 KOG0737 AAA+-type ATPase [Post 100.0 5.3E-36 1.2E-40 307.9 18.2 227 185-413 88-317 (386)
50 PTZ00361 26 proteosome regulat 100.0 4.2E-35 9.2E-40 321.5 25.1 246 182-444 176-424 (438)
51 KOG0739 AAA+-type ATPase [Post 100.0 5.6E-36 1.2E-40 296.3 15.7 227 183-412 127-355 (439)
52 PRK10733 hflB ATP-dependent me 100.0 2.1E-35 4.5E-40 343.1 22.2 247 457-723 147-394 (644)
53 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.2E-35 2.7E-40 354.3 19.9 213 482-721 1616-1877(2281)
54 PRK03992 proteasome-activating 100.0 8.5E-35 1.8E-39 319.8 24.2 251 182-449 124-377 (389)
55 TIGR01243 CDC48 AAA family ATP 100.0 7.5E-35 1.6E-39 346.1 25.4 267 184-450 448-716 (733)
56 TIGR02639 ClpA ATP-dependent C 100.0 1.9E-33 4.2E-38 332.8 34.5 444 185-687 178-716 (731)
57 PRK11034 clpA ATP-dependent Cl 100.0 1.8E-33 3.9E-38 327.8 33.6 444 186-687 183-720 (758)
58 COG0464 SpoVK ATPases of the A 100.0 1.9E-34 4E-39 329.4 24.4 250 183-448 236-487 (494)
59 PLN00020 ribulose bisphosphate 100.0 3.4E-34 7.4E-39 297.8 22.9 191 491-686 143-355 (413)
60 COG0465 HflB ATP-dependent Zn 100.0 2.9E-34 6.2E-39 318.8 19.9 243 184-444 145-390 (596)
61 KOG0651 26S proteasome regulat 100.0 1E-33 2.2E-38 282.6 13.5 229 182-410 125-356 (388)
62 CHL00195 ycf46 Ycf46; Provisio 100.0 2.6E-32 5.6E-37 304.0 24.9 243 184-449 223-468 (489)
63 TIGR01242 26Sp45 26S proteasom 100.0 9.9E-32 2.1E-36 294.7 26.8 246 182-444 115-363 (364)
64 TIGR01241 FtsH_fam ATP-depende 100.0 7.3E-32 1.6E-36 306.9 22.9 245 183-445 49-296 (495)
65 TIGR03689 pup_AAA proteasome A 100.0 3.2E-31 7E-36 294.3 22.0 221 182-408 175-411 (512)
66 CHL00176 ftsH cell division pr 100.0 9.1E-31 2E-35 300.5 22.0 243 184-444 178-423 (638)
67 CHL00095 clpC Clp protease ATP 100.0 5.5E-29 1.2E-33 298.1 33.1 455 186-687 176-786 (821)
68 TIGR03345 VI_ClpV1 type VI sec 100.0 1.2E-28 2.6E-33 293.3 34.7 455 184-687 182-835 (852)
69 PRK10865 protein disaggregatio 100.0 5.8E-28 1.2E-32 288.5 35.2 457 185-687 174-833 (857)
70 TIGR03346 chaperone_ClpB ATP-d 100.0 8.6E-28 1.9E-32 288.5 36.1 458 185-688 169-831 (852)
71 COG0542 clpA ATP-binding subun 100.0 7.7E-28 1.7E-32 273.9 32.1 457 185-687 166-759 (786)
72 PRK10733 hflB ATP-dependent me 100.0 5.4E-29 1.2E-33 289.6 23.3 244 185-446 148-394 (644)
73 CHL00206 ycf2 Ycf2; Provisiona 100.0 2.3E-29 5E-34 301.1 20.0 200 207-412 1614-1862(2281)
74 KOG0740 AAA+-type ATPase [Post 100.0 2.1E-29 4.6E-34 269.3 17.7 261 182-449 146-409 (428)
75 PLN00020 ribulose bisphosphate 100.0 7.7E-29 1.7E-33 257.9 19.6 190 216-408 141-352 (413)
76 CHL00181 cbbX CbbX; Provisiona 99.9 1.6E-22 3.5E-27 212.8 17.6 216 461-688 22-260 (287)
77 KOG0744 AAA+-type ATPase [Post 99.9 2.7E-23 5.9E-28 209.1 10.2 234 460-720 140-413 (423)
78 KOG0743 AAA+-type ATPase [Post 99.9 1.7E-22 3.8E-27 214.3 16.6 223 455-688 195-429 (457)
79 KOG0742 AAA+-type ATPase [Post 99.9 1.5E-21 3.3E-26 201.4 16.5 211 461-682 354-592 (630)
80 TIGR02880 cbbX_cfxQ probable R 99.9 9.6E-22 2.1E-26 207.2 14.4 213 463-687 23-258 (284)
81 TIGR02881 spore_V_K stage V sp 99.9 4.8E-21 1E-25 200.5 17.6 214 461-687 5-243 (261)
82 PF00004 AAA: ATPase family as 99.9 1.1E-21 2.4E-26 183.2 10.8 130 499-631 1-132 (132)
83 COG0466 Lon ATP-dependent Lon 99.8 9E-21 1.9E-25 210.0 15.4 261 462-771 323-613 (782)
84 PF00004 AAA: ATPase family as 99.8 1.4E-19 3E-24 168.9 15.1 130 226-356 1-132 (132)
85 TIGR00763 lon ATP-dependent pr 99.8 7.7E-20 1.7E-24 218.2 15.3 262 462-771 320-615 (775)
86 CHL00181 cbbX CbbX; Provisiona 99.8 4.3E-18 9.3E-23 179.3 19.7 213 188-411 22-258 (287)
87 TIGR02880 cbbX_cfxQ probable R 99.8 7.6E-18 1.7E-22 177.6 19.7 210 190-410 23-256 (284)
88 PF05496 RuvB_N: Holliday junc 99.8 2.4E-18 5.1E-23 169.2 13.7 189 458-678 20-225 (233)
89 TIGR02881 spore_V_K stage V sp 99.8 1.3E-17 2.7E-22 174.7 19.3 175 188-373 5-194 (261)
90 TIGR02639 ClpA ATP-dependent C 99.7 2.4E-17 5.2E-22 195.9 17.8 245 459-742 179-454 (731)
91 TIGR00635 ruvB Holliday juncti 99.7 5.5E-17 1.2E-21 174.3 19.0 248 460-760 2-269 (305)
92 KOG0743 AAA+-type ATPase [Post 99.7 2.8E-17 6.1E-22 174.8 15.9 203 186-398 198-411 (457)
93 PRK00080 ruvB Holliday junctio 99.7 1.2E-16 2.6E-21 173.1 20.8 246 459-757 22-287 (328)
94 PRK10787 DNA-binding ATP-depen 99.7 4.1E-17 9E-22 192.7 17.5 256 462-771 322-611 (784)
95 COG2256 MGS1 ATPase related to 99.7 4.2E-17 9.1E-22 170.5 15.2 228 458-747 20-264 (436)
96 KOG0742 AAA+-type ATPase [Post 99.7 5.3E-17 1.2E-21 168.1 14.6 177 221-402 382-587 (630)
97 PF05496 RuvB_N: Holliday junc 99.7 4.7E-16 1E-20 153.0 17.7 182 182-392 17-215 (233)
98 KOG0744 AAA+-type ATPase [Post 99.7 5.9E-17 1.3E-21 163.7 10.1 148 222-371 176-341 (423)
99 COG2255 RuvB Holliday junction 99.7 5.5E-16 1.2E-20 154.9 16.7 232 458-740 22-273 (332)
100 PRK11034 clpA ATP-dependent Cl 99.7 4.5E-16 9.7E-21 182.5 18.1 242 460-740 184-456 (758)
101 KOG2004 Mitochondrial ATP-depe 99.7 2.3E-16 5.1E-21 173.9 14.6 164 462-645 411-596 (906)
102 KOG1051 Chaperone HSP104 and r 99.7 1.3E-14 2.8E-19 168.5 25.9 159 189-370 186-363 (898)
103 TIGR02902 spore_lonB ATP-depen 99.7 6.3E-16 1.4E-20 176.6 14.4 211 457-720 60-331 (531)
104 TIGR00390 hslU ATP-dependent p 99.6 1.3E-15 2.7E-20 163.5 13.0 177 462-641 12-342 (441)
105 TIGR00362 DnaA chromosomal rep 99.6 1.3E-15 2.8E-20 169.9 12.5 246 496-758 136-402 (405)
106 PRK05342 clpX ATP-dependent pr 99.6 5.8E-15 1.2E-19 162.3 17.3 223 463-687 72-383 (412)
107 PRK05201 hslU ATP-dependent pr 99.6 1.4E-15 3E-20 163.2 11.4 177 463-642 16-345 (443)
108 PRK12323 DNA polymerase III su 99.6 7.3E-15 1.6E-19 165.1 16.9 186 457-679 11-230 (700)
109 PRK14962 DNA polymerase III su 99.6 1E-14 2.2E-19 163.4 17.7 183 457-676 9-220 (472)
110 PRK07003 DNA polymerase III su 99.6 1.3E-14 2.8E-19 165.0 18.3 185 458-679 12-225 (830)
111 COG2255 RuvB Holliday junction 99.6 8.9E-15 1.9E-19 146.3 14.9 182 182-392 19-217 (332)
112 PRK00149 dnaA chromosomal repl 99.6 2.2E-15 4.8E-20 170.0 12.1 247 496-758 148-414 (450)
113 TIGR00763 lon ATP-dependent pr 99.6 1.3E-14 2.8E-19 173.5 17.9 163 190-370 321-505 (775)
114 PRK13342 recombination factor 99.6 2.7E-14 5.9E-19 159.3 18.9 180 459-679 9-201 (413)
115 PRK00080 ruvB Holliday junctio 99.6 3.2E-14 7E-19 154.1 18.1 191 182-402 18-225 (328)
116 PRK14956 DNA polymerase III su 99.6 1.5E-14 3.2E-19 159.2 15.5 184 458-678 14-226 (484)
117 TIGR00382 clpX endopeptidase C 99.6 2.6E-14 5.7E-19 156.1 16.3 224 462-687 77-389 (413)
118 PRK10865 protein disaggregatio 99.6 1E-14 2.2E-19 175.2 13.9 166 459-649 175-358 (857)
119 TIGR00635 ruvB Holliday juncti 99.6 4.9E-14 1.1E-18 151.4 17.7 187 187-403 2-205 (305)
120 PRK07940 DNA polymerase III su 99.6 2.4E-14 5.1E-19 156.7 15.3 192 460-676 3-216 (394)
121 TIGR03345 VI_ClpV1 type VI sec 99.6 1.2E-14 2.7E-19 173.8 14.0 184 458-666 183-389 (852)
122 PRK14960 DNA polymerase III su 99.6 7.7E-14 1.7E-18 157.3 18.9 185 458-679 11-224 (702)
123 PRK14949 DNA polymerase III su 99.6 1.2E-13 2.6E-18 160.1 20.0 185 458-679 12-225 (944)
124 COG2256 MGS1 ATPase related to 99.6 6.4E-14 1.4E-18 146.9 15.5 149 182-368 17-174 (436)
125 PRK14961 DNA polymerase III su 99.5 9.2E-14 2E-18 152.3 17.1 185 458-679 12-225 (363)
126 PRK07994 DNA polymerase III su 99.5 1.9E-13 4.2E-18 156.5 20.3 185 458-679 12-225 (647)
127 KOG0989 Replication factor C, 99.5 3.1E-13 6.7E-18 136.8 18.9 184 455-676 29-229 (346)
128 PRK06645 DNA polymerase III su 99.5 8.1E-14 1.8E-18 156.6 16.1 190 456-682 15-237 (507)
129 CHL00095 clpC Clp protease ATP 99.5 3.7E-14 7.9E-19 170.7 13.7 186 458-668 175-382 (821)
130 TIGR03346 chaperone_ClpB ATP-d 99.5 4.8E-14 1E-18 170.1 14.6 184 458-666 169-375 (852)
131 PRK14088 dnaA chromosomal repl 99.5 5.4E-14 1.2E-18 157.2 13.9 173 496-683 130-314 (440)
132 PRK13341 recombination factor 99.5 8.4E-14 1.8E-18 162.8 15.6 181 458-679 24-222 (725)
133 TIGR02928 orc1/cdc6 family rep 99.5 1.6E-13 3.5E-18 151.4 16.9 202 462-685 15-257 (365)
134 PRK12422 chromosomal replicati 99.5 1.3E-13 2.9E-18 153.6 15.9 169 496-679 141-318 (445)
135 PLN03025 replication factor C 99.5 2E-13 4.2E-18 147.3 16.5 181 458-679 9-202 (319)
136 PRK14086 dnaA chromosomal repl 99.5 1.2E-13 2.6E-18 156.0 15.1 172 497-683 315-497 (617)
137 PRK04195 replication factor C 99.5 1.7E-13 3.7E-18 155.8 16.3 190 457-681 9-206 (482)
138 TIGR02903 spore_lon_C ATP-depe 99.5 1.2E-12 2.6E-17 152.0 23.1 223 457-721 149-430 (615)
139 PRK14958 DNA polymerase III su 99.5 2.1E-13 4.5E-18 154.5 16.3 185 458-679 12-225 (509)
140 PRK08691 DNA polymerase III su 99.5 3.7E-13 8.1E-18 153.3 17.9 187 457-680 11-226 (709)
141 PRK14964 DNA polymerase III su 99.5 5.3E-13 1.2E-17 148.8 18.7 186 458-680 9-223 (491)
142 PRK05563 DNA polymerase III su 99.5 4.6E-13 9.9E-18 153.7 18.4 186 458-680 12-226 (559)
143 PRK00411 cdc6 cell division co 99.5 3.8E-13 8.2E-18 150.0 17.3 220 462-721 30-282 (394)
144 PRK14963 DNA polymerase III su 99.5 4.2E-13 9.1E-18 151.6 16.7 185 457-678 9-221 (504)
145 KOG2028 ATPase related to the 99.5 6.5E-13 1.4E-17 136.4 15.7 209 496-747 162-394 (554)
146 PRK12402 replication factor C 99.5 6.3E-13 1.4E-17 145.0 17.0 187 458-679 11-228 (337)
147 KOG2004 Mitochondrial ATP-depe 99.5 2.6E-13 5.7E-18 150.2 13.5 164 189-370 411-596 (906)
148 PRK06893 DNA replication initi 99.5 3.1E-13 6.7E-18 138.5 13.3 160 497-678 40-207 (229)
149 PRK14959 DNA polymerase III su 99.5 5.9E-13 1.3E-17 151.2 16.2 183 457-676 11-222 (624)
150 TIGR02397 dnaX_nterm DNA polym 99.5 2.8E-12 6E-17 141.0 20.1 187 457-680 9-224 (355)
151 PRK14087 dnaA chromosomal repl 99.5 2.6E-13 5.6E-18 151.9 11.8 246 496-758 141-413 (450)
152 PRK05896 DNA polymerase III su 99.5 2.7E-12 5.8E-17 145.2 19.8 184 458-678 12-224 (605)
153 PRK14951 DNA polymerase III su 99.5 9.7E-13 2.1E-17 150.6 16.5 185 458-679 12-230 (618)
154 PTZ00112 origin recognition co 99.5 1.3E-12 2.9E-17 149.0 17.2 196 462-680 755-987 (1164)
155 COG0466 Lon ATP-dependent Lon 99.4 4E-13 8.7E-18 149.8 12.5 164 189-370 323-508 (782)
156 PRK06305 DNA polymerase III su 99.4 2.2E-12 4.7E-17 144.6 18.0 183 458-677 13-225 (451)
157 PRK08084 DNA replication initi 99.4 1.6E-12 3.5E-17 133.7 15.5 179 497-719 46-234 (235)
158 PRK14957 DNA polymerase III su 99.4 3.7E-12 8E-17 144.1 19.7 185 458-679 12-225 (546)
159 COG0593 DnaA ATPase involved i 99.4 4.7E-13 1E-17 144.4 11.3 246 495-757 112-376 (408)
160 PRK14969 DNA polymerase III su 99.4 3.4E-12 7.4E-17 145.5 18.8 186 458-680 12-226 (527)
161 PF05673 DUF815: Protein of un 99.4 4.9E-12 1.1E-16 126.6 17.4 191 456-676 21-243 (249)
162 PRK14952 DNA polymerase III su 99.4 4.3E-12 9.3E-17 144.9 19.3 185 458-679 9-224 (584)
163 PRK07764 DNA polymerase III su 99.4 4.1E-12 8.8E-17 150.4 19.8 185 458-679 11-226 (824)
164 PRK07133 DNA polymerase III su 99.4 5.6E-12 1.2E-16 145.3 20.2 191 457-679 13-224 (725)
165 TIGR03420 DnaA_homol_Hda DnaA 99.4 1.7E-12 3.8E-17 133.1 14.0 166 495-684 37-211 (226)
166 PRK14965 DNA polymerase III su 99.4 3.9E-12 8.5E-17 146.8 18.4 184 458-678 12-224 (576)
167 PRK08903 DnaA regulatory inact 99.4 2.9E-12 6.2E-17 131.5 15.5 176 494-719 40-224 (227)
168 TIGR02640 gas_vesic_GvpN gas v 99.4 1.8E-12 3.9E-17 135.6 13.6 132 496-645 21-198 (262)
169 PRK06647 DNA polymerase III su 99.4 5.9E-12 1.3E-16 144.0 18.7 186 457-679 11-225 (563)
170 TIGR02928 orc1/cdc6 family rep 99.4 1.1E-11 2.3E-16 136.9 20.1 167 186-371 12-213 (365)
171 PF02359 CDC48_N: Cell divisio 99.4 1.5E-12 3.3E-17 111.6 10.2 81 11-93 1-86 (87)
172 PRK14970 DNA polymerase III su 99.4 1.7E-11 3.6E-16 135.2 20.6 192 457-679 12-214 (367)
173 PRK00411 cdc6 cell division co 99.4 2.1E-11 4.6E-16 136.0 21.5 222 187-444 28-282 (394)
174 PF05673 DUF815: Protein of un 99.4 1.1E-11 2.3E-16 124.2 16.8 191 182-400 20-242 (249)
175 PHA02544 44 clamp loader, smal 99.4 3.9E-12 8.5E-17 137.4 14.7 157 457-645 16-173 (316)
176 PRK14953 DNA polymerase III su 99.4 5E-12 1.1E-16 142.5 15.6 186 457-679 11-225 (486)
177 PRK08451 DNA polymerase III su 99.4 2E-11 4.4E-16 137.4 20.3 188 458-682 10-226 (535)
178 PRK08727 hypothetical protein; 99.4 5.7E-12 1.2E-16 129.4 14.5 180 497-720 42-230 (233)
179 PRK05642 DNA replication initi 99.4 7.6E-12 1.6E-16 128.6 14.9 180 496-719 45-233 (234)
180 PRK14956 DNA polymerase III su 99.4 1.7E-11 3.6E-16 135.3 18.2 187 182-403 11-226 (484)
181 PRK04195 replication factor C 99.4 1.6E-11 3.5E-16 139.8 18.5 188 182-402 7-202 (482)
182 PRK07940 DNA polymerase III su 99.4 1.4E-11 3E-16 135.0 16.5 190 187-399 3-214 (394)
183 PRK13342 recombination factor 99.4 1.2E-11 2.7E-16 138.0 16.3 169 183-390 6-188 (413)
184 PRK14955 DNA polymerase III su 99.3 2E-11 4.3E-16 135.4 17.6 187 457-680 11-234 (397)
185 PRK00440 rfc replication facto 99.3 2.2E-11 4.7E-16 131.8 17.5 182 458-677 13-206 (319)
186 PTZ00112 origin recognition co 99.3 2.3E-11 5.1E-16 139.0 17.9 181 188-389 754-969 (1164)
187 PRK14954 DNA polymerase III su 99.3 3.6E-11 7.8E-16 138.3 19.5 190 458-679 12-233 (620)
188 PRK07003 DNA polymerase III su 99.3 3E-11 6.5E-16 137.9 18.4 186 182-402 9-223 (830)
189 PRK12323 DNA polymerase III su 99.3 1.6E-11 3.4E-16 138.5 16.0 186 182-402 9-228 (700)
190 PRK14962 DNA polymerase III su 99.3 3.1E-11 6.6E-16 135.5 17.9 174 182-390 7-210 (472)
191 PRK13407 bchI magnesium chelat 99.3 7.5E-12 1.6E-16 133.8 12.4 160 458-645 4-216 (334)
192 TIGR00390 hslU ATP-dependent p 99.3 9.6E-12 2.1E-16 133.9 13.1 176 190-367 13-343 (441)
193 TIGR02902 spore_lonB ATP-depen 99.3 1.5E-11 3.2E-16 140.8 15.3 198 182-408 58-313 (531)
194 COG1474 CDC6 Cdc6-related prot 99.3 2.5E-11 5.4E-16 131.8 16.2 179 495-687 41-250 (366)
195 PRK10787 DNA-binding ATP-depen 99.3 2.9E-11 6.3E-16 143.4 18.2 162 190-370 323-506 (784)
196 PF00308 Bac_DnaA: Bacterial d 99.3 4.2E-12 9.2E-17 128.9 9.6 171 496-681 34-215 (219)
197 COG1224 TIP49 DNA helicase TIP 99.3 4.5E-11 9.8E-16 123.1 16.9 128 556-721 292-432 (450)
198 PRK05342 clpX ATP-dependent pr 99.3 5E-11 1.1E-15 131.3 18.5 175 191-367 73-322 (412)
199 PRK09111 DNA polymerase III su 99.3 7.2E-11 1.6E-15 135.7 20.1 191 458-679 20-238 (598)
200 PRK05201 hslU ATP-dependent pr 99.3 9.4E-12 2E-16 134.0 11.6 176 190-367 16-345 (443)
201 TIGR01650 PD_CobS cobaltochela 99.3 1.2E-11 2.6E-16 130.3 12.1 138 494-647 62-235 (327)
202 PRK14948 DNA polymerase III su 99.3 7.3E-11 1.6E-15 136.6 19.7 190 457-677 11-225 (620)
203 TIGR03420 DnaA_homol_Hda DnaA 99.3 9.4E-11 2E-15 120.2 18.0 177 192-404 20-206 (226)
204 PRK00149 dnaA chromosomal repl 99.3 3.3E-11 7.1E-16 136.2 15.9 155 223-390 148-314 (450)
205 PRK06620 hypothetical protein; 99.3 1.3E-11 2.8E-16 124.7 11.3 145 497-678 45-193 (214)
206 PRK14950 DNA polymerase III su 99.3 8.5E-11 1.9E-15 136.4 19.3 184 458-678 12-225 (585)
207 KOG2028 ATPase related to the 99.3 5.8E-11 1.3E-15 122.3 15.6 189 183-409 132-347 (554)
208 TIGR00362 DnaA chromosomal rep 99.3 4.9E-11 1.1E-15 133.2 16.4 166 223-402 136-313 (405)
209 COG2812 DnaX DNA polymerase II 99.3 4.3E-11 9.3E-16 133.0 15.2 193 458-682 12-228 (515)
210 PF00308 Bac_DnaA: Bacterial d 99.3 1.7E-10 3.6E-15 117.2 18.3 163 223-400 34-209 (219)
211 PRK14961 DNA polymerase III su 99.3 8.6E-11 1.9E-15 128.9 17.3 193 182-403 9-224 (363)
212 TIGR02640 gas_vesic_GvpN gas v 99.3 1E-10 2.2E-15 122.4 17.1 132 223-370 21-198 (262)
213 COG1219 ClpX ATP-dependent pro 99.3 9.9E-11 2.2E-15 118.9 16.0 131 462-595 61-203 (408)
214 PRK14960 DNA polymerase III su 99.3 1.2E-10 2.6E-15 131.9 18.0 187 182-403 8-223 (702)
215 PLN03025 replication factor C 99.3 7.7E-11 1.7E-15 127.2 15.8 172 182-389 6-191 (319)
216 cd00009 AAA The AAA+ (ATPases 99.3 4.5E-11 9.7E-16 112.8 12.4 122 495-631 18-151 (151)
217 PRK14949 DNA polymerase III su 99.3 1.7E-10 3.7E-15 134.3 18.9 192 182-402 9-223 (944)
218 PHA02544 44 clamp loader, smal 99.3 9.9E-11 2.2E-15 126.5 16.0 158 182-369 14-172 (316)
219 CHL00081 chlI Mg-protoporyphyr 99.3 5.6E-11 1.2E-15 127.3 13.7 162 456-645 11-232 (350)
220 COG1220 HslU ATP-dependent pro 99.2 1.5E-10 3.3E-15 118.4 15.9 82 557-642 252-346 (444)
221 PRK12402 replication factor C 99.2 3.5E-10 7.5E-15 123.4 20.2 188 182-402 8-226 (337)
222 PRK14971 DNA polymerase III su 99.2 4.9E-10 1.1E-14 129.8 22.2 184 459-679 14-227 (614)
223 PRK07994 DNA polymerase III su 99.2 2.1E-10 4.6E-15 131.8 18.8 185 183-402 10-223 (647)
224 PRK08084 DNA replication initi 99.2 7.2E-10 1.6E-14 114.1 20.5 172 185-391 18-202 (235)
225 PRK06645 DNA polymerase III su 99.2 2.8E-10 6.1E-15 128.2 18.9 194 182-404 14-234 (507)
226 COG5271 MDN1 AAA ATPase contai 99.2 2.9E-10 6.3E-15 133.7 19.0 136 494-646 1541-1704(4600)
227 PRK06893 DNA replication initi 99.2 2.1E-10 4.6E-15 117.6 16.3 147 224-390 40-195 (229)
228 PRK09087 hypothetical protein; 99.2 8.3E-11 1.8E-15 119.9 12.7 172 497-721 45-222 (226)
229 PRK12422 chromosomal replicati 99.2 2E-10 4.3E-15 128.3 16.1 155 223-390 141-305 (445)
230 PRK14086 dnaA chromosomal repl 99.2 2.3E-10 5E-15 129.7 16.7 164 224-401 315-490 (617)
231 TIGR02030 BchI-ChlI magnesium 99.2 7.5E-11 1.6E-15 126.5 12.1 155 460-645 2-219 (337)
232 PRK14088 dnaA chromosomal repl 99.2 1.5E-10 3.2E-15 129.7 14.9 154 224-390 131-297 (440)
233 cd00009 AAA The AAA+ (ATPases 99.2 2.4E-10 5.2E-15 107.8 14.2 137 193-355 2-150 (151)
234 TIGR01650 PD_CobS cobaltochela 99.2 7.5E-11 1.6E-15 124.2 10.9 137 222-372 63-235 (327)
235 PRK14958 DNA polymerase III su 99.2 2.8E-10 6.1E-15 129.1 16.4 188 182-404 9-225 (509)
236 PRK14964 DNA polymerase III su 99.2 5E-10 1.1E-14 125.2 17.7 187 183-404 7-222 (491)
237 PRK08903 DnaA regulatory inact 99.2 1E-09 2.2E-14 112.6 18.8 176 185-401 14-201 (227)
238 PHA02244 ATPase-like protein 99.2 3.1E-10 6.8E-15 120.7 15.2 127 496-641 119-269 (383)
239 PRK08691 DNA polymerase III su 99.2 4.7E-10 1E-14 128.3 17.3 194 182-404 9-225 (709)
240 TIGR00382 clpX endopeptidase C 99.2 2.8E-10 6E-15 124.7 14.6 145 190-334 78-247 (413)
241 PRK08727 hypothetical protein; 99.2 1.1E-09 2.4E-14 112.5 18.1 145 223-389 41-195 (233)
242 PRK14963 DNA polymerase III su 99.2 9.5E-10 2.1E-14 124.5 19.1 175 182-390 7-209 (504)
243 COG1474 CDC6 Cdc6-related prot 99.2 1.5E-09 3.2E-14 118.0 19.8 162 189-371 17-204 (366)
244 KOG0745 Putative ATP-dependent 99.2 6E-10 1.3E-14 117.5 16.0 100 496-595 226-332 (564)
245 PF01078 Mg_chelatase: Magnesi 99.2 2.2E-11 4.7E-16 119.7 4.6 143 460-635 1-205 (206)
246 PRK14959 DNA polymerase III su 99.2 5.5E-10 1.2E-14 127.3 16.4 176 182-391 9-213 (624)
247 PRK07471 DNA polymerase III su 99.2 2E-09 4.3E-14 117.3 20.1 184 458-675 15-239 (365)
248 PRK13341 recombination factor 99.2 3.7E-10 8.1E-15 132.4 15.3 152 182-371 21-182 (725)
249 PRK14952 DNA polymerase III su 99.2 1.2E-09 2.5E-14 125.1 18.9 187 182-403 6-223 (584)
250 TIGR00678 holB DNA polymerase 99.1 4.4E-10 9.5E-15 111.8 13.5 143 495-665 13-183 (188)
251 PRK05642 DNA replication initi 99.1 1.3E-09 2.8E-14 112.1 17.2 146 223-390 45-200 (234)
252 PRK07764 DNA polymerase III su 99.1 9.8E-10 2.1E-14 130.4 18.4 186 182-402 8-224 (824)
253 PRK14957 DNA polymerase III su 99.1 1.7E-09 3.7E-14 122.6 19.2 187 182-403 9-224 (546)
254 TIGR02442 Cob-chelat-sub cobal 99.1 2.8E-10 6E-15 133.3 13.3 155 460-645 2-214 (633)
255 KOG0989 Replication factor C, 99.1 7.8E-10 1.7E-14 112.4 14.5 178 182-391 29-223 (346)
256 COG0714 MoxR-like ATPases [Gen 99.1 3.4E-10 7.3E-15 122.8 12.8 132 495-645 42-203 (329)
257 PRK05564 DNA polymerase III su 99.1 8.5E-10 1.8E-14 118.8 15.7 176 460-668 2-185 (313)
258 COG2607 Predicted ATPase (AAA+ 99.1 3.3E-09 7.1E-14 104.2 17.9 193 455-677 53-276 (287)
259 PRK09112 DNA polymerase III su 99.1 1.2E-09 2.5E-14 118.4 16.5 190 458-679 19-245 (351)
260 PRK05563 DNA polymerase III su 99.1 1.4E-09 3.1E-14 125.1 18.0 186 183-403 10-224 (559)
261 PRK07133 DNA polymerase III su 99.1 1.6E-09 3.5E-14 125.2 18.4 191 182-401 11-221 (725)
262 TIGR00764 lon_rel lon-related 99.1 2.3E-10 5E-15 132.5 11.3 55 454-523 10-64 (608)
263 COG5271 MDN1 AAA ATPase contai 99.1 3.1E-09 6.7E-14 125.5 20.1 132 223-370 888-1047(4600)
264 PF07728 AAA_5: AAA domain (dy 99.1 2.9E-11 6.2E-16 114.1 3.1 109 498-623 1-139 (139)
265 PRK14951 DNA polymerase III su 99.1 1.5E-09 3.3E-14 124.6 17.6 193 182-403 9-229 (618)
266 PRK05896 DNA polymerase III su 99.1 1.7E-09 3.6E-14 122.7 17.7 185 182-402 9-223 (605)
267 PF07724 AAA_2: AAA domain (Cd 99.1 8.8E-11 1.9E-15 114.2 6.3 111 495-611 2-131 (171)
268 TIGR02397 dnaX_nterm DNA polym 99.1 1.5E-09 3.3E-14 119.3 16.8 175 182-390 7-210 (355)
269 PRK14969 DNA polymerase III su 99.1 1.2E-09 2.5E-14 124.9 16.2 187 183-404 10-225 (527)
270 PRK14970 DNA polymerase III su 99.1 2.3E-09 4.9E-14 118.3 18.0 180 182-389 10-200 (367)
271 PHA02244 ATPase-like protein 99.1 4E-09 8.6E-14 112.4 18.5 122 223-359 119-263 (383)
272 PRK14087 dnaA chromosomal repl 99.1 1.8E-09 3.9E-14 121.1 16.4 168 223-403 141-323 (450)
273 PRK11331 5-methylcytosine-spec 99.1 7.7E-10 1.7E-14 120.8 12.4 121 496-631 194-357 (459)
274 PRK14953 DNA polymerase III su 99.1 3.7E-09 8.1E-14 119.3 18.0 192 183-403 10-224 (486)
275 COG2607 Predicted ATPase (AAA+ 99.1 6.7E-09 1.5E-13 102.1 17.2 168 182-377 53-246 (287)
276 PRK00440 rfc replication facto 99.1 5E-09 1.1E-13 113.3 18.1 174 182-390 10-195 (319)
277 PRK07399 DNA polymerase III su 99.1 4.6E-09 1E-13 112.2 17.5 183 460-676 2-223 (314)
278 TIGR02903 spore_lon_C ATP-depe 99.1 9.4E-09 2E-13 119.7 21.4 164 183-373 148-369 (615)
279 PRK06647 DNA polymerase III su 99.1 3.8E-09 8.3E-14 121.1 17.9 187 182-403 9-224 (563)
280 smart00382 AAA ATPases associa 99.1 6.6E-10 1.4E-14 103.9 9.7 129 496-632 2-147 (148)
281 PRK04132 replication factor C 99.1 1.7E-09 3.6E-14 127.5 14.9 146 496-665 564-723 (846)
282 PRK14965 DNA polymerase III su 99.0 3.1E-09 6.7E-14 122.9 16.8 186 182-402 9-223 (576)
283 PRK06305 DNA polymerase III su 99.0 6.2E-09 1.3E-13 116.8 18.6 175 182-390 10-214 (451)
284 PRK13407 bchI magnesium chelat 99.0 6.8E-10 1.5E-14 118.9 10.2 161 184-370 3-216 (334)
285 PRK05707 DNA polymerase III su 99.0 1.9E-09 4.1E-14 115.8 13.5 150 495-668 21-198 (328)
286 KOG1969 DNA replication checkp 99.0 7.4E-09 1.6E-13 115.9 17.5 166 494-686 324-519 (877)
287 COG0542 clpA ATP-binding subun 99.0 1.2E-09 2.5E-14 126.2 11.6 167 458-648 166-349 (786)
288 COG0470 HolB ATPase involved i 99.0 3.8E-09 8.2E-14 114.5 15.0 125 498-642 26-178 (325)
289 PF07728 AAA_5: AAA domain (dy 99.0 7E-10 1.5E-14 104.6 7.9 109 225-348 1-139 (139)
290 PRK08451 DNA polymerase III su 99.0 9.7E-09 2.1E-13 115.9 18.3 188 182-404 7-223 (535)
291 TIGR00368 Mg chelatase-related 99.0 2.1E-09 4.6E-14 121.2 12.6 144 459-635 189-394 (499)
292 PRK06620 hypothetical protein; 99.0 4.6E-09 1E-13 106.2 13.8 131 224-390 45-181 (214)
293 TIGR03015 pepcterm_ATPase puta 99.0 8.9E-09 1.9E-13 108.6 16.6 189 498-722 45-267 (269)
294 PRK09111 DNA polymerase III su 99.0 1.3E-08 2.8E-13 117.2 18.7 193 182-403 17-237 (598)
295 PRK14948 DNA polymerase III su 99.0 1.4E-08 2.9E-13 117.9 18.9 181 182-391 9-215 (620)
296 smart00382 AAA ATPases associa 99.0 2.9E-09 6.3E-14 99.5 10.5 128 223-357 2-147 (148)
297 PRK14955 DNA polymerase III su 99.0 9.2E-09 2E-13 114.2 15.8 175 182-390 9-220 (397)
298 PF06068 TIP49: TIP49 C-termin 99.0 2E-09 4.4E-14 113.3 9.7 66 462-535 24-91 (398)
299 COG0593 DnaA ATPase involved i 99.0 1.4E-08 2.9E-13 110.2 16.1 153 223-389 113-277 (408)
300 PF01078 Mg_chelatase: Magnesi 98.9 1E-09 2.2E-14 108.0 6.3 46 188-248 2-47 (206)
301 PRK14954 DNA polymerase III su 98.9 1.9E-08 4.1E-13 116.0 17.6 181 182-390 9-220 (620)
302 COG0714 MoxR-like ATPases [Gen 98.9 8.4E-09 1.8E-13 111.9 13.8 128 223-367 43-200 (329)
303 KOG1514 Origin recognition com 98.9 1.3E-08 2.8E-13 113.9 15.3 204 497-724 423-658 (767)
304 PRK13531 regulatory ATPase Rav 98.9 5E-09 1.1E-13 115.4 12.1 131 495-644 38-193 (498)
305 PRK11331 5-methylcytosine-spec 98.9 1.1E-08 2.4E-13 111.8 14.7 140 189-356 175-357 (459)
306 COG3829 RocR Transcriptional r 98.9 2.4E-09 5.2E-14 117.3 9.2 196 457-681 240-478 (560)
307 PRK09087 hypothetical protein; 98.9 1E-08 2.3E-13 104.5 13.4 137 223-390 44-187 (226)
308 PRK08058 DNA polymerase III su 98.9 4.4E-09 9.6E-14 113.7 11.0 154 460-643 3-180 (329)
309 PF07724 AAA_2: AAA domain (Cd 98.9 5.2E-09 1.1E-13 101.8 10.3 112 223-336 3-131 (171)
310 KOG0991 Replication factor C, 98.9 9.9E-09 2.1E-13 100.1 11.9 182 457-677 22-214 (333)
311 PF05621 TniB: Bacterial TniB 98.9 2.8E-08 6E-13 103.0 15.6 208 188-415 36-277 (302)
312 CHL00081 chlI Mg-protoporyphyr 98.9 8E-09 1.7E-13 110.8 12.0 160 184-369 12-231 (350)
313 PRK14950 DNA polymerase III su 98.9 3.3E-08 7.2E-13 114.9 17.7 191 182-401 9-223 (585)
314 PRK13765 ATP-dependent proteas 98.9 3.2E-09 7E-14 122.5 9.1 173 557-769 228-443 (637)
315 PF07726 AAA_3: ATPase family 98.9 3.6E-10 7.9E-15 101.8 0.7 104 498-623 1-129 (131)
316 smart00350 MCM minichromosome 98.9 8.6E-09 1.9E-13 117.9 11.9 163 464-646 205-401 (509)
317 TIGR02031 BchD-ChlD magnesium 98.9 1.4E-08 3E-13 117.7 13.4 132 496-645 16-174 (589)
318 PRK09112 DNA polymerase III su 98.9 6.9E-08 1.5E-12 104.7 17.9 182 183-393 17-235 (351)
319 TIGR02030 BchI-ChlI magnesium 98.9 1.9E-08 4.2E-13 108.0 13.2 158 186-369 1-218 (337)
320 KOG1969 DNA replication checkp 98.9 5.7E-08 1.2E-12 108.9 17.0 165 223-406 326-514 (877)
321 PF07726 AAA_3: ATPase family 98.9 1.2E-09 2.7E-14 98.4 3.1 104 225-348 1-129 (131)
322 COG0606 Predicted ATPase with 98.8 4.2E-09 9E-14 114.0 6.9 48 458-520 175-222 (490)
323 PRK09862 putative ATP-dependen 98.8 2E-08 4.2E-13 112.9 12.4 143 460-635 189-391 (506)
324 PRK06964 DNA polymerase III su 98.8 2.5E-08 5.5E-13 107.1 12.5 133 494-644 19-203 (342)
325 TIGR00678 holB DNA polymerase 98.8 3.9E-08 8.3E-13 97.8 13.0 143 222-390 13-183 (188)
326 COG2812 DnaX DNA polymerase II 98.8 2.2E-08 4.8E-13 111.7 11.9 194 183-405 10-226 (515)
327 KOG1942 DNA helicase, TBP-inte 98.8 4.7E-08 1E-12 98.4 12.6 105 555-678 296-414 (456)
328 PRK14971 DNA polymerase III su 98.8 1.3E-07 2.9E-12 109.7 18.1 175 182-390 10-214 (614)
329 COG1221 PspF Transcriptional r 98.8 1.5E-08 3.3E-13 109.4 9.6 198 460-686 76-313 (403)
330 TIGR02974 phageshock_pspF psp 98.8 4.1E-08 9E-13 105.9 12.7 169 496-682 22-233 (329)
331 TIGR00602 rad24 checkpoint pro 98.8 8.1E-08 1.7E-12 110.8 15.8 201 457-684 79-330 (637)
332 PRK06871 DNA polymerase III su 98.8 5.8E-08 1.2E-12 103.6 13.5 132 495-644 23-178 (325)
333 PF05621 TniB: Bacterial TniB 98.8 1.5E-07 3.3E-12 97.6 15.7 196 496-725 61-292 (302)
334 PRK07993 DNA polymerase III su 98.8 6.6E-08 1.4E-12 104.2 13.4 153 494-668 22-199 (334)
335 PRK13531 regulatory ATPase Rav 98.8 7.4E-08 1.6E-12 106.3 13.5 135 222-369 38-193 (498)
336 TIGR02442 Cob-chelat-sub cobal 98.7 3.9E-08 8.5E-13 115.3 11.7 157 186-368 1-212 (633)
337 COG1220 HslU ATP-dependent pro 98.7 8.4E-08 1.8E-12 98.7 12.3 82 284-367 252-346 (444)
338 smart00763 AAA_PrkA PrkA AAA d 98.7 8.4E-08 1.8E-12 102.4 12.8 161 463-647 52-329 (361)
339 PRK11608 pspF phage shock prot 98.7 4.3E-08 9.3E-13 105.9 10.7 192 462-682 6-240 (326)
340 TIGR02655 circ_KaiC circadian 98.7 3.7E-07 8E-12 104.0 18.1 78 492-569 259-367 (484)
341 PRK05564 DNA polymerase III su 98.7 1.7E-07 3.7E-12 101.0 14.5 152 187-370 2-165 (313)
342 PF13177 DNA_pol3_delta2: DNA 98.7 3.6E-08 7.8E-13 95.3 8.3 133 466-631 1-160 (162)
343 PRK07471 DNA polymerase III su 98.7 4E-07 8.6E-12 99.3 17.1 179 184-393 14-233 (365)
344 PRK08116 hypothetical protein; 98.7 2E-08 4.4E-13 105.1 6.7 130 496-643 114-258 (268)
345 PRK15424 propionate catabolism 98.7 7.1E-08 1.5E-12 109.7 11.6 194 460-681 217-464 (538)
346 COG1219 ClpX ATP-dependent pro 98.7 3.9E-08 8.4E-13 100.4 8.3 97 224-320 98-203 (408)
347 PRK08769 DNA polymerase III su 98.7 1.4E-07 3E-12 100.5 12.8 155 495-672 25-207 (319)
348 KOG2227 Pre-initiation complex 98.7 7.2E-07 1.6E-11 96.0 17.9 235 464-723 152-417 (529)
349 TIGR01817 nifA Nif-specific re 98.7 9.4E-08 2E-12 110.7 12.3 195 459-682 193-428 (534)
350 KOG0991 Replication factor C, 98.7 8E-08 1.7E-12 93.9 9.3 134 182-344 20-162 (333)
351 TIGR02329 propionate_PrpR prop 98.7 8.8E-08 1.9E-12 109.1 10.8 197 459-682 209-450 (526)
352 PF00158 Sigma54_activat: Sigm 98.7 4.3E-08 9.2E-13 95.1 6.9 110 496-624 22-155 (168)
353 PF00158 Sigma54_activat: Sigm 98.7 2.8E-07 6E-12 89.4 12.5 130 192-349 2-155 (168)
354 TIGR00602 rad24 checkpoint pro 98.6 3.2E-07 7E-12 105.8 15.0 169 182-370 77-287 (637)
355 PRK11388 DNA-binding transcrip 98.6 7.9E-08 1.7E-12 113.8 9.9 193 459-681 322-553 (638)
356 COG2204 AtoC Response regulato 98.6 1.2E-07 2.5E-12 104.5 10.3 199 460-686 139-378 (464)
357 PRK05022 anaerobic nitric oxid 98.6 1.4E-07 3.1E-12 108.2 11.5 194 461-684 186-422 (509)
358 TIGR03015 pepcterm_ATPase puta 98.6 1.8E-06 4E-11 90.9 19.1 172 225-410 45-249 (269)
359 COG3604 FhlA Transcriptional r 98.6 6.4E-08 1.4E-12 104.8 7.9 195 458-682 219-456 (550)
360 COG1224 TIP49 DNA helicase TIP 98.6 2.1E-06 4.5E-11 89.3 18.4 62 188-260 38-104 (450)
361 PRK15429 formate hydrogenlyase 98.6 3.7E-07 8E-12 108.9 14.9 196 459-683 373-610 (686)
362 PRK05707 DNA polymerase III su 98.6 5.6E-07 1.2E-11 96.8 14.9 150 222-393 21-198 (328)
363 PRK10820 DNA-binding transcrip 98.6 1.7E-07 3.6E-12 107.7 11.3 194 459-682 201-437 (520)
364 KOG2680 DNA helicase TIP49, TB 98.6 1E-06 2.2E-11 89.3 15.2 127 556-721 289-429 (454)
365 COG1239 ChlI Mg-chelatase subu 98.6 5.4E-07 1.2E-11 96.6 13.9 161 458-647 13-234 (423)
366 PRK07399 DNA polymerase III su 98.6 3.5E-07 7.6E-12 97.9 12.4 178 187-395 2-218 (314)
367 PRK06090 DNA polymerase III su 98.6 2.7E-07 5.8E-12 98.3 11.4 132 494-643 23-178 (319)
368 COG1239 ChlI Mg-chelatase subu 98.6 6.8E-07 1.5E-11 95.8 14.3 161 185-371 13-233 (423)
369 COG3829 RocR Transcriptional r 98.6 9.5E-08 2.1E-12 105.0 7.9 153 184-364 240-424 (560)
370 TIGR00368 Mg chelatase-related 98.6 4.3E-07 9.3E-12 102.7 12.8 144 186-360 189-394 (499)
371 COG0470 HolB ATPase involved i 98.6 3.2E-07 6.9E-12 99.5 11.3 148 191-367 3-178 (325)
372 KOG0745 Putative ATP-dependent 98.6 1.9E-07 4.1E-12 99.0 8.9 98 223-320 226-332 (564)
373 TIGR00764 lon_rel lon-related 98.6 1.3E-06 2.9E-11 101.5 16.7 53 183-250 12-64 (608)
374 PRK08699 DNA polymerase III su 98.5 2.7E-07 5.9E-12 99.1 10.1 132 494-643 19-183 (325)
375 COG1123 ATPase components of v 98.5 7.9E-08 1.7E-12 107.1 5.8 41 220-260 32-78 (539)
376 smart00350 MCM minichromosome 98.5 1.8E-07 3.9E-12 107.1 8.8 130 224-370 237-400 (509)
377 PRK08181 transposase; Validate 98.5 2.3E-07 5.1E-12 96.6 8.5 100 496-610 106-209 (269)
378 KOG0990 Replication factor C, 98.5 5.4E-07 1.2E-11 92.6 10.7 133 497-650 63-208 (360)
379 PRK08058 DNA polymerase III su 98.5 9E-07 1.9E-11 95.8 13.2 148 188-368 4-180 (329)
380 PRK08116 hypothetical protein; 98.5 5E-07 1.1E-11 94.6 10.6 123 223-359 114-251 (268)
381 COG1221 PspF Transcriptional r 98.5 3.4E-07 7.5E-12 99.1 9.5 127 184-335 73-224 (403)
382 PRK04132 replication factor C 98.5 1E-06 2.3E-11 104.3 14.2 148 226-396 567-729 (846)
383 PTZ00111 DNA replication licen 98.5 6.8E-07 1.5E-11 105.2 12.0 161 464-643 452-655 (915)
384 TIGR02031 BchD-ChlD magnesium 98.5 6.8E-07 1.5E-11 103.7 11.5 134 224-370 17-174 (589)
385 COG0606 Predicted ATPase with 98.5 7.5E-08 1.6E-12 104.4 3.1 49 185-248 175-223 (490)
386 PRK15424 propionate catabolism 98.4 6.3E-07 1.4E-11 102.1 9.7 151 186-364 216-406 (538)
387 PRK08181 transposase; Validate 98.4 1.3E-06 2.8E-11 91.0 11.3 100 223-335 106-209 (269)
388 PRK09183 transposase/IS protei 98.4 3.8E-07 8.3E-12 95.1 7.3 102 495-610 101-206 (259)
389 TIGR02974 phageshock_pspF psp 98.4 2E-06 4.4E-11 92.9 13.0 145 192-364 2-177 (329)
390 PRK06526 transposase; Provisio 98.4 2.4E-07 5.3E-12 96.0 5.5 71 495-567 97-171 (254)
391 COG2204 AtoC Response regulato 98.4 1.4E-06 3.1E-11 96.0 11.5 150 187-364 139-319 (464)
392 PRK06835 DNA replication prote 98.4 2.9E-07 6.2E-12 98.8 5.8 100 496-609 183-288 (329)
393 PRK11608 pspF phage shock prot 98.4 2.4E-06 5.2E-11 92.3 12.8 149 188-364 5-184 (326)
394 PRK08939 primosomal protein Dn 98.4 5.3E-07 1.1E-11 96.1 7.4 101 495-610 155-261 (306)
395 PRK10820 DNA-binding transcrip 98.4 5.6E-06 1.2E-10 95.2 16.1 152 184-363 199-381 (520)
396 PRK07952 DNA replication prote 98.4 8.4E-07 1.8E-11 91.1 8.3 100 497-610 100-205 (244)
397 PRK09183 transposase/IS protei 98.4 1.4E-06 2.9E-11 91.0 10.0 103 221-335 100-206 (259)
398 PF13173 AAA_14: AAA domain 98.4 2E-06 4.3E-11 79.7 10.0 118 224-361 3-126 (128)
399 PF01637 Arch_ATPase: Archaeal 98.4 3.8E-06 8.3E-11 86.0 13.1 180 192-393 2-229 (234)
400 KOG2035 Replication factor C, 98.4 6.5E-06 1.4E-10 83.0 13.9 151 496-673 34-224 (351)
401 PRK12377 putative replication 98.4 9.3E-07 2E-11 91.0 8.3 101 496-610 101-206 (248)
402 PF01695 IstB_IS21: IstB-like 98.4 3.1E-07 6.7E-12 90.1 4.5 101 495-610 46-150 (178)
403 PRK09302 circadian clock prote 98.4 6.5E-06 1.4E-10 94.8 16.2 78 492-569 269-377 (509)
404 PRK06964 DNA polymerase III su 98.4 1.6E-06 3.4E-11 93.3 10.3 132 221-369 19-203 (342)
405 PF13173 AAA_14: AAA domain 98.4 1.6E-06 3.5E-11 80.4 8.9 119 497-636 3-126 (128)
406 TIGR02329 propionate_PrpR prop 98.4 1.2E-06 2.7E-11 99.8 9.6 126 185-335 208-358 (526)
407 TIGR02915 PEP_resp_reg putativ 98.3 9.2E-07 2E-11 100.4 8.2 168 496-682 162-372 (445)
408 COG1484 DnaC DNA replication p 98.3 9.7E-07 2.1E-11 91.6 7.6 102 495-611 104-210 (254)
409 PRK09862 putative ATP-dependen 98.3 1.4E-06 3.1E-11 98.0 9.4 124 221-360 208-391 (506)
410 PRK15429 formate hydrogenlyase 98.3 4.5E-06 9.7E-11 99.6 14.2 150 186-364 373-554 (686)
411 PRK06526 transposase; Provisio 98.3 1.2E-06 2.5E-11 90.9 8.0 101 222-335 97-201 (254)
412 PF01637 Arch_ATPase: Archaeal 98.3 1.2E-06 2.5E-11 89.9 8.0 162 495-667 19-228 (234)
413 PF14532 Sigma54_activ_2: Sigm 98.3 9.6E-07 2.1E-11 83.0 6.7 106 193-335 2-110 (138)
414 PF13401 AAA_22: AAA domain; P 98.3 2.4E-06 5.3E-11 79.3 9.4 97 223-331 4-124 (131)
415 PRK05022 anaerobic nitric oxid 98.3 5.1E-06 1.1E-10 95.5 13.9 150 187-364 185-365 (509)
416 PF03215 Rad17: Rad17 cell cyc 98.3 8.3E-06 1.8E-10 92.6 15.3 174 495-683 44-269 (519)
417 PF12775 AAA_7: P-loop contain 98.3 5.7E-07 1.2E-11 94.3 5.4 136 222-371 32-194 (272)
418 PF01695 IstB_IS21: IstB-like 98.3 1.3E-06 2.7E-11 85.8 7.3 102 221-335 45-150 (178)
419 COG1484 DnaC DNA replication p 98.3 3.9E-06 8.5E-11 87.1 11.2 102 222-335 104-209 (254)
420 TIGR01817 nifA Nif-specific re 98.3 2.8E-06 6.1E-11 98.5 11.2 123 185-335 192-341 (534)
421 PRK11388 DNA-binding transcrip 98.3 8.7E-06 1.9E-10 96.5 15.6 151 185-363 321-499 (638)
422 PRK06921 hypothetical protein; 98.3 9.7E-07 2.1E-11 92.3 6.7 69 495-566 116-188 (266)
423 PF13401 AAA_22: AAA domain; P 98.3 3.3E-06 7.2E-11 78.3 9.5 99 496-608 4-126 (131)
424 PF13177 DNA_pol3_delta2: DNA 98.3 5.7E-06 1.2E-10 79.9 11.3 132 193-355 1-159 (162)
425 PRK06921 hypothetical protein; 98.3 3.1E-06 6.7E-11 88.5 10.0 105 222-335 116-225 (266)
426 PRK12377 putative replication 98.3 6.9E-06 1.5E-10 84.6 12.3 101 223-335 101-206 (248)
427 KOG1514 Origin recognition com 98.3 2.2E-05 4.7E-10 88.7 16.8 170 225-407 424-628 (767)
428 COG5245 DYN1 Dynein, heavy cha 98.3 6.9E-06 1.5E-10 97.8 13.3 131 493-645 1833-1964(3164)
429 PRK06835 DNA replication prote 98.3 5.4E-06 1.2E-10 89.1 11.7 101 223-335 183-289 (329)
430 PRK15115 response regulator Gl 98.3 5.3E-06 1.1E-10 94.2 12.0 167 496-681 157-366 (444)
431 COG3604 FhlA Transcriptional r 98.3 1.5E-06 3.3E-11 94.4 6.8 139 185-348 219-378 (550)
432 PRK06871 DNA polymerase III su 98.2 8.6E-06 1.9E-10 87.1 12.5 127 223-369 24-178 (325)
433 PF12774 AAA_6: Hydrolytic ATP 98.2 1.8E-05 3.8E-10 80.8 13.5 128 222-366 31-176 (231)
434 PF14532 Sigma54_activ_2: Sigm 98.2 7.2E-07 1.6E-11 83.9 3.1 86 496-609 21-109 (138)
435 PRK05917 DNA polymerase III su 98.2 6.7E-06 1.4E-10 86.0 10.4 120 495-632 18-154 (290)
436 PF03215 Rad17: Rad17 cell cyc 98.2 2.2E-05 4.9E-10 89.2 15.5 204 182-408 12-269 (519)
437 COG1122 CbiO ABC-type cobalt t 98.2 1.9E-07 4.1E-12 95.2 -1.1 116 220-335 27-158 (235)
438 PRK08769 DNA polymerase III su 98.2 3.5E-05 7.5E-10 82.3 15.6 151 223-394 26-204 (319)
439 PF05729 NACHT: NACHT domain 98.2 1.4E-05 3E-10 77.2 11.1 141 225-371 2-164 (166)
440 PRK07993 DNA polymerase III su 98.2 1.9E-05 4.1E-10 85.3 13.1 131 222-368 23-178 (334)
441 PRK13406 bchD magnesium chelat 98.2 7.4E-06 1.6E-10 94.4 10.5 123 496-636 25-173 (584)
442 PRK10923 glnG nitrogen regulat 98.2 1.2E-05 2.6E-10 91.9 12.3 169 496-682 161-371 (469)
443 PRK07952 DNA replication prote 98.1 9.6E-06 2.1E-10 83.4 9.8 100 224-335 100-205 (244)
444 PRK08939 primosomal protein Dn 98.1 8.2E-06 1.8E-10 87.0 9.5 70 222-293 155-228 (306)
445 PRK08699 DNA polymerase III su 98.1 8.6E-06 1.9E-10 87.6 9.5 131 221-368 19-183 (325)
446 TIGR01818 ntrC nitrogen regula 98.1 6.5E-06 1.4E-10 93.9 9.1 168 496-683 157-368 (463)
447 PRK06090 DNA polymerase III su 98.1 4.8E-05 1E-09 81.2 14.7 128 222-368 24-178 (319)
448 PRK10365 transcriptional regul 98.1 9.5E-06 2.1E-10 92.0 9.9 167 496-681 162-371 (441)
449 COG0488 Uup ATPase components 98.1 5.7E-05 1.2E-09 86.0 16.0 29 219-247 25-53 (530)
450 PRK11361 acetoacetate metaboli 98.1 2.1E-05 4.6E-10 89.6 12.6 168 496-682 166-376 (457)
451 PRK07276 DNA polymerase III su 98.1 7E-05 1.5E-09 78.7 15.0 155 494-676 22-199 (290)
452 KOG1970 Checkpoint RAD17-RFC c 98.1 6.7E-05 1.4E-09 82.6 15.0 174 497-684 111-322 (634)
453 KOG2035 Replication factor C, 98.1 0.00012 2.6E-09 74.0 15.7 173 187-393 11-223 (351)
454 COG4172 ABC-type uncharacteriz 98.1 7.9E-05 1.7E-09 79.1 14.8 30 220-249 33-62 (534)
455 KOG2227 Pre-initiation complex 98.1 7.3E-05 1.6E-09 80.9 14.8 186 189-394 150-364 (529)
456 PRK05818 DNA polymerase III su 98.1 2.1E-05 4.5E-10 80.5 10.3 121 494-632 5-147 (261)
457 cd01120 RecA-like_NTPases RecA 98.1 1.3E-05 2.9E-10 76.9 8.6 110 499-612 2-139 (165)
458 cd01120 RecA-like_NTPases RecA 98.0 1.9E-05 4.2E-10 75.8 9.2 110 226-336 2-138 (165)
459 KOG1051 Chaperone HSP104 and r 98.0 3.1E-05 6.6E-10 91.4 11.7 128 189-335 562-711 (898)
460 PF00910 RNA_helicase: RNA hel 98.0 8E-06 1.7E-10 73.1 5.3 94 499-609 1-107 (107)
461 smart00763 AAA_PrkA PrkA AAA d 98.0 1.6E-05 3.5E-10 85.2 8.2 80 190-277 52-143 (361)
462 PF09336 Vps4_C: Vps4 C termin 98.0 5.3E-06 1.1E-10 65.6 3.3 35 707-741 28-62 (62)
463 KOG2228 Origin recognition com 98.0 4E-05 8.6E-10 79.5 10.4 162 188-370 23-219 (408)
464 TIGR02237 recomb_radB DNA repa 98.0 4.1E-05 8.8E-10 77.4 10.3 78 219-296 8-111 (209)
465 KOG0990 Replication factor C, 97.9 1.3E-05 2.8E-10 82.7 6.2 157 183-371 35-204 (360)
466 KOG1942 DNA helicase, TBP-inte 97.9 0.00024 5.2E-09 72.2 15.0 27 222-248 63-89 (456)
467 TIGR02915 PEP_resp_reg putativ 97.9 5.1E-05 1.1E-09 86.2 11.3 145 189-364 139-317 (445)
468 PF05729 NACHT: NACHT domain 97.9 4.7E-05 1E-09 73.4 9.4 141 498-647 2-165 (166)
469 PF06068 TIP49: TIP49 C-termin 97.9 2.8E-05 6.1E-10 82.5 8.2 72 188-267 23-96 (398)
470 PF12775 AAA_7: P-loop contain 97.9 6E-06 1.3E-10 86.6 3.1 136 495-647 32-195 (272)
471 PTZ00111 DNA replication licen 97.9 1.8E-05 3.8E-10 93.6 7.1 129 222-367 491-654 (915)
472 PRK10923 glnG nitrogen regulat 97.9 0.0001 2.3E-09 84.2 13.4 145 188-363 137-315 (469)
473 TIGR02237 recomb_radB DNA repa 97.8 5.6E-05 1.2E-09 76.4 8.9 117 492-610 8-150 (209)
474 PRK07132 DNA polymerase III su 97.8 6.7E-05 1.4E-09 79.5 9.7 123 496-643 18-160 (299)
475 PF12774 AAA_6: Hydrolytic ATP 97.8 5.2E-05 1.1E-09 77.4 8.0 65 496-567 32-96 (231)
476 PF00931 NB-ARC: NB-ARC domain 97.8 0.00037 8.1E-09 74.0 15.0 168 195-392 2-196 (287)
477 PF03152 UFD1: Ubiquitin fusio 97.8 0.00042 9E-09 66.9 13.6 133 22-159 25-161 (176)
478 PRK06851 hypothetical protein; 97.8 0.00059 1.3E-08 74.0 16.1 34 497-530 215-251 (367)
479 PF00493 MCM: MCM2/3/5 family 97.8 2.1E-05 4.5E-10 85.2 4.9 165 464-648 26-224 (331)
480 TIGR02012 tigrfam_recA protein 97.8 0.00018 3.8E-09 76.7 11.6 115 219-333 51-190 (321)
481 PF03969 AFG1_ATPase: AFG1-lik 97.8 4.5E-05 9.8E-10 83.0 7.3 141 493-660 59-208 (362)
482 COG4619 ABC-type uncharacteriz 97.8 0.00016 3.5E-09 67.9 9.7 29 219-247 25-53 (223)
483 KOG1968 Replication factor C, 97.8 2.7E-05 5.7E-10 92.7 5.6 164 498-681 359-535 (871)
484 PRK10762 D-ribose transporter 97.7 2.3E-06 5E-11 98.5 -3.5 39 220-258 27-67 (501)
485 PLN03210 Resistant to P. syrin 97.7 0.00041 8.8E-09 87.8 16.2 154 187-371 182-365 (1153)
486 TIGR02012 tigrfam_recA protein 97.7 0.00013 2.9E-09 77.7 10.0 120 492-611 51-193 (321)
487 PRK13549 xylose transporter AT 97.7 4.8E-06 1E-10 96.0 -1.0 40 220-259 28-71 (506)
488 COG2884 FtsE Predicted ATPase 97.7 2.8E-05 6E-10 74.5 3.9 132 212-344 15-174 (223)
489 COG1618 Predicted nucleotide k 97.7 0.00012 2.6E-09 68.4 7.9 25 496-520 5-29 (179)
490 COG1373 Predicted ATPase (AAA+ 97.7 0.00088 1.9E-08 74.4 16.3 139 493-651 35-186 (398)
491 TIGR01618 phage_P_loop phage n 97.7 6.4E-05 1.4E-09 75.8 6.5 109 496-606 12-141 (220)
492 PF13191 AAA_16: AAA ATPase do 97.7 8E-05 1.7E-09 73.4 7.2 59 191-259 2-63 (185)
493 cd00983 recA RecA is a bacter 97.7 0.00037 8.1E-09 74.3 12.4 115 219-333 51-190 (325)
494 PLN03210 Resistant to P. syrin 97.7 0.00029 6.2E-09 89.2 13.1 156 459-647 181-366 (1153)
495 COG3283 TyrR Transcriptional r 97.7 0.00021 4.6E-09 74.6 9.7 168 498-682 229-432 (511)
496 COG3842 PotA ABC-type spermidi 97.6 9.3E-06 2E-10 86.9 -0.4 89 222-313 30-121 (352)
497 COG1618 Predicted nucleotide k 97.6 0.00086 1.9E-08 62.8 12.4 26 222-247 4-29 (179)
498 COG1116 TauB ABC-type nitrate/ 97.6 0.00032 7E-09 70.8 10.4 27 221-247 27-53 (248)
499 cd00983 recA RecA is a bacter 97.6 0.00023 5E-09 75.9 9.9 122 492-613 51-195 (325)
500 COG1126 GlnQ ABC-type polar am 97.6 6.8E-06 1.5E-10 80.4 -1.5 71 221-292 26-99 (240)
No 1
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-119 Score=977.60 Aligned_cols=680 Identities=55% Similarity=0.952 Sum_probs=631.8
Q ss_pred CCCCCeEEEecccCCCCcEEEECHhhHhhcCCCCCCeEEEeecCcceEEEEEEeCCCCCCCeEEEcHHHHhhcCCCCCCe
Q 044198 6 AKSPNRLIVEEALQDDNSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDDDTCDASKIRMNKVVRSNLRLRLGDL 85 (772)
Q Consensus 6 ~~~~~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~ 85 (772)
...+|.+.|.. .++++..|.+++..|..+++..| |.+.|..+...++.+..++. ....+.++...|.++.++.|+.
T Consensus 12 ~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~l~~g--~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~r~~l~~~~~~~ 87 (693)
T KOG0730|consen 12 KCPQNNLVVLS-INDDASVVVLSEGAMDKLGLLRG--VLLDGKKRREPVDAVVQDET-SELIGRQTMVSRSNLRLQLGRL 87 (693)
T ss_pred ccCCCCeEEec-CCCccchheecHHHHhhhcCCcc--eEEECccccCCccceeccCC-ccccchhhheeccchhhcccce
Confidence 34567777777 66777799999999999999999 89999876666554443444 6678889999999999999999
Q ss_pred EEEEEccCCCCCceeEeecccccccCcchhhHHHHHHHhhhcCCcCccCCcEEEEecCceeEEEEEEEecCCceEEeCCC
Q 044198 86 VSVKICNDVVNATKMHVLPLHDTIEGITGNLFDVYLKPYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGEYCHITPK 165 (772)
Q Consensus 86 v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~ 165 (772)
|.+.+++.+..+.++.+.|+..+.+++..+.++.+.+.|+...++|+..|+++ ..+....|++++..|.. .++++
T Consensus 88 ~~~~~~p~v~~~~~i~~l~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~v~~~ 162 (693)
T KOG0730|consen 88 LHSSDCPSVKRPARIAVLPVDDTSEGIAGELFDVLERPFLLEALRPLVKGDTF---AGLNPAEFKVLELDPSP--QVTPD 162 (693)
T ss_pred ecccCCCCccccceeeeeehhhccccchhhhhhhhhhhhhhhhhCccccccch---hhhhhhhhhccccccch--hcCcc
Confidence 99998777888888999999988888888888889999998888999889887 44556778888888766 88889
Q ss_pred ceEEecCCCCcccccCCCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHH
Q 044198 166 TEIFCEGEPLKREDEDRLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIAN 245 (772)
Q Consensus 166 t~i~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~ 245 (772)
|.+.+.+.+.+....+ .++++ .++||+..++..+++++.+|++++..+..+|+.+++++|+|||||||||.+++++|+
T Consensus 163 t~~~~~~~~~~~~~~~-~~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~ 240 (693)
T KOG0730|consen 163 TELSYLGEPAKREEEE-LPEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVAN 240 (693)
T ss_pred chhhhcCCCccccccc-ccccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHH
Confidence 9998888777665444 46777 899999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEEEEechhhhhhcccchHHHHHHHHHHHHHcC-CceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccC
Q 044198 246 ETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNA-PSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRA 324 (772)
Q Consensus 246 ~l~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~ 324 (772)
+.+++++.+++++++.++.|++++.++.+|+.+...+ |+++||||+|.++|++....+ .++|+..+|+++||+.....
T Consensus 241 e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~~ 319 (693)
T KOG0730|consen 241 EYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKPDA 319 (693)
T ss_pred HhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcCcC
Confidence 9999999999999999999999999999999999988 999999999999999877665 78999999999999999999
Q ss_pred ceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHH
Q 044198 325 HVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGA 404 (772)
Q Consensus 325 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~ 404 (772)
.++|+++||+|+.||+++|| |||++++++..|+..+|.+|++.+++.+.+.+++++..+|..|+||+|+|+.++|++|+
T Consensus 320 ~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~ 398 (693)
T KOG0730|consen 320 KVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREAS 398 (693)
T ss_pred cEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999999999999999999999998899999999999999999999999999
Q ss_pred HHhhhhhccccccccchhhHhhhhhhhccchhhhhhhhhcCcccchhhhcccCCcccccccchHHHHHHHhhhccccCCc
Q 044198 405 MQCIREKMDLIDLEEDTIDAEVLSSMYVTNENLNAAVAITSPSALREIAVEVPNVRWADIGGLDTVKRELQETVQYPVEH 484 (772)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~ 484 (772)
+.++++ ++++|..|+..+.|+++|+...+.|+++|+||||++++|++|++.|.||+++
T Consensus 399 ~~~~r~----------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~ 456 (693)
T KOG0730|consen 399 LQATRR----------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKH 456 (693)
T ss_pred HHHhhh----------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhc
Confidence 988765 4678899999999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCc
Q 044198 485 PEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDEL 564 (772)
Q Consensus 485 ~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEi 564 (772)
++.|.++|++|++|+|||||||||||++||++|++++++|++|++++++++|+|+||+.++++|++|++.+|||||||||
T Consensus 457 pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEi 536 (693)
T KOG0730|consen 457 PEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEI 536 (693)
T ss_pred hHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHh
Q 044198 565 DSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSC 644 (772)
Q Consensus 565 d~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~ 644 (772)
|++++.|+++ .++.++|++++||++|||+...++|+||||||||+.||+|++||||||++||||+||.+.|.+||+.+
T Consensus 537 Dsi~~~R~g~--~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~ 614 (693)
T KOG0730|consen 537 DALAGSRGGS--SSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQC 614 (693)
T ss_pred HhHhhccCCC--ccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHH
Confidence 9999999854 33669999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCCC
Q 044198 645 LRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRS 724 (772)
Q Consensus 645 ~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s 724 (772)
++++++..++|+++||+.|+|||||||.++|++|++.|+++.++. ..|+.+||++|++..++|
T Consensus 615 ~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a-----------------~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 615 AKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEA-----------------TEITWQHFEEALKAVRPS 677 (693)
T ss_pred HhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhccc-----------------ccccHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999864 369999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 044198 725 VSDSDVRKYQAFANT 739 (772)
Q Consensus 725 ~~~~~~~~y~~~~~~ 739 (772)
++.+++++|+.|.+.
T Consensus 678 ~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 678 LTSELLEKYEDFAAR 692 (693)
T ss_pred CCHHHHHHHHHHhhc
Confidence 999999999999864
No 2
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-115 Score=931.60 Aligned_cols=553 Identities=48% Similarity=0.851 Sum_probs=509.5
Q ss_pred CCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 044198 184 DDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKM 263 (772)
Q Consensus 184 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~ 263 (772)
++++|.+|||+++++.++.+++.. +.+|+.|..+|+.|++|||||||||||||+||+++|++++.+|+.++++++++.+
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 477899999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccccc----CceEEEEeeCCCCCCC
Q 044198 264 AGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSR----AHVMVIGATNRPNSID 339 (772)
Q Consensus 264 ~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~----~~v~vI~atn~~~~ld 339 (772)
.|+++++++.+|..|....|||+||||||++.++|...+.++++|++.||++.||++... ..|+||||||+|+.||
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD 343 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD 343 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC
Confidence 999999999999999999999999999999999999999999999999999999998754 5799999999999999
Q ss_pred hhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccc---
Q 044198 340 PALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLID--- 416 (772)
Q Consensus 340 ~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~--- 416 (772)
|+|||+|||+++|.+..|++.+|.+||+..++++.+..++++..+|..|+||+|+|+.+||.+|+..++++..+...
T Consensus 344 paLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~ 423 (802)
T KOG0733|consen 344 PALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPL 423 (802)
T ss_pred HHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887654221
Q ss_pred ----cccc---------h-----------------------------hhHhhhhhhhccchhhhhhhhhcCcccchhhhc
Q 044198 417 ----LEED---------T-----------------------------IDAEVLSSMYVTNENLNAAVAITSPSALREIAV 454 (772)
Q Consensus 417 ----~~~~---------~-----------------------------~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~ 454 (772)
..++ . ...+..+.+.+..+||..|+..++|++.|+.+.
T Consensus 424 ~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~ 503 (802)
T KOG0733|consen 424 TKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFA 503 (802)
T ss_pred ccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccce
Confidence 0000 0 011233456788899999999999999999999
Q ss_pred ccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchh
Q 044198 455 EVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 534 (772)
Q Consensus 455 ~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~ 534 (772)
.+|+++|+|||++++++.+|...|.+|+++++.|+.+|+..|.|+||+||||||||+||||+|++.+.+|++|+|++|++
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCC
Q 044198 535 MWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMID 614 (772)
Q Consensus 535 ~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 614 (772)
+|||+||++||.+|++|+..+||||||||+|+|+++|+.+ .++.+.|++||||++|||++.+.+|+|||||||||.||
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~--~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiID 661 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE--GSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIID 661 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC--CchhHHHHHHHHHHHhcccccccceEEEeecCCCcccc
Confidence 9999999999999999999999999999999999999875 35568999999999999999999999999999999999
Q ss_pred ccccCCCCccccccCCCCCHHHHHHHHHHhhc--cCCCCCcccHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044198 615 PALLRPGRLDQLIYIPLPDEHSRLQIFKSCLR--KSPVSKDIDLKAIAKYTH--GFSGADITEICQRACKCAIREEIEKD 690 (772)
Q Consensus 615 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~--~~~~~~~~~~~~la~~~~--g~sg~di~~l~~~a~~~a~~~~~~~~ 690 (772)
||+|||||||+.+|+++|+.++|.+||+.+++ +.+++.|+|+++||+.+. |||||||..||++|+..|+++.+...
T Consensus 662 pAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~ 741 (802)
T KOG0733|consen 662 PAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEI 741 (802)
T ss_pred hhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999 889999999999999886 99999999999999999999987521
Q ss_pred hhhccCCCCCCcccccccccHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhh
Q 044198 691 IKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSDVRKYQAFANTLQQ 742 (772)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~~~~~~y~~~~~~~~~ 742 (772)
. .....-........+|+.||++|++.++||+++.+.++|+.+++.++-
T Consensus 742 -~--~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~L 790 (802)
T KOG0733|consen 742 -D--SSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRSL 790 (802)
T ss_pred -c--ccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhcc
Confidence 1 111000011113468999999999999999999999999999988643
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.1e-101 Score=913.12 Aligned_cols=722 Identities=50% Similarity=0.831 Sum_probs=637.1
Q ss_pred eEEEecccCC--CCcEEEECHhhHhhcCCCCCCeEEEe-ecCcceEEEEEEe--CCCCCCCeEEEcHHHHhhcCCCCCCe
Q 044198 11 RLIVEEALQD--DNSVVGLHPLTMEKLDIFKYDTILIK-GKRRRNTICTAVD--DDTCDASKIRMNKVVRSNLRLRLGDL 85 (772)
Q Consensus 11 ~~~v~~~~~~--~~~~v~~~~~~~~~l~~~~g~~v~i~-~~~~~~~~~~~~~--~~~~~~~~i~~~~~~r~~~~~~~~~~ 85 (772)
.++|.++.++ +++.++|+|+.|.+||+.+||+|.|. |++ .+++.+|+ .++++.+.|++++.+|.|+|+++||.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (733)
T TIGR01243 3 ELRVAEAYPRDVGRGIVRIDRQTAARLGVEPGDFVEIEKGDR--SVVAIVWPLRPDDEGRGIIRMDGYLRANAGVTIGDT 80 (733)
T ss_pred EEEehhhhccCCCCCeEeeCHHHHHhcCCCCCCEEEEecCCC--ceeEEEEecCccccCCCEEeecHHHHhhcCCCCCCe
Confidence 4789999764 58899999999999999999999999 544 34566775 35778899999999999999999999
Q ss_pred EEEEEccCCCCCceeEeecccccccCcchhhHHHHHHHhhhcCCcCccCCcEEEEecCceeEEEEEEEecCCceEEeCCC
Q 044198 86 VSVKICNDVVNATKMHVLPLHDTIEGITGNLFDVYLKPYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGEYCHITPK 165 (772)
Q Consensus 86 v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~ 165 (772)
|+|+++ .++.+.+|.+.|...... +..+..+++.++. .+|+..|+.+.+........|+|+++.|.+++.++..
T Consensus 81 ~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~~~p~~~~~~~~~ 154 (733)
T TIGR01243 81 VTVERA-EVKEAKKVVLAPTQPIRF---GRDFVDYVKEFLL--GKPISKGETVIVPVLEGALPFVVVSTQPAGFVYVTEA 154 (733)
T ss_pred EEEeec-CCCccceEeecccccccc---ccchHHHHHHHHc--CCCCCCCCEEEecccCcceeEEEEecCCCCcEEECCC
Confidence 999985 477899999888643211 2334566777776 5889999998876544567899999999999999999
Q ss_pred ceEEecCCCCcccccCCCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHH
Q 044198 166 TEIFCEGEPLKREDEDRLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIAN 245 (772)
Q Consensus 166 t~i~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~ 245 (772)
|.+.+...+.........++++|++|+|++++++.|++++.+|+.+|++++.+++.+++++|||||||||||++++++|+
T Consensus 155 t~~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 155 TEVEIREKPVREEIERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred ceEEecCCccccccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 99987655443322224578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCc
Q 044198 246 ETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAH 325 (772)
Q Consensus 246 ~l~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~ 325 (772)
+++.+++.++++++.+++.|+.+..++.+|+.+....|++|||||+|.++++++...++.+.+++.+|+++|+++..+..
T Consensus 235 ~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 235 EAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred HhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 99999999999999999999999999999999999999999999999999988776677788999999999999988889
Q ss_pred eEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHH
Q 044198 326 VMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAM 405 (772)
Q Consensus 326 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 405 (772)
+++|++||+++.+|+++++++||+..++++.|+.++|.+||+.+.+.+.+..+.++..++..++||+++|+..+|++|++
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~ 394 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAM 394 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred Hhhhhhcc--ccccccchhhHhhhhhhhccchhhhhhhhhcCcccchhhhcccCCcccccccchHHHHHHHhhhccccCC
Q 044198 406 QCIREKMD--LIDLEEDTIDAEVLSSMYVTNENLNAAVAITSPSALREIAVEVPNVRWADIGGLDTVKRELQETVQYPVE 483 (772)
Q Consensus 406 ~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~ 483 (772)
.++++... ........+..+......++.+||..++..+.|+.+++...+.|.+.|++++|++.+|+.|.+.+.|+++
T Consensus 395 ~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~ 474 (733)
T TIGR01243 395 AALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLK 474 (733)
T ss_pred HHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhh
Confidence 88877543 2222222233344456678899999999999999999888899999999999999999999999999999
Q ss_pred chHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcC
Q 044198 484 HPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDE 563 (772)
Q Consensus 484 ~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDE 563 (772)
+++.+.++++.+++|+|||||||||||++|+++|++++.+|+.+++++++++|+|++++.++.+|+.|+...||||||||
T Consensus 475 ~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDE 554 (733)
T TIGR01243 475 HPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDE 554 (733)
T ss_pred CHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHH
Q 044198 564 LDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKS 643 (772)
Q Consensus 564 id~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~ 643 (772)
||++++.|+.. ...+..++++++||++||++....+++||+|||+|+.||+|++||||||++|+||+||.++|.+||+.
T Consensus 555 id~l~~~r~~~-~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~ 633 (733)
T TIGR01243 555 IDAIAPARGAR-FDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKI 633 (733)
T ss_pred hhhhhccCCCC-CCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHH
Confidence 99999988754 23344789999999999999888999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCC
Q 044198 644 CLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARR 723 (772)
Q Consensus 644 ~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~ 723 (772)
++++.++..++|++.||+.|+||||+||.++|++|++.|+++.......... ............|+++||++|+++++|
T Consensus 634 ~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~f~~al~~~~p 712 (733)
T TIGR01243 634 HTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKL-EVGEEEFLKDLKVEMRHFLEALKKVKP 712 (733)
T ss_pred HhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhh-hcccccccccCcccHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999987643210000 000000112347999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 044198 724 SVSDSDVRKYQAFANTLQQ 742 (772)
Q Consensus 724 s~~~~~~~~y~~~~~~~~~ 742 (772)
|+++++++.|++|.++|+.
T Consensus 713 s~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 713 SVSKEDMLRYERLAKELKR 731 (733)
T ss_pred CCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999853
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-87 Score=733.64 Aligned_cols=614 Identities=36% Similarity=0.584 Sum_probs=495.6
Q ss_pred hhHHHHHHHhhhcCCcCccCCcEEEEecC------------------ceeEEEEEEEecCC---ceEEeCCCceEEecCC
Q 044198 115 NLFDVYLKPYFLGHYRPVRKGDLFLVRGG------------------MRSVKFKVVDTEPG---EYCHITPKTEIFCEGE 173 (772)
Q Consensus 115 ~~~~~~l~~~~~~~~~~v~~g~~~~~~~~------------------~~~~~f~v~~~~~~---~~~~~~~~t~i~~~~~ 173 (772)
+..+..++.||. ..+.++.||+|.+..+ ...++|+|++.+|. .+++.+..|.++..+.
T Consensus 304 ~~~~~~l~~~f~-t~ril~~gdvf~i~~~~~~~~~~~~~~l~l~~~~d~~v~~~v~~~ep~~~~~~~i~~~~T~lv~~~~ 382 (953)
T KOG0736|consen 304 GNIDVVLKKHFK-TPRILQSGDVFCIPINSQMANLNGYPELPLWRETDFLVYKKVIEAEPGNESAYIIDTNHTSLVLVGA 382 (953)
T ss_pred hHHHHHHHHHhC-cceeeecCCEEEEeehhhhcccccchhhHhhhhccceeEEEEeecCCCccceEEEcCCCceEEEccc
Confidence 456678889997 5788999999987432 23578999999984 3566677888887543
Q ss_pred CCcccc---cCCCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe
Q 044198 174 PLKRED---EDRLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY 250 (772)
Q Consensus 174 ~~~~~~---~~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~ 250 (772)
...+.. .....-..+-..-+.+..+..+..++..++.. ...++.-...+||+|+||||||++++++|++++.+
T Consensus 383 ~ss~~~~lps~~~~l~n~~~~~~~~~~~~~l~~vl~p~~~~----s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h 458 (953)
T KOG0736|consen 383 TSSRVPLLPSSLSTLWNSLSPPGLEAKVLELVAVLSPQKQP----SGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLH 458 (953)
T ss_pred cccCCcCCChhhHHHhccCCCccchHHHHHHHHHhCcccCc----chhccccceEEEEeCCCCCChHHHHHHHHHHhCCc
Confidence 332200 00000012223344555555444444432221 12233344569999999999999999999999999
Q ss_pred EEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhh---cccccCceE
Q 044198 251 FLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMD---GMKSRAHVM 327 (772)
Q Consensus 251 ~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld---~~~~~~~v~ 327 (772)
++.++|.++.....+..+.++...|+.++...|+|||+-++|.+.-++.. ....++...+..++. .......++
T Consensus 459 ~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls~e~~~~~~~~~i 535 (953)
T KOG0736|consen 459 LLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLSNEDFKFSCPPVI 535 (953)
T ss_pred eEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHhcccccCCCCceE
Confidence 99999999999999999999999999999999999999999999854433 223455555544443 333567899
Q ss_pred EEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHh
Q 044198 328 VIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQC 407 (772)
Q Consensus 328 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~ 407 (772)
||++|+..+.+++.+++ -|.++|.++.|++++|.+||+.++....+..++.+..++.+|.||+.+|+.+++..+...+
T Consensus 536 vv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~ 613 (953)
T KOG0736|consen 536 VVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAA 613 (953)
T ss_pred EEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHH
Confidence 99999999999999998 7888999999999999999999999999999999999999999999999999987763322
Q ss_pred hhhhcccc---ccccchhhHhhhhhhhccchhhhhhhhhcCcccchhh-hcccCCcccccccchHHHHHHHhhhccccCC
Q 044198 408 IREKMDLI---DLEEDTIDAEVLSSMYVTNENLNAAVAITSPSALREI-AVEVPNVRWADIGGLDTVKRELQETVQYPVE 483 (772)
Q Consensus 408 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~-~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~ 483 (772)
..+..... ...+..-.........++++||.+++...+......+ ...+|+|+|+||||++++|.++.+.+..|++
T Consensus 614 ~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~ 693 (953)
T KOG0736|consen 614 KTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLK 693 (953)
T ss_pred HHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCccc
Confidence 22111100 0111111111224567899999999987655443332 4578999999999999999999999999999
Q ss_pred chHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcC
Q 044198 484 HPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDE 563 (772)
Q Consensus 484 ~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDE 563 (772)
|+++|.. |+++..|+|||||||||||.+|||+|+++..+|++|+|+||+++|+|+||+++|++|++||..+||||||||
T Consensus 694 hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDE 772 (953)
T KOG0736|consen 694 HPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDE 772 (953)
T ss_pred Chhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEecc
Confidence 9999987 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCCCCCCchhHHHHHHHHHhcCCC--CCCcEEEEeecCCCCCCCccccCCCCccccccCCCC-CHHHHHHH
Q 044198 564 LDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS--AKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLP-DEHSRLQI 640 (772)
Q Consensus 564 id~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~--~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p-~~~~r~~I 640 (772)
+|+++++||.++...+..+|+++|||.||||+. +...|+||+||||||.|||||+||||||+.+|++++ |.+.+..|
T Consensus 773 LDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~v 852 (953)
T KOG0736|consen 773 LDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRV 852 (953)
T ss_pred ccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHH
Confidence 999999999884444449999999999999997 678999999999999999999999999999999987 67779999
Q ss_pred HHHhhccCCCCCcccHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHh
Q 044198 641 FKSCLRKSPVSKDIDLKAIAKYT-HGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMK 719 (772)
Q Consensus 641 l~~~~~~~~~~~~~~~~~la~~~-~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~ 719 (772)
++...+++.++.++|+.++|+.+ ..|||||+.++|..|.+.|+++.+.......... +....+...|+++||.++++
T Consensus 853 L~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~--~e~~~~~v~V~~eDflks~~ 930 (953)
T KOG0736|consen 853 LEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISE--EEQESSSVRVTMEDFLKSAK 930 (953)
T ss_pred HHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccc--cccCCceEEEEHHHHHHHHH
Confidence 99999999999999999999998 6899999999999999999999875432221111 11122345799999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHHh
Q 044198 720 YARRSVSDSDVRKYQAFANTLQ 741 (772)
Q Consensus 720 ~~~~s~~~~~~~~y~~~~~~~~ 741 (772)
+++||++..++.+||.++.+|.
T Consensus 931 ~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 931 RLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred hcCCcccHHHHHHHHHHHHhhc
Confidence 9999999999999999999985
No 5
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-74 Score=623.56 Aligned_cols=497 Identities=35% Similarity=0.573 Sum_probs=427.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC----CeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCC
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETG----CYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKR 298 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~----~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~ 298 (772)
+.+|||+||+|||||.|++++++++. +++..++|+.+.........+.+..+|..+.+++|+|+++|++|.|+...
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s 510 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASAS 510 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccC
Confidence 45699999999999999999999874 56788999988777766777889999999999999999999999998733
Q ss_pred CCC---chhhHHHHHHHHHHHhhccc-ccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCC
Q 044198 299 EKT---HGEVEKRIVSQLLTLMDGMK-SRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMK 374 (772)
Q Consensus 299 ~~~---~~~~~~~v~~~L~~lld~~~-~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~ 374 (772)
+.. .+...+++...|.+....+. .+..+++||+.+....++|.|.++++|+..+.++.|+..+|.+||+..+.+..
T Consensus 511 ~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~ 590 (952)
T KOG0735|consen 511 SNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL 590 (952)
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhh
Confidence 222 22344555555555555443 34457999999999999999999999999999999999999999998776543
Q ss_pred c-ccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccccchhhHhhhhhhhccchhhhhhhhhcCcccchhhh
Q 044198 375 L-AEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEEDTIDAEVLSSMYVTNENLNAAVAITSPSALREIA 453 (772)
Q Consensus 375 l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~ 453 (772)
. ....|++.++..|+||...|+..++.+|...++...... ....++.++|.+++..+.|.++|...
T Consensus 591 ~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~-------------~~klltke~f~ksL~~F~P~aLR~ik 657 (952)
T KOG0735|consen 591 SDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN-------------GPKLLTKELFEKSLKDFVPLALRGIK 657 (952)
T ss_pred hhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc-------------CcccchHHHHHHHHHhcChHHhhhcc
Confidence 2 122356669999999999999999999988877433211 12268899999999999999999876
Q ss_pred cccC-CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccc
Q 044198 454 VEVP-NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 532 (772)
Q Consensus 454 ~~~~-~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l 532 (772)
...+ .+.|+||||+.++|+.+.+.++||.+++..|...+++.+.|+|||||||||||.||.++|..++.+|++|+|+++
T Consensus 658 ~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPEl 737 (952)
T KOG0735|consen 658 LVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPEL 737 (952)
T ss_pred ccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHH
Confidence 5544 499999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCC
Q 044198 533 LTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDM 612 (772)
Q Consensus 533 ~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 612 (772)
+++|+|.||+++|.+|.+|+...||||||||+|+++++||.+ ..|.++|++||||++|||.+..++|+|+|||.|||+
T Consensus 738 L~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD--sTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdl 815 (952)
T KOG0735|consen 738 LSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD--STGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDL 815 (952)
T ss_pred HHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC--CCCchHHHHHHHHHhhccccccceEEEEEecCCccc
Confidence 999999999999999999999999999999999999999864 345599999999999999999999999999999999
Q ss_pred CCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044198 613 IDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIK 692 (772)
Q Consensus 613 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~ 692 (772)
||||++||||+|+.+++|+|++.+|.+|++........+.++|++.+|.+|+|||||||+.++..|.+.|+++.+.....
T Consensus 816 iDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~~ 895 (952)
T KOG0735|consen 816 IDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKREDE 895 (952)
T ss_pred cCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998865421
Q ss_pred hccCCCCCCcccccccccHHHHHHHH--hhCCCCCCHHHHHHHHHHHHHHhhcc
Q 044198 693 KGQRENPEGAAGEVAEIKKEHFEESM--KYARRSVSDSDVRKYQAFANTLQQSR 744 (772)
Q Consensus 693 ~~~~~~~~~~~~~~~~i~~~~~~~al--~~~~~s~~~~~~~~y~~~~~~~~~~~ 744 (772)
. +..+.++...+.... .+.+||.+.-+-+.+.....+|...+
T Consensus 896 ~----------~~~p~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 939 (952)
T KOG0735|consen 896 E----------GVVPSIDDASLESIFSDSKRKPSRSALDNRKGQDVYSQFLSDE 939 (952)
T ss_pred c----------ccCCccchhhhhhhhhccCCCccccccchhhhhhHHHhhcCcc
Confidence 1 112234544444443 36788888888888888888877655
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-68 Score=605.09 Aligned_cols=489 Identities=54% Similarity=0.914 Sum_probs=452.4
Q ss_pred cccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceE
Q 044198 207 LPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSII 286 (772)
Q Consensus 207 ~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il 286 (772)
+|+.+++.++.+++.++++++++||||+|||+++++++.. +..+..+++++...++.++.+..++.+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 4678899999999999999999999999999999999999 666688999999999999999999999999999999999
Q ss_pred EeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHH
Q 044198 287 FIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVL 366 (772)
Q Consensus 287 ~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il 366 (772)
++||++.+.+.+.........+++.+++.++++.. +..+.+++.+|.+..+++++++++||+.++.+..|+...+.+|+
T Consensus 81 ~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 81 FIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred eechhhhcccCccccccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHH
Confidence 99999999999887666788899999999999999 55599999999999999999999999999999999999999999
Q ss_pred HHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccccchhhHhhhhhhhccchhhhhhhhhcCc
Q 044198 367 RIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEEDTIDAEVLSSMYVTNENLNAAVAITSP 446 (772)
Q Consensus 367 ~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~p 446 (772)
+.+...+....+.++..++..+.||+++++..+++++.+...++.. ........++.+++..++..+.|
T Consensus 160 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-----------~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 160 QIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-----------DLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-----------ccCcccccccHHHHHHHHHhcCc
Confidence 9999999888888999999999999999999999999888877642 01123456788899999999988
Q ss_pred ccchhhhcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 447 SALREIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 447 s~~~~~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
+ ++.....+.+.|.+++|++.+|+.+.+.+.+++++++.|.+.++++++|+|||||||||||+||+++|++++.+|+.
T Consensus 229 ~--~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~ 306 (494)
T COG0464 229 S--RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFIS 306 (494)
T ss_pred c--cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEE
Confidence 7 66778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEee
Q 044198 527 IKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGA 606 (772)
Q Consensus 527 v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a 606 (772)
+++++++++|+|+++++++.+|..|++.+||||||||+|++++.|+.+ ..+...|++++||.+||+++...+|+||+|
T Consensus 307 v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~--~~~~~~r~~~~lL~~~d~~e~~~~v~vi~a 384 (494)
T COG0464 307 VKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPS--EDGSGRRVVGQLLTELDGIEKAEGVLVIAA 384 (494)
T ss_pred eeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCC--CchHHHHHHHHHHHHhcCCCccCceEEEec
Confidence 999999999999999999999999999999999999999999999764 222347999999999999999999999999
Q ss_pred cCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCC--CCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 044198 607 TNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSP--VSKDIDLKAIAKYTHGFSGADITEICQRACKCAIR 684 (772)
Q Consensus 607 Tn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~--~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~ 684 (772)
||+|+.+|+|++||||||++++||+||.++|.+||+.+++... +..++++..+++.|+||||+||.++|++|++.+++
T Consensus 385 TN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~ 464 (494)
T COG0464 385 TNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALR 464 (494)
T ss_pred CCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998544 46889999999999999999999999999999999
Q ss_pred HHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 044198 685 EEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSDVRKYQAF 736 (772)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~~~~~~y~~~ 736 (772)
+... ..|+.+||.+|+++.+||++ |++|
T Consensus 465 ~~~~------------------~~~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 465 EARR------------------REVTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred Hhcc------------------CCccHHHHHHHHHhcCCCCC------hhhc
Confidence 8751 26999999999999999998 7777
No 7
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-61 Score=504.56 Aligned_cols=602 Identities=28% Similarity=0.423 Sum_probs=447.8
Q ss_pred eEEEecccCCC---CcEEEECHhhHhhcCCCCCCeEEEeecCcceEEEEEEeCCCCCCCeEEEcHHHHhhcCCCCCCeEE
Q 044198 11 RLIVEEALQDD---NSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDDDTCDASKIRMNKVVRSNLRLRLGDLVS 87 (772)
Q Consensus 11 ~~~v~~~~~~~---~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~v~ 87 (772)
.++|..+...+ .+..++||.++++-++ ..+... ..++.......++++.|.++..+|+|+++++|+.|.
T Consensus 10 ~~~v~k~ps~e~altn~a~v~~~DF~~~~~-----~~vd~~---~~~Fs~~~~~~i~~g~i~fs~~qR~wa~~Sl~qev~ 81 (744)
T KOG0741|consen 10 AFQVTKCPSNELALTNCAYVSPSDFRQFQV-----IIVDNF---HYVFSTEFTPSIPPGNIGFSLPQRKWAGWSLGQEVE 81 (744)
T ss_pred eeeeecCCchhhhccCcceeCcccccccee-----eEEeee---eEEEEeeccCCCCCceeccchhhhhhhhcccCceeE
Confidence 36676665532 6789999998865332 222211 245556666788999999999999999999999999
Q ss_pred EEEccCCC---CCceeEeec-c-c---ccccCcchh-hHHHHHHHhhhcCCcCccCCcEEEEecCc-eeEEEEEEEec--
Q 044198 88 VKICNDVV---NATKMHVLP-L-H---DTIEGITGN-LFDVYLKPYFLGHYRPVRKGDLFLVRGGM-RSVKFKVVDTE-- 155 (772)
Q Consensus 88 v~~~~~~~---~~~~v~~~~-~-~---~~~~~~~~~-~~~~~l~~~~~~~~~~v~~g~~~~~~~~~-~~~~f~v~~~~-- 155 (772)
|+++.... +...+++.. + . .+...+..+ ...++...|- ..++++|+.+.+..++ ..+.++|.+++
T Consensus 82 V~~~~~~~~~~~l~~m~le~dF~~k~~~~sep~Dad~ma~qF~~~y~---~q~fsvgQ~~~f~f~~~~~l~l~v~~ie~~ 158 (744)
T KOG0741|consen 82 VKPFTFDGSCDYLGSMTLEIDFLNKKNTTSEPFDADEMAKQFKRQYN---SQAFSVGQQLVFEFNGNKLLGLKVKDIEAF 158 (744)
T ss_pred EEecccCcccccceeEEEEehhhhcCCCCCCCCCHHHHHHHHHHHhc---CcccCCccEEEEEecCceEeeeEEEEEeee
Confidence 99875322 222333321 0 0 111222222 2222333332 4678999988776553 45667776653
Q ss_pred -C--------------CceEEeCCCceEEecCCC---Cc-------ccccC--CCCCCccc--cccCcHHHHHHH-HHHH
Q 044198 156 -P--------------GEYCHITPKTEIFCEGEP---LK-------REDED--RLDDVGYE--DVGGVRKQLGQI-REVV 205 (772)
Q Consensus 156 -~--------------~~~~~~~~~t~i~~~~~~---~~-------~~~~~--~~~~~~~~--~i~G~~~~~~~i-~~~i 205 (772)
| ..+++++.+|.|.+.... ++ +.... .-+++.|+ .|||++++...| |+++
T Consensus 159 D~~~~~~~~a~~~~~~~~~G~l~~nT~i~F~k~~~s~lnL~~~~~~k~~~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAF 238 (744)
T KOG0741|consen 159 DPGISEGESAVTKRQKIERGLLLGNTQIVFEKAENSSLNLIGKSKTKPASNSIINPDFNFESMGIGGLDKEFSDIFRRAF 238 (744)
T ss_pred ccccccCCcccccccceeeeEeecCcEEEEEeccCcceEeeccccccchhccccCCCCChhhcccccchHHHHHHHHHHH
Confidence 2 135788999999653221 11 01111 12455666 478999999998 8899
Q ss_pred HcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-eEEEEechhhhhhcccchHHHHHHHHHHHHHcC--
Q 044198 206 ELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGC-YFLCINGPEIMSKMAGESESNLREAFNVAEKNA-- 282 (772)
Q Consensus 206 ~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~-~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~-- 282 (772)
......|++.+++|+.+.+|+|||||||||||.+||.|.+.+++ ....|||++++++|+|+++++++.+|.+|++..
T Consensus 239 AsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~ 318 (744)
T KOG0741|consen 239 ASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRR 318 (744)
T ss_pred HhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHh
Confidence 99899999999999999999999999999999999999999975 468899999999999999999999999997632
Q ss_pred ------CceEEeccccccccCCCCCch--hhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEe
Q 044198 283 ------PSIIFIDEIDSIAPKREKTHG--EVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDI 354 (772)
Q Consensus 283 ------p~il~iDEid~l~~~~~~~~~--~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i 354 (772)
-+||++||||++|.+|++..+ .+.+.+++||++-|||..+-.+++|||.||+.+.||+||.|||||...+++
T Consensus 319 ~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEI 398 (744)
T KOG0741|consen 319 LGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEI 398 (744)
T ss_pred hCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEE
Confidence 469999999999999886543 577899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccCC----cccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccccchhhHhhhhhh
Q 044198 355 GVPDEVGRLEVLRIHTKNMK----LAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEEDTIDAEVLSSM 430 (772)
Q Consensus 355 ~~p~~~~r~~Il~~~~~~~~----l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (772)
..||+..|++||++|+++|. +..++|++++|..|..|+|++|+.+++.|...++.+....- .....+....+.+
T Consensus 399 sLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~--~~~~~~~~~~e~l 476 (744)
T KOG0741|consen 399 SLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAG--GKVEVDPVAIENL 476 (744)
T ss_pred eCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccC--cceecCchhhhhe
Confidence 99999999999999998875 56889999999999999999999999999988887765432 1133445556788
Q ss_pred hccchhhhhhhhhcCcccchh-----hhcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCC
Q 044198 431 YVTNENLNAAVAITSPSALRE-----IAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPP 505 (772)
Q Consensus 431 ~v~~~d~~~al~~~~ps~~~~-----~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~Gpp 505 (772)
.++++||.+|+..++|+.... ......-+.|..- +-+.+.+... .....+....++..++||.|||
T Consensus 477 kV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~-----v~~il~~G~l----lv~qvk~s~~s~lvSvLl~Gp~ 547 (744)
T KOG0741|consen 477 KVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPP-----VTRILDDGKL----LVQQVKNSERSPLVSVLLEGPP 547 (744)
T ss_pred eecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeeccc-----HHHHHhhHHH----HHHHhhccccCcceEEEEecCC
Confidence 999999999999999986532 1222233455432 1111111100 0111222234667789999999
Q ss_pred CCchhHHHHHHHHHhCCcEEEEecccchhcccccchH----HHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCch
Q 044198 506 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEA----NVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGV 581 (772)
Q Consensus 506 GtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~----~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~ 581 (772)
|+|||+||..+|...++||+.+-.++- .+|-+|. +++.+|+.|+++.-+||++|+|+.|.....-+ --.+
T Consensus 548 ~sGKTaLAA~iA~~S~FPFvKiiSpe~---miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIG---PRfS 621 (744)
T KOG0741|consen 548 GSGKTALAAKIALSSDFPFVKIISPED---MIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIG---PRFS 621 (744)
T ss_pred CCChHHHHHHHHhhcCCCeEEEeChHH---ccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccC---chhh
Confidence 999999999999999999999877764 3455543 68999999999999999999999998765432 0114
Q ss_pred hHHHHHHHHHhcCCCC-CCcEEEEeecCCCCCCCc-cccCCCCccccccCCCCCH-HHHHHHHH
Q 044198 582 DRIVNQLLTEMDGLSA-KKTVFVIGATNRPDMIDP-ALLRPGRLDQLIYIPLPDE-HSRLQIFK 642 (772)
Q Consensus 582 ~~~~~~lL~~ld~~~~-~~~v~vi~aTn~~~~ld~-allrpgRf~~~i~~~~p~~-~~r~~Il~ 642 (772)
+-+++.|+..|...++ .++.+|++||.+.+.|.+ .++. -|+..+.+|..+. ++..+++.
T Consensus 622 N~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 622 NLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred HHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 5566666666766644 457889999998877765 4444 7899999996654 55566654
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-60 Score=484.38 Aligned_cols=252 Identities=46% Similarity=0.811 Sum_probs=239.8
Q ss_pred hcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccc
Q 044198 453 AVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 532 (772)
Q Consensus 453 ~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l 532 (772)
..+.|.++|+||||+++..+++++.++.|+++|++|.++|+.||+|+|||||||||||+||||+|+..++.|+.|.+++|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCc-hhHHHHHHHHHhcCCCCCCcEEEEeecCCCC
Q 044198 533 LTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGG-VDRIVNQLLTEMDGLSAKKTVFVIGATNRPD 611 (772)
Q Consensus 533 ~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~-~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 611 (772)
+.+|+|++.+.+|++|+.|+..+||||||||||+++++|.++....+. .+|.+-+||++|||+.+.++|=||+||||++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc
Confidence 999999999999999999999999999999999999999776333222 7888999999999999999999999999999
Q ss_pred CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 044198 612 MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDI 691 (772)
Q Consensus 612 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~ 691 (772)
.|||||+||||||++|+||+||.+.|.+||+.|.++|.+..++|++.||+.|+|+|||||+++|.+|++.|+|+..
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R---- 377 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR---- 377 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred hhccCCCCCCcccccccccHHHHHHHHhhCCC
Q 044198 692 KKGQRENPEGAAGEVAEIKKEHFEESMKYARR 723 (772)
Q Consensus 692 ~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~ 723 (772)
..||++||.+|.+++-.
T Consensus 378 ---------------~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 378 ---------------DEVTMEDFLKAVEKVVK 394 (406)
T ss_pred ---------------CeecHHHHHHHHHHHHh
Confidence 26999999999998743
No 9
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-56 Score=457.46 Aligned_cols=287 Identities=40% Similarity=0.682 Sum_probs=259.6
Q ss_pred hhhhcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEec
Q 044198 450 REIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKG 529 (772)
Q Consensus 450 ~~~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~ 529 (772)
+++....|+++|+||.|+.++|+.|+++|..|+..|+.|+. .++|.+|+|++||||||||+||||+|++++..|+.|+.
T Consensus 200 rdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSs 278 (491)
T KOG0738|consen 200 RDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSS 278 (491)
T ss_pred HHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEech
Confidence 34566789999999999999999999999999999999987 56889999999999999999999999999999999999
Q ss_pred ccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCC----CCcEEEEe
Q 044198 530 PELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSA----KKTVFVIG 605 (772)
Q Consensus 530 ~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~----~~~v~vi~ 605 (772)
+.+.++|-|+||+.+|-+|+.|+..+|++|||||||+|+.+|+.+ ++++.++|+.++||.+|||+.. .+.|+|+|
T Consensus 279 stltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s-~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLA 357 (491)
T KOG0738|consen 279 STLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS-SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLA 357 (491)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc-cchhHHHHHHHHHHHHhhccccccccceeEEEEe
Confidence 999999999999999999999999999999999999999999987 6778899999999999999853 24599999
Q ss_pred ecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 044198 606 ATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIRE 685 (772)
Q Consensus 606 aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~ 685 (772)
|||.||.||+|++| ||.+.||+|+||.++|..+++..++..+++++++++.||+.++||||+||.++|++|+++++|+
T Consensus 358 ATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR 435 (491)
T KOG0738|consen 358 ATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRR 435 (491)
T ss_pred ccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhh
Q 044198 686 EIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSDVRKYQAFANTLQQ 742 (772)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~~~~~~y~~~~~~~~~ 742 (772)
.+.......-..... .+...+|+.+||++|+++++||++..++.+||+|.++|++
T Consensus 436 ~i~g~~~~ei~~lak--E~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 436 KIAGLTPREIRQLAK--EEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGS 490 (491)
T ss_pred HHhcCCcHHhhhhhh--hccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcC
Confidence 774321100000000 0112479999999999999999999999999999999864
No 10
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-52 Score=426.65 Aligned_cols=248 Identities=52% Similarity=0.849 Sum_probs=232.1
Q ss_pred CCCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q 044198 181 DRLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIM 260 (772)
Q Consensus 181 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~ 260 (772)
+..++++|++|||+++|+++|++.+++|+.+|++|+.+|+.||+|||||||||||||+||+|+|++.++.|+.+.|+++.
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchh---hHHHHHHHHHHHhhcccccCceEEEEeeCCCCC
Q 044198 261 SKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGE---VEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNS 337 (772)
Q Consensus 261 ~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~---~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ 337 (772)
.+|.|+....++++|+.|+.+.||||||||||++..+|...... .-+|..-+|++.|||+..+.+|-||+|||+++.
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~ 302 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI 302 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc
Confidence 99999999999999999999999999999999999888654332 234666678889999999999999999999999
Q ss_pred CChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhcccccc
Q 044198 338 IDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDL 417 (772)
Q Consensus 338 ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 417 (772)
|||||.||||||+.|+||.|+.+.|.+||++|+++|.+.+++|++.+|+.|+||+|+|+.++|.+|.+.++|...
T Consensus 303 LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R----- 377 (406)
T COG1222 303 LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR----- 377 (406)
T ss_pred cChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred ccchhhHhhhhhhhccchhhhhhhhhcC
Q 044198 418 EEDTIDAEVLSSMYVTNENLNAAVAITS 445 (772)
Q Consensus 418 ~~~~~~~~~~~~~~v~~~d~~~al~~~~ 445 (772)
..++++||..|..++.
T Consensus 378 ------------~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 378 ------------DEVTMEDFLKAVEKVV 393 (406)
T ss_pred ------------CeecHHHHHHHHHHHH
Confidence 4578999999987753
No 11
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-51 Score=401.73 Aligned_cols=289 Identities=35% Similarity=0.652 Sum_probs=260.9
Q ss_pred hhhcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecc
Q 044198 451 EIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 530 (772)
Q Consensus 451 ~~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~ 530 (772)
.+..+.|++.|+|+.|++.+|+.|++.+..|++.|.+|.. +..|.+|+||||||||||+.||+|+|++.+..|++|+.+
T Consensus 122 AIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSS 200 (439)
T KOG0739|consen 122 AIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 200 (439)
T ss_pred hhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehH
Confidence 3567899999999999999999999999999999999986 677899999999999999999999999999999999999
Q ss_pred cchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-CCCcEEEEeecCC
Q 044198 531 ELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-AKKTVFVIGATNR 609 (772)
Q Consensus 531 ~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-~~~~v~vi~aTn~ 609 (772)
||+++|+|+||+.++++|+.||...|+||||||||++++.|+. ++++..+|+..+||.+|.|+. ...+|+|++|||-
T Consensus 201 DLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e--nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 201 DLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE--NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC--CchHHHHHHHHHHHHhhhccccCCCceEEEecCCC
Confidence 9999999999999999999999999999999999999999876 466779999999999999984 5678999999999
Q ss_pred CCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044198 610 PDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIE 688 (772)
Q Consensus 610 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~ 688 (772)
||.||.|+.| ||+++||+|+|+..+|..+|+.++...+.. .+.|+.+|+++|+||||+||.-+++.|.+.++|....
T Consensus 279 Pw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739|consen 279 PWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred chhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhh
Confidence 9999999999 999999999999999999999999887655 6789999999999999999999999999999999877
Q ss_pred HhhhhccCC--CCC-------------C---------c-c--cccccccHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHh
Q 044198 689 KDIKKGQRE--NPE-------------G---------A-A--GEVAEIKKEHFEESMKYARRSVSDSDVRKYQAFANTLQ 741 (772)
Q Consensus 689 ~~~~~~~~~--~~~-------------~---------~-~--~~~~~i~~~~~~~al~~~~~s~~~~~~~~y~~~~~~~~ 741 (772)
+.+.+.... +.. . . + --.++||+.||.+++...+|.++..++.+.++|.+.|+
T Consensus 357 AthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFG 436 (439)
T KOG0739|consen 357 ATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFG 436 (439)
T ss_pred hhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhc
Confidence 654433221 100 0 0 0 11468999999999999999999999999999999998
Q ss_pred hcc
Q 044198 742 QSR 744 (772)
Q Consensus 742 ~~~ 744 (772)
+++
T Consensus 437 qEg 439 (439)
T KOG0739|consen 437 QEG 439 (439)
T ss_pred cCC
Confidence 864
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-50 Score=385.30 Aligned_cols=248 Identities=44% Similarity=0.766 Sum_probs=235.8
Q ss_pred ccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchh
Q 044198 455 EVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 534 (772)
Q Consensus 455 ~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~ 534 (772)
+.|.++|.||||++-.|+++++.++.|+.+.++++..|+.||+|+|+|||||||||+||+|+|+.....|+.|.|++++.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCC-chhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCC
Q 044198 535 MWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGG-GVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMI 613 (772)
Q Consensus 535 ~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~-~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l 613 (772)
+|.|+..+.+|.+|..|+..+|+||||||+|+++.+|-....... ...|++-+||++|||+....+|-||+|||+.+.|
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 999999999999999999999999999999999999965432222 2778999999999999999999999999999999
Q ss_pred CccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 044198 614 DPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKK 693 (772)
Q Consensus 614 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 693 (772)
|||++||||+|+.|+||+||..+++-+|.....++.+++++|++.+....+..||+||.++|++|++.|++++.
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nr------ 381 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENR------ 381 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccCCCCCCcccccccccHHHHHHHHhhC
Q 044198 694 GQRENPEGAAGEVAEIKKEHFEESMKYA 721 (772)
Q Consensus 694 ~~~~~~~~~~~~~~~i~~~~~~~al~~~ 721 (772)
+.|...||+++.+..
T Consensus 382 -------------yvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 382 -------------YVVLQKDFEKAYKTV 396 (408)
T ss_pred -------------eeeeHHHHHHHHHhh
Confidence 469999999999875
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-48 Score=376.52 Aligned_cols=260 Identities=42% Similarity=0.732 Sum_probs=240.9
Q ss_pred hcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccc
Q 044198 453 AVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 532 (772)
Q Consensus 453 ~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l 532 (772)
...+|+-+|+-+||++...+++++.++.|.+||++|+.+|+..|+|+|||||||||||.||+++|+...+.|++|+++++
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgsel 217 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 217 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHH
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCC-CchhHHHHHHHHHhcCCCCCCcEEEEeecCCCC
Q 044198 533 LTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDG-GGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPD 611 (772)
Q Consensus 533 ~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~-~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 611 (772)
..+|+|+..+.+|++|-.|+..+|+|||.||||++...|..+++.. ....|..-+||++|||++..+++-||+|||+.+
T Consensus 218 vqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnrid 297 (404)
T KOG0728|consen 218 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRID 297 (404)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccc
Confidence 9999999999999999999999999999999999999997653322 226788889999999999999999999999999
Q ss_pred CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 044198 612 MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDI 691 (772)
Q Consensus 612 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~ 691 (772)
.||||++||||+|+.|+||+|++++|.+|++.+.+++++...+++..+|+...|.||+++..+|.+|.+.|+++..
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerr---- 373 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERR---- 373 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhh----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred hhccCCCCCCcccccccccHHHHHHHHhhCCCCCCHHHHH
Q 044198 692 KKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSDVR 731 (772)
Q Consensus 692 ~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~~~~~ 731 (772)
..||++||+-|..++-..-++..+.
T Consensus 374 ---------------vhvtqedfemav~kvm~k~~e~nms 398 (404)
T KOG0728|consen 374 ---------------VHVTQEDFEMAVAKVMQKDSEKNMS 398 (404)
T ss_pred ---------------ccccHHHHHHHHHHHHhccccccch
Confidence 3699999999998875544444433
No 14
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.6e-46 Score=417.63 Aligned_cols=398 Identities=25% Similarity=0.406 Sum_probs=307.8
Q ss_pred CCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHH
Q 044198 282 APSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVG 361 (772)
Q Consensus 282 ~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~ 361 (772)
.|.++++.|+|.++.+ . .++..|.++....+.....+|+.+. .-.+++.|. ++-..++++.|+.++
T Consensus 81 ~~~~~vl~d~h~~~~~-----~----~~~r~l~~l~~~~~~~~~~~i~~~~--~~~~p~el~---~~~~~~~~~lP~~~e 146 (489)
T CHL00195 81 TPALFLLKDFNRFLND-----I----SISRKLRNLSRILKTQPKTIIIIAS--ELNIPKELK---DLITVLEFPLPTESE 146 (489)
T ss_pred CCcEEEEecchhhhcc-----h----HHHHHHHHHHHHHHhCCCEEEEEcC--CCCCCHHHH---hceeEEeecCcCHHH
Confidence 3789999999988832 1 2334444443333333444444443 345788887 466778999999999
Q ss_pred HHHHHHHHhccCCc-ccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccccchhhHhhhhhhhccchhhhhh
Q 044198 362 RLEVLRIHTKNMKL-AEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEEDTIDAEVLSSMYVTNENLNAA 440 (772)
Q Consensus 362 r~~Il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~a 440 (772)
..++++........ .++.+++.+++.+.|++..++..++..+....- .++ .+.... +. +...+.
T Consensus 147 i~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~~-----~~~-------~~~~~~--i~-~~k~q~ 211 (489)
T CHL00195 147 IKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIATYK-----TID-------ENSIPL--IL-EEKKQI 211 (489)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----CCC-------hhhHHH--HH-HHHHHH
Confidence 99999877643322 234468899999999999999988776432110 000 000000 00 000011
Q ss_pred hhhcCcccchhhhcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh
Q 044198 441 VAITSPSALREIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC 520 (772)
Q Consensus 441 l~~~~ps~~~~~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~ 520 (772)
+.. ... .....+.++|++|+|++.+|+.+.+.... ......++|+++++|+|||||||||||++|+++|+++
T Consensus 212 ~~~---~~~--le~~~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 212 ISQ---TEI--LEFYSVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred Hhh---hcc--ccccCCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 111 100 11223577899999999999998865432 2344567899999999999999999999999999999
Q ss_pred CCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCc
Q 044198 521 QANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKT 600 (772)
Q Consensus 521 ~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~ 600 (772)
+.+|+.++++++.++|+|+++.+++++|+.|+..+||||||||||.++..+... ++++...+++++||+.|+. ...+
T Consensus 284 ~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~-~d~~~~~rvl~~lL~~l~~--~~~~ 360 (489)
T CHL00195 284 QLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK-GDSGTTNRVLATFITWLSE--KKSP 360 (489)
T ss_pred CCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC-CCchHHHHHHHHHHHHHhc--CCCc
Confidence 999999999999999999999999999999999999999999999998765433 4556689999999999985 3568
Q ss_pred EEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC--CcccHHHHHHHcCCCCHHHHHHHHHHH
Q 044198 601 VFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS--KDIDLKAIAKYTHGFSGADITEICQRA 678 (772)
Q Consensus 601 v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~--~~~~~~~la~~~~g~sg~di~~l~~~a 678 (772)
++||+|||+++.|||+++||||||++++|++|+.++|.+||+.++++.... .+.|++.||+.|+||||+||+++|.+|
T Consensus 361 V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA 440 (489)
T CHL00195 361 VFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEA 440 (489)
T ss_pred eEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999886433 578999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCCC--CCHHHHHHHHHHHHH
Q 044198 679 CKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRS--VSDSDVRKYQAFANT 739 (772)
Q Consensus 679 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s--~~~~~~~~y~~~~~~ 739 (772)
+..|..+. ..++.+||..|++++.|+ ...++++.+++|...
T Consensus 441 ~~~A~~~~--------------------~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 441 MYIAFYEK--------------------REFTTDDILLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred HHHHHHcC--------------------CCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 98887543 269999999999999996 577899999999984
No 15
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-48 Score=408.45 Aligned_cols=244 Identities=40% Similarity=0.693 Sum_probs=230.7
Q ss_pred cCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhc
Q 044198 456 VPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 535 (772)
Q Consensus 456 ~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~ 535 (772)
..+++|+|+.|.+++|++|.+.+.+ ++.|..|.++|=+-|+|+||+||||||||+||+|+|++.+.||+...|+++-..
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 3578999999999999999999988 899999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCc
Q 044198 536 WFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDP 615 (772)
Q Consensus 536 ~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~ 615 (772)
|||...+.||++|+.|++.+||||||||||++.++|... +....+..+||||.+|||+..+.+++||+|||.|+.||+
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~--~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS--DQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK 454 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc--HHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH
Confidence 999999999999999999999999999999999999764 233688999999999999999999999999999999999
Q ss_pred cccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 044198 616 ALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQ 695 (772)
Q Consensus 616 allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~ 695 (772)
||+||||||++|.+|.||...|.+||+.|+++.+++.++|+.-||+-|.|||||||.|+++.|+..|..+..
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga-------- 526 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGA-------- 526 (752)
T ss_pred HhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999988877654
Q ss_pred CCCCCCcccccccccHHHHHHHHhhC
Q 044198 696 RENPEGAAGEVAEIKKEHFEESMKYA 721 (772)
Q Consensus 696 ~~~~~~~~~~~~~i~~~~~~~al~~~ 721 (772)
..|+++|++-|-.++
T Consensus 527 -----------~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 527 -----------EMVTMKHLEFAKDRI 541 (752)
T ss_pred -----------ccccHHHHhhhhhhe
Confidence 269999999887664
No 16
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-47 Score=406.72 Aligned_cols=272 Identities=43% Similarity=0.741 Sum_probs=247.8
Q ss_pred ccccCCCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEec
Q 044198 177 REDEDRLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCING 256 (772)
Q Consensus 177 ~~~~~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~ 256 (772)
++....+++++|+||||+++...+|..++..|..+|++|+.+|+..|.|||||||||||||.||+++|++.+.+|+.|.|
T Consensus 499 REGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKG 578 (802)
T KOG0733|consen 499 REGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKG 578 (802)
T ss_pred cccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecC
Confidence 33334578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCC
Q 044198 257 PEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPN 336 (772)
Q Consensus 257 ~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~ 336 (772)
++++++|+|+++..++.+|+.|+...|||||+||+|+|++.|+........|+++||++.|||+.++.+|.||||||+|+
T Consensus 579 PELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD 658 (802)
T KOG0733|consen 579 PELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD 658 (802)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCc
Confidence 99999999999999999999999999999999999999999998888889999999999999999999999999999999
Q ss_pred CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhc--cCCcccccchhHHHHHhc--CCchhhHHHHHHHHHHHhhhhhc
Q 044198 337 SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTK--NMKLAEDVNLETVARETH--GFVGADLAALCTEGAMQCIREKM 412 (772)
Q Consensus 337 ~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~--~~~l~~~~~l~~la~~t~--g~~~~dl~~l~~~a~~~~~~~~~ 412 (772)
.+|||+.|||||++.++++.|+.++|.+||+.+++ +.++..+++++++|+.+. ||+|+||..||++|++.+++...
T Consensus 659 iIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~ 738 (802)
T KOG0733|consen 659 IIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESL 738 (802)
T ss_pred ccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 778999999999998876 99999999999999999998776
Q ss_pred cccccccchhhHhhhhhhhccchhhhhhhhhcCcccc
Q 044198 413 DLIDLEEDTIDAEVLSSMYVTNENLNAAVAITSPSAL 449 (772)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~ 449 (772)
..++...+...... ....++..||..|++.++|+..
T Consensus 739 ~~~~~~~~~~~~~~-~~~~~t~~hF~eA~~~i~pSv~ 774 (802)
T KOG0733|consen 739 FEIDSSEDDVTVRS-STIIVTYKHFEEAFQRIRPSVS 774 (802)
T ss_pred hhccccCcccceee-eeeeecHHHHHHHHHhcCCCcc
Confidence 54433332221111 1345788899999999998853
No 17
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-48 Score=379.19 Aligned_cols=249 Identities=39% Similarity=0.728 Sum_probs=233.6
Q ss_pred cccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch
Q 044198 454 VEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 533 (772)
Q Consensus 454 ~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~ 533 (772)
...|.-+|.||||++...+++++.++.|+.||+.|..+|+.||+|++|||+||||||.||+|+|+...+.|+++.+++++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCC-chhHHHHHHHHHhcCCCCCCcEEEEeecCCCCC
Q 044198 534 TMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGG-GVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDM 612 (772)
Q Consensus 534 ~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~-~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 612 (772)
.+|.|+..+.+|++|+.|...+|+|+||||||++..+|-++++..+ ...|.+-+||++|||+.++..|-||+|||+.+.
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~ 336 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 336 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc
Confidence 9999999999999999999999999999999999999966422211 156677789999999999999999999999999
Q ss_pred CCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044198 613 IDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIK 692 (772)
Q Consensus 613 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~ 692 (772)
|||||+||||+|+.|+||.||..+++.||+.+..++.+..+++++.+...-+.+|||||.++|.+|.++|+|+..-
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm---- 412 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRM---- 412 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHh----
Confidence 9999999999999999999999999999999999999999999999999889999999999999999999999763
Q ss_pred hccCCCCCCcccccccccHHHHHHHHhhC
Q 044198 693 KGQRENPEGAAGEVAEIKKEHFEESMKYA 721 (772)
Q Consensus 693 ~~~~~~~~~~~~~~~~i~~~~~~~al~~~ 721 (772)
.|+++||.+|.+++
T Consensus 413 ---------------~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 413 ---------------KVTMEDFKKAKEKV 426 (440)
T ss_pred ---------------hccHHHHHHHHHHH
Confidence 69999999998876
No 18
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-47 Score=412.51 Aligned_cols=252 Identities=46% Similarity=0.807 Sum_probs=240.5
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
..++++|+||||+++.+.+|++.+.+|++||+.|.++|+++|+|||||||||||||++|+++|++.+++|+.+.|+++++
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChh
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPA 341 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~a 341 (772)
+|+|++|..++.+|+.|++..|||+|+||||+++..|+...+++..|++++|++.|||+....+|+|||+||+|+.||+|
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~A 586 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPA 586 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHH
Confidence 99999999999999999999999999999999999998777788999999999999999999999999999999999999
Q ss_pred hhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccccch
Q 044198 342 LRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEEDT 421 (772)
Q Consensus 342 l~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~ 421 (772)
+.||||||+.|++++||.+.|++||+.+++++++.+++|++.+|..|+||+|+||..+|++|+..++++..+
T Consensus 587 LlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~-------- 658 (693)
T KOG0730|consen 587 LLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE-------- 658 (693)
T ss_pred HcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999887543
Q ss_pred hhHhhhhhhhccchhhhhhhhhcCccc
Q 044198 422 IDAEVLSSMYVTNENLNAAVAITSPSA 448 (772)
Q Consensus 422 ~~~~~~~~~~v~~~d~~~al~~~~ps~ 448 (772)
...++.+||.+++...+++.
T Consensus 659 -------a~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 659 -------ATEITWQHFEEALKAVRPSL 678 (693)
T ss_pred -------cccccHHHHHHHHHhhcccC
Confidence 34577889999999887764
No 19
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-46 Score=366.01 Aligned_cols=251 Identities=39% Similarity=0.696 Sum_probs=235.6
Q ss_pred hhcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEeccc
Q 044198 452 IAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 531 (772)
Q Consensus 452 ~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~ 531 (772)
...+.|.++++|+||..+..+.+++.++.|+.+++.|.++|+.||+|+|+|||||||||.+|+|+|+..+.-|+.|-+++
T Consensus 167 ~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigse 246 (435)
T KOG0729|consen 167 QVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSE 246 (435)
T ss_pred EeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCC-CCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCC
Q 044198 532 LLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSV-GDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRP 610 (772)
Q Consensus 532 l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~-~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 610 (772)
++.+|+|+..+.+|++|+.|+....|||||||||++.+.|-.++ +......|..-+|+++|||+.+..++-|++|||+|
T Consensus 247 lvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrp 326 (435)
T KOG0729|consen 247 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRP 326 (435)
T ss_pred HHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCC
Confidence 99999999999999999999999999999999999999986542 22223677788899999999999999999999999
Q ss_pred CCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044198 611 DMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKD 690 (772)
Q Consensus 611 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~ 690 (772)
+.|||||+||||+|+.++|.+||.+.|..||+.+.+.+.+..++.++.||+.+.+-+|+||+.+|.+|.+.|++....
T Consensus 327 dtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk-- 404 (435)
T KOG0729|consen 327 DTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRK-- 404 (435)
T ss_pred CCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhh--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred hhhccCCCCCCcccccccccHHHHHHHHhhC
Q 044198 691 IKKGQRENPEGAAGEVAEIKKEHFEESMKYA 721 (772)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~ 721 (772)
..|..||.+|+.++
T Consensus 405 -----------------~atekdfl~av~kv 418 (435)
T KOG0729|consen 405 -----------------VATEKDFLDAVNKV 418 (435)
T ss_pred -----------------hhhHHHHHHHHHHH
Confidence 47999999999876
No 20
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-46 Score=365.04 Aligned_cols=251 Identities=42% Similarity=0.726 Sum_probs=235.3
Q ss_pred cccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch
Q 044198 454 VEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 533 (772)
Q Consensus 454 ~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~ 533 (772)
.+.|.-.|+||||++...++|.+.+..|+.|++.|.++|++||+|+|+|||||||||++|+|.|...+..|+.+-++.++
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCc-hhHHHHHHHHHhcCCCCCCcEEEEeecCCCCC
Q 044198 534 TMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGG-VDRIVNQLLTEMDGLSAKKTVFVIGATNRPDM 612 (772)
Q Consensus 534 ~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~-~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 612 (772)
.+|+|+..+.+|..|..|+..+|+||||||+|++..+|-.+...... ..|..-+||++|||+.+..++-||+||||.+.
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi 322 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI 322 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc
Confidence 99999999999999999999999999999999999999765222221 56777889999999999999999999999999
Q ss_pred CCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044198 613 IDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIK 692 (772)
Q Consensus 613 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~ 692 (772)
||||++|.||+|+.|+||.|+++.|..|++.+.+++.+.+|+++++||+.|++|+|+++.++|-+|++.|+++...
T Consensus 323 LDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~at---- 398 (424)
T KOG0652|consen 323 LDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGAT---- 398 (424)
T ss_pred cCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998652
Q ss_pred hccCCCCCCcccccccccHHHHHHHHhhCCC
Q 044198 693 KGQRENPEGAAGEVAEIKKEHFEESMKYARR 723 (772)
Q Consensus 693 ~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~ 723 (772)
.|+.+||.+++.+++.
T Consensus 399 ---------------ev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 399 ---------------EVTHEDFMEGILEVQA 414 (424)
T ss_pred ---------------cccHHHHHHHHHHHHH
Confidence 5999999999987643
No 21
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-44 Score=368.63 Aligned_cols=280 Identities=38% Similarity=0.636 Sum_probs=244.6
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcC-CCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhc
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFG-MSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 535 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~-~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~ 535 (772)
-.++|+||+|++.+++++++.+..|+++++.|...+ ++|++|+|||||||||||++|+++|++.+.+|+.|.++.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 358999999999999999999999999999997544 5789999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCc--EEEEeecCCCCCC
Q 044198 536 WFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKT--VFVIGATNRPDMI 613 (772)
Q Consensus 536 ~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~--v~vi~aTn~~~~l 613 (772)
|.|++++.++.+|..|.+..||||||||+|++++.|+. ++++.+..+.++|...-||+..+.+ |+|+||||||..|
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s--~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~Dl 244 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRS--TDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDL 244 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhccc--chHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccH
Confidence 99999999999999999999999999999999999943 5777799999999999999976554 9999999999999
Q ss_pred CccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 044198 614 DPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKK 693 (772)
Q Consensus 614 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 693 (772)
|+|++| |+.++++|++|+.++|.+|++..+++-++++++|+.++|..|+||||+||.++|+.|+..++++.+... ..
T Consensus 245 DeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~-~~ 321 (386)
T KOG0737|consen 245 DEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSE-TG 321 (386)
T ss_pred HHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhc-cc
Confidence 999999 999999999999999999999999999999999999999999999999999999999999999998764 11
Q ss_pred ccC--------CCCCCccc--ccccccHHHHHHHHhhCCCCCCHHH--HHHHHHHHHHHh
Q 044198 694 GQR--------ENPEGAAG--EVAEIKKEHFEESMKYARRSVSDSD--VRKYQAFANTLQ 741 (772)
Q Consensus 694 ~~~--------~~~~~~~~--~~~~i~~~~~~~al~~~~~s~~~~~--~~~y~~~~~~~~ 741 (772)
... ...+.... ...+++++||..+...+.+|++.+. ....+.|.+.++
T Consensus 322 ~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~ 381 (386)
T KOG0737|consen 322 LLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYG 381 (386)
T ss_pred chhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhc
Confidence 000 00000011 1368999999999998877655432 334455666553
No 22
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-44 Score=403.48 Aligned_cols=247 Identities=43% Similarity=0.771 Sum_probs=230.6
Q ss_pred ccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchh
Q 044198 455 EVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 534 (772)
Q Consensus 455 ~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~ 534 (772)
....+.|.|+.|.+++|++|.+.+.+ +++|+.|.++|...|+|+||+||||||||+||||+|++.+.||++++++|++.
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 34568999999999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCC-CC-CCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCC
Q 044198 535 MWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGS-SV-GDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDM 612 (772)
Q Consensus 535 ~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~-~~-~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 612 (772)
.++|.....++.+|..|+..+|||+|+||||+++..|+. .. +.+...+..+||||.+|||+....+|+|+|+||+|+.
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 999999999999999999999999999999999999952 11 2333467899999999999999999999999999999
Q ss_pred CCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 044198 613 IDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDI 691 (772)
Q Consensus 613 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~ 691 (772)
||+|++||||||++|++++||...|.+||+.|+++.+++ +++|+..+|..|.||||+||.++|++|+..|.++...
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~--- 539 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLR--- 539 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccC---
Confidence 999999999999999999999999999999999999996 8899999999999999999999999999999998652
Q ss_pred hhccCCCCCCcccccccccHHHHHHHHhhC
Q 044198 692 KKGQRENPEGAAGEVAEIKKEHFEESMKYA 721 (772)
Q Consensus 692 ~~~~~~~~~~~~~~~~~i~~~~~~~al~~~ 721 (772)
.|+..||+.|++.+
T Consensus 540 ----------------~i~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 540 ----------------EIGTKDLEYAIERV 553 (774)
T ss_pred ----------------ccchhhHHHHHHHH
Confidence 69999999999844
No 23
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=386.52 Aligned_cols=252 Identities=45% Similarity=0.744 Sum_probs=234.2
Q ss_pred cccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch
Q 044198 454 VEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 533 (772)
Q Consensus 454 ~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~ 533 (772)
.+.|.++|+||+|++.+++.+.+.+.+|+.+++.|.++|+.+++|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCC-CCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCC
Q 044198 534 TMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGD-GGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDM 612 (772)
Q Consensus 534 ~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~-~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 612 (772)
.+|+|++++.++.+|..|+...|+||||||+|+++.+|...... .....+++.+||++||++....+++||+|||+|+.
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 99999999999999999999999999999999999887543211 12256889999999999988889999999999999
Q ss_pred CCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044198 613 IDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIK 692 (772)
Q Consensus 613 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~ 692 (772)
||||++||||||+.|+|++|+.++|..||+.+++++++..++|+..+|+.|+||||+||.++|++|++.|+++..
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~----- 371 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR----- 371 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred hccCCCCCCcccccccccHHHHHHHHhhCCCC
Q 044198 693 KGQRENPEGAAGEVAEIKKEHFEESMKYARRS 724 (772)
Q Consensus 693 ~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s 724 (772)
..|+.+||++|+.++...
T Consensus 372 --------------~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 372 --------------YVILPKDFEKGYKTVVRK 389 (398)
T ss_pred --------------CccCHHHHHHHHHHHHhc
Confidence 269999999999997554
No 24
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-43 Score=387.56 Aligned_cols=269 Identities=42% Similarity=0.725 Sum_probs=241.2
Q ss_pred CCCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q 044198 181 DRLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIM 260 (772)
Q Consensus 181 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~ 260 (772)
+++++++|+||||+++.|.+|.+.+.+|+.||++|.+ |+.+..|||||||||||||.+|+|+|.++...|+.|.|++++
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 4678999999999999999999999999999999965 888899999999999999999999999999999999999999
Q ss_pred hhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCC--chhhHHHHHHHHHHHhhccc--ccCceEEEEeeCCCC
Q 044198 261 SKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKT--HGEVEKRIVSQLLTLMDGMK--SRAHVMVIGATNRPN 336 (772)
Q Consensus 261 ~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~--~~~~~~~v~~~L~~lld~~~--~~~~v~vI~atn~~~ 336 (772)
++|+|++|+++|.+|+.|+...|||||+||+|+++|+|+.. ++.+.+|+++||+..||++. ....|.||||||+|+
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 99999999999999999999999999999999999999764 45678999999999999998 456799999999999
Q ss_pred CCChhhhccCCceeEEEeCCC-CHHHHHHHHHHHhccCCcccccchhHHHHHhc-CCchhhHHHHHHHHHHHhhhhhccc
Q 044198 337 SIDPALRRSGRFDKEIDIGVP-DEVGRLEVLRIHTKNMKLAEDVNLETVARETH-GFVGADLAALCTEGAMQCIREKMDL 414 (772)
Q Consensus 337 ~ld~al~r~gRf~~~i~i~~p-~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~-g~~~~dl~~l~~~a~~~~~~~~~~~ 414 (772)
.|||+|.||||||+.++++++ |.+.+..+|++.++++.+.+++++.++|+.++ .|+|+|+.++|..|.+.++++....
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ 902 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHD 902 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988 56778999999999999999999999998875 7999999999999999999987654
Q ss_pred cccccchhhHhhhhhhhccchhhhhhhhhcCcccch
Q 044198 415 IDLEEDTIDAEVLSSMYVTNENLNAAVAITSPSALR 450 (772)
Q Consensus 415 ~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~ 450 (772)
++...............++++||.++..+..|+...
T Consensus 903 ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~ 938 (953)
T KOG0736|consen 903 IESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSE 938 (953)
T ss_pred hhhccccccccCCceEEEEHHHHHHHHHhcCCcccH
Confidence 432211111122346789999999999999988543
No 25
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=9e-44 Score=345.61 Aligned_cols=245 Identities=38% Similarity=0.702 Sum_probs=222.0
Q ss_pred cccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch
Q 044198 454 VEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 533 (772)
Q Consensus 454 ~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~ 533 (772)
...++++++|++|++++|+..+-.+.+ ++.|+.|.++ .|+++|||||||||||++|+++|++.+.|++.+++++++
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li 188 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI 188 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHH
Confidence 345788999999999999987766655 7788887664 588999999999999999999999999999999999999
Q ss_pred hcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCC
Q 044198 534 TMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMI 613 (772)
Q Consensus 534 ~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l 613 (772)
+.|||+..+.|+++|++|++.+|||+||||+|+++-.|.-. .-.|....++|.||++|||+.++.+|+.|||||+|+.|
T Consensus 189 GehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ-elRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L 267 (368)
T COG1223 189 GEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ-ELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELL 267 (368)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH-HhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhc
Confidence 99999999999999999999999999999999999887543 22344788999999999999999999999999999999
Q ss_pred CccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHH-HHHHHHHHHHHHHHHHhhh
Q 044198 614 DPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITE-ICQRACKCAIREEIEKDIK 692 (772)
Q Consensus 614 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~-l~~~a~~~a~~~~~~~~~~ 692 (772)
|||+.+ ||...|+|.+|+.++|..|++.+++++|+.-+.++..+++.|.|+||+||.. +++.|...|+.+..+
T Consensus 268 D~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e---- 341 (368)
T COG1223 268 DPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDRE---- 341 (368)
T ss_pred CHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchh----
Confidence 999998 9999999999999999999999999999999999999999999999999998 777777788877653
Q ss_pred hccCCCCCCcccccccccHHHHHHHHhhCCCC
Q 044198 693 KGQRENPEGAAGEVAEIKKEHFEESMKYARRS 724 (772)
Q Consensus 693 ~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s 724 (772)
.|+.+||+.|+++-+++
T Consensus 342 ---------------~v~~edie~al~k~r~~ 358 (368)
T COG1223 342 ---------------KVEREDIEKALKKERKR 358 (368)
T ss_pred ---------------hhhHHHHHHHHHhhccc
Confidence 59999999999976554
No 26
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-43 Score=367.95 Aligned_cols=278 Identities=37% Similarity=0.645 Sum_probs=241.6
Q ss_pred cccCCccccc--ccchHH-HHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc-EEEEec
Q 044198 454 VEVPNVRWAD--IGGLDT-VKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN-FISIKG 529 (772)
Q Consensus 454 ~~~~~v~~~~--i~g~~~-~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~-~i~v~~ 529 (772)
+-.|+..|++ |||++. .-+..++++...+..|+..+++|+++-+|+|||||||||||.+|+.+.++++.. --.|+|
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 4457777776 567764 344567777777888999999999999999999999999999999999999753 356899
Q ss_pred ccchhcccccchHHHHHHHHHHHhC--------CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcE
Q 044198 530 PELLTMWFGESEANVRDVFDKARQS--------APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTV 601 (772)
Q Consensus 530 ~~l~~~~vg~se~~i~~vf~~a~~~--------~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v 601 (772)
++++++|||+||.++|.+|..|.+. .--||+|||||+++.+||+..++.+.++.++||||.-|||++..+++
T Consensus 291 PeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNI 370 (744)
T KOG0741|consen 291 PEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNI 370 (744)
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcE
Confidence 9999999999999999999988642 34699999999999999998777888999999999999999999999
Q ss_pred EEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccC----CCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 044198 602 FVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKS----PVSKDIDLKAIAKYTHGFSGADITEICQR 677 (772)
Q Consensus 602 ~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~----~~~~~~~~~~la~~~~g~sg~di~~l~~~ 677 (772)
+||+.|||+|+||+||||||||...+++.+||++.|.+|++.+.++| .++.|+|+.+||+.|.+||||+|..+++.
T Consensus 371 LVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 371 LVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred EEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999876 46689999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCCC--CCHHHHHHHHH
Q 044198 678 ACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRS--VSDSDVRKYQA 735 (772)
Q Consensus 678 a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s--~~~~~~~~y~~ 735 (772)
|...|+.+.+..... ........+...|+++||..||.+++|. +++++++.|..
T Consensus 451 A~S~A~nR~vk~~~~----~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~ 506 (744)
T KOG0741|consen 451 AQSFAMNRHVKAGGK----VEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVM 506 (744)
T ss_pred HHHHHHHhhhccCcc----eecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHh
Confidence 999999998865411 1111123344589999999999999996 78888888764
No 27
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1e-41 Score=374.48 Aligned_cols=257 Identities=46% Similarity=0.807 Sum_probs=236.7
Q ss_pred hcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccc
Q 044198 453 AVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 532 (772)
Q Consensus 453 ~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l 532 (772)
..+.|.+.|++|+|++..++.+.+.+.+|+.+++.|+.+|+.+++++|||||||||||++|+++|++++.+|+.++++++
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCC-CchhHHHHHHHHHhcCCCCCCcEEEEeecCCCC
Q 044198 533 LTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDG-GGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPD 611 (772)
Q Consensus 533 ~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~-~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 611 (772)
.++|+|++++.++.+|+.|+...|+||||||+|.+++.|+...... ....+.+.++|.+++++....+++||+|||+++
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~ 281 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID 281 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh
Confidence 9999999999999999999999999999999999998886542221 125677888999999998888999999999999
Q ss_pred CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 044198 612 MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDI 691 (772)
Q Consensus 612 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~ 691 (772)
.+|++++||||||+.|+||+|+.++|.+||+.+++++++..++++..+|+.|+||||+||+++|++|++.|+++..
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~---- 357 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDR---- 357 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC----
Confidence 9999999999999999999999999999999999999998889999999999999999999999999999988742
Q ss_pred hhccCCCCCCcccccccccHHHHHHHHhhCCCCCCHH
Q 044198 692 KKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDS 728 (772)
Q Consensus 692 ~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~~ 728 (772)
..|+.+||.+|+.+++++...+
T Consensus 358 ---------------~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 358 ---------------TEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred ---------------CCcCHHHHHHHHHHHhcccccc
Confidence 2599999999999998865543
No 28
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-42 Score=382.08 Aligned_cols=246 Identities=43% Similarity=0.784 Sum_probs=231.7
Q ss_pred cCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhc
Q 044198 456 VPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 535 (772)
Q Consensus 456 ~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~ 535 (772)
...++|.|+.|.+++|+++.+.+.+ ++.|..|..+|...|+|+||+||||||||+||+++|.+.+.||+++++++++.+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 5678999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCC-CCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCC
Q 044198 536 WFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVG-DGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMID 614 (772)
Q Consensus 536 ~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~-~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 614 (772)
|||-....+|++|..|++.+|||+||||||++...|+.+.+ .+..-+..+||||.+|||+..+..|+||++||||+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999976522 22235569999999999999999999999999999999
Q ss_pred ccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044198 615 PALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKG 694 (772)
Q Consensus 615 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~ 694 (772)
|||+||||||+.|.++.||...|.+|++.|+++.+++.++|+..+|+.|.||||+|+.+++.+|+..|.+++..
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~------ 376 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKK------ 376 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCe------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998652
Q ss_pred cCCCCCCcccccccccHHHHHHHHhhC
Q 044198 695 QRENPEGAAGEVAEIKKEHFEESMKYA 721 (772)
Q Consensus 695 ~~~~~~~~~~~~~~i~~~~~~~al~~~ 721 (772)
.|++.||++|+.++
T Consensus 377 -------------~i~~~~i~ea~drv 390 (596)
T COG0465 377 -------------EITMRDIEEAIDRV 390 (596)
T ss_pred -------------eEeccchHHHHHHH
Confidence 69999999999875
No 29
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-41 Score=327.19 Aligned_cols=273 Identities=39% Similarity=0.694 Sum_probs=238.9
Q ss_pred cCCceEEeCCCceEEecCCCCc------ccccCCCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEE
Q 044198 155 EPGEYCHITPKTEIFCEGEPLK------REDEDRLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILL 228 (772)
Q Consensus 155 ~~~~~~~~~~~t~i~~~~~~~~------~~~~~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL 228 (772)
.|++.+-+..++.+.++.-|.. ....+.-+...|+||||+++|++++.+++.+|+.|++.|+.+|+.||+|+|+
T Consensus 131 kPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLm 210 (424)
T KOG0652|consen 131 KPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLM 210 (424)
T ss_pred CCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEe
Confidence 4667777778888777544421 1112334667899999999999999999999999999999999999999999
Q ss_pred ECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhH--
Q 044198 229 HGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVE-- 306 (772)
Q Consensus 229 ~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~-- 306 (772)
|||||||||++||+.|...+..|+.+-|+++...|.|+..+.++..|..|+...|+||||||+|.+..++..+...-.
T Consensus 211 YGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDRE 290 (424)
T KOG0652|consen 211 YGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDRE 290 (424)
T ss_pred eCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988754432222
Q ss_pred -HHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHH
Q 044198 307 -KRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVA 385 (772)
Q Consensus 307 -~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la 385 (772)
+|..-.|++.+||+.+...|-||++||+.+-|||++.|+||+++.|+||.|+++.|.+|+++|.++|.+.++++++++|
T Consensus 291 VQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELa 370 (424)
T KOG0652|consen 291 VQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELA 370 (424)
T ss_pred HHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHh
Confidence 3334456777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCchhhHHHHHHHHHHHhhhhhccccccccchhhHhhhhhhhccchhhhhhhhhc
Q 044198 386 RETHGFVGADLAALCTEGAMQCIREKMDLIDLEEDTIDAEVLSSMYVTNENLNAAVAIT 444 (772)
Q Consensus 386 ~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~ 444 (772)
+.|++|.|++..++|.+|.+.++++... .++.+||..++.++
T Consensus 371 RsTddFNGAQcKAVcVEAGMiALRr~at-----------------ev~heDfmegI~eV 412 (424)
T KOG0652|consen 371 RSTDDFNGAQCKAVCVEAGMIALRRGAT-----------------EVTHEDFMEGILEV 412 (424)
T ss_pred hcccccCchhheeeehhhhHHHHhcccc-----------------cccHHHHHHHHHHH
Confidence 9999999999999999999999987532 35667777766554
No 30
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-41 Score=326.19 Aligned_cols=246 Identities=43% Similarity=0.726 Sum_probs=227.4
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
.-++++|.||||++-|+++|++.+++|+.+.++++++|+.||+|||+|||||||||+|++++|+...+.|+.+.|+++..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCch---hhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCC
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHG---EVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSI 338 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~l 338 (772)
+|.|+....++.+|..|+.+.|+|+||||+|+++.++-.... ..-+|++-.|++.|||+.+..+|-||.+||+.+.|
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 999999999999999999999999999999999987754332 23357777889999999999999999999999999
Q ss_pred ChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccc
Q 044198 339 DPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLE 418 (772)
Q Consensus 339 d~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 418 (772)
||++.||||+++.|+||.||..++.-++...+.+|.+.+++|++.+..+.+..+++||.++|++|.+.+++...
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nr------ 381 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENR------ 381 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred cchhhHhhhhhhhccchhhhhhhhhc
Q 044198 419 EDTIDAEVLSSMYVTNENLNAAVAIT 444 (772)
Q Consensus 419 ~~~~~~~~~~~~~v~~~d~~~al~~~ 444 (772)
..+...||+++....
T Consensus 382 -----------yvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 382 -----------YVVLQKDFEKAYKTV 396 (408)
T ss_pred -----------eeeeHHHHHHHHHhh
Confidence 345667887776654
No 31
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-41 Score=325.55 Aligned_cols=247 Identities=45% Similarity=0.795 Sum_probs=227.1
Q ss_pred CCCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q 044198 181 DRLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIM 260 (772)
Q Consensus 181 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~ 260 (772)
+++++-+|+-+||+++|+++|++.+++|..||++|+.+|+..|+|+|||||||||||.||+++|....+.|+.++|+++.
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchh---hHHHHHHHHHHHhhcccccCceEEEEeeCCCCC
Q 044198 261 SKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGE---VEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNS 337 (772)
Q Consensus 261 ~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~---~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ 337 (772)
.+|.|+....++++|--|+.+.|+|+|+||||++...+..+++. .-+|..-.|++.+||+....++-||.+||+.+-
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi 298 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 298 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc
Confidence 99999999999999999999999999999999998876543322 223444457778899999999999999999999
Q ss_pred CChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhcccccc
Q 044198 338 IDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDL 417 (772)
Q Consensus 338 ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 417 (772)
|||++.||||+++.|+||+|+++.|.+||++|.++|.+...+++..+|....|.+|+++..+|.+|.+.+++.+
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------ 372 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------ 372 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred ccchhhHhhhhhhhccchhhhhhhhhc
Q 044198 418 EEDTIDAEVLSSMYVTNENLNAAVAIT 444 (772)
Q Consensus 418 ~~~~~~~~~~~~~~v~~~d~~~al~~~ 444 (772)
...++++||+-|..++
T Consensus 373 -----------rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 373 -----------RVHVTQEDFEMAVAKV 388 (404)
T ss_pred -----------hccccHHHHHHHHHHH
Confidence 4568899998887654
No 32
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-41 Score=362.80 Aligned_cols=282 Identities=38% Similarity=0.648 Sum_probs=253.1
Q ss_pred hhhhcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEec
Q 044198 450 REIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKG 529 (772)
Q Consensus 450 ~~~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~ 529 (772)
.++....+++.|+|+.|++.+|+.+.+.+.||+.+++.|..+ ..+.+++||.||||+|||+|++|+|.+++..|+.+++
T Consensus 141 ~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSa 219 (428)
T KOG0740|consen 141 NEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISA 219 (428)
T ss_pred HHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccH
Confidence 345566788999999999999999999999999999999864 4567899999999999999999999999999999999
Q ss_pred ccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC--CCCcEEEEeec
Q 044198 530 PELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS--AKKTVFVIGAT 607 (772)
Q Consensus 530 ~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~--~~~~v~vi~aT 607 (772)
+.|.++|+|++++.++.+|+-|+...|+|+||||+|+++.+|.. .++....|+..++|.++++.. ..++|+||+||
T Consensus 220 ssLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~--~e~e~srr~ktefLiq~~~~~s~~~drvlvigaT 297 (428)
T KOG0740|consen 220 SSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD--NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGAT 297 (428)
T ss_pred HHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC--cccccchhhhhHHHhhhccccCCCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999954 456668899999999999984 45689999999
Q ss_pred CCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 044198 608 NRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREE 686 (772)
Q Consensus 608 n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~ 686 (772)
|+||.+|+|++| ||.+++|+|+||.++|..+|+..+.+.+.. .+.|++.|++.|+||||.||.++|++|++..+++.
T Consensus 298 N~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~ 375 (428)
T KOG0740|consen 298 NRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLREL 375 (428)
T ss_pred CCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhc
Confidence 999999999999 999999999999999999999999887444 56899999999999999999999999999988876
Q ss_pred HHH-hhhhccCCCCCCcccccccccHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhc
Q 044198 687 IEK-DIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSDVRKYQAFANTLQQS 743 (772)
Q Consensus 687 ~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~~~~~~y~~~~~~~~~~ 743 (772)
... .++. ..++..++++..||+.+++.++|+++.+.+++|++|..+|+..
T Consensus 376 ~~~~~~~~-------~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~ 426 (428)
T KOG0740|consen 376 GGTTDLEF-------IDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGSS 426 (428)
T ss_pred ccchhhhh-------cchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhccc
Confidence 542 1111 1234567899999999999999999999999999999998653
No 33
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=3.7e-41 Score=369.24 Aligned_cols=249 Identities=39% Similarity=0.725 Sum_probs=231.0
Q ss_pred cccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch
Q 044198 454 VEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 533 (772)
Q Consensus 454 ~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~ 533 (772)
.+.|.++|+||+|++..++.+.+.+.+++.+++.|+.+|+.++.++|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCC-CchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCC
Q 044198 534 TMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDG-GGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDM 612 (772)
Q Consensus 534 ~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~-~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 612 (772)
++|+|++++.++.+|+.|+...||||||||||+++.+|....... ....+.+.+||++||++....++.||+|||+++.
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES 334 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH
Confidence 999999999999999999999999999999999998876432111 1246778899999999988889999999999999
Q ss_pred CCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044198 613 IDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIK 692 (772)
Q Consensus 613 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~ 692 (772)
||++++||||||+.|+|++||.++|.+||+.+++++.+..+++++.++..++||||+||+++|++|++.|+++..
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r----- 409 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR----- 409 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred hccCCCCCCcccccccccHHHHHHHHhhC
Q 044198 693 KGQRENPEGAAGEVAEIKKEHFEESMKYA 721 (772)
Q Consensus 693 ~~~~~~~~~~~~~~~~i~~~~~~~al~~~ 721 (772)
..|+.+||.+|+.++
T Consensus 410 --------------~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 410 --------------MKVTQADFRKAKEKV 424 (438)
T ss_pred --------------CccCHHHHHHHHHHH
Confidence 259999999999986
No 34
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-41 Score=333.00 Aligned_cols=247 Identities=46% Similarity=0.773 Sum_probs=227.9
Q ss_pred CCCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q 044198 181 DRLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIM 260 (772)
Q Consensus 181 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~ 260 (772)
++.+..+|.||||++.|+++|++.+++|+.||++++.+|+.||+||+|||+||||||.||+++|+...+.|+.+-|+++.
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHH---HHHHHhhcccccCceEEEEeeCCCCC
Q 044198 261 SKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVS---QLLTLMDGMKSRAHVMVIGATNRPNS 337 (772)
Q Consensus 261 ~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~---~L~~lld~~~~~~~v~vI~atn~~~~ 337 (772)
.+|.|+..+.++++|+-|..+.|+|+||||||++..++....+.-++.+.. .|++.+||+..+..|-||.|||+.+.
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~ 336 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 336 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc
Confidence 999999999999999999999999999999999999887655544444433 46677889999999999999999999
Q ss_pred CChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhcccccc
Q 044198 338 IDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDL 417 (772)
Q Consensus 338 ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 417 (772)
|||+|.||||+++.|+|+.||+..+..|+++|+.+|.+..+++++.+....+.++|+||.++|.+|.+.+++..
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer------ 410 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER------ 410 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888764
Q ss_pred ccchhhHhhhhhhhccchhhhhhhhhc
Q 044198 418 EEDTIDAEVLSSMYVTNENLNAAVAIT 444 (772)
Q Consensus 418 ~~~~~~~~~~~~~~v~~~d~~~al~~~ 444 (772)
...++.+||.++...+
T Consensus 411 -----------Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 411 -----------RMKVTMEDFKKAKEKV 426 (440)
T ss_pred -----------HhhccHHHHHHHHHHH
Confidence 4568889998887654
No 35
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-40 Score=351.50 Aligned_cols=244 Identities=43% Similarity=0.695 Sum_probs=227.1
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSK 262 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~ 262 (772)
..+++|+|+-|+++++++|.+++++ ++.|+-|..+|-+-|+||||+||||||||+|||++|++.+.+|++..|+++-..
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 3578999999999999999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhh
Q 044198 263 MAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPAL 342 (772)
Q Consensus 263 ~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al 342 (772)
++|....+++.+|+.|+.+.||||||||||++..+|........+..++||+..|||+.++..|+|||+||.|+.||++|
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL 456 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKAL 456 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHh
Confidence 99999999999999999999999999999999998876655577889999999999999999999999999999999999
Q ss_pred hccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccccchh
Q 044198 343 RRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEEDTI 422 (772)
Q Consensus 343 ~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~ 422 (772)
.||||||++|.+|.||...|.+||+.|+.++.+..++|+.-+|+-|.||+|+|+..+++.|+..+....
T Consensus 457 ~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg----------- 525 (752)
T KOG0734|consen 457 TRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG----------- 525 (752)
T ss_pred cCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC-----------
Confidence 999999999999999999999999999999999999999999999999999999999999998776543
Q ss_pred hHhhhhhhhccchhhhhhhhhc
Q 044198 423 DAEVLSSMYVTNENLNAAVAIT 444 (772)
Q Consensus 423 ~~~~~~~~~v~~~d~~~al~~~ 444 (772)
...+++.+++.|-..+
T Consensus 526 ------a~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 526 ------AEMVTMKHLEFAKDRI 541 (752)
T ss_pred ------cccccHHHHhhhhhhe
Confidence 2346667776665544
No 36
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-39 Score=333.81 Aligned_cols=263 Identities=40% Similarity=0.641 Sum_probs=234.8
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSK 262 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~ 262 (772)
-+.+.|+||.|++++++-|++++.+|+..|++|+++ ..|=+|||++||||||||+||+++|.+++..|+.|+.+.+.++
T Consensus 206 np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 206 NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK 284 (491)
T ss_pred CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh
Confidence 367999999999999999999999999999999974 4666899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCc-hhhHHHHHHHHHHHhhccccc----CceEEEEeeCCCCC
Q 044198 263 MAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTH-GEVEKRIVSQLLTLMDGMKSR----AHVMVIGATNRPNS 337 (772)
Q Consensus 263 ~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~-~~~~~~v~~~L~~lld~~~~~----~~v~vI~atn~~~~ 337 (772)
|.|++++.++-+|+.|+-..|++|||||||.|+.+++... .+..+|+.+.|+-.|||.... ..|.|+|+||-|.+
T Consensus 285 wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWd 364 (491)
T KOG0738|consen 285 WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWD 364 (491)
T ss_pred hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcc
Confidence 9999999999999999999999999999999999887653 467889999999999997643 23899999999999
Q ss_pred CChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhcccccc
Q 044198 338 IDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDL 417 (772)
Q Consensus 338 ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 417 (772)
||+||+| ||.+.|+||.|+.+.|..+++..++...+.++++++.+++.++||+|+||..+|++|++.++++....+.-
T Consensus 365 iDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~ 442 (491)
T KOG0738|consen 365 IDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTP 442 (491)
T ss_pred hHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999977554332
Q ss_pred ccc-hhhHhhhhhhhccchhhhhhhhhcCcccc
Q 044198 418 EED-TIDAEVLSSMYVTNENLNAAVAITSPSAL 449 (772)
Q Consensus 418 ~~~-~~~~~~~~~~~v~~~d~~~al~~~~ps~~ 449 (772)
.+. ....+... ..++.+||+.|+..+.|+..
T Consensus 443 ~ei~~lakE~~~-~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 443 REIRQLAKEEPK-MPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHhhhhhhhccc-cccchhhHHHHHHHcCcCCC
Confidence 221 11222222 55899999999999999865
No 37
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=4.8e-39 Score=312.70 Aligned_cols=304 Identities=34% Similarity=0.572 Sum_probs=258.5
Q ss_pred hhhHHHHHHHhhhcCCcCccCCcEEEEecCceeEEEEEEEecCCceEEeCCCceEEecCCCCcccccCCCCCCccccccC
Q 044198 114 GNLFDVYLKPYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGEYCHITPKTEIFCEGEPLKREDEDRLDDVGYEDVGG 193 (772)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~i~G 193 (772)
.++|..|.++.|. +..+..|+.+.-.+......|+|+++.|.+.++++..|.+... .+.... ....++++++|+.|
T Consensus 50 ~~~F~~YArdQW~--Ge~v~eg~ylFD~~~~pdyAfkvI~~~P~~~~i~~st~i~vl~-~~~~~~-~e~~~~it~ddViG 125 (368)
T COG1223 50 PEVFNIYARDQWL--GEVVREGDYLFDTRMFPDYAFKVIRVVPSGGGIITSTTIFVLE-TPREED-REIISDITLDDVIG 125 (368)
T ss_pred HHHHHHHHHHhhc--ceeeecCceEeecccccccceeEEEEeCCCCceecceEEEEec-Ccchhh-hhhhccccHhhhhc
Confidence 3578889999887 6678999987655555667899999999888887766655543 332111 23457899999999
Q ss_pred cHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHH
Q 044198 194 VRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLRE 273 (772)
Q Consensus 194 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~~g~~~~~l~~ 273 (772)
+++++.+.+-++++ +..|+.|..+ .|++||+|||||||||++|+++|++.+.+++.++..++.+.++|+...+++.
T Consensus 126 qEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihe 201 (368)
T COG1223 126 QEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHE 201 (368)
T ss_pred hHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHH
Confidence 99999998888877 8888888765 5899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCceEEeccccccccCCCCC--chhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeE
Q 044198 274 AFNVAEKNAPSIIFIDEIDSIAPKREKT--HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKE 351 (772)
Q Consensus 274 ~f~~a~~~~p~il~iDEid~l~~~~~~~--~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~ 351 (772)
+++.|+...|||+||||+|+++-.+... .+++ ..++++|++.|||+.++..|+.|++||+++.|||++|+ ||..+
T Consensus 202 ly~rA~~~aPcivFiDE~DAiaLdRryQelRGDV-sEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeE 278 (368)
T COG1223 202 LYERARKAAPCIVFIDELDAIALDRRYQELRGDV-SEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEE 278 (368)
T ss_pred HHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccH-HHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhhe
Confidence 9999999999999999999998776533 1222 46789999999999999999999999999999999999 99999
Q ss_pred EEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHH-HHHHHHHHhhhhhccccccccchhhHhhhhhh
Q 044198 352 IDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAA-LCTEGAMQCIREKMDLIDLEEDTIDAEVLSSM 430 (772)
Q Consensus 352 i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~-l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (772)
|+|..|+.++|++|++.+.+.+++.-+.+++.++..|.||+|+||.. +++.|..+++... .-
T Consensus 279 IEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed-----------------~e 341 (368)
T COG1223 279 IEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED-----------------RE 341 (368)
T ss_pred eeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc-----------------hh
Confidence 99999999999999999999999999999999999999999999864 4556666666543 23
Q ss_pred hccchhhhhhhhhcC
Q 044198 431 YVTNENLNAAVAITS 445 (772)
Q Consensus 431 ~v~~~d~~~al~~~~ 445 (772)
.++.+|+..|+.+..
T Consensus 342 ~v~~edie~al~k~r 356 (368)
T COG1223 342 KVEREDIEKALKKER 356 (368)
T ss_pred hhhHHHHHHHHHhhc
Confidence 467788888887643
No 38
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-40 Score=329.05 Aligned_cols=246 Identities=41% Similarity=0.733 Sum_probs=227.9
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcc
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 536 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~ 536 (772)
.+++|+.++|+.....++++.+..|+..+++|.++|+.+|.+++||||||+|||.+|+++|..++.+|+.+..+++.++|
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCc-hhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCc
Q 044198 537 FGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGG-VDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDP 615 (772)
Q Consensus 537 vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~-~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~ 615 (772)
.|++.+.||+.|..|+...|||||+||||+++++|-+....+.. ..+.+-+||++||++...++|-+|+|||+|+.|||
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP 286 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccch
Confidence 99999999999999999999999999999999998543222221 55667788999999999999999999999999999
Q ss_pred cccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 044198 616 ALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQ 695 (772)
Q Consensus 616 allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~ 695 (772)
||+||||+|+.+++|+|++..|..|++.+.+.......+|.+++.+..+||+|+|+++.|++|.+.|+++...
T Consensus 287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~------- 359 (388)
T KOG0651|consen 287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERD------- 359 (388)
T ss_pred hhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhH-------
Confidence 9999999999999999999999999999999888888999999999999999999999999999999988653
Q ss_pred CCCCCCcccccccccHHHHHHHHhhC
Q 044198 696 RENPEGAAGEVAEIKKEHFEESMKYA 721 (772)
Q Consensus 696 ~~~~~~~~~~~~~i~~~~~~~al~~~ 721 (772)
.+-.|+|..++.+.
T Consensus 360 ------------~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 360 ------------EVLHEDFMKLVRKQ 373 (388)
T ss_pred ------------HHhHHHHHHHHHHH
Confidence 47889999988775
No 39
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-39 Score=316.67 Aligned_cols=245 Identities=43% Similarity=0.757 Sum_probs=222.7
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
.-++++|+|+||+.+|+++|++.+++|+.||+.|-.+|+.||+|||+|||||||||.+||++|+..++.|+.+-|+++..
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCc----hhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCC
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTH----GEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNS 337 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~----~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ 337 (772)
+|+|+....++++|+.|+....||+|+||+|++...+-..+ +++ +|..-.|.+.+||+..++++-|+.+||+|+.
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnev-qrtmleli~qldgfdprgnikvlmatnrpdt 328 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEV-QRTMLELINQLDGFDPRGNIKVLMATNRPDT 328 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHH-HHHHHHHHHhccCCCCCCCeEEEeecCCCCC
Confidence 99999999999999999999999999999999988764332 233 3334446677899999999999999999999
Q ss_pred CChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhcccccc
Q 044198 338 IDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDL 417 (772)
Q Consensus 338 ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 417 (772)
|||+|.||||+++.++|..||.+.|..|+++|.+.|.+..++-++.+|+.+..-+|+++.++|.+|.+.+++.+..
T Consensus 329 ldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk---- 404 (435)
T KOG0729|consen 329 LDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRK---- 404 (435)
T ss_pred cCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhh----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876532
Q ss_pred ccchhhHhhhhhhhccchhhhhhhhhc
Q 044198 418 EEDTIDAEVLSSMYVTNENLNAAVAIT 444 (772)
Q Consensus 418 ~~~~~~~~~~~~~~v~~~d~~~al~~~ 444 (772)
..+..||..|..++
T Consensus 405 -------------~atekdfl~av~kv 418 (435)
T KOG0729|consen 405 -------------VATEKDFLDAVNKV 418 (435)
T ss_pred -------------hhhHHHHHHHHHHH
Confidence 34566777776554
No 40
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-39 Score=370.14 Aligned_cols=477 Identities=33% Similarity=0.516 Sum_probs=344.9
Q ss_pred CCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CeEEEEechh
Q 044198 184 DDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG-----CYFLCINGPE 258 (772)
Q Consensus 184 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~-----~~~~~v~~~~ 258 (772)
..++|++|||++..+.++++++.+|+.+|+.|..+++.+|+|||+|||||||||+.|+++|..+. ..|+.-.|.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 46799999999999999999999999999999999999999999999999999999999998873 3467778899
Q ss_pred hhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCC
Q 044198 259 IMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSI 338 (772)
Q Consensus 259 ~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~l 338 (772)
..++|+|+.+..++.+|+.|+..+|+|+|+||||-++|.+....+.....++..|+.+|||+..++.|+||||||+++.+
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~ 419 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAI 419 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcccc
Confidence 99999999999999999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred ChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhcccccc
Q 044198 339 DPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDL 417 (772)
Q Consensus 339 d~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 417 (772)
||++||||||+++++|+.|+.++|..|+.+|.....-. ....+..+|..|.||.|+|+.++|.+|++.++++..+.+..
T Consensus 420 dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~ 499 (1080)
T KOG0732|consen 420 DPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYS 499 (1080)
T ss_pred chhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeec
Confidence 99999999999999999999999999999998876522 22346789999999999999999999999999887665543
Q ss_pred ccchhhHhhhhhhhccchhhhhhhhhcCcccchhhhcccCCcc--------cc----cccchHHH---HHHHhhhccccC
Q 044198 418 EEDTIDAEVLSSMYVTNENLNAAVAITSPSALREIAVEVPNVR--------WA----DIGGLDTV---KRELQETVQYPV 482 (772)
Q Consensus 418 ~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~v~--------~~----~i~g~~~~---k~~l~~~i~~~~ 482 (772)
....... ....+.+...||..|+....|+.-+........+. +. .+-+.-.+ ...+.+...+.+
T Consensus 500 s~~kl~~-d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v 578 (1080)
T KOG0732|consen 500 SSDKLLI-DVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLV 578 (1080)
T ss_pred ccccccc-cchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHH
Confidence 3332221 12344588889999999988887765332221111 11 11111111 111111111111
Q ss_pred CchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh-CCcEEEEecccchhcc-cccchHHHHHHHHHHHhCCCeEEE
Q 044198 483 EHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC-QANFISIKGPELLTMW-FGESEANVRDVFDKARQSAPCVLF 560 (772)
Q Consensus 483 ~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~-~~~~i~v~~~~l~~~~-vg~se~~i~~vf~~a~~~~p~ilf 560 (772)
+..+..-...+--...+++.|..|.|-+.+..++-+.+ +.+......+.+++.- .+..+..|..+|..|+...|||+|
T Consensus 579 ~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ 658 (1080)
T KOG0732|consen 579 RSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVF 658 (1080)
T ss_pred HhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceee
Confidence 11111000011112348899999999999999999886 5566666666655543 455678899999999999999999
Q ss_pred EcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHH
Q 044198 561 FDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQI 640 (772)
Q Consensus 561 iDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~I 640 (772)
|-.+|.++.... ..+...++..++.......+..+-+-+.-+.-.+ .....+..|..+.+...
T Consensus 659 ip~~d~w~~~~p---------~s~~~~~~~~l~~~~~~t~i~e~~t~~~~~~~~~--------~~~~t~~~p~~~s~~~f 721 (1080)
T KOG0732|consen 659 IPNVDEWARVIP---------VSFLEEFLSSLDEKALSTPILELHTWDTSFESVN--------KSVVTLSKPSAESTGAF 721 (1080)
T ss_pred ccchhhhhhcCc---------chhhhcchhcchhhhhccchhhhccccccccccC--------ccccccccchhhhhHHH
Confidence 999999976543 2344445555553322222222222111110000 13455666777777766
Q ss_pred HHHhhccC-------------C------CCCcccHHHHHHHcCCCCHHHHHHHHHHH
Q 044198 641 FKSCLRKS-------------P------VSKDIDLKAIAKYTHGFSGADITEICQRA 678 (772)
Q Consensus 641 l~~~~~~~-------------~------~~~~~~~~~la~~~~g~sg~di~~l~~~a 678 (772)
|+..+++. + +..+....+++.....+.+.|++.+++..
T Consensus 722 f~r~I~~~~~~~~~~~~k~~~~~~~~p~v~~d~~~t~~~~~~~~~~~~d~~~~~~~~ 778 (1080)
T KOG0732|consen 722 FKRLIRKISQEPSGEAGKRPRPLPELPKVAKDSEFTELDESKKKIEAEDLRLKNRLK 778 (1080)
T ss_pred HHHHHHHHhhhhhccccCCCCcccccccccCCccccchhhhhcchhHHHHHHhhhhh
Confidence 66555321 0 11122233444555566777776666653
No 41
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=9.9e-39 Score=363.18 Aligned_cols=250 Identities=43% Similarity=0.770 Sum_probs=228.7
Q ss_pred hcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccc
Q 044198 453 AVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 532 (772)
Q Consensus 453 ~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l 532 (772)
..+.|.++|+|++|++++|+++.+.+.+ +++++.|.++|..+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 3456889999999999999999998886 889999999999999999999999999999999999999999999999999
Q ss_pred hhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCC-CCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCC
Q 044198 533 LTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVG-DGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPD 611 (772)
Q Consensus 533 ~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~-~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 611 (772)
.+.|+|.+++.++.+|+.|+...||||||||||.++..|+...+ ......+++++||.+||++....+++||+|||+|+
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~ 204 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPD 204 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChh
Confidence 99999999999999999999999999999999999988865311 12235689999999999998888999999999999
Q ss_pred CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 044198 612 MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDI 691 (772)
Q Consensus 612 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~ 691 (772)
.|||+++||||||+.|++++|+.++|.+||+.++++.++..++++..+|+.|.||||+||+++|++|+..|.++..
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~---- 280 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNK---- 280 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC----
Confidence 9999999999999999999999999999999999998888889999999999999999999999999888866532
Q ss_pred hhccCCCCCCcccccccccHHHHHHHHhhCC
Q 044198 692 KKGQRENPEGAAGEVAEIKKEHFEESMKYAR 722 (772)
Q Consensus 692 ~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~ 722 (772)
..|+.+||++|+..+.
T Consensus 281 ---------------~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 281 ---------------TEITMNDIEEAIDRVI 296 (495)
T ss_pred ---------------CCCCHHHHHHHHHHHh
Confidence 2699999999999763
No 42
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=1.5e-38 Score=352.62 Aligned_cols=251 Identities=44% Similarity=0.763 Sum_probs=216.5
Q ss_pred cccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc----------
Q 044198 454 VEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN---------- 523 (772)
Q Consensus 454 ~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~---------- 523 (772)
.+.|+++|++|+|++..++.+++.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 4668999999999999999999999999999999999999999999999999999999999999998644
Q ss_pred EEEEecccchhcccccchHHHHHHHHHHHhC----CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCC
Q 044198 524 FISIKGPELLTMWFGESEANVRDVFDKARQS----APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKK 599 (772)
Q Consensus 524 ~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~ 599 (772)
|+.+++++++++|+|++++.++.+|+.|+.. .||||||||+|+++..|+.+ ..++...+++++||++||++....
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~-~s~d~e~~il~~LL~~LDgl~~~~ 332 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG-VSSDVETTVVPQLLSELDGVESLD 332 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC-ccchHHHHHHHHHHHHhcccccCC
Confidence 6788999999999999999999999998764 69999999999999888653 122335678999999999998888
Q ss_pred cEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhcc-CCCC---------CcccHHHHHHH-------
Q 044198 600 TVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRK-SPVS---------KDIDLKAIAKY------- 662 (772)
Q Consensus 600 ~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~-~~~~---------~~~~~~~la~~------- 662 (772)
+++||+|||+++.||||++||||||.+|+|++|+.++|.+||+.++.. .++. ...++..+++.
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999864 3441 11222333222
Q ss_pred ----------------------cCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhh
Q 044198 663 ----------------------THGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKY 720 (772)
Q Consensus 663 ----------------------~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~ 720 (772)
++.+||++|+++|.+|...|+++.+... ...|+.+|+..|+..
T Consensus 413 ~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~---------------~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 413 TSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGG---------------QVGLRIEHLLAAVLD 477 (512)
T ss_pred hhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcC---------------CcCcCHHHHHHHHHH
Confidence 5678999999999999999999887321 136999999999875
No 43
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-38 Score=342.15 Aligned_cols=229 Identities=43% Similarity=0.720 Sum_probs=221.0
Q ss_pred CCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 044198 184 DDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKM 263 (772)
Q Consensus 184 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~ 263 (772)
..+.|+||||+.++++.+++.+.+|-++|++|....+..+.|||||||||||||.||-++|...+..|+.+.|++++++|
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhh
Q 044198 264 AGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALR 343 (772)
Q Consensus 264 ~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~ 343 (772)
.|.+++.+|.+|..|+...|||||+||+|.++|+|+-....+.+|+++||++.|||...-..|.++|+|.+|+.|||||.
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALL 821 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALL 821 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhc
Confidence 99999999999999999999999999999999999988888999999999999999999899999999999999999999
Q ss_pred ccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhc
Q 044198 344 RSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKM 412 (772)
Q Consensus 344 r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 412 (772)
||||+|+.++.+.|++.+|++||+.......+..++|++-+|..|+||+|+|+..++..|.+.++.+..
T Consensus 822 RpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l 890 (952)
T KOG0735|consen 822 RPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEIL 890 (952)
T ss_pred CCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887776543
No 44
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=5.9e-38 Score=343.86 Aligned_cols=249 Identities=49% Similarity=0.841 Sum_probs=228.8
Q ss_pred cccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch
Q 044198 454 VEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 533 (772)
Q Consensus 454 ~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~ 533 (772)
.+.|.+.|++++|++..++.+.+.+.+++.+++.|..+|+.+++|+|||||||||||++|+++|+.++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCC-chhHHHHHHHHHhcCCCCCCcEEEEeecCCCCC
Q 044198 534 TMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGG-GVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDM 612 (772)
Q Consensus 534 ~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~-~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 612 (772)
.+|+|+.+..++.+|+.++...|+||||||+|.+...|.......+ ...+.+.++|.+++++....++.||+|||+++.
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 9999999999999999999999999999999999887754322211 245678889999999877789999999999999
Q ss_pred CCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044198 613 IDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIK 692 (772)
Q Consensus 613 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~ 692 (772)
+|++++||||||+.|+|++|+.++|.+||+.++++..+..++++..+++.|+||||+||.++|++|++.|+++..
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~----- 348 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREER----- 348 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-----
Confidence 999999999999999999999999999999999999988889999999999999999999999999999988742
Q ss_pred hccCCCCCCcccccccccHHHHHHHHhhC
Q 044198 693 KGQRENPEGAAGEVAEIKKEHFEESMKYA 721 (772)
Q Consensus 693 ~~~~~~~~~~~~~~~~i~~~~~~~al~~~ 721 (772)
..|+.+||++|++++
T Consensus 349 --------------~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 349 --------------DYVTMDDFIKAVEKV 363 (364)
T ss_pred --------------CccCHHHHHHHHHHh
Confidence 269999999999875
No 45
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=4.7e-37 Score=352.22 Aligned_cols=246 Identities=43% Similarity=0.752 Sum_probs=225.3
Q ss_pred cCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhc
Q 044198 456 VPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 535 (772)
Q Consensus 456 ~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~ 535 (772)
.+.++|+|++|++++++.+.+.+.+ +++++.|..++..+++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 3568999999999999999998876 788899999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCC-CCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCC
Q 044198 536 WFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVG-DGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMID 614 (772)
Q Consensus 536 ~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~-~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 614 (772)
++|.....++.+|+.|+...||||||||+|.++..|+.+.+ ......+++++||.+||++....+++||+|||+|+.+|
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD 335 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILD 335 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhh
Confidence 99999999999999999999999999999999988865322 22235678999999999998888999999999999999
Q ss_pred ccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044198 615 PALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKG 694 (772)
Q Consensus 615 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~ 694 (772)
+|++||||||+.|+|++|+.++|.+||+.++++.++..++++..+|+.|.||||+||+++|++|+..|.++..
T Consensus 336 ~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~------- 408 (638)
T CHL00176 336 AALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKK------- 408 (638)
T ss_pred hhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC-------
Confidence 9999999999999999999999999999999998888899999999999999999999999999988876542
Q ss_pred cCCCCCCcccccccccHHHHHHHHhhC
Q 044198 695 QRENPEGAAGEVAEIKKEHFEESMKYA 721 (772)
Q Consensus 695 ~~~~~~~~~~~~~~i~~~~~~~al~~~ 721 (772)
..|+.+||++|+..+
T Consensus 409 ------------~~It~~dl~~Ai~rv 423 (638)
T CHL00176 409 ------------ATITMKEIDTAIDRV 423 (638)
T ss_pred ------------CCcCHHHHHHHHHHH
Confidence 269999999999876
No 46
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=329.96 Aligned_cols=247 Identities=41% Similarity=0.710 Sum_probs=225.4
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
..++++|+||||++.++++|++.+.+|+.++++++.+|+.+++|+||+||||||||++|+++|++++.+++.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCc---hhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCC
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTH---GEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSI 338 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~l 338 (772)
++.|+.+..++.+|..+....|+||||||+|.++.++.... +....+++..|++.++++....++.+|++||+++.+
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 99999999999999999999999999999999987764322 223356777888889988877889999999999999
Q ss_pred ChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccc
Q 044198 339 DPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLE 418 (772)
Q Consensus 339 d~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 418 (772)
||++.|+|||++.|+++.|+.++|.+||+.++.++.+..++++..++..|+||+++||.++|++|++.++++..
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~------ 371 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR------ 371 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887642
Q ss_pred cchhhHhhhhhhhccchhhhhhhhhcC
Q 044198 419 EDTIDAEVLSSMYVTNENLNAAVAITS 445 (772)
Q Consensus 419 ~~~~~~~~~~~~~v~~~d~~~al~~~~ 445 (772)
..++.+||..|+..+.
T Consensus 372 -----------~~i~~~df~~A~~~v~ 387 (398)
T PTZ00454 372 -----------YVILPKDFEKGYKTVV 387 (398)
T ss_pred -----------CccCHHHHHHHHHHHH
Confidence 3578889998887653
No 47
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-36 Score=339.12 Aligned_cols=242 Identities=45% Similarity=0.763 Sum_probs=222.3
Q ss_pred CCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 044198 184 DDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKM 263 (772)
Q Consensus 184 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~ 263 (772)
..++|.|+.|+++++++|.|++.+ |.+|+.|..+|...|+|+||+||||||||+||+|+|++.+.||+.++|++++..+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 358999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHcCCceEEeccccccccCCC---C-CchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCC
Q 044198 264 AGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKRE---K-THGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSID 339 (772)
Q Consensus 264 ~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~---~-~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld 339 (772)
.|....+++.+|+.++.+.|||+||||||.+...++ . ..++.....++||+..|||+.....|+|+++||+++.||
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 999999999999999999999999999999998884 2 233445678999999999999988999999999999999
Q ss_pred hhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccc
Q 044198 340 PALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLE 418 (772)
Q Consensus 340 ~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 418 (772)
++++||||||+.|.++.|+..+|.+|++.|.+...+. +++++..+|..|+||+|+||..+|.+|+..+.++...
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~----- 539 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLR----- 539 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccC-----
Confidence 9999999999999999999999999999999998885 7788989999999999999999999999998876533
Q ss_pred cchhhHhhhhhhhccchhhhhhhhh
Q 044198 419 EDTIDAEVLSSMYVTNENLNAAVAI 443 (772)
Q Consensus 419 ~~~~~~~~~~~~~v~~~d~~~al~~ 443 (772)
.++..++..|+..
T Consensus 540 ------------~i~~~~~~~a~~R 552 (774)
T KOG0731|consen 540 ------------EIGTKDLEYAIER 552 (774)
T ss_pred ------------ccchhhHHHHHHH
Confidence 3556677777663
No 48
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-36 Score=349.11 Aligned_cols=267 Identities=38% Similarity=0.655 Sum_probs=228.5
Q ss_pred cCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhC-----CcEEEEecc
Q 044198 456 VPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKGP 530 (772)
Q Consensus 456 ~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~-----~~~i~v~~~ 530 (772)
...+.|+++||++.+..+|++++..|+.+++.|..+++.||+|+||+||||||||+.|+++|..+. ..|+--+++
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 356899999999999999999999999999999999999999999999999999999999998873 456777999
Q ss_pred cchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCC
Q 044198 531 ELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRP 610 (772)
Q Consensus 531 ~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 610 (772)
+.+++|+|+.|++++.+|+.|++..|+|+||||||.|++.|... ....+..++++||..|||+...+.|+||+|||||
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk--qEqih~SIvSTLLaLmdGldsRgqVvvigATnRp 416 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK--QEQIHASIVSTLLALMDGLDSRGQVVVIGATNRP 416 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch--HHHhhhhHHHHHHHhccCCCCCCceEEEcccCCc
Confidence 99999999999999999999999999999999999999999653 2233678999999999999999999999999999
Q ss_pred CCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044198 611 DMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEK 689 (772)
Q Consensus 611 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~ 689 (772)
+.+|||+.||||||+.+|||+|+.++|.+|+..+.++-.-. ...-+..||+.|.||-||||+++|.+|++.++++....
T Consensus 417 da~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq 496 (1080)
T KOG0732|consen 417 DAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQ 496 (1080)
T ss_pred cccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCe
Confidence 99999999999999999999999999999999998775422 22346899999999999999999999999999986543
Q ss_pred hhhhccCCCCCCcccccccccHHHHHHHHhhCCCCCCH
Q 044198 690 DIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSD 727 (772)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~ 727 (772)
.......- ........|..+||..|+.+.-|+.+.
T Consensus 497 ~y~s~~kl---~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 497 IYSSSDKL---LIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred eecccccc---cccchhhhhhhHhhhhhhhccCCCCCc
Confidence 21111100 011112347888888888877665443
No 49
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-36 Score=307.91 Aligned_cols=227 Identities=41% Similarity=0.740 Sum_probs=214.0
Q ss_pred CCccccccCcHHHHHHHHHHHHcccCChhHHHHhC-CCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 044198 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALG-VKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKM 263 (772)
Q Consensus 185 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~-~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~ 263 (772)
.++|+||||+++.++.+++.+.+|+++|++|..-+ +.+++||||+||||||||++|+++|++.++.|+.+.++.+.+++
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 57899999999999999999999999999996443 47889999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCc--eEEEEeeCCCCCCChh
Q 044198 264 AGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAH--VMVIGATNRPNSIDPA 341 (772)
Q Consensus 264 ~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~--v~vI~atn~~~~ld~a 341 (772)
.|+.++.++.+|..|..-+|+||||||+|+++..|+....+....+.+++..+.||+..+.+ |+|+||||+|.++|.+
T Consensus 168 fgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeA 247 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEA 247 (386)
T ss_pred HHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHH
Confidence 99999999999999999999999999999999988777778888899999999999987665 9999999999999999
Q ss_pred hhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhcc
Q 044198 342 LRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMD 413 (772)
Q Consensus 342 l~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 413 (772)
+.| |+.+.++++.|+..+|..||+..++.-.+.+++|+.++|..|.||+|.||..+|+.|+...++....
T Consensus 248 iiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 248 IIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred HHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 999 9999999999999999999999999999999999999999999999999999999999988877654
No 50
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=4.2e-35 Score=321.51 Aligned_cols=246 Identities=46% Similarity=0.771 Sum_probs=222.7
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
..+..+|+||||+++++++|++++.+|+.++++++.+|+.+++++|||||||||||++|+++|++++.+++.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCch---hhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCC
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHG---EVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSI 338 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~l 338 (772)
++.|+.+..++.+|..+....|+|+||||+|.++.++..... ....+.+..|+..++++....++.||+|||+++.+
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 999999999999999999999999999999999977643221 12234556677888888777889999999999999
Q ss_pred ChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccc
Q 044198 339 DPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLE 418 (772)
Q Consensus 339 d~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 418 (772)
|+++.|+|||++.|+|+.|+.++|.+||+.++..+.+..+++++.++..++||+++|+..+|++|++.++++.
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------- 408 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------- 408 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-------
Confidence 9999999999999999999999999999999999999889999999999999999999999999999988764
Q ss_pred cchhhHhhhhhhhccchhhhhhhhhc
Q 044198 419 EDTIDAEVLSSMYVTNENLNAAVAIT 444 (772)
Q Consensus 419 ~~~~~~~~~~~~~v~~~d~~~al~~~ 444 (772)
...++.+||..|+..+
T Consensus 409 ----------r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 409 ----------RMKVTQADFRKAKEKV 424 (438)
T ss_pred ----------CCccCHHHHHHHHHHH
Confidence 2347888998888765
No 51
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-36 Score=296.27 Aligned_cols=227 Identities=37% Similarity=0.670 Sum_probs=209.2
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSK 262 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~ 262 (772)
-+++.|+|+.|++.+++.|++++.+|+..|++|.. +-.|-+|||||||||||||.||+++|.+.+..|+.|+.++++++
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK 205 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 205 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH
Confidence 37899999999999999999999999999999976 34566899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccc-cCceEEEEeeCCCCCCChh
Q 044198 263 MAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKS-RAHVMVIGATNRPNSIDPA 341 (772)
Q Consensus 263 ~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~-~~~v~vI~atn~~~~ld~a 341 (772)
|.|++++.++.+|+.|+.+.|+||||||||.+|..++.+.++..+|+...|+-.|.|.-. ...|+|+|+||-|..||.+
T Consensus 206 WmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsA 285 (439)
T KOG0739|consen 206 WMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSA 285 (439)
T ss_pred HhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHH
Confidence 999999999999999999999999999999999999999999999999999999988754 4579999999999999999
Q ss_pred hhccCCceeEEEeCCCCHHHHHHHHHHHhccCCc-ccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhc
Q 044198 342 LRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKL-AEDVNLETVARETHGFVGADLAALCTEGAMQCIREKM 412 (772)
Q Consensus 342 l~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 412 (772)
+|| ||++.|+||.|+...|..+++.|+...+. ..+.|+.++++.|+||+|+||..+++.|.++-+|+..
T Consensus 286 IRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvq 355 (439)
T KOG0739|consen 286 IRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQ 355 (439)
T ss_pred HHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhh
Confidence 999 99999999999999999999999876553 2445899999999999999999999999888776643
No 52
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=2.1e-35 Score=343.14 Aligned_cols=247 Identities=42% Similarity=0.745 Sum_probs=224.7
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcc
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 536 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~ 536 (772)
....|.++.|.+..++.+.+.+.+ +..+..+..++...++|++|+||||||||++++++|++++.+|+.++++++...|
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 356799999999999999998887 5667778888888899999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCC-CCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCc
Q 044198 537 FGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSV-GDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDP 615 (772)
Q Consensus 537 vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~-~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~ 615 (772)
+|.++..++.+|+.|+...||||||||+|.++..|+.+. +......+++++||.+||++..+.+++||+|||+|+.||+
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~ 305 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 305 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCH
Confidence 999999999999999999999999999999998886532 2222356799999999999998899999999999999999
Q ss_pred cccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 044198 616 ALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQ 695 (772)
Q Consensus 616 allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~ 695 (772)
|++||||||+.|+|++||.++|.+||+.++++.++..++|+..+|+.|.||||+||.++|++|+..|.++..
T Consensus 306 Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~-------- 377 (644)
T PRK10733 306 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK-------- 377 (644)
T ss_pred HHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCC--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999987532
Q ss_pred CCCCCCcccccccccHHHHHHHHhhCCC
Q 044198 696 RENPEGAAGEVAEIKKEHFEESMKYARR 723 (772)
Q Consensus 696 ~~~~~~~~~~~~~i~~~~~~~al~~~~~ 723 (772)
..|+.+||++|+..+.+
T Consensus 378 -----------~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 378 -----------RVVSMVEFEKAKDKIMM 394 (644)
T ss_pred -----------CcccHHHHHHHHHHHhc
Confidence 26999999999986643
No 53
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=1.2e-35 Score=354.33 Aligned_cols=213 Identities=19% Similarity=0.326 Sum_probs=181.7
Q ss_pred CCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcc----------cc-------------
Q 044198 482 VEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW----------FG------------- 538 (772)
Q Consensus 482 ~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~----------vg------------- 538 (772)
........++|+.+++|+||+||||||||+||||+|++++.||+.|++++++++| +|
T Consensus 1616 s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~ 1695 (2281)
T CHL00206 1616 SHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDR 1695 (2281)
T ss_pred ccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccc
Confidence 3445566788999999999999999999999999999999999999999998765 22
Q ss_pred ------------------cchH--HHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC--
Q 044198 539 ------------------ESEA--NVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-- 596 (772)
Q Consensus 539 ------------------~se~--~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-- 596 (772)
.++. .++.+|+.|++.+||||||||||+++.... ....+++||++||+..
T Consensus 1696 ~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds--------~~ltL~qLLneLDg~~~~ 1767 (2281)
T CHL00206 1696 DLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES--------NYLSLGLLVNSLSRDCER 1767 (2281)
T ss_pred ccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc--------ceehHHHHHHHhcccccc
Confidence 2223 389999999999999999999999975411 1234899999999863
Q ss_pred -CCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHh--hccCCCCC-cccHHHHHHHcCCCCHHHHH
Q 044198 597 -AKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSC--LRKSPVSK-DIDLKAIAKYTHGFSGADIT 672 (772)
Q Consensus 597 -~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~--~~~~~~~~-~~~~~~la~~~~g~sg~di~ 672 (772)
...+|+||||||+|+.||||++||||||+.|+++.|+..+|.+++... .++.++.. .+|++.+|+.|.|||||||.
T Consensus 1768 ~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLa 1847 (2281)
T CHL00206 1768 CSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLV 1847 (2281)
T ss_pred CCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHH
Confidence 457899999999999999999999999999999999999999998864 45556654 46899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhC
Q 044198 673 EICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYA 721 (772)
Q Consensus 673 ~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~ 721 (772)
++|++|+..|+++.. ..|+.++|+.|+...
T Consensus 1848 nLvNEAaliAirq~k-------------------s~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1848 ALTNEALSISITQKK-------------------SIIDTNTIRSALHRQ 1877 (2281)
T ss_pred HHHHHHHHHHHHcCC-------------------CccCHHHHHHHHHHH
Confidence 999999999998753 258999999998643
No 54
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=8.5e-35 Score=319.80 Aligned_cols=251 Identities=49% Similarity=0.809 Sum_probs=225.9
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
..++++|++|||+++++++|++.+.+|+.+++.++.+|+.++++||||||||||||++|+++|++++.+++.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCch---hhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCC
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHG---EVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSI 338 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~l 338 (772)
++.|+.+..++.+|+.+....|+||||||+|.++..+..... ....+.+.+|+..++++....++.||+|||+++.+
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~l 283 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDIL 283 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhC
Confidence 999999999999999999999999999999999877654321 12244556677778887777889999999999999
Q ss_pred ChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccc
Q 044198 339 DPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLE 418 (772)
Q Consensus 339 d~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 418 (772)
|+++.|+|||++.|+++.|+.++|.+||+.+++.+.+..++++..++..|+||+++|+..+|++|++.+++..
T Consensus 284 d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~------- 356 (389)
T PRK03992 284 DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD------- 356 (389)
T ss_pred CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999988888999999999999999999999999999888753
Q ss_pred cchhhHhhhhhhhccchhhhhhhhhcCcccc
Q 044198 419 EDTIDAEVLSSMYVTNENLNAAVAITSPSAL 449 (772)
Q Consensus 419 ~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~ 449 (772)
...++.+||..|+..+.++..
T Consensus 357 ----------~~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 357 ----------RTEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred ----------CCCcCHHHHHHHHHHHhcccc
Confidence 224788999999998876543
No 55
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=7.5e-35 Score=346.14 Aligned_cols=267 Identities=48% Similarity=0.818 Sum_probs=237.2
Q ss_pred CCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 044198 184 DDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKM 263 (772)
Q Consensus 184 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~ 263 (772)
+.++|++|+|++..++.|++.+.+|+.++++++.+++.+++|+|||||||||||++|+++|++++.+|+.++++++.++|
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW 527 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCC-chhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhh
Q 044198 264 AGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKT-HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPAL 342 (772)
Q Consensus 264 ~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al 342 (772)
.|+++..++.+|+.++...|+||||||+|.+++.++.. .....++++++|+..||++....+++||+|||+++.||+++
T Consensus 528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~al 607 (733)
T TIGR01243 528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPAL 607 (733)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhh
Confidence 99999999999999999999999999999999887643 23456789999999999998888999999999999999999
Q ss_pred hccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhcccccccc-ch
Q 044198 343 RRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEE-DT 421 (772)
Q Consensus 343 ~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~-~~ 421 (772)
+|||||++.++++.|+.++|.+||+.+.+++++..+++++.+|..|+||+|+|+..+|++|++.++++......... ..
T Consensus 608 lRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~ 687 (733)
T TIGR01243 608 LRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEV 687 (733)
T ss_pred cCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999988886543211000 00
Q ss_pred hhHhhhhhhhccchhhhhhhhhcCcccch
Q 044198 422 IDAEVLSSMYVTNENLNAAVAITSPSALR 450 (772)
Q Consensus 422 ~~~~~~~~~~v~~~d~~~al~~~~ps~~~ 450 (772)
...+......++.+||..++..++|+...
T Consensus 688 ~~~~~~~~~~i~~~~f~~al~~~~ps~~~ 716 (733)
T TIGR01243 688 GEEEFLKDLKVEMRHFLEALKKVKPSVSK 716 (733)
T ss_pred ccccccccCcccHHHHHHHHHHcCCCCCH
Confidence 00111234578999999999999887543
No 56
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=1.9e-33 Score=332.80 Aligned_cols=444 Identities=23% Similarity=0.341 Sum_probs=307.2
Q ss_pred CCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 044198 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET----------GCYFLCI 254 (772)
Q Consensus 185 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l----------~~~~~~v 254 (772)
+-.++++.|.+++++.+.+.+.. ....+++|+||||||||++++.+|..+ +..++.+
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 44667899999999887766643 235679999999999999999999987 6778899
Q ss_pred echhhh--hhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEee
Q 044198 255 NGPEIM--SKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGAT 332 (772)
Q Consensus 255 ~~~~~~--~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~at 332 (772)
+...+. .++.|+.++.++.+|+.+....++||||||+|.+.+.+....+.. .+.+.|...+ .++.+.+||+|
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~--~~~~~L~~~l----~~g~i~~IgaT 318 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSM--DASNLLKPAL----SSGKLRCIGST 318 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccH--HHHHHHHHHH----hCCCeEEEEec
Confidence 988877 478899999999999999887889999999999987654322221 1223344333 35789999999
Q ss_pred CCCC-----CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccC----Cc-ccccchhHHHHHhcCCchh-----hHH
Q 044198 333 NRPN-----SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNM----KL-AEDVNLETVARETHGFVGA-----DLA 397 (772)
Q Consensus 333 n~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~----~l-~~~~~l~~la~~t~g~~~~-----dl~ 397 (772)
|+.+ ..|+++.| ||. .|+++.|+.+++.+||+...... .+ -.+..+..++..++.|.+. -..
T Consensus 319 t~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai 395 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAI 395 (731)
T ss_pred CHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHH
Confidence 9743 57999999 997 59999999999999999654332 11 1233467777777777644 224
Q ss_pred HHHHHHHHHh-hhhhccccccccchhhHhhhhhhhccchhhhhhhhhcCcccch-------hhhcccCCcccccccchHH
Q 044198 398 ALCTEGAMQC-IREKMDLIDLEEDTIDAEVLSSMYVTNENLNAAVAITSPSALR-------EIAVEVPNVRWADIGGLDT 469 (772)
Q Consensus 398 ~l~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~-------~~~~~~~~v~~~~i~g~~~ 469 (772)
.++.+|+... ++... .....++.+|+..++......... +........-.+.|.|+++
T Consensus 396 ~lld~a~a~~~~~~~~--------------~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ 461 (731)
T TIGR02639 396 DVIDEAGASFRLRPKA--------------KKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDE 461 (731)
T ss_pred HHHHHhhhhhhcCccc--------------ccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHH
Confidence 4555544321 11000 012346677777776654211110 0011111222345667777
Q ss_pred HHHHHhhhccccCCchHHHhhcCC----CCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchh-----cccccc
Q 044198 470 VKRELQETVQYPVEHPEMFEKFGM----SPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT-----MWFGES 540 (772)
Q Consensus 470 ~k~~l~~~i~~~~~~~~~~~~~~~----~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~-----~~vg~s 540 (772)
+.+.+...+... +.|+ +|..++||+||||||||++|+++|..++.+++.++++++.. +++|..
T Consensus 462 ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~ 533 (731)
T TIGR02639 462 AIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP 533 (731)
T ss_pred HHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC
Confidence 777766655431 2233 23445899999999999999999999999999999988643 223322
Q ss_pred hH-----HHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC---------CCCcEEEEee
Q 044198 541 EA-----NVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS---------AKKTVFVIGA 606 (772)
Q Consensus 541 e~-----~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~---------~~~~v~vi~a 606 (772)
.. ..+.+.+..+..+.+|+||||||.+ ...+.+.||+.||... +..+.++|+|
T Consensus 534 ~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-------------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~T 600 (731)
T TIGR02639 534 PGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-------------HPDIYNILLQVMDYATLTDNNGRKADFRNVILIMT 600 (731)
T ss_pred CCCcccchhhHHHHHHHhCCCeEEEEechhhc-------------CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEEC
Confidence 11 1234555556677799999999987 3568899999998641 2357889999
Q ss_pred cCCCC-------------------------CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccC-------CCC---
Q 044198 607 TNRPD-------------------------MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKS-------PVS--- 651 (772)
Q Consensus 607 Tn~~~-------------------------~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~-------~~~--- 651 (772)
||... .+.|.++. |||.+|.|.+.+.++..+|++..+++. .+.
T Consensus 601 sn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i 678 (731)
T TIGR02639 601 SNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLEL 678 (731)
T ss_pred CCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEe
Confidence 98742 24567775 999999999999999999999887532 111
Q ss_pred CcccHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHH
Q 044198 652 KDIDLKAIAKY--THGFSGADITEICQRACKCAIREEI 687 (772)
Q Consensus 652 ~~~~~~~la~~--~~g~sg~di~~l~~~a~~~a~~~~~ 687 (772)
++.-++.|++. ...+..+.|+.+++.....++-+.+
T Consensus 679 ~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~ 716 (731)
T TIGR02639 679 TDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEI 716 (731)
T ss_pred CHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHH
Confidence 22335566664 3456678888888888877777655
No 57
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-33 Score=327.84 Aligned_cols=444 Identities=21% Similarity=0.301 Sum_probs=302.5
Q ss_pred CccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEEe
Q 044198 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET----------GCYFLCIN 255 (772)
Q Consensus 186 ~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l----------~~~~~~v~ 255 (772)
-.++.+.|.+++++++.+.+.. ....++||+||||||||++++.++..+ +..++.++
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 3466789999998888876654 124678999999999999999999864 44556666
Q ss_pred chhhh--hhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeC
Q 044198 256 GPEIM--SKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATN 333 (772)
Q Consensus 256 ~~~~~--~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn 333 (772)
...+. .++.|+.+.+++.+|..+....++||||||+|.++..+....+.. .+.+.|. ....+..+.+||+|+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~--d~~nlLk----p~L~~g~i~vIgATt 323 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQV--DAANLIK----PLLSSGKIRVIGSTT 323 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHH--HHHHHHH----HHHhCCCeEEEecCC
Confidence 55555 457889999999999999888889999999999987664322221 2223333 333467899999999
Q ss_pred CCC-----CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccc-----hhHHHHHhcCC-----chhhHHH
Q 044198 334 RPN-----SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVN-----LETVARETHGF-----VGADLAA 398 (772)
Q Consensus 334 ~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~-----l~~la~~t~g~-----~~~dl~~ 398 (772)
+++ ..|++|.| ||. .|.++.|+.+++.+||+.+...+....++. +...+..+..| .+.....
T Consensus 324 ~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaid 400 (758)
T PRK11034 324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_pred hHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHH
Confidence 874 57999999 996 699999999999999998766555444443 33334444443 4446677
Q ss_pred HHHHHHHHhhhhhccccccccchhhHhhhhhhhccchhhhhhhhhcCcccchhh-------hcccCCcccccccchHHHH
Q 044198 399 LCTEGAMQCIREKMDLIDLEEDTIDAEVLSSMYVTNENLNAAVAITSPSALREI-------AVEVPNVRWADIGGLDTVK 471 (772)
Q Consensus 399 l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~-------~~~~~~v~~~~i~g~~~~k 471 (772)
++.+|+...--... . .....++.+|+.+.+........... .......--..|.|++++.
T Consensus 401 lldea~a~~~~~~~-----~--------~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai 467 (758)
T PRK11034 401 VIDEAGARARLMPV-----S--------KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAI 467 (758)
T ss_pred HHHHHHHhhccCcc-----c--------ccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHH
Confidence 78777643211000 0 00123455566555544321111100 0011111123578999999
Q ss_pred HHHhhhccccCCchHHHhhcCC----CCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch-----hcccccchH
Q 044198 472 RELQETVQYPVEHPEMFEKFGM----SPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL-----TMWFGESEA 542 (772)
Q Consensus 472 ~~l~~~i~~~~~~~~~~~~~~~----~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~-----~~~vg~se~ 542 (772)
+.+.+.+.... .|+ +|..++||+||||||||.+|+++|..++.+|+.++++++. ++++|....
T Consensus 468 ~~l~~~i~~~~--------~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~g 539 (758)
T PRK11034 468 EALTEAIKMSR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPG 539 (758)
T ss_pred HHHHHHHHHHh--------ccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCC
Confidence 98888775421 122 3445799999999999999999999999999999998864 334443222
Q ss_pred HH-----HHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC---------CCCcEEEEeecC
Q 044198 543 NV-----RDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS---------AKKTVFVIGATN 608 (772)
Q Consensus 543 ~i-----~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~---------~~~~v~vi~aTn 608 (772)
.+ ..+.+..+..+.+|+||||||.+ ...+.+.||+.||... ...++++|+|||
T Consensus 540 yvg~~~~g~L~~~v~~~p~sVlllDEieka-------------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN 606 (758)
T PRK11034 540 YVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-------------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_pred cccccccchHHHHHHhCCCcEEEeccHhhh-------------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCC
Confidence 11 23344445566699999999998 3568899999998531 125789999999
Q ss_pred CC-------------------------CCCCccccCCCCccccccCCCCCHHHHHHHHHHhhcc-------CCCC---Cc
Q 044198 609 RP-------------------------DMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRK-------SPVS---KD 653 (772)
Q Consensus 609 ~~-------------------------~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~-------~~~~---~~ 653 (772)
.- ..+.|++++ |+|.+|.|++.+.++..+|+...+++ .++. ++
T Consensus 607 ~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~ 684 (758)
T PRK11034 607 AGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQ 684 (758)
T ss_pred cCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECH
Confidence 32 135577886 99999999999999999999877642 2232 22
Q ss_pred ccHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH
Q 044198 654 IDLKAIAKYT--HGFSGADITEICQRACKCAIREEI 687 (772)
Q Consensus 654 ~~~~~la~~~--~g~sg~di~~l~~~a~~~a~~~~~ 687 (772)
.-++.|++.. ..|-.+.|+.+++.-...++.+.+
T Consensus 685 ~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 685 EARDWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 2355666533 345578899888888877777665
No 58
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-34 Score=329.41 Aligned_cols=250 Identities=48% Similarity=0.800 Sum_probs=233.1
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSK 262 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~ 262 (772)
.+.++|.++||++..++.+++.+.+|+.+++.+...++.+++++|||||||||||+||+++|.+++.+|+.+.++++.++
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhh
Q 044198 263 MAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPAL 342 (772)
Q Consensus 263 ~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al 342 (772)
|.|++++.++.+|..|+...||||||||+|.+++.++...+....+++.+|+..|+++....+|+||+|||+++.+|+++
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~ 395 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPAL 395 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhh
Confidence 99999999999999999999999999999999999987766666899999999999999999999999999999999999
Q ss_pred hccCCceeEEEeCCCCHHHHHHHHHHHhccCC--cccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccccc
Q 044198 343 RRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMK--LAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEED 420 (772)
Q Consensus 343 ~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~--l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 420 (772)
.|+|||+..++++.|+.++|.+|++.++.... +..+++++.+++.|.||+++|+..+|++|++.+++...
T Consensus 396 lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~-------- 467 (494)
T COG0464 396 LRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR-------- 467 (494)
T ss_pred cccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc--------
Confidence 99999999999999999999999999998544 46788999999999999999999999999998887642
Q ss_pred hhhHhhhhhhhccchhhhhhhhhcCccc
Q 044198 421 TIDAEVLSSMYVTNENLNAAVAITSPSA 448 (772)
Q Consensus 421 ~~~~~~~~~~~v~~~d~~~al~~~~ps~ 448 (772)
...++.+||..|+....|+.
T Consensus 468 --------~~~~~~~~~~~a~~~~~p~~ 487 (494)
T COG0464 468 --------RREVTLDDFLDALKKIKPSV 487 (494)
T ss_pred --------cCCccHHHHHHHHHhcCCCC
Confidence 23578899999999887763
No 59
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=3.4e-34 Score=297.78 Aligned_cols=191 Identities=20% Similarity=0.250 Sum_probs=165.1
Q ss_pred cCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcccccchHHHHHHHHHHHh-----CCCeEEEEcCch
Q 044198 491 FGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQ-----SAPCVLFFDELD 565 (772)
Q Consensus 491 ~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~-----~~p~ilfiDEid 565 (772)
.++++|.+++||||||||||++|+++|++++.+|+.++++++.++|+|++|+.+|++|+.|+. .+||||||||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 578999999999999999999999999999999999999999999999999999999999975 469999999999
Q ss_pred hhhhccCCCCCCCCchhHHH-HHHHHHhcCC------------CCCCcEEEEeecCCCCCCCccccCCCCccccccCCCC
Q 044198 566 SIAIQRGSSVGDGGGVDRIV-NQLLTEMDGL------------SAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLP 632 (772)
Q Consensus 566 ~l~~~r~~~~~~~~~~~~~~-~~lL~~ld~~------------~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p 632 (772)
++++.|+.. +.....+++ .+||++||+. ....+|+||+|||+|+.|||||+||||||+.+ ..|
T Consensus 223 A~~g~r~~~--~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lP 298 (413)
T PLN00020 223 AGAGRFGTT--QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAP 298 (413)
T ss_pred hcCCCCCCC--CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCC
Confidence 999998742 333345665 7999999863 34678999999999999999999999999865 589
Q ss_pred CHHHHHHHHHHhhccCCCCCcccHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHHH
Q 044198 633 DEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHG----FSGADITEICQRACKCAIREE 686 (772)
Q Consensus 633 ~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g----~sg~di~~l~~~a~~~a~~~~ 686 (772)
+.++|.+||+.++++..++ .+|+..|+..+.| |+||--..+..++....+.+.
T Consensus 299 d~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~ 355 (413)
T PLN00020 299 TREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEV 355 (413)
T ss_pred CHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998876 5888889888765 677776777777766655553
No 60
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-34 Score=318.85 Aligned_cols=243 Identities=44% Similarity=0.745 Sum_probs=224.3
Q ss_pred CCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 044198 184 DDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKM 263 (772)
Q Consensus 184 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~ 263 (772)
..++|.|+.|.++.++++.+.++. ++.|.-|..+|...|+|+||+||||||||+||+++|++.+.||+.++++++...+
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 468999999999999999999998 8899999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCC---chhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCCh
Q 044198 264 AGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKT---HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDP 340 (772)
Q Consensus 264 ~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~ 340 (772)
+|-..+++|.+|.++++++|||+||||||++...++.. +.+..+..++||+..|||+..+..|+++++||+|+-+||
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ 303 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDP 303 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchH
Confidence 99999999999999999999999999999999888533 334556789999999999998889999999999999999
Q ss_pred hhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccccc
Q 044198 341 ALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEED 420 (772)
Q Consensus 341 al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 420 (772)
||.|||||++.|.++.||...|.+|++.|.++.++..++++..+|+.|.||+++|+..++.+|+..+.+++..
T Consensus 304 ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~------- 376 (596)
T COG0465 304 ALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKK------- 376 (596)
T ss_pred hhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCe-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887644
Q ss_pred hhhHhhhhhhhccchhhhhhhhhc
Q 044198 421 TIDAEVLSSMYVTNENLNAAVAIT 444 (772)
Q Consensus 421 ~~~~~~~~~~~v~~~d~~~al~~~ 444 (772)
.+++.+|..+...+
T Consensus 377 ----------~i~~~~i~ea~drv 390 (596)
T COG0465 377 ----------EITMRDIEEAIDRV 390 (596)
T ss_pred ----------eEeccchHHHHHHH
Confidence 35556666665544
No 61
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-33 Score=282.60 Aligned_cols=229 Identities=43% Similarity=0.760 Sum_probs=209.1
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
.+.+++|+++||+-.|+.++++.+++|+..|+++..+|+.+|++++||||||+|||.+|+++|..++.+|+.+..+.+.+
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHH---HHHHhhcccccCceEEEEeeCCCCCC
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQ---LLTLMDGMKSRAHVMVIGATNRPNSI 338 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~---L~~lld~~~~~~~v~vI~atn~~~~l 338 (772)
+|.|++...+++.|..|+...|||+|+||||++...+........+.+..+ |++.|+++.....|-+|.|||+|+.|
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcccc
Confidence 999999999999999999999999999999999987744333333344444 55566777777889999999999999
Q ss_pred ChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhh
Q 044198 339 DPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIRE 410 (772)
Q Consensus 339 d~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 410 (772)
||+|.|+||+++.+++|.|++..|+.|++.|...+.....++.+.+.+.++||.++|+...|++|.+.+++.
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~ 356 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPE 356 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccch
Confidence 999999999999999999999999999999999888888889999999999999999999999998777654
No 62
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.6e-32 Score=304.01 Aligned_cols=243 Identities=25% Similarity=0.411 Sum_probs=210.2
Q ss_pred CCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 044198 184 DDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKM 263 (772)
Q Consensus 184 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~ 263 (772)
++.+|++|||++..++.+++.... .......+|+.+++||||+||||||||++|+++|++++.+++.+++..+.+++
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 467899999999999988765432 13345677999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHcCCceEEeccccccccCCCC-CchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhh
Q 044198 264 AGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREK-THGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPAL 342 (772)
Q Consensus 264 ~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~-~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al 342 (772)
.|+++..++.+|+.++...||||||||+|.++.++.. ..+....+++.+|++.|+.. ..+|+||+|||.++.||+++
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~--~~~V~vIaTTN~~~~Ld~al 377 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK--KSPVFVVATANNIDLLPLEI 377 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC--CCceEEEEecCChhhCCHHH
Confidence 9999999999999999999999999999999875432 23445678888999988753 45799999999999999999
Q ss_pred hccCCceeEEEeCCCCHHHHHHHHHHHhccCCc--ccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccccc
Q 044198 343 RRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKL--AEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEED 420 (772)
Q Consensus 343 ~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l--~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 420 (772)
.|+|||+..++++.|+.++|.+||+.++.+... ..+.+++.++..|+||+|+||.++|.+|...+....
T Consensus 378 lR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~--------- 448 (489)
T CHL00195 378 LRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK--------- 448 (489)
T ss_pred hCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC---------
Confidence 999999999999999999999999999887643 246789999999999999999999999987776432
Q ss_pred hhhHhhhhhhhccchhhhhhhhhcCcccc
Q 044198 421 TIDAEVLSSMYVTNENLNAAVAITSPSAL 449 (772)
Q Consensus 421 ~~~~~~~~~~~v~~~d~~~al~~~~ps~~ 449 (772)
..++.+||..++..+.|.+.
T Consensus 449 ---------~~lt~~dl~~a~~~~~Pls~ 468 (489)
T CHL00195 449 ---------REFTTDDILLALKQFIPLAQ 468 (489)
T ss_pred ---------CCcCHHHHHHHHHhcCCCcc
Confidence 23678899999999998753
No 63
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=9.9e-32 Score=294.68 Aligned_cols=246 Identities=52% Similarity=0.870 Sum_probs=218.5
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
..+++.|++|+|+++++++|++++.+|+.+++.+..+|+.+++++||+||||||||++|+++|+.++.+++.+.+.++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCch---hhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCC
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHG---EVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSI 338 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~l 338 (772)
.+.++....++.+|+.+....|++|||||+|.+...+..... ....+.+.+++..++++....++.+|+|||+++.+
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~l 274 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDIL 274 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhC
Confidence 999999999999999999999999999999999876543221 12234456666777777667789999999999999
Q ss_pred ChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccc
Q 044198 339 DPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLE 418 (772)
Q Consensus 339 d~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 418 (772)
|++++++|||++.|+++.|+.++|.+|++.+...+.+..++++..++..+.||+++|+..+|++|++.++++.
T Consensus 275 d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~------- 347 (364)
T TIGR01242 275 DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE------- 347 (364)
T ss_pred ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-------
Confidence 9999999999999999999999999999999998888888899999999999999999999999999988753
Q ss_pred cchhhHhhhhhhhccchhhhhhhhhc
Q 044198 419 EDTIDAEVLSSMYVTNENLNAAVAIT 444 (772)
Q Consensus 419 ~~~~~~~~~~~~~v~~~d~~~al~~~ 444 (772)
...++.+||..|+..+
T Consensus 348 ----------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 ----------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred ----------CCccCHHHHHHHHHHh
Confidence 2347788888887653
No 64
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=7.3e-32 Score=306.95 Aligned_cols=245 Identities=44% Similarity=0.744 Sum_probs=220.1
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSK 262 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~ 262 (772)
.+.++|++++|+++.++++++++.. +.+++.+..+|..+++|+||+||||||||++++++|++++.+++.++++++.+.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 3678999999999999999999887 888999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCC---chhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCC
Q 044198 263 MAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKT---HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSID 339 (772)
Q Consensus 263 ~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld 339 (772)
+.+..+..++.+|+.+....|+||||||+|.++.+++.. ..+...+++++|+..||++....+++||+|||+++.||
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld 207 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLD 207 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcC
Confidence 999999999999999999999999999999999876542 22344578889999999998888999999999999999
Q ss_pred hhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhcccccccc
Q 044198 340 PALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEE 419 (772)
Q Consensus 340 ~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 419 (772)
|+++|+|||++.|+++.|+.++|.+|++.+++...+..+.++..++..+.||+++|+..+|++|+..+.+..
T Consensus 208 ~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~-------- 279 (495)
T TIGR01241 208 PALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN-------- 279 (495)
T ss_pred HHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--------
Confidence 999999999999999999999999999999988877778889999999999999999999999987765543
Q ss_pred chhhHhhhhhhhccchhhhhhhhhcC
Q 044198 420 DTIDAEVLSSMYVTNENLNAAVAITS 445 (772)
Q Consensus 420 ~~~~~~~~~~~~v~~~d~~~al~~~~ 445 (772)
...++.+|+..|+....
T Consensus 280 ---------~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 280 ---------KTEITMNDIEEAIDRVI 296 (495)
T ss_pred ---------CCCCCHHHHHHHHHHHh
Confidence 12467788888877653
No 65
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=3.2e-31 Score=294.33 Aligned_cols=221 Identities=42% Similarity=0.698 Sum_probs=195.2
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------E
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY----------F 251 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~----------~ 251 (772)
..++++|++|||+++++++|++.+.+|+.+++++..+|+.+++|+|||||||||||++++++|++++.+ |
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 457889999999999999999999999999999999999999999999999999999999999998543 5
Q ss_pred EEEechhhhhhcccchHHHHHHHHHHHHHc----CCceEEeccccccccCCCCC-chhhHHHHHHHHHHHhhcccccCce
Q 044198 252 LCINGPEIMSKMAGESESNLREAFNVAEKN----APSIIFIDEIDSIAPKREKT-HGEVEKRIVSQLLTLMDGMKSRAHV 326 (772)
Q Consensus 252 ~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~----~p~il~iDEid~l~~~~~~~-~~~~~~~v~~~L~~lld~~~~~~~v 326 (772)
+.+.++++.++|.|+.+..++.+|+.+... .|+|+||||+|.++.+++.. .++.+.+++.+|++.||++....++
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 677788899999999999999999988763 69999999999999877543 3456788999999999999888899
Q ss_pred EEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhcc-CCcccccchhHHHHHhcCCchhhHHHHHHHHHH
Q 044198 327 MVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKN-MKLAEDVNLETVARETHGFVGADLAALCTEGAM 405 (772)
Q Consensus 327 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~-~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 405 (772)
++|+|||+++.|||++.|||||+..|+|+.|+.++|.+||+.++.. +++ ......+.|++++++..+++++..
T Consensus 335 iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l------~~~l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 335 IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL------DADLAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc------hHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988754 333 222345799999999999999865
Q ss_pred Hhh
Q 044198 406 QCI 408 (772)
Q Consensus 406 ~~~ 408 (772)
..+
T Consensus 409 ~~~ 411 (512)
T TIGR03689 409 HLY 411 (512)
T ss_pred HHh
Confidence 444
No 66
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=9.1e-31 Score=300.47 Aligned_cols=243 Identities=43% Similarity=0.735 Sum_probs=216.5
Q ss_pred CCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 044198 184 DDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKM 263 (772)
Q Consensus 184 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~ 263 (772)
..++|+|++|+++.++.+.+++.+ +..++.+..++...++|+||+||||||||++|+++|++++.+++.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 467899999999999999999887 7888899999999999999999999999999999999999999999999998888
Q ss_pred ccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCC---chhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCCh
Q 044198 264 AGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKT---HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDP 340 (772)
Q Consensus 264 ~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~ 340 (772)
.+.....++.+|+.+....||||||||+|.++..++.. .......++.+|+..+|++..+.+++||++||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 88888899999999999999999999999998766432 223345678889999999888889999999999999999
Q ss_pred hhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccccc
Q 044198 341 ALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEED 420 (772)
Q Consensus 341 al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 420 (772)
+++|+|||++.+.++.|+.++|.+||+.+++...+..+.++..+|..|.||+++||..++++|+..+.++..
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~-------- 408 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKK-------- 408 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC--------
Confidence 999999999999999999999999999999887777888999999999999999999999999887765432
Q ss_pred hhhHhhhhhhhccchhhhhhhhhc
Q 044198 421 TIDAEVLSSMYVTNENLNAAVAIT 444 (772)
Q Consensus 421 ~~~~~~~~~~~v~~~d~~~al~~~ 444 (772)
..++.+++..|+..+
T Consensus 409 ---------~~It~~dl~~Ai~rv 423 (638)
T CHL00176 409 ---------ATITMKEIDTAIDRV 423 (638)
T ss_pred ---------CCcCHHHHHHHHHHH
Confidence 236677888877654
No 67
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.97 E-value=5.5e-29 Score=298.11 Aligned_cols=455 Identities=22% Similarity=0.330 Sum_probs=297.2
Q ss_pred CccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEEe
Q 044198 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET----------GCYFLCIN 255 (772)
Q Consensus 186 ~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l----------~~~~~~v~ 255 (772)
-.++++.|.+++++++.+++.. ....+++|+||||||||++++.+|..+ +..++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3577899999999999888754 235689999999999999999999876 36788999
Q ss_pred chhhh--hhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeC
Q 044198 256 GPEIM--SKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATN 333 (772)
Q Consensus 256 ~~~~~--~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn 333 (772)
...+. .+|.|+++.+++.+|+.+....++||||||+|.+...++...+ . .+.+.|. ..-.++.+.+||+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~-~--~~a~lLk----p~l~rg~l~~IgaTt 315 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA-I--DAANILK----PALARGELQCIGATT 315 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc-c--cHHHHhH----HHHhCCCcEEEEeCC
Confidence 88776 4688999999999999998888899999999999876543221 1 1222233 333467899999999
Q ss_pred CCC-----CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhc------cCCcccccchhHHHHHhcCCchh-----hHH
Q 044198 334 RPN-----SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTK------NMKLAEDVNLETVARETHGFVGA-----DLA 397 (772)
Q Consensus 334 ~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~------~~~l~~~~~l~~la~~t~g~~~~-----dl~ 397 (772)
..+ ..|+++.+ ||.. |.++.|+.++...|++.... .+.+. +..+..++..+.+|.+. -..
T Consensus 316 ~~ey~~~ie~D~aL~r--Rf~~-I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~-deal~~i~~ls~~yi~~r~lPdkai 391 (821)
T CHL00095 316 LDEYRKHIEKDPALER--RFQP-VYVGEPSVEETIEILFGLRSRYEKHHNLSIS-DKALEAAAKLSDQYIADRFLPDKAI 391 (821)
T ss_pred HHHHHHHHhcCHHHHh--cceE-EecCCCCHHHHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCccccCchHHH
Confidence 874 57899998 9975 78999999999888875432 22222 33467777777777653 233
Q ss_pred HHHHHHHHHh-hhhhccc--cc----------cc------cch-------------hhHhh--------------hhhhh
Q 044198 398 ALCTEGAMQC-IREKMDL--ID----------LE------EDT-------------IDAEV--------------LSSMY 431 (772)
Q Consensus 398 ~l~~~a~~~~-~~~~~~~--~~----------~~------~~~-------------~~~~~--------------~~~~~ 431 (772)
.++.+|+... +...... .. .+ +.. ..... .....
T Consensus 392 dlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (821)
T CHL00095 392 DLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPV 471 (821)
T ss_pred HHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCc
Confidence 4444443221 1100000 00 00 000 00000 00022
Q ss_pred ccchhhhhhhhhcCcccchhh-------hcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCC----CCCCceE
Q 044198 432 VTNENLNAAVAITSPSALREI-------AVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGM----SPSRGVL 500 (772)
Q Consensus 432 v~~~d~~~al~~~~ps~~~~~-------~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~~iL 500 (772)
++.+|+...+........... .......--+.+.|++.+.+.+...+... +.|+ +|...+|
T Consensus 472 v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~l 543 (821)
T CHL00095 472 VTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFL 543 (821)
T ss_pred cCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEE
Confidence 444444444433221111000 00001111245778888888877766431 1222 2334589
Q ss_pred EeCCCCCchhHHHHHHHHHh---CCcEEEEecccchh-----cccccchH-----HHHHHHHHHHhCCCeEEEEcCchhh
Q 044198 501 FYGPPGCGKTLLAKAIANEC---QANFISIKGPELLT-----MWFGESEA-----NVRDVFDKARQSAPCVLFFDELDSI 567 (772)
Q Consensus 501 l~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~-----~~vg~se~-----~i~~vf~~a~~~~p~ilfiDEid~l 567 (772)
|+||||||||++|+++|..+ ..+++.++++++.. +++|.... ....+....+..+.+|++|||+|.+
T Consensus 544 f~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 544 FSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred EECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC
Confidence 99999999999999999987 46789999887632 22332211 1234566666777799999999987
Q ss_pred hhccCCCCCCCCchhHHHHHHHHHhcCCC---------CCCcEEEEeecCCCCC--------------------------
Q 044198 568 AIQRGSSVGDGGGVDRIVNQLLTEMDGLS---------AKKTVFVIGATNRPDM-------------------------- 612 (772)
Q Consensus 568 ~~~r~~~~~~~~~~~~~~~~lL~~ld~~~---------~~~~v~vi~aTn~~~~-------------------------- 612 (772)
+..+.+.||+.||... ...+.++|+|||....
T Consensus 624 -------------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~ 690 (821)
T CHL00095 624 -------------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRL 690 (821)
T ss_pred -------------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHH
Confidence 4678899999998642 2467899999995321
Q ss_pred -----------CCccccCCCCccccccCCCCCHHHHHHHHHHhhccC-------CCC---CcccHHHHHHHc--CCCCHH
Q 044198 613 -----------IDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKS-------PVS---KDIDLKAIAKYT--HGFSGA 669 (772)
Q Consensus 613 -----------ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~-------~~~---~~~~~~~la~~~--~g~sg~ 669 (772)
+.|++++ |+|.+|.|.+.+.++..+|++..+.+. ++. ++.-.+.|++.. ..|-.+
T Consensus 691 ~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR 768 (821)
T CHL00095 691 SNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGAR 768 (821)
T ss_pred HHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChh
Confidence 2246676 999999999999999999998777542 222 222255666642 345578
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044198 670 DITEICQRACKCAIREEI 687 (772)
Q Consensus 670 di~~l~~~a~~~a~~~~~ 687 (772)
.|+.+++.-...++.+.+
T Consensus 769 ~l~r~i~~~i~~~l~~~~ 786 (821)
T CHL00095 769 PLRRAIMRLLEDPLAEEV 786 (821)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 888888887777776655
No 68
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.97 E-value=1.2e-28 Score=293.26 Aligned_cols=455 Identities=19% Similarity=0.283 Sum_probs=284.0
Q ss_pred CCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC----------CeEEE
Q 044198 184 DDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG----------CYFLC 253 (772)
Q Consensus 184 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~----------~~~~~ 253 (772)
.+-.++++.|.++.+.++.+.+.. ....+++|+||||||||++++.+|..+. ..++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 345677899999986666555533 2245799999999999999999999762 45666
Q ss_pred Eechhhh--hhcccchHHHHHHHHHHHHH-cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEE
Q 044198 254 INGPEIM--SKMAGESESNLREAFNVAEK-NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIG 330 (772)
Q Consensus 254 v~~~~~~--~~~~g~~~~~l~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~ 330 (772)
++...+. ..+.|+.+..++.+|+.+.. ..+.||||||+|.+...++.... . ...+.|.. ...++.+.+||
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~-~--d~~n~Lkp----~l~~G~l~~Ig 321 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ-G--DAANLLKP----ALARGELRTIA 321 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc-c--cHHHHhhH----HhhCCCeEEEE
Confidence 7666655 36789999999999998865 46789999999999876543211 1 12222333 33567899999
Q ss_pred eeCCCC-----CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-----cccchhHHHHHhcCCchh-----h
Q 044198 331 ATNRPN-----SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-----EDVNLETVARETHGFVGA-----D 395 (772)
Q Consensus 331 atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-----~~~~l~~la~~t~g~~~~-----d 395 (772)
||++.+ .+|++|.| ||. .|.++.|+.+++.+||+.+.+..... .+..+..++..+++|... -
T Consensus 322 aTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDK 398 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDK 398 (852)
T ss_pred ecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccH
Confidence 998753 58999999 996 69999999999999987655433211 233577778888877643 2
Q ss_pred HHHHHHHHHHHh-hhhhccc-------------------cccc-----cch-----hhH-------hh------------
Q 044198 396 LAALCTEGAMQC-IREKMDL-------------------IDLE-----EDT-----IDA-------EV------------ 426 (772)
Q Consensus 396 l~~l~~~a~~~~-~~~~~~~-------------------~~~~-----~~~-----~~~-------~~------------ 426 (772)
...++.+|+... +...... ...+ ... ... +.
T Consensus 399 AIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (852)
T TIGR03345 399 AVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKE 478 (852)
T ss_pred HHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444432211 1100000 0000 000 000 00
Q ss_pred -hhh--------------------------------------------hhccchhhhhhhhhcCcccchhh-------hc
Q 044198 427 -LSS--------------------------------------------MYVTNENLNAAVAITSPSALREI-------AV 454 (772)
Q Consensus 427 -~~~--------------------------------------------~~v~~~d~~~al~~~~ps~~~~~-------~~ 454 (772)
... ..++.+++...+........... ..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~ 558 (852)
T TIGR03345 479 LVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVL 558 (852)
T ss_pred HHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchhhchhHHHHHH
Confidence 000 00111111111111100000000 00
Q ss_pred ccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCC----CCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEE
Q 044198 455 EVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGM----SPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISI 527 (772)
Q Consensus 455 ~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v 527 (772)
.....--..+.|++.+.+.+.+.+... +.|+ +|...+||+||||||||.+|+++|..+ ...++.+
T Consensus 559 ~l~~~L~~~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~ 630 (852)
T TIGR03345 559 SLPDRLAERVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITI 630 (852)
T ss_pred HHHHHhcCeEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEE
Confidence 000001134567777766666655431 1122 233348999999999999999999988 4578999
Q ss_pred ecccchhc------------ccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCC
Q 044198 528 KGPELLTM------------WFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGL 595 (772)
Q Consensus 528 ~~~~l~~~------------~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~ 595 (772)
+++++... |+|..+. ..+.+..++.+.+||+|||||.. +..+.+.|++.||..
T Consensus 631 dmse~~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-------------~~~v~~~Llq~ld~g 695 (852)
T TIGR03345 631 NMSEFQEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-------------HPDVLELFYQVFDKG 695 (852)
T ss_pred eHHHhhhhhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-------------CHHHHHHHHHHhhcc
Confidence 98876432 4443322 12445556677799999999865 366788899999864
Q ss_pred C---------CCCcEEEEeecCCCC-----------------------------CCCccccCCCCccccccCCCCCHHHH
Q 044198 596 S---------AKKTVFVIGATNRPD-----------------------------MIDPALLRPGRLDQLIYIPLPDEHSR 637 (772)
Q Consensus 596 ~---------~~~~v~vi~aTn~~~-----------------------------~ld~allrpgRf~~~i~~~~p~~~~r 637 (772)
. +..+.++|+|||... .+.|++++ |++ +|.|.+.+.++.
T Consensus 696 ~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l 772 (852)
T TIGR03345 696 VMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVL 772 (852)
T ss_pred eeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHH
Confidence 2 225789999999521 14567776 998 899999999999
Q ss_pred HHHHHHhhccC--------CCC---CcccHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH
Q 044198 638 LQIFKSCLRKS--------PVS---KDIDLKAIAKYTH--GFSGADITEICQRACKCAIREEI 687 (772)
Q Consensus 638 ~~Il~~~~~~~--------~~~---~~~~~~~la~~~~--g~sg~di~~l~~~a~~~a~~~~~ 687 (772)
.+|++..+.+. ++. ++.-++.|++... .|-.+.++.+++.-...++.+.+
T Consensus 773 ~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~ 835 (852)
T TIGR03345 773 AAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQI 835 (852)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 99998776442 222 2223566776553 25578899988887777777655
No 69
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.97 E-value=5.8e-28 Score=288.53 Aligned_cols=457 Identities=20% Similarity=0.308 Sum_probs=276.2
Q ss_pred CCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 044198 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET----------GCYFLCI 254 (772)
Q Consensus 185 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l----------~~~~~~v 254 (772)
+-.++++.|.++.+.++.+.+.. ....+++|+||||||||++++.+|..+ +.+++.+
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 44577899999987777666643 224579999999999999999999987 6678888
Q ss_pred echhhh--hhcccchHHHHHHHHHHHHH-cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEe
Q 044198 255 NGPEIM--SKMAGESESNLREAFNVAEK-NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGA 331 (772)
Q Consensus 255 ~~~~~~--~~~~g~~~~~l~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~a 331 (772)
+...+. .++.|+.+..++.+|..... ..++||||||+|.+...+...++ . ...+.| ...-.++.+.+||+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~-~--d~~~~l----kp~l~~g~l~~Iga 313 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA-M--DAGNML----KPALARGELHCVGA 313 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccc-h--hHHHHh----cchhhcCCCeEEEc
Confidence 777765 45789999999999998654 56889999999999876543222 1 112222 23335788999999
Q ss_pred eCCCC-----CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccc-----cchhHHHHHhcCCch-----hhH
Q 044198 332 TNRPN-----SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAED-----VNLETVARETHGFVG-----ADL 396 (772)
Q Consensus 332 tn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~-----~~l~~la~~t~g~~~-----~dl 396 (772)
|+..+ .+|+++.| ||+. |.++.|+.+++..||+.....+....+ ..+...+..+++|.. ...
T Consensus 314 Tt~~e~r~~~~~d~al~r--Rf~~-i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkA 390 (857)
T PRK10865 314 TTLDEYRQYIEKDAALER--RFQK-VFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKA 390 (857)
T ss_pred CCCHHHHHHhhhcHHHHh--hCCE-EEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHH
Confidence 99886 48999999 9975 889999999999999877654433322 223444456666552 112
Q ss_pred HHHHHHHHHHh-hh------------hhcc-------ccccccc-------------------hhh---------Hhhh-
Q 044198 397 AALCTEGAMQC-IR------------EKMD-------LIDLEED-------------------TID---------AEVL- 427 (772)
Q Consensus 397 ~~l~~~a~~~~-~~------------~~~~-------~~~~~~~-------------------~~~---------~~~~- 427 (772)
..++..++... +. +... ....+.. ... .+..
T Consensus 391 i~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~ 470 (857)
T PRK10865 391 IDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLS 470 (857)
T ss_pred HHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222221100 00 0000 0000000 000 0000
Q ss_pred ---------hh-----------------------------------------------hhccchhhhhhhhhcCcccchh
Q 044198 428 ---------SS-----------------------------------------------MYVTNENLNAAVAITSPSALRE 451 (772)
Q Consensus 428 ---------~~-----------------------------------------------~~v~~~d~~~al~~~~ps~~~~ 451 (772)
.. ..++.+|+...+..........
T Consensus 471 ~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~ 550 (857)
T PRK10865 471 GTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSR 550 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHHHHCCCchh
Confidence 00 0011111111111100000000
Q ss_pred h-------hcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCC----CCCCceEEeCCCCCchhHHHHHHHHHh
Q 044198 452 I-------AVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGM----SPSRGVLFYGPPGCGKTLLAKAIANEC 520 (772)
Q Consensus 452 ~-------~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~~iLl~GppGtGKT~la~alA~~~ 520 (772)
. .......-.+.+.|++.+.+.+...+... +.|+ +|...+||+||||||||++|+++|..+
T Consensus 551 ~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 551 MLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred hhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 0 00000011224556666666555554321 1122 223468999999999999999999876
Q ss_pred ---CCcEEEEecccchhc-----ccccchHH-----HHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHH
Q 044198 521 ---QANFISIKGPELLTM-----WFGESEAN-----VRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQ 587 (772)
Q Consensus 521 ---~~~~i~v~~~~l~~~-----~vg~se~~-----i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~ 587 (772)
+.+++.++++++... .+|..... -..+....+..+.++|||||++.+ ...+.+.
T Consensus 623 ~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-------------~~~v~~~ 689 (857)
T PRK10865 623 FDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-------------HPDVFNI 689 (857)
T ss_pred hcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-------------CHHHHHH
Confidence 457899998876432 22221111 112233334444589999999876 3567888
Q ss_pred HHHHhcCCC---------CCCcEEEEeecCCCC-------------------------CCCccccCCCCccccccCCCCC
Q 044198 588 LLTEMDGLS---------AKKTVFVIGATNRPD-------------------------MIDPALLRPGRLDQLIYIPLPD 633 (772)
Q Consensus 588 lL~~ld~~~---------~~~~v~vi~aTn~~~-------------------------~ld~allrpgRf~~~i~~~~p~ 633 (772)
|++.|+... ...+.++|+|||... .+.|+|+. |+|.++.|.+++
T Consensus 690 Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~ 767 (857)
T PRK10865 690 LLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLG 767 (857)
T ss_pred HHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCC
Confidence 999887531 235678999999731 24467887 999999999999
Q ss_pred HHHHHHHHHHhhccC-------CCCCccc---HHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH
Q 044198 634 EHSRLQIFKSCLRKS-------PVSKDID---LKAIAKYT--HGFSGADITEICQRACKCAIREEI 687 (772)
Q Consensus 634 ~~~r~~Il~~~~~~~-------~~~~~~~---~~~la~~~--~g~sg~di~~l~~~a~~~a~~~~~ 687 (772)
.+...+|++.++.+. .+.-.++ ++.|++.. ..|-.+.|+.+++.-...++.+.+
T Consensus 768 ~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~i 833 (857)
T PRK10865 768 EQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQI 833 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHH
Confidence 999999988777542 2222223 44455422 223468899888888777776655
No 70
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.97 E-value=8.6e-28 Score=288.49 Aligned_cols=458 Identities=21% Similarity=0.331 Sum_probs=288.8
Q ss_pred CCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 044198 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET----------GCYFLCI 254 (772)
Q Consensus 185 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l----------~~~~~~v 254 (772)
+-.++.+.|.++++.++.+.+.. ....+++|+||||||||++++.+|..+ +.+++.+
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 34567899999987777666543 224578999999999999999999876 5677888
Q ss_pred echhhh--hhcccchHHHHHHHHHHHHH-cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEe
Q 044198 255 NGPEIM--SKMAGESESNLREAFNVAEK-NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGA 331 (772)
Q Consensus 255 ~~~~~~--~~~~g~~~~~l~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~a 331 (772)
+...+. .+|.|+.+..++.+|..+.. ..+.||||||+|.+...+..... ....+.|. ....++.+.+||+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~~~Lk----~~l~~g~i~~Iga 308 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA---MDAGNMLK----PALARGELHCIGA 308 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch---hHHHHHhc----hhhhcCceEEEEe
Confidence 776665 46788999999999998865 45889999999999865432211 11223333 2335678999999
Q ss_pred eCCCC-----CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccc-----cchhHHHHHhcCCchh-----hH
Q 044198 332 TNRPN-----SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAED-----VNLETVARETHGFVGA-----DL 396 (772)
Q Consensus 332 tn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~-----~~l~~la~~t~g~~~~-----dl 396 (772)
|+..+ .+|+++.| ||.. |.++.|+.+++..||+.....+..... ..+...+..+++|... --
T Consensus 309 Tt~~e~r~~~~~d~al~r--Rf~~-i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkA 385 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALER--RFQP-VFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKA 385 (852)
T ss_pred CcHHHHHHHhhcCHHHHh--cCCE-EEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHH
Confidence 99873 57999999 9975 899999999999999977665544333 2456666777777543 23
Q ss_pred HHHHHHHHHHh-hh------------hhcccc-------ccccc------------hh--------------hHhh--h-
Q 044198 397 AALCTEGAMQC-IR------------EKMDLI-------DLEED------------TI--------------DAEV--L- 427 (772)
Q Consensus 397 ~~l~~~a~~~~-~~------------~~~~~~-------~~~~~------------~~--------------~~~~--~- 427 (772)
..++.+|+... +. +....+ ....+ .+ ..+. .
T Consensus 386 idlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (852)
T TIGR03346 386 IDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQ 465 (852)
T ss_pred HHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443211 10 000000 00000 00 0000 0
Q ss_pred ---------h-------------------------------------------------hhhccchhhhhhhhhcC--cc
Q 044198 428 ---------S-------------------------------------------------SMYVTNENLNAAVAITS--PS 447 (772)
Q Consensus 428 ---------~-------------------------------------------------~~~v~~~d~~~al~~~~--ps 447 (772)
. ...++.+++...+.... |.
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~tgip~ 545 (852)
T TIGR03346 466 GIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGIPV 545 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhcCCCc
Confidence 0 00011111111111110 00
Q ss_pred c-chh----hhcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCC----CCCCceEEeCCCCCchhHHHHHHHH
Q 044198 448 A-LRE----IAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGM----SPSRGVLFYGPPGCGKTLLAKAIAN 518 (772)
Q Consensus 448 ~-~~~----~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~~iLl~GppGtGKT~la~alA~ 518 (772)
. +.. ........-...+.|++.+.+.+...+... ..|+ +|...+||+||||||||++|+++|.
T Consensus 546 ~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~ 617 (852)
T TIGR03346 546 SKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE 617 (852)
T ss_pred ccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 0 000 000000111234667777766666655431 1122 2445699999999999999999998
Q ss_pred Hh---CCcEEEEecccchh-----cccccchHH-----HHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHH
Q 044198 519 EC---QANFISIKGPELLT-----MWFGESEAN-----VRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIV 585 (772)
Q Consensus 519 ~~---~~~~i~v~~~~l~~-----~~vg~se~~-----i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~ 585 (772)
.+ +.+++.++++++.. +++|..... ...+....+..+.+|||||||+.+ +..+.
T Consensus 618 ~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-------------~~~v~ 684 (852)
T TIGR03346 618 FLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-------------HPDVF 684 (852)
T ss_pred HhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-------------CHHHH
Confidence 87 46899999887643 223322111 123444455566689999999977 46688
Q ss_pred HHHHHHhcCCC---------CCCcEEEEeecCCCCC-------------------------CCccccCCCCccccccCCC
Q 044198 586 NQLLTEMDGLS---------AKKTVFVIGATNRPDM-------------------------IDPALLRPGRLDQLIYIPL 631 (772)
Q Consensus 586 ~~lL~~ld~~~---------~~~~v~vi~aTn~~~~-------------------------ld~allrpgRf~~~i~~~~ 631 (772)
+.||+.|+... +..+.+||+|||.... +.|.|+. |||.++.|.+
T Consensus 685 ~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~P 762 (852)
T TIGR03346 685 NVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHP 762 (852)
T ss_pred HHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCC
Confidence 99999997542 2357889999998321 3366776 9999999999
Q ss_pred CCHHHHHHHHHHhhcc-------CCCC---CcccHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHH
Q 044198 632 PDEHSRLQIFKSCLRK-------SPVS---KDIDLKAIAKYT--HGFSGADITEICQRACKCAIREEIE 688 (772)
Q Consensus 632 p~~~~r~~Il~~~~~~-------~~~~---~~~~~~~la~~~--~g~sg~di~~l~~~a~~~a~~~~~~ 688 (772)
++.+...+|+...+.. ..+. ++.-++.|++.. ..+..+.|+++++.....++.+.+-
T Consensus 763 L~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l 831 (852)
T TIGR03346 763 LGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKIL 831 (852)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999877642 1111 223355666652 2567899999999998888877663
No 71
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.7e-28 Score=273.92 Aligned_cols=457 Identities=21% Similarity=0.314 Sum_probs=300.3
Q ss_pred CCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 044198 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET----------GCYFLCI 254 (772)
Q Consensus 185 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l----------~~~~~~v 254 (772)
.-.++.+.|-+++++++.+.+.-. ...+-+|+|+||+|||.++..+|... +..++.+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~RR-------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSRR-------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhcc-------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 456778999999988887777542 24567889999999999999999865 3456666
Q ss_pred echhhh--hhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEee
Q 044198 255 NGPEIM--SKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGAT 332 (772)
Q Consensus 255 ~~~~~~--~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~at 332 (772)
+-..+. .+|.|+.+++++.++++.....+.||||||+|.+.......++.+ ... +++...-.++.+.+||||
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~--DAa----NiLKPaLARGeL~~IGAT 306 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAM--DAA----NLLKPALARGELRCIGAT 306 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccccc--chh----hhhHHHHhcCCeEEEEec
Confidence 666555 478999999999999999988899999999999987765432111 112 233333357889999999
Q ss_pred CCCC-----CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCccccc-----chhHHHHHhcCCch-----hhHH
Q 044198 333 NRPN-----SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDV-----NLETVARETHGFVG-----ADLA 397 (772)
Q Consensus 333 n~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~-----~l~~la~~t~g~~~-----~dl~ 397 (772)
+..+ .=|+||.| ||.. |.+..|+.++-..||+-....+.....+ -+...+..++.|.. .--.
T Consensus 307 T~~EYRk~iEKD~AL~R--RFQ~-V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAI 383 (786)
T COG0542 307 TLDEYRKYIEKDAALER--RFQK-VLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAI 383 (786)
T ss_pred cHHHHHHHhhhchHHHh--cCce-eeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHH
Confidence 7653 34899999 9987 8999999999999998655443333222 24455555555543 3334
Q ss_pred HHHHHHHHHhhhhhccccc------------cc-------c-----chhhH-------------hhhhhhhccchhhhhh
Q 044198 398 ALCTEGAMQCIREKMDLID------------LE-------E-----DTIDA-------------EVLSSMYVTNENLNAA 440 (772)
Q Consensus 398 ~l~~~a~~~~~~~~~~~~~------------~~-------~-----~~~~~-------------~~~~~~~v~~~d~~~a 440 (772)
.++.+|+...--....... .+ . ..+.. ..... .++.+++...
T Consensus 384 DLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~Ia~v 462 (786)
T COG0542 384 DLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEA-EVDEDDIAEV 462 (786)
T ss_pred HHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhh-ccCHHHHHHH
Confidence 4555543322111000000 00 0 00000 00000 1333444444
Q ss_pred hhhcCcccch-------hhhcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCC----CCCCceEEeCCCCCch
Q 044198 441 VAITSPSALR-------EIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGM----SPSRGVLFYGPPGCGK 509 (772)
Q Consensus 441 l~~~~ps~~~-------~~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~~iLl~GppGtGK 509 (772)
+......... +.....+..--..+.|++++...+.+.+.. .+.|+ +|..++||.||+|+||
T Consensus 463 v~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGK 534 (786)
T COG0542 463 VARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGK 534 (786)
T ss_pred HHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccH
Confidence 4433211111 111122222334578888888887776653 23344 3556799999999999
Q ss_pred hHHHHHHHHHhC---CcEEEEecccchhc-----ccccchHHH-----HHHHHHHHhCCCeEEEEcCchhhhhccCCCCC
Q 044198 510 TLLAKAIANECQ---ANFISIKGPELLTM-----WFGESEANV-----RDVFDKARQSAPCVLFFDELDSIAIQRGSSVG 576 (772)
Q Consensus 510 T~la~alA~~~~---~~~i~v~~~~l~~~-----~vg~se~~i-----~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~ 576 (772)
|.||+++|..+. ..++++++||+..+ .+|..+.+| ..+-+..++.+.|||+||||+.-
T Consensus 535 TELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA--------- 605 (786)
T COG0542 535 TELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA--------- 605 (786)
T ss_pred HHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc---------
Confidence 999999999985 78999999999744 333333322 34556667777899999999876
Q ss_pred CCCchhHHHHHHHHHhcCCC---------CCCcEEEEeecCCC----------------------------CCCCccccC
Q 044198 577 DGGGVDRIVNQLLTEMDGLS---------AKKTVFVIGATNRP----------------------------DMIDPALLR 619 (772)
Q Consensus 577 ~~~~~~~~~~~lL~~ld~~~---------~~~~v~vi~aTn~~----------------------------~~ld~allr 619 (772)
++.++|.||+.||... ..++.++|+|||-- ..+.|++++
T Consensus 606 ----HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN 681 (786)
T COG0542 606 ----HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN 681 (786)
T ss_pred ----CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh
Confidence 5789999999999752 23678999999942 123467887
Q ss_pred CCCccccccCCCCCHHHHHHHHHHhhccC-------CCC---CcccHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH
Q 044198 620 PGRLDQLIYIPLPDEHSRLQIFKSCLRKS-------PVS---KDIDLKAIAKYT--HGFSGADITEICQRACKCAIREEI 687 (772)
Q Consensus 620 pgRf~~~i~~~~p~~~~r~~Il~~~~~~~-------~~~---~~~~~~~la~~~--~g~sg~di~~l~~~a~~~a~~~~~ 687 (772)
|+|.+|.|.+.+.+...+|+...+.+. .+. ++.-.+.|++.. ..|-++-|+.+++.-....+.+.+
T Consensus 682 --Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~i 759 (786)
T COG0542 682 --RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEI 759 (786)
T ss_pred --hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877432 222 122245666544 356677888777776666665544
No 72
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=5.4e-29 Score=289.57 Aligned_cols=244 Identities=41% Similarity=0.682 Sum_probs=217.3
Q ss_pred CCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcc
Q 044198 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMA 264 (772)
Q Consensus 185 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~~ 264 (772)
...|+++.|++..++.+.+++.+ +..+..+..++...++|+||+||||||||+++++++++++.+++.++++++...+.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 34688999999999999999987 56677788888888999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHcCCceEEeccccccccCCCCC---chhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChh
Q 044198 265 GESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKT---HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPA 341 (772)
Q Consensus 265 g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~a 341 (772)
+.....++.+|..+....|+|+||||+|.+..+++.. ......+++++|+..||++.....+++|+|||+++.||++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 9999999999999999999999999999998876542 2234457889999999999888899999999999999999
Q ss_pred hhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccccch
Q 044198 342 LRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEEDT 421 (772)
Q Consensus 342 l~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~ 421 (772)
++|+|||++.+.++.|+.++|.+||+.+.+..++..++++..+++.|.||+++|+..+|++|+..+.+...
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~--------- 377 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK--------- 377 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCC---------
Confidence 99999999999999999999999999999999988889999999999999999999999999988876532
Q ss_pred hhHhhhhhhhccchhhhhhhhhcCc
Q 044198 422 IDAEVLSSMYVTNENLNAAVAITSP 446 (772)
Q Consensus 422 ~~~~~~~~~~v~~~d~~~al~~~~p 446 (772)
..++..|+..++..+.+
T Consensus 378 --------~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 378 --------RVVSMVEFEKAKDKIMM 394 (644)
T ss_pred --------CcccHHHHHHHHHHHhc
Confidence 24667788887765543
No 73
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=2.3e-29 Score=301.13 Aligned_cols=200 Identities=22% Similarity=0.301 Sum_probs=169.4
Q ss_pred cccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc----------cc-----------
Q 044198 207 LPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKM----------AG----------- 265 (772)
Q Consensus 207 ~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~----------~g----------- 265 (772)
.|.+.++....+|+.+++||||+||||||||.||+++|++.+.+++.+++++++.++ .|
T Consensus 1614 ~~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~ 1693 (2281)
T CHL00206 1614 FPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDI 1693 (2281)
T ss_pred CcccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccc
Confidence 445556777899999999999999999999999999999999999999999998654 11
Q ss_pred --------------------ch--HHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc--
Q 044198 266 --------------------ES--ESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK-- 321 (772)
Q Consensus 266 --------------------~~--~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~-- 321 (772)
.. ...++.+|+.|+..+||||||||||.++.+.. ....+.+|++.|++..
T Consensus 1694 ~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~~ 1767 (2281)
T CHL00206 1694 DRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCER 1767 (2281)
T ss_pred ccccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhcccccc
Confidence 12 23488899999999999999999999987521 1123788899998763
Q ss_pred -ccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHH--hccCCcccc-cchhHHHHHhcCCchhhHH
Q 044198 322 -SRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIH--TKNMKLAED-VNLETVARETHGFVGADLA 397 (772)
Q Consensus 322 -~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~--~~~~~l~~~-~~l~~la~~t~g~~~~dl~ 397 (772)
...+|+||||||+|+.|||||+|||||++.|+++.|+..+|.+++..+ .+++.+..+ +++..+|+.|.||+||||.
T Consensus 1768 ~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLa 1847 (2281)
T CHL00206 1768 CSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLV 1847 (2281)
T ss_pred CCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHH
Confidence 345799999999999999999999999999999999999999988754 455566543 5799999999999999999
Q ss_pred HHHHHHHHHhhhhhc
Q 044198 398 ALCTEGAMQCIREKM 412 (772)
Q Consensus 398 ~l~~~a~~~~~~~~~ 412 (772)
++|++|++.++++..
T Consensus 1848 nLvNEAaliAirq~k 1862 (2281)
T CHL00206 1848 ALTNEALSISITQKK 1862 (2281)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999988753
No 74
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.1e-29 Score=269.33 Aligned_cols=261 Identities=40% Similarity=0.626 Sum_probs=221.4
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
...++.|+|++|++..++.+.+++.+|+..+.+|..+- .+++++||.||||+|||+|++++|.+.+..|+.+.++.+.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 44679999999999999999999999999999998653 56789999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccc--cCceEEEEeeCCCCCCC
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKS--RAHVMVIGATNRPNSID 339 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~--~~~v~vI~atn~~~~ld 339 (772)
+|+|+.++.++.+|+-|+..+|+|+||||+|.++.++.....+..+++..+++-.+++... ..+|+||||||.|..+|
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 9999999999999999999999999999999999999766677777888887776666543 45799999999999999
Q ss_pred hhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCC-cccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccc
Q 044198 340 PALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMK-LAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLE 418 (772)
Q Consensus 340 ~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~-l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 418 (772)
.+++| ||...+++|.|+.+.|..+|+..+...+ ...+.+++.+++.|+||++.|+.++|++|++.-++........
T Consensus 305 ea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~- 381 (428)
T KOG0740|consen 305 EAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDL- 381 (428)
T ss_pred HHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhh-
Confidence 99999 9999999999999999999998876552 2345689999999999999999999999998766554332000
Q ss_pred cchhhHhhhhhhhccchhhhhhhhhcCcccc
Q 044198 419 EDTIDAEVLSSMYVTNENLNAAVAITSPSAL 449 (772)
Q Consensus 419 ~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~ 449 (772)
..+ .......++..||..++..+.|+..
T Consensus 382 -~~~--~~~~~r~i~~~df~~a~~~i~~~~s 409 (428)
T KOG0740|consen 382 -EFI--DADKIRPITYPDFKNAFKNIKPSVS 409 (428)
T ss_pred -hhc--chhccCCCCcchHHHHHHhhccccC
Confidence 011 1123455777888888888877643
No 75
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=7.7e-29 Score=257.94 Aligned_cols=190 Identities=22% Similarity=0.294 Sum_probs=159.6
Q ss_pred HHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHH-----cCCceEEecc
Q 044198 216 KALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEK-----NAPSIIFIDE 290 (772)
Q Consensus 216 ~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~-----~~p~il~iDE 290 (772)
..+++++|.+++||||||||||++|+++|++++.+++.++++++.++|.|++++.++++|+.|.. ..||||||||
T Consensus 141 ~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDE 220 (413)
T PLN00020 141 ALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFIND 220 (413)
T ss_pred hccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEeh
Confidence 34688999999999999999999999999999999999999999999999999999999999975 4699999999
Q ss_pred ccccccCCCCCchhhHHHHH-HHHHHHhhcc------------cccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCC
Q 044198 291 IDSIAPKREKTHGEVEKRIV-SQLLTLMDGM------------KSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVP 357 (772)
Q Consensus 291 id~l~~~~~~~~~~~~~~v~-~~L~~lld~~------------~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p 357 (772)
||.++++++.....+..+++ .+|++++|+. .....|.||+|||+++.|||+|+|+|||++.+ ..|
T Consensus 221 IDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lP 298 (413)
T PLN00020 221 LDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAP 298 (413)
T ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCC
Confidence 99999998765556655655 8999999863 23567999999999999999999999999965 589
Q ss_pred CHHHHHHHHHHHhccCCcccccchhHHHHHhcC----CchhhHHHHHHHHHHHhh
Q 044198 358 DEVGRLEVLRIHTKNMKLAEDVNLETVARETHG----FVGADLAALCTEGAMQCI 408 (772)
Q Consensus 358 ~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g----~~~~dl~~l~~~a~~~~~ 408 (772)
+.++|.+||+.+++...+. ..++..++..+.| |.|+-...+..++....+
T Consensus 299 d~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i 352 (413)
T PLN00020 299 TREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWI 352 (413)
T ss_pred CHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHH
Confidence 9999999999999987775 3567777776655 455555555555544333
No 76
>CHL00181 cbbX CbbX; Provisional
Probab=99.89 E-value=1.6e-22 Score=212.78 Aligned_cols=216 Identities=22% Similarity=0.298 Sum_probs=167.6
Q ss_pred cccccchHHHHHHHhhhccccCCchHHHhhcCCCCC---CceEEeCCCCCchhHHHHHHHHHhC-------CcEEEEecc
Q 044198 461 WADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPS---RGVLFYGPPGCGKTLLAKAIANECQ-------ANFISIKGP 530 (772)
Q Consensus 461 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~---~~iLl~GppGtGKT~la~alA~~~~-------~~~i~v~~~ 530 (772)
+.+++|++.+|+++.+.+.+ +.......+.|+.++ .+++|+||||||||++|+++|..+. .+++.++.+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 35799999999999998877 445566667777543 3589999999999999999998762 368999999
Q ss_pred cchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCC
Q 044198 531 ELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRP 610 (772)
Q Consensus 531 ~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 610 (772)
++.+.|+|+++..++.+|+.|.. +||||||+|.+...++ +......+++.|+..|+.. ..+++||+|++..
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~----~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~ 171 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDN----ERDYGSEAIEILLQVMENQ--RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCC----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcH
Confidence 99999999999889999988754 5999999999975432 2234678899999999854 3567888888643
Q ss_pred C-----CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHH------cCCCC-HHHHHHHHHH
Q 044198 611 D-----MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKY------THGFS-GADITEICQR 677 (772)
Q Consensus 611 ~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~------~~g~s-g~di~~l~~~ 677 (772)
. .++|++.+ ||+.+|+|++|+.+++.+|++.++++.... .+.....+... ...|. ++++++++..
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~ 249 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDR 249 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 2 34689998 999999999999999999999999765433 12223333332 23455 8999999999
Q ss_pred HHHHHHHHHHH
Q 044198 678 ACKCAIREEIE 688 (772)
Q Consensus 678 a~~~a~~~~~~ 688 (772)
|......+...
T Consensus 250 ~~~~~~~r~~~ 260 (287)
T CHL00181 250 ARMRQANRIFE 260 (287)
T ss_pred HHHHHHHHHHc
Confidence 98877766653
No 77
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.7e-23 Score=209.05 Aligned_cols=234 Identities=26% Similarity=0.398 Sum_probs=175.0
Q ss_pred ccccccchHHHHHHHhhhccccCCchHHHhhcC-----CCCCCceEEeCCCCCchhHHHHHHHHHhC---------CcEE
Q 044198 460 RWADIGGLDTVKRELQETVQYPVEHPEMFEKFG-----MSPSRGVLFYGPPGCGKTLLAKAIANECQ---------ANFI 525 (772)
Q Consensus 460 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~-----~~~~~~iLl~GppGtGKT~la~alA~~~~---------~~~i 525 (772)
-|+.+.--..+|+.|.......+. |.+.+ +...+-+||+||||||||+|+||+|..+. ..++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~----fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li 215 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALL----FSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI 215 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHH----HHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence 466666666677777665543322 22222 23455699999999999999999999873 3478
Q ss_pred EEecccchhcccccchHHHHHHHHHHHhC-----CCeEEEEcCchhhhhccCCCCCCCCc--hhHHHHHHHHHhcCCCCC
Q 044198 526 SIKGPELLTMWFGESEANVRDVFDKARQS-----APCVLFFDELDSIAIQRGSSVGDGGG--VDRIVNQLLTEMDGLSAK 598 (772)
Q Consensus 526 ~v~~~~l~~~~vg~se~~i~~vf~~a~~~-----~p~ilfiDEid~l~~~r~~~~~~~~~--~~~~~~~lL~~ld~~~~~ 598 (772)
.+++..++++|.++|.+.+..+|++.... .-..++|||+++|+..|.+..+.+++ .-|++|.+|++||.+...
T Consensus 216 EinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~ 295 (423)
T KOG0744|consen 216 EINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY 295 (423)
T ss_pred EEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999887542 23456799999999999554333333 679999999999999999
Q ss_pred CcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-----C-------------cccHHHHH
Q 044198 599 KTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-----K-------------DIDLKAIA 660 (772)
Q Consensus 599 ~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-----~-------------~~~~~~la 660 (772)
.+|++++|+|-.+.||.|+.. |-|-+.|+++|+.+.|.+|++.++.++-.. . +.....++
T Consensus 296 ~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~ 373 (423)
T KOG0744|consen 296 PNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILI 373 (423)
T ss_pred CCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHH
Confidence 999999999999999999997 999999999999999999999988553111 0 01123333
Q ss_pred HH-cCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhh
Q 044198 661 KY-THGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKY 720 (772)
Q Consensus 661 ~~-~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~ 720 (772)
+. +.|.||+-|+.+=--|... .. +..+|+..+|..|+.+
T Consensus 374 ~~~~~gLSGRtlrkLP~Laha~----y~-----------------~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 374 ELSTVGLSGRTLRKLPLLAHAE----YF-----------------RTFTVDLSNFLLALLE 413 (423)
T ss_pred HHhhcCCccchHhhhhHHHHHh----cc-----------------CCCccChHHHHHHHHH
Confidence 33 4788888887754433221 11 1237899999888754
No 78
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.7e-22 Score=214.25 Aligned_cols=223 Identities=21% Similarity=0.317 Sum_probs=173.3
Q ss_pred ccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchh
Q 044198 455 EVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 534 (772)
Q Consensus 455 ~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~ 534 (772)
+.| .+++.+.--.+.|+.+.+-+..+.+..+.|++.|....+|.|||||||||||+++.|+|+.+++..+-+..++.-
T Consensus 195 ~Hp-stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~- 272 (457)
T KOG0743|consen 195 PHP-STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK- 272 (457)
T ss_pred CCC-CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc-
Confidence 344 667778888899999999999999999999999999999999999999999999999999999999988887642
Q ss_pred cccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCC---CC--chhHHHHHHHHHhcCCCCCC--cEEEEeec
Q 044198 535 MWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGD---GG--GVDRIVNQLLTEMDGLSAKK--TVFVIGAT 607 (772)
Q Consensus 535 ~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~---~~--~~~~~~~~lL~~ld~~~~~~--~v~vi~aT 607 (772)
.... ++.+...+... +||+|++||.-+..++..... .. ...-.++-||+.+||+-+.. --+||+||
T Consensus 273 ----~n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 273 ----LDSD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred ----CcHH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEec
Confidence 2223 88888776555 699999999887655433211 11 13356889999999995544 68999999
Q ss_pred CCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcC--CCCHHHHHHHH-HH--HHHHH
Q 044198 608 NRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTH--GFSGADITEIC-QR--ACKCA 682 (772)
Q Consensus 608 n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~--g~sg~di~~l~-~~--a~~~a 682 (772)
|.++.|||||+||||+|.+|+++.-+.++-+.+++.++.-.. +..=+.++.+..+ ..|+||+.+.. .. .+..|
T Consensus 346 Nh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~ 423 (457)
T KOG0743|consen 346 NHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVA 423 (457)
T ss_pred CChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHH
Confidence 999999999999999999999999999999999999995422 1122334443333 36999998843 22 35555
Q ss_pred HHHHHH
Q 044198 683 IREEIE 688 (772)
Q Consensus 683 ~~~~~~ 688 (772)
++..+.
T Consensus 424 lk~Lv~ 429 (457)
T KOG0743|consen 424 LKGLVE 429 (457)
T ss_pred HHHHHH
Confidence 555443
No 79
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.5e-21 Score=201.40 Aligned_cols=211 Identities=25% Similarity=0.437 Sum_probs=158.7
Q ss_pred cccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcccccc
Q 044198 461 WADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES 540 (772)
Q Consensus 461 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~s 540 (772)
+++++-...+++.+.+.-...-. .+....|.+++|||||||||||++|+-+|...|..+-.+.|.|+.- .-.+.
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaN-----TK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~qa 427 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATAN-----TKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGAQA 427 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhcc-----cccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cchHH
Confidence 45555555555555443221100 0113356778999999999999999999999999998888888632 22334
Q ss_pred hHHHHHHHHHHHhCCC-eEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccC
Q 044198 541 EANVRDVFDKARQSAP-CVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLR 619 (772)
Q Consensus 541 e~~i~~vf~~a~~~~p-~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr 619 (772)
-.+|.++|++|.++.. -+|||||+|+++..|... ..++.....+|.||-.-- ...++++++.|||+|..+|.|+-.
T Consensus 428 VTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt-ymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D 504 (630)
T KOG0742|consen 428 VTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT-YMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND 504 (630)
T ss_pred HHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh-hhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh
Confidence 5679999999988765 478999999999998754 344456677888775533 456789999999999999999997
Q ss_pred CCCccccccCCCCCHHHHHHHHHHhhccCCCC----C-----------------------cccHHHHHHHcCCCCHHHHH
Q 044198 620 PGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS----K-----------------------DIDLKAIAKYTHGFSGADIT 672 (772)
Q Consensus 620 pgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~----~-----------------------~~~~~~la~~~~g~sg~di~ 672 (772)
|||.+|+||+|.+++|..++..++.++-+. . +.-+.+.|+.|+||||++|.
T Consensus 505 --Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREia 582 (630)
T KOG0742|consen 505 --RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIA 582 (630)
T ss_pred --hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHH
Confidence 999999999999999999999988664321 0 11256788999999999999
Q ss_pred HHHHHHHHHH
Q 044198 673 EICQRACKCA 682 (772)
Q Consensus 673 ~l~~~a~~~a 682 (772)
.++-.....+
T Consensus 583 kLva~vQAav 592 (630)
T KOG0742|consen 583 KLVASVQAAV 592 (630)
T ss_pred HHHHHHHHHH
Confidence 9886655443
No 80
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.87 E-value=9.6e-22 Score=207.20 Aligned_cols=213 Identities=21% Similarity=0.297 Sum_probs=167.9
Q ss_pred cccchHHHHHHHhhhccccCCchHHHhhcCCCC---CCceEEeCCCCCchhHHHHHHHHHhC-------CcEEEEecccc
Q 044198 463 DIGGLDTVKRELQETVQYPVEHPEMFEKFGMSP---SRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISIKGPEL 532 (772)
Q Consensus 463 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~~iLl~GppGtGKT~la~alA~~~~-------~~~i~v~~~~l 532 (772)
+++|++++|+++.+.+.+ +...+.+.+.|+.+ ..+++|+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999999888 56667777788764 45899999999999999999998763 36999999999
Q ss_pred hhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCC--
Q 044198 533 LTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRP-- 610 (772)
Q Consensus 533 ~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~-- 610 (772)
++.|+|+++..++.+|+.|.. ++|||||++.+.+.++ +......+++.|++.|+.. ..+++||+|++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~----~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~~ 172 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN----ERDYGQEAIEILLQVMENQ--RDDLVVILAGYKDRM 172 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHH
Confidence 999999999999999988754 6999999999865432 2233678899999999854 3577888887653
Q ss_pred C---CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHc------CC-CCHHHHHHHHHHHH
Q 044198 611 D---MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYT------HG-FSGADITEICQRAC 679 (772)
Q Consensus 611 ~---~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~------~g-~sg~di~~l~~~a~ 679 (772)
+ .++|++.+ ||+..|+||+++.+++.+|++.++++.... .+.....++... +. -+++++++++..|.
T Consensus 173 ~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~ 250 (284)
T TIGR02880 173 DSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRAR 250 (284)
T ss_pred HHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 3 35899998 999999999999999999999999875433 222234444431 22 25899999999998
Q ss_pred HHHHHHHH
Q 044198 680 KCAIREEI 687 (772)
Q Consensus 680 ~~a~~~~~ 687 (772)
.....+..
T Consensus 251 ~~~~~r~~ 258 (284)
T TIGR02880 251 LRQANRLF 258 (284)
T ss_pred HHHHHHHh
Confidence 77666554
No 81
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=4.8e-21 Score=200.49 Aligned_cols=214 Identities=20% Similarity=0.283 Sum_probs=161.4
Q ss_pred cccccchHHHHHHHhhhccccCCchHHHhhcCCCC---CCceEEeCCCCCchhHHHHHHHHHh-------CCcEEEEecc
Q 044198 461 WADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSP---SRGVLFYGPPGCGKTLLAKAIANEC-------QANFISIKGP 530 (772)
Q Consensus 461 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~~iLl~GppGtGKT~la~alA~~~-------~~~~i~v~~~ 530 (772)
+++++|++.+|+.+.+.+.|+... ....+.|+.+ ..+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 567999999999999998886443 3333455543 3568999999999999999999875 2478889999
Q ss_pred cchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCC
Q 044198 531 ELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRP 610 (772)
Q Consensus 531 ~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 610 (772)
++.+.|+|+++..++++|+.|.. +||||||+|.|... ++.......++.|+..|+.. ..++++|++++..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~~---~VL~IDE~~~L~~~-----~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~ 153 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKALG---GVLFIDEAYSLARG-----GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSD 153 (261)
T ss_pred HhhhhhccchHHHHHHHHHhccC---CEEEEechhhhccC-----CccchHHHHHHHHHHHHhcc--CCCEEEEecCCcc
Confidence 99999999999999999988753 69999999999631 12223467889999999865 3456666665433
Q ss_pred C-----CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCC-cccHHHHHHH-------c--CCCCHHHHHHHH
Q 044198 611 D-----MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSK-DIDLKAIAKY-------T--HGFSGADITEIC 675 (772)
Q Consensus 611 ~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~~~~la~~-------~--~g~sg~di~~l~ 675 (772)
+ .++|++.+ ||+..|.||.++.+++.+|++.+++.....- +.-+..+++. + ..-+++.+++++
T Consensus 154 ~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~ 231 (261)
T TIGR02881 154 EMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNII 231 (261)
T ss_pred hhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 2 36789988 9999999999999999999999998765432 2223444332 1 234688999999
Q ss_pred HHHHHHHHHHHH
Q 044198 676 QRACKCAIREEI 687 (772)
Q Consensus 676 ~~a~~~a~~~~~ 687 (772)
..|......+.+
T Consensus 232 e~a~~~~~~r~~ 243 (261)
T TIGR02881 232 EKAIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHHHh
Confidence 988877666554
No 82
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=1.1e-21 Score=183.19 Aligned_cols=130 Identities=48% Similarity=0.783 Sum_probs=117.4
Q ss_pred eEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcccccchHHHHHHHHHHHhCC-CeEEEEcCchhhhhccCCCCCC
Q 044198 499 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSA-PCVLFFDELDSIAIQRGSSVGD 577 (772)
Q Consensus 499 iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~-p~ilfiDEid~l~~~r~~~~~~ 577 (772)
+||+||||||||++|+++|+.++.+++.++++++.+.+.+++++.++.+|+.+.... |+||||||+|.+.+.... ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~--~~ 78 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQP--SS 78 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCST--SS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccc--cc
Confidence 689999999999999999999999999999999999999999999999999999888 999999999999988721 23
Q ss_pred CCchhHHHHHHHHHhcCCCCC-CcEEEEeecCCCCCCCccccCCCCccccccCCC
Q 044198 578 GGGVDRIVNQLLTEMDGLSAK-KTVFVIGATNRPDMIDPALLRPGRLDQLIYIPL 631 (772)
Q Consensus 578 ~~~~~~~~~~lL~~ld~~~~~-~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~ 631 (772)
.....+++++|+..|+..... .+++||+|||.++.++++++| |||+..|++|+
T Consensus 79 ~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 79 SSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 334788999999999998765 679999999999999999998 89999999874
No 83
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=9e-21 Score=209.98 Aligned_cols=261 Identities=24% Similarity=0.320 Sum_probs=186.5
Q ss_pred ccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch--------
Q 044198 462 ADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL-------- 533 (772)
Q Consensus 462 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~-------- 533 (772)
.|-.|++.+|+.+.+.+.-.... .--...-++|+||||+|||+|++.+|..++..|++++..-+-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 45679999999998876532111 111234488999999999999999999999999998764432
Q ss_pred -hcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-------------CCC
Q 044198 534 -TMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-------------AKK 599 (772)
Q Consensus 534 -~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-------------~~~ 599 (772)
..|+|..+..+-+-.++|...+| ++++||||.+...-..+ =.+.||..||--. ...
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGD---------PaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGD---------PASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCC---------hHHHHHhhcCHhhcCchhhccccCccchh
Confidence 44999999999999999999998 88999999996442211 1456888877421 246
Q ss_pred cEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhc-----cCCCCCcccHHHHHHHcCCCCHHHHHHH
Q 044198 600 TVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLR-----KSPVSKDIDLKAIAKYTHGFSGADITEI 674 (772)
Q Consensus 600 ~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~-----~~~~~~~~~~~~la~~~~g~sg~di~~l 674 (772)
+|++|||+|..+.|+.+|+. |++ +|.++-+++++..+|.+.|+= ...+. ...-.++..-|..+
T Consensus 466 ~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~---------~~el~i~d~ai~~i 533 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLK---------KGELTITDEAIKDI 533 (782)
T ss_pred heEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCC---------ccceeecHHHHHHH
Confidence 89999999999999999997 997 999999999999999999882 22222 11122555666666
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHH-hhCCC--CCCHHHHHHHHHHHHHHhhccCCCChhh
Q 044198 675 CQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESM-KYARR--SVSDSDVRKYQAFANTLQQSRGFGSSAA 751 (772)
Q Consensus 675 ~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al-~~~~~--s~~~~~~~~y~~~~~~~~~~~~~~~~~~ 751 (772)
++.-.+.|-.++++..+.. |...-..+-+ .+.+. .++..+++.|-.... -.++....
T Consensus 534 I~~YTREAGVR~LeR~i~k---------------i~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~~-----f~~~~~~~ 593 (782)
T COG0466 534 IRYYTREAGVRNLEREIAK---------------ICRKAAKKILLKKEKSIVKIDEKNLKKYLGVPV-----FRYGKAEE 593 (782)
T ss_pred HHHHhHhhhhhHHHHHHHH---------------HHHHHHHHHHhcCcccceeeCHHHHHHHhCCcc-----cCcccccc
Confidence 6666666555555444332 2222222222 22333 367777777654322 25677888
Q ss_pred cccCCCCCcccCCCCCCCCC
Q 044198 752 ANNVIPVSSFANGDGYGDLY 771 (772)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~ 771 (772)
.+.++.|+|+|||.+|||+.
T Consensus 594 ~~~vGvVtGLAWT~vGGd~L 613 (782)
T COG0466 594 EDQVGVVTGLAWTEVGGDLL 613 (782)
T ss_pred CCCCeeEeeeeeecCCceEE
Confidence 99999999999999999973
No 84
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=1.4e-19 Score=168.93 Aligned_cols=130 Identities=50% Similarity=0.858 Sum_probs=118.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHHcC-CceEEeccccccccCCCCCchh
Q 044198 226 ILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNA-PSIIFIDEIDSIAPKREKTHGE 304 (772)
Q Consensus 226 vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~-p~il~iDEid~l~~~~~~~~~~ 304 (772)
|||+||||||||++++.+|+.++.+++.+++.++.+.+.++....+..+|+.+.... |+|+||||+|.+.++.......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 699999999999999999999999999999999998889999999999999999887 9999999999999887445566
Q ss_pred hHHHHHHHHHHHhhccccc-CceEEEEeeCCCCCCChhhhccCCceeEEEeCC
Q 044198 305 VEKRIVSQLLTLMDGMKSR-AHVMVIGATNRPNSIDPALRRSGRFDKEIDIGV 356 (772)
Q Consensus 305 ~~~~v~~~L~~lld~~~~~-~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~ 356 (772)
....++++|+..++..... .++++|++||.++.+++++++ +||+..++++.
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 7788999999999987765 569999999999999999998 89999999863
No 85
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.82 E-value=7.7e-20 Score=218.19 Aligned_cols=262 Identities=23% Similarity=0.301 Sum_probs=174.6
Q ss_pred ccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch--------
Q 044198 462 ADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL-------- 533 (772)
Q Consensus 462 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~-------- 533 (772)
+++.|++.+|+.+.+.+...... +...+.+++|+||||||||++|+++|+.++.+|+.++...+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 45889999999998866543211 112334699999999999999999999999999998765432
Q ss_pred -hcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCC-----C--------CCC
Q 044198 534 -TMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGL-----S--------AKK 599 (772)
Q Consensus 534 -~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~-----~--------~~~ 599 (772)
..|+|.....+.+.|..+....| |+||||||.+.+.... ...+.||+.||.. . ...
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~---------~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s 462 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG---------DPASALLEVLDPEQNNAFSDHYLDVPFDLS 462 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC---------CHHHHHHHhcCHHhcCccccccCCceeccC
Confidence 35888888889999998877666 8999999999743211 1356678777631 1 125
Q ss_pred cEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhc-----cCCCC------CcccHHHHHH-HcCCCC
Q 044198 600 TVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLR-----KSPVS------KDIDLKAIAK-YTHGFS 667 (772)
Q Consensus 600 ~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~-----~~~~~------~~~~~~~la~-~~~g~s 667 (772)
++++|+|||.++.|++++++ ||+ +|.|+.|+.+++.+|++.++. ...+. ++..+..+++ .+..+.
T Consensus 463 ~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g 539 (775)
T TIGR00763 463 KVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAG 539 (775)
T ss_pred CEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcC
Confidence 78999999999999999998 996 899999999999999988762 22221 2223444544 233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhccCCC
Q 044198 668 GADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSDVRKYQAFANTLQQSRGFG 747 (772)
Q Consensus 668 g~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~~~~~~y~~~~~~~~~~~~~~ 747 (772)
.++|+..+......+.++..... . .... ..+.-.++.++++.|-..-. | +..
T Consensus 540 ~R~l~r~i~~~~~~~~~~~~~~~----~-------------~~~~------~~~~v~i~~~~~~~~lg~~~-~----~~~ 591 (775)
T TIGR00763 540 VRNLERQIEKICRKAAVKLVEQG----E-------------KKKS------EAESVVITPDNLKKYLGKPV-F----TYE 591 (775)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcc----C-------------cccC------CcccccCCHHHHHHhcCccc-c----ccc
Confidence 56666655555544444333100 0 0000 01223455555555532221 1 111
Q ss_pred ChhhcccCCCCCcccCCCCCCCCC
Q 044198 748 SSAAANNVIPVSSFANGDGYGDLY 771 (772)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~ 771 (772)
........+-|+|+||+..+|+++
T Consensus 592 ~~~~~~~~G~v~gla~~~~~g~~~ 615 (775)
T TIGR00763 592 RAYEVTPPGVVMGLAWTPMGGDTL 615 (775)
T ss_pred hhccCCCCeEEEEEEEeCCCcEEE
Confidence 224455678899999999999875
No 86
>CHL00181 cbbX CbbX; Provisional
Probab=99.79 E-value=4.3e-18 Score=179.32 Aligned_cols=213 Identities=20% Similarity=0.302 Sum_probs=158.6
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCC---ceEEEECCCCCcHHHHHHHHHHHhC-------CeEEEEech
Q 044198 188 YEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPP---KGILLHGPPGTGKTLLARAIANETG-------CYFLCINGP 257 (772)
Q Consensus 188 ~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~---~~vLL~GppGtGKT~Lar~la~~l~-------~~~~~v~~~ 257 (772)
+.+++|+++.+++|++++.. +..+......|+.++ .++||+||||||||++|+++|+.+. .+++.+++.
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 34799999999999999877 334566777787554 3599999999999999999998752 358899999
Q ss_pred hhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCC-
Q 044198 258 EIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPN- 336 (772)
Q Consensus 258 ~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~- 336 (772)
++.+.+.|+.+..+..+|+.+. ++||||||++.+...++ ..+....++..|+.+|+.. ..++++|+++++..
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~~~ 173 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQ--RDDLVVIFAGYKDRM 173 (287)
T ss_pred HHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHH
Confidence 9999999988888888887754 46999999999865432 2234567788899988764 35577777776432
Q ss_pred ----CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCC--cccccchhHHH----HH--hcCCc-hhhHHHHHHHH
Q 044198 337 ----SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMK--LAEDVNLETVA----RE--THGFV-GADLAALCTEG 403 (772)
Q Consensus 337 ----~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~--l~~~~~l~~la----~~--t~g~~-~~dl~~l~~~a 403 (772)
.++|++++ ||+..|+|+.++.+++.+|++.++.... +.++. ...+. +. ...|. ++++..++.++
T Consensus 174 ~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~ 250 (287)
T CHL00181 174 DKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNALDRA 250 (287)
T ss_pred HHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 34699998 9999999999999999999998876532 33321 22222 21 23455 68888888888
Q ss_pred HHHhhhhh
Q 044198 404 AMQCIREK 411 (772)
Q Consensus 404 ~~~~~~~~ 411 (772)
..+...+.
T Consensus 251 ~~~~~~r~ 258 (287)
T CHL00181 251 RMRQANRI 258 (287)
T ss_pred HHHHHHHH
Confidence 76655443
No 87
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.78 E-value=7.6e-18 Score=177.63 Aligned_cols=210 Identities=19% Similarity=0.300 Sum_probs=157.4
Q ss_pred cccCcHHHHHHHHHHHHcccCChhHHHHhCCCC---CceEEEECCCCCcHHHHHHHHHHHhC-------CeEEEEechhh
Q 044198 190 DVGGVRKQLGQIREVVELPLRHPQIFKALGVKP---PKGILLHGPPGTGKTLLARAIANETG-------CYFLCINGPEI 259 (772)
Q Consensus 190 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~---~~~vLL~GppGtGKT~Lar~la~~l~-------~~~~~v~~~~~ 259 (772)
+++|+++.+++|++++.+ +..++.+...|+.+ ..+++|+||||||||++|+++|..+. .+++.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999999888 55677778888764 44799999999999999999998762 36899999999
Q ss_pred hhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCC--C-
Q 044198 260 MSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP--N- 336 (772)
Q Consensus 260 ~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~--~- 336 (772)
.+.+.|+.+..++.+|+.+.. ++|||||++.+.+.+. .......+.+.|++.|+.. +.++++|++++.. +
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQ--RDDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHH
Confidence 888999888888888887643 6999999999864432 2234556778888988754 3567788877653 2
Q ss_pred --CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCC--cccccchhHHHHHh------cCC-chhhHHHHHHHHHH
Q 044198 337 --SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMK--LAEDVNLETVARET------HGF-VGADLAALCTEGAM 405 (772)
Q Consensus 337 --~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~--l~~~~~l~~la~~t------~g~-~~~dl~~l~~~a~~ 405 (772)
.++|++++ ||...|+|+.++.+++.+|++.+++... +..+ .+..+.... +.+ .++.+..++..+..
T Consensus 175 ~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~-a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 175 FFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAE-AEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHH-HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 35899999 9999999999999999999998876543 2222 222333221 222 25677788777766
Q ss_pred Hhhhh
Q 044198 406 QCIRE 410 (772)
Q Consensus 406 ~~~~~ 410 (772)
+...+
T Consensus 252 ~~~~r 256 (284)
T TIGR02880 252 RQANR 256 (284)
T ss_pred HHHHH
Confidence 55443
No 88
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.77 E-value=2.4e-18 Score=169.18 Aligned_cols=189 Identities=24% Similarity=0.375 Sum_probs=128.1
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhccc
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 537 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~v 537 (772)
..+++|+.|+++++..+.-.+...... -.+..+++||||||+||||||+.+|++++.+|...+++.+-
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~---- 87 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE---- 87 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC------
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh----
Confidence 347899999999998876554432111 13456799999999999999999999999999998887541
Q ss_pred ccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC----------------CCCcE
Q 044198 538 GESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS----------------AKKTV 601 (772)
Q Consensus 538 g~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~----------------~~~~v 601 (772)
....+..++..... ..|||||||+.+- ......|+..|+... +..++
T Consensus 88 --k~~dl~~il~~l~~--~~ILFIDEIHRln-------------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 88 --KAGDLAAILTNLKE--GDILFIDEIHRLN-------------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp --SCHHHHHHHHT--T--T-EEEECTCCC---------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred --hHHHHHHHHHhcCC--CcEEEEechhhcc-------------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 12445556655543 3699999999993 456677889998652 12468
Q ss_pred EEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHH
Q 044198 602 FVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRA 678 (772)
Q Consensus 602 ~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a 678 (772)
.+|+||++...|.+++.. ||..+..+..++.++..+|++...+.+.+. ++....++|+.+.| +++--.++++.+
T Consensus 151 TligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred eEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 999999999999999997 999888999999999999999988888776 33446777877766 666555555543
No 89
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.77 E-value=1.3e-17 Score=174.70 Aligned_cols=175 Identities=24% Similarity=0.325 Sum_probs=133.9
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhHHHHhCCCC---CceEEEECCCCCcHHHHHHHHHHHh-------CCeEEEEech
Q 044198 188 YEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKP---PKGILLHGPPGTGKTLLARAIANET-------GCYFLCINGP 257 (772)
Q Consensus 188 ~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~---~~~vLL~GppGtGKT~Lar~la~~l-------~~~~~~v~~~ 257 (772)
+++++|+++.+++|++++..+... ......|+.. ..+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 467999999999999988775433 2333445543 3469999999999999999999875 2367888999
Q ss_pred hhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCC-
Q 044198 258 EIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPN- 336 (772)
Q Consensus 258 ~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~- 336 (772)
++.+.+.|+....++.+|+.+. ++||||||+|.+..... .......+..|+..|+.. +..+++|+++.+.+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~---~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~~ 155 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE---KDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDEM 155 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc---cchHHHHHHHHHHHHhcc--CCCEEEEecCCcchh
Confidence 9999999999999999997764 46999999999974221 223345667788887764 34566666654432
Q ss_pred ----CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccC
Q 044198 337 ----SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNM 373 (772)
Q Consensus 337 ----~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~ 373 (772)
.++|++++ ||...+.|+.++.+++.+|++.++...
T Consensus 156 ~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 156 DYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred HHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 46889998 999999999999999999999887644
No 90
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.74 E-value=2.4e-17 Score=195.94 Aligned_cols=245 Identities=22% Similarity=0.271 Sum_probs=170.7
Q ss_pred cccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh----------CCcEEEEe
Q 044198 459 VRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISIK 528 (772)
Q Consensus 459 v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~----------~~~~i~v~ 528 (772)
-.++++.|.++....+.+.+.. ....+++|+||||||||++++++|..+ +..++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 3566788887766655544322 345679999999999999999999987 67789999
Q ss_pred cccch--hcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEee
Q 044198 529 GPELL--TMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGA 606 (772)
Q Consensus 529 ~~~l~--~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a 606 (772)
.+.++ .+|.|+.++.++.+|+.+....++||||||+|.+.+.+..+ ++...+.+.|+..|. .+.+.+|+|
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~----~~~~~~~~~L~~~l~----~g~i~~Iga 317 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS----GGSMDASNLLKPALS----SGKLRCIGS 317 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC----CccHHHHHHHHHHHh----CCCeEEEEe
Confidence 88887 57999999999999999987788999999999998765322 112334555666554 467899999
Q ss_pred cCCC-----CCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccC----CCC-CcccHHHHHHHcCCCCHH-----HH
Q 044198 607 TNRP-----DMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKS----PVS-KDIDLKAIAKYTHGFSGA-----DI 671 (772)
Q Consensus 607 Tn~~-----~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~----~~~-~~~~~~~la~~~~g~sg~-----di 671 (772)
||.. ..+|+|+.| ||+ .|+++.|+.+++.+|++.....+ .+. .+..+..++..+..|=+. --
T Consensus 318 Tt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ka 394 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKA 394 (731)
T ss_pred cCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHH
Confidence 9963 367999999 997 79999999999999999766542 221 344566666666554322 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCC----CCCHHHHHHHHHHHHHHhh
Q 044198 672 TEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARR----SVSDSDVRKYQAFANTLQQ 742 (772)
Q Consensus 672 ~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~----s~~~~~~~~y~~~~~~~~~ 742 (772)
-.++.+|+.....+.. ......|+.+|+..++..+.. .++.++...+..+.+.+..
T Consensus 395 i~lld~a~a~~~~~~~---------------~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~ 454 (731)
T TIGR02639 395 IDVIDEAGASFRLRPK---------------AKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKA 454 (731)
T ss_pred HHHHHHhhhhhhcCcc---------------cccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhc
Confidence 2344444332111000 001235899999999888732 3455667777766555443
No 91
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.74 E-value=5.5e-17 Score=174.32 Aligned_cols=248 Identities=20% Similarity=0.261 Sum_probs=168.9
Q ss_pred ccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhccccc
Q 044198 460 RWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 539 (772)
Q Consensus 460 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~ 539 (772)
+|+++.|++++++.|...+..... .-..+.+++|+||||||||++|+++|++++.++..+.++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 589999999999998877643111 1134567999999999999999999999998877666553211
Q ss_pred chHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC----------------CCCcEEE
Q 044198 540 SEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS----------------AKKTVFV 603 (772)
Q Consensus 540 se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~----------------~~~~v~v 603 (772)
...+...+... ..+.++||||++.+.+. ..+.|+..|+... ....+.+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~-------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPA-------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHH-------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 12233333332 23579999999998432 2333555554322 1234789
Q ss_pred EeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 044198 604 IGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCA 682 (772)
Q Consensus 604 i~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a 682 (772)
|++||++..+++++.+ ||...+.+++|+.+++.+|++..+....+. ++..++.+++.+.|.- +.+.++|..+...|
T Consensus 133 i~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a 209 (305)
T TIGR00635 133 VGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFA 209 (305)
T ss_pred EEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHH
Confidence 9999999999999987 999889999999999999999888765544 3445778888888744 77778888765544
Q ss_pred HHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCC---CCCCHHHHHHHHHHHHHHhhccCCCChhhcccCCCCC
Q 044198 683 IREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYAR---RSVSDSDVRKYQAFANTLQQSRGFGSSAAANNVIPVS 759 (772)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~---~s~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (772)
..... ..|+.+++.+++..+. ...+..+.+.+..+.+.+..+ .+ +..+++...+++
T Consensus 210 ~~~~~-------------------~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~-~~~~ia~~lg~~ 268 (305)
T TIGR00635 210 QVRGQ-------------------KIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PV-GLKTLAAALGED 268 (305)
T ss_pred HHcCC-------------------CCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cc-cHHHHHHHhCCC
Confidence 33211 2588999988887752 234444544555455555322 33 566666665554
Q ss_pred c
Q 044198 760 S 760 (772)
Q Consensus 760 ~ 760 (772)
.
T Consensus 269 ~ 269 (305)
T TIGR00635 269 A 269 (305)
T ss_pred c
Confidence 4
No 92
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.8e-17 Score=174.84 Aligned_cols=203 Identities=24% Similarity=0.315 Sum_probs=151.9
Q ss_pred CccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhccc
Q 044198 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAG 265 (772)
Q Consensus 186 ~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~~g 265 (772)
-+|+.++=-.+.+++|.+-+.......+.+++.|..-.+|.|||||||||||+++.|+|+.++..++-++-.+...
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~---- 273 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL---- 273 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----
Confidence 4666676666777788777776678889999999999999999999999999999999999999888877544322
Q ss_pred chHHHHHHHHHHHHHcCCceEEeccccccccCCCCCch---h----hHHHHHHHHHHHhhcccccC--ceEEEEeeCCCC
Q 044198 266 ESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHG---E----VEKRIVSQLLTLMDGMKSRA--HVMVIGATNRPN 336 (772)
Q Consensus 266 ~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~---~----~~~~v~~~L~~lld~~~~~~--~v~vI~atn~~~ 336 (772)
.. .++.++.... ..+||+|+|||.-+.-+..... . ...-.++.|++.+||+.+.. .-++|.|||..+
T Consensus 274 -n~-dLr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 274 -DS-DLRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred -cH-HHHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 12 2777775543 3479999999987643221111 1 12245678999999998766 678889999999
Q ss_pred CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCC--chhhHHH
Q 044198 337 SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGF--VGADLAA 398 (772)
Q Consensus 337 ~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~--~~~dl~~ 398 (772)
.|||||.||||.|.+|+++.-+.++-..+++.++..-. ++.-..++.+..++- ++||+..
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHH
Confidence 99999999999999999999999999888887764321 233344555444443 6666643
No 93
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.74 E-value=1.2e-16 Score=173.09 Aligned_cols=246 Identities=21% Similarity=0.271 Sum_probs=173.3
Q ss_pred cccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcccc
Q 044198 459 VRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG 538 (772)
Q Consensus 459 v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg 538 (772)
.+|+++.|++..++.+...+..... .-.++.+++|+||||||||++|+++|++++..+..++++.+.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~----- 88 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE----- 88 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc-----
Confidence 4789999999999988876643111 123467899999999999999999999999988777766431
Q ss_pred cchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC----------------CCCcEE
Q 044198 539 ESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS----------------AKKTVF 602 (772)
Q Consensus 539 ~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~----------------~~~~v~ 602 (772)
....+..++.... .+++|||||||.+... ..+.|...|+... ....+.
T Consensus 89 -~~~~l~~~l~~l~--~~~vl~IDEi~~l~~~-------------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~ 152 (328)
T PRK00080 89 -KPGDLAAILTNLE--EGDVLFIDEIHRLSPV-------------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFT 152 (328)
T ss_pred -ChHHHHHHHHhcc--cCCEEEEecHhhcchH-------------HHHHHHHHHHhcceeeeeccCccccceeecCCCce
Confidence 2234555555443 3579999999998421 1222444444321 113478
Q ss_pred EEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 044198 603 VIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKC 681 (772)
Q Consensus 603 vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~ 681 (772)
+|++||++..+++++.+ ||...+.+++|+.+++.+|++..+...++. ++..+..+++.+.| +.+.+..+++.+...
T Consensus 153 li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~~ 229 (328)
T PRK00080 153 LIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRDF 229 (328)
T ss_pred EEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHHH
Confidence 99999999999999987 999899999999999999999988776655 33447888888877 447788888776555
Q ss_pred HHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCC---CCCHHHHHHHHHHHHHHhhccCCCChhhcccCCC
Q 044198 682 AIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARR---SVSDSDVRKYQAFANTLQQSRGFGSSAAANNVIP 757 (772)
Q Consensus 682 a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~---s~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 757 (772)
|..+.. ..|+.+++..++..+.. .++..+.+.+..+.+.|..+ .+ +...++...+
T Consensus 230 a~~~~~-------------------~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~-~~~~~a~~lg 287 (328)
T PRK00080 230 AQVKGD-------------------GVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PV-GLDTLAAALG 287 (328)
T ss_pred HHHcCC-------------------CCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ce-eHHHHHHHHC
Confidence 543311 25899999999887644 46666777776677776543 23 4444444333
No 94
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.73 E-value=4.1e-17 Score=192.74 Aligned_cols=256 Identities=21% Similarity=0.305 Sum_probs=173.2
Q ss_pred ccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch--------
Q 044198 462 ADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL-------- 533 (772)
Q Consensus 462 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~-------- 533 (772)
.++.|++.+|+.+.+.+..... .+......++|+||||||||++++.+|+.++.+|+.++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 4578999999999876653211 1112344699999999999999999999999999888765432
Q ss_pred -hcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCC-------------CCCC
Q 044198 534 -TMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGL-------------SAKK 599 (772)
Q Consensus 534 -~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~-------------~~~~ 599 (772)
..|+|.....+.+.+..+....| |+||||+|.+...... ...+.||..||.- ....
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g---------~~~~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG---------DPASALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC---------CHHHHHHHHhccccEEEEecccccccccCC
Confidence 24777777777777777765565 8999999999643211 1356788888741 1347
Q ss_pred cEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhcc-----CCCC------CcccHHHHHH-HcCCCC
Q 044198 600 TVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRK-----SPVS------KDIDLKAIAK-YTHGFS 667 (772)
Q Consensus 600 ~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~-----~~~~------~~~~~~~la~-~~~g~s 667 (772)
++++|||+|.. .|+|||+. ||+ +|.++.++.++..+|++.++.. ..+. ++.-+..+++ ++..+-
T Consensus 465 ~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~G 540 (784)
T PRK10787 465 DVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAG 540 (784)
T ss_pred ceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccC
Confidence 89999999987 59999998 996 8999999999999999988831 1111 1112444443 233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhccCCC
Q 044198 668 GADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSDVRKYQAFANTLQQSRGFG 747 (772)
Q Consensus 668 g~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~~~~~~y~~~~~~~~~~~~~~ 747 (772)
.+.|+.+++..+..++.+.+... ......|+.+++.+.+..- .... .
T Consensus 541 aR~LeR~I~~i~r~~l~~~~~~~------------~~~~v~v~~~~~~~~lg~~--~~~~-------------------~ 587 (784)
T PRK10787 541 VRSLEREISKLCRKAVKQLLLDK------------SLKHIEINGDNLHDYLGVQ--RFDY-------------------G 587 (784)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcC------------CCceeeecHHHHHHHhCCC--cccc-------------------c
Confidence 57777777776666555543210 0011246666666655421 1111 1
Q ss_pred ChhhcccCCCCCcccCCCCCCCCC
Q 044198 748 SSAAANNVIPVSSFANGDGYGDLY 771 (772)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~ 771 (772)
.......++-|+|+|||..||++|
T Consensus 588 ~~~~~~~~G~~~gla~t~~gg~~l 611 (784)
T PRK10787 588 RADNENRVGQVTGLAWTEVGGDLL 611 (784)
T ss_pred hhhcCCCceEEEEeEEeCCCeEEE
Confidence 122345678899999999999986
No 95
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.73 E-value=4.2e-17 Score=170.49 Aligned_cols=228 Identities=21% Similarity=0.365 Sum_probs=161.6
Q ss_pred CcccccccchHHHH---HHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchh
Q 044198 458 NVRWADIGGLDTVK---RELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 534 (772)
Q Consensus 458 ~v~~~~i~g~~~~k---~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~ 534 (772)
..++++++|++++. +.|..+++ -....+++|||||||||||||+++|...+..|..+++..
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~-------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVE-------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHh-------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 44678888888753 22333322 234567999999999999999999999999999998864
Q ss_pred cccccchHHHHHHHHHHHhCC----CeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeec--C
Q 044198 535 MWFGESEANVRDVFDKARQSA----PCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGAT--N 608 (772)
Q Consensus 535 ~~vg~se~~i~~vf~~a~~~~----p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT--n 608 (772)
.+-+.++++|+.|++.. .-|||+|||+.+-... +..||-.|+ ++.+++|+|| |
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q-------------QD~lLp~vE----~G~iilIGATTEN 142 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ-------------QDALLPHVE----NGTIILIGATTEN 142 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh-------------hhhhhhhhc----CCeEEEEeccCCC
Confidence 34578999999996533 3699999999984332 344788776 4567888887 5
Q ss_pred CCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhh--ccCCCC------CcccHHHHHHHcCCCCHHHHHHHHHHHHH
Q 044198 609 RPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCL--RKSPVS------KDIDLKAIAKYTHGFSGADITEICQRACK 680 (772)
Q Consensus 609 ~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~--~~~~~~------~~~~~~~la~~~~g~sg~di~~l~~~a~~ 680 (772)
..-.+.+|+++ |.. ++.+.+.+.++..+++++.+ .+.++. ++.-++.|+..++| |.+.+++..-+
T Consensus 143 PsF~ln~ALlS--R~~-vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~LE~ 215 (436)
T COG2256 143 PSFELNPALLS--RAR-VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNLLEL 215 (436)
T ss_pred CCeeecHHHhh--hhh-eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHHHHH
Confidence 56689999998 885 88999999999999998844 222333 23345666666554 77766654433
Q ss_pred HHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhccCCC
Q 044198 681 CAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSDVRKYQAFANTLQQSRGFG 747 (772)
Q Consensus 681 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~~~~~~y~~~~~~~~~~~~~~ 747 (772)
.+..... ...++.+.+++.+.+..+...+..-..|..+..-.++-||..
T Consensus 216 ~~~~~~~------------------~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD 264 (436)
T COG2256 216 AALSAEP------------------DEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSD 264 (436)
T ss_pred HHHhcCC------------------CcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCC
Confidence 3322110 013458888888888777777777788888888888777653
No 96
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=5.3e-17 Score=168.11 Aligned_cols=177 Identities=29% Similarity=0.527 Sum_probs=134.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHHcC-CceEEeccccccccCCC
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNA-PSIIFIDEIDSIAPKRE 299 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~-p~il~iDEid~l~~~~~ 299 (772)
.+-++||+|||||||||++|+.||...|..+-.+.|.++.. ...+....+.++|..+.... .-+|||||.|.++-.+.
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRn 460 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERN 460 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhc
Confidence 34567999999999999999999999999988888877643 22345678999999998754 45789999998887665
Q ss_pred CCc-hhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc--
Q 044198 300 KTH-GEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-- 376 (772)
Q Consensus 300 ~~~-~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-- 376 (772)
... ++..+..++.|+-- .-.+...++++.+||+|.++|.++.. ||+..++||.|.+++|..+|..++.+..+.
T Consensus 461 ktymSEaqRsaLNAlLfR--TGdqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~ 536 (630)
T KOG0742|consen 461 KTYMSEAQRSALNALLFR--TGDQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPA 536 (630)
T ss_pred hhhhcHHHHHHHHHHHHH--hcccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcC
Confidence 432 33334444444322 12234568888999999999999988 999999999999999999998776543211
Q ss_pred ----------------------c---ccchhHHHHHhcCCchhhHHHHHHH
Q 044198 377 ----------------------E---DVNLETVARETHGFVGADLAALCTE 402 (772)
Q Consensus 377 ----------------------~---~~~l~~la~~t~g~~~~dl~~l~~~ 402 (772)
. +..+.+.|..|+||+|.+|..|+..
T Consensus 537 ~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~ 587 (630)
T KOG0742|consen 537 TSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVAS 587 (630)
T ss_pred CCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 0 0125678999999999999988754
No 97
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.70 E-value=4.7e-16 Score=153.04 Aligned_cols=182 Identities=27% Similarity=0.409 Sum_probs=120.1
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
.+.+-+++++.|+++.++.++-++....... .+..++|||||||+||||||+.+|++++.++..++++.+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh
Confidence 4567789999999999999887776532211 23457999999999999999999999999999998865421
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccc----------------cCc
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKS----------------RAH 325 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~----------------~~~ 325 (772)
...+..++.... ...||||||||.+.. ...+.|+..|+...- -.+
T Consensus 89 ------~~dl~~il~~l~--~~~ILFIDEIHRlnk-----------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 89 ------AGDLAAILTNLK--EGDILFIDEIHRLNK-----------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ------CHHHHHHHHT----TT-EEEECTCCC--H-----------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ------HHHHHHHHHhcC--CCcEEEEechhhccH-----------HHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 233444444443 346999999998853 345678888774321 135
Q ss_pred eEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCccc-ccchhHHHHHhcCCc
Q 044198 326 VMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAE-DVNLETVARETHGFV 392 (772)
Q Consensus 326 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~-~~~l~~la~~t~g~~ 392 (772)
+.+||||++...|++.|+. ||.....+..++.++...|++.....+.+.- +....++|+++.|-.
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtP 215 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTP 215 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSH
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCh
Confidence 8899999999999999998 9999999999999999999987665544432 223567777766643
No 98
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=5.9e-17 Score=163.65 Aligned_cols=148 Identities=32% Similarity=0.457 Sum_probs=125.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC---------CeEEEEechhhhhhcccchHHHHHHHHHHHHHc---CC--ceEE
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETG---------CYFLCINGPEIMSKMAGESESNLREAFNVAEKN---AP--SIIF 287 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~---------~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~---~p--~il~ 287 (772)
..+-+|||||||||||+|++++|..+. ..++.+|+..+.++|.+++-+.+..+|+....- .. ..++
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 345599999999999999999999873 356899999999999999999999999987652 12 2467
Q ss_pred eccccccccCCCCC----chhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHH
Q 044198 288 IDEIDSIAPKREKT----HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRL 363 (772)
Q Consensus 288 iDEid~l~~~~~~~----~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~ 363 (772)
|||+++++..|... ...-.-|+++++++.+|.++...+|++.+|+|-.+.||.|+.. |-|-..++++|+...+.
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~ 333 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIY 333 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHH
Confidence 99999998766321 1123458999999999999999999999999999999999998 99999999999999999
Q ss_pred HHHHHHhc
Q 044198 364 EVLRIHTK 371 (772)
Q Consensus 364 ~Il~~~~~ 371 (772)
+|++....
T Consensus 334 ~Ilkscie 341 (423)
T KOG0744|consen 334 EILKSCIE 341 (423)
T ss_pred HHHHHHHH
Confidence 99997653
No 99
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.69 E-value=5.5e-16 Score=154.85 Aligned_cols=232 Identities=22% Similarity=0.314 Sum_probs=166.0
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhccc
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 537 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~v 537 (772)
.-.|++-.|++.+|+.|.-.+.....+ -....|+|||||||.||||||..+|++++.++-..+++-+-
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le---- 89 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE---- 89 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc----
Confidence 346788999999999998777653322 23466899999999999999999999999999988888762
Q ss_pred ccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC----------------CCCcE
Q 044198 538 GESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS----------------AKKTV 601 (772)
Q Consensus 538 g~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~----------------~~~~v 601 (772)
....+..++...... +|+|||||+++.+. +-..|.-.|+.+. ....+
T Consensus 90 --K~gDlaaiLt~Le~~--DVLFIDEIHrl~~~-------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 90 --KPGDLAAILTNLEEG--DVLFIDEIHRLSPA-------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred --ChhhHHHHHhcCCcC--CeEEEehhhhcChh-------------HHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 345566677665554 69999999999432 3334556676542 23578
Q ss_pred EEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHH
Q 044198 602 FVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACK 680 (772)
Q Consensus 602 ~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~ 680 (772)
.+|+||.+.-+|...|.. ||..+..+..++.++..+|+++..+.+.+. .+....++|+.+.| |++=-..+++..--
T Consensus 153 TLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRD 229 (332)
T COG2255 153 TLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRD 229 (332)
T ss_pred eEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHH
Confidence 999999999999999987 999999999999999999999999888776 44457788888876 55544445555443
Q ss_pred HHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHH
Q 044198 681 CAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYA---RRSVSDSDVRKYQAFANTL 740 (772)
Q Consensus 681 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~---~~s~~~~~~~~y~~~~~~~ 740 (772)
.|....- ..|+.+-..+|++.+ .--+..-|.+..+.+.++|
T Consensus 230 fa~V~~~-------------------~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f 273 (332)
T COG2255 230 FAQVKGD-------------------GDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQF 273 (332)
T ss_pred HHHHhcC-------------------CcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHh
Confidence 3332211 135555555555554 2234445555555555555
No 100
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.69 E-value=4.5e-16 Score=182.50 Aligned_cols=242 Identities=21% Similarity=0.263 Sum_probs=162.9
Q ss_pred ccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh----------CCcEEEEec
Q 044198 460 RWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISIKG 529 (772)
Q Consensus 460 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~----------~~~~i~v~~ 529 (772)
.++.+.|.+...+.+.+.+.. ....++||+||||||||++|+++|... +..++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 344566666555555443322 235678999999999999999999764 455667766
Q ss_pred ccch--hcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeec
Q 044198 530 PELL--TMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGAT 607 (772)
Q Consensus 530 ~~l~--~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 607 (772)
..++ .+|.|+.+..++.+|+.+.+..++||||||||.+++.++.+ ++...+.+.|...+ ....+.+|+||
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~----~g~~d~~nlLkp~L----~~g~i~vIgAT 322 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS----GGQVDAANLIKPLL----SSGKIRVIGST 322 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCC----CcHHHHHHHHHHHH----hCCCeEEEecC
Confidence 6666 46889999999999999988888999999999998775321 11233333333333 35679999999
Q ss_pred CCCC-----CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccH-----HHHHHHcC-----CCCHHHHH
Q 044198 608 NRPD-----MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDL-----KAIAKYTH-----GFSGADIT 672 (772)
Q Consensus 608 n~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~-----~~la~~~~-----g~sg~di~ 672 (772)
|.++ .+|+|+.| ||+ .|.++.|+.+++.+|++.+..++....++++ ...+..+. .+-+...-
T Consensus 323 t~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKai 399 (758)
T PRK11034 323 TYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_pred ChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHH
Confidence 9865 57999999 997 8999999999999999988776655544443 33333333 33445777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCC----CCCHHHHHHHHHHHHHH
Q 044198 673 EICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARR----SVSDSDVRKYQAFANTL 740 (772)
Q Consensus 673 ~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~----s~~~~~~~~y~~~~~~~ 740 (772)
.++.+|+...-.... . .....|+.+|+.+++..... .+..++.+.+..+.+.+
T Consensus 400 dlldea~a~~~~~~~--~-------------~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L 456 (758)
T PRK11034 400 DVIDEAGARARLMPV--S-------------KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRL 456 (758)
T ss_pred HHHHHHHHhhccCcc--c-------------ccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHh
Confidence 788888754311000 0 00124788888888776533 23344545555554443
No 101
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.3e-16 Score=173.91 Aligned_cols=164 Identities=26% Similarity=0.423 Sum_probs=131.5
Q ss_pred ccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch--------
Q 044198 462 ADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL-------- 533 (772)
Q Consensus 462 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~-------- 533 (772)
+|-.|++++|+.+.+.+.-.... |-..++-++|+||||+|||++++.+|..++..|++++..-+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 46789999999999887532111 223355589999999999999999999999999887654332
Q ss_pred -hcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-------------CCC
Q 044198 534 -TMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-------------AKK 599 (772)
Q Consensus 534 -~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-------------~~~ 599 (772)
..|+|.....+-+..+...-.+| +++|||||.+.. +.. |+ =.+.||..||--. ...
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~--g~q-GD------PasALLElLDPEQNanFlDHYLdVp~DLS 553 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS--GHQ-GD------PASALLELLDPEQNANFLDHYLDVPVDLS 553 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC--CCC-CC------hHHHHHHhcChhhccchhhhccccccchh
Confidence 45999999999999999999998 889999999972 111 11 1355777776421 246
Q ss_pred cEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhh
Q 044198 600 TVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCL 645 (772)
Q Consensus 600 ~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~ 645 (772)
+|++|||.|..+.|.++|+- |+. +|.++-+..++..+|.+.|+
T Consensus 554 kVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred heEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhh
Confidence 89999999999999999997 997 99999999999999999988
No 102
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.3e-14 Score=168.53 Aligned_cols=159 Identities=23% Similarity=0.339 Sum_probs=107.1
Q ss_pred ccc-cCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEEech
Q 044198 189 EDV-GGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET----------GCYFLCINGP 257 (772)
Q Consensus 189 ~~i-~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l----------~~~~~~v~~~ 257 (772)
+.+ |+.++.++.+-+.+.. ...++-+|+|.||+|||.++.-+++.. ...++.++-.
T Consensus 186 dPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 186 DPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 344 4447666666555543 223577899999999999999999865 2234444433
Q ss_pred hhh--hhcccchHHHHHHHHHHHH-HcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCC
Q 044198 258 EIM--SKMAGESESNLREAFNVAE-KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNR 334 (772)
Q Consensus 258 ~~~--~~~~g~~~~~l~~~f~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~ 334 (772)
.+. .++.|+.+.+++.+.+.+. .....|||+||++-+........ .-..++.|.. ...++.+.+||||..
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~---~~d~~nlLkp----~L~rg~l~~IGatT~ 325 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG---AIDAANLLKP----LLARGGLWCIGATTL 325 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch---HHHHHHhhHH----HHhcCCeEEEecccH
Confidence 222 4577889999999999888 45667899999999987655421 1112222222 223455999998873
Q ss_pred C-----CCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHh
Q 044198 335 P-----NSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHT 370 (772)
Q Consensus 335 ~-----~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~ 370 (772)
. -.-||++.+ ||+. +.++.|+.+....||....
T Consensus 326 e~Y~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL~~l~ 363 (898)
T KOG1051|consen 326 ETYRKCIEKDPALER--RWQL-VLVPIPSVENLSLILPGLS 363 (898)
T ss_pred HHHHHHHhhCcchhh--Ccce-eEeccCcccchhhhhhhhh
Confidence 3 134899998 9987 7789999887777776543
No 103
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.66 E-value=6.3e-16 Score=176.55 Aligned_cols=211 Identities=24% Similarity=0.317 Sum_probs=147.4
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh----------CCcEEE
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFIS 526 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~----------~~~~i~ 526 (772)
...+|+++.|++...+.+...+.. ..+.++||+||||||||++|++++..+ +.+|+.
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 346788999999988888754321 235679999999999999999998653 357898
Q ss_pred Eecccc-------hhcccccchHH----------------HHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhH
Q 044198 527 IKGPEL-------LTMWFGESEAN----------------VRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDR 583 (772)
Q Consensus 527 v~~~~l-------~~~~vg~se~~----------------i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~ 583 (772)
+++... ....+|..... -...+..| ...+||||||+.+. ..
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~-------------~~ 190 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELH-------------PV 190 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCC-------------HH
Confidence 887531 11111110000 01122222 23599999999983 45
Q ss_pred HHHHHHHHhcCCC---------------------------CCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHH
Q 044198 584 IVNQLLTEMDGLS---------------------------AKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHS 636 (772)
Q Consensus 584 ~~~~lL~~ld~~~---------------------------~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~ 636 (772)
.++.||..|+... +.+-.++++|||.|+.|+|++.+ |+. .++|++++.++
T Consensus 191 ~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~ee 267 (531)
T TIGR02902 191 QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEE 267 (531)
T ss_pred HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHH
Confidence 6777887775310 11124555667789999999998 986 78899999999
Q ss_pred HHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHH
Q 044198 637 RLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFE 715 (772)
Q Consensus 637 r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 715 (772)
+.+|++..+++..+. ++..++.++.++ ++++++.++++.|+..|..+.. ..|+.+|++
T Consensus 268 i~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~~-------------------~~It~~dI~ 326 (531)
T TIGR02902 268 IKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEGR-------------------KRILAEDIE 326 (531)
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCCC-------------------cEEcHHHHH
Confidence 999999999877654 334466666665 4899999999999887755421 259999999
Q ss_pred HHHhh
Q 044198 716 ESMKY 720 (772)
Q Consensus 716 ~al~~ 720 (772)
.++..
T Consensus 327 ~vl~~ 331 (531)
T TIGR02902 327 WVAEN 331 (531)
T ss_pred HHhCC
Confidence 99874
No 104
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.64 E-value=1.3e-15 Score=163.48 Aligned_cols=177 Identities=25% Similarity=0.406 Sum_probs=132.1
Q ss_pred ccccchHHHHHHHhhhccccCCchHHHhhc-CCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch-hcccc-
Q 044198 462 ADIGGLDTVKRELQETVQYPVEHPEMFEKF-GMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL-TMWFG- 538 (772)
Q Consensus 462 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~-~~~vg- 538 (772)
+.|.|++++|+.+..++.....+......+ .-.+++++||+||||||||++|+++|..++.+|+.++++++. ..|+|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 357899999999876665322221111111 112458899999999999999999999999999999999887 47888
Q ss_pred cchHHHHHHHHHHH------------------------------------------------------------------
Q 044198 539 ESEANVRDVFDKAR------------------------------------------------------------------ 552 (772)
Q Consensus 539 ~se~~i~~vf~~a~------------------------------------------------------------------ 552 (772)
+.+..++.+|..|.
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 56777777776650
Q ss_pred -------------------------------------------------------------------------hCCCeEE
Q 044198 553 -------------------------------------------------------------------------QSAPCVL 559 (772)
Q Consensus 553 -------------------------------------------------------------------------~~~p~il 559 (772)
.....|+
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 0133699
Q ss_pred EEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC--------CCCcEEEEeecC----CCCCCCccccCCCCccccc
Q 044198 560 FFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS--------AKKTVFVIGATN----RPDMIDPALLRPGRLDQLI 627 (772)
Q Consensus 560 fiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~--------~~~~v~vi~aTn----~~~~ld~allrpgRf~~~i 627 (772)
||||||.++.+.++. +..-...-++..||..|+|-. ..+++++||+.- .|+.|=|.|. |||..++
T Consensus 252 fiDEiDKIa~~~~~~-~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v 328 (441)
T TIGR00390 252 FIDEIDKIAKKGESS-GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRV 328 (441)
T ss_pred EEEchhhhcccCCCC-CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEE
Confidence 999999999765322 211224568999999999842 346788888874 5777778887 7999999
Q ss_pred cCCCCCHHHHHHHH
Q 044198 628 YIPLPDEHSRLQIF 641 (772)
Q Consensus 628 ~~~~p~~~~r~~Il 641 (772)
.+.+++.++...||
T Consensus 329 ~L~~L~~edL~rIL 342 (441)
T TIGR00390 329 ELQALTTDDFERIL 342 (441)
T ss_pred ECCCCCHHHHHHHh
Confidence 99999999999988
No 105
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.63 E-value=1.3e-15 Score=169.93 Aligned_cols=246 Identities=18% Similarity=0.219 Sum_probs=151.9
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh-----CCcEEEEecccchhcccccchH-HHHHHHHHHHhCCCeEEEEcCchhhhh
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPELLTMWFGESEA-NVRDVFDKARQSAPCVLFFDELDSIAI 569 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~-----~~~~i~v~~~~l~~~~vg~se~-~i~~vf~~a~~~~p~ilfiDEid~l~~ 569 (772)
..+++||||||+|||+|++++++++ +..++.+++.++...++..... .+....+..+ .+.+|+|||++.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 4568999999999999999999886 5678889988877655433211 1222222222 247999999999853
Q ss_pred ccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCC---CCccccCCCCcc--ccccCCCCCHHHHHHHHHHh
Q 044198 570 QRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDM---IDPALLRPGRLD--QLIYIPLPDEHSRLQIFKSC 644 (772)
Q Consensus 570 ~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~ 644 (772)
+. .....|+..++.+...+..+||++++.|.. +++.+.+ ||. ..+.+++||.++|.+|++..
T Consensus 214 ~~-----------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 214 KE-----------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CH-----------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHH
Confidence 31 233445666655444445577777766765 4577776 997 47999999999999999999
Q ss_pred hccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCC
Q 044198 645 LRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARR 723 (772)
Q Consensus 645 ~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~ 723 (772)
++..++. ++..++.||+...+ +.+++..++......|............+.............|+.+++.+++++.-.
T Consensus 281 ~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~~~~~~~~it~~~I~~~Va~~~~ 359 (405)
T TIGR00362 281 AEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLTGKPITLELAKEALKDLLRAKKKEITIENIQEVVAKYYN 359 (405)
T ss_pred HHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccCCCCCHHHHHHHHHHHcC
Confidence 9876655 44457778876654 788888888877665543211000000000000000111224777777777766432
Q ss_pred CCCHHHH---------HHHHHHHHHHhhccCCCChhhcccCCCC
Q 044198 724 SVSDSDV---------RKYQAFANTLQQSRGFGSSAAANNVIPV 758 (772)
Q Consensus 724 s~~~~~~---------~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (772)
++.+++ ..-.++..-+-+.-.-.|.++||+.||+
T Consensus 360 -v~~~~l~~~~r~~~~~~~R~~amyl~~~~~~~s~~~ig~~fg~ 402 (405)
T TIGR00362 360 -IKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLSLPEIGRAFGG 402 (405)
T ss_pred -CCHHHHhCCCCCcccchHHHHHHHHHHHHcCCCHHHHHHHhCC
Confidence 333332 1223333334444455688888887775
No 106
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.63 E-value=5.8e-15 Score=162.27 Aligned_cols=223 Identities=22% Similarity=0.265 Sum_probs=149.2
Q ss_pred cccchHHHHHHHhhhccccCCchHHHhh---cCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch-hcccc
Q 044198 463 DIGGLDTVKRELQETVQYPVEHPEMFEK---FGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL-TMWFG 538 (772)
Q Consensus 463 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~---~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~-~~~vg 538 (772)
.|.|++.+++.+...+....+....... -...+..++||+||||||||++|+++|..++.+|+.++++.+. ..|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 4899999999887665332211100000 0012457899999999999999999999999999999998875 46888
Q ss_pred cchHH-HHHHHHHH----HhCCCeEEEEcCchhhhhccCCCCCCCC-chhHHHHHHHHHhcCCC-----------CCCcE
Q 044198 539 ESEAN-VRDVFDKA----RQSAPCVLFFDELDSIAIQRGSSVGDGG-GVDRIVNQLLTEMDGLS-----------AKKTV 601 (772)
Q Consensus 539 ~se~~-i~~vf~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~-~~~~~~~~lL~~ld~~~-----------~~~~v 601 (772)
..... +..+++.+ ....++||||||||.+..++.+.+.... ....+++.||+.||+-. +....
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 86444 45555432 2346789999999999876432211111 14568999999998631 12245
Q ss_pred EEEeecCCCC----------------------------------------------------CCCccccCCCCccccccC
Q 044198 602 FVIGATNRPD----------------------------------------------------MIDPALLRPGRLDQLIYI 629 (772)
Q Consensus 602 ~vi~aTn~~~----------------------------------------------------~ld~allrpgRf~~~i~~ 629 (772)
++|.|+|-.. -+.|+++ ||+|.+++|
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f 309 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATL 309 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeec
Confidence 6666666400 0345666 499999999
Q ss_pred CCCCHHHHHHHHHH----hhc-------cCCCC---CcccHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHH
Q 044198 630 PLPDEHSRLQIFKS----CLR-------KSPVS---KDIDLKAIAKY--THGFSGADITEICQRACKCAIREEI 687 (772)
Q Consensus 630 ~~p~~~~r~~Il~~----~~~-------~~~~~---~~~~~~~la~~--~~g~sg~di~~l~~~a~~~a~~~~~ 687 (772)
.+.+.++..+|+.. .++ ...+. ++.-++.|++. ..++-.+.|+.++.......+.+..
T Consensus 310 ~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p 383 (412)
T PRK05342 310 EELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELP 383 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhcc
Confidence 99999999999973 332 12222 22335667764 3456678888888888877776543
No 107
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.62 E-value=1.4e-15 Score=163.24 Aligned_cols=177 Identities=25% Similarity=0.421 Sum_probs=131.5
Q ss_pred cccchHHHHHHHhhhccccCCchHHHhhcCC-CCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchh-cccc-c
Q 044198 463 DIGGLDTVKRELQETVQYPVEHPEMFEKFGM-SPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT-MWFG-E 539 (772)
Q Consensus 463 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~-~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~-~~vg-~ 539 (772)
.|.|++++|+.+..++.....+......... ..+.++||+||||||||++|+++|..++.+|+.++++++.. .|+| +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 4889999999987766432111110000000 12578999999999999999999999999999999998885 6999 4
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q 044198 540 SEANVRDVFDKAR------------------------------------------------------------------- 552 (772)
Q Consensus 540 se~~i~~vf~~a~------------------------------------------------------------------- 552 (772)
.+..++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 5677777777761
Q ss_pred ---h--------------------------------------------------------------------CCCeEEEE
Q 044198 553 ---Q--------------------------------------------------------------------SAPCVLFF 561 (772)
Q Consensus 553 ---~--------------------------------------------------------------------~~p~ilfi 561 (772)
. ..-.|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 12359999
Q ss_pred cCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC--------CCCcEEEEeecC----CCCCCCccccCCCCccccccC
Q 044198 562 DELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS--------AKKTVFVIGATN----RPDMIDPALLRPGRLDQLIYI 629 (772)
Q Consensus 562 DEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~--------~~~~v~vi~aTn----~~~~ld~allrpgRf~~~i~~ 629 (772)
||||.++.+.+++ +..-...-++..||..|+|-. +.+++++||+.- .|+.|-|.|. |||..++.+
T Consensus 256 DEiDKIa~~~~~~-~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L 332 (443)
T PRK05201 256 DEIDKIAARGGSS-GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVEL 332 (443)
T ss_pred EcchhhcccCCCC-CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEEC
Confidence 9999999775432 222224568999999999842 346788888873 5777778888 699999999
Q ss_pred CCCCHHHHHHHHH
Q 044198 630 PLPDEHSRLQIFK 642 (772)
Q Consensus 630 ~~p~~~~r~~Il~ 642 (772)
.+++.++...||.
T Consensus 333 ~~L~~~dL~~ILt 345 (443)
T PRK05201 333 DALTEEDFVRILT 345 (443)
T ss_pred CCCCHHHHHHHhc
Confidence 9999999999983
No 108
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=7.3e-15 Score=165.06 Aligned_cols=186 Identities=20% Similarity=0.298 Sum_probs=137.5
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCC--------------
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQA-------------- 522 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~-------------- 522 (772)
...+|++|+|++.+++.|...+..- +.++.+||+||+|+|||++|+.+|+.+++
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 3456899999999999998877531 22455899999999999999999998865
Q ss_pred ---------------cEEEEecccchhcccccchHHHHHHHHHHH----hCCCeEEEEcCchhhhhccCCCCCCCCchhH
Q 044198 523 ---------------NFISIKGPELLTMWFGESEANVRDVFDKAR----QSAPCVLFFDELDSIAIQRGSSVGDGGGVDR 583 (772)
Q Consensus 523 ---------------~~i~v~~~~l~~~~vg~se~~i~~vf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~ 583 (772)
.++.++..+ ..+-..++++.+.+. .....|+||||+|.| +..
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L-------------s~~ 139 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML-------------TNH 139 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc-------------CHH
Confidence 223333321 012344666665543 234579999999999 345
Q ss_pred HHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCc-ccHHHHHHH
Q 044198 584 IVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKD-IDLKAIAKY 662 (772)
Q Consensus 584 ~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~la~~ 662 (772)
..|.||..|+. ...++++|++||.++.|.+.+++ |+. ++.|..++.++..+.++..+.+.++..+ ..+..|++.
T Consensus 140 AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RCq-~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 140 AFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA 214 (700)
T ss_pred HHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HHH-hcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 68999999985 44577888899999999999997 995 9999999999999988887766555432 336777877
Q ss_pred cCCCCHHHHHHHHHHHH
Q 044198 663 THGFSGADITEICQRAC 679 (772)
Q Consensus 663 ~~g~sg~di~~l~~~a~ 679 (772)
++| +.++..+++..+.
T Consensus 215 A~G-s~RdALsLLdQai 230 (700)
T PRK12323 215 AQG-SMRDALSLTDQAI 230 (700)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 766 7777777776544
No 109
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1e-14 Score=163.36 Aligned_cols=183 Identities=20% Similarity=0.292 Sum_probs=130.7
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCC--------------
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQA-------------- 522 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~-------------- 522 (772)
.+.+|+++.|++++++.|...+... ..+.++||+||||||||++|+++|+.+++
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 3457899999999988888765531 23456899999999999999999998764
Q ss_pred ----------cEEEEecccchhcccccchHHHHHHHHHHHhC----CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHH
Q 044198 523 ----------NFISIKGPELLTMWFGESEANVRDVFDKARQS----APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQL 588 (772)
Q Consensus 523 ----------~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~l 588 (772)
.++.++++.- ..-..++.+.+.+... ...|+||||+|.+. ...++.|
T Consensus 77 c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-------------~~a~~~L 137 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-------------KEAFNAL 137 (472)
T ss_pred HHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-------------HHHHHHH
Confidence 3445544321 1124466666555432 34699999999983 3456788
Q ss_pred HHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCC
Q 044198 589 LTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFS 667 (772)
Q Consensus 589 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~s 667 (772)
|..|+.. ...+++|++|+.|..+.+++.+ |+. .+.|.+++.++...+++..++..++. ++..+..|++.+.| +
T Consensus 138 Lk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-d 211 (472)
T PRK14962 138 LKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-G 211 (472)
T ss_pred HHHHHhC--CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-C
Confidence 9998864 3467777777778899999998 986 89999999999999999888665543 34457778876654 4
Q ss_pred HHHHHHHHH
Q 044198 668 GADITEICQ 676 (772)
Q Consensus 668 g~di~~l~~ 676 (772)
.+++-+.+.
T Consensus 212 lR~aln~Le 220 (472)
T PRK14962 212 LRDALTMLE 220 (472)
T ss_pred HHHHHHHHH
Confidence 444444443
No 110
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=1.3e-14 Score=165.03 Aligned_cols=185 Identities=19% Similarity=0.289 Sum_probs=137.2
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc--------------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN-------------- 523 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~-------------- 523 (772)
..+|+++.|++.+++.|...+.. + +.++.+||+||+|||||++|+++|+.+++.
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~-----------g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG-----------G-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 45789999999999999887653 1 234457999999999999999999988642
Q ss_pred ----------EEEEecccchhcccccchHHHHHHHHHHHh----CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHH
Q 044198 524 ----------FISIKGPELLTMWFGESEANVRDVFDKARQ----SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLL 589 (772)
Q Consensus 524 ----------~i~v~~~~l~~~~vg~se~~i~~vf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL 589 (772)
++.++..+ ..+-..++++.+.+.. ....|+||||+|.| +....|.||
T Consensus 80 r~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-------------T~~A~NALL 140 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML-------------TNHAFNAML 140 (830)
T ss_pred HHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC-------------CHHHHHHHH
Confidence 33333321 1122346666666542 23479999999998 245688999
Q ss_pred HHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCH
Q 044198 590 TEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSG 668 (772)
Q Consensus 590 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 668 (772)
..|+.. ..++.+|++||.++.|.+.+++ ||. ++.|..++.++..+.|+..+.+.++. ++..+..|++.++| +.
T Consensus 141 KtLEEP--P~~v~FILaTtd~~KIp~TIrS--RCq-~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-sm 214 (830)
T PRK07003 141 KTLEEP--PPHVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SM 214 (830)
T ss_pred HHHHhc--CCCeEEEEEECChhhccchhhh--heE-EEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 999854 4478888889999999999987 995 99999999999999999888765554 34557778888776 56
Q ss_pred HHHHHHHHHHH
Q 044198 669 ADITEICQRAC 679 (772)
Q Consensus 669 ~di~~l~~~a~ 679 (772)
++..+++..+.
T Consensus 215 RdALsLLdQAi 225 (830)
T PRK07003 215 RDALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 111
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.61 E-value=8.9e-15 Score=146.27 Aligned_cols=182 Identities=25% Similarity=0.376 Sum_probs=139.1
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
.+.+-.+++..|+++.++++.-++....... ...-++||+||||.||||||+.+|++++..+...+|+.+.
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le- 89 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE- 89 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc-
Confidence 3456678999999999999988887644332 3345799999999999999999999999999888887663
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccc----------------cCc
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKS----------------RAH 325 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~----------------~~~ 325 (772)
....+-.++...+. ..|+||||||.+.+. +-+.|...|+.++- -.+
T Consensus 90 -----K~gDlaaiLt~Le~--~DVLFIDEIHrl~~~-----------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 90 -----KPGDLAAILTNLEE--GDVLFIDEIHRLSPA-----------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred -----ChhhHHHHHhcCCc--CCeEEEehhhhcChh-----------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 23344555555443 369999999998653 33566677765431 246
Q ss_pred eEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCccc-ccchhHHHHHhcCCc
Q 044198 326 VMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAE-DVNLETVARETHGFV 392 (772)
Q Consensus 326 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~-~~~l~~la~~t~g~~ 392 (772)
+.+||||.+...|...|+. ||.....+..++.++..+|++.....+.+.- +....++|+++.|-.
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTP 217 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTP 217 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCc
Confidence 8999999999999999998 9999999999999999999987766555432 224567777776654
No 112
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.61 E-value=2.2e-15 Score=170.03 Aligned_cols=247 Identities=18% Similarity=0.211 Sum_probs=154.7
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh-----CCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhc
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQ 570 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~-----~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~ 570 (772)
..+++||||||||||+|++++++++ +..++.+++.++.+.++.........-|..... .+++|+|||++.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCC
Confidence 3569999999999999999999987 456888999888766554432222223333322 4579999999998543
Q ss_pred cCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCC---CCccccCCCCcc--ccccCCCCCHHHHHHHHHHhh
Q 044198 571 RGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDM---IDPALLRPGRLD--QLIYIPLPDEHSRLQIFKSCL 645 (772)
Q Consensus 571 r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~ 645 (772)
+.....|+..++.+...+..+||+++..|.. +++++.+ ||. ..+.+++||.++|.+|++..+
T Consensus 227 -----------~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 227 -----------ERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred -----------HHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 2234456666665544455577777776665 6688876 996 589999999999999999999
Q ss_pred ccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCCC
Q 044198 646 RKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRS 724 (772)
Q Consensus 646 ~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s 724 (772)
...++. ++.-++.||+...| +.++|..++......|............+....+........++.+++.+++++.-.
T Consensus 294 ~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~~~~~~~~~~~~~i~~~v~~~~~- 371 (450)
T PRK00149 294 EEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENIQKVVAEYYN- 371 (450)
T ss_pred HHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHcC-
Confidence 765544 34447777776654 778888888877665543311000000000000000011124677777776666432
Q ss_pred CCHHHH---------HHHHHHHHHHhhccCCCChhhcccCCCC
Q 044198 725 VSDSDV---------RKYQAFANTLQQSRGFGSSAAANNVIPV 758 (772)
Q Consensus 725 ~~~~~~---------~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (772)
++.+++ ..-.++.--+-+.-..-|.++||+.||+
T Consensus 372 i~~~~l~~~~R~~~~~~aR~iamyl~~~~~~~s~~~Ig~~fg~ 414 (450)
T PRK00149 372 IKVSDLKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFGG 414 (450)
T ss_pred CCHHHHhCCCCCcccChHHHHHHHHHHHhcCCCHHHHHHHcCC
Confidence 333332 2233444444444556688888888865
No 113
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.60 E-value=1.3e-14 Score=173.53 Aligned_cols=163 Identities=24% Similarity=0.330 Sum_probs=123.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh---------
Q 044198 190 DVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIM--------- 260 (772)
Q Consensus 190 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~--------- 260 (772)
++.|+++.++.|.+++..+.... -..+..++|+||||||||++|+++|+.++.+++.+++....
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~-------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG-------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 58899999999998876543211 12234799999999999999999999999999888754321
Q ss_pred hhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc-------------ccCceE
Q 044198 261 SKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK-------------SRAHVM 327 (772)
Q Consensus 261 ~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~-------------~~~~v~ 327 (772)
..|.|.....+...|..+....| |+||||||.+.+..... ..+.|++++|..+ ...+++
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-------HHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 24566666777778877765555 89999999998643211 1355666665311 124689
Q ss_pred EEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHh
Q 044198 328 VIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHT 370 (772)
Q Consensus 328 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~ 370 (772)
+|+|||..+.+++++++ ||. .|+++.|+.+++.+|++.++
T Consensus 466 ~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 466 FIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 99999999999999998 995 68999999999999998765
No 114
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.60 E-value=2.7e-14 Score=159.31 Aligned_cols=180 Identities=27% Similarity=0.434 Sum_probs=127.1
Q ss_pred cccccccchHHHHHH---HhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhc
Q 044198 459 VRWADIGGLDTVKRE---LQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 535 (772)
Q Consensus 459 v~~~~i~g~~~~k~~---l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~ 535 (772)
.+++++.|++++... +...+.. ....+++|+||||||||++|+++|+..+..|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc---
Confidence 457788898887443 6555532 224479999999999999999999999999999887642
Q ss_pred ccccchHHHHHHHHHHHh----CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeec--CC
Q 044198 536 WFGESEANVRDVFDKARQ----SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGAT--NR 609 (772)
Q Consensus 536 ~vg~se~~i~~vf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT--n~ 609 (772)
+...++.+++.+.. ....+|||||+|.+. ....+.|+..|+. ..+++|++| |.
T Consensus 73 ----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-------------~~~q~~LL~~le~----~~iilI~att~n~ 131 (413)
T PRK13342 73 ----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-------------KAQQDALLPHVED----GTITLIGATTENP 131 (413)
T ss_pred ----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-------------HHHHHHHHHHhhc----CcEEEEEeCCCCh
Confidence 23456677766642 245799999999883 3345667777764 456667665 33
Q ss_pred CCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccC--CC-C-CcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 044198 610 PDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKS--PV-S-KDIDLKAIAKYTHGFSGADITEICQRAC 679 (772)
Q Consensus 610 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~--~~-~-~~~~~~~la~~~~g~sg~di~~l~~~a~ 679 (772)
...+++++++ |+ .++.|++++.++...+++..+... .+ . .+..++.+++.+.| +.+.+.+++..+.
T Consensus 132 ~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 132 SFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred hhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 4578999998 99 589999999999999999877542 11 1 23345677776643 5555555555553
No 115
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.59 E-value=3.2e-14 Score=154.10 Aligned_cols=191 Identities=24% Similarity=0.351 Sum_probs=134.9
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
.+.+.+|+++.|.++.++.+..++...... -.++.+++|+||||||||++|+++|++++..+..++++.+.
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~- 88 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE- 88 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc-
Confidence 345668999999999999998887542111 13456899999999999999999999999888777765432
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc----------------ccCc
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK----------------SRAH 325 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~----------------~~~~ 325 (772)
....+..++... ..+.++||||+|.+... . .+.|...|+... ...+
T Consensus 89 -----~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-------~----~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 89 -----KPGDLAAILTNL--EEGDVLFIDEIHRLSPV-------V----EEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred -----ChHHHHHHHHhc--ccCCEEEEecHhhcchH-------H----HHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 122344444433 34679999999988532 1 122344443321 1134
Q ss_pred eEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCchhhHHHHHHH
Q 044198 326 VMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVGADLAALCTE 402 (772)
Q Consensus 326 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~ 402 (772)
+.+|++|+++..+++++++ ||...+.++.|+.+++.+|++.......+. ++..+..++..+.|.. +.+..+++.
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~ 225 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRR 225 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHH
Confidence 7889999999999999988 999899999999999999999776544332 2224778888888865 444444444
No 116
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.5e-14 Score=159.19 Aligned_cols=184 Identities=22% Similarity=0.276 Sum_probs=133.4
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc--------------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN-------------- 523 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~-------------- 523 (772)
.-+|+++.|++.+.+.|...+.. + +.+..+||+||||||||++|+++|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~-----------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKS-----------G-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 34688999999999888876653 1 223458999999999999999999988652
Q ss_pred ----------EEEEecccchhcccccchHHHHHHHHHHH----hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHH
Q 044198 524 ----------FISIKGPELLTMWFGESEANVRDVFDKAR----QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLL 589 (772)
Q Consensus 524 ----------~i~v~~~~l~~~~vg~se~~i~~vf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL 589 (772)
++.+++.. ...-..++++.+.+. .....|+||||+|.+ +...++.||
T Consensus 82 ~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-------------s~~A~NALL 142 (484)
T PRK14956 82 LEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-------------TDQSFNALL 142 (484)
T ss_pred HHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-------------CHHHHHHHH
Confidence 23333221 011234565555443 334569999999998 355789999
Q ss_pred HHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCH
Q 044198 590 TEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSG 668 (772)
Q Consensus 590 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 668 (772)
..|+. ...++++|++|+.++.|.+++++ |+. ++.|.+++.++..+.++..+.+.++. ++..+..+++.++| +.
T Consensus 143 KtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~ 216 (484)
T PRK14956 143 KTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SV 216 (484)
T ss_pred HHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hH
Confidence 99985 44678888999999999999998 996 78899898888888888888766554 34456777777665 55
Q ss_pred HHHHHHHHHH
Q 044198 669 ADITEICQRA 678 (772)
Q Consensus 669 ~di~~l~~~a 678 (772)
++.-+++..+
T Consensus 217 RdAL~lLeq~ 226 (484)
T PRK14956 217 RDMLSFMEQA 226 (484)
T ss_pred HHHHHHHHHH
Confidence 6655555443
No 117
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.58 E-value=2.6e-14 Score=156.06 Aligned_cols=224 Identities=20% Similarity=0.275 Sum_probs=148.9
Q ss_pred ccccchHHHHHHHhhhccccCCchHHHhhc----CC-CCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch-hc
Q 044198 462 ADIGGLDTVKRELQETVQYPVEHPEMFEKF----GM-SPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL-TM 535 (772)
Q Consensus 462 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~----~~-~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~-~~ 535 (772)
+.+.|++++++.+...+....+........ ++ ....++||+||||||||++|+++|..++.+|..++++.+. ..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 347899999998876652211110000000 01 1246799999999999999999999999999999888765 35
Q ss_pred ccccc-hHHHHHHHHHH----HhCCCeEEEEcCchhhhhccCCCCCCCCc-hhHHHHHHHHHhcCCC-----------CC
Q 044198 536 WFGES-EANVRDVFDKA----RQSAPCVLFFDELDSIAIQRGSSVGDGGG-VDRIVNQLLTEMDGLS-----------AK 598 (772)
Q Consensus 536 ~vg~s-e~~i~~vf~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~-~~~~~~~lL~~ld~~~-----------~~ 598 (772)
|+|.. +..+..+++.+ ....++||||||||.+..++.+.+..... ...+++.||+.|+|.. +.
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 88886 34455555432 23456899999999998765332111111 3478999999998752 12
Q ss_pred CcEEEEeecCCC---------------------------C-----------------------CCCccccCCCCcccccc
Q 044198 599 KTVFVIGATNRP---------------------------D-----------------------MIDPALLRPGRLDQLIY 628 (772)
Q Consensus 599 ~~v~vi~aTn~~---------------------------~-----------------------~ld~allrpgRf~~~i~ 628 (772)
.+.++|.|+|-. + -+.|+|+. |+|.+++
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~ 314 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIAT 314 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEee
Confidence 456788888750 0 03366664 9999999
Q ss_pred CCCCCHHHHHHHHHHh----hccC-------CCC---CcccHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH
Q 044198 629 IPLPDEHSRLQIFKSC----LRKS-------PVS---KDIDLKAIAKYT--HGFSGADITEICQRACKCAIREEI 687 (772)
Q Consensus 629 ~~~p~~~~r~~Il~~~----~~~~-------~~~---~~~~~~~la~~~--~g~sg~di~~l~~~a~~~a~~~~~ 687 (772)
|.+.+.++..+|+... ++++ ++. ++.-++.||+.. ..+-.+-|+.+++...+.++-+..
T Consensus 315 f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~p 389 (413)
T TIGR00382 315 LEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDLP 389 (413)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhCC
Confidence 9999999999998753 2211 222 222356677653 456678888888888777666543
No 118
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.58 E-value=1e-14 Score=175.18 Aligned_cols=166 Identities=21% Similarity=0.352 Sum_probs=127.0
Q ss_pred cccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh----------CCcEEEEe
Q 044198 459 VRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISIK 528 (772)
Q Consensus 459 v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~----------~~~~i~v~ 528 (772)
-.++.+.|.+...+.+.+.+.. +...+++|+||||||||++|+++|..+ +.+++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 3566788887754444433322 345679999999999999999999987 67888888
Q ss_pred cccch--hcccccchHHHHHHHHHHHh-CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEe
Q 044198 529 GPELL--TMWFGESEANVRDVFDKARQ-SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIG 605 (772)
Q Consensus 529 ~~~l~--~~~vg~se~~i~~vf~~a~~-~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 605 (772)
...++ .+|.|+.++.++.+|+.... ..++||||||+|.+.+.++.. + .....+.|...| .++.+.+|+
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~----~-~~d~~~~lkp~l----~~g~l~~Ig 312 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD----G-AMDAGNMLKPAL----ARGELHCVG 312 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc----c-chhHHHHhcchh----hcCCCeEEE
Confidence 88876 56889999999999988644 568999999999998765322 1 122334444333 466899999
Q ss_pred ecCCCC-----CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCC
Q 044198 606 ATNRPD-----MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSP 649 (772)
Q Consensus 606 aTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~ 649 (772)
||+.++ .+|+|+.| ||+ .|.++.|+.+++..|++....++.
T Consensus 313 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e 358 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYE 358 (857)
T ss_pred cCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhc
Confidence 999876 48999999 998 688999999999999988775543
No 119
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.57 E-value=4.9e-14 Score=151.45 Aligned_cols=187 Identities=24% Similarity=0.337 Sum_probs=130.2
Q ss_pred ccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcccc
Q 044198 187 GYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGE 266 (772)
Q Consensus 187 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~~g~ 266 (772)
+|+++.|.++.++.|+.++...... -..+.+++|+||||||||+||+++|++++..+..+.++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 5788999999999999888642211 123567999999999999999999999988776666543211
Q ss_pred hHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc----------------ccCceEEEE
Q 044198 267 SESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK----------------SRAHVMVIG 330 (772)
Q Consensus 267 ~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~----------------~~~~v~vI~ 330 (772)
...+...+... ..+.++||||++.+.+. ..+.|.++++... ...++.+|+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~-----------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPA-----------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHH-----------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 11222333222 34679999999988642 1233444444322 113478999
Q ss_pred eeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCchhhHHHHHHHH
Q 044198 331 ATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVGADLAALCTEG 403 (772)
Q Consensus 331 atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a 403 (772)
+|+++..+++++++ ||...+.+..|+.++..++++.......+. ++..++.+++.+.|+. +.+..++..+
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~ 205 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRV 205 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHH
Confidence 99999999999988 998889999999999999998776543222 2234678888888866 4445555544
No 120
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=2.4e-14 Score=156.74 Aligned_cols=192 Identities=18% Similarity=0.276 Sum_probs=131.8
Q ss_pred ccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcE---------------
Q 044198 460 RWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANF--------------- 524 (772)
Q Consensus 460 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~--------------- 524 (772)
.|++|+|++.+++.|+..+.....+. ..++...+.++||+||||+|||++|+++|..+.+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 48999999999999999987654322 223344567899999999999999999998764421
Q ss_pred EEEecccch--hcc-cccchHHHHHHHHHHHhC----CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCC
Q 044198 525 ISIKGPELL--TMW-FGESEANVRDVFDKARQS----APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSA 597 (772)
Q Consensus 525 i~v~~~~l~--~~~-vg~se~~i~~vf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~ 597 (772)
..-+.+|+. ... ..-.-..+|++++.+... ...|+||||+|.+. ....|.||..|+..
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-------------~~aanaLLk~LEep-- 144 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-------------ERAANALLKAVEEP-- 144 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-------------HHHHHHHHHHhhcC--
Confidence 001111110 000 001234578888877643 34699999999993 44568899999864
Q ss_pred CCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHH
Q 044198 598 KKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQ 676 (772)
Q Consensus 598 ~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~ 676 (772)
..++++|.+|+.++.+.|.+++ |+. .++|++|+.++..+++.... +++ +.....+++.+.|..++.++-+..
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrS--Rc~-~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l~~~ 216 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRS--RCR-HVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRLATD 216 (394)
T ss_pred CCCCeEEEEECChHHChHHHHh--hCe-EEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHHhcC
Confidence 2334444445558999999998 985 99999999999888776332 232 345667888899988776655443
No 121
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.57 E-value=1.2e-14 Score=173.78 Aligned_cols=184 Identities=22% Similarity=0.343 Sum_probs=134.3
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh----------CCcEEEE
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISI 527 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~----------~~~~i~v 527 (772)
.-.++++.|.++..+.+.+.+.. ....+++|+||||||||++|+.+|..+ +..++.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 34667888888764444433222 334579999999999999999999876 2457777
Q ss_pred ecccch--hcccccchHHHHHHHHHHHh-CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEE
Q 044198 528 KGPELL--TMWFGESEANVRDVFDKARQ-SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVI 604 (772)
Q Consensus 528 ~~~~l~--~~~vg~se~~i~~vf~~a~~-~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi 604 (772)
+...+. .+|.|+.+..++.+|+.++. ..++|||||||+.+.+.++.. + ...+.+.|+..|. ++.+.+|
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~-~----~~d~~n~Lkp~l~----~G~l~~I 320 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA-G----QGDAANLLKPALA----RGELRTI 320 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc-c----cccHHHHhhHHhh----CCCeEEE
Confidence 777765 36889999999999999865 457899999999998765432 1 1223344444443 5678999
Q ss_pred eecCCCC-----CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCC----CC-CcccHHHHHHHcCCC
Q 044198 605 GATNRPD-----MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSP----VS-KDIDLKAIAKYTHGF 666 (772)
Q Consensus 605 ~aTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~----~~-~~~~~~~la~~~~g~ 666 (772)
+||+..+ .+|+||.| ||. .|.++.|+.+++.+||+...+.+. +. .+..+..+++.+.+|
T Consensus 321 gaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 321 AATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred EecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 9998643 58999999 996 899999999999999876654432 22 345567777777655
No 122
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=7.7e-14 Score=157.34 Aligned_cols=185 Identities=20% Similarity=0.280 Sum_probs=136.4
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCC---------------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQA--------------- 522 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~--------------- 522 (772)
..+|+++.|++.+++.|...+.. + +.+..+||+||+|+|||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~-----------g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER-----------G-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 35789999999999999887653 1 23466899999999999999999998865
Q ss_pred ---------cEEEEecccchhcccccchHHHHHHHHHHHh----CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHH
Q 044198 523 ---------NFISIKGPELLTMWFGESEANVRDVFDKARQ----SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLL 589 (772)
Q Consensus 523 ---------~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL 589 (772)
.++.+++++- .+-..+|++...+.. ....|+||||+|.|- ....+.||
T Consensus 79 ~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-------------~~A~NALL 139 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-------------THSFNALL 139 (702)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-------------HHHHHHHH
Confidence 2344444321 123456666655432 345799999999982 44678899
Q ss_pred HHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCH
Q 044198 590 TEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSG 668 (772)
Q Consensus 590 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 668 (772)
..|+.. ...+.+|++|+.+..+.+.+++ |+. ++.|.+++.++..+.++..+.+.++. .+..+..+++.+.| +.
T Consensus 140 KtLEEP--P~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dL 213 (702)
T PRK14960 140 KTLEEP--PEHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SL 213 (702)
T ss_pred HHHhcC--CCCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 999864 3456777777888888888876 895 99999999999999998888776554 34457778887765 77
Q ss_pred HHHHHHHHHHH
Q 044198 669 ADITEICQRAC 679 (772)
Q Consensus 669 ~di~~l~~~a~ 679 (772)
+++.+++..+.
T Consensus 214 RdALnLLDQaI 224 (702)
T PRK14960 214 RDALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHHH
Confidence 77777766554
No 123
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.2e-13 Score=160.10 Aligned_cols=185 Identities=19% Similarity=0.255 Sum_probs=133.1
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcE-------------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANF------------- 524 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~------------- 524 (772)
..+|++|.|++.+++.|+..+..- +.+..+||+||||||||++|+++|+.+++..
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 457899999999999988776431 2244579999999999999999999986531
Q ss_pred -----------EEEecccchhcccccchHHHHHHHHHHH----hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHH
Q 044198 525 -----------ISIKGPELLTMWFGESEANVRDVFDKAR----QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLL 589 (772)
Q Consensus 525 -----------i~v~~~~l~~~~vg~se~~i~~vf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL 589 (772)
+.+++.+ . ..-..+|++.+.+. .....|+||||+|.| ....++.||
T Consensus 80 ~~i~~g~~~DviEidAas----~--~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-------------T~eAqNALL 140 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS----R--TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-------------SRSSFNALL 140 (944)
T ss_pred HHHhcCCCceEEEecccc----c--cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-------------CHHHHHHHH
Confidence 1122211 0 11234565554443 234469999999999 356789999
Q ss_pred HHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCH
Q 044198 590 TEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSG 668 (772)
Q Consensus 590 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 668 (772)
..|+.. ..++.+|++|+.+..|-+.+++ |+. ++.|.+++.++..+.++..+....+. .+..+..|++.+.| +.
T Consensus 141 KtLEEP--P~~vrFILaTTe~~kLl~TIlS--RCq-~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~ 214 (944)
T PRK14949 141 KTLEEP--PEHVKFLLATTDPQKLPVTVLS--RCL-QFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SM 214 (944)
T ss_pred HHHhcc--CCCeEEEEECCCchhchHHHHH--hhe-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 999964 4466677778888888888887 884 89999999999998888877654443 33457777887766 67
Q ss_pred HHHHHHHHHHH
Q 044198 669 ADITEICQRAC 679 (772)
Q Consensus 669 ~di~~l~~~a~ 679 (772)
+++.++|..|.
T Consensus 215 R~ALnLLdQal 225 (944)
T PRK14949 215 RDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHH
Confidence 77778876655
No 124
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.55 E-value=6.4e-14 Score=146.89 Aligned_cols=149 Identities=32% Similarity=0.485 Sum_probs=113.8
Q ss_pred CCCCCccccccCcHHHH---HHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechh
Q 044198 182 RLDDVGYEDVGGVRKQL---GQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPE 258 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~---~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~ 258 (772)
++.+-+++++.|++..+ .-|+++++. ..-.+++|||||||||||||+.||+.++..|..+++..
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~ 83 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT 83 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence 34567888999998876 335555553 33457999999999999999999999999999998632
Q ss_pred hhhhcccchHHHHHHHHHHHHHc----CCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEee--
Q 044198 259 IMSKMAGESESNLREAFNVAEKN----APSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGAT-- 332 (772)
Q Consensus 259 ~~~~~~g~~~~~l~~~f~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~at-- 332 (772)
...+.++.+++.++.. ...|||+||||.+-...+ +.|+..++ ++.+++||||
T Consensus 84 -------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ-----------D~lLp~vE----~G~iilIGATTE 141 (436)
T COG2256 84 -------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ-----------DALLPHVE----NGTIILIGATTE 141 (436)
T ss_pred -------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh-----------hhhhhhhc----CCeEEEEeccCC
Confidence 3456788999888553 257999999998854332 45665554 4678888887
Q ss_pred CCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHH
Q 044198 333 NRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRI 368 (772)
Q Consensus 333 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~ 368 (772)
||.-.+.+++++..| .+++.+.+.++...+++.
T Consensus 142 NPsF~ln~ALlSR~~---vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 142 NPSFELNPALLSRAR---VFELKPLSSEDIKKLLKR 174 (436)
T ss_pred CCCeeecHHHhhhhh---eeeeecCCHHHHHHHHHH
Confidence 566789999999443 378889999998888876
No 125
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=9.2e-14 Score=152.27 Aligned_cols=185 Identities=23% Similarity=0.307 Sum_probs=133.2
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc--------------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN-------------- 523 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~-------------- 523 (772)
+.+|+++.|++.+++.+...+.. + +.+..+||+||||+|||++|+++|+.+.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 45789999999999988876643 1 234558999999999999999999987532
Q ss_pred ----------EEEEecccchhcccccchHHHHHHHHHHHhC----CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHH
Q 044198 524 ----------FISIKGPELLTMWFGESEANVRDVFDKARQS----APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLL 589 (772)
Q Consensus 524 ----------~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL 589 (772)
++.++++. ...-..++.+.+.+... ...|+||||+|.+. ....+.||
T Consensus 80 ~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~-------------~~a~naLL 140 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS-------------RHSFNALL 140 (363)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-------------HHHHHHHH
Confidence 22222211 01234566666655432 24699999999882 44577899
Q ss_pred HHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCH
Q 044198 590 TEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSG 668 (772)
Q Consensus 590 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 668 (772)
..|+.. ...+.+|++|+.++.+.+++.+ |+. .+.|++|+.++..++++..+++.+.. ++..+..+++.+.| +.
T Consensus 141 k~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc~-~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~ 214 (363)
T PRK14961 141 KTLEEP--PQHIKFILATTDVEKIPKTILS--RCL-QFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SM 214 (363)
T ss_pred HHHhcC--CCCeEEEEEcCChHhhhHHHHh--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 999864 3456677777878888888886 884 89999999999999999888776543 34556778887765 67
Q ss_pred HHHHHHHHHHH
Q 044198 669 ADITEICQRAC 679 (772)
Q Consensus 669 ~di~~l~~~a~ 679 (772)
+++.+++..+.
T Consensus 215 R~al~~l~~~~ 225 (363)
T PRK14961 215 RDALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHHH
Confidence 77777776553
No 126
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.9e-13 Score=156.53 Aligned_cols=185 Identities=21% Similarity=0.317 Sum_probs=134.8
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc--------------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN-------------- 523 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~-------------- 523 (772)
..+|++|.|++.+.+.|...+.. + +.+..+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 35789999999999988876653 1 223457999999999999999999988652
Q ss_pred ----------EEEEecccchhcccccchHHHHHHHHHHH----hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHH
Q 044198 524 ----------FISIKGPELLTMWFGESEANVRDVFDKAR----QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLL 589 (772)
Q Consensus 524 ----------~i~v~~~~l~~~~vg~se~~i~~vf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL 589 (772)
++.+++.+- ..-..+|++.+.+. .....|+||||+|.+ +....|.||
T Consensus 80 ~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-------------s~~a~NALL 140 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-------------SRHSFNALL 140 (647)
T ss_pred HHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-------------CHHHHHHHH
Confidence 233333210 11234555554433 334579999999998 355789999
Q ss_pred HHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCH
Q 044198 590 TEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSG 668 (772)
Q Consensus 590 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 668 (772)
..|+. ...++.+|++|+.++.|-+.+++ |+ ..+.|.+++.++....++..+++.++. .+..+..|++.+.| +.
T Consensus 141 KtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~ 214 (647)
T PRK07994 141 KTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SM 214 (647)
T ss_pred HHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 99995 34567777778888888888887 98 599999999999999998887665544 33456777877766 67
Q ss_pred HHHHHHHHHHH
Q 044198 669 ADITEICQRAC 679 (772)
Q Consensus 669 ~di~~l~~~a~ 679 (772)
++..+++..|.
T Consensus 215 R~Al~lldqai 225 (647)
T PRK07994 215 RDALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHHH
Confidence 77777776554
No 127
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.54 E-value=3.1e-13 Score=136.80 Aligned_cols=184 Identities=22% Similarity=0.270 Sum_probs=129.6
Q ss_pred ccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCC------cEEEEe
Q 044198 455 EVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQA------NFISIK 528 (772)
Q Consensus 455 ~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~------~~i~v~ 528 (772)
.....+++++.|++.+.+.|...+.. ....++|||||||||||+.|+++|.++.. .+...+
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln 95 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN 95 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc
Confidence 34456788999999999999877653 23456999999999999999999999865 234455
Q ss_pred cccchhcccccchHHHHHHHHHHHhC---------C-CeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCC
Q 044198 529 GPELLTMWFGESEANVRDVFDKARQS---------A-PCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAK 598 (772)
Q Consensus 529 ~~~l~~~~vg~se~~i~~vf~~a~~~---------~-p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~ 598 (772)
.++-.+.-++. .++ +-|.+.... + +.|++|||+|++ +....+.|...|+.. .
T Consensus 96 aSderGisvvr--~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-------------tsdaq~aLrr~mE~~--s 157 (346)
T KOG0989|consen 96 ASDERGISVVR--EKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSM-------------TSDAQAALRRTMEDF--S 157 (346)
T ss_pred ccccccccchh--hhh-cCHHHHhhccccccCCCCCcceEEEEechhhh-------------hHHHHHHHHHHHhcc--c
Confidence 55543332211 111 123222211 1 279999999999 355688899999974 4
Q ss_pred CcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHH
Q 044198 599 KTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQ 676 (772)
Q Consensus 599 ~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~ 676 (772)
..+.+|..||+++.|.+.+.+ |+. .+.|+..+.+.....|+....+-++. ++..+..+++.++| |++..+.
T Consensus 158 ~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G----dLR~Ait 229 (346)
T KOG0989|consen 158 RTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG----DLRRAIT 229 (346)
T ss_pred cceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cHHHHHH
Confidence 467788899999999998987 998 77777777777777777777776665 33446777776554 6665443
No 128
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=8.1e-14 Score=156.55 Aligned_cols=190 Identities=19% Similarity=0.273 Sum_probs=141.2
Q ss_pred cCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcE-----------
Q 044198 456 VPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANF----------- 524 (772)
Q Consensus 456 ~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~----------- 524 (772)
...-+|+++.|++.+.+.|...+.. + +.+.++||+||||||||++|+++|+.+++..
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~-----------~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILN-----------D-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 3445789999999999988765543 1 2356799999999999999999999886521
Q ss_pred -----------------EEEecccchhcccccchHHHHHHHHHHHhC----CCeEEEEcCchhhhhccCCCCCCCCchhH
Q 044198 525 -----------------ISIKGPELLTMWFGESEANVRDVFDKARQS----APCVLFFDELDSIAIQRGSSVGDGGGVDR 583 (772)
Q Consensus 525 -----------------i~v~~~~l~~~~vg~se~~i~~vf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~ 583 (772)
+.+++.. ..+...++.+.+.+... ...|+||||+|.+. ..
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls-------------~~ 143 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS-------------KG 143 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC-------------HH
Confidence 1122111 11345678888777543 24699999999882 34
Q ss_pred HHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHH
Q 044198 584 IVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKY 662 (772)
Q Consensus 584 ~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~ 662 (772)
.++.||..|+. ....+++|++|+.++.+.+++.+ |+. .++|.+++.++..++++..+++.++. ++..+..+++.
T Consensus 144 a~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc~-~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~ 218 (507)
T PRK06645 144 AFNALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RCQ-RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYK 218 (507)
T ss_pred HHHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cce-EEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 57889999985 34567777788888889999887 884 88999999999999999999876654 33457778887
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q 044198 663 THGFSGADITEICQRACKCA 682 (772)
Q Consensus 663 ~~g~sg~di~~l~~~a~~~a 682 (772)
++| +.+++.+++..+...+
T Consensus 219 s~G-slR~al~~Ldkai~~~ 237 (507)
T PRK06645 219 SEG-SARDAVSILDQAASMS 237 (507)
T ss_pred cCC-CHHHHHHHHHHHHHhh
Confidence 776 8888888887775443
No 129
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.53 E-value=3.7e-14 Score=170.72 Aligned_cols=186 Identities=23% Similarity=0.354 Sum_probs=139.5
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh----------CCcEEEE
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISI 527 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~----------~~~~i~v 527 (772)
.-.|+.+.|.+...+.+.+.+.. +...+++|+||||||||++|+.+|... +..++.+
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 34577888888777776665433 345689999999999999999999876 3678999
Q ss_pred ecccch--hcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEe
Q 044198 528 KGPELL--TMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIG 605 (772)
Q Consensus 528 ~~~~l~--~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 605 (772)
++..++ .+|.|+.++.++.+|+.+....++||||||+|.+.+.++.. + ...+.+.|...|. ++.+.+|+
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~-g----~~~~a~lLkp~l~----rg~l~~Ig 312 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE-G----AIDAANILKPALA----RGELQCIG 312 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC-C----cccHHHHhHHHHh----CCCcEEEE
Confidence 998887 57899999999999999988888999999999998765322 1 1123333333333 56788999
Q ss_pred ecCCCC-----CCCccccCCCCccccccCCCCCHHHHHHHHHHhhcc----CCCC-CcccHHHHHHHcCCCCH
Q 044198 606 ATNRPD-----MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRK----SPVS-KDIDLKAIAKYTHGFSG 668 (772)
Q Consensus 606 aTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~----~~~~-~~~~~~~la~~~~g~sg 668 (772)
+|+..+ ..|+++.+ ||. .|.++.|+.++..+|++..... ..+. .+.-+..++..+.+|-+
T Consensus 313 aTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred eCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 999764 57899999 997 5899999999999998765422 2222 34446677777766643
No 130
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.53 E-value=4.8e-14 Score=170.12 Aligned_cols=184 Identities=22% Similarity=0.370 Sum_probs=134.9
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh----------CCcEEEE
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISI 527 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~----------~~~~i~v 527 (772)
.-.++.+.|.++..+.+.+.+. .+...+++|+||||||||++++++|... +.+++.+
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLS-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 3356678888775544444332 2345678999999999999999999875 5678888
Q ss_pred ecccch--hcccccchHHHHHHHHHHHhC-CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEE
Q 044198 528 KGPELL--TMWFGESEANVRDVFDKARQS-APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVI 604 (772)
Q Consensus 528 ~~~~l~--~~~vg~se~~i~~vf~~a~~~-~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi 604 (772)
+...++ .+|.|+.++.++.+|+.+... .++||||||+|.+.+.+... + ...+.+.|...+ ....+.+|
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~----~-~~d~~~~Lk~~l----~~g~i~~I 306 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE----G-AMDAGNMLKPAL----ARGELHCI 306 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc----c-hhHHHHHhchhh----hcCceEEE
Confidence 887775 568999999999999988654 58999999999998654321 1 122334333333 45679999
Q ss_pred eecCCCC-----CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCC-----cccHHHHHHHcCCC
Q 044198 605 GATNRPD-----MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSK-----DIDLKAIAKYTHGF 666 (772)
Q Consensus 605 ~aTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-----~~~~~~la~~~~g~ 666 (772)
++|+..+ .+|+|+.| ||+ .|+++.|+.+++..|++....++.... +..+...+..+.+|
T Consensus 307 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~y 375 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRY 375 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccc
Confidence 9999864 58999999 997 689999999999999998876655432 33455556666554
No 131
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.53 E-value=5.4e-14 Score=157.24 Aligned_cols=173 Identities=17% Similarity=0.252 Sum_probs=118.2
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh-----CCcEEEEecccchhcccccch-HHHHHHHHHHHhCCCeEEEEcCchhhhh
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPELLTMWFGESE-ANVRDVFDKARQSAPCVLFFDELDSIAI 569 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~-----~~~~i~v~~~~l~~~~vg~se-~~i~~vf~~a~~~~p~ilfiDEid~l~~ 569 (772)
..+++||||||||||+|++++|+++ +..++++++.+++..+..... ..+.. |.......+.+|+|||++.+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcC
Confidence 3469999999999999999999885 456788888887766533211 12222 3333333578999999999854
Q ss_pred ccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCC---CccccCCCCcc--ccccCCCCCHHHHHHHHHHh
Q 044198 570 QRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMI---DPALLRPGRLD--QLIYIPLPDEHSRLQIFKSC 644 (772)
Q Consensus 570 ~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l---d~allrpgRf~--~~i~~~~p~~~~r~~Il~~~ 644 (772)
.. ....+|+..++.+...++.+||++.+.|+.+ ++.+.+ ||. ..+.+++||.++|.+|++..
T Consensus 209 ~~-----------~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 209 KT-----------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred cH-----------HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHH
Confidence 31 1234455555554444556777666777654 466776 885 67889999999999999999
Q ss_pred hccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 044198 645 LRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAI 683 (772)
Q Consensus 645 ~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~ 683 (772)
++..++. ++.-++.||+...+ +.++|..++......+.
T Consensus 276 ~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~ 314 (440)
T PRK14088 276 LEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_pred HHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHH
Confidence 8765444 33346777776654 77888888776654443
No 132
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.53 E-value=8.4e-14 Score=162.80 Aligned_cols=181 Identities=24% Similarity=0.371 Sum_probs=123.2
Q ss_pred CcccccccchHHHHH---HHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchh
Q 044198 458 NVRWADIGGLDTVKR---ELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 534 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~---~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~ 534 (772)
..+++++.|++.+.. .+...+.. ....+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 356788889888763 34444322 223579999999999999999999999999988876531
Q ss_pred cccccchHHHHHHHHHHH-----hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCC
Q 044198 535 MWFGESEANVRDVFDKAR-----QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNR 609 (772)
Q Consensus 535 ~~vg~se~~i~~vf~~a~-----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~ 609 (772)
..+.++.+++.+. .....+|||||||.+. ....+.|+..++. ..+++|++|+.
T Consensus 89 -----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-------------~~qQdaLL~~lE~----g~IiLI~aTTe 146 (725)
T PRK13341 89 -----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFN-------------KAQQDALLPWVEN----GTITLIGATTE 146 (725)
T ss_pred -----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-------------HHHHHHHHHHhcC----ceEEEEEecCC
Confidence 1123444444432 1234699999999883 2234567776653 45677776643
Q ss_pred --CCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhc-------cCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 044198 610 --PDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLR-------KSPVS-KDIDLKAIAKYTHGFSGADITEICQRAC 679 (772)
Q Consensus 610 --~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~-------~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~ 679 (772)
...+++++++ |+. .+.|++++.+++..|++..+. +..+. ++.-++.|++.+.| +.+++.++++.|.
T Consensus 147 np~~~l~~aL~S--R~~-v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 147 NPYFEVNKALVS--RSR-LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred ChHhhhhhHhhc--ccc-ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3568899997 764 799999999999999998886 22222 23346777776643 5566666666554
No 133
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.52 E-value=1.6e-13 Score=151.37 Aligned_cols=202 Identities=24% Similarity=0.291 Sum_probs=128.3
Q ss_pred ccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhC---------CcEEEEecccc
Q 044198 462 ADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQ---------ANFISIKGPEL 532 (772)
Q Consensus 462 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~---------~~~i~v~~~~l 532 (772)
+++.|.+...+.|...+...+. + ..+.+++++||||||||+++++++..+. ..++.+++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 4577777777777665542111 1 2345799999999999999999998653 46788887553
Q ss_pred hhc----------cc--cc-------c-hHHHHHHHHHHH-hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHH
Q 044198 533 LTM----------WF--GE-------S-EANVRDVFDKAR-QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTE 591 (772)
Q Consensus 533 ~~~----------~v--g~-------s-e~~i~~vf~~a~-~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ 591 (772)
.+. .. |. + .+....+++... ...+.||+|||+|.+... .+.++.+|+..
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~----------~~~~L~~l~~~ 155 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD----------DDDLLYQLSRA 155 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC----------CcHHHHhHhcc
Confidence 221 11 11 1 222344555443 244679999999999621 12355666655
Q ss_pred hcCC-CCCCcEEEEeecCCCC---CCCccccCCCCcc-ccccCCCCCHHHHHHHHHHhhccC--C-CCCcccHHHHHHHc
Q 044198 592 MDGL-SAKKTVFVIGATNRPD---MIDPALLRPGRLD-QLIYIPLPDEHSRLQIFKSCLRKS--P-VSKDIDLKAIAKYT 663 (772)
Q Consensus 592 ld~~-~~~~~v~vi~aTn~~~---~ld~allrpgRf~-~~i~~~~p~~~~r~~Il~~~~~~~--~-~~~~~~~~~la~~~ 663 (772)
.+.. ....++.+|+++|.++ .+++.+.+ ||. ..++|++++.++..+|++..++.. + .-.+.-++.+++..
T Consensus 156 ~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~ 233 (365)
T TIGR02928 156 RSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALA 233 (365)
T ss_pred ccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHH
Confidence 2211 2336789999999886 47778776 775 679999999999999999888531 1 11222233444433
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHHH
Q 044198 664 ---HGFSGADITEICQRACKCAIRE 685 (772)
Q Consensus 664 ---~g~sg~di~~l~~~a~~~a~~~ 685 (772)
.| ..+....+|+.|+..|..+
T Consensus 234 ~~~~G-d~R~al~~l~~a~~~a~~~ 257 (365)
T TIGR02928 234 AQEHG-DARKAIDLLRVAGEIAERE 257 (365)
T ss_pred HHhcC-CHHHHHHHHHHHHHHHHHc
Confidence 34 3455566888888777654
No 134
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.52 E-value=1.3e-13 Score=153.58 Aligned_cols=169 Identities=12% Similarity=0.209 Sum_probs=113.5
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccC
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRG 572 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~ 572 (772)
..+++||||+|+|||+|++++++.+ +..+++++..++...+.......-...|+.... .+++|+|||++.+.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCCh-
Confidence 3569999999999999999999876 577888888877655432221112234554433 45799999999985321
Q ss_pred CCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCC---CCCccccCCCCcc--ccccCCCCCHHHHHHHHHHhhcc
Q 044198 573 SSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPD---MIDPALLRPGRLD--QLIYIPLPDEHSRLQIFKSCLRK 647 (772)
Q Consensus 573 ~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~~~ 647 (772)
....+|+..++.+...++.+|+++++.|. .+++++.+ ||. ..+.+++|+.++|.+|++..++.
T Consensus 219 ----------~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 219 ----------ATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred ----------hhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 12334444444333334556666655565 45688887 996 78999999999999999999987
Q ss_pred CCCCC-cccHHHHHHHcCCCCHHHHHHHHHHHH
Q 044198 648 SPVSK-DIDLKAIAKYTHGFSGADITEICQRAC 679 (772)
Q Consensus 648 ~~~~~-~~~~~~la~~~~g~sg~di~~l~~~a~ 679 (772)
.++.- +.-++.||....+ +.++|.+.+...+
T Consensus 287 ~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~ 318 (445)
T PRK12422 287 LSIRIEETALDFLIEALSS-NVKSLLHALTLLA 318 (445)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 76553 3335557665543 5667766666554
No 135
>PLN03025 replication factor C subunit; Provisional
Probab=99.52 E-value=2e-13 Score=147.35 Aligned_cols=181 Identities=20% Similarity=0.218 Sum_probs=126.0
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhC-----CcEEEEecccc
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKGPEL 532 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~-----~~~i~v~~~~l 532 (772)
..+++++.|.+++.+.|+..+.. ....++||+||||||||++|+++|+++. ..++.++.++.
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 45678999999998888765442 1234699999999999999999999872 34666777654
Q ss_pred hhcccccchHHHHHHHHHHH-------hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEe
Q 044198 533 LTMWFGESEANVRDVFDKAR-------QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIG 605 (772)
Q Consensus 533 ~~~~vg~se~~i~~vf~~a~-------~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 605 (772)
.+. ..+++..+... ...+.|++|||+|.+. ....+.|+..|+.... ...+|.
T Consensus 76 ~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-------------~~aq~aL~~~lE~~~~--~t~~il 134 (319)
T PLN03025 76 RGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-------------SGAQQALRRTMEIYSN--TTRFAL 134 (319)
T ss_pred ccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-------------HHHHHHHHHHHhcccC--CceEEE
Confidence 221 23333332211 1235799999999983 3346678888875433 344666
Q ss_pred ecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 044198 606 ATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRAC 679 (772)
Q Consensus 606 aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~ 679 (772)
+||.++.+.+++.+ |+. .+.|++|+.++....++..+++.++. ++..+..+++.+.| |++.++....
T Consensus 135 ~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln~Lq 202 (319)
T PLN03025 135 ACNTSSKIIEPIQS--RCA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALNNLQ 202 (319)
T ss_pred EeCCccccchhHHH--hhh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHH
Confidence 78888888888887 885 89999999999999999888765554 34457777776543 6666555443
No 136
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.52 E-value=1.2e-13 Score=156.01 Aligned_cols=172 Identities=16% Similarity=0.253 Sum_probs=120.0
Q ss_pred CceEEeCCCCCchhHHHHHHHHHh-----CCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhcc
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQR 571 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~-----~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r 571 (772)
..++|||++|||||+|++++++++ +..+++++..++++.++........+.|++... .+++|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 349999999999999999999986 467889999988877654433333334554433 35899999999986432
Q ss_pred CCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCC---CCCccccCCCCcc--ccccCCCCCHHHHHHHHHHhhc
Q 044198 572 GSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPD---MIDPALLRPGRLD--QLIYIPLPDEHSRLQIFKSCLR 646 (772)
Q Consensus 572 ~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~~ 646 (772)
.....|+..++.+...++.+||++...|. .+++.|.+ ||. .++.+..||.+.|.+||+.++.
T Consensus 394 -----------~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 -----------STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred -----------HHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 22344555555544444445554444444 46778887 886 7779999999999999999998
Q ss_pred cCCCCC-cccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 044198 647 KSPVSK-DIDLKAIAKYTHGFSGADITEICQRACKCAI 683 (772)
Q Consensus 647 ~~~~~~-~~~~~~la~~~~g~sg~di~~l~~~a~~~a~ 683 (772)
...+.- +.-++.|++... -+.++|..++......+.
T Consensus 461 ~r~l~l~~eVi~yLa~r~~-rnvR~LegaL~rL~a~a~ 497 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRIS-RNIRELEGALIRVTAFAS 497 (617)
T ss_pred hcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHH
Confidence 776663 334566676654 367888888877655443
No 137
>PRK04195 replication factor C large subunit; Provisional
Probab=99.51 E-value=1.7e-13 Score=155.84 Aligned_cols=190 Identities=24% Similarity=0.305 Sum_probs=136.0
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcc
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 536 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~ 536 (772)
...+++++.|.+.+++.|..++..... | .+++++||+||||||||++|+++|++++.+++.+++++..+
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~-- 77 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT-- 77 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc--
Confidence 345688999999999999888753221 1 23678999999999999999999999999999999987532
Q ss_pred cccchHHHHHHHHHHHh------CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCC
Q 044198 537 FGESEANVRDVFDKARQ------SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRP 610 (772)
Q Consensus 537 vg~se~~i~~vf~~a~~------~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 610 (772)
...++.+...+.. ..+.+|+|||+|.+.... ....++.|+..++. .+..+|+++|.+
T Consensus 78 ----~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~---------d~~~~~aL~~~l~~----~~~~iIli~n~~ 140 (482)
T PRK04195 78 ----ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE---------DRGGARAILELIKK----AKQPIILTANDP 140 (482)
T ss_pred ----HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc---------chhHHHHHHHHHHc----CCCCEEEeccCc
Confidence 1234444333322 246799999999985421 12345667777763 234577788988
Q ss_pred CCCCc-cccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 044198 611 DMIDP-ALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKC 681 (772)
Q Consensus 611 ~~ld~-allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~ 681 (772)
..+.+ .+.+ |+ ..|.|++|+.+++..+++..+.+.++. ++..++.|++.+. .|++.+++.....
T Consensus 141 ~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~----GDlR~ain~Lq~~ 206 (482)
T PRK04195 141 YDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSG----GDLRSAINDLQAI 206 (482)
T ss_pred cccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHH
Confidence 88877 4443 55 589999999999999999988766554 3445777777654 4788777766553
No 138
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.51 E-value=1.2e-12 Score=151.99 Aligned_cols=223 Identities=23% Similarity=0.355 Sum_probs=139.6
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh----------CCcEEE
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFIS 526 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~----------~~~~i~ 526 (772)
...+|+++.|++...+.+...+.. ..+.+++|+||||||||++|+++++.. +.+|+.
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 355788999998887776544422 224569999999999999999998765 357899
Q ss_pred Eecccch-------hcccccchHHH----HHHHHH----------HHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHH
Q 044198 527 IKGPELL-------TMWFGESEANV----RDVFDK----------ARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIV 585 (772)
Q Consensus 527 v~~~~l~-------~~~vg~se~~i----~~vf~~----------a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~ 585 (772)
+++..+- ..+.|...... +..+.. .......+|||||++.|- ....
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-------------~~~Q 282 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-------------PLLQ 282 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-------------HHHH
Confidence 9887641 11222211111 111100 001123599999998872 4456
Q ss_pred HHHHHHhcCCC--------------------------CCCcEEEEee-cCCCCCCCccccCCCCccccccCCCCCHHHHH
Q 044198 586 NQLLTEMDGLS--------------------------AKKTVFVIGA-TNRPDMIDPALLRPGRLDQLIYIPLPDEHSRL 638 (772)
Q Consensus 586 ~~lL~~ld~~~--------------------------~~~~v~vi~a-Tn~~~~ld~allrpgRf~~~i~~~~p~~~~r~ 638 (772)
+.|+..|+.-. ....+++|++ |+.++.+++++.+ ||. .++|++++.+++.
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 66777765321 1223555554 5668889999887 997 6789999999999
Q ss_pred HHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHH
Q 044198 639 QIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEES 717 (772)
Q Consensus 639 ~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a 717 (772)
+|++..+.+..+. .+.-++.|++.+ +.|+...+++..+...+..+..... . ......|+.+|++++
T Consensus 360 ~Il~~~a~~~~v~ls~eal~~L~~ys--~~gRraln~L~~~~~~~~~~~~~~~---~--------~~~~~~I~~edv~~~ 426 (615)
T TIGR02903 360 LIVLNAAEKINVHLAAGVEELIARYT--IEGRKAVNILADVYGYALYRAAEAG---K--------ENDKVTITQDDVYEV 426 (615)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHhc---c--------CCCCeeECHHHHHHH
Confidence 9999998876543 233345555544 3566555666556544444332100 0 011246999999999
Q ss_pred HhhC
Q 044198 718 MKYA 721 (772)
Q Consensus 718 l~~~ 721 (772)
+..-
T Consensus 427 l~~~ 430 (615)
T TIGR02903 427 IQIS 430 (615)
T ss_pred hCCC
Confidence 8864
No 139
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=2.1e-13 Score=154.46 Aligned_cols=185 Identities=18% Similarity=0.238 Sum_probs=135.1
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc--------------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN-------------- 523 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~-------------- 523 (772)
.-+|+++.|++.+.+.|...+... +.+..+||+||+|||||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 346899999999999998877431 234458999999999999999999988642
Q ss_pred ----------EEEEecccchhcccccchHHHHHHHHHHHh----CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHH
Q 044198 524 ----------FISIKGPELLTMWFGESEANVRDVFDKARQ----SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLL 589 (772)
Q Consensus 524 ----------~i~v~~~~l~~~~vg~se~~i~~vf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL 589 (772)
++.++++. ...-..+|++.+.+.. ....|+||||+|.+. ....|.||
T Consensus 80 ~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls-------------~~a~naLL 140 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS-------------GHSFNALL 140 (509)
T ss_pred HHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC-------------HHHHHHHH
Confidence 44444432 1123446666665432 334699999999983 44688999
Q ss_pred HHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCH
Q 044198 590 TEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSG 668 (772)
Q Consensus 590 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 668 (772)
..|+... ..+.+|++|+.++.+.+.+++ |+. .+.|.+++.++..+.++..+++.++. .+..+..+++.+.| +.
T Consensus 141 k~LEepp--~~~~fIlattd~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-sl 214 (509)
T PRK14958 141 KTLEEPP--SHVKFILATTDHHKLPVTVLS--RCL-QFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SV 214 (509)
T ss_pred HHHhccC--CCeEEEEEECChHhchHHHHH--Hhh-hhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 9999643 456677777778888878876 884 88899999988888888887766554 34457778877765 77
Q ss_pred HHHHHHHHHHH
Q 044198 669 ADITEICQRAC 679 (772)
Q Consensus 669 ~di~~l~~~a~ 679 (772)
+++.+++..+.
T Consensus 215 R~al~lLdq~i 225 (509)
T PRK14958 215 RDALSLLDQSI 225 (509)
T ss_pred HHHHHHHHHHH
Confidence 78888776654
No 140
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=3.7e-13 Score=153.32 Aligned_cols=187 Identities=20% Similarity=0.280 Sum_probs=137.7
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc-------------
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN------------- 523 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~------------- 523 (772)
...+|++|+|++.+++.|...+... +.+.++||+||+|||||++|+++|+.+++.
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 3457899999999999998876531 335668999999999999999999987542
Q ss_pred -----------EEEEecccchhcccccchHHHHHHHHHHHh----CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHH
Q 044198 524 -----------FISIKGPELLTMWFGESEANVRDVFDKARQ----SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQL 588 (772)
Q Consensus 524 -----------~i~v~~~~l~~~~vg~se~~i~~vf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~l 588 (772)
++.+++.. +.+-..++++++.+.. ....|+||||+|.+ ....++.|
T Consensus 79 Cr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-------------s~~A~NAL 139 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-------------SKSAFNAM 139 (709)
T ss_pred HHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-------------CHHHHHHH
Confidence 12222211 1223467777766532 23479999999987 24567889
Q ss_pred HHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCC
Q 044198 589 LTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFS 667 (772)
Q Consensus 589 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~s 667 (772)
|..|+.. ...+.+|++||.+..+.+.+++ |+- .+.|+.++.++..+.++..+++.++. ++..+..|++.+.| +
T Consensus 140 LKtLEEP--p~~v~fILaTtd~~kL~~TIrS--RC~-~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-s 213 (709)
T PRK08691 140 LKTLEEP--PEHVKFILATTDPHKVPVTVLS--RCL-QFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-S 213 (709)
T ss_pred HHHHHhC--CCCcEEEEEeCCccccchHHHH--HHh-hhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-C
Confidence 9999964 3456777788888888888875 884 88899999999999999988876655 33447788887754 7
Q ss_pred HHHHHHHHHHHHH
Q 044198 668 GADITEICQRACK 680 (772)
Q Consensus 668 g~di~~l~~~a~~ 680 (772)
.+++.+++..+..
T Consensus 214 lRdAlnLLDqaia 226 (709)
T PRK08691 214 MRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888866654
No 141
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=5.3e-13 Score=148.77 Aligned_cols=186 Identities=19% Similarity=0.250 Sum_probs=139.9
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCC---------------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQA--------------- 522 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~--------------- 522 (772)
..+|+|+.|++.+.+.|...+.. + +.+.++||+||+|+|||++|+.+|..+++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 35789999999999988866543 1 33567999999999999999999986532
Q ss_pred ---------cEEEEecccchhcccccchHHHHHHHHHHHhC----CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHH
Q 044198 523 ---------NFISIKGPELLTMWFGESEANVRDVFDKARQS----APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLL 589 (772)
Q Consensus 523 ---------~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL 589 (772)
.++.+++++- .+-..++++.+.+... ...|++|||+|.+. ...+|.||
T Consensus 77 ~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls-------------~~A~NaLL 137 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS-------------NSAFNALL 137 (491)
T ss_pred HHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC-------------HHHHHHHH
Confidence 3455555431 1235677777766533 34699999999882 45688999
Q ss_pred HHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCH
Q 044198 590 TEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSG 668 (772)
Q Consensus 590 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 668 (772)
..|+... ..+.+|++|+.++.+.+.+++ |+. .+.|.+++.++..+.++..+++.++. ++..+..|++.++| +.
T Consensus 138 K~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-sl 211 (491)
T PRK14964 138 KTLEEPA--PHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SM 211 (491)
T ss_pred HHHhCCC--CCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 9999643 467777778888888888887 885 79999999999999999888776654 44557778887765 77
Q ss_pred HHHHHHHHHHHH
Q 044198 669 ADITEICQRACK 680 (772)
Q Consensus 669 ~di~~l~~~a~~ 680 (772)
+++.+++..+..
T Consensus 212 R~alslLdqli~ 223 (491)
T PRK14964 212 RNALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHHHHH
Confidence 888777776654
No 142
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=4.6e-13 Score=153.73 Aligned_cols=186 Identities=25% Similarity=0.344 Sum_probs=138.1
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCC---------------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQA--------------- 522 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~--------------- 522 (772)
..+|+++.|++.+.+.|...+.. -+.++.+||+||+|||||++|+.+|..+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 45789999999999999887653 123456899999999999999999988743
Q ss_pred ---------cEEEEecccchhcccccchHHHHHHHHHHHh----CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHH
Q 044198 523 ---------NFISIKGPELLTMWFGESEANVRDVFDKARQ----SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLL 589 (772)
Q Consensus 523 ---------~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL 589 (772)
+++.++++. +.+-..++++...+.. ....|++|||+|.+. ....+.||
T Consensus 80 ~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt-------------~~a~naLL 140 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS-------------TGAFNALL 140 (559)
T ss_pred HHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-------------HHHHHHHH
Confidence 234444321 1234567777777653 234799999999882 44688999
Q ss_pred HHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCH
Q 044198 590 TEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSG 668 (772)
Q Consensus 590 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 668 (772)
..|+.. ...+++|++|+.|+.+.+.+++ |+. .+.|++|+.++....++..+++.++. ++..+..+++.+.| +.
T Consensus 141 KtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~ 214 (559)
T PRK05563 141 KTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GM 214 (559)
T ss_pred HHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 999864 4466777777888999999887 886 78899999999999999888776654 33456777887766 77
Q ss_pred HHHHHHHHHHHH
Q 044198 669 ADITEICQRACK 680 (772)
Q Consensus 669 ~di~~l~~~a~~ 680 (772)
++..+++..+..
T Consensus 215 R~al~~Ldq~~~ 226 (559)
T PRK05563 215 RDALSILDQAIS 226 (559)
T ss_pred HHHHHHHHHHHH
Confidence 777777665543
No 143
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.50 E-value=3.8e-13 Score=150.00 Aligned_cols=220 Identities=21% Similarity=0.288 Sum_probs=140.0
Q ss_pred ccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh-----CCcEEEEecccchh--
Q 044198 462 ADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPELLT-- 534 (772)
Q Consensus 462 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~-----~~~~i~v~~~~l~~-- 534 (772)
+.+.|-+...+.|...+...+. + ..+.+++++||||||||++++.++..+ +..++.+++....+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 4455666555555554432111 1 234569999999999999999999876 46788888764321
Q ss_pred --------cccc-------cc-hHHHHHHHHHHHh-CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCC
Q 044198 535 --------MWFG-------ES-EANVRDVFDKARQ-SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSA 597 (772)
Q Consensus 535 --------~~vg-------~s-e~~i~~vf~~a~~-~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~ 597 (772)
.+.+ .+ ......+++.... ..+.||+|||+|.+.... ....+..|+..++....
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~---------~~~~l~~l~~~~~~~~~ 171 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE---------GNDVLYSLLRAHEEYPG 171 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC---------CchHHHHHHHhhhccCC
Confidence 1112 11 1223333333332 346899999999997221 13467777777765532
Q ss_pred CCcEEEEeecCCCC---CCCccccCCCCcc-ccccCCCCCHHHHHHHHHHhhccCC---CCCcccHHHHHHHcCCCC--H
Q 044198 598 KKTVFVIGATNRPD---MIDPALLRPGRLD-QLIYIPLPDEHSRLQIFKSCLRKSP---VSKDIDLKAIAKYTHGFS--G 668 (772)
Q Consensus 598 ~~~v~vi~aTn~~~---~ld~allrpgRf~-~~i~~~~p~~~~r~~Il~~~~~~~~---~~~~~~~~~la~~~~g~s--g 668 (772)
.++.+|+++|.++ .+++.+.+ ||. ..|.|++++.++..+|++..++... .-.+..++.+++.+.+.+ .
T Consensus 172 -~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~ 248 (394)
T PRK00411 172 -ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDA 248 (394)
T ss_pred -CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcH
Confidence 3788899988764 46676665 664 6789999999999999998875421 123344667777774433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhC
Q 044198 669 ADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYA 721 (772)
Q Consensus 669 ~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~ 721 (772)
+.+-.+|+.|+..|..+.. ..|+.+|+..|+.++
T Consensus 249 r~a~~ll~~a~~~a~~~~~-------------------~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 249 RVAIDLLRRAGLIAEREGS-------------------RKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHHHHHHcCC-------------------CCcCHHHHHHHHHHH
Confidence 4445678777776655421 257888887777665
No 144
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=4.2e-13 Score=151.59 Aligned_cols=185 Identities=23% Similarity=0.327 Sum_probs=133.4
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCC--------------
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQA-------------- 522 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~-------------- 522 (772)
....|+++.|++.+++.|...+... ..+..+||+||||||||++|+++|..+.+
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 3457999999999999998776531 23444799999999999999999988753
Q ss_pred ---------cEEEEecccchhcccccchHHHHHHHHHHHh----CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHH
Q 044198 523 ---------NFISIKGPELLTMWFGESEANVRDVFDKARQ----SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLL 589 (772)
Q Consensus 523 ---------~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL 589 (772)
.++.+++++ ..+-..++++.+.+.. ..+.++||||+|.+ +...++.||
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-------------s~~a~naLL 137 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-------------SKSAFNALL 137 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc-------------CHHHHHHHH
Confidence 134444331 1123446666544432 34579999999876 245688899
Q ss_pred HHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCH
Q 044198 590 TEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSG 668 (772)
Q Consensus 590 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 668 (772)
..|+.. ...+++|.+||.++.+.+.+.+ |+. ++.|++|+.++..+.++..+++.++. ++..+..+++.+.| +.
T Consensus 138 k~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dl 211 (504)
T PRK14963 138 KTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AM 211 (504)
T ss_pred HHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 999864 3467777788889999999987 886 89999999999999999988776654 34456777777664 44
Q ss_pred HHHHHHHHHH
Q 044198 669 ADITEICQRA 678 (772)
Q Consensus 669 ~di~~l~~~a 678 (772)
+++.++++.+
T Consensus 212 R~aln~Lekl 221 (504)
T PRK14963 212 RDAESLLERL 221 (504)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 145
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.48 E-value=6.5e-13 Score=136.41 Aligned_cols=209 Identities=20% Similarity=0.370 Sum_probs=140.7
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCc---EEEEecccchhcccccchHHHHHHHHHHHhC-----CCeEEEEcCchhh
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQAN---FISIKGPELLTMWFGESEANVRDVFDKARQS-----APCVLFFDELDSI 567 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~---~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~-----~p~ilfiDEid~l 567 (772)
-.+++|+||||||||+||+.++.....+ |+.+++.. ..-+.+|.+|+.+... ...|||||||+.+
T Consensus 162 ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF 234 (554)
T KOG2028|consen 162 IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF 234 (554)
T ss_pred CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh
Confidence 3469999999999999999999887655 77776654 3357799999988653 3479999999998
Q ss_pred hhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeec--CCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhh
Q 044198 568 AIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGAT--NRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCL 645 (772)
Q Consensus 568 ~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT--n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~ 645 (772)
-... ...||-..+ .+.+++|+|| |..-.|..||++ |+- ++.+.....++...||.+-+
T Consensus 235 NksQ-------------QD~fLP~VE----~G~I~lIGATTENPSFqln~aLlS--RC~-VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 235 NKSQ-------------QDTFLPHVE----NGDITLIGATTENPSFQLNAALLS--RCR-VFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hhhh-------------hhcccceec----cCceEEEecccCCCccchhHHHHh--ccc-eeEeccCCHHHHHHHHHHHH
Confidence 4332 223555443 5578888888 455588999998 885 67777778888888888744
Q ss_pred cc-----C---CCCC------cccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccH
Q 044198 646 RK-----S---PVSK------DIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKK 711 (772)
Q Consensus 646 ~~-----~---~~~~------~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 711 (772)
.. . ++.. +--++.++..++|=.-+.|.++-..+.+...++.. .....++.
T Consensus 295 a~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~----------------~~~~~lSi 358 (554)
T KOG2028|consen 295 ASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQ----------------SSRVLLSI 358 (554)
T ss_pred HhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCC----------------cccceecH
Confidence 21 1 1221 22367778877774444443333332222222211 12347999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhccCCC
Q 044198 712 EHFEESMKYARRSVSDSDVRKYQAFANTLQQSRGFG 747 (772)
Q Consensus 712 ~~~~~al~~~~~s~~~~~~~~y~~~~~~~~~~~~~~ 747 (772)
+|+.++|+.-.---...--+.|.-+..-+++-||..
T Consensus 359 dDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D 394 (554)
T KOG2028|consen 359 DDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSD 394 (554)
T ss_pred HHHHHHHhhccceecccchhHHHHHHHHHHhhcCCc
Confidence 999999987654445556678888888887777653
No 146
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.48 E-value=6.3e-13 Score=144.98 Aligned_cols=187 Identities=22% Similarity=0.314 Sum_probs=124.4
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhC-----CcEEEEecccc
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKGPEL 532 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~-----~~~i~v~~~~l 532 (772)
...|+++.|.+.+++.|...+.. ....+++|+||||||||++|+++++++. .+++.++++++
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 44678899999999888876643 1123699999999999999999999873 35678887765
Q ss_pred hhcc-------------ccc-------chHHHHHHHHHHHh-----CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHH
Q 044198 533 LTMW-------------FGE-------SEANVRDVFDKARQ-----SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQ 587 (772)
Q Consensus 533 ~~~~-------------vg~-------se~~i~~vf~~a~~-----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~ 587 (772)
...+ .+. ....++.+.+.... ..+.+||+||+|.+. ....+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-------------~~~~~~ 144 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-------------EDAQQA 144 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-------------HHHHHH
Confidence 4221 111 01223333333322 224699999999873 233556
Q ss_pred HHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCC
Q 044198 588 LLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGF 666 (772)
Q Consensus 588 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~ 666 (772)
|+..|+..... ..+|.+|+.+..+.+.+.+ |+. .+.+++|+.++..++++..+++.++. ++..++.|++.+.
T Consensus 145 L~~~le~~~~~--~~~Il~~~~~~~~~~~L~s--r~~-~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~-- 217 (337)
T PRK12402 145 LRRIMEQYSRT--CRFIIATRQPSKLIPPIRS--RCL-PLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG-- 217 (337)
T ss_pred HHHHHHhccCC--CeEEEEeCChhhCchhhcC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--
Confidence 77777754432 3345556566667777776 774 78999999999999999988776654 4455777777653
Q ss_pred CHHHHHHHHHHHH
Q 044198 667 SGADITEICQRAC 679 (772)
Q Consensus 667 sg~di~~l~~~a~ 679 (772)
.|++.++....
T Consensus 218 --gdlr~l~~~l~ 228 (337)
T PRK12402 218 --GDLRKAILTLQ 228 (337)
T ss_pred --CCHHHHHHHHH
Confidence 45666555444
No 147
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.6e-13 Score=150.19 Aligned_cols=164 Identities=24% Similarity=0.363 Sum_probs=128.0
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEech------hhh--
Q 044198 189 EDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGP------EIM-- 260 (772)
Q Consensus 189 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~------~~~-- 260 (772)
+|--|+++.+++|.+++...... |-..++-+.|+||||+|||+++++||..++..|++++-. ++.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 46789999999999998863322 112344488999999999999999999999999887642 222
Q ss_pred -hhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccc-------------cCce
Q 044198 261 -SKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKS-------------RAHV 326 (772)
Q Consensus 261 -~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~-------------~~~v 326 (772)
..|+|....++-+.++....+.| +++|||+|.+.......+ .++|++++|..+. -..|
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDP-------asALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDP-------ASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCCh-------HHHHHHhcChhhccchhhhccccccchhhe
Confidence 24778888888888888888888 889999999974322222 2567777775443 2479
Q ss_pred EEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHh
Q 044198 327 MVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHT 370 (772)
Q Consensus 327 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~ 370 (772)
++|+|.|..+.|+++|+. |+.. |+++=+..++...|.+.|+
T Consensus 556 LFicTAN~idtIP~pLlD--RMEv-IelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLD--RMEV-IELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhh--hhhe-eeccCccHHHHHHHHHHhh
Confidence 999999999999999998 8865 8999999999999988775
No 148
>PRK06893 DNA replication initiation factor; Validated
Probab=99.48 E-value=3.1e-13 Score=138.52 Aligned_cols=160 Identities=13% Similarity=0.167 Sum_probs=102.5
Q ss_pred CceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCC
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGS 573 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~ 573 (772)
..++||||||||||+|++++|+++ +.+...+...+. ......+++..+ ...+|+|||++.+.+...
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~~- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNEE- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCChH-
Confidence 348999999999999999999886 334444444321 111123333333 346999999999853311
Q ss_pred CCCCCCchhHHHHHHHHHhcCCCCCC-cEEEEeecCCCCCCC---ccccCCCCccccccCCCCCHHHHHHHHHHhhccCC
Q 044198 574 SVGDGGGVDRIVNQLLTEMDGLSAKK-TVFVIGATNRPDMID---PALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSP 649 (772)
Q Consensus 574 ~~~~~~~~~~~~~~lL~~ld~~~~~~-~v~vi~aTn~~~~ld---~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~ 649 (772)
.. ..|+..++.....+ .++|++++..|..++ +.+.+..++...+.+++||.++|.+|++..+....
T Consensus 109 -------~~---~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 109 -------WE---LAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred -------HH---HHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 12 23444444443333 345566666677665 78877333457889999999999999998886555
Q ss_pred CC-CcccHHHHHHHcCCCCHHHHHHHHHHH
Q 044198 650 VS-KDIDLKAIAKYTHGFSGADITEICQRA 678 (772)
Q Consensus 650 ~~-~~~~~~~la~~~~g~sg~di~~l~~~a 678 (772)
+. ++.-++.|++...| +.+.+.+++...
T Consensus 179 l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 207 (229)
T PRK06893 179 IELSDEVANFLLKRLDR-DMHTLFDALDLL 207 (229)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 54 34446777776654 566666666644
No 149
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=5.9e-13 Score=151.18 Aligned_cols=183 Identities=20% Similarity=0.265 Sum_probs=128.0
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc-------------
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN------------- 523 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~------------- 523 (772)
...+|++|.|++.+++.|...+.. + +.+..+||+||||||||++|+++|+.+.+.
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 345789999999999998877653 1 224579999999999999999999988652
Q ss_pred -----------EEEEecccchhcccccchHHHHHHHHHH----HhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHH
Q 044198 524 -----------FISIKGPELLTMWFGESEANVRDVFDKA----RQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQL 588 (772)
Q Consensus 524 -----------~i~v~~~~l~~~~vg~se~~i~~vf~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~l 588 (772)
++.+++..- ..-..++.+.+.+ ......|+||||+|.+. ...++.|
T Consensus 79 C~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt-------------~~a~naL 139 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT-------------REAFNAL 139 (624)
T ss_pred HHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-------------HHHHHHH
Confidence 333433210 0112334433222 23345799999999982 4457889
Q ss_pred HHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCC
Q 044198 589 LTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFS 667 (772)
Q Consensus 589 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~s 667 (772)
|..|+.. ...+++|++||.++.+.+.+++ |+. ++.|++++.++...+++..+.+..+. ++..++.+++.+.| +
T Consensus 140 Lk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-d 213 (624)
T PRK14959 140 LKTLEEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-S 213 (624)
T ss_pred HHHhhcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999863 3467888888888888888887 886 78999999999999998887765543 34456777776654 3
Q ss_pred HHHHHHHHH
Q 044198 668 GADITEICQ 676 (772)
Q Consensus 668 g~di~~l~~ 676 (772)
.+++-+++.
T Consensus 214 lR~Al~lLe 222 (624)
T PRK14959 214 VRDSMSLLG 222 (624)
T ss_pred HHHHHHHHH
Confidence 344444443
No 150
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.46 E-value=2.8e-12 Score=140.97 Aligned_cols=187 Identities=22% Similarity=0.350 Sum_probs=134.8
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCC--------------
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQA-------------- 522 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~-------------- 522 (772)
....|+++.|++.+++.|.+.+.. + ..+..+|||||||+|||++|+++|..+..
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 446799999999999998877643 1 23456899999999999999999988643
Q ss_pred ----------cEEEEecccchhcccccchHHHHHHHHHHHhC----CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHH
Q 044198 523 ----------NFISIKGPELLTMWFGESEANVRDVFDKARQS----APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQL 588 (772)
Q Consensus 523 ----------~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~l 588 (772)
+++.+++.+ ..+...++.+++.+... ...|++|||+|.+. ....+.|
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~-------------~~~~~~L 137 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS-------------KSAFNAL 137 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-------------HHHHHHH
Confidence 233333321 12234577788776543 23599999999882 3457889
Q ss_pred HHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCC
Q 044198 589 LTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFS 667 (772)
Q Consensus 589 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~s 667 (772)
|..|+.. ...+++|++||.++.+.+++.+ |+. .+.|++|+.++..++++..+++.++. ++..+..+++.+.| +
T Consensus 138 l~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~ 211 (355)
T TIGR02397 138 LKTLEEP--PEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-S 211 (355)
T ss_pred HHHHhCC--ccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999764 3467777788888888888887 885 78999999999999999988776654 33446667776654 5
Q ss_pred HHHHHHHHHHHHH
Q 044198 668 GADITEICQRACK 680 (772)
Q Consensus 668 g~di~~l~~~a~~ 680 (772)
.+.+.+.+..+..
T Consensus 212 ~~~a~~~lekl~~ 224 (355)
T TIGR02397 212 LRDALSLLDQLIS 224 (355)
T ss_pred hHHHHHHHHHHHh
Confidence 5666665555443
No 151
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.46 E-value=2.6e-13 Score=151.91 Aligned_cols=246 Identities=15% Similarity=0.188 Sum_probs=147.4
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh-----CCcEEEEecccchhcccccchH---HHHHHHHHHHhCCCeEEEEcCchhh
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPELLTMWFGESEA---NVRDVFDKARQSAPCVLFFDELDSI 567 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~-----~~~~i~v~~~~l~~~~vg~se~---~i~~vf~~a~~~~p~ilfiDEid~l 567 (772)
..+++|||++|+|||+|++++++++ +..++++++.+++..+...... .+.. |..-. ..+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~~-~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNEI-CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHHh-ccCCEEEEeccccc
Confidence 3569999999999999999999865 4677889998887766543221 2222 22222 23469999999988
Q ss_pred hhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCC---CCccccCCCCcc--ccccCCCCCHHHHHHHHH
Q 044198 568 AIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDM---IDPALLRPGRLD--QLIYIPLPDEHSRLQIFK 642 (772)
Q Consensus 568 ~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~ 642 (772)
.++ +.....|...++.....++.+|+++...|.. +++.+.+ ||. ..+.+.+|+.++|.+|++
T Consensus 219 ~~k-----------~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 219 SYK-----------EKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCC-----------HHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHH
Confidence 432 2334455555555544455555555555654 4677776 886 778899999999999999
Q ss_pred HhhccCCC---CCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH--hhhhccCCCCCCcccccccccHHHHHHH
Q 044198 643 SCLRKSPV---SKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEK--DIKKGQRENPEGAAGEVAEIKKEHFEES 717 (772)
Q Consensus 643 ~~~~~~~~---~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~a 717 (772)
..++..++ -++.-++.|++.+.| +.+.+.++|..+...+....... .....+....+........+|.+.+.++
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~~~~~~~~t~~~I~~~ 364 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIPTSKLGILNVKKIKEV 364 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhccccccCCCCHHHHHHH
Confidence 99976543 233446677776655 78899999888765554431100 0000000000000001113566666666
Q ss_pred HhhCCCCCCHHHH---------HHHHHHHHHHhhccCCCChhhcccCCCC
Q 044198 718 MKYARRSVSDSDV---------RKYQAFANTLQQSRGFGSSAAANNVIPV 758 (772)
Q Consensus 718 l~~~~~s~~~~~~---------~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (772)
.++.-. ++.+++ -.=.++..-+-+.-+--|.++||+.||+
T Consensus 365 Va~~~~-i~~~dl~s~~R~~~i~~~RqiamyL~r~~t~~sl~~IG~~Fgg 413 (450)
T PRK14087 365 VSEKYG-ISVNAIDGKARSKSIVTARHIAMYLTKEILNHTLAQIGEEFGG 413 (450)
T ss_pred HHHHcC-CCHHHHhCCCCCccccHHHHHHHHHHHHHcCCCHHHHHHHhCC
Confidence 655322 222222 1222333333344455688888888875
No 152
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=2.7e-12 Score=145.16 Aligned_cols=184 Identities=21% Similarity=0.284 Sum_probs=132.7
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCC---------------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQA--------------- 522 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~--------------- 522 (772)
+.+|+++.|++.+.+.|...+.. + +.++++||+||+|+|||++|+++|..+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~-----------~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN-----------N-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 44688999999999988876642 1 23466999999999999999999998743
Q ss_pred ---------cEEEEecccchhcccccchHHHHHHHHHHHhC----CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHH
Q 044198 523 ---------NFISIKGPELLTMWFGESEANVRDVFDKARQS----APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLL 589 (772)
Q Consensus 523 ---------~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL 589 (772)
.++.+++... -+-..++.+.+.+... ...|++|||+|.+- ....+.||
T Consensus 80 r~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-------------~~A~NaLL 140 (605)
T PRK05896 80 ESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-------------TSAWNALL 140 (605)
T ss_pred HHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-------------HHHHHHHH
Confidence 2233332210 1223467776655443 23699999999882 33578899
Q ss_pred HHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCH
Q 044198 590 TEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSG 668 (772)
Q Consensus 590 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 668 (772)
..|+.. ...+++|++|+.++.|.+.+++ |+. .+.|++|+.++....++..+.+.+.. ++..+..+++.+.| +.
T Consensus 141 KtLEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dl 214 (605)
T PRK05896 141 KTLEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SL 214 (605)
T ss_pred HHHHhC--CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 999964 3467788888889999999987 986 89999999999999998887665543 34456777777765 56
Q ss_pred HHHHHHHHHH
Q 044198 669 ADITEICQRA 678 (772)
Q Consensus 669 ~di~~l~~~a 678 (772)
+++.+++..+
T Consensus 215 R~AlnlLekL 224 (605)
T PRK05896 215 RDGLSILDQL 224 (605)
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 153
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=9.7e-13 Score=150.61 Aligned_cols=185 Identities=17% Similarity=0.284 Sum_probs=133.4
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc--------------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN-------------- 523 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~-------------- 523 (772)
.-+|+++.|++.+.+.|...+..- +.+..+||+||+|||||++|+++|+.+++.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 346889999999999988876531 224557999999999999999999987641
Q ss_pred ---------------EEEEecccchhcccccchHHHHHHHHHHHhC----CCeEEEEcCchhhhhccCCCCCCCCchhHH
Q 044198 524 ---------------FISIKGPELLTMWFGESEANVRDVFDKARQS----APCVLFFDELDSIAIQRGSSVGDGGGVDRI 584 (772)
Q Consensus 524 ---------------~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~ 584 (772)
++.+++.+ ...-..++++.+.+... ...|++|||+|.+. ...
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls-------------~~a 140 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT-------------NTA 140 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC-------------HHH
Confidence 22232221 01223567777665432 24699999999983 445
Q ss_pred HHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHc
Q 044198 585 VNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYT 663 (772)
Q Consensus 585 ~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~ 663 (772)
.|.||..|+.. ...+.+|++|+.++.+.+.+++ |+ .++.|..++.++..+.++..+.+.++. ++..+..|++.+
T Consensus 141 ~NaLLKtLEEP--P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLEEP--PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhcccC--CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 88899999863 3466677777778888888887 88 499999999999999998888766655 334477888877
Q ss_pred CCCCHHHHHHHHHHHH
Q 044198 664 HGFSGADITEICQRAC 679 (772)
Q Consensus 664 ~g~sg~di~~l~~~a~ 679 (772)
.| +.+++.+++..+.
T Consensus 216 ~G-slR~al~lLdq~i 230 (618)
T PRK14951 216 RG-SMRDALSLTDQAI 230 (618)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 66 7777777765443
No 154
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.45 E-value=1.3e-12 Score=148.99 Aligned_cols=196 Identities=17% Similarity=0.273 Sum_probs=123.2
Q ss_pred ccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh----------CCcEEEEeccc
Q 044198 462 ADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISIKGPE 531 (772)
Q Consensus 462 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~----------~~~~i~v~~~~ 531 (772)
+.|.+-++-.+.|...+.-.+. +-.+...++++|+||||||++++.+..++ .+.++.|++..
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 3455555555555444432111 22233335799999999999999998765 25578898854
Q ss_pred chhcc----------ccc-------chHHHHHHHHHHH--hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHh
Q 044198 532 LLTMW----------FGE-------SEANVRDVFDKAR--QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEM 592 (772)
Q Consensus 532 l~~~~----------vg~-------se~~i~~vf~~a~--~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~l 592 (772)
+...+ .|. +...+..+|.... .....||+|||||.|... .+.++-.|+...
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK----------~QDVLYnLFR~~ 896 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK----------TQKVLFTLFDWP 896 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc----------HHHHHHHHHHHh
Confidence 32221 011 2234556666542 223579999999999643 244555555554
Q ss_pred cCCCCCCcEEEEeecCC---CCCCCccccCCCCcc-ccccCCCCCHHHHHHHHHHhhccCC-CCCcccHHHHHHHcCCCC
Q 044198 593 DGLSAKKTVFVIGATNR---PDMIDPALLRPGRLD-QLIYIPLPDEHSRLQIFKSCLRKSP-VSKDIDLKAIAKYTHGFS 667 (772)
Q Consensus 593 d~~~~~~~v~vi~aTn~---~~~ld~allrpgRf~-~~i~~~~p~~~~r~~Il~~~~~~~~-~~~~~~~~~la~~~~g~s 667 (772)
. ....+++|||++|. ++.|+|.+.+ ||. ..|.|++|+.+++.+||+..+.... +-.+.-++.+|+.+...+
T Consensus 897 ~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~S 972 (1164)
T PTZ00112 897 T--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVS 972 (1164)
T ss_pred h--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcC
Confidence 3 23567999999986 5677888876 775 3588899999999999999887642 223344667777554443
Q ss_pred HHHHHH---HHHHHHH
Q 044198 668 GADITE---ICQRACK 680 (772)
Q Consensus 668 g~di~~---l~~~a~~ 680 (772)
+|++. +|+.|+.
T Consensus 973 -GDARKALDILRrAgE 987 (1164)
T PTZ00112 973 -GDIRKALQICRKAFE 987 (1164)
T ss_pred -CHHHHHHHHHHHHHh
Confidence 34444 5555553
No 155
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4e-13 Score=149.85 Aligned_cols=164 Identities=27% Similarity=0.364 Sum_probs=128.0
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEech------hhh--
Q 044198 189 EDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGP------EIM-- 260 (772)
Q Consensus 189 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~------~~~-- 260 (772)
.|--|+++.+++|.+++....+.. . ....=++|+||||+|||+|+++||+.++..|+.+.-. ++.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~----~---~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTK----K---LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhc----c---CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 457899999999999987633221 1 1122388999999999999999999999999988643 332
Q ss_pred -hhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccc-------------cCce
Q 044198 261 -SKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKS-------------RAHV 326 (772)
Q Consensus 261 -~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~-------------~~~v 326 (772)
..|.|....++-+-+..+....| ++++||||.+...-...+ .++|+..+|..++ -++|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDP-------aSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDP-------ASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCCh-------HHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 24778888888888888888888 889999999976543333 2556666664332 2579
Q ss_pred EEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHh
Q 044198 327 MVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHT 370 (772)
Q Consensus 327 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~ 370 (772)
++|+|.|..+.|+.+|+. |+.. |+++-+++++..+|.+.|+
T Consensus 468 mFiaTANsl~tIP~PLlD--RMEi-I~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLD--RMEV-IRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhc--ceee-eeecCCChHHHHHHHHHhc
Confidence 999999999999999998 8864 9999999999999999875
No 156
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=2.2e-12 Score=144.55 Aligned_cols=183 Identities=20% Similarity=0.288 Sum_probs=128.8
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCC---------------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQA--------------- 522 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~--------------- 522 (772)
..+|++|.|++.+++.|...+.. + +.+..+|||||||+|||++|+++|+.+.+
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~-----------~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF-----------N-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 45799999999999988877653 1 23456999999999999999999988743
Q ss_pred ----------cEEEEecccchhcccccchHHHHHHHHHH----HhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHH
Q 044198 523 ----------NFISIKGPELLTMWFGESEANVRDVFDKA----RQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQL 588 (772)
Q Consensus 523 ----------~~i~v~~~~l~~~~vg~se~~i~~vf~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~l 588 (772)
.++.+++... . +-..++++-+.. ......|+||||+|.+. ....+.|
T Consensus 81 C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt-------------~~~~n~L 141 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT-------------KEAFNSL 141 (451)
T ss_pred HHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC-------------HHHHHHH
Confidence 2333433221 1 112344433222 22456799999999883 3457889
Q ss_pred HHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCC
Q 044198 589 LTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFS 667 (772)
Q Consensus 589 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~s 667 (772)
|..|+.. ...+++|++||.++.|.+++.+ |+. .++|+.++.++....++..+++.++. ++..++.|++.+.| +
T Consensus 142 Lk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-d 215 (451)
T PRK06305 142 LKTLEEP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-S 215 (451)
T ss_pred HHHhhcC--CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999974 3466777788888889999887 886 79999999999999988887766554 34457778877654 4
Q ss_pred HHHHHHHHHH
Q 044198 668 GADITEICQR 677 (772)
Q Consensus 668 g~di~~l~~~ 677 (772)
.+++.+.+..
T Consensus 216 lr~a~~~Lek 225 (451)
T PRK06305 216 LRDAESLYDY 225 (451)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 157
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.44 E-value=1.6e-12 Score=133.71 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=113.1
Q ss_pred CceEEeCCCCCchhHHHHHHHHHhC---CcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCC
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGS 573 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~~---~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~ 573 (772)
.+++|+||||||||+|++++++... .....+...+... ...++.+..... .+|+|||++.+.+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~~--dlliiDdi~~~~~~~-- 113 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQL--SLVCIDNIECIAGDE-- 113 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhhC--CEEEEeChhhhcCCH--
Confidence 4699999999999999999998764 3344444444221 112222222222 589999999985321
Q ss_pred CCCCCCchhHHHHHHHHHhcCCCCCCc-EEEEeecCCCCC---CCccccCCCCcc--ccccCCCCCHHHHHHHHHHhhcc
Q 044198 574 SVGDGGGVDRIVNQLLTEMDGLSAKKT-VFVIGATNRPDM---IDPALLRPGRLD--QLIYIPLPDEHSRLQIFKSCLRK 647 (772)
Q Consensus 574 ~~~~~~~~~~~~~~lL~~ld~~~~~~~-v~vi~aTn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~~~ 647 (772)
.....|...++.....++ .+++++++.|.. +.|.+.+ |+. .++.+++|+.++|.+|++.....
T Consensus 114 ---------~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~ 182 (235)
T PRK08084 114 ---------LWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARL 182 (235)
T ss_pred ---------HHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHH
Confidence 112223333333222333 456666666665 5688887 986 79999999999999999986765
Q ss_pred CCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHh
Q 044198 648 SPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMK 719 (772)
Q Consensus 648 ~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~ 719 (772)
.++. ++.-++.|++...| +.+.+.+++......++.+. .+||.+.+++++.
T Consensus 183 ~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~~--------------------~~it~~~~k~~l~ 234 (235)
T PRK08084 183 RGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASITAQ--------------------RKLTIPFVKEILK 234 (235)
T ss_pred cCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHhcC--------------------CCCCHHHHHHHHc
Confidence 5554 34446777777654 67777777776432222111 2588888877763
No 158
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=3.7e-12 Score=144.10 Aligned_cols=185 Identities=21% Similarity=0.256 Sum_probs=130.2
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCC---------------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQA--------------- 522 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~--------------- 522 (772)
..+|+++.|++.+.+.|...+.. + +.+..+||+||+|+|||++|+++|..+.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~-----------~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALET-----------Q-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 35688999999999888877653 1 23445899999999999999999998754
Q ss_pred ---------cEEEEecccchhcccccchHHHHHHHHHHHh----CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHH
Q 044198 523 ---------NFISIKGPELLTMWFGESEANVRDVFDKARQ----SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLL 589 (772)
Q Consensus 523 ---------~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL 589 (772)
.++.+++..- . .-..++++.+.+.. ....|+||||+|.+ +....+.||
T Consensus 80 ~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-------------s~~a~naLL 140 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHML-------------SKQSFNALL 140 (546)
T ss_pred HHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-------------cHHHHHHHH
Confidence 2233332211 1 12345555554432 34579999999988 245688999
Q ss_pred HHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCH
Q 044198 590 TEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSG 668 (772)
Q Consensus 590 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 668 (772)
..|+.. ...+.+|++|+.+..+-+.+++ |+ ..++|.+++.++..+.++..+++.++. ++..+..+++.+.| +.
T Consensus 141 K~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dl 214 (546)
T PRK14957 141 KTLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SL 214 (546)
T ss_pred HHHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 999964 3456666666667877777776 88 499999999999988888887766554 34446677776654 66
Q ss_pred HHHHHHHHHHH
Q 044198 669 ADITEICQRAC 679 (772)
Q Consensus 669 ~di~~l~~~a~ 679 (772)
+++.+++..+.
T Consensus 215 R~alnlLek~i 225 (546)
T PRK14957 215 RDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHHH
Confidence 67666666554
No 159
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.43 E-value=4.7e-13 Score=144.43 Aligned_cols=246 Identities=17% Similarity=0.201 Sum_probs=164.6
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHh-----CCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhh
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAI 569 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~-----~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~ 569 (772)
+...++||||+|+|||+|++|+++.. +..++.+...+++..++-....+-.+-|++-+ .-.+++||+|+.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 34569999999999999999999887 34578888888887776655555556777777 446999999999965
Q ss_pred ccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCC---ccccCCCCcc--ccccCCCCCHHHHHHHHHHh
Q 044198 570 QRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMID---PALLRPGRLD--QLIYIPLPDEHSRLQIFKSC 644 (772)
Q Consensus 570 ~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld---~allrpgRf~--~~i~~~~p~~~~r~~Il~~~ 644 (772)
+ ++...+|...++.+...++.+|+.+...|..+. |.|.+ ||. .++.+.+||.+.|.+|++..
T Consensus 190 k-----------~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 190 K-----------ERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKK 256 (408)
T ss_pred C-----------hhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHH
Confidence 4 344666777777777677788888888888655 67776 988 78888999999999999998
Q ss_pred hccCCCCCccc-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCC
Q 044198 645 LRKSPVSKDID-LKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARR 723 (772)
Q Consensus 645 ~~~~~~~~~~~-~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~ 723 (772)
....++.-+.+ +..+|.... -+.+++..++......|........+...+....+....... ||.+++.++.++.-.
T Consensus 257 a~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~~-itie~I~~~Va~~y~ 334 (408)
T COG0593 257 AEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGEK-ITIEDIQKIVAEYYN 334 (408)
T ss_pred HHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhccccc-CCHHHHHHHHHHHhC
Confidence 87777664333 555665543 477888888877766665443211111111000000011113 777777777665322
Q ss_pred --------CCCHHHHHHHHHHHHHHhhccCCCChhhcccCCC
Q 044198 724 --------SVSDSDVRKYQAFANTLQQSRGFGSSAAANNVIP 757 (772)
Q Consensus 724 --------s~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 757 (772)
+-....+-.=.++..-+.+.-.--|.++||+.|+
T Consensus 335 v~~~dl~s~~R~~~i~~~RqiamyL~r~lt~~Slp~IG~~Fg 376 (408)
T COG0593 335 VKVSDLLSKSRTRNIVRPRQIAMYLARELTNLSLPEIGKAFG 376 (408)
T ss_pred CCHHHhhccccccccchHHHHHHHHHHHHccCcHHHHHHHhC
Confidence 1112223333445555555566678888888876
No 160
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=3.4e-12 Score=145.54 Aligned_cols=186 Identities=20% Similarity=0.297 Sum_probs=133.2
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc--------------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN-------------- 523 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~-------------- 523 (772)
..+|+++.|++.+++.|...+... +.++.+||+||||+|||++|+++|..+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 347899999999999888776531 224458999999999999999999988652
Q ss_pred ----------EEEEecccchhcccccchHHHHHHHHHHHhC----CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHH
Q 044198 524 ----------FISIKGPELLTMWFGESEANVRDVFDKARQS----APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLL 589 (772)
Q Consensus 524 ----------~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL 589 (772)
++.++++. ...-..++++.+.+... ...|+||||+|.+ +....|.||
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-------------s~~a~naLL 140 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-------------SKSAFNAML 140 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC-------------CHHHHHHHH
Confidence 22222211 11234577777766432 2469999999988 245688899
Q ss_pred HHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCH
Q 044198 590 TEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSG 668 (772)
Q Consensus 590 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 668 (772)
..|+.. ...+.+|++|+.++.+.+.+++ |+ ..+.|..++.++..+.++..+++.++. .+..+..+++.+.| +.
T Consensus 141 K~LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-sl 214 (527)
T PRK14969 141 KTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SM 214 (527)
T ss_pred HHHhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 999963 3466777777778877777776 88 599999999999988888877665554 23346677777654 67
Q ss_pred HHHHHHHHHHHH
Q 044198 669 ADITEICQRACK 680 (772)
Q Consensus 669 ~di~~l~~~a~~ 680 (772)
+++.+++..|..
T Consensus 215 r~al~lldqai~ 226 (527)
T PRK14969 215 RDALSLLDQAIA 226 (527)
T ss_pred HHHHHHHHHHHH
Confidence 777777766543
No 161
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.43 E-value=4.9e-12 Score=126.57 Aligned_cols=191 Identities=24% Similarity=0.387 Sum_probs=136.5
Q ss_pred cCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccc
Q 044198 456 VPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPEL 532 (772)
Q Consensus 456 ~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l 532 (772)
...+.++++.|++..|+.|.+.....+. | .|..++||+|+.|||||+++|++..++ +..+|.|...++
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQ--------G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHc--------C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 3568899999999999999877654332 2 367889999999999999999999877 567788877776
Q ss_pred hhcccccchHHHHHHHHHHHhC-CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCC--CCCCcEEEEeecCC
Q 044198 533 LTMWFGESEANVRDVFDKARQS-APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGL--SAKKTVFVIGATNR 609 (772)
Q Consensus 533 ~~~~vg~se~~i~~vf~~a~~~-~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~--~~~~~v~vi~aTn~ 609 (772)
. .+..+++..+.. .+-|||+|++. + +..+.-...|-..|||- ....+|++.+|+|+
T Consensus 92 ~---------~l~~l~~~l~~~~~kFIlf~DDLs-F-----------e~~d~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 92 G---------DLPELLDLLRDRPYKFILFCDDLS-F-----------EEGDTEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred c---------cHHHHHHHHhcCCCCEEEEecCCC-C-----------CCCcHHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 3 345555554432 34699999863 1 11233457788888886 34678999999998
Q ss_pred CCCCCcc----------ccCC-----------CCccccccCCCCCHHHHHHHHHHhhccCCCCCc-ccHH----HHHHHc
Q 044198 610 PDMIDPA----------LLRP-----------GRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKD-IDLK----AIAKYT 663 (772)
Q Consensus 610 ~~~ld~a----------llrp-----------gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~----~la~~~ 663 (772)
...+.+- -++| .||...|.|.+||.++-.+|.+.++.+.++.-+ .++. ..|..-
T Consensus 151 RHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~r 230 (249)
T PF05673_consen 151 RHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRR 230 (249)
T ss_pred hhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHc
Confidence 6544331 1222 299999999999999999999999988776643 2222 223334
Q ss_pred CCCCHHHHHHHHH
Q 044198 664 HGFSGADITEICQ 676 (772)
Q Consensus 664 ~g~sg~di~~l~~ 676 (772)
.|.||+--++-+.
T Consensus 231 g~RSGRtA~QF~~ 243 (249)
T PF05673_consen 231 GGRSGRTARQFID 243 (249)
T ss_pred CCCCHHHHHHHHH
Confidence 5677766555544
No 162
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=4.3e-12 Score=144.90 Aligned_cols=185 Identities=20% Similarity=0.268 Sum_probs=131.2
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc--------------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN-------------- 523 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~-------------- 523 (772)
.-+|++|.|++.+++.|...+.. + +.++.+||+||+|||||++|+++|+.+.+.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 34689999999999999887653 1 234457999999999999999999887531
Q ss_pred ------------EEEEecccchhcccccchHHHHHHHHHHH----hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHH
Q 044198 524 ------------FISIKGPELLTMWFGESEANVRDVFDKAR----QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQ 587 (772)
Q Consensus 524 ------------~i~v~~~~l~~~~vg~se~~i~~vf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~ 587 (772)
++.++++.. .+-..++++-+.+. .....|++|||+|.+ +....|.
T Consensus 77 ~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L-------------t~~A~NA 137 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-------------TTAGFNA 137 (584)
T ss_pred HHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC-------------CHHHHHH
Confidence 223333211 01234455444432 233469999999998 2446889
Q ss_pred HHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCC
Q 044198 588 LLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGF 666 (772)
Q Consensus 588 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~ 666 (772)
||..|+.. ...+++|++|+.++.|.+.+.+ |+. ++.|..++.++..+.++..+++.++. ++..+..+++.+. -
T Consensus 138 LLK~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc~-~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~-G 211 (584)
T PRK14952 138 LLKIVEEP--PEHLIFIFATTEPEKVLPTIRS--RTH-HYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG-G 211 (584)
T ss_pred HHHHHhcC--CCCeEEEEEeCChHhhHHHHHH--hce-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-C
Confidence 99999953 4577888888888898899887 875 89999999999998998888776654 3334555666554 4
Q ss_pred CHHHHHHHHHHHH
Q 044198 667 SGADITEICQRAC 679 (772)
Q Consensus 667 sg~di~~l~~~a~ 679 (772)
+.+++.+++..+.
T Consensus 212 dlR~aln~Ldql~ 224 (584)
T PRK14952 212 SPRDTLSVLDQLL 224 (584)
T ss_pred CHHHHHHHHHHHH
Confidence 6677777776654
No 163
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=4.1e-12 Score=150.45 Aligned_cols=185 Identities=20% Similarity=0.244 Sum_probs=130.7
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc--------------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN-------------- 523 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~-------------- 523 (772)
..+|++|+|++.+++.|...+.. + +..+.+||+||+|||||++|+++|+.+.+.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~-----------~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 45789999999999998877653 1 223458999999999999999999998641
Q ss_pred ------------EEEEecccchhcccccchHHHHHHHHHH----HhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHH
Q 044198 524 ------------FISIKGPELLTMWFGESEANVRDVFDKA----RQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQ 587 (772)
Q Consensus 524 ------------~i~v~~~~l~~~~vg~se~~i~~vf~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~ 587 (772)
++.+++... ..-..+|++-+.+ ......|+||||+|.| +....|.
T Consensus 79 ~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-------------t~~a~Na 139 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMV-------------TPQGFNA 139 (824)
T ss_pred HHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhc-------------CHHHHHH
Confidence 223332211 0123344443332 3344579999999999 3456889
Q ss_pred HHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCC
Q 044198 588 LLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGF 666 (772)
Q Consensus 588 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~ 666 (772)
||..|+... ..+++|++|+.++.|-+.+.+ |+. ++.|..++.++..++++..+++.++. ++..+..|++...|
T Consensus 140 LLK~LEEpP--~~~~fIl~tt~~~kLl~TIrS--Rc~-~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG- 213 (824)
T PRK07764 140 LLKIVEEPP--EHLKFIFATTEPDKVIGTIRS--RTH-HYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG- 213 (824)
T ss_pred HHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--hee-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 999999654 467777778888888888887 885 88999999999999999888766654 23345667776654
Q ss_pred CHHHHHHHHHHHH
Q 044198 667 SGADITEICQRAC 679 (772)
Q Consensus 667 sg~di~~l~~~a~ 679 (772)
+.+++.+++....
T Consensus 214 dlR~Al~eLEKLi 226 (824)
T PRK07764 214 SVRDSLSVLDQLL 226 (824)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666555443
No 164
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=5.6e-12 Score=145.31 Aligned_cols=191 Identities=24% Similarity=0.311 Sum_probs=135.3
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEE----------
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFIS---------- 526 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~---------- 526 (772)
.+.+|+++.|++.+.+.|...+..- +.++.+||+||+|+|||++|+++|..+.+.--.
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 4457899999999999988877531 234568999999999999999999887542100
Q ss_pred ---Eecccchhcccc---cchHHHHHHHHHHHhC----CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC
Q 044198 527 ---IKGPELLTMWFG---ESEANVRDVFDKARQS----APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS 596 (772)
Q Consensus 527 ---v~~~~l~~~~vg---~se~~i~~vf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~ 596 (772)
-...+++. .-+ .+...++++.+.+... ...|++|||+|.+. ....+.||..|+..
T Consensus 81 ~~~~~~~Dvie-idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT-------------~~A~NALLKtLEEP- 145 (725)
T PRK07133 81 ENVNNSLDIIE-MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS-------------KSAFNALLKTLEEP- 145 (725)
T ss_pred HhhcCCCcEEE-EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC-------------HHHHHHHHHHhhcC-
Confidence 00011110 001 1234578887776543 34799999999883 34688899999964
Q ss_pred CCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCC-cccHHHHHHHcCCCCHHHHHHHH
Q 044198 597 AKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSK-DIDLKAIAKYTHGFSGADITEIC 675 (772)
Q Consensus 597 ~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~~~~la~~~~g~sg~di~~l~ 675 (772)
...+++|++|+.++.|.+.+++ |+. ++.|.+|+.++..++++..+.+.++.- +..+..+|+.+.| +.+++..++
T Consensus 146 -P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslL 220 (725)
T PRK07133 146 -PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIA 220 (725)
T ss_pred -CCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 4567778888889999999887 996 899999999999999988877665542 3336677776654 556666665
Q ss_pred HHHH
Q 044198 676 QRAC 679 (772)
Q Consensus 676 ~~a~ 679 (772)
..+.
T Consensus 221 ekl~ 224 (725)
T PRK07133 221 EQVS 224 (725)
T ss_pred HHHH
Confidence 5543
No 165
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.42 E-value=1.7e-12 Score=133.07 Aligned_cols=166 Identities=16% Similarity=0.225 Sum_probs=109.4
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhcc
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQR 571 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r 571 (772)
.+.+++|+||+|||||++|++++..+ +.+++.++++++.... ..++..... ..+|+|||+|.+....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~--~~lLvIDdi~~l~~~~ 106 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLEQ--ADLVCLDDVEAIAGQP 106 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhccc--CCEEEEeChhhhcCCh
Confidence 45679999999999999999999876 4678888888765321 233333322 3599999999883210
Q ss_pred CCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCC---ccccCCCCc--cccccCCCCCHHHHHHHHHHhhc
Q 044198 572 GSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMID---PALLRPGRL--DQLIYIPLPDEHSRLQIFKSCLR 646 (772)
Q Consensus 572 ~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld---~allrpgRf--~~~i~~~~p~~~~r~~Il~~~~~ 646 (772)
.....|...++.....+..+|+.++..+..++ +.+.+ |+ ...+.+|+|+.+++..+++.++.
T Consensus 107 -----------~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 107 -----------EWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred -----------HHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 11233444444332223345554444554433 56665 66 47899999999999999998776
Q ss_pred cCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 044198 647 KSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIR 684 (772)
Q Consensus 647 ~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~ 684 (772)
+..+. ++.-+..|++.. +-+.+++.++++.+...+..
T Consensus 174 ~~~~~~~~~~l~~L~~~~-~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 174 RRGLQLPDEVADYLLRHG-SRDMGSLMALLDALDRASLA 211 (226)
T ss_pred HcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH
Confidence 55443 333467777753 45789999998887655444
No 166
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=3.9e-12 Score=146.75 Aligned_cols=184 Identities=21% Similarity=0.298 Sum_probs=134.5
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc--------------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN-------------- 523 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~-------------- 523 (772)
..+|++|.|++++++.|...+.. + +.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 35789999999999999887653 1 234568999999999999999999987532
Q ss_pred ----------EEEEecccchhcccccchHHHHHHHHHHHhC----CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHH
Q 044198 524 ----------FISIKGPELLTMWFGESEANVRDVFDKARQS----APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLL 589 (772)
Q Consensus 524 ----------~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL 589 (772)
++.+++..- .+-..++++.+.+... ...|++|||+|.+. ....|.||
T Consensus 80 ~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-------------~~a~naLL 140 (576)
T PRK14965 80 VEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-------------TNAFNALL 140 (576)
T ss_pred HHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-------------HHHHHHHH
Confidence 333433221 1234577777665432 23699999999882 45688999
Q ss_pred HHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCH
Q 044198 590 TEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSG 668 (772)
Q Consensus 590 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 668 (772)
..|+.. ..++++|++|+.++.|.+.+++ |+. .+.|..++.++....++..+++.++. ++..+..+++.+.| +-
T Consensus 141 k~LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~l 214 (576)
T PRK14965 141 KTLEEP--PPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SM 214 (576)
T ss_pred HHHHcC--CCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CH
Confidence 999953 4577888888889999999887 886 89999999998888888877766554 34456777777765 55
Q ss_pred HHHHHHHHHH
Q 044198 669 ADITEICQRA 678 (772)
Q Consensus 669 ~di~~l~~~a 678 (772)
+++.+++..+
T Consensus 215 r~al~~Ldql 224 (576)
T PRK14965 215 RDSLSTLDQV 224 (576)
T ss_pred HHHHHHHHHH
Confidence 5655555444
No 167
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.42 E-value=2.9e-12 Score=131.55 Aligned_cols=176 Identities=12% Similarity=0.152 Sum_probs=116.2
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhc
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQ 570 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~ 570 (772)
....+++|+||+|||||+||+++++.. +.+++.+++.++... +.. .....+++|||+|.+..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~~--~~~~~~liiDdi~~l~~- 104 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FDF--DPEAELYAVDDVERLDD- 104 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hhh--cccCCEEEEeChhhcCc-
Confidence 345679999999999999999999875 567788877764321 111 12346999999998721
Q ss_pred cCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCC-CC--CCCccccCCCCc--cccccCCCCCHHHHHHHHHHhh
Q 044198 571 RGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNR-PD--MIDPALLRPGRL--DQLIYIPLPDEHSRLQIFKSCL 645 (772)
Q Consensus 571 r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~-~~--~ld~allrpgRf--~~~i~~~~p~~~~r~~Il~~~~ 645 (772)
.....|+..++........++|.+++. |. .+.+.+.+ || ...+.+|+|+.+++..+++...
T Consensus 105 ------------~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 105 ------------AQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred ------------hHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 123345555554433444434445443 32 34566665 77 4699999999999999999877
Q ss_pred ccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHh
Q 044198 646 RKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMK 719 (772)
Q Consensus 646 ~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~ 719 (772)
.+..+. ++.-+..|++...| +.+++.++++.....|.... .+||...+.+++.
T Consensus 171 ~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~~~--------------------~~i~~~~~~~~l~ 224 (227)
T PRK08903 171 AERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLEQK--------------------RPVTLPLLREMLA 224 (227)
T ss_pred HHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhC--------------------CCCCHHHHHHHHh
Confidence 665554 33346677775443 77888888877544443332 2689999888875
No 168
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.41 E-value=1.8e-12 Score=135.62 Aligned_cols=132 Identities=26% Similarity=0.332 Sum_probs=96.0
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecc------cchhcccccchHHHH---------------------HHH
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQANFISIKGP------ELLTMWFGESEANVR---------------------DVF 548 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~------~l~~~~vg~se~~i~---------------------~vf 548 (772)
..++||+||||||||++|+++|..++.+++.+++. ++++.|.|.....+. .++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 45799999999999999999999999999988764 444444332222111 122
Q ss_pred HHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC--------------CCCcEEEEeecCCCC---
Q 044198 549 DKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS--------------AKKTVFVIGATNRPD--- 611 (772)
Q Consensus 549 ~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~--------------~~~~v~vi~aTn~~~--- 611 (772)
..++. ..+++|||++.+ ...+.+.|+..|+... ...++.||+|+|...
T Consensus 101 ~A~~~--g~~lllDEi~r~-------------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g 165 (262)
T TIGR02640 101 LAVRE--GFTLVYDEFTRS-------------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAG 165 (262)
T ss_pred HHHHc--CCEEEEcchhhC-------------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccc
Confidence 22222 259999999986 2456777888886421 123677999999763
Q ss_pred --CCCccccCCCCccccccCCCCCHHHHHHHHHHhh
Q 044198 612 --MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCL 645 (772)
Q Consensus 612 --~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~ 645 (772)
.+++++++ ||- .++++.|+.++-.+|++.+.
T Consensus 166 ~~~l~~aL~~--R~~-~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 166 VHETQDALLD--RLI-TIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred eecccHHHHh--hcE-EEECCCCCHHHHHHHHHHhh
Confidence 56889998 994 89999999999999999875
No 169
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=5.9e-12 Score=144.00 Aligned_cols=186 Identities=22% Similarity=0.282 Sum_probs=134.1
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc-------------
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN------------- 523 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~------------- 523 (772)
...+|++|.|++.+++.|...+.. + ..++.+|||||+|+|||++|+++|+.+.+.
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 345789999999999998887753 1 234569999999999999999999987542
Q ss_pred -----------EEEEecccchhcccccchHHHHHHHHHHH----hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHH
Q 044198 524 -----------FISIKGPELLTMWFGESEANVRDVFDKAR----QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQL 588 (772)
Q Consensus 524 -----------~i~v~~~~l~~~~vg~se~~i~~vf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~l 588 (772)
++.+++.. ..+-..++++.+.+. .....|++|||+|.+ +....+.|
T Consensus 79 C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-------------s~~a~naL 139 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML-------------SNSAFNAL 139 (563)
T ss_pred HHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-------------CHHHHHHH
Confidence 22232211 011234555554432 334579999999988 24568889
Q ss_pred HHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCC
Q 044198 589 LTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFS 667 (772)
Q Consensus 589 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~s 667 (772)
|..|+. +...+++|++|+.++.|.+++.+ |+. .+.|.+++.++..++++..+++.++. ++..+..|++.+.| +
T Consensus 140 LK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-d 213 (563)
T PRK06647 140 LKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-S 213 (563)
T ss_pred HHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 999985 34567777788888888889887 887 78999999999999998888665554 34556777877665 6
Q ss_pred HHHHHHHHHHHH
Q 044198 668 GADITEICQRAC 679 (772)
Q Consensus 668 g~di~~l~~~a~ 679 (772)
.+++.+++..+.
T Consensus 214 lR~alslLdkli 225 (563)
T PRK06647 214 VRDAYTLFDQVV 225 (563)
T ss_pred HHHHHHHHHHHH
Confidence 677777766543
No 170
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.40 E-value=1.1e-11 Score=136.85 Aligned_cols=167 Identities=20% Similarity=0.295 Sum_probs=113.0
Q ss_pred CccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---------CeEEEEec
Q 044198 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG---------CYFLCING 256 (772)
Q Consensus 186 ~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~---------~~~~~v~~ 256 (772)
...+.+.|.+++++.|...+...+.. ..+.+++|+||||||||++++.+++.+. ..+++++|
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 33457899999999998888642221 2346799999999999999999998652 46788888
Q ss_pred hhhhh----------hcc--c--------chHHHHHHHHHHHHH-cCCceEEeccccccccCCCCCchhhHHHHHHHHHH
Q 044198 257 PEIMS----------KMA--G--------ESESNLREAFNVAEK-NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLT 315 (772)
Q Consensus 257 ~~~~~----------~~~--g--------~~~~~l~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~ 315 (772)
....+ ... + .....+..+++.... ..+.+++|||+|.+.... ..++..|..
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--------~~~L~~l~~ 154 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--------DDLLYQLSR 154 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--------cHHHHhHhc
Confidence 54321 110 0 112233445554433 446789999999997321 123444444
Q ss_pred Hhhcc-cccCceEEEEeeCCCC---CCChhhhccCCce-eEEEeCCCCHHHHHHHHHHHhc
Q 044198 316 LMDGM-KSRAHVMVIGATNRPN---SIDPALRRSGRFD-KEIDIGVPDEVGRLEVLRIHTK 371 (772)
Q Consensus 316 lld~~-~~~~~v~vI~atn~~~---~ld~al~r~gRf~-~~i~i~~p~~~~r~~Il~~~~~ 371 (772)
+.+.. ....++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++....
T Consensus 155 ~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 155 ARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred cccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 42211 1235788899998875 57888876 774 6799999999999999998765
No 171
>PF02359 CDC48_N: Cell division protein 48 (CDC48), N-terminal domain; InterPro: IPR003338 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The VAT protein of the archaebacterium Thermoplasma acidophilum, like all other members of the Cdc48/p97 family of AAA ATPases, has two ATPase domains and a 185-residue amino-terminal substrate-recognition domain, VAT-N. VAT shows activity in protein folding and unfolding and thus shares the common function of these ATPases in disassembly and/or degradation of protein complexes. VAT-N is composed of two equally sized subdomains. The amino-terminal subdomain VAT-Nn forms a double-psi beta-barrel whose pseudo-twofold symmetry is mirrored by an internal sequence repeat of 42 residues. The carboxy-terminal subdomain VAT-Nc forms a novel six-stranded beta-clam fold []. Together, VAT-Nn and VAT-Nc form a kidney-shaped structure, in close agreement with results from electron microscopy. VAT-Nn is related to numerous proteins including prokaryotic transcription factors, metabolic enzymes, the protease cofactors UFD1 and PrlF, and aspartic proteinases. ; GO: 0005524 ATP binding; PDB: 1CZ4_A 1CZ5_A 3CF3_C 3CF1_A 3CF2_A 1S3S_D 1E32_A 1R7R_A 2PJH_B 1CR5_B ....
Probab=99.40 E-value=1.5e-12 Score=111.58 Aligned_cols=81 Identities=35% Similarity=0.516 Sum_probs=67.1
Q ss_pred eEEEecccCC---CCcEEEECHhhHhhcCCCCCCeEEEeecCcceEEEEEEeCCCC--CCCeEEEcHHHHhhcCCCCCCe
Q 044198 11 RLIVEEALQD---DNSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDDDTC--DASKIRMNKVVRSNLRLRLGDL 85 (772)
Q Consensus 11 ~~~v~~~~~~---~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~r~~~~~~~~~~ 85 (772)
+|+|.++..+ ++++|+|||++|.+||+..||+|.|.|. ++ ++|.+|+.... +++.|+||..+|+|+++++||.
T Consensus 1 ~L~V~~~p~~~~~~~n~v~v~~~~m~~l~l~~gd~v~i~g~-~~-tv~~v~~~~~~~~~~g~I~l~~~~R~n~~v~igd~ 78 (87)
T PF02359_consen 1 RLRVAEAPSDEDAGTNCVRVSPEDMEELGLFPGDVVLISGK-RK-TVAFVFPDRPDDSPPGVIRLSGIQRKNAGVSIGDR 78 (87)
T ss_dssp EEEEEE-SSSHHHCTTEEEEEHHHHHCTTT-TTEEEEEETT-TE-EEEEEEEECCSTTCTTEEEE-HHHHHHCT--TTSE
T ss_pred CcEEEeCCChHhCCCCEEEEcHHHHHHcCCCCccEEEEeCC-ce-EEEEEEECCCCCCCCCEEEECHHHHhhCCcCCCCE
Confidence 6899999854 6999999999999999999999999994 44 88889877544 7899999999999999999999
Q ss_pred EEEEEccC
Q 044198 86 VSVKICND 93 (772)
Q Consensus 86 v~v~~~~~ 93 (772)
|+|+++.+
T Consensus 79 V~V~~~~~ 86 (87)
T PF02359_consen 79 VTVRPYDP 86 (87)
T ss_dssp EEEEEETT
T ss_pred EEEEECCC
Confidence 99999753
No 172
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.7e-11 Score=135.25 Aligned_cols=192 Identities=20% Similarity=0.271 Sum_probs=131.7
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccc----
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL---- 532 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l---- 532 (772)
...+|+++.|++.+.+.+...+.. + ..+.++|||||||+|||++|+++|+.+..+.......++
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 345789999999999888877653 1 235679999999999999999999987542111000000
Q ss_pred --hhcccccchHHHHHHHHHHHhC----CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEee
Q 044198 533 --LTMWFGESEANVRDVFDKARQS----APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGA 606 (772)
Q Consensus 533 --~~~~vg~se~~i~~vf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a 606 (772)
++..-......++.+++.+... .+.|+++||+|.+. ...++.|+..|+.. ....++|++
T Consensus 80 ~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-------------~~~~~~ll~~le~~--~~~~~~Il~ 144 (367)
T PRK14970 80 FELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-------------SAAFNAFLKTLEEP--PAHAIFILA 144 (367)
T ss_pred EEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-------------HHHHHHHHHHHhCC--CCceEEEEE
Confidence 0001112235677888766532 34699999999873 33467888888763 334566666
Q ss_pred cCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 044198 607 TNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRAC 679 (772)
Q Consensus 607 Tn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~ 679 (772)
|+.+..+.+++.+ |+. .+.|++|+.++...++...+++.++. ++..++.|++.+.| +.+.+.+.+....
T Consensus 145 ~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 145 TTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred eCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 7777888888887 775 78999999999999998888776653 45567777776654 5555555555444
No 173
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=2.1e-11 Score=135.98 Aligned_cols=222 Identities=21% Similarity=0.270 Sum_probs=138.3
Q ss_pred ccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhh-
Q 044198 187 GYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET-----GCYFLCINGPEIM- 260 (772)
Q Consensus 187 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l-----~~~~~~v~~~~~~- 260 (772)
..+.+.|-++++++|...+...+.. ..+.+++|+||||||||++++.+++.+ +..+++++|....
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 3356889999999998887542211 235679999999999999999999877 4668889885321
Q ss_pred ---------hhccc--------chHHHHHHHHHHHHH-cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccc
Q 044198 261 ---------SKMAG--------ESESNLREAFNVAEK-NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKS 322 (772)
Q Consensus 261 ---------~~~~g--------~~~~~l~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~ 322 (772)
....+ .....+..+.+.... ..+.+|+|||+|.+....+ ...+..|..+++...
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~~~- 170 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEEYP- 170 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhccC-
Confidence 11111 112233344443333 3467999999999972211 123455555554433
Q ss_pred cCceEEEEeeCCC---CCCChhhhccCCc-eeEEEeCCCCHHHHHHHHHHHhccC---CcccccchhHHHHHhcCCch--
Q 044198 323 RAHVMVIGATNRP---NSIDPALRRSGRF-DKEIDIGVPDEVGRLEVLRIHTKNM---KLAEDVNLETVARETHGFVG-- 393 (772)
Q Consensus 323 ~~~v~vI~atn~~---~~ld~al~r~gRf-~~~i~i~~p~~~~r~~Il~~~~~~~---~l~~~~~l~~la~~t~g~~~-- 393 (772)
..++.+|+++|.. +.+++.+++ || ...+.+++++.++..+|++.++... ...++..++.+++.+.+..|
T Consensus 171 ~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~ 248 (394)
T PRK00411 171 GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDA 248 (394)
T ss_pred CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcH
Confidence 2368888888876 356787776 55 3568999999999999999776431 11123345666766644322
Q ss_pred hhHHHHHHHHHHHhhhhhccccccccchhhHhhhhhhhccchhhhhhhhhc
Q 044198 394 ADLAALCTEGAMQCIREKMDLIDLEEDTIDAEVLSSMYVTNENLNAAVAIT 444 (772)
Q Consensus 394 ~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~ 444 (772)
+....+|..|+..+..+. ...++.+++..|+...
T Consensus 249 r~a~~ll~~a~~~a~~~~-----------------~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 249 RVAIDLLRRAGLIAEREG-----------------SRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHHHHHHcC-----------------CCCcCHHHHHHHHHHH
Confidence 233355555554443221 2246677777776655
No 174
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.39 E-value=1.1e-11 Score=124.16 Aligned_cols=191 Identities=23% Similarity=0.325 Sum_probs=129.5
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPE 258 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~ 258 (772)
.++.+.++++.|++.|++.|.+.....+.. .+..++||+|++|||||++++++..+. +..++.+...+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 356788999999999999998777553322 467889999999999999999999876 56677777655
Q ss_pred hhhhcccchHHHHHHHHHHHH-HcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc--ccCceEEEEeeCCC
Q 044198 259 IMSKMAGESESNLREAFNVAE-KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK--SRAHVMVIGATNRP 335 (772)
Q Consensus 259 ~~~~~~g~~~~~l~~~f~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~--~~~~v~vI~atn~~ 335 (772)
+. .+..++.... ...+.|||+||+.+=. . + .--..|..+++|-- ...||++.+|+|+.
T Consensus 91 L~---------~l~~l~~~l~~~~~kFIlf~DDLsFe~--~-----d---~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 91 LG---------DLPELLDLLRDRPYKFILFCDDLSFEE--G-----D---TEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred hc---------cHHHHHHHHhcCCCCEEEEecCCCCCC--C-----c---HHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 42 2334444444 2356799999986321 1 1 11256777777632 34689999999986
Q ss_pred CCCC---------------------hhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccc-cch----hHHHHHhc
Q 044198 336 NSID---------------------PALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAED-VNL----ETVARETH 389 (772)
Q Consensus 336 ~~ld---------------------~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~-~~l----~~la~~t~ 389 (772)
+.+. +.+.-..||...+.|..|+.++.++|++.+.....+.-+ ..+ ..+|....
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg 231 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRG 231 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC
Confidence 3222 222224599999999999999999999999865444322 122 23344445
Q ss_pred CCchhhHHHHH
Q 044198 390 GFVGADLAALC 400 (772)
Q Consensus 390 g~~~~dl~~l~ 400 (772)
|.+|+-..+.+
T Consensus 232 ~RSGRtA~QF~ 242 (249)
T PF05673_consen 232 GRSGRTARQFI 242 (249)
T ss_pred CCCHHHHHHHH
Confidence 55655444443
No 175
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.38 E-value=3.9e-12 Score=137.41 Aligned_cols=157 Identities=20% Similarity=0.260 Sum_probs=110.3
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcc
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 536 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~ 536 (772)
...+++++.|.+.+++.+...+.. + ..+..+||+||||+|||++|+++++..+.+++.+++++ ..
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~- 80 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR- 80 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-
Confidence 345678999999999988877642 1 12445667999999999999999999998999998876 21
Q ss_pred cccchHHHHHHHHHHH-hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCc
Q 044198 537 FGESEANVRDVFDKAR-QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDP 615 (772)
Q Consensus 537 vg~se~~i~~vf~~a~-~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~ 615 (772)
+......+........ ...+.++||||+|.+.. ....+.|...|+... .++.+|++||.++.+++
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~------------~~~~~~L~~~le~~~--~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL------------ADAQRHLRSFMEAYS--KNCSFIITANNKNGIIE 146 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC------------HHHHHHHHHHHHhcC--CCceEEEEcCChhhchH
Confidence 1111111222111111 13468999999998721 123344555566543 45678889999999999
Q ss_pred cccCCCCccccccCCCCCHHHHHHHHHHhh
Q 044198 616 ALLRPGRLDQLIYIPLPDEHSRLQIFKSCL 645 (772)
Q Consensus 616 allrpgRf~~~i~~~~p~~~~r~~Il~~~~ 645 (772)
++.+ ||. .+.|+.|+.+++.++++..+
T Consensus 147 ~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 147 PLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 9997 996 78999999999988876543
No 176
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=5e-12 Score=142.46 Aligned_cols=186 Identities=21% Similarity=0.306 Sum_probs=129.8
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc-------------
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN------------- 523 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~------------- 523 (772)
....|+++.|++.+.+.|...+.. -+.++.+|||||+|+|||++|+.+|..+.+.
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 345788999999999998877753 1234458899999999999999999987531
Q ss_pred -----------EEEEecccchhcccccchHHHHHHHHHHHh----CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHH
Q 044198 524 -----------FISIKGPELLTMWFGESEANVRDVFDKARQ----SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQL 588 (772)
Q Consensus 524 -----------~i~v~~~~l~~~~vg~se~~i~~vf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~l 588 (772)
++.++++. ...-..++.+.+.+.. ....|++|||+|.+. ....+.|
T Consensus 79 c~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt-------------~~a~naL 139 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT-------------KEAFNAL 139 (486)
T ss_pred HHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-------------HHHHHHH
Confidence 11222111 0112345666555443 334799999999882 3457889
Q ss_pred HHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCC
Q 044198 589 LTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFS 667 (772)
Q Consensus 589 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~s 667 (772)
|..|+.. ...+++|.+|+.++.+.+++.+ |+. .+.|++|+.++...+++..+++.++. ++..+..|++.+.| +
T Consensus 140 Lk~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~ 213 (486)
T PRK14953 140 LKTLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-G 213 (486)
T ss_pred HHHHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999864 3345666666778888888887 886 79999999999999999988877655 33446677776654 5
Q ss_pred HHHHHHHHHHHH
Q 044198 668 GADITEICQRAC 679 (772)
Q Consensus 668 g~di~~l~~~a~ 679 (772)
.+++.+++..+.
T Consensus 214 lr~al~~Ldkl~ 225 (486)
T PRK14953 214 MRDAASLLDQAS 225 (486)
T ss_pred HHHHHHHHHHHH
Confidence 566666665554
No 177
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=2e-11 Score=137.39 Aligned_cols=188 Identities=20% Similarity=0.282 Sum_probs=134.9
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCC---------------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQA--------------- 522 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~--------------- 522 (772)
..+|+++.|++.+++.|...+.. + ..+..+|||||+|+|||++|+++|+.+.+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 45789999999999999877643 1 23455799999999999999999988632
Q ss_pred ---------cEEEEecccchhcccccchHHHHHHHHHHHh----CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHH
Q 044198 523 ---------NFISIKGPELLTMWFGESEANVRDVFDKARQ----SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLL 589 (772)
Q Consensus 523 ---------~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL 589 (772)
.++.+++++- ..-..++++.+.... ....|++|||+|.+ +....+.||
T Consensus 78 ~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-------------t~~A~NALL 138 (535)
T PRK08451 78 QSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-------------TKEAFNALL 138 (535)
T ss_pred HHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-------------CHHHHHHHH
Confidence 1233332210 012456666654332 22369999999888 355788999
Q ss_pred HHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCH
Q 044198 590 TEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSG 668 (772)
Q Consensus 590 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 668 (772)
..|+..+ ..+.+|.+|+.+..|.+++.+ |+. +++|.+++.++..+.++..+++.++. .+..+..+++.+.| +.
T Consensus 139 K~LEEpp--~~t~FIL~ttd~~kL~~tI~S--Rc~-~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dl 212 (535)
T PRK08451 139 KTLEEPP--SYVKFILATTDPLKLPATILS--RTQ-HFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SL 212 (535)
T ss_pred HHHhhcC--CceEEEEEECChhhCchHHHh--hce-eEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 9999753 356666667778899999987 875 89999999999888888888766554 34557777877665 77
Q ss_pred HHHHHHHHHHHHHH
Q 044198 669 ADITEICQRACKCA 682 (772)
Q Consensus 669 ~di~~l~~~a~~~a 682 (772)
+++.+++..|...+
T Consensus 213 R~alnlLdqai~~~ 226 (535)
T PRK08451 213 RDTLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888877665443
No 178
>PRK08727 hypothetical protein; Validated
Probab=99.38 E-value=5.7e-12 Score=129.44 Aligned_cols=180 Identities=18% Similarity=0.229 Sum_probs=112.6
Q ss_pred CceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCC
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGS 573 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~ 573 (772)
..++|+||+|||||+|+++++..+ +...+.+...++. ..+...++..... .+|+|||++.+.....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l~~~--dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEALEGR--SLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHHhcC--CEEEEeCcccccCChH-
Confidence 449999999999999999998765 4455666655432 2334455554433 5999999998853321
Q ss_pred CCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCC---CccccCCCCc--cccccCCCCCHHHHHHHHHHhhccC
Q 044198 574 SVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMI---DPALLRPGRL--DQLIYIPLPDEHSRLQIFKSCLRKS 648 (772)
Q Consensus 574 ~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l---d~allrpgRf--~~~i~~~~p~~~~r~~Il~~~~~~~ 648 (772)
. ...++..++.....+.-+|+.+.+.|..+ ++++.+ || -..+.+++|+.+++.+|++.+....
T Consensus 111 -------~---~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 111 -------D---EVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred -------H---HHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 1 22334444433333333455555566655 688887 87 4688999999999999999877554
Q ss_pred CCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhh
Q 044198 649 PVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKY 720 (772)
Q Consensus 649 ~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~ 720 (772)
.+. ++..++.|++.+.| +.+.+.+++......+.... ..||...+++.+..
T Consensus 179 ~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~~--------------------~~it~~~~~~~l~~ 230 (233)
T PRK08727 179 GLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAAK--------------------RRVTVPFLRRVLEE 230 (233)
T ss_pred CCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhC--------------------CCCCHHHHHHHHhh
Confidence 443 34456777876653 33344344554332222210 15788887777754
No 179
>PRK05642 DNA replication initiation factor; Validated
Probab=99.37 E-value=7.6e-12 Score=128.56 Aligned_cols=180 Identities=16% Similarity=0.227 Sum_probs=122.1
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccC
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRG 572 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~ 572 (772)
...++|+||+|||||+|++++++++ +...++++..++... ...+.+..+.. .+|+|||++.+.++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~~--d~LiiDDi~~~~~~-- 112 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQY--ELVCLDDLDVIAGK-- 112 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhhC--CEEEEechhhhcCC--
Confidence 3568999999999999999999764 567788888876542 12333333333 58999999988433
Q ss_pred CCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCC---CccccCCCCcc--ccccCCCCCHHHHHHHHHHhhcc
Q 044198 573 SSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMI---DPALLRPGRLD--QLIYIPLPDEHSRLQIFKSCLRK 647 (772)
Q Consensus 573 ~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l---d~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~~~ 647 (772)
.....+|+..++.....++.++++++..|..+ .|.+.+ ||. ..+.+.+|+.++|.+|++.....
T Consensus 113 ---------~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 113 ---------ADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred ---------hHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 12234566666666556677888887776544 577876 885 67778999999999999966655
Q ss_pred CCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHh
Q 044198 648 SPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMK 719 (772)
Q Consensus 648 ~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~ 719 (772)
..+. ++.-++.|++...+ +.+.+.+++......++... .+||..-++++|.
T Consensus 182 ~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~~--------------------~~it~~~~~~~L~ 233 (234)
T PRK05642 182 RGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQAQ--------------------RKLTIPFLKETLG 233 (234)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcC--------------------CcCCHHHHHHHhc
Confidence 4443 34446677776654 77777777765543333221 2578777777664
No 180
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.7e-11 Score=135.28 Aligned_cols=187 Identities=19% Similarity=0.243 Sum_probs=126.7
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY----------- 250 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~----------- 250 (772)
++.+-+|+++.|.+..+..|+.++... ..+..+||+||+||||||+|+.+|+.+++.
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 446678999999999999998887642 124469999999999999999999988652
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHH----HHcCCceEEeccccccccCCCCCchhhHHHHHHHH
Q 044198 251 -------------FLCINGPEIMSKMAGESESNLREAFNVA----EKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQL 313 (772)
Q Consensus 251 -------------~~~v~~~~~~~~~~g~~~~~l~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 313 (772)
++.+++.. ......++.+.+.+ ......|+||||+|.+.. ...+.|
T Consensus 79 ~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-----------~A~NAL 141 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-----------QSFNAL 141 (484)
T ss_pred cHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------HHHHHH
Confidence 22222211 01122344443332 233456999999998842 235677
Q ss_pred HHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCc
Q 044198 314 LTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFV 392 (772)
Q Consensus 314 ~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 392 (772)
+..++. ....+++|.+|+.++.|.+++++ |+.. +.|..++..+..+.++..+....+. ++..+..+++...|-
T Consensus 142 LKtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq~-~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd- 215 (484)
T PRK14956 142 LKTLEE--PPAHIVFILATTEFHKIPETILS--RCQD-FIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGS- 215 (484)
T ss_pred HHHhhc--CCCceEEEeecCChhhccHHHHh--hhhe-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCh-
Confidence 777765 34578888999999999999998 7754 7888888888777777665543322 233467777777665
Q ss_pred hhhHHHHHHHH
Q 044198 393 GADLAALCTEG 403 (772)
Q Consensus 393 ~~dl~~l~~~a 403 (772)
.+|...++..+
T Consensus 216 ~RdAL~lLeq~ 226 (484)
T PRK14956 216 VRDMLSFMEQA 226 (484)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 181
>PRK04195 replication factor C large subunit; Provisional
Probab=99.36 E-value=1.6e-11 Score=139.76 Aligned_cols=188 Identities=28% Similarity=0.387 Sum_probs=128.9
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
+..+-+++++.|.+++++.|+.++..-.. | .+++++||+||||||||++|+++|++++..++.+++++...
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 45667889999999999999999864221 1 23678999999999999999999999999999999876432
Q ss_pred hcccchHHHHHHHHHHHHH------cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCC
Q 044198 262 KMAGESESNLREAFNVAEK------NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP 335 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~ 335 (772)
...++.+...+.. ..+.+|+|||+|.+..+.. ......|+.+++. .+..+|.++|.+
T Consensus 78 ------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-------~~~~~aL~~~l~~----~~~~iIli~n~~ 140 (482)
T PRK04195 78 ------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-------RGGARAILELIKK----AKQPIILTANDP 140 (482)
T ss_pred ------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-------hhHHHHHHHHHHc----CCCCEEEeccCc
Confidence 1223333332221 2467999999999865321 1224556666652 234456678888
Q ss_pred CCCCh-hhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCchhhHHHHHHH
Q 044198 336 NSIDP-ALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVGADLAALCTE 402 (772)
Q Consensus 336 ~~ld~-al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~ 402 (772)
..+.+ .+++ | ...+.|+.|+..+...+++..+....+. ++..++.++..+.| |+..++..
T Consensus 141 ~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~ 202 (482)
T PRK04195 141 YDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAIND 202 (482)
T ss_pred cccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHH
Confidence 77777 6664 3 3569999999999999998776543322 23346777776644 66555543
No 182
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=1.4e-11 Score=135.02 Aligned_cols=190 Identities=19% Similarity=0.329 Sum_probs=125.3
Q ss_pred ccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEE--------------
Q 044198 187 GYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFL-------------- 252 (772)
Q Consensus 187 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~-------------- 252 (772)
.|++|+|+++.++.|+.++..+..+. ..++...++.+||+||||+|||++|+++|+.+.+..-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 47889999999999999998754322 2233345678999999999999999999998754210
Q ss_pred -EEechhhh--h-hcccchHHHHHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccC
Q 044198 253 -CINGPEIM--S-KMAGESESNLREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRA 324 (772)
Q Consensus 253 -~v~~~~~~--~-~~~g~~~~~l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~ 324 (772)
.-+.+++. . ....-....++.+++.+.. ....|+||||+|.+.+. ..+.|+..++... .
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-----------aanaLLk~LEep~--~ 146 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-----------AANALLKAVEEPP--P 146 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-----------HHHHHHHHhhcCC--C
Confidence 00001110 0 0001123456777766543 23459999999988532 2466888887543 3
Q ss_pred ceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHH
Q 044198 325 HVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAAL 399 (772)
Q Consensus 325 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l 399 (772)
++++|.+|+.++.+.|++++ |+ ..+.|+.|+.++..+.|.... .+. ......++..++|..+..+..+
T Consensus 147 ~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 147 RTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred CCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHHh
Confidence 34455555558899999998 77 469999999999887776322 222 2345677888888887665443
No 183
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.35 E-value=1.2e-11 Score=138.01 Aligned_cols=169 Identities=30% Similarity=0.457 Sum_probs=117.6
Q ss_pred CCCCccccccCcHHHHHH---HHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 044198 183 LDDVGYEDVGGVRKQLGQ---IREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEI 259 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~---i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~ 259 (772)
..+-+++++.|.++.+.. |++++.. ....+++|+|||||||||+|+++++.++..++.+++...
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 455678899999988766 7777653 124479999999999999999999999999999887532
Q ss_pred hhhcccchHHHHHHHHHHHH----HcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEee--C
Q 044198 260 MSKMAGESESNLREAFNVAE----KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGAT--N 333 (772)
Q Consensus 260 ~~~~~g~~~~~l~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~at--n 333 (772)
....++.+++.+. .....+|||||+|.+.. ...+.|+..++. ..+++|++| |
T Consensus 73 -------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~-----------~~q~~LL~~le~----~~iilI~att~n 130 (413)
T PRK13342 73 -------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK-----------AQQDALLPHVED----GTITLIGATTEN 130 (413)
T ss_pred -------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH-----------HHHHHHHHHhhc----CcEEEEEeCCCC
Confidence 2234455555443 23567999999998742 123455565543 456777665 3
Q ss_pred CCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccC-----CcccccchhHHHHHhcC
Q 044198 334 RPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNM-----KLAEDVNLETVARETHG 390 (772)
Q Consensus 334 ~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~-----~l~~~~~l~~la~~t~g 390 (772)
+...+++++++ |+ ..+.+..++.++...+++..+... .+. +..++.+++.+.|
T Consensus 131 ~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~G 188 (413)
T PRK13342 131 PSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLANG 188 (413)
T ss_pred hhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCCC
Confidence 34578999998 77 568999999999999888765431 222 2235566666544
No 184
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=2e-11 Score=135.42 Aligned_cols=187 Identities=19% Similarity=0.246 Sum_probs=127.8
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc-------------
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN------------- 523 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~------------- 523 (772)
...+|++|.|++.+++.|...+.. + +.+..+||+||||+|||++|+++|+.+.+.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 345789999999999988876653 1 235569999999999999999999988652
Q ss_pred -------------------EEEEecccchhcccccchHHHHHHHHHHHh----CCCeEEEEcCchhhhhccCCCCCCCCc
Q 044198 524 -------------------FISIKGPELLTMWFGESEANVRDVFDKARQ----SAPCVLFFDELDSIAIQRGSSVGDGGG 580 (772)
Q Consensus 524 -------------------~i~v~~~~l~~~~vg~se~~i~~vf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~ 580 (772)
++.+++.+. ..-..++++.+.+.. ....|+||||+|.+.
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~------------ 140 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS------------ 140 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC------------
Confidence 222222110 113456665555422 233699999999883
Q ss_pred hhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHH
Q 044198 581 VDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAI 659 (772)
Q Consensus 581 ~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~l 659 (772)
....+.||..|+... ...++|++|+.+..+-+++.+ |+. .+.|++++.++..+.++..+++.... ++..++.|
T Consensus 141 -~~~~~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l 214 (397)
T PRK14955 141 -IAAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLI 214 (397)
T ss_pred -HHHHHHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 334677888888543 355555666667777788876 886 89999999999888888887665543 34456777
Q ss_pred HHHcCCCCHHHHHHHHHHHHH
Q 044198 660 AKYTHGFSGADITEICQRACK 680 (772)
Q Consensus 660 a~~~~g~sg~di~~l~~~a~~ 680 (772)
++.+.| +.+.+.+.+..+..
T Consensus 215 ~~~s~g-~lr~a~~~L~kl~~ 234 (397)
T PRK14955 215 GRKAQG-SMRDAQSILDQVIA 234 (397)
T ss_pred HHHcCC-CHHHHHHHHHHHHH
Confidence 777654 55566565555443
No 185
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.34 E-value=2.2e-11 Score=131.78 Aligned_cols=182 Identities=21% Similarity=0.253 Sum_probs=121.5
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhC-----CcEEEEecccc
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKGPEL 532 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~-----~~~i~v~~~~l 532 (772)
+.+|+++.|.+++.+.+...+.. ....+++|+||||||||++++++++.+. .+++.++.++.
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~-------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKE-------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 35788999999999888877643 1123589999999999999999999863 34555554432
Q ss_pred hhcccccchHHHHHHHH-HHHh-----CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEee
Q 044198 533 LTMWFGESEANVRDVFD-KARQ-----SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGA 606 (772)
Q Consensus 533 ~~~~vg~se~~i~~vf~-~a~~-----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a 606 (772)
.+ ...++..+. .++. ..+.+++|||+|.+. ....+.|+..++.... ...+|.+
T Consensus 80 ~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~-------------~~~~~~L~~~le~~~~--~~~lIl~ 138 (319)
T PRK00440 80 RG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT-------------SDAQQALRRTMEMYSQ--NTRFILS 138 (319)
T ss_pred cc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC-------------HHHHHHHHHHHhcCCC--CCeEEEE
Confidence 11 112222222 2221 234699999999883 2235567777776543 3455666
Q ss_pred cCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHH
Q 044198 607 TNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQR 677 (772)
Q Consensus 607 Tn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~ 677 (772)
+|.+..+.+++.+ |+. .+.|++++.++...+++..+++.++. .+..++.+++.+.| +.+.+.+.++.
T Consensus 139 ~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~ 206 (319)
T PRK00440 139 CNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQA 206 (319)
T ss_pred eCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 7777777777776 876 68999999999999999988776654 44557777776654 33444444443
No 186
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.34 E-value=2.3e-11 Score=139.00 Aligned_cols=181 Identities=23% Similarity=0.310 Sum_probs=118.0
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEEech
Q 044198 188 YEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET----------GCYFLCINGP 257 (772)
Q Consensus 188 ~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l----------~~~~~~v~~~ 257 (772)
-+.|.|-++++++|..++.-.+.. -.+...++|+|+||||||++++.+.+++ ...++++||.
T Consensus 754 PD~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 357889999999998888653321 1222335699999999999999998766 1457899995
Q ss_pred hhhhh----------c-------ccchHHHHHHHHHHHHH--cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhh
Q 044198 258 EIMSK----------M-------AGESESNLREAFNVAEK--NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMD 318 (772)
Q Consensus 258 ~~~~~----------~-------~g~~~~~l~~~f~~a~~--~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld 318 (772)
.+... . .......+..+|..... ....||+|||||.|.... + ..|+.+++
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~--------Q---DVLYnLFR 894 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT--------Q---KVLFTLFD 894 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH--------H---HHHHHHHH
Confidence 43211 0 01123455666665432 235699999999997532 1 22444443
Q ss_pred cc-cccCceEEEEeeCC---CCCCChhhhccCCcee-EEEeCCCCHHHHHHHHHHHhccCC-cccccchhHHHHHhc
Q 044198 319 GM-KSRAHVMVIGATNR---PNSIDPALRRSGRFDK-EIDIGVPDEVGRLEVLRIHTKNMK-LAEDVNLETVARETH 389 (772)
Q Consensus 319 ~~-~~~~~v~vI~atn~---~~~ld~al~r~gRf~~-~i~i~~p~~~~r~~Il~~~~~~~~-l~~~~~l~~la~~t~ 389 (772)
.. .....+++||++|. ++.++|.+++ ||.. ++.|++++.+++.+||+..+.... ..++..++.+|+...
T Consensus 895 ~~~~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 895 WPTKINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA 969 (1164)
T ss_pred HhhccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Confidence 22 13456899999986 4567888887 6643 488899999999999998776431 122223555665443
No 187
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=3.6e-11 Score=138.33 Aligned_cols=190 Identities=18% Similarity=0.253 Sum_probs=127.8
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEE-----------E
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFI-----------S 526 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i-----------~ 526 (772)
..+|+++.|++.+++.|+..+.. + +.+.++||+||+|||||++|+++|+.+.+.-. .
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~-----------~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM-----------D-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 34689999999999998876543 1 33556999999999999999999999865210 0
Q ss_pred -----------Eec--ccchhcccccc---hHHHHHHHHHHH----hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHH
Q 044198 527 -----------IKG--PELLTMWFGES---EANVRDVFDKAR----QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVN 586 (772)
Q Consensus 527 -----------v~~--~~l~~~~vg~s---e~~i~~vf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~ 586 (772)
..+ .++ ..+-|.+ -..|+++.+.+. .....|++|||+|.+. ....+
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~-~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt-------------~~a~n 145 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNI-SEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS-------------TAAFN 145 (620)
T ss_pred CCccCHHHHHHhccCCCCe-EEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-------------HHHHH
Confidence 000 010 0011211 345666555442 2334699999999883 33578
Q ss_pred HHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCC
Q 044198 587 QLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHG 665 (772)
Q Consensus 587 ~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g 665 (772)
.||..|+... ...++|++|+.++.|-+.+.+ |+. .+.|.+++.++....++..+++.++. ++..++.|++.+.|
T Consensus 146 aLLK~LEePp--~~tv~IL~t~~~~kLl~TI~S--Rc~-~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G 220 (620)
T PRK14954 146 AFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG 220 (620)
T ss_pred HHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--hce-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 8999999643 345556666667888888887 885 89999999999888888877665543 44557778877765
Q ss_pred CCHHHHHHHHHHHH
Q 044198 666 FSGADITEICQRAC 679 (772)
Q Consensus 666 ~sg~di~~l~~~a~ 679 (772)
+.+++.+.+....
T Consensus 221 -dlr~al~eLeKL~ 233 (620)
T PRK14954 221 -SMRDAQSILDQVI 233 (620)
T ss_pred -CHHHHHHHHHHHH
Confidence 5555555544433
No 188
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=3e-11 Score=137.94 Aligned_cols=186 Identities=18% Similarity=0.266 Sum_probs=127.5
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY----------- 250 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~----------- 250 (772)
++.+-+|++|.|.++.++.|+.++... ..++.+||+||+||||||+++.+++.+++.
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 456678999999999999999887641 224568999999999999999999988652
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHHH----HcCCceEEeccccccccCCCCCchhhHHHHHHHH
Q 044198 251 -------------FLCINGPEIMSKMAGESESNLREAFNVAE----KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQL 313 (772)
Q Consensus 251 -------------~~~v~~~~~~~~~~g~~~~~l~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 313 (772)
++.++..+ ......++.+++.+. .....|+||||+|.|.. ...+.|
T Consensus 77 ~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NAL 139 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNAM 139 (830)
T ss_pred HHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHHH
Confidence 22222211 111234555555433 23346999999998842 234667
Q ss_pred HHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCc
Q 044198 314 LTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFV 392 (772)
Q Consensus 314 ~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 392 (772)
+..|+.. ..++.+|.+||.++.|.+.+++ |+. .+.|..++.++..+.|+..+....+. ++..+..+++...|-.
T Consensus 140 LKtLEEP--P~~v~FILaTtd~~KIp~TIrS--RCq-~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gsm 214 (830)
T PRK07003 140 LKTLEEP--PPHVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSM 214 (830)
T ss_pred HHHHHhc--CCCeEEEEEECChhhccchhhh--heE-EEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 7777754 3468888899999999999998 774 58899999999888888766443322 2334677777777754
Q ss_pred hhhHHHHHHH
Q 044198 393 GADLAALCTE 402 (772)
Q Consensus 393 ~~dl~~l~~~ 402 (772)
++...++.+
T Consensus 215 -RdALsLLdQ 223 (830)
T PRK07003 215 -RDALSLTDQ 223 (830)
T ss_pred -HHHHHHHHH
Confidence 343444433
No 189
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=1.6e-11 Score=138.52 Aligned_cols=186 Identities=17% Similarity=0.266 Sum_probs=126.1
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY----------- 250 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~----------- 250 (772)
++.+-+|++|.|.+..++.|+.++... ..++.+||+||+|+||||+++.+|+.+++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 346678999999999999999888742 224568999999999999999999998751
Q ss_pred ------------------EEEEechhhhhhcccchHHHHHHHHHHHH----HcCCceEEeccccccccCCCCCchhhHHH
Q 044198 251 ------------------FLCINGPEIMSKMAGESESNLREAFNVAE----KNAPSIIFIDEIDSIAPKREKTHGEVEKR 308 (772)
Q Consensus 251 ------------------~~~v~~~~~~~~~~g~~~~~l~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~ 308 (772)
++.+++.+ ......++.+.+... .....|+||||+|.+.. .
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~-----------~ 139 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-----------H 139 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------H
Confidence 12222110 112234455544432 33456999999998842 2
Q ss_pred HHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCccc-ccchhHHHHH
Q 044198 309 IVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAE-DVNLETVARE 387 (772)
Q Consensus 309 v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~-~~~l~~la~~ 387 (772)
..+.|+..|+.- ..++.+|.+||.++.|.+.+++ |+ ..+.|..++.++..+.|+..+....+.. +..+..+++.
T Consensus 140 AaNALLKTLEEP--P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 140 AFNAMLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA 214 (700)
T ss_pred HHHHHHHhhccC--CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 346777777753 3467888899999999999998 76 4488999999888888776654332221 2235666766
Q ss_pred hcCCchhhHHHHHHH
Q 044198 388 THGFVGADLAALCTE 402 (772)
Q Consensus 388 t~g~~~~dl~~l~~~ 402 (772)
+.|-. ++...++.+
T Consensus 215 A~Gs~-RdALsLLdQ 228 (700)
T PRK12323 215 AQGSM-RDALSLTDQ 228 (700)
T ss_pred cCCCH-HHHHHHHHH
Confidence 66544 344444444
No 190
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=3.1e-11 Score=135.47 Aligned_cols=174 Identities=18% Similarity=0.297 Sum_probs=119.5
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC------------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGC------------ 249 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~------------ 249 (772)
+..+-+|+++.|.+..++.|+.++... ..+.++||+|||||||||+|+++|+.+++
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 346678999999999988888777642 23456999999999999999999998864
Q ss_pred ------------eEEEEechhhhhhcccchHHHHHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHH
Q 044198 250 ------------YFLCINGPEIMSKMAGESESNLREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQL 313 (772)
Q Consensus 250 ------------~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 313 (772)
.++.+++.. ......++.+.+.+.. ....++||||+|.+.. ...+.|
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-----------~a~~~L 137 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-----------EAFNAL 137 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------HHHHHH
Confidence 233443321 1112344554444332 2345999999998842 223556
Q ss_pred HHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhcc--CCcccccchhHHHHHhcC
Q 044198 314 LTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKN--MKLAEDVNLETVARETHG 390 (772)
Q Consensus 314 ~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~--~~l~~~~~l~~la~~t~g 390 (772)
+..++.. ...+++|++|+.+..+++++++ |+. .+++..++.++...+++..... ..+.+ ..+..++..+.|
T Consensus 138 Lk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~-eal~~Ia~~s~G 210 (472)
T PRK14962 138 LKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDR-EALSFIAKRASG 210 (472)
T ss_pred HHHHHhC--CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhCC
Confidence 6666643 2457777777777889999998 775 6999999999998888876543 33333 246677776654
No 191
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.33 E-value=7.5e-12 Score=133.81 Aligned_cols=160 Identities=21% Similarity=0.334 Sum_probs=105.3
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh-------CC--cEEEEe
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC-------QA--NFISIK 528 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~-------~~--~~i~v~ 528 (772)
...|++|.|++.+++.+.-.... ....|+||+|+||||||++|+++|..+ +. ++..+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 45789999999999887643321 123679999999999999999999988 32 222211
Q ss_pred cc---------cchh---------------cccccc--hHHH---HHHHHHH--HhCCCeEEEEcCchhhhhccCCCCCC
Q 044198 529 GP---------ELLT---------------MWFGES--EANV---RDVFDKA--RQSAPCVLFFDELDSIAIQRGSSVGD 577 (772)
Q Consensus 529 ~~---------~l~~---------------~~vg~s--e~~i---~~vf~~a--~~~~p~ilfiDEid~l~~~r~~~~~~ 577 (772)
+. ++.. ..+|.. ++.+ ...|+.- ......+||+||++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl---------- 140 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL---------- 140 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC----------
Confidence 10 1100 022210 0000 0012110 0011149999999988
Q ss_pred CCchhHHHHHHHHHhcCCC-----------CCCcEEEEeecCCCC-CCCccccCCCCccccccCCCCCH-HHHHHHHHHh
Q 044198 578 GGGVDRIVNQLLTEMDGLS-----------AKKTVFVIGATNRPD-MIDPALLRPGRLDQLIYIPLPDE-HSRLQIFKSC 644 (772)
Q Consensus 578 ~~~~~~~~~~lL~~ld~~~-----------~~~~v~vi~aTn~~~-~ld~allrpgRf~~~i~~~~p~~-~~r~~Il~~~ 644 (772)
...+++.|+..|+... ...++++++|+|..+ .+.++++. ||...+.+++|.. ++|.+|++..
T Consensus 141 ---~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 141 ---EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred ---CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 3667888999886432 235789999999755 58889998 9999999998866 8999999875
Q ss_pred h
Q 044198 645 L 645 (772)
Q Consensus 645 ~ 645 (772)
.
T Consensus 216 ~ 216 (334)
T PRK13407 216 D 216 (334)
T ss_pred h
Confidence 4
No 192
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.33 E-value=9.6e-12 Score=133.86 Aligned_cols=176 Identities=28% Similarity=0.454 Sum_probs=123.5
Q ss_pred cccCcHHHHHHHHHHHHcccCChhHHHHhC-CCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hccc-c
Q 044198 190 DVGGVRKQLGQIREVVELPLRHPQIFKALG-VKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS-KMAG-E 266 (772)
Q Consensus 190 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~-~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~-~~~g-~ 266 (772)
.|.|++++++.+..++...++...+...+. -.+++++||+||||||||++++++|+.++.+|+.+++..+.. .|.| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 388999999999777765333222111111 124689999999999999999999999999999999876653 4555 4
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q 044198 267 SESNLREAFNVA-------------------------------------------------------------------- 278 (772)
Q Consensus 267 ~~~~l~~~f~~a-------------------------------------------------------------------- 278 (772)
.+..++.+|..+
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 555555554443
Q ss_pred -----------------------------------------------------------------------HHcCCceEE
Q 044198 279 -----------------------------------------------------------------------EKNAPSIIF 287 (772)
Q Consensus 279 -----------------------------------------------------------------------~~~~p~il~ 287 (772)
...+..|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 012346999
Q ss_pred eccccccccCCCCCchhh-HHHHHHHHHHHhhccc--------ccCceEEEEee----CCCCCCChhhhccCCceeEEEe
Q 044198 288 IDEIDSIAPKREKTHGEV-EKRIVSQLLTLMDGMK--------SRAHVMVIGAT----NRPNSIDPALRRSGRFDKEIDI 354 (772)
Q Consensus 288 iDEid~l~~~~~~~~~~~-~~~v~~~L~~lld~~~--------~~~~v~vI~at----n~~~~ld~al~r~gRf~~~i~i 354 (772)
|||||.++.+......++ ..-+...|+.+++|-. ...++++|++- ..|++|=|.|. |||...+.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEEC
Confidence 999999997653222222 2347778999998733 22467777653 23556667776 599999999
Q ss_pred CCCCHHHHHHHHH
Q 044198 355 GVPDEVGRLEVLR 367 (772)
Q Consensus 355 ~~p~~~~r~~Il~ 367 (772)
..++.++...||.
T Consensus 331 ~~L~~edL~rILt 343 (441)
T TIGR00390 331 QALTTDDFERILT 343 (441)
T ss_pred CCCCHHHHHHHhc
Confidence 9999999999984
No 193
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.32 E-value=1.5e-11 Score=140.78 Aligned_cols=198 Identities=21% Similarity=0.358 Sum_probs=125.4
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeE
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET----------GCYF 251 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l----------~~~~ 251 (772)
+..+.+|+++.|.+..++.++..+.. ..+.++||+||||||||++|++++... +.+|
T Consensus 58 ~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 58 KTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred hhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 34567889999999999998865432 235689999999999999999998653 3578
Q ss_pred EEEechhhh--h-----hcccchHHHH---HHHHH----------HHHHcCCceEEeccccccccCCCCCchhhHHHHHH
Q 044198 252 LCINGPEIM--S-----KMAGESESNL---REAFN----------VAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVS 311 (772)
Q Consensus 252 ~~v~~~~~~--~-----~~~g~~~~~l---~~~f~----------~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 311 (772)
+.++|.... . ...+.....+ ...|. ........+|||||++.+.+. ..+
T Consensus 125 i~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~-----------~q~ 193 (531)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV-----------QMN 193 (531)
T ss_pred EEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH-----------HHH
Confidence 888875311 0 0000000000 00000 011223469999999988542 234
Q ss_pred HHHHHhhccc--------------------------ccCceE-EEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHH
Q 044198 312 QLLTLMDGMK--------------------------SRAHVM-VIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLE 364 (772)
Q Consensus 312 ~L~~lld~~~--------------------------~~~~v~-vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~ 364 (772)
.|+..++... ...++. +++|++.++.++|++++ |+. ++.++.++.++..+
T Consensus 194 ~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~ 270 (531)
T TIGR02902 194 KLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKE 270 (531)
T ss_pred HHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHH
Confidence 4444443210 012334 44556778999999998 875 58899999999999
Q ss_pred HHHHHhccCCcc-cccchhHHHHHhcCCchhhHHHHHHHHHHHhh
Q 044198 365 VLRIHTKNMKLA-EDVNLETVARETHGFVGADLAALCTEGAMQCI 408 (772)
Q Consensus 365 Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~ 408 (772)
|++..++...+. ++..++.++..+ +.++++..+++.|+..+.
T Consensus 271 Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~ 313 (531)
T TIGR02902 271 IAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIAL 313 (531)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHh
Confidence 999887654432 222355555443 367889898888876554
No 194
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.5e-11 Score=131.80 Aligned_cols=179 Identities=25% Similarity=0.358 Sum_probs=122.0
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhCCc-----EEEEecccchhcc---------------cccch-HHHHHHHHHHHh
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQAN-----FISIKGPELLTMW---------------FGESE-ANVRDVFDKARQ 553 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~~~-----~i~v~~~~l~~~~---------------vg~se-~~i~~vf~~a~~ 553 (772)
.|.++++|||||||||.+++.++.++.-. +++||+..+-+.| .|.+. +....+++....
T Consensus 41 ~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~ 120 (366)
T COG1474 41 RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSK 120 (366)
T ss_pred CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHh
Confidence 34569999999999999999999988543 7899987664332 12221 222333333333
Q ss_pred -CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCC---CCCccccCCCCcc-cccc
Q 044198 554 -SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPD---MIDPALLRPGRLD-QLIY 628 (772)
Q Consensus 554 -~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld~allrpgRf~-~~i~ 628 (772)
...-|+++||+|.|..+.+ .++..|+...+.. ..++.+|+.+|..+ .+||.+.+ ||. ..|.
T Consensus 121 ~~~~~IvvLDEid~L~~~~~----------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~ 186 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG----------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIV 186 (366)
T ss_pred cCCeEEEEEcchhhhccccc----------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceee
Confidence 3457899999999975421 5666777766654 56789999999864 78888876 654 5699
Q ss_pred CCCCCHHHHHHHHHHhhccCCCC---CcccHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHHHH
Q 044198 629 IPLPDEHSRLQIFKSCLRKSPVS---KDIDLKAIAKYTHGFS--GADITEICQRACKCAIREEI 687 (772)
Q Consensus 629 ~~~p~~~~r~~Il~~~~~~~~~~---~~~~~~~la~~~~g~s--g~di~~l~~~a~~~a~~~~~ 687 (772)
||+++.+|...|++...+...-. ++.-++.+|+.+...+ .+---.+|+.|+..|.++..
T Consensus 187 F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~ 250 (366)
T COG1474 187 FPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGS 250 (366)
T ss_pred eCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999888653222 2223444444443333 33333489999999887654
No 195
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.32 E-value=2.9e-11 Score=143.45 Aligned_cols=162 Identities=24% Similarity=0.344 Sum_probs=118.2
Q ss_pred cccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh---------
Q 044198 190 DVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIM--------- 260 (772)
Q Consensus 190 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~--------- 260 (772)
++.|+++.++.|.+++...... +-.....++|+||||||||++++.+|+.++.+++.++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 5889999999998887753211 112345699999999999999999999999999887654321
Q ss_pred hhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc-------------ccCceE
Q 044198 261 SKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK-------------SRAHVM 327 (772)
Q Consensus 261 ~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~-------------~~~~v~ 327 (772)
..|.|.....+...+..+....| +++|||+|.+.+..... ..+.|+..+|..+ ...+++
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~-------~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD-------PASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC-------HHHHHHHHhccccEEEEecccccccccCCceE
Confidence 12445555555555555443344 89999999987653211 2356777776421 226799
Q ss_pred EEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHh
Q 044198 328 VIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHT 370 (772)
Q Consensus 328 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~ 370 (772)
+|+|+|.. .|+++|++ ||. .|.+..++.++..+|.+.++
T Consensus 468 ~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhh
Confidence 99999887 59999998 995 58999999999999998776
No 196
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.32 E-value=4.2e-12 Score=128.89 Aligned_cols=171 Identities=19% Similarity=0.325 Sum_probs=114.6
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh-----CCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhc
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQ 570 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~-----~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~ 570 (772)
...++||||+|+|||+|.++++++. +..++++++.++...+.......--.-|..... ...+|+||+++.+.++
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR-SADLLIIDDIQFLAGK 112 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh-cCCEEEEecchhhcCc
Confidence 3458999999999999999999874 567889999888766543322211122333323 3369999999998532
Q ss_pred cCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCC---ccccCCCCcc--ccccCCCCCHHHHHHHHHHhh
Q 044198 571 RGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMID---PALLRPGRLD--QLIYIPLPDEHSRLQIFKSCL 645 (772)
Q Consensus 571 r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld---~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~ 645 (772)
.+....|+..++.+...++.+|+++...|..+. +.+.+ ||. ..+.+.+||.++|.+|++..+
T Consensus 113 -----------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 113 -----------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKA 179 (219)
T ss_dssp -----------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHH
Confidence 445666777777665666777888877787654 55655 887 588889999999999999999
Q ss_pred ccCCCCCccc-HHHHHHHcCCCCHHHHHHHHHHHHHH
Q 044198 646 RKSPVSKDID-LKAIAKYTHGFSGADITEICQRACKC 681 (772)
Q Consensus 646 ~~~~~~~~~~-~~~la~~~~g~sg~di~~l~~~a~~~ 681 (772)
...++.-+.+ ++.|++... -+.++|..++......
T Consensus 180 ~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 180 KERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAY 215 (219)
T ss_dssp HHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHH
Confidence 8877764444 556666554 4778888887766544
No 197
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.32 E-value=4.5e-11 Score=123.15 Aligned_cols=128 Identities=22% Similarity=0.211 Sum_probs=87.1
Q ss_pred CeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCC------------CCCCCccccCCCCc
Q 044198 556 PCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNR------------PDMIDPALLRPGRL 623 (772)
Q Consensus 556 p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~------------~~~ld~allrpgRf 623 (772)
|.||||||++.|= -..++-|-..|+.- --=++|+|||+ |.-|+..|+. |+
T Consensus 292 pGVLFIDEvHmLD-------------IE~FsFlnrAlEse---~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl 353 (450)
T COG1224 292 PGVLFIDEVHMLD-------------IECFSFLNRALESE---LAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL 353 (450)
T ss_pred cceEEEechhhhh-------------HHHHHHHHHHhhcc---cCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--he
Confidence 6788888888771 22333333444421 11278889996 5566666665 66
Q ss_pred cccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCc
Q 044198 624 DQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGA 702 (772)
Q Consensus 624 ~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 702 (772)
.+|...+++.++.++|++...+...+. ++..++.|+..-..-|-+---+|+.-|...|.++..
T Consensus 354 -lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~--------------- 417 (450)
T COG1224 354 -LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGS--------------- 417 (450)
T ss_pred -eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCC---------------
Confidence 378888999999999999999876665 445577777766555655556666666666666542
Q ss_pred ccccccccHHHHHHHHhhC
Q 044198 703 AGEVAEIKKEHFEESMKYA 721 (772)
Q Consensus 703 ~~~~~~i~~~~~~~al~~~ 721 (772)
..|..+|+++|-.-+
T Consensus 418 ----~~V~~~dVe~a~~lF 432 (450)
T COG1224 418 ----KRVEVEDVERAKELF 432 (450)
T ss_pred ----CeeehhHHHHHHHHH
Confidence 258999999987765
No 198
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.32 E-value=5e-11 Score=131.29 Aligned_cols=175 Identities=26% Similarity=0.335 Sum_probs=115.5
Q ss_pred ccCcHHHHHHHHHHHHcccCChhHHHH--hCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hcccc
Q 044198 191 VGGVRKQLGQIREVVELPLRHPQIFKA--LGV-KPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS-KMAGE 266 (772)
Q Consensus 191 i~G~~~~~~~i~~~i~~~l~~~~~~~~--~~~-~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~-~~~g~ 266 (772)
|.|++.+++.+..++..+...-..... -.. .+..++||+||||||||++|+++|+.++.+|+.+++..+.. .|.|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 899999999997666432111100000 011 13467999999999999999999999999999999987653 46665
Q ss_pred h-HHHHHHHHHH----HHHcCCceEEeccccccccCCCCCc---hhhHHHHHHHHHHHhhccc-----------ccCceE
Q 044198 267 S-ESNLREAFNV----AEKNAPSIIFIDEIDSIAPKREKTH---GEVEKRIVSQLLTLMDGMK-----------SRAHVM 327 (772)
Q Consensus 267 ~-~~~l~~~f~~----a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~L~~lld~~~-----------~~~~v~ 327 (772)
. +..+..+++. .....++||||||||.+..+....+ +.....+...|+.+|++.. ...+.+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 4 3334444442 2345678999999999987632211 1112346788999998532 112345
Q ss_pred EEEeeCCCC----------------------------------------------------CCChhhhccCCceeEEEeC
Q 044198 328 VIGATNRPN----------------------------------------------------SIDPALRRSGRFDKEIDIG 355 (772)
Q Consensus 328 vI~atn~~~----------------------------------------------------~ld~al~r~gRf~~~i~i~ 355 (772)
+|.|+|... -+.|++. ||++..+.|.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeecC
Confidence 566655410 0234444 5999999999
Q ss_pred CCCHHHHHHHHH
Q 044198 356 VPDEVGRLEVLR 367 (772)
Q Consensus 356 ~p~~~~r~~Il~ 367 (772)
..+.+...+|+.
T Consensus 311 ~L~~~~L~~Il~ 322 (412)
T PRK05342 311 ELDEEALVRILT 322 (412)
T ss_pred CCCHHHHHHHHH
Confidence 999999999886
No 199
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=7.2e-11 Score=135.69 Aligned_cols=191 Identities=20% Similarity=0.213 Sum_probs=134.5
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEe---------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIK--------- 528 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~--------- 528 (772)
..+|+++.|++.+++.|...+.. + +.+.++||+||+|+|||++|+++|+.+.+.....+
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 35789999999999999887653 1 23567999999999999999999998865321111
Q ss_pred ------------cccchhccc--ccchHHHHHHHHHHHhC----CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHH
Q 044198 529 ------------GPELLTMWF--GESEANVRDVFDKARQS----APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLT 590 (772)
Q Consensus 529 ------------~~~l~~~~v--g~se~~i~~vf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~ 590 (772)
.+|++..-. .-+-..+|++.+.++.. ...|+||||+|.+. ....|.||.
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-------------~~a~naLLK 154 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-------------TAAFNALLK 154 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-------------HHHHHHHHH
Confidence 011110000 01134577777766533 24799999999982 345888999
Q ss_pred HhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHH
Q 044198 591 EMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGA 669 (772)
Q Consensus 591 ~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~ 669 (772)
.|+... ..+.+|++|+.++.+-+.+.+ |+. .+.|..|+.++..+.++..+++.++. ++..+..|++.+.| +.+
T Consensus 155 tLEePp--~~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr 228 (598)
T PRK09111 155 TLEEPP--PHVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVR 228 (598)
T ss_pred HHHhCC--CCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 998643 356666677777777777776 885 89999999999999999888776654 33456677777665 677
Q ss_pred HHHHHHHHHH
Q 044198 670 DITEICQRAC 679 (772)
Q Consensus 670 di~~l~~~a~ 679 (772)
++.+++..+.
T Consensus 229 ~al~~Ldkli 238 (598)
T PRK09111 229 DGLSLLDQAI 238 (598)
T ss_pred HHHHHHHHHH
Confidence 7777666553
No 200
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.31 E-value=9.4e-12 Score=134.01 Aligned_cols=176 Identities=27% Similarity=0.454 Sum_probs=123.9
Q ss_pred cccCcHHHHHHHHHHHHcccCChhHHHHhCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hccc-c
Q 044198 190 DVGGVRKQLGQIREVVELPLRHPQIFKALGV-KPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS-KMAG-E 266 (772)
Q Consensus 190 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~-~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~-~~~g-~ 266 (772)
.|.|++++++.+..++...++...+...+.. ..+.++||+||||||||++|++||+.++.+|+.+++..+.. .|.| +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3899999999998777543222111111110 12578999999999999999999999999999999887764 4666 4
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 044198 267 SESNLREAFNVAE------------------------------------------------------------------- 279 (772)
Q Consensus 267 ~~~~l~~~f~~a~------------------------------------------------------------------- 279 (772)
.+..++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4455555554440
Q ss_pred -----------------------------------------------------------------------HcCCceEEe
Q 044198 280 -----------------------------------------------------------------------KNAPSIIFI 288 (772)
Q Consensus 280 -----------------------------------------------------------------------~~~p~il~i 288 (772)
...-.|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013459999
Q ss_pred ccccccccCCCCCchhh-HHHHHHHHHHHhhccc--------ccCceEEEEee----CCCCCCChhhhccCCceeEEEeC
Q 044198 289 DEIDSIAPKREKTHGEV-EKRIVSQLLTLMDGMK--------SRAHVMVIGAT----NRPNSIDPALRRSGRFDKEIDIG 355 (772)
Q Consensus 289 DEid~l~~~~~~~~~~~-~~~v~~~L~~lld~~~--------~~~~v~vI~at----n~~~~ld~al~r~gRf~~~i~i~ 355 (772)
||||.++.+.+....++ ..-+...|+.+++|-. ...++++|++- ..|++|-|.|. |||...+.+.
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~ 333 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVELD 333 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECC
Confidence 99999997653322232 2347778999998732 23467777653 34566778887 4999999999
Q ss_pred CCCHHHHHHHHH
Q 044198 356 VPDEVGRLEVLR 367 (772)
Q Consensus 356 ~p~~~~r~~Il~ 367 (772)
.++.++..+||.
T Consensus 334 ~L~~~dL~~ILt 345 (443)
T PRK05201 334 ALTEEDFVRILT 345 (443)
T ss_pred CCCHHHHHHHhc
Confidence 999999999984
No 201
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.31 E-value=1.2e-11 Score=130.26 Aligned_cols=138 Identities=16% Similarity=0.186 Sum_probs=100.7
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhc--ccccchHH----------HHHHHHHHHhCCCeEEEE
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM--WFGESEAN----------VRDVFDKARQSAPCVLFF 561 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~--~vg~se~~----------i~~vf~~a~~~~p~ilfi 561 (772)
...+++||.||||||||++++.+|..++.+++.|++...++. ++|..... ....+-.|... ++++++
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~-g~illl 140 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQH-NVALCF 140 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhC-CeEEEe
Confidence 345779999999999999999999999999999988766555 55543211 11233445443 478999
Q ss_pred cCchhhhhccCCCCCCCCchhHHHHHHHHHhcC------------CCCCCcEEEEeecCCCC------------CCCccc
Q 044198 562 DELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDG------------LSAKKTVFVIGATNRPD------------MIDPAL 617 (772)
Q Consensus 562 DEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~------------~~~~~~v~vi~aTn~~~------------~ld~al 617 (772)
||+|..- ..+.+.|...|+. +.....+.||||+|..+ .+++|+
T Consensus 141 DEin~a~-------------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~ 207 (327)
T TIGR01650 141 DEYDAGR-------------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQ 207 (327)
T ss_pred chhhccC-------------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHH
Confidence 9999872 3344555555542 11334788999999854 457888
Q ss_pred cCCCCccccccCCCCCHHHHHHHHHHhhcc
Q 044198 618 LRPGRLDQLIYIPLPDEHSRLQIFKSCLRK 647 (772)
Q Consensus 618 lrpgRf~~~i~~~~p~~~~r~~Il~~~~~~ 647 (772)
+. ||-.++.++.|+.++-.+|+......
T Consensus 208 lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 208 MD--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred Hh--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 87 99888899999999999999876543
No 202
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=7.3e-11 Score=136.57 Aligned_cols=190 Identities=18% Similarity=0.253 Sum_probs=130.1
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEE---------E
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFIS---------I 527 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~---------v 527 (772)
....|+++.|++.+++.|...+..- +...++||+||+|+|||++|+++|+.+.+.... .
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 3467899999999999988776541 124569999999999999999999998652100 0
Q ss_pred ---------ecccch--hcccccchHHHHHHHHHHHhC----CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHh
Q 044198 528 ---------KGPELL--TMWFGESEANVRDVFDKARQS----APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEM 592 (772)
Q Consensus 528 ---------~~~~l~--~~~vg~se~~i~~vf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~l 592 (772)
...+++ ....+..-..++++.+.+... ...|+||||+|.+ .....+.||..|
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-------------t~~a~naLLK~L 145 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-------------STAAFNALLKTL 145 (620)
T ss_pred HHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-------------CHHHHHHHHHHH
Confidence 001111 111122345788888776542 2469999999988 245688999999
Q ss_pred cCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHH
Q 044198 593 DGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADI 671 (772)
Q Consensus 593 d~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di 671 (772)
+. ....+++|++|+.++.+-+.+.+ |+. .+.|+.++.++....++..+++.+.. .+..+..+++.+.| +.+++
T Consensus 146 Ee--Pp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~lr~A 219 (620)
T PRK14948 146 EE--PPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GLRDA 219 (620)
T ss_pred hc--CCcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 95 34567777778888888888887 885 78898888888777777766654433 23446777777655 33444
Q ss_pred HHHHHH
Q 044198 672 TEICQR 677 (772)
Q Consensus 672 ~~l~~~ 677 (772)
.+++..
T Consensus 220 ~~lLek 225 (620)
T PRK14948 220 ESLLDQ 225 (620)
T ss_pred HHHHHH
Confidence 444443
No 203
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.30 E-value=9.4e-11 Score=120.20 Aligned_cols=177 Identities=19% Similarity=0.292 Sum_probs=111.1
Q ss_pred cCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcccchH
Q 044198 192 GGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKMAGESE 268 (772)
Q Consensus 192 ~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~~g~~~ 268 (772)
++.+..++.+++++.. ..+.+++|+||+|||||++|+++++.+ +.+++++++.++....
T Consensus 20 ~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~----- 81 (226)
T TIGR03420 20 GGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD----- 81 (226)
T ss_pred CCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH-----
Confidence 4566677777776542 335689999999999999999999876 4678889987775432
Q ss_pred HHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCC---Chhhhcc
Q 044198 269 SNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSI---DPALRRS 345 (772)
Q Consensus 269 ~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~l---d~al~r~ 345 (772)
..++.... ...+|+|||++.+.... .....|..+++........++++++..+..+ .+.+.+
T Consensus 82 ---~~~~~~~~--~~~lLvIDdi~~l~~~~---------~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~- 146 (226)
T TIGR03420 82 ---PEVLEGLE--QADLVCLDDVEAIAGQP---------EWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT- 146 (226)
T ss_pred ---HHHHhhcc--cCCEEEEeChhhhcCCh---------HHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH-
Confidence 22332222 24599999999875321 1123455555543333333444444344333 267776
Q ss_pred CCc--eeEEEeCCCCHHHHHHHHHHHhcc--CCcccccchhHHHHHhcCCchhhHHHHHHHHH
Q 044198 346 GRF--DKEIDIGVPDEVGRLEVLRIHTKN--MKLAEDVNLETVARETHGFVGADLAALCTEGA 404 (772)
Q Consensus 346 gRf--~~~i~i~~p~~~~r~~Il~~~~~~--~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~ 404 (772)
|| ...+.+++|+.+++..+++.+... +.+.++ .++.++.. -+-...++..+++++.
T Consensus 147 -r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-~l~~L~~~-~~gn~r~L~~~l~~~~ 206 (226)
T TIGR03420 147 -RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDE-VADYLLRH-GSRDMGSLMALLDALD 206 (226)
T ss_pred -HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHh-ccCCHHHHHHHHHHHH
Confidence 55 578999999999999999876543 333332 35566663 3344556666665543
No 204
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.30 E-value=3.3e-11 Score=136.24 Aligned_cols=155 Identities=22% Similarity=0.408 Sum_probs=105.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccC
Q 044198 223 PKGILLHGPPGTGKTLLARAIANET-----GCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPK 297 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l-----~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~ 297 (772)
..+++||||||||||+|++++++++ +..++++++.++...+..........-|.... ..+.+|+|||++.+..+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGK 226 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCC
Confidence 3569999999999999999999987 45688999888765543332211112222221 24679999999988643
Q ss_pred CCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCC---CChhhhccCCce--eEEEeCCCCHHHHHHHHHHHhcc
Q 044198 298 REKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNS---IDPALRRSGRFD--KEIDIGVPDEVGRLEVLRIHTKN 372 (772)
Q Consensus 298 ~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~---ld~al~r~gRf~--~~i~i~~p~~~~r~~Il~~~~~~ 372 (772)
. .....|+.+++........+++++..+|.. +++++++ ||. ..+++..|+.+.|.+||+.....
T Consensus 227 ~---------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 227 E---------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred H---------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 2 122445566655544445566666666654 6788887 885 57999999999999999988764
Q ss_pred --CCcccccchhHHHHHhcC
Q 044198 373 --MKLAEDVNLETVARETHG 390 (772)
Q Consensus 373 --~~l~~~~~l~~la~~t~g 390 (772)
+.+.++ .++.++....|
T Consensus 296 ~~~~l~~e-~l~~ia~~~~~ 314 (450)
T PRK00149 296 EGIDLPDE-VLEFIAKNITS 314 (450)
T ss_pred cCCCCCHH-HHHHHHcCcCC
Confidence 334443 36777776554
No 205
>PRK06620 hypothetical protein; Validated
Probab=99.30 E-value=1.3e-11 Score=124.69 Aligned_cols=145 Identities=17% Similarity=0.248 Sum_probs=97.6
Q ss_pred CceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCC
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVG 576 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~ 576 (772)
..++||||||||||+|+++++...+..++. .... ....+ . ...+++|||||.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~----~-~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL----E-KYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH----h-cCCEEEEeccccch--------
Confidence 679999999999999999999887653322 1100 01111 1 22699999999541
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCC-ccccCCCCcc--ccccCCCCCHHHHHHHHHHhhccCCCC-C
Q 044198 577 DGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMID-PALLRPGRLD--QLIYIPLPDEHSRLQIFKSCLRKSPVS-K 652 (772)
Q Consensus 577 ~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld-~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~~~~~~~-~ 652 (772)
+. .|+..++.+...++.++|+++..|..+. |++.+ |+. .++.+.+||.+++.++++..+...++. +
T Consensus 99 -----~~---~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~ 168 (214)
T PRK06620 99 -----EP---ALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTIS 168 (214)
T ss_pred -----HH---HHHHHHHHHHhcCCEEEEEcCCCccccchHHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 11 2444444444456678888887776421 67776 886 578999999999999999888765554 3
Q ss_pred cccHHHHHHHcCCCCHHHHHHHHHHH
Q 044198 653 DIDLKAIAKYTHGFSGADITEICQRA 678 (772)
Q Consensus 653 ~~~~~~la~~~~g~sg~di~~l~~~a 678 (772)
+.-++.|++...+ +.+.+.+++...
T Consensus 169 ~ev~~~L~~~~~~-d~r~l~~~l~~l 193 (214)
T PRK06620 169 RQIIDFLLVNLPR-EYSKIIEILENI 193 (214)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 4446777776654 667777666654
No 206
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=8.5e-11 Score=136.42 Aligned_cols=184 Identities=20% Similarity=0.296 Sum_probs=127.4
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc--------------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN-------------- 523 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~-------------- 523 (772)
..+|+++.|++.+++.|...+.. + +.+..+||+||+|+|||++|+++|..+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~-----------~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE-----------G-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 45689999999999998876653 1 224457999999999999999999887532
Q ss_pred -----------EEEEecccchhcccccchHHHHHHHHHHHh----CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHH
Q 044198 524 -----------FISIKGPELLTMWFGESEANVRDVFDKARQ----SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQL 588 (772)
Q Consensus 524 -----------~i~v~~~~l~~~~vg~se~~i~~vf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~l 588 (772)
++.++++. ...-..++++.+.+.. ....|+||||+|.+. ...++.|
T Consensus 80 c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~-------------~~a~naL 140 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS-------------TAAFNAL 140 (585)
T ss_pred HHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC-------------HHHHHHH
Confidence 12222211 0112345555444332 234699999999883 3457889
Q ss_pred HHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCC
Q 044198 589 LTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFS 667 (772)
Q Consensus 589 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~s 667 (772)
|..|+... ...++|++|+.++.+.+.+.+ |+. .+.|+.++..+...+++..+++.++. ++..+..|++.+.| +
T Consensus 141 Lk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-d 214 (585)
T PRK14950 141 LKTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-S 214 (585)
T ss_pred HHHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 99998654 355666667777777787776 876 78899999999999988887766554 33446777777765 6
Q ss_pred HHHHHHHHHHH
Q 044198 668 GADITEICQRA 678 (772)
Q Consensus 668 g~di~~l~~~a 678 (772)
.+++.+.+...
T Consensus 215 lr~al~~LekL 225 (585)
T PRK14950 215 MRDAENLLQQL 225 (585)
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 207
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.29 E-value=5.8e-11 Score=122.28 Aligned_cols=189 Identities=27% Similarity=0.389 Sum_probs=121.3
Q ss_pred CCCCccccccCcHHHHHH---HHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe---EEEEec
Q 044198 183 LDDVGYEDVGGVRKQLGQ---IREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY---FLCING 256 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~---i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~---~~~v~~ 256 (772)
..+-+++|..|+++.+.+ |+.+++. ..-.+++|+||||||||+|||.|+.....+ |+.++.
T Consensus 132 mRPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA 198 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA 198 (554)
T ss_pred cCcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEec
Confidence 345567788888876543 4444443 223469999999999999999999987655 666554
Q ss_pred hhhhhhcccchHHHHHHHHHHHHH-----cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEe
Q 044198 257 PEIMSKMAGESESNLREAFNVAEK-----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGA 331 (772)
Q Consensus 257 ~~~~~~~~g~~~~~l~~~f~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~a 331 (772)
.. ...+.++.+|+.++. ....||||||||.+-...+ ..|+- .-..+.|.+||+
T Consensus 199 t~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ-----------D~fLP----~VE~G~I~lIGA 256 (554)
T KOG2028|consen 199 TN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ-----------DTFLP----HVENGDITLIGA 256 (554)
T ss_pred cc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh-----------hcccc----eeccCceEEEec
Confidence 22 234568888887765 3467999999998754322 22222 223567899998
Q ss_pred e--CCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhc------c--CCccc------ccchhHHHHHhcCCchhh
Q 044198 332 T--NRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTK------N--MKLAE------DVNLETVARETHGFVGAD 395 (772)
Q Consensus 332 t--n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~------~--~~l~~------~~~l~~la~~t~g~~~~d 395 (772)
| |+.-.+..+|.+..| ++.+.....+....||..-.. + .++.. +.-++.++..++|-..+.
T Consensus 257 TTENPSFqln~aLlSRC~---VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~a 333 (554)
T KOG2028|consen 257 TTENPSFQLNAALLSRCR---VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAA 333 (554)
T ss_pred ccCCCccchhHHHHhccc---eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHH
Confidence 8 555678889988433 366677778888777764221 1 11221 223677888888876666
Q ss_pred HHHHHHHHHHHhhh
Q 044198 396 LAALCTEGAMQCIR 409 (772)
Q Consensus 396 l~~l~~~a~~~~~~ 409 (772)
+..|--.+.+.+.+
T Consensus 334 LN~Lems~~m~~tr 347 (554)
T KOG2028|consen 334 LNALEMSLSMFCTR 347 (554)
T ss_pred HHHHHHHHHHHHhh
Confidence 65554333343333
No 208
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.29 E-value=4.9e-11 Score=133.18 Aligned_cols=166 Identities=22% Similarity=0.356 Sum_probs=107.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhcccchHH-HHHHHHHHHHHcCCceEEecccccccc
Q 044198 223 PKGILLHGPPGTGKTLLARAIANET-----GCYFLCINGPEIMSKMAGESES-NLREAFNVAEKNAPSIIFIDEIDSIAP 296 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l-----~~~~~~v~~~~~~~~~~g~~~~-~l~~~f~~a~~~~p~il~iDEid~l~~ 296 (772)
..+++||||+|+|||+|++++++++ +..++++++.++...+...... .+....+... .+.+|+|||++.+..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 4569999999999999999999887 4678889988776543322111 1112222222 356999999998864
Q ss_pred CCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCC---CCChhhhccCCce--eEEEeCCCCHHHHHHHHHHHhc
Q 044198 297 KREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPN---SIDPALRRSGRFD--KEIDIGVPDEVGRLEVLRIHTK 371 (772)
Q Consensus 297 ~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~---~ld~al~r~gRf~--~~i~i~~p~~~~r~~Il~~~~~ 371 (772)
+. .....|..+++........+++++..+|. .+++.+++ ||. ..++++.|+.+.|.+|++....
T Consensus 214 ~~---------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 214 KE---------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred CH---------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 32 12244555665554444456666665564 45688887 885 5799999999999999998875
Q ss_pred cCCcc-cccchhHHHHHhcCCchhhHHHHHHH
Q 044198 372 NMKLA-EDVNLETVARETHGFVGADLAALCTE 402 (772)
Q Consensus 372 ~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~ 402 (772)
...+. ++..++.+|....+- .+++...+..
T Consensus 283 ~~~~~l~~e~l~~ia~~~~~~-~r~l~~~l~~ 313 (405)
T TIGR00362 283 EEGLELPDEVLEFIAKNIRSN-VRELEGALNR 313 (405)
T ss_pred HcCCCCCHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence 43332 233467777766543 3445444443
No 209
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.28 E-value=4.3e-11 Score=133.04 Aligned_cols=193 Identities=21% Similarity=0.285 Sum_probs=145.4
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcE-------EE----
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANF-------IS---- 526 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~-------i~---- 526 (772)
.-.|+++.|++.+.+.|...+..- +-..+.||.||-|||||++||.+|+.+++.- ..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 346889999999999999887641 2356699999999999999999999886531 11
Q ss_pred --Eec---ccchhcccc---cchHHHHHHHHHHHh----CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcC
Q 044198 527 --IKG---PELLTMWFG---ESEANVRDVFDKARQ----SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDG 594 (772)
Q Consensus 527 --v~~---~~l~~~~vg---~se~~i~~vf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~ 594 (772)
++- .|++. +-+ .+-..+|++-+++.- ....|.+|||++.| +....|.||..|+.
T Consensus 80 k~I~~g~~~DviE-iDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-------------S~~afNALLKTLEE 145 (515)
T COG2812 80 KEINEGSLIDVIE-IDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-------------SKQAFNALLKTLEE 145 (515)
T ss_pred HhhhcCCcccchh-hhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-------------hHHHHHHHhccccc
Confidence 110 11110 001 123457777776643 34579999999999 46679999999994
Q ss_pred CCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcc-cHHHHHHHcCCCCHHHHHH
Q 044198 595 LSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDI-DLKAIAKYTHGFSGADITE 673 (772)
Q Consensus 595 ~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-~~~~la~~~~g~sg~di~~ 673 (772)
+..+|++|.||..|+.+.+-+++ |+. ++.|...+.++...-+...+.+..+..+. -+..+|+..+| |-+|...
T Consensus 146 --PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDals 219 (515)
T COG2812 146 --PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALS 219 (515)
T ss_pred --CccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHH
Confidence 56689999999999999999997 886 78899999999999999888887776444 46677777766 7799988
Q ss_pred HHHHHHHHH
Q 044198 674 ICQRACKCA 682 (772)
Q Consensus 674 l~~~a~~~a 682 (772)
+...|....
T Consensus 220 lLDq~i~~~ 228 (515)
T COG2812 220 LLDQAIAFG 228 (515)
T ss_pred HHHHHHHcc
Confidence 888886553
No 210
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.28 E-value=1.7e-10 Score=117.23 Aligned_cols=163 Identities=26% Similarity=0.448 Sum_probs=102.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhcccchHH-HHHHHHHHHHHcCCceEEecccccccc
Q 044198 223 PKGILLHGPPGTGKTLLARAIANET-----GCYFLCINGPEIMSKMAGESES-NLREAFNVAEKNAPSIIFIDEIDSIAP 296 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l-----~~~~~~v~~~~~~~~~~g~~~~-~l~~~f~~a~~~~p~il~iDEid~l~~ 296 (772)
..+++||||+|+|||+|++++++++ +..++++++.++...+...... .+.. |..-. ....+|+||+++.+..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~-~~~~~-~~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEE-FKDRL-RSADLLIIDDIQFLAG 111 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHH-HHHHH-CTSSEEEEETGGGGTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchh-hhhhh-hcCCEEEEecchhhcC
Confidence 3469999999999999999999875 4568899988876554322211 1112 22111 2456999999998853
Q ss_pred CCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCC---CChhhhccCCce--eEEEeCCCCHHHHHHHHHHHhc
Q 044198 297 KREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNS---IDPALRRSGRFD--KEIDIGVPDEVGRLEVLRIHTK 371 (772)
Q Consensus 297 ~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~---ld~al~r~gRf~--~~i~i~~p~~~~r~~Il~~~~~ 371 (772)
+ ..+...|..+++....+...+++++..+|.. +++.+++ ||. ..+++..|+.+.|.+|++....
T Consensus 112 ~---------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 112 K---------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp H---------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHH
T ss_pred c---------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHH
Confidence 2 2345778888888777777677766666654 5788888 764 5789999999999999997765
Q ss_pred c--CCcccccchhHHHHHhcCCchhhHHHHH
Q 044198 372 N--MKLAEDVNLETVARETHGFVGADLAALC 400 (772)
Q Consensus 372 ~--~~l~~~~~l~~la~~t~g~~~~dl~~l~ 400 (772)
. +.+.++ -++.++....+ ..+++..++
T Consensus 181 ~~~~~l~~~-v~~~l~~~~~~-~~r~L~~~l 209 (219)
T PF00308_consen 181 ERGIELPEE-VIEYLARRFRR-DVRELEGAL 209 (219)
T ss_dssp HTT--S-HH-HHHHHHHHTTS-SHHHHHHHH
T ss_pred HhCCCCcHH-HHHHHHHhhcC-CHHHHHHHH
Confidence 4 333333 24555555433 333444433
No 211
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=8.6e-11 Score=128.86 Aligned_cols=193 Identities=20% Similarity=0.260 Sum_probs=123.7
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEE--------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLC-------- 253 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~-------- 253 (772)
+..+.+|++|.|.+..++.++..+... ..++.+||+||+|+||||+|+++|+.+.+....
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 345678999999999999998887641 224568999999999999999999988642100
Q ss_pred Eechhhhh----------hcccchHHHHHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhc
Q 044198 254 INGPEIMS----------KMAGESESNLREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDG 319 (772)
Q Consensus 254 v~~~~~~~----------~~~g~~~~~l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~ 319 (772)
.+|.++.. .........++.+.+.+.. ....+++|||+|.+.. ...+.|+..++.
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a~naLLk~lEe 145 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HSFNALLKTLEE 145 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HHHHHHHHHHhc
Confidence 00111100 0001223445555554432 2345999999998742 223557777765
Q ss_pred ccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCc-ccccchhHHHHHhcCCchhhHHH
Q 044198 320 MKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKL-AEDVNLETVARETHGFVGADLAA 398 (772)
Q Consensus 320 ~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~ 398 (772)
.. ..+.+|.+|+.++.+.+++++ |+ ..+++++|+.++..++++..++.... .++..++.++..+.| ..+++..
T Consensus 146 ~~--~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al~ 219 (363)
T PRK14961 146 PP--QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDALN 219 (363)
T ss_pred CC--CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 32 356667777778889999887 77 45899999999999988876654332 122346667776655 3444444
Q ss_pred HHHHH
Q 044198 399 LCTEG 403 (772)
Q Consensus 399 l~~~a 403 (772)
++..+
T Consensus 220 ~l~~~ 224 (363)
T PRK14961 220 LLEHA 224 (363)
T ss_pred HHHHH
Confidence 44443
No 212
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.28 E-value=1e-10 Score=122.37 Aligned_cols=132 Identities=26% Similarity=0.295 Sum_probs=92.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechh------hhhhcccchHHH-HH--------------------HHH
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLCINGPE------IMSKMAGESESN-LR--------------------EAF 275 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~------~~~~~~g~~~~~-l~--------------------~~f 275 (772)
..++||+||||||||++|+++|..++.+++.++|.. +++.+.+..... +. .++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 568999999999999999999999999999998743 333322211111 00 111
Q ss_pred HHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc--------------ccCceEEEEeeCCC-----C
Q 044198 276 NVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK--------------SRAHVMVIGATNRP-----N 336 (772)
Q Consensus 276 ~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~--------------~~~~v~vI~atn~~-----~ 336 (772)
. +.. .+.++++||++.+.+ .+.+.|+.+++... ...++.+|+|+|+. .
T Consensus 101 ~-A~~-~g~~lllDEi~r~~~-----------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 101 L-AVR-EGFTLVYDEFTRSKP-----------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred H-HHH-cCCEEEEcchhhCCH-----------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 1 222 346999999987642 34456666665321 22367899999986 3
Q ss_pred CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHh
Q 044198 337 SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHT 370 (772)
Q Consensus 337 ~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~ 370 (772)
.+++++.+ || ..+.++.|+.++..+|++.+.
T Consensus 168 ~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 168 ETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 66889998 88 468999999999999998775
No 213
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=9.9e-11 Score=118.94 Aligned_cols=131 Identities=23% Similarity=0.355 Sum_probs=90.9
Q ss_pred ccccchHHHHHHHhhhccccCCchHHHhhcC----CC-CCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch-hc
Q 044198 462 ADIGGLDTVKRELQETVQYPVEHPEMFEKFG----MS-PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL-TM 535 (772)
Q Consensus 462 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~----~~-~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~-~~ 535 (772)
+.+.|++.+|+.|.=++-. |-.++.... +. ..+++||.||+|||||.||+.+|+.++.||-.-++..|. ..
T Consensus 61 ~YVIGQe~AKKvLsVAVYN---HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYN---HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred hheecchhhhceeeeeehh---HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 4578888888876544322 212221111 11 245799999999999999999999999999888887765 45
Q ss_pred ccccchHH-HHHHHHHHH----hCCCeEEEEcCchhhhhccCCCCCCCCc-hhHHHHHHHHHhcCC
Q 044198 536 WFGESEAN-VRDVFDKAR----QSAPCVLFFDELDSIAIQRGSSVGDGGG-VDRIVNQLLTEMDGL 595 (772)
Q Consensus 536 ~vg~se~~-i~~vf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~-~~~~~~~lL~~ld~~ 595 (772)
|||+.-.+ +-.+.+.|. +....|++|||||.++.+..+.+-..+. ++-+.+.||..++|-
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 99997554 455554431 2234699999999998776443322222 677899999999984
No 214
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=1.2e-10 Score=131.89 Aligned_cols=187 Identities=17% Similarity=0.245 Sum_probs=127.0
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY----------- 250 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~----------- 250 (772)
+..+-+|+++.|.+..++.|+.++... ..++.+||+||+|+||||+|+++|+.+++.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 345678999999999999998888641 234678999999999999999999998652
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHHH----HcCCceEEeccccccccCCCCCchhhHHHHHHHH
Q 044198 251 -------------FLCINGPEIMSKMAGESESNLREAFNVAE----KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQL 313 (772)
Q Consensus 251 -------------~~~v~~~~~~~~~~g~~~~~l~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 313 (772)
++.+++.+ ......++.+...+. .....|++|||+|.+.. ...+.|
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-----------~A~NAL 138 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-----------HSFNAL 138 (702)
T ss_pred HHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----------HHHHHH
Confidence 22333221 012334555554432 23456999999998843 234677
Q ss_pred HHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCc
Q 044198 314 LTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFV 392 (772)
Q Consensus 314 ~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 392 (772)
+..++... ..+.+|.+|+.+..+.+.+++ |+. .++|..++.++....++..+....+. ++..+..+++.+.| .
T Consensus 139 LKtLEEPP--~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-d 212 (702)
T PRK14960 139 LKTLEEPP--EHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-S 212 (702)
T ss_pred HHHHhcCC--CCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 77777543 456777778888888888886 774 48899999998888887666543322 22346677777665 4
Q ss_pred hhhHHHHHHHH
Q 044198 393 GADLAALCTEG 403 (772)
Q Consensus 393 ~~dl~~l~~~a 403 (772)
.+++..++..+
T Consensus 213 LRdALnLLDQa 223 (702)
T PRK14960 213 LRDALSLTDQA 223 (702)
T ss_pred HHHHHHHHHHH
Confidence 44555555444
No 215
>PLN03025 replication factor C subunit; Provisional
Probab=99.26 E-value=7.7e-11 Score=127.20 Aligned_cols=172 Identities=19% Similarity=0.226 Sum_probs=115.8
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CeEEEEec
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG-----CYFLCING 256 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~-----~~~~~v~~ 256 (772)
+..+-+++++.|.++.++.|+.++... ...++||+||||||||++|+++|+++. ..++.+++
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 456778899999999999988776541 124699999999999999999999873 23556665
Q ss_pred hhhhhhcccchHHHHHHHHHHHHH-------cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEE
Q 044198 257 PEIMSKMAGESESNLREAFNVAEK-------NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVI 329 (772)
Q Consensus 257 ~~~~~~~~g~~~~~l~~~f~~a~~-------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI 329 (772)
++..+ ...++........ ....+++|||+|.+... ..+.|+..++.... ...+|
T Consensus 73 sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-----------aq~aL~~~lE~~~~--~t~~i 133 (319)
T PLN03025 73 SDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-----------AQQALRRTMEIYSN--TTRFA 133 (319)
T ss_pred ccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH-----------HHHHHHHHHhcccC--CceEE
Confidence 54321 1123333222111 23569999999988532 13556666664333 34466
Q ss_pred EeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhcc--CCcccccchhHHHHHhc
Q 044198 330 GATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKN--MKLAEDVNLETVARETH 389 (772)
Q Consensus 330 ~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~--~~l~~~~~l~~la~~t~ 389 (772)
.+||....+.+++++ |. ..++|+.|+.++....++..++. +.+.++ .+..++..+.
T Consensus 134 l~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~-~l~~i~~~~~ 191 (319)
T PLN03025 134 LACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPE-GLEAIIFTAD 191 (319)
T ss_pred EEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC
Confidence 688888888899998 65 35899999999998888876543 333332 4666666554
No 216
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.26 E-value=4.5e-11 Score=112.84 Aligned_cols=122 Identities=46% Similarity=0.684 Sum_probs=85.6
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhcccccchHH---HHHHHHHHHhCCCeEEEEcCchhhh
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGESEAN---VRDVFDKARQSAPCVLFFDELDSIA 568 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~se~~---i~~vf~~a~~~~p~ilfiDEid~l~ 568 (772)
...+++++||||||||++++.++..+ +.+++.++..+....+....... ....+..+....+.++++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45679999999999999999999998 88899888887654432221111 1222334445567899999999872
Q ss_pred hccCCCCCCCCchhHHHHHHHHHhcCCCC----CCcEEEEeecCCCC--CCCccccCCCCccccccCCC
Q 044198 569 IQRGSSVGDGGGVDRIVNQLLTEMDGLSA----KKTVFVIGATNRPD--MIDPALLRPGRLDQLIYIPL 631 (772)
Q Consensus 569 ~~r~~~~~~~~~~~~~~~~lL~~ld~~~~----~~~v~vi~aTn~~~--~ld~allrpgRf~~~i~~~~ 631 (772)
......++..+..... ..++.+|++||.+. .+++.+.. ||+.++.+++
T Consensus 98 -------------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 98 -------------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred -------------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 2233455555555433 46788999999877 67777776 9987887763
No 217
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=1.7e-10 Score=134.33 Aligned_cols=192 Identities=20% Similarity=0.280 Sum_probs=124.1
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEE--------E
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFL--------C 253 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~--------~ 253 (772)
++.+.+|++|.|.+..++.|+.++... ..++.+||+||+||||||+||++|+.+++... +
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 456678999999999999998887641 22445799999999999999999999875310 0
Q ss_pred Eechhhhhh-------ccc---chHHHHHHHHHHHH----HcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhc
Q 044198 254 INGPEIMSK-------MAG---ESESNLREAFNVAE----KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDG 319 (772)
Q Consensus 254 v~~~~~~~~-------~~g---~~~~~l~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~ 319 (772)
-.|..+... +.+ .....++.+.+... .....|+||||+|.+. ....+.|+..|+.
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-----------~eAqNALLKtLEE 145 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-----------RSSFNALLKTLEE 145 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-----------HHHHHHHHHHHhc
Confidence 011111100 000 11233454444332 2334699999999884 2345778888876
Q ss_pred ccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCchhhHHH
Q 044198 320 MKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVGADLAA 398 (772)
Q Consensus 320 ~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~ 398 (772)
.. ..+.+|++|+.+..|.+.+++ |. ..+.|..++.++..+.|+..+....+. .+..+..++..+.|-. ++...
T Consensus 146 PP--~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~-R~ALn 219 (944)
T PRK14949 146 PP--EHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSM-RDALS 219 (944)
T ss_pred cC--CCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHH
Confidence 43 456677778888889899888 76 448999999999888887665432222 2224666777666643 34444
Q ss_pred HHHH
Q 044198 399 LCTE 402 (772)
Q Consensus 399 l~~~ 402 (772)
++..
T Consensus 220 LLdQ 223 (944)
T PRK14949 220 LTDQ 223 (944)
T ss_pred HHHH
Confidence 4443
No 218
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.25 E-value=9.9e-11 Score=126.48 Aligned_cols=158 Identities=24% Similarity=0.363 Sum_probs=111.3
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
+..+-+++++.|.++..+.++.++... ..+..+||+||||+|||++++++++.++..++.+++.+ .
T Consensus 14 kyrP~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~ 79 (316)
T PHA02544 14 KYRPSTIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--C 79 (316)
T ss_pred ccCCCcHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--c
Confidence 455678899999999999998888631 22445777999999999999999999988888998865 1
Q ss_pred hcccchHHHHHHHHHHHH-HcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCCh
Q 044198 262 KMAGESESNLREAFNVAE-KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDP 340 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~ 340 (772)
. .......+........ ...+.+++|||+|.+... .....|..+++... .++.+|.+||.+..+.+
T Consensus 80 ~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~----------~~~~~L~~~le~~~--~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 80 R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA----------DAQRHLRSFMEAYS--KNCSFIITANNKNGIIE 146 (316)
T ss_pred c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH----------HHHHHHHHHHHhcC--CCceEEEEcCChhhchH
Confidence 1 1111122222211111 134679999999877211 12244556666543 35677789999999999
Q ss_pred hhhccCCceeEEEeCCCCHHHHHHHHHHH
Q 044198 341 ALRRSGRFDKEIDIGVPDEVGRLEVLRIH 369 (772)
Q Consensus 341 al~r~gRf~~~i~i~~p~~~~r~~Il~~~ 369 (772)
++++ ||. .+.++.|+.+++.++++..
T Consensus 147 ~l~s--R~~-~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 147 PLRS--RCR-VIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred HHHh--hce-EEEeCCCCHHHHHHHHHHH
Confidence 9998 885 5899999999998887654
No 219
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.25 E-value=5.6e-11 Score=127.31 Aligned_cols=162 Identities=23% Similarity=0.347 Sum_probs=108.1
Q ss_pred cCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhC-------CcEEE-E
Q 044198 456 VPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFIS-I 527 (772)
Q Consensus 456 ~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~-------~~~i~-v 527 (772)
.+...|++|.|++++|..|.-....| ...++||.|++|||||++|++++..+. .+|.. -
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p 77 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHP 77 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCC
Confidence 34567899999999999988765542 346799999999999999999987762 12220 0
Q ss_pred ecccch-----h---------------cc----cccchHH------HHHHHHHHH---------hCCCeEEEEcCchhhh
Q 044198 528 KGPELL-----T---------------MW----FGESEAN------VRDVFDKAR---------QSAPCVLFFDELDSIA 568 (772)
Q Consensus 528 ~~~~l~-----~---------------~~----vg~se~~------i~~vf~~a~---------~~~p~ilfiDEid~l~ 568 (772)
..++.. . ++ .|.++.. +...|.... +....+||+||++.+
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL- 156 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL- 156 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC-
Confidence 000100 0 00 1112211 111221111 111259999999998
Q ss_pred hccCCCCCCCCchhHHHHHHHHHhcCCC-----------CCCcEEEEeecCCCC-CCCccccCCCCccccccCCCCC-HH
Q 044198 569 IQRGSSVGDGGGVDRIVNQLLTEMDGLS-----------AKKTVFVIGATNRPD-MIDPALLRPGRLDQLIYIPLPD-EH 635 (772)
Q Consensus 569 ~~r~~~~~~~~~~~~~~~~lL~~ld~~~-----------~~~~v~vi~aTn~~~-~ld~allrpgRf~~~i~~~~p~-~~ 635 (772)
...+++.||..|+... ...++++|+|.|..+ .+.++++. ||..++.+..|+ .+
T Consensus 157 ------------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~ 222 (350)
T CHL00081 157 ------------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPE 222 (350)
T ss_pred ------------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChH
Confidence 3567778888886421 235788888888765 68889998 999999999987 69
Q ss_pred HHHHHHHHhh
Q 044198 636 SRLQIFKSCL 645 (772)
Q Consensus 636 ~r~~Il~~~~ 645 (772)
++.+|++...
T Consensus 223 ~e~~il~~~~ 232 (350)
T CHL00081 223 LRVKIVEQRT 232 (350)
T ss_pred HHHHHHHhhh
Confidence 9999998864
No 220
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.5e-10 Score=118.38 Aligned_cols=82 Identities=22% Similarity=0.359 Sum_probs=63.7
Q ss_pred eEEEEcCchhhhhccCCCCCCCCc-hhHHHHHHHHHhcCCC--------CCCcEEEEeec----CCCCCCCccccCCCCc
Q 044198 557 CVLFFDELDSIAIQRGSSVGDGGG-VDRIVNQLLTEMDGLS--------AKKTVFVIGAT----NRPDMIDPALLRPGRL 623 (772)
Q Consensus 557 ~ilfiDEid~l~~~r~~~~~~~~~-~~~~~~~lL~~ld~~~--------~~~~v~vi~aT----n~~~~ld~allrpgRf 623 (772)
.|+||||||.++.+.+.+.+ +. -.-+.-.||-.++|-. ..+++++||+. ..|+.|=|.|. |||
T Consensus 252 GIvFIDEIDKIa~~~~~g~~--dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGP--DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRF 327 (444)
T ss_pred CeEEEehhhHHHhcCCCCCC--CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCC
Confidence 59999999999987653211 22 3446777888888742 34678888887 46888888887 799
Q ss_pred cccccCCCCCHHHHHHHHH
Q 044198 624 DQLIYIPLPDEHSRLQIFK 642 (772)
Q Consensus 624 ~~~i~~~~p~~~~r~~Il~ 642 (772)
.-.+++...+.+.-..||.
T Consensus 328 PIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 328 PIRVELDALTKEDFERILT 346 (444)
T ss_pred ceEEEcccCCHHHHHHHHc
Confidence 9999999999999888884
No 221
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.25 E-value=3.5e-10 Score=123.39 Aligned_cols=188 Identities=22% Similarity=0.326 Sum_probs=120.5
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CeEEEEec
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG-----CYFLCING 256 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~-----~~~~~v~~ 256 (772)
+..+.+++++.|.+..++.+..++..+ ...+++|+||||||||++|+++++++. .+++.+++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 345667889999999999998877641 123699999999999999999999874 34677887
Q ss_pred hhhhhhcc-------------cc-------hHHHHHHHHHHHHHc-----CCceEEeccccccccCCCCCchhhHHHHHH
Q 044198 257 PEIMSKMA-------------GE-------SESNLREAFNVAEKN-----APSIIFIDEIDSIAPKREKTHGEVEKRIVS 311 (772)
Q Consensus 257 ~~~~~~~~-------------g~-------~~~~l~~~f~~a~~~-----~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 311 (772)
.++..... +. ....++.+.+..... .+.+++|||++.+.+ ....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-----------~~~~ 143 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-----------DAQQ 143 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-----------HHHH
Confidence 76542210 00 112233333333222 245999999997742 1234
Q ss_pred HHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcC
Q 044198 312 QLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHG 390 (772)
Q Consensus 312 ~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g 390 (772)
.|..+++..... ..+|.+++.+..+.+.+++ |+ ..+++.+|+.++...+++..+....+. ++..++.++..+
T Consensus 144 ~L~~~le~~~~~--~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~-- 216 (337)
T PRK12402 144 ALRRIMEQYSRT--CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA-- 216 (337)
T ss_pred HHHHHHHhccCC--CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--
Confidence 566666654332 3455566666677778877 65 458999999999999998776543322 233466666655
Q ss_pred CchhhHHHHHHH
Q 044198 391 FVGADLAALCTE 402 (772)
Q Consensus 391 ~~~~dl~~l~~~ 402 (772)
+.|+..+...
T Consensus 217 --~gdlr~l~~~ 226 (337)
T PRK12402 217 --GGDLRKAILT 226 (337)
T ss_pred --CCCHHHHHHH
Confidence 3455554433
No 222
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=4.9e-10 Score=129.82 Aligned_cols=184 Identities=18% Similarity=0.292 Sum_probs=131.9
Q ss_pred cccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCC----------------
Q 044198 459 VRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQA---------------- 522 (772)
Q Consensus 459 v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~---------------- 522 (772)
.+|++|.|++.+++.|...+.. + ..+..+|||||+|+|||++|+++|..+.+
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~-----------~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIAT-----------N-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 4689999999999998877653 1 23455899999999999999999998752
Q ss_pred ---------cEEEEecccchhcccccchHHHHHHHHHHHhC----CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHH
Q 044198 523 ---------NFISIKGPELLTMWFGESEANVRDVFDKARQS----APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLL 589 (772)
Q Consensus 523 ---------~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL 589 (772)
+++.+++.+. .+-..++.+.+.+... ...|++|||+|.+. ....+.||
T Consensus 82 ~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls-------------~~a~naLL 142 (614)
T PRK14971 82 VAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS-------------QAAFNAFL 142 (614)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC-------------HHHHHHHH
Confidence 3333333211 1234577776665433 23699999999882 44688899
Q ss_pred HHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCC-cccHHHHHHHcCCCCH
Q 044198 590 TEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSK-DIDLKAIAKYTHGFSG 668 (772)
Q Consensus 590 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~~~~~la~~~~g~sg 668 (772)
..|+... ...++|++|+.+..|-+++.+ |+. ++.|.+++.++....++..+++.++.- +..+..|++.+.| +.
T Consensus 143 K~LEepp--~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dl 216 (614)
T PRK14971 143 KTLEEPP--SYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GM 216 (614)
T ss_pred HHHhCCC--CCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 9999643 355666666677888888887 886 799999999999999988887766653 3347778877754 55
Q ss_pred HHHHHHHHHHH
Q 044198 669 ADITEICQRAC 679 (772)
Q Consensus 669 ~di~~l~~~a~ 679 (772)
+++.+++....
T Consensus 217 r~al~~Lekl~ 227 (614)
T PRK14971 217 RDALSIFDQVV 227 (614)
T ss_pred HHHHHHHHHHH
Confidence 66655554443
No 223
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=2.1e-10 Score=131.78 Aligned_cols=185 Identities=20% Similarity=0.307 Sum_probs=125.5
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY------------ 250 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~------------ 250 (772)
..+-+|++|.|.+..++.|+..+... ..+..+||+||+|+||||+|+.+|+.+++.
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 45678999999999999998888651 124458999999999999999999988662
Q ss_pred ------------EEEEechhhhhhcccchHHHHHHHHHHHH----HcCCceEEeccccccccCCCCCchhhHHHHHHHHH
Q 044198 251 ------------FLCINGPEIMSKMAGESESNLREAFNVAE----KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLL 314 (772)
Q Consensus 251 ------------~~~v~~~~~~~~~~g~~~~~l~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~ 314 (772)
++.+++.+ ......++.+.+.+. .....|+||||+|.+.. ...+.|+
T Consensus 78 ~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-----------~a~NALL 140 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALL 140 (647)
T ss_pred HHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-----------HHHHHHH
Confidence 12222211 012233455444332 23456999999998842 2357788
Q ss_pred HHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCch
Q 044198 315 TLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVG 393 (772)
Q Consensus 315 ~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~ 393 (772)
..++.. ...+.+|.+|+.+..|.+.+++ |+ ..+.|..++.++-.+.|+..+....+. ++..+..++..+.|-..
T Consensus 141 KtLEEP--p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R 215 (647)
T PRK07994 141 KTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMR 215 (647)
T ss_pred HHHHcC--CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 888763 3457777778888899999998 75 568999999999888888765432222 22346667777666443
Q ss_pred hhHHHHHHH
Q 044198 394 ADLAALCTE 402 (772)
Q Consensus 394 ~dl~~l~~~ 402 (772)
+...++..
T Consensus 216 -~Al~lldq 223 (647)
T PRK07994 216 -DALSLTDQ 223 (647)
T ss_pred -HHHHHHHH
Confidence 44444443
No 224
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.23 E-value=7.2e-10 Score=114.07 Aligned_cols=172 Identities=17% Similarity=0.220 Sum_probs=105.0
Q ss_pred CCcccccc-C-cHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CeEEEEechhh
Q 044198 185 DVGYEDVG-G-VRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG---CYFLCINGPEI 259 (772)
Q Consensus 185 ~~~~~~i~-G-~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~---~~~~~v~~~~~ 259 (772)
+.+|++.. | -...+..++++... ....+++|+||+|||||+|++++++.+. ..+.+++..+.
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 44555533 3 44455555555432 1235799999999999999999998763 34555554432
Q ss_pred hhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCce-EEEEeeCCCCC-
Q 044198 260 MSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHV-MVIGATNRPNS- 337 (772)
Q Consensus 260 ~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v-~vI~atn~~~~- 337 (772)
.. ....+++.... ..+++|||++.+..+. .....|..+++........ ++++++++|..
T Consensus 85 ~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~---------~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 85 AW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE---------LWEMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred hh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH---------HHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 21 11122222222 2589999999875321 1223455555554444443 44445556554
Q ss_pred --CChhhhccCCce--eEEEeCCCCHHHHHHHHHHHhc--cCCcccccchhHHHHHhcCC
Q 044198 338 --IDPALRRSGRFD--KEIDIGVPDEVGRLEVLRIHTK--NMKLAEDVNLETVARETHGF 391 (772)
Q Consensus 338 --ld~al~r~gRf~--~~i~i~~p~~~~r~~Il~~~~~--~~~l~~~~~l~~la~~t~g~ 391 (772)
+.|.+++ |+. ..+++..|+.+++.++++.... ++.+.++ -++.+++...+-
T Consensus 146 ~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~-v~~~L~~~~~~d 202 (235)
T PRK08084 146 NLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPED-VGRFLLKRLDRE 202 (235)
T ss_pred CcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhhcCC
Confidence 6799998 774 7899999999999999987544 3444443 366677666553
No 225
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=2.8e-10 Score=128.20 Aligned_cols=194 Identities=22% Similarity=0.305 Sum_probs=131.6
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEE---------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFL--------- 252 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~--------- 252 (772)
++.+-+|+++.|.+..++.|+..+..- ..+.++||+||+||||||+|+++|+.+++...
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 346778999999999999888776541 23567999999999999999999999865211
Q ss_pred ---EEechhhhhh----------cccchHHHHHHHHHHHHHc----CCceEEeccccccccCCCCCchhhHHHHHHHHHH
Q 044198 253 ---CINGPEIMSK----------MAGESESNLREAFNVAEKN----APSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLT 315 (772)
Q Consensus 253 ---~v~~~~~~~~----------~~g~~~~~l~~~f~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~ 315 (772)
.-+|..+... ........++.+++.+... ...|++|||+|.+.. ...+.|+.
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~naLLk 150 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAFNALLK 150 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHHHHHHH
Confidence 1111111110 0112345667777666432 345999999998842 22456666
Q ss_pred HhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCchh
Q 044198 316 LMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVGA 394 (772)
Q Consensus 316 lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~ 394 (772)
.++.. ...+++|.+|+.++.+.+.+++ |.. .+++..++.++...+++..++..... ++..++.++..+.| +.+
T Consensus 151 ~LEep--p~~~vfI~aTte~~kI~~tI~S--Rc~-~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR 224 (507)
T PRK06645 151 TLEEP--PPHIIFIFATTEVQKIPATIIS--RCQ-RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SAR 224 (507)
T ss_pred HHhhc--CCCEEEEEEeCChHHhhHHHHh--cce-EEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66642 3467777778888889999987 774 58899999999999998777543332 22346778887766 455
Q ss_pred hHHHHHHHHH
Q 044198 395 DLAALCTEGA 404 (772)
Q Consensus 395 dl~~l~~~a~ 404 (772)
++..++..+.
T Consensus 225 ~al~~Ldkai 234 (507)
T PRK06645 225 DAVSILDQAA 234 (507)
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 226
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.23 E-value=2.9e-10 Score=133.75 Aligned_cols=136 Identities=21% Similarity=0.288 Sum_probs=91.7
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhc--ccccc-------hHH-HHHHHHHHHhCCCeEEEEcC
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM--WFGES-------EAN-VRDVFDKARQSAPCVLFFDE 563 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~--~vg~s-------e~~-i~~vf~~a~~~~p~ilfiDE 563 (772)
+-.+++||.|.||+|||+|..++|++.|..+++++.++-..- .+|.. +-. ...-|-.|.+.. .-+++||
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDE 1619 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDE 1619 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEeeh
Confidence 345679999999999999999999999999999998753211 11211 000 111233343333 3788999
Q ss_pred chhhhhccCCCCCCCCchhHHHHHHHHHhcCC------------CCCCcEEEEeecCCC------CCCCccccCCCCccc
Q 044198 564 LDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGL------------SAKKTVFVIGATNRP------DMIDPALLRPGRLDQ 625 (772)
Q Consensus 564 id~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~------------~~~~~v~vi~aTn~~------~~ld~allrpgRf~~ 625 (772)
+.-. +..++.-|=..||.- ....+..|+||-|.- ..|+..++. ||.
T Consensus 1620 iNLa-------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs- 1683 (4600)
T COG5271 1620 INLA-------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS- 1683 (4600)
T ss_pred hhhh-------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-
Confidence 8643 344555555555432 234567788888863 478889998 997
Q ss_pred cccCCCCCHHHHHHHHHHhhc
Q 044198 626 LIYIPLPDEHSRLQIFKSCLR 646 (772)
Q Consensus 626 ~i~~~~p~~~~r~~Il~~~~~ 646 (772)
+|++...+.+....|......
T Consensus 1684 vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1684 VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred eEEecccccchHHHHHHhhCC
Confidence 888998888888888876653
No 227
>PRK06893 DNA replication initiation factor; Validated
Probab=99.23 E-value=2.1e-10 Score=117.57 Aligned_cols=147 Identities=13% Similarity=0.234 Sum_probs=95.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCC
Q 044198 224 KGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREK 300 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~ 300 (772)
..++||||||||||+|++++|+++ +....+++..... .....+++... ...+|+|||++.+..+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 358999999999999999999886 3344444432211 11112233222 34699999999886432
Q ss_pred CchhhHHHHHHHHHHHhhcccccCc-eEEEEeeCCCCCCC---hhhhccCCceeEEEeCCCCHHHHHHHHHHHhc--cCC
Q 044198 301 THGEVEKRIVSQLLTLMDGMKSRAH-VMVIGATNRPNSID---PALRRSGRFDKEIDIGVPDEVGRLEVLRIHTK--NMK 374 (772)
Q Consensus 301 ~~~~~~~~v~~~L~~lld~~~~~~~-v~vI~atn~~~~ld---~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~--~~~ 374 (772)
.....|.++++....... +++++++.+|..++ +.+++..++...+.++.|+.+++.+|++.... ++.
T Consensus 108 -------~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~ 180 (229)
T PRK06893 108 -------EWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE 180 (229)
T ss_pred -------HHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 122346666666555443 45566666676554 88988556678899999999999999997654 344
Q ss_pred cccccchhHHHHHhcC
Q 044198 375 LAEDVNLETVARETHG 390 (772)
Q Consensus 375 l~~~~~l~~la~~t~g 390 (772)
+.++ .+..+++...|
T Consensus 181 l~~~-v~~~L~~~~~~ 195 (229)
T PRK06893 181 LSDE-VANFLLKRLDR 195 (229)
T ss_pred CCHH-HHHHHHHhccC
Confidence 4443 36667766554
No 228
>PRK09087 hypothetical protein; Validated
Probab=99.22 E-value=8.3e-11 Score=119.91 Aligned_cols=172 Identities=19% Similarity=0.212 Sum_probs=111.4
Q ss_pred CceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCC
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVG 576 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~ 576 (772)
..++|+||+|||||||+++++...+..++ +..++.. +++..... .+|+|||++.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~-----------~~~~~~~~---~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGS-----------DAANAAAE---GPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcch-----------HHHHhhhc---CeEEEECCCCCCC-------
Confidence 34899999999999999999987665433 3322211 11111112 3788999997621
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCC---CccccCCCCcc--ccccCCCCCHHHHHHHHHHhhccCCCC
Q 044198 577 DGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMI---DPALLRPGRLD--QLIYIPLPDEHSRLQIFKSCLRKSPVS 651 (772)
Q Consensus 577 ~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l---d~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~~~~~~~ 651 (772)
. ..+|+..++.+...++.+||+++..|..+ .+.+.+ ||. .++.+.+|+.++|.+|++.+++...+.
T Consensus 102 ----~---~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~ 172 (226)
T PRK09087 102 ----D---ETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLY 172 (226)
T ss_pred ----C---HHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 1 12355555555555667777777666533 577776 886 799999999999999999999876554
Q ss_pred -CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhC
Q 044198 652 -KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYA 721 (772)
Q Consensus 652 -~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~ 721 (772)
++.-++.|++...+ +-+.+..++......+.... .+||...++++++.+
T Consensus 173 l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~--------------------~~it~~~~~~~l~~~ 222 (226)
T PRK09087 173 VDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK--------------------SRITRALAAEVLNEM 222 (226)
T ss_pred CCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC--------------------CCCCHHHHHHHHHhh
Confidence 34456777776653 33444443334333232221 268888888888764
No 229
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.21 E-value=2e-10 Score=128.32 Aligned_cols=155 Identities=19% Similarity=0.328 Sum_probs=100.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCC
Q 044198 223 PKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKRE 299 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~ 299 (772)
..+++||||+|+|||+|++++++.+ +..++++++.++...+.......-...|.... ..+.+|+|||++.+..+..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~ 219 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA 219 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh
Confidence 3579999999999999999999876 56788888876654432221111112233322 3467999999998864321
Q ss_pred CCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCC---CCCChhhhccCCce--eEEEeCCCCHHHHHHHHHHHhccCC
Q 044198 300 KTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP---NSIDPALRRSGRFD--KEIDIGVPDEVGRLEVLRIHTKNMK 374 (772)
Q Consensus 300 ~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~---~~ld~al~r~gRf~--~~i~i~~p~~~~r~~Il~~~~~~~~ 374 (772)
....|..+++........+++++..+| ..+++++++ ||. ..+.+..|+.+.|..||+.......
T Consensus 220 ---------~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~ 288 (445)
T PRK12422 220 ---------TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALS 288 (445)
T ss_pred ---------hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 123444555444333445555555555 356789988 885 7899999999999999998765543
Q ss_pred --cccccchhHHHHHhcC
Q 044198 375 --LAEDVNLETVARETHG 390 (772)
Q Consensus 375 --l~~~~~l~~la~~t~g 390 (772)
+.++ .++.++....+
T Consensus 289 ~~l~~e-vl~~la~~~~~ 305 (445)
T PRK12422 289 IRIEET-ALDFLIEALSS 305 (445)
T ss_pred CCCCHH-HHHHHHHhcCC
Confidence 3322 35566665554
No 230
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.21 E-value=2.3e-10 Score=129.66 Aligned_cols=164 Identities=18% Similarity=0.307 Sum_probs=108.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCC
Q 044198 224 KGILLHGPPGTGKTLLARAIANET-----GCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKR 298 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l-----~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~ 298 (772)
..++|||++|||||+|++++++.+ +..++++++.++...+...........|..-. ..+.+|+||||+++..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH
Confidence 459999999999999999999976 45788999888776654333222222333222 235799999999986432
Q ss_pred CCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCC---CCCChhhhccCCc--eeEEEeCCCCHHHHHHHHHHHhccC
Q 044198 299 EKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP---NSIDPALRRSGRF--DKEIDIGVPDEVGRLEVLRIHTKNM 373 (772)
Q Consensus 299 ~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~---~~ld~al~r~gRf--~~~i~i~~p~~~~r~~Il~~~~~~~ 373 (772)
.....|..+++.......-+||++...+ ..+++.|++ || ...+.+..|+.+.|.+||+.++...
T Consensus 394 ---------~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r 462 (617)
T PRK14086 394 ---------STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQE 462 (617)
T ss_pred ---------HHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhc
Confidence 1224566666666554444555444444 357889998 66 6677999999999999999876543
Q ss_pred --CcccccchhHHHHHhcCCchhhHHHHHH
Q 044198 374 --KLAEDVNLETVARETHGFVGADLAALCT 401 (772)
Q Consensus 374 --~l~~~~~l~~la~~t~g~~~~dl~~l~~ 401 (772)
.+.++ .++.|+....+- .+.|..++.
T Consensus 463 ~l~l~~e-Vi~yLa~r~~rn-vR~LegaL~ 490 (617)
T PRK14086 463 QLNAPPE-VLEFIASRISRN-IRELEGALI 490 (617)
T ss_pred CCCCCHH-HHHHHHHhccCC-HHHHHHHHH
Confidence 33333 366777665443 234444333
No 231
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.21 E-value=7.5e-11 Score=126.48 Aligned_cols=155 Identities=23% Similarity=0.314 Sum_probs=103.1
Q ss_pred ccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh-------CCcEE-------
Q 044198 460 RWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC-------QANFI------- 525 (772)
Q Consensus 460 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~-------~~~~i------- 525 (772)
.|..|.|++++|..|.-....| ...+++|.|+||+|||+++++++..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 3678999999998876544332 24679999999999999999999877 22221
Q ss_pred ------EE--e-------------cccchh-----cccccch--HHH--------HHHHHHHHhCCCeEEEEcCchhhhh
Q 044198 526 ------SI--K-------------GPELLT-----MWFGESE--ANV--------RDVFDKARQSAPCVLFFDELDSIAI 569 (772)
Q Consensus 526 ------~v--~-------------~~~l~~-----~~vg~se--~~i--------~~vf~~a~~~~p~ilfiDEid~l~~ 569 (772)
.. . -.++-. .++|... +.+ ..++.+|. ..+||+||++.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~---~GvL~lDEi~~L-- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARAN---RGILYIDEVNLL-- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceecc---CCEEEecChHhC--
Confidence 00 0 011100 1222210 000 01222222 259999999988
Q ss_pred ccCCCCCCCCchhHHHHHHHHHhcCCC-----------CCCcEEEEeecCCCC-CCCccccCCCCccccccCCCCCH-HH
Q 044198 570 QRGSSVGDGGGVDRIVNQLLTEMDGLS-----------AKKTVFVIGATNRPD-MIDPALLRPGRLDQLIYIPLPDE-HS 636 (772)
Q Consensus 570 ~r~~~~~~~~~~~~~~~~lL~~ld~~~-----------~~~~v~vi~aTn~~~-~ld~allrpgRf~~~i~~~~p~~-~~ 636 (772)
...+++.|+..|+.-. ...++++|+|+|..+ .+.++++. ||..++.++.|+. ++
T Consensus 144 -----------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~ee 210 (337)
T TIGR02030 144 -----------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVEL 210 (337)
T ss_pred -----------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHH
Confidence 3567788888886421 124688889988655 68889998 9999999998865 88
Q ss_pred HHHHHHHhh
Q 044198 637 RLQIFKSCL 645 (772)
Q Consensus 637 r~~Il~~~~ 645 (772)
|.+|++...
T Consensus 211 r~eIL~~~~ 219 (337)
T TIGR02030 211 RVEIVERRT 219 (337)
T ss_pred HHHHHHhhh
Confidence 999998754
No 232
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.21 E-value=1.5e-10 Score=129.69 Aligned_cols=154 Identities=21% Similarity=0.350 Sum_probs=102.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhcccchH-HHHHHHHHHHHHcCCceEEeccccccccC
Q 044198 224 KGILLHGPPGTGKTLLARAIANET-----GCYFLCINGPEIMSKMAGESE-SNLREAFNVAEKNAPSIIFIDEIDSIAPK 297 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l-----~~~~~~v~~~~~~~~~~g~~~-~~l~~~f~~a~~~~p~il~iDEid~l~~~ 297 (772)
.+++||||||+|||+|++++++++ +..++++++.++...+..... ..+.. |.......+.+|+|||++.+...
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999976 356788888877655432211 11112 22222235789999999988643
Q ss_pred CCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCC---CChhhhccCCc--eeEEEeCCCCHHHHHHHHHHHhcc
Q 044198 298 REKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNS---IDPALRRSGRF--DKEIDIGVPDEVGRLEVLRIHTKN 372 (772)
Q Consensus 298 ~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~---ld~al~r~gRf--~~~i~i~~p~~~~r~~Il~~~~~~ 372 (772)
.. ....|..+++........+++++.++|.. +++.+++ || ...+.+.+|+.+.|.+|++.....
T Consensus 210 ~~---------~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 210 TG---------VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred HH---------HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 21 12345555555554455566655566644 5667777 66 457899999999999999987653
Q ss_pred --CCcccccchhHHHHHhcC
Q 044198 373 --MKLAEDVNLETVARETHG 390 (772)
Q Consensus 373 --~~l~~~~~l~~la~~t~g 390 (772)
+.+.++ .++.++....+
T Consensus 279 ~~~~l~~e-v~~~Ia~~~~~ 297 (440)
T PRK14088 279 EHGELPEE-VLNFVAENVDD 297 (440)
T ss_pred cCCCCCHH-HHHHHHhcccc
Confidence 444444 36777776655
No 233
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.20 E-value=2.4e-10 Score=107.82 Aligned_cols=137 Identities=45% Similarity=0.718 Sum_probs=88.8
Q ss_pred CcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcccchHH
Q 044198 193 GVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKMAGESES 269 (772)
Q Consensus 193 G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~~g~~~~ 269 (772)
|.++++..+...+.. ....+++|+||||||||++++.+++.+ +.+++.+++.+...........
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh
Confidence 445555565555433 235689999999999999999999998 7888888887665432221111
Q ss_pred H---HHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccc----cCceEEEEeeCCCC--CCCh
Q 044198 270 N---LREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKS----RAHVMVIGATNRPN--SIDP 340 (772)
Q Consensus 270 ~---l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~----~~~v~vI~atn~~~--~ld~ 340 (772)
. ....+.......+.++++||++.+.+ .....+...+..... ...+.+|++++... .+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lilDe~~~~~~-----------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 69 GHFLVRLLFELAEKAKPGVLFIDEIDSLSR-----------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hhhhHhHHHHhhccCCCeEEEEeChhhhhH-----------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcCh
Confidence 1 11222333445678999999987721 112344444444332 35688888888876 6777
Q ss_pred hhhccCCceeEEEeC
Q 044198 341 ALRRSGRFDKEIDIG 355 (772)
Q Consensus 341 al~r~gRf~~~i~i~ 355 (772)
.+.+ ||+.++.++
T Consensus 138 ~~~~--r~~~~i~~~ 150 (151)
T cd00009 138 ALYD--RLDIRIVIP 150 (151)
T ss_pred hHHh--hhccEeecC
Confidence 7776 888777665
No 234
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.19 E-value=7.5e-11 Score=124.24 Aligned_cols=137 Identities=15% Similarity=0.208 Sum_probs=97.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh--cccchHHH----------HHHHHHHHHHcCCceEEec
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSK--MAGESESN----------LREAFNVAEKNAPSIIFID 289 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~--~~g~~~~~----------l~~~f~~a~~~~p~il~iD 289 (772)
..++|||.||||||||++++.+|..++.+++.+++...... ..|...-. ....+-.|. ..+.++++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEec
Confidence 36789999999999999999999999999999988654432 23321110 111222232 345789999
Q ss_pred cccccccCCCCCchhhHHHHHHHHHHHhhc------------ccccCceEEEEeeCCCC------------CCChhhhcc
Q 044198 290 EIDSIAPKREKTHGEVEKRIVSQLLTLMDG------------MKSRAHVMVIGATNRPN------------SIDPALRRS 345 (772)
Q Consensus 290 Eid~l~~~~~~~~~~~~~~v~~~L~~lld~------------~~~~~~v~vI~atn~~~------------~ld~al~r~ 345 (772)
|+|...+ .+...|..+++. +.....+.+|||+|+.+ .++++++.
T Consensus 142 Ein~a~p-----------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 142 EYDAGRP-----------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhhccCH-----------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 9997743 233555555542 12334688999999853 56889988
Q ss_pred CCceeEEEeCCCCHHHHHHHHHHHhcc
Q 044198 346 GRFDKEIDIGVPDEVGRLEVLRIHTKN 372 (772)
Q Consensus 346 gRf~~~i~i~~p~~~~r~~Il~~~~~~ 372 (772)
||...+.++.|+.+.-.+|+......
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99988999999999999999876543
No 235
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=2.8e-10 Score=129.09 Aligned_cols=188 Identities=18% Similarity=0.253 Sum_probs=125.8
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY----------- 250 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~----------- 250 (772)
+..+-+|+++.|.+..++.|+.++... ..+..+||+||+|||||++|+.+|+.+++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 345678999999999999999888641 224568999999999999999999988652
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHHH----HcCCceEEeccccccccCCCCCchhhHHHHHHHH
Q 044198 251 -------------FLCINGPEIMSKMAGESESNLREAFNVAE----KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQL 313 (772)
Q Consensus 251 -------------~~~v~~~~~~~~~~g~~~~~l~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 313 (772)
++.+++.+ ......++.+.+.+. .....|++|||+|.+.. ...+.|
T Consensus 77 ~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~-----------~a~naL 139 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG-----------HSFNAL 139 (509)
T ss_pred HHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-----------HHHHHH
Confidence 23333321 112334555554432 23345999999998853 224677
Q ss_pred HHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCc
Q 044198 314 LTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFV 392 (772)
Q Consensus 314 ~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 392 (772)
+..++... ..+.+|.+|+.+..+.+.+++ |. ..++|..++..+....++..+....+. ++..+..+++.+.| +
T Consensus 140 Lk~LEepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-s 213 (509)
T PRK14958 140 LKTLEEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-S 213 (509)
T ss_pred HHHHhccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 77777643 346677777888888888887 66 347788888887777666555433322 22346667777654 4
Q ss_pred hhhHHHHHHHHH
Q 044198 393 GADLAALCTEGA 404 (772)
Q Consensus 393 ~~dl~~l~~~a~ 404 (772)
.+++..++..+.
T Consensus 214 lR~al~lLdq~i 225 (509)
T PRK14958 214 VRDALSLLDQSI 225 (509)
T ss_pred HHHHHHHHHHHH
Confidence 556666665543
No 236
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=5e-10 Score=125.16 Aligned_cols=187 Identities=22% Similarity=0.286 Sum_probs=129.1
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------------
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGC------------- 249 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~------------- 249 (772)
..+-+|+++.|++..++.|+.++... ..++++||+||+|+||||+|+.+|+.+++
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 45678999999999999998777641 23568999999999999999999997643
Q ss_pred -----------eEEEEechhhhhhcccchHHHHHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHHH
Q 044198 250 -----------YFLCINGPEIMSKMAGESESNLREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLL 314 (772)
Q Consensus 250 -----------~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~ 314 (772)
.++.+++.+ ......++.+.+.+.. ....|++|||+|.+.. ...+.|+
T Consensus 75 ~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~NaLL 137 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNALL 137 (491)
T ss_pred HHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHHHH
Confidence 123444321 1123456666655532 2345999999998842 2346777
Q ss_pred HHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCch
Q 044198 315 TLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVG 393 (772)
Q Consensus 315 ~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~ 393 (772)
..++... ..+.+|.+|+.++.+.+.+++ |+.. ++|..++.++..+.++......... ++..++.+++.+.| +.
T Consensus 138 K~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc~~-~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-sl 211 (491)
T PRK14964 138 KTLEEPA--PHVKFILATTEVKKIPVTIIS--RCQR-FDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SM 211 (491)
T ss_pred HHHhCCC--CCeEEEEEeCChHHHHHHHHH--hhee-eecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 7777643 356777778888889999988 7644 8999999999888888765543322 23346777777755 45
Q ss_pred hhHHHHHHHHH
Q 044198 394 ADLAALCTEGA 404 (772)
Q Consensus 394 ~dl~~l~~~a~ 404 (772)
+++..++..+.
T Consensus 212 R~alslLdqli 222 (491)
T PRK14964 212 RNALFLLEQAA 222 (491)
T ss_pred HHHHHHHHHHH
Confidence 56666665544
No 237
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.19 E-value=1e-09 Score=112.61 Aligned_cols=176 Identities=15% Similarity=0.285 Sum_probs=107.1
Q ss_pred CCccccc--cCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhh
Q 044198 185 DVGYEDV--GGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEI 259 (772)
Q Consensus 185 ~~~~~~i--~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~ 259 (772)
..+++++ ++-+..+..++++.. +.....+++|+||+|||||+|++++++.. +..++++++.++
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 3455553 344555666666553 12345689999999999999999999875 557788887664
Q ss_pred hhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeC-CC--C
Q 044198 260 MSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATN-RP--N 336 (772)
Q Consensus 260 ~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn-~~--~ 336 (772)
... +. ......+++|||+|.+... ....|..+++........+++.+++ ++ .
T Consensus 82 ~~~------------~~--~~~~~~~liiDdi~~l~~~-----------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~ 136 (227)
T PRK08903 82 LLA------------FD--FDPEAELYAVDDVERLDDA-----------QQIALFNLFNRVRAHGQGALLVAGPAAPLAL 136 (227)
T ss_pred HHH------------Hh--hcccCCEEEEeChhhcCch-----------HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhC
Confidence 321 11 1223568999999976321 1244566666555444443444443 33 2
Q ss_pred CCChhhhccCCc--eeEEEeCCCCHHHHHHHHHHHhcc--CCcccccchhHHHHHhcCCchhhHHHHHH
Q 044198 337 SIDPALRRSGRF--DKEIDIGVPDEVGRLEVLRIHTKN--MKLAEDVNLETVARETHGFVGADLAALCT 401 (772)
Q Consensus 337 ~ld~al~r~gRf--~~~i~i~~p~~~~r~~Il~~~~~~--~~l~~~~~l~~la~~t~g~~~~dl~~l~~ 401 (772)
.+.+.+++ || ...+++++|+.+++..+++..... +.+.++ -++.++....| ...++..+++
T Consensus 137 ~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~-al~~L~~~~~g-n~~~l~~~l~ 201 (227)
T PRK08903 137 PLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADE-VPDYLLTHFRR-DMPSLMALLD 201 (227)
T ss_pred CCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhccC-CHHHHHHHHH
Confidence 35677776 66 578999999999988888865543 333332 35556653332 2334444443
No 238
>PHA02244 ATPase-like protein
Probab=99.19 E-value=3.1e-10 Score=120.68 Aligned_cols=127 Identities=23% Similarity=0.264 Sum_probs=83.8
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecc----cchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhcc
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQANFISIKGP----ELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQR 571 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~----~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r 571 (772)
..++||+||||||||++|+++|..++.+|+.++.. ++.+ ++.........-|-+|.. ...++||||++.+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~--- 193 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK-KGGLFFIDEIDASI--- 193 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh-cCCEEEEeCcCcCC---
Confidence 45699999999999999999999999999998742 1111 111111111112223322 23699999999873
Q ss_pred CCCCCCCCchhHHHHHHHHHhcCC---------CCCCcEEEEeecCCC-----------CCCCccccCCCCccccccCCC
Q 044198 572 GSSVGDGGGVDRIVNQLLTEMDGL---------SAKKTVFVIGATNRP-----------DMIDPALLRPGRLDQLIYIPL 631 (772)
Q Consensus 572 ~~~~~~~~~~~~~~~~lL~~ld~~---------~~~~~v~vi~aTn~~-----------~~ld~allrpgRf~~~i~~~~ 631 (772)
..+...|...++.. ....++.+|+|+|.+ ..+++|++. ||- .|+|+.
T Consensus 194 ----------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dy 260 (383)
T PHA02244 194 ----------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDY 260 (383)
T ss_pred ----------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCC
Confidence 33444455555421 234678999999973 577899998 996 799999
Q ss_pred CCHHHHHHHH
Q 044198 632 PDEHSRLQIF 641 (772)
Q Consensus 632 p~~~~r~~Il 641 (772)
|+..+ ..|.
T Consensus 261 p~~~E-~~i~ 269 (383)
T PHA02244 261 DEKIE-HLIS 269 (383)
T ss_pred CcHHH-HHHh
Confidence 87433 3444
No 239
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.18 E-value=4.7e-10 Score=128.34 Aligned_cols=194 Identities=20% Similarity=0.284 Sum_probs=127.6
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEE--------E
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFL--------C 253 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~--------~ 253 (772)
+..+-+|++|.|.+..++.|+.++... ..++.+||+||+|+|||++|+.+|+.+++.-. .
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 346678999999999999999888752 23567999999999999999999998764310 0
Q ss_pred Eechhhhhh----------cccchHHHHHHHHHHHH----HcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhc
Q 044198 254 INGPEIMSK----------MAGESESNLREAFNVAE----KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDG 319 (772)
Q Consensus 254 v~~~~~~~~----------~~g~~~~~l~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~ 319 (772)
-.|..+... ........++.++..+. .....|+||||+|.+.. ...+.|+..++.
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-----------~A~NALLKtLEE 145 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-----------SAFNAMLKTLEE 145 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-----------HHHHHHHHHHHh
Confidence 001001000 01122345666665432 23346999999987632 234667777775
Q ss_pred ccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCchhhHHH
Q 044198 320 MKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVGADLAA 398 (772)
Q Consensus 320 ~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~ 398 (772)
.. ..+.+|.+|+.+..+.+.+++ |+ ..+.|..++.++....|+..+....+. ++..+..+++.+.| +.+++..
T Consensus 146 Pp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRdAln 219 (709)
T PRK08691 146 PP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRDALS 219 (709)
T ss_pred CC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHHHHH
Confidence 43 456777788888888888886 77 347888999999888888766543332 22246677776654 3456656
Q ss_pred HHHHHH
Q 044198 399 LCTEGA 404 (772)
Q Consensus 399 l~~~a~ 404 (772)
++..+.
T Consensus 220 LLDqai 225 (709)
T PRK08691 220 LLDQAI 225 (709)
T ss_pred HHHHHH
Confidence 665544
No 240
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.17 E-value=2.8e-10 Score=124.67 Aligned_cols=145 Identities=28% Similarity=0.375 Sum_probs=93.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhH----HHHhCCC-CCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hc
Q 044198 190 DVGGVRKQLGQIREVVELPLRHPQI----FKALGVK-PPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS-KM 263 (772)
Q Consensus 190 ~i~G~~~~~~~i~~~i~~~l~~~~~----~~~~~~~-~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~-~~ 263 (772)
.+.|++++++.+..++......-.. ...-++. ...++||+||||||||++|+++|+.++.+|..+++..+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 3789999999987666321111000 0000111 1357999999999999999999999999999988877642 46
Q ss_pred ccch-HHHHHHHHHH----HHHcCCceEEeccccccccCCCCCc---hhhHHHHHHHHHHHhhcccc-----------cC
Q 044198 264 AGES-ESNLREAFNV----AEKNAPSIIFIDEIDSIAPKREKTH---GEVEKRIVSQLLTLMDGMKS-----------RA 324 (772)
Q Consensus 264 ~g~~-~~~l~~~f~~----a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~L~~lld~~~~-----------~~ 324 (772)
.|.. +..+..+++. .....++|+||||+|.+.++....+ +-....+.+.|+++|+|... ..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 6653 3444554442 2334678999999999987543211 11112467778888876421 13
Q ss_pred ceEEEEeeCC
Q 044198 325 HVMVIGATNR 334 (772)
Q Consensus 325 ~v~vI~atn~ 334 (772)
+.++|.|+|-
T Consensus 238 ~~i~i~TsNi 247 (413)
T TIGR00382 238 EFIQIDTSNI 247 (413)
T ss_pred CeEEEEcCCc
Confidence 4677777776
No 241
>PRK08727 hypothetical protein; Validated
Probab=99.17 E-value=1.1e-09 Score=112.54 Aligned_cols=145 Identities=28% Similarity=0.399 Sum_probs=94.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCC
Q 044198 223 PKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKRE 299 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~ 299 (772)
...++|+||+|||||+|+++++..+ +....+++..+.. ..+..+++... ...+|+|||++.+.....
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l~--~~dlLiIDDi~~l~~~~~ 110 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEALE--GRSLVALDGLESIAGQRE 110 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHHh--cCCEEEEeCcccccCChH
Confidence 3569999999999999999998765 4455666644432 22333444332 346999999998764321
Q ss_pred CCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCC---ChhhhccCCc--eeEEEeCCCCHHHHHHHHHHHhc--c
Q 044198 300 KTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSI---DPALRRSGRF--DKEIDIGVPDEVGRLEVLRIHTK--N 372 (772)
Q Consensus 300 ~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~l---d~al~r~gRf--~~~i~i~~p~~~~r~~Il~~~~~--~ 372 (772)
....+..+++....+..-+++.+..+|..+ ++++++ || ...+.++.|+.+++.+|++.+.. +
T Consensus 111 ---------~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~ 179 (233)
T PRK08727 111 ---------DEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRG 179 (233)
T ss_pred ---------HHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcC
Confidence 123455666655443333444444456544 789988 76 56789999999999999997654 3
Q ss_pred CCcccccchhHHHHHhc
Q 044198 373 MKLAEDVNLETVARETH 389 (772)
Q Consensus 373 ~~l~~~~~l~~la~~t~ 389 (772)
+.+.++ .+..++..+.
T Consensus 180 l~l~~e-~~~~La~~~~ 195 (233)
T PRK08727 180 LALDEA-AIDWLLTHGE 195 (233)
T ss_pred CCCCHH-HHHHHHHhCC
Confidence 444333 4667777655
No 242
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=9.5e-10 Score=124.51 Aligned_cols=175 Identities=23% Similarity=0.314 Sum_probs=118.8
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY----------- 250 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~----------- 250 (772)
++.+.+|+++.|++..++.|+.++... ..++.+||+|||||||||+|+++|+.+.+.
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 456778999999999999998888651 224457999999999999999999988531
Q ss_pred ------------EEEEechhhhhhcccchHHHHHHHHHHHH----HcCCceEEeccccccccCCCCCchhhHHHHHHHHH
Q 044198 251 ------------FLCINGPEIMSKMAGESESNLREAFNVAE----KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLL 314 (772)
Q Consensus 251 ------------~~~v~~~~~~~~~~g~~~~~l~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~ 314 (772)
++.+++.+ ......++.+...+. ...+.+++|||+|.+. ....+.|+
T Consensus 75 sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naLL 137 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNALL 137 (504)
T ss_pred hhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHHH
Confidence 23333321 112233444433332 2345699999998663 12345666
Q ss_pred HHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcC
Q 044198 315 TLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHG 390 (772)
Q Consensus 315 ~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g 390 (772)
..++.. ...+++|.+|+.+..+.+.+++ |+. .++|..|+.++....++..+....+. ++..+..++..+.|
T Consensus 138 k~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 138 KTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred HHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 666543 2356777788888899999987 665 58999999999988888766543332 22246667766654
No 243
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.5e-09 Score=118.04 Aligned_cols=162 Identities=23% Similarity=0.379 Sum_probs=114.2
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----EEEEechhhhhhc
Q 044198 189 EDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY-----FLCINGPEIMSKM 263 (772)
Q Consensus 189 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~-----~~~v~~~~~~~~~ 263 (772)
+.+.+-++|++++...+...+.. ..|.+++++|+||||||++++.+++++... ++++||....+.+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 44889999999998887654432 345569999999999999999999988433 7999995443211
Q ss_pred ---------------ccc-hHHHHHHHHHHHHH-cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCce
Q 044198 264 ---------------AGE-SESNLREAFNVAEK-NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHV 326 (772)
Q Consensus 264 ---------------~g~-~~~~l~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v 326 (772)
.|. .......+++.... ....|+++||+|.|..+.+ .++-.|....+.. ..++
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v 157 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKV 157 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeE
Confidence 111 12233444444444 3456889999999986543 3344444444433 5678
Q ss_pred EEEEeeCCC---CCCChhhhccCCc-eeEEEeCCCCHHHHHHHHHHHhc
Q 044198 327 MVIGATNRP---NSIDPALRRSGRF-DKEIDIGVPDEVGRLEVLRIHTK 371 (772)
Q Consensus 327 ~vI~atn~~---~~ld~al~r~gRf-~~~i~i~~p~~~~r~~Il~~~~~ 371 (772)
.+|+.+|.. +.+||.+.+ +| ..+|.|++++.++..+||+....
T Consensus 158 ~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 158 SIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred EEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 899999887 578999988 44 34489999999999999987764
No 244
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=6e-10 Score=117.50 Aligned_cols=100 Identities=27% Similarity=0.454 Sum_probs=77.3
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch-hcccccc-hHHHHHHHHHHH----hCCCeEEEEcCchhhhh
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL-TMWFGES-EANVRDVFDKAR----QSAPCVLFFDELDSIAI 569 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~-~~~vg~s-e~~i~~vf~~a~----~~~p~ilfiDEid~l~~ 569 (772)
..++||.||+|+|||.||+.+|+.++.||...++..|. ..|||+. |.-|..+++.|. +....|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 45799999999999999999999999999999998875 4599986 556677776652 22346999999999985
Q ss_pred ccCCCCCCCC-chhHHHHHHHHHhcCC
Q 044198 570 QRGSSVGDGG-GVDRIVNQLLTEMDGL 595 (772)
Q Consensus 570 ~r~~~~~~~~-~~~~~~~~lL~~ld~~ 595 (772)
+..+-+...+ ..+-+...||..++|-
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred cCccccccccccchhHHHHHHHHhccc
Confidence 5433222212 2677899999999974
No 245
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.16 E-value=2.2e-11 Score=119.66 Aligned_cols=143 Identities=23% Similarity=0.356 Sum_probs=69.2
Q ss_pred ccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCC-----------------
Q 044198 460 RWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQA----------------- 522 (772)
Q Consensus 460 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~----------------- 522 (772)
+|+||.|++.+|+.+.-+... ..++||+||||||||++|+.+...+-.
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 368999999999998765432 468999999999999999999977611
Q ss_pred -----------cEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHH
Q 044198 523 -----------NFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTE 591 (772)
Q Consensus 523 -----------~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ 591 (772)
||.....+--....+|......-..+..|.. .|||+||+-.+ .+++++.|++-
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~---GVLflDE~~ef-------------~~~vld~Lr~p 129 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHR---GVLFLDELNEF-------------DRSVLDALRQP 129 (206)
T ss_dssp -S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS--------------HHHHHHHHHH
T ss_pred CCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcC---CEEEechhhhc-------------CHHHHHHHHHH
Confidence 1111111110011111111000011222322 49999999665 57899999999
Q ss_pred hcCCC-----------CCCcEEEEeecCC-----------------------CCCCCccccCCCCccccccCCCCCHH
Q 044198 592 MDGLS-----------AKKTVFVIGATNR-----------------------PDMIDPALLRPGRLDQLIYIPLPDEH 635 (772)
Q Consensus 592 ld~~~-----------~~~~v~vi~aTn~-----------------------~~~ld~allrpgRf~~~i~~~~p~~~ 635 (772)
|+... -..++++|+|+|. ...|...++- |||..+.++..+.+
T Consensus 130 le~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 130 LEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HHHSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred HHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 97532 1246899999983 1245556776 88888888876654
No 246
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=5.5e-10 Score=127.26 Aligned_cols=176 Identities=18% Similarity=0.253 Sum_probs=118.5
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY----------- 250 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~----------- 250 (772)
+..+.+|++|.|.+..++.|+.++... ..+..+||+||+|||||++|+.+|+.+.+.
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 345678999999999999998888641 124579999999999999999999988642
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHH----HHHcCCceEEeccccccccCCCCCchhhHHHHHHHH
Q 044198 251 -------------FLCINGPEIMSKMAGESESNLREAFNV----AEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQL 313 (772)
Q Consensus 251 -------------~~~v~~~~~~~~~~g~~~~~l~~~f~~----a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 313 (772)
++.+++..- ..-..++.+.+. +......|+||||+|.+.. ...+.|
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-----------~a~naL 139 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-----------EAFNAL 139 (624)
T ss_pred HHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-----------HHHHHH
Confidence 233333110 011223332222 2223456999999998842 234667
Q ss_pred HHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCc-ccccchhHHHHHhcCC
Q 044198 314 LTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKL-AEDVNLETVARETHGF 391 (772)
Q Consensus 314 ~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l-~~~~~l~~la~~t~g~ 391 (772)
+..++.. ...+++|.+|+.+..+.+.+++ |+. .++|..++.++...+|+..+....+ .+...++.++..+.|-
T Consensus 140 Lk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~Gd 213 (624)
T PRK14959 140 LKTLEEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGS 213 (624)
T ss_pred HHHhhcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 7777653 2457788888888888888887 764 5889999999998888866544332 1222466667666543
No 247
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=2e-09 Score=117.28 Aligned_cols=184 Identities=17% Similarity=0.157 Sum_probs=123.2
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcE-------------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANF------------- 524 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~------------- 524 (772)
...+++|.|++.+++.|...+.. + +.+..+||+||+|+||+++|.++|+.+-+.-
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS-----------G-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 45688999999999999877654 1 3355699999999999999999998763210
Q ss_pred EE-------------Eecccchhccc---cc--------chHHHHHHHHHH----HhCCCeEEEEcCchhhhhccCCCCC
Q 044198 525 IS-------------IKGPELLTMWF---GE--------SEANVRDVFDKA----RQSAPCVLFFDELDSIAIQRGSSVG 576 (772)
Q Consensus 525 i~-------------v~~~~l~~~~v---g~--------se~~i~~vf~~a----~~~~p~ilfiDEid~l~~~r~~~~~ 576 (772)
+. -+.+|+.--.. +. .-..||++-+.+ ....+.|++|||+|.+
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m--------- 153 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM--------- 153 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc---------
Confidence 00 01112110000 00 123455555443 3346789999999988
Q ss_pred CCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccH
Q 044198 577 DGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDL 656 (772)
Q Consensus 577 ~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~ 656 (772)
.....|.||..++.. ..+.++|.+|+.++.+.+.+.+ |+. .+.|++|+.++-.+++...... ..+..+
T Consensus 154 ----~~~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~---~~~~~~ 221 (365)
T PRK07471 154 ----NANAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPD---LPDDPR 221 (365)
T ss_pred ----CHHHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhccc---CCHHHH
Confidence 356788999999853 4466778889999988888876 886 8999999999998888875421 122223
Q ss_pred HHHHHHcCCCCHHHHHHHH
Q 044198 657 KAIAKYTHGFSGADITEIC 675 (772)
Q Consensus 657 ~~la~~~~g~sg~di~~l~ 675 (772)
..+++.+.|-- ....+++
T Consensus 222 ~~l~~~s~Gsp-~~Al~ll 239 (365)
T PRK07471 222 AALAALAEGSV-GRALRLA 239 (365)
T ss_pred HHHHHHcCCCH-HHHHHHh
Confidence 56777776633 3334444
No 248
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.15 E-value=3.7e-10 Score=132.44 Aligned_cols=152 Identities=28% Similarity=0.397 Sum_probs=104.9
Q ss_pred CCCCCccccccCcHHHHH---HHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechh
Q 044198 182 RLDDVGYEDVGGVRKQLG---QIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPE 258 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~---~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~ 258 (772)
+..+-+++++.|.+..+. .+++++.. ....+++|+|||||||||+|+++++.++.+++.+++..
T Consensus 21 k~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~ 87 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL 87 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh
Confidence 345677889999998875 45555543 22357999999999999999999999998888888753
Q ss_pred hhhhcccchHHHHHHHHHHHH-----HcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeC
Q 044198 259 IMSKMAGESESNLREAFNVAE-----KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATN 333 (772)
Q Consensus 259 ~~~~~~g~~~~~l~~~f~~a~-----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn 333 (772)
.. ...++..+..+. .....++||||+|.+... ..+.|+..++ ...+++|++|+
T Consensus 88 ~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-----------qQdaLL~~lE----~g~IiLI~aTT 145 (725)
T PRK13341 88 AG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA-----------QQDALLPWVE----NGTITLIGATT 145 (725)
T ss_pred hh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-----------HHHHHHHHhc----CceEEEEEecC
Confidence 11 112333333321 124569999999987421 1244555554 24577777664
Q ss_pred C--CCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhc
Q 044198 334 R--PNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTK 371 (772)
Q Consensus 334 ~--~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~ 371 (772)
. ...+++++++ |. ..+.+++++.+++..+++..+.
T Consensus 146 enp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 146 ENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred CChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHH
Confidence 3 3568889987 54 3588999999999999987664
No 249
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.2e-09 Score=125.12 Aligned_cols=187 Identities=18% Similarity=0.240 Sum_probs=122.2
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY----------- 250 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~----------- 250 (772)
++.+-+|++|.|.+..++.|+.++... ..++.+||+||+||||||+|+++|+.+++.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 345678999999999999999888641 224458999999999999999999987642
Q ss_pred ---------------EEEEechhhhhhcccchHHHHHHHHHHH----HHcCCceEEeccccccccCCCCCchhhHHHHHH
Q 044198 251 ---------------FLCINGPEIMSKMAGESESNLREAFNVA----EKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVS 311 (772)
Q Consensus 251 ---------------~~~v~~~~~~~~~~g~~~~~l~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 311 (772)
++.+++... ..-..++.+...+ ......|++|||+|.+.. ...+
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-----------~A~N 136 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-----------AGFN 136 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-----------HHHH
Confidence 122222110 0123334333322 223345999999998843 2356
Q ss_pred HHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcC
Q 044198 312 QLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHG 390 (772)
Q Consensus 312 ~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g 390 (772)
.|+..|+.. ...+++|.+|+.++.+.+.+++ |. ..++|..++.++..+.++..+....+. ++..+..++....
T Consensus 137 ALLK~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~- 210 (584)
T PRK14952 137 ALLKIVEEP--PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG- 210 (584)
T ss_pred HHHHHHhcC--CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-
Confidence 778877753 3467777788888899999988 64 458999999988888887766543322 2223444555443
Q ss_pred CchhhHHHHHHHH
Q 044198 391 FVGADLAALCTEG 403 (772)
Q Consensus 391 ~~~~dl~~l~~~a 403 (772)
-..++...++...
T Consensus 211 GdlR~aln~Ldql 223 (584)
T PRK14952 211 GSPRDTLSVLDQL 223 (584)
T ss_pred CCHHHHHHHHHHH
Confidence 3344444555443
No 250
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.15 E-value=4.4e-10 Score=111.81 Aligned_cols=143 Identities=21% Similarity=0.308 Sum_probs=99.7
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhCCc------------------------EEEEecccchhcccccchHHHHHHHHH
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQAN------------------------FISIKGPELLTMWFGESEANVRDVFDK 550 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~~~------------------------~i~v~~~~l~~~~vg~se~~i~~vf~~ 550 (772)
.+..+||+||+|+|||++|++++..+... +..+.... .. -+-..++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHHH
Confidence 34569999999999999999999887431 22211110 00 123456666666
Q ss_pred HHh----CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCcccc
Q 044198 551 ARQ----SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQL 626 (772)
Q Consensus 551 a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~ 626 (772)
+.. ....|++|||+|.+. ....+.||..|+... ...++|++||.++.+.+++.+ |+. .
T Consensus 88 ~~~~~~~~~~kviiide~~~l~-------------~~~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~i~s--r~~-~ 149 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMN-------------EAAANALLKTLEEPP--PNTLFILITPSPEKLLPTIRS--RCQ-V 149 (188)
T ss_pred HccCcccCCeEEEEEechhhhC-------------HHHHHHHHHHhcCCC--CCeEEEEEECChHhChHHHHh--hcE-E
Confidence 554 335799999999983 345778999998733 355666667777999999987 885 8
Q ss_pred ccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCC
Q 044198 627 IYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHG 665 (772)
Q Consensus 627 i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g 665 (772)
+.|++|+.++..++++.. +++ +..++.+++.+.|
T Consensus 150 ~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 150 LPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred eeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 999999999999888876 232 3446666665554
No 251
>PRK05642 DNA replication initiation factor; Validated
Probab=99.15 E-value=1.3e-09 Score=112.07 Aligned_cols=146 Identities=18% Similarity=0.293 Sum_probs=99.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCC
Q 044198 223 PKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKRE 299 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~ 299 (772)
..+++|+||+|||||+|++++++++ +..+++++..++.... ..+.+.... ..+|+|||++.+..+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCCh-
Confidence 3679999999999999999999765 5667888877765421 122222322 2489999999875431
Q ss_pred CCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCC---CCChhhhccCCc--eeEEEeCCCCHHHHHHHHHHHhcc--
Q 044198 300 KTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPN---SIDPALRRSGRF--DKEIDIGVPDEVGRLEVLRIHTKN-- 372 (772)
Q Consensus 300 ~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~---~ld~al~r~gRf--~~~i~i~~p~~~~r~~Il~~~~~~-- 372 (772)
.....|.++++........++++++.+|. ...|.+++ || ...+.+..|+.+++.++++.....
T Consensus 114 --------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 114 --------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred --------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 22355777777766666677777776664 33688888 77 467888999999999999855433
Q ss_pred CCcccccchhHHHHHhcC
Q 044198 373 MKLAEDVNLETVARETHG 390 (772)
Q Consensus 373 ~~l~~~~~l~~la~~t~g 390 (772)
+.+.++ -++.+++...+
T Consensus 184 ~~l~~e-v~~~L~~~~~~ 200 (234)
T PRK05642 184 LHLTDE-VGHFILTRGTR 200 (234)
T ss_pred CCCCHH-HHHHHHHhcCC
Confidence 333332 35555555443
No 252
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14 E-value=9.8e-10 Score=130.44 Aligned_cols=186 Identities=20% Similarity=0.245 Sum_probs=122.6
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY----------- 250 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~----------- 250 (772)
++...+|++|.|.+..++.|+.++... ..++.+||+||+|||||++|+.||+.+.+.
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 456778999999999999998888641 224468999999999999999999998642
Q ss_pred ---------------EEEEechhhhhhcccchHHHHHHHHH----HHHHcCCceEEeccccccccCCCCCchhhHHHHHH
Q 044198 251 ---------------FLCINGPEIMSKMAGESESNLREAFN----VAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVS 311 (772)
Q Consensus 251 ---------------~~~v~~~~~~~~~~g~~~~~l~~~f~----~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 311 (772)
++.+++... .....++.+.+ ........|+||||+|.|.. ...+
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~N 138 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGFN 138 (824)
T ss_pred HHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHHH
Confidence 122222110 01223333322 22334456999999998853 2346
Q ss_pred HHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcC
Q 044198 312 QLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHG 390 (772)
Q Consensus 312 ~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g 390 (772)
.|++.|+... ..+++|.+|+.++.|-+.+++ |. ..++|..++.++..++|+..++...+. ++..+..+++...|
T Consensus 139 aLLK~LEEpP--~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG 213 (824)
T PRK07764 139 ALLKIVEEPP--EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG 213 (824)
T ss_pred HHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 7888887643 356777777888888888988 65 358899999998888888766443332 22235556666554
Q ss_pred CchhhHHHHHHH
Q 044198 391 FVGADLAALCTE 402 (772)
Q Consensus 391 ~~~~dl~~l~~~ 402 (772)
...++..++..
T Consensus 214 -dlR~Al~eLEK 224 (824)
T PRK07764 214 -SVRDSLSVLDQ 224 (824)
T ss_pred -CHHHHHHHHHH
Confidence 33444444433
No 253
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=1.7e-09 Score=122.61 Aligned_cols=187 Identities=19% Similarity=0.291 Sum_probs=121.4
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY----------- 250 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~----------- 250 (772)
+..+-+|+++.|.+..++.|...+... ..+..+||+||+|+|||++|+.+|+.+.+.
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 345678999999999999998888641 224568999999999999999999987641
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHHH----HcCCceEEeccccccccCCCCCchhhHHHHHHHH
Q 044198 251 -------------FLCINGPEIMSKMAGESESNLREAFNVAE----KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQL 313 (772)
Q Consensus 251 -------------~~~v~~~~~~~~~~g~~~~~l~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 313 (772)
++.+++..- .....++.+.+.+. .....|++|||+|.+.. ...+.|
T Consensus 77 ~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-----------~a~naL 139 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-----------QSFNAL 139 (546)
T ss_pred HHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-----------HHHHHH
Confidence 222222110 11223444444333 23456999999988742 234677
Q ss_pred HHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCc
Q 044198 314 LTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFV 392 (772)
Q Consensus 314 ~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 392 (772)
+..++.. ...+.+|.+|+.+..+.+.+++ |. ..++|..++.++....++..++...+. +...+..++..+.| .
T Consensus 140 LK~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-d 213 (546)
T PRK14957 140 LKTLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-S 213 (546)
T ss_pred HHHHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 7888753 2456667777778888888887 66 558999999998887777655443322 22245666666643 3
Q ss_pred hhhHHHHHHHH
Q 044198 393 GADLAALCTEG 403 (772)
Q Consensus 393 ~~dl~~l~~~a 403 (772)
.+++..++..+
T Consensus 214 lR~alnlLek~ 224 (546)
T PRK14957 214 LRDALSLLDQA 224 (546)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 254
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.14 E-value=2.8e-10 Score=133.28 Aligned_cols=155 Identities=23% Similarity=0.334 Sum_probs=106.8
Q ss_pred ccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh-------------------
Q 044198 460 RWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC------------------- 520 (772)
Q Consensus 460 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~------------------- 520 (772)
.|.+|.|++.++..|.-....+ ...++||.|+||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 3678999999998876544331 23569999999999999999999887
Q ss_pred ----------------CCcEEEEecccchhcccccc--hHHH--------HHHHHHHHhCCCeEEEEcCchhhhhccCCC
Q 044198 521 ----------------QANFISIKGPELLTMWFGES--EANV--------RDVFDKARQSAPCVLFFDELDSIAIQRGSS 574 (772)
Q Consensus 521 ----------------~~~~i~v~~~~l~~~~vg~s--e~~i--------~~vf~~a~~~~p~ilfiDEid~l~~~r~~~ 574 (772)
..+|+.+...-.....+|.. ++.+ ..++..| .-.+||||||+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLL------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhC-------
Confidence 24666655443333344431 1111 0111112 2249999999998
Q ss_pred CCCCCchhHHHHHHHHHhcCCC-----------CCCcEEEEeecCCC-CCCCccccCCCCccccccCCCC-CHHHHHHHH
Q 044198 575 VGDGGGVDRIVNQLLTEMDGLS-----------AKKTVFVIGATNRP-DMIDPALLRPGRLDQLIYIPLP-DEHSRLQIF 641 (772)
Q Consensus 575 ~~~~~~~~~~~~~lL~~ld~~~-----------~~~~v~vi~aTn~~-~~ld~allrpgRf~~~i~~~~p-~~~~r~~Il 641 (772)
...+++.||..|+... ...++.+|+|+|.. ..+.++|+. ||+.+|.++.| +.+++.+|+
T Consensus 139 ------~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il 210 (633)
T TIGR02442 139 ------DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEII 210 (633)
T ss_pred ------CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHH
Confidence 3667888999987431 12468999999954 357888988 99999999876 467888888
Q ss_pred HHhh
Q 044198 642 KSCL 645 (772)
Q Consensus 642 ~~~~ 645 (772)
+..+
T Consensus 211 ~~~~ 214 (633)
T TIGR02442 211 RRRL 214 (633)
T ss_pred HHHH
Confidence 7644
No 255
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.13 E-value=7.8e-10 Score=112.43 Aligned_cols=178 Identities=21% Similarity=0.264 Sum_probs=115.7
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------EEEEe
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY------FLCIN 255 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~------~~~v~ 255 (772)
+..+-+++++.|++..++.|+..+.- ....++|+|||||||||+.|+++|.++..+ +...|
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln 95 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN 95 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc
Confidence 45677899999999999999877754 113479999999999999999999998652 23344
Q ss_pred chhhhhhcccchHHHHHHHHHHHHH---------cCC-ceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCc
Q 044198 256 GPEIMSKMAGESESNLREAFNVAEK---------NAP-SIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAH 325 (772)
Q Consensus 256 ~~~~~~~~~g~~~~~l~~~f~~a~~---------~~p-~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~ 325 (772)
.++..+..+. ..++. -|..... ..| -|++|||.|.+.. ....+|...|+.... .
T Consensus 96 aSderGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts-----------daq~aLrr~mE~~s~--~ 159 (346)
T KOG0989|consen 96 ASDERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS-----------DAQAALRRTMEDFSR--T 159 (346)
T ss_pred ccccccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhH-----------HHHHHHHHHHhcccc--c
Confidence 4443322211 11111 1111111 112 5999999998853 334778888887544 4
Q ss_pred eEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCccc-ccchhHHHHHhcCC
Q 044198 326 VMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAE-DVNLETVARETHGF 391 (772)
Q Consensus 326 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~-~~~l~~la~~t~g~ 391 (772)
+.+|..||..+.|...+.+ |... +.|+....+.....|+.....-.+.- +..+..++..++|-
T Consensus 160 trFiLIcnylsrii~pi~S--RC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 160 TRFILICNYLSRIIRPLVS--RCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGD 223 (346)
T ss_pred eEEEEEcCChhhCChHHHh--hHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Confidence 6777789999999888887 7665 56666666666666665554333321 22366677666553
No 256
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.13 E-value=3.4e-10 Score=122.79 Aligned_cols=132 Identities=29% Similarity=0.420 Sum_probs=94.2
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhc--ccccchHHHH------------HHHHHHHhCCCeEEE
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM--WFGESEANVR------------DVFDKARQSAPCVLF 560 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~--~vg~se~~i~------------~vf~~a~~~~p~ilf 560 (772)
..+++||.||||||||++|+++|..++.+|+.+.+...+.. .+|...-... -+|...+ +++|
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill 117 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILL 117 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEE
Confidence 35779999999999999999999999999999988754322 2222211111 1121111 3999
Q ss_pred EcCchhhhhccCCCCCCCCchhHHHHHHHHHhcC----------CCCCCcEEEEeecC-----CCCCCCccccCCCCccc
Q 044198 561 FDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDG----------LSAKKTVFVIGATN-----RPDMIDPALLRPGRLDQ 625 (772)
Q Consensus 561 iDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~----------~~~~~~v~vi~aTn-----~~~~ld~allrpgRf~~ 625 (772)
+|||+.. ...+.+.||..|+. +.-...++||+|+| .-..|.+|+++ ||..
T Consensus 118 ~DEInra-------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~ 182 (329)
T COG0714 118 LDEINRA-------------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLL 182 (329)
T ss_pred EeccccC-------------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEE
Confidence 9999775 36688889999987 22346788999999 34577889998 9988
Q ss_pred cccCCCC-CHHHHHHHHHHhh
Q 044198 626 LIYIPLP-DEHSRLQIFKSCL 645 (772)
Q Consensus 626 ~i~~~~p-~~~~r~~Il~~~~ 645 (772)
.++++.| +.++...+.....
T Consensus 183 ~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 183 RIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred EEecCCCCchHHHHHHHHhCc
Confidence 9999999 4555555554444
No 257
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=8.5e-10 Score=118.84 Aligned_cols=176 Identities=16% Similarity=0.265 Sum_probs=118.9
Q ss_pred ccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhc--cc
Q 044198 460 RWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM--WF 537 (772)
Q Consensus 460 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~--~v 537 (772)
+|+++.|++.+++.+...+.. -+.++.+||+||+|+|||++|+++|..+-+....-..+|+..- +-
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 588999999999998877642 1234568999999999999999999876331111111121100 01
Q ss_pred cc--chHHHHHHHHHHH----hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCC
Q 044198 538 GE--SEANVRDVFDKAR----QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPD 611 (772)
Q Consensus 538 g~--se~~i~~vf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 611 (772)
|. +-..++++-+.+. .....|++||++|.+ +....|.||..|+. +..++++|.+|+.++
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-------------~~~a~naLLK~LEe--pp~~t~~il~~~~~~ 134 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-------------TEQAQNAFLKTIEE--PPKGVFIILLCENLE 134 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhc-------------CHHHHHHHHHHhcC--CCCCeEEEEEeCChH
Confidence 11 2234666665443 334579999999888 35568899999996 345566666667789
Q ss_pred CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCH
Q 044198 612 MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSG 668 (772)
Q Consensus 612 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg 668 (772)
.+-|.+.+ |+. +++|++|+.++....++..... . ++..+..++..+.|-.+
T Consensus 135 ~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 135 QILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDGIPG 185 (313)
T ss_pred hCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCCCHH
Confidence 99898887 886 9999999999888887765432 1 23345567777666443
No 258
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.13 E-value=3.3e-09 Score=104.24 Aligned_cols=193 Identities=23% Similarity=0.338 Sum_probs=135.2
Q ss_pred ccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEeccc
Q 044198 455 EVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPE 531 (772)
Q Consensus 455 ~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~ 531 (772)
..+.+...+|.|.+.+|+.|.+....++. | .|..++||+|.-|||||+|+||+-++. +..++.|+-.+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAE--------G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHc--------C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 34558899999999999998876554322 2 356789999999999999999999887 45678888887
Q ss_pred chhcccccchHHHHHHHHHHHhCC-CeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC--CCCcEEEEeecC
Q 044198 532 LLTMWFGESEANVRDVFDKARQSA-PCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS--AKKTVFVIGATN 608 (772)
Q Consensus 532 l~~~~vg~se~~i~~vf~~a~~~~-p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~--~~~~v~vi~aTn 608 (772)
+.. +-.+++..+..+ .-|||+|+.-. +..+.-...|-..|||-- ...+|++-+|+|
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF------------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSF------------EEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCC------------CCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 632 344454444332 35999999621 113444666778888863 357899999999
Q ss_pred CCCCCCccc---------cC-----------CCCccccccCCCCCHHHHHHHHHHhhccCCCCCc-ccHHH----HHHHc
Q 044198 609 RPDMIDPAL---------LR-----------PGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKD-IDLKA----IAKYT 663 (772)
Q Consensus 609 ~~~~ld~al---------lr-----------pgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~~~~~----la~~~ 663 (772)
|...|.+-+ +. ..||...+.|+++++++-.+|...++++..++-+ ..++. -|..-
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~r 262 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTR 262 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 976665211 11 2399999999999999999999999999887742 22221 22333
Q ss_pred CCCCHHHHHHHHHH
Q 044198 664 HGFSGADITEICQR 677 (772)
Q Consensus 664 ~g~sg~di~~l~~~ 677 (772)
.|-||+--.+.++.
T Consensus 263 g~RSGR~A~QF~~~ 276 (287)
T COG2607 263 GGRSGRVAWQFIRD 276 (287)
T ss_pred CCCccHhHHHHHHH
Confidence 56677655554443
No 259
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=1.2e-09 Score=118.44 Aligned_cols=190 Identities=17% Similarity=0.165 Sum_probs=123.6
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCC-------cEEEE---
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQA-------NFISI--- 527 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~-------~~i~v--- 527 (772)
...+.++.|++.+++.|...+.. | +.+..+||+||+|+|||++|+.+|+.+.+ +....
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~-----------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE-----------G-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc-----------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 34678899999999999877653 1 23456999999999999999999988744 11000
Q ss_pred ------------ecccch---hcc-c--c-----cchHHHHHHHHHH----HhCCCeEEEEcCchhhhhccCCCCCCCCc
Q 044198 528 ------------KGPELL---TMW-F--G-----ESEANVRDVFDKA----RQSAPCVLFFDELDSIAIQRGSSVGDGGG 580 (772)
Q Consensus 528 ------------~~~~l~---~~~-v--g-----~se~~i~~vf~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~ 580 (772)
+.+++. ..+ . | -+-..+|.+-+.. ......|++|||+|.+
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l------------- 153 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM------------- 153 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-------------
Confidence 011211 000 0 0 0113344443332 2334579999999998
Q ss_pred hhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHH
Q 044198 581 VDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIA 660 (772)
Q Consensus 581 ~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la 660 (772)
.....|.||..|+.. ..+.++|..|+.|+.+.|.+.+ |+ ..+.+++|+.++..++++.......+ ++..+..++
T Consensus 154 ~~~aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~-~~~~~~~i~ 227 (351)
T PRK09112 154 NRNAANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGS-DGEITEALL 227 (351)
T ss_pred CHHHHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCC-CHHHHHHHH
Confidence 245678899999863 3355556667778888888876 99 59999999999999999874322221 123356677
Q ss_pred HHcCCCCHHHHHHHHHHHH
Q 044198 661 KYTHGFSGADITEICQRAC 679 (772)
Q Consensus 661 ~~~~g~sg~di~~l~~~a~ 679 (772)
+.+.| +.+...++.....
T Consensus 228 ~~s~G-~pr~Al~ll~~~~ 245 (351)
T PRK09112 228 QRSKG-SVRKALLLLNYGG 245 (351)
T ss_pred HHcCC-CHHHHHHHHhcCc
Confidence 77665 4444445554443
No 260
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.12 E-value=1.4e-09 Score=125.11 Aligned_cols=186 Identities=23% Similarity=0.339 Sum_probs=126.9
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY------------ 250 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~------------ 250 (772)
..+-+|+++.|.+..++.|+..+... ..++.+||+||+|||||++|+.+|+.+++.
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 45678999999999999998888651 234569999999999999999999987532
Q ss_pred ------------EEEEechhhhhhcccchHHHHHHHHHHHH----HcCCceEEeccccccccCCCCCchhhHHHHHHHHH
Q 044198 251 ------------FLCINGPEIMSKMAGESESNLREAFNVAE----KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLL 314 (772)
Q Consensus 251 ------------~~~v~~~~~~~~~~g~~~~~l~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~ 314 (772)
++.+++. .......++.+...+. .....|++|||+|.+.. ...+.|+
T Consensus 78 ~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~naLL 140 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNALL 140 (559)
T ss_pred HHHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHHH
Confidence 2222221 1122345666655543 23346999999998842 2346777
Q ss_pred HHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCch
Q 044198 315 TLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVG 393 (772)
Q Consensus 315 ~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~ 393 (772)
..++.. ...+++|.+|+.++.+.+.+++ |+. .++|..|+..+....++..++...+. ++..+..++..+.| ..
T Consensus 141 KtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~ 214 (559)
T PRK05563 141 KTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GM 214 (559)
T ss_pred HHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 777653 3456777777778899999987 775 48899999999888888766543332 22346667776655 44
Q ss_pred hhHHHHHHHH
Q 044198 394 ADLAALCTEG 403 (772)
Q Consensus 394 ~dl~~l~~~a 403 (772)
++...++..+
T Consensus 215 R~al~~Ldq~ 224 (559)
T PRK05563 215 RDALSILDQA 224 (559)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 261
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.12 E-value=1.6e-09 Score=125.21 Aligned_cols=191 Identities=20% Similarity=0.318 Sum_probs=125.8
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEE---Eechh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLC---INGPE 258 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~---v~~~~ 258 (772)
+..+-+|++|.|.+..++.|+..+... ..++.+||+||+|+|||++|+++|+.+.+.-.. -.|..
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 346778999999999999999888652 224568999999999999999999988653110 01110
Q ss_pred h---hhh------ccc---chHHHHHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccc
Q 044198 259 I---MSK------MAG---ESESNLREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKS 322 (772)
Q Consensus 259 ~---~~~------~~g---~~~~~l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~ 322 (772)
. .+. ..+ .....++.+.+.+.. ....|++|||+|.+.. ...+.|+..++..
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtLEEP-- 145 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTLEEP-- 145 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHhhcC--
Confidence 0 000 000 123446666665543 3346999999998752 2356777777763
Q ss_pred cCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCchhhHHHHHH
Q 044198 323 RAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVGADLAALCT 401 (772)
Q Consensus 323 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~ 401 (772)
...+++|.+|+.++.|.+.+++ |+. .++|..++.++....|+..+....+. ++..+..++..+.|-. +++..++.
T Consensus 146 P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gsl-R~AlslLe 221 (725)
T PRK07133 146 PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSL-RDALSIAE 221 (725)
T ss_pred CCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHHH
Confidence 3457777788888899999988 775 58999999999888887655433322 1223556666665433 34444443
No 262
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.12 E-value=2.3e-10 Score=132.54 Aligned_cols=55 Identities=29% Similarity=0.483 Sum_probs=45.9
Q ss_pred cccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc
Q 044198 454 VEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN 523 (772)
Q Consensus 454 ~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~ 523 (772)
+..|..-|+++.|++++++.+...+.. ..+++|+||||||||++++++|..+...
T Consensus 10 ~~~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 10 IPVPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cCcchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 456777899999999999888766543 2479999999999999999999998654
No 263
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.12 E-value=3.1e-09 Score=125.46 Aligned_cols=132 Identities=23% Similarity=0.331 Sum_probs=92.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh------hhhcccchHH----HHHHHHHHHHHcCCceEEecccc
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEI------MSKMAGESES----NLREAFNVAEKNAPSIIFIDEID 292 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~------~~~~~g~~~~----~l~~~f~~a~~~~p~il~iDEid 292 (772)
..++||.||+.||||+.+..+|.+.+..|+++|..+- .+.|+.+... +-+.+. .|.... -.+++||++
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLV-eAlR~G-yWIVLDELN 965 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLV-EALRRG-YWIVLDELN 965 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHH-HHHhcC-cEEEeeccc
Confidence 4569999999999999999999999999999987543 2233222111 112223 333322 389999997
Q ss_pred ccccCCCCCchhhHHHHHHHHHHHhhccc------------ccCceEEEEeeCCC------CCCChhhhccCCceeEEEe
Q 044198 293 SIAPKREKTHGEVEKRIVSQLLTLMDGMK------------SRAHVMVIGATNRP------NSIDPALRRSGRFDKEIDI 354 (772)
Q Consensus 293 ~l~~~~~~~~~~~~~~v~~~L~~lld~~~------------~~~~v~vI~atn~~------~~ld~al~r~gRf~~~i~i 354 (772)
..+ ..++++|..++|.-+ ...++.++||.||| ..|..|+|. ||-. ++|
T Consensus 966 LAp-----------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFlE-~hF 1031 (4600)
T COG5271 966 LAP-----------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFLE-MHF 1031 (4600)
T ss_pred cCc-----------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhHh-hhc
Confidence 543 357788888888643 34578899999998 467889988 9854 556
Q ss_pred CCCCHHHHHHHHHHHh
Q 044198 355 GVPDEVGRLEVLRIHT 370 (772)
Q Consensus 355 ~~p~~~~r~~Il~~~~ 370 (772)
..-.+.+...||+..+
T Consensus 1032 ddipedEle~ILh~rc 1047 (4600)
T COG5271 1032 DDIPEDELEEILHGRC 1047 (4600)
T ss_pred ccCcHHHHHHHHhccC
Confidence 5555677777776444
No 264
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.12 E-value=2.9e-11 Score=114.05 Aligned_cols=109 Identities=28% Similarity=0.393 Sum_probs=73.4
Q ss_pred ceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch------hccc---ccchHHHHHHHHHHHhCCCeEEEEcCchhhh
Q 044198 498 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL------TMWF---GESEANVRDVFDKARQSAPCVLFFDELDSIA 568 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~------~~~v---g~se~~i~~vf~~a~~~~p~ilfiDEid~l~ 568 (772)
+++|+||||||||++|+.+|..++.+++.+.++... +.|. +..+..-..+.+..+ .++++||||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccC-
Confidence 489999999999999999999999999888776532 2221 111000001111111 4589999999876
Q ss_pred hccCCCCCCCCchhHHHHHHHHHhcCCC-----------CCC------cEEEEeecCCCC----CCCccccCCCCc
Q 044198 569 IQRGSSVGDGGGVDRIVNQLLTEMDGLS-----------AKK------TVFVIGATNRPD----MIDPALLRPGRL 623 (772)
Q Consensus 569 ~~r~~~~~~~~~~~~~~~~lL~~ld~~~-----------~~~------~v~vi~aTn~~~----~ld~allrpgRf 623 (772)
...+++.|+..++.-. ... ++.+|+|+|.++ .+++|+++ ||
T Consensus 78 ------------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ------------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ------------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 3567777888887531 011 489999999998 89999998 87
No 265
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=1.5e-09 Score=124.63 Aligned_cols=193 Identities=17% Similarity=0.250 Sum_probs=123.6
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE----------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYF---------- 251 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~---------- 251 (772)
++.+-+|+++.|.+..++.|+.++..- ..++.+||+||+|+||||+|+.+|+.+++.-
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 345678999999999999998888652 2245689999999999999999999886520
Q ss_pred ---EEEechhhhh----------hcccchHHHHHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHHH
Q 044198 252 ---LCINGPEIMS----------KMAGESESNLREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLL 314 (772)
Q Consensus 252 ---~~v~~~~~~~----------~~~g~~~~~l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~ 314 (772)
.+-+|..+.. .........++.+.+.+.. ....|++|||+|.+... ..+.|+
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~-----------a~NaLL 145 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT-----------AFNAML 145 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH-----------HHHHHH
Confidence 0001111110 0001122345555554332 22359999999988531 245677
Q ss_pred HHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCch
Q 044198 315 TLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVG 393 (772)
Q Consensus 315 ~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~ 393 (772)
..++.. ...+.+|.+|+.+..+.+.+++ |. ..++|..++.++..+.|+..+....+. ++..+..+++.+.| +.
T Consensus 146 KtLEEP--P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-sl 219 (618)
T PRK14951 146 KTLEEP--PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-SM 219 (618)
T ss_pred HhcccC--CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 766653 3456777777778888888887 66 458999999998888887665443322 22246677776665 44
Q ss_pred hhHHHHHHHH
Q 044198 394 ADLAALCTEG 403 (772)
Q Consensus 394 ~dl~~l~~~a 403 (772)
+++..++..+
T Consensus 220 R~al~lLdq~ 229 (618)
T PRK14951 220 RDALSLTDQA 229 (618)
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 266
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=1.7e-09 Score=122.72 Aligned_cols=185 Identities=17% Similarity=0.238 Sum_probs=123.7
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY----------- 250 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~----------- 250 (772)
+..+-+|+++.|.+..++.+..++... ..++.+||+||+|+|||++|+.+|+.+.+.
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 346778999999999999998877541 224679999999999999999999987531
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHH
Q 044198 251 -------------FLCINGPEIMSKMAGESESNLREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQL 313 (772)
Q Consensus 251 -------------~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 313 (772)
++.+++.. ......++.+...+.. ....|++|||+|.+.. ...+.|
T Consensus 77 ~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----------~A~NaL 139 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----------SAWNAL 139 (605)
T ss_pred HHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------HHHHHH
Confidence 12222211 0122345555554432 2235999999998742 124677
Q ss_pred HHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCC--cccccchhHHHHHhcCC
Q 044198 314 LTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMK--LAEDVNLETVARETHGF 391 (772)
Q Consensus 314 ~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~--l~~~~~l~~la~~t~g~ 391 (772)
+..++.. ...+++|.+|+.+..+.+++++ |+. .++|..|+..+....++..+.... +.+ ..+..++..+.|-
T Consensus 140 LKtLEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~-eal~~La~lS~Gd 213 (605)
T PRK05896 140 LKTLEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIED-NAIDKIADLADGS 213 (605)
T ss_pred HHHHHhC--CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCCc
Confidence 7777753 3457777788888999999988 765 589999999998888886654332 332 2466677766553
Q ss_pred chhhHHHHHHH
Q 044198 392 VGADLAALCTE 402 (772)
Q Consensus 392 ~~~dl~~l~~~ 402 (772)
.+++..++..
T Consensus 214 -lR~AlnlLek 223 (605)
T PRK05896 214 -LRDGLSILDQ 223 (605)
T ss_pred -HHHHHHHHHH
Confidence 3344444443
No 267
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.11 E-value=8.8e-11 Score=114.18 Aligned_cols=111 Identities=27% Similarity=0.380 Sum_probs=77.3
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhCC----cEEEEecccchhcccccchHHHHHHHHH------HHhCCCeEEEEcCc
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQA----NFISIKGPELLTMWFGESEANVRDVFDK------ARQSAPCVLFFDEL 564 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~~----~~i~v~~~~l~~~~vg~se~~i~~vf~~------a~~~~p~ilfiDEi 564 (772)
|...+||+||+|||||.+|+++|..+.. +++.++++++... ++.+..+..+... +... .|||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~--gVVllDEi 77 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEG--GVVLLDEI 77 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHH--TEEEEETG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccch--hhhhhHHH
Confidence 4567999999999999999999999996 9999999987651 1112222222221 2222 39999999
Q ss_pred hhhhhccCCCCCCCCchhHHHHHHHHHhcCCC---------CCCcEEEEeecCCCC
Q 044198 565 DSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS---------AKKTVFVIGATNRPD 611 (772)
Q Consensus 565 d~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~---------~~~~v~vi~aTn~~~ 611 (772)
|...+..+. +..-....+.+.||+.||+.. +.+++++|+|+|--.
T Consensus 78 dKa~~~~~~--~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 78 DKAHPSNSG--GADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp GGCSHTTTT--CSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hhccccccc--cchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 999876211 222225688999999998642 236799999999754
No 268
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.11 E-value=1.5e-09 Score=119.28 Aligned_cols=175 Identities=24% Similarity=0.373 Sum_probs=118.9
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY----------- 250 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~----------- 250 (772)
+..+..|+++.|.++.++.+++.+... ..++.+||+||||+|||++++++++.+...
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 345678999999999999998888541 234579999999999999999999987432
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHH
Q 044198 251 -------------FLCINGPEIMSKMAGESESNLREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQL 313 (772)
Q Consensus 251 -------------~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 313 (772)
++.+++.. ......++.+++.+.. ....+++|||+|.+.. ...+.|
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~L 137 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNAL 137 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHHH
Confidence 23333221 1123346666665543 2235999999987742 234567
Q ss_pred HHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcC
Q 044198 314 LTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHG 390 (772)
Q Consensus 314 ~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g 390 (772)
+..++.. ...+++|.+|+.++.+.+++++ |+. .++++.|+..+..++++...+...+. ++..+..++..+.|
T Consensus 138 l~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 138 LKTLEEP--PEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHhCC--ccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 7777653 2456677777888888888887 774 58999999999999988766543322 22235556665544
No 269
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=1.2e-09 Score=124.91 Aligned_cols=187 Identities=19% Similarity=0.286 Sum_probs=123.5
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY------------ 250 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~------------ 250 (772)
..+-+|++|.|.+..++.|..++... ..++.+||+||+|+||||+|+.+|+.+++.
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 35568999999999999998888641 224568999999999999999999988652
Q ss_pred ------------EEEEechhhhhhcccchHHHHHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHHH
Q 044198 251 ------------FLCINGPEIMSKMAGESESNLREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLL 314 (772)
Q Consensus 251 ------------~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~ 314 (772)
++.+++. .......++.+...+.. ....|++|||+|.+.. ...+.|+
T Consensus 78 ~C~~i~~~~~~d~~ei~~~------~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a~naLL 140 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAA------SNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SAFNAML 140 (527)
T ss_pred HHHHHhcCCCCceeEeecc------ccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HHHHHHH
Confidence 1112211 01223456666665532 2345999999998742 2346677
Q ss_pred HHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCch
Q 044198 315 TLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVG 393 (772)
Q Consensus 315 ~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~ 393 (772)
..++.. ...+.+|.+|+.+..+.+.+++ |. ..++|..++.++....+...+..-.+. +...+..++..+.| +.
T Consensus 141 K~LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-sl 214 (527)
T PRK14969 141 KTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SM 214 (527)
T ss_pred HHHhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 777763 3456777777778888878887 65 448899999988887777655432222 22235666666554 34
Q ss_pred hhHHHHHHHHH
Q 044198 394 ADLAALCTEGA 404 (772)
Q Consensus 394 ~dl~~l~~~a~ 404 (772)
++...++..+.
T Consensus 215 r~al~lldqai 225 (527)
T PRK14969 215 RDALSLLDQAI 225 (527)
T ss_pred HHHHHHHHHHH
Confidence 45555555543
No 270
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=2.3e-09 Score=118.35 Aligned_cols=180 Identities=20% Similarity=0.243 Sum_probs=116.9
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh--
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEI-- 259 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~-- 259 (772)
+..+.+|+++.|.+..++.++..+... ..++++|||||||+|||++++++++.+........+..+
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 456778999999999999998888651 235689999999999999999999987542111000000
Q ss_pred ----hhhcccchHHHHHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEe
Q 044198 260 ----MSKMAGESESNLREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGA 331 (772)
Q Consensus 260 ----~~~~~g~~~~~l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~a 331 (772)
...........++.+++.+.. ..+.+++|||+|.+.. ...+.|+..++.. ....++|.+
T Consensus 78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----------~~~~~ll~~le~~--~~~~~~Il~ 144 (367)
T PRK14970 78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----------AAFNAFLKTLEEP--PAHAIFILA 144 (367)
T ss_pred ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----------HHHHHHHHHHhCC--CCceEEEEE
Confidence 000111223456666665432 2346999999987742 1245566666542 234566667
Q ss_pred eCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhc
Q 044198 332 TNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETH 389 (772)
Q Consensus 332 tn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~ 389 (772)
++.+..+.+++++ |+. .+++..|+.++...++........+. ++..++.++..+.
T Consensus 145 ~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~ 200 (367)
T PRK14970 145 TTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKAD 200 (367)
T ss_pred eCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCC
Confidence 7777888899987 654 48999999999888887655443321 2234566666544
No 271
>PHA02244 ATPase-like protein
Probab=99.10 E-value=4e-09 Score=112.35 Aligned_cols=122 Identities=25% Similarity=0.356 Sum_probs=80.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcccc--hHHHHH-HHHHHHHHcCCceEEeccccccccCCC
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGE--SESNLR-EAFNVAEKNAPSIIFIDEIDSIAPKRE 299 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~~g~--~~~~l~-~~f~~a~~~~p~il~iDEid~l~~~~~ 299 (772)
..+|||+||||||||++|+++|..++.+++.+++..-.....|. ....+. .-|-.+. ....+++|||++.+.+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~-- 195 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPE-- 195 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCCHH--
Confidence 56799999999999999999999999999998853111111110 000111 1122222 34579999999977532
Q ss_pred CCchhhHHHHHHHHHHHhhc---------ccccCceEEEEeeCCC-----------CCCChhhhccCCceeEEEeCCCCH
Q 044198 300 KTHGEVEKRIVSQLLTLMDG---------MKSRAHVMVIGATNRP-----------NSIDPALRRSGRFDKEIDIGVPDE 359 (772)
Q Consensus 300 ~~~~~~~~~v~~~L~~lld~---------~~~~~~v~vI~atn~~-----------~~ld~al~r~gRf~~~i~i~~p~~ 359 (772)
+...|..+++. .....++.+|+|+|++ ..++++++. ||. .+++..|+.
T Consensus 196 ---------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~ 263 (383)
T PHA02244 196 ---------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEK 263 (383)
T ss_pred ---------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcH
Confidence 23344444431 2234678999999984 577999998 996 489999984
No 272
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.09 E-value=1.8e-09 Score=121.13 Aligned_cols=168 Identities=15% Similarity=0.219 Sum_probs=108.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhcccchHHHHHHHHHHHH--HcCCceEEeccccccc
Q 044198 223 PKGILLHGPPGTGKTLLARAIANET-----GCYFLCINGPEIMSKMAGESESNLREAFNVAE--KNAPSIIFIDEIDSIA 295 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l-----~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~--~~~p~il~iDEid~l~ 295 (772)
..+++|||++|+|||+|++++++.+ +..++++++.++...+........ ..+.... -....+|+|||++.+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~-~~~~~~~~~~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTH-KEIEQFKNEICQNDVLIIDDVQFLS 219 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhh-hHHHHHHHHhccCCEEEEecccccc
Confidence 3569999999999999999999865 457788998887765543322110 1111111 1345699999999885
Q ss_pred cCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCC---CCChhhhccCCc--eeEEEeCCCCHHHHHHHHHHHh
Q 044198 296 PKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPN---SIDPALRRSGRF--DKEIDIGVPDEVGRLEVLRIHT 370 (772)
Q Consensus 296 ~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~---~ld~al~r~gRf--~~~i~i~~p~~~~r~~Il~~~~ 370 (772)
.+. ...+.|..+++........+++++..+|. .+++.+++ || ...+.+..|+.++|.+||+..+
T Consensus 220 ~k~---------~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 220 YKE---------KTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEI 288 (450)
T ss_pred CCH---------HHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHH
Confidence 321 23355666666665555545554444453 46788888 77 4678899999999999999887
Q ss_pred ccCCc---ccccchhHHHHHhcCCchhhHHHHHHHH
Q 044198 371 KNMKL---AEDVNLETVARETHGFVGADLAALCTEG 403 (772)
Q Consensus 371 ~~~~l---~~~~~l~~la~~t~g~~~~dl~~l~~~a 403 (772)
....+ .++..++.++....|- .+.+..++...
T Consensus 289 ~~~gl~~~l~~evl~~Ia~~~~gd-~R~L~gaL~~l 323 (450)
T PRK14087 289 KNQNIKQEVTEEAINFISNYYSDD-VRKIKGSVSRL 323 (450)
T ss_pred HhcCCCCCCCHHHHHHHHHccCCC-HHHHHHHHHHH
Confidence 64322 2222456666666553 34444445444
No 273
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.07 E-value=7.7e-10 Score=120.84 Aligned_cols=121 Identities=23% Similarity=0.496 Sum_probs=80.7
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCC-------cEEEEec----ccchhcc----cccc--hHHHHHHHHHHHhC--CC
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQA-------NFISIKG----PELLTMW----FGES--EANVRDVFDKARQS--AP 556 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~-------~~i~v~~----~~l~~~~----vg~s--e~~i~~vf~~a~~~--~p 556 (772)
.++++|+||||||||++|+.+|..+.. .++.+.. .+++..+ +|-. .....++.+.|... .|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 567999999999999999999988742 1233332 2333222 1111 11233445666653 47
Q ss_pred eEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcC--------------------CCCCCcEEEEeecCCCC----C
Q 044198 557 CVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDG--------------------LSAKKTVFVIGATNRPD----M 612 (772)
Q Consensus 557 ~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~--------------------~~~~~~v~vi~aTn~~~----~ 612 (772)
+++|||||+..- ..++..++++.|+. +.-..++.||||+|..+ .
T Consensus 274 ~vliIDEINRan------------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~ 341 (459)
T PRK11331 274 YVFIIDEINRAN------------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAV 341 (459)
T ss_pred cEEEEehhhccC------------HHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhh
Confidence 999999998652 34556666666552 23346899999999988 8
Q ss_pred CCccccCCCCccccccCCC
Q 044198 613 IDPALLRPGRLDQLIYIPL 631 (772)
Q Consensus 613 ld~allrpgRf~~~i~~~~ 631 (772)
+|.|++| ||. .|++.+
T Consensus 342 lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 342 VDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ccHHHHh--hhh-eEEecC
Confidence 9999999 996 566654
No 274
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=3.7e-09 Score=119.34 Aligned_cols=192 Identities=21% Similarity=0.302 Sum_probs=121.0
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-------E-EEE
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY-------F-LCI 254 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~-------~-~~v 254 (772)
..+-.|+++.|.+..++.|+..+... ..++.+||+||+|+|||++|+.+|+.+++. + .+.
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 45678899999999999998888641 224568999999999999999999988641 0 011
Q ss_pred echhhhhh----------cccchHHHHHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcc
Q 044198 255 NGPEIMSK----------MAGESESNLREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGM 320 (772)
Q Consensus 255 ~~~~~~~~----------~~g~~~~~l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~ 320 (772)
+|..+... ........++.+...+.. ....|++|||+|.+.. ...+.|+..++..
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naLLk~LEep 146 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNALLKTLEEP 146 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHHHHHHhcC
Confidence 11111110 000112334454443332 3346999999997742 2235677777653
Q ss_pred cccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCchhhHHHH
Q 044198 321 KSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVGADLAAL 399 (772)
Q Consensus 321 ~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l 399 (772)
...+++|.+|+.++.+.+++++ |+. .+.+..|+..+....++..++...+. ++..+..++..+.|- .+++..+
T Consensus 147 --p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~-lr~al~~ 220 (486)
T PRK14953 147 --PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGG-MRDAASL 220 (486)
T ss_pred --CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHH
Confidence 2345666667777788888887 665 58999999999998888776654432 222355666655542 3344444
Q ss_pred HHHH
Q 044198 400 CTEG 403 (772)
Q Consensus 400 ~~~a 403 (772)
+..+
T Consensus 221 Ldkl 224 (486)
T PRK14953 221 LDQA 224 (486)
T ss_pred HHHH
Confidence 4433
No 275
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.07 E-value=6.7e-09 Score=102.08 Aligned_cols=168 Identities=23% Similarity=0.331 Sum_probs=119.0
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPE 258 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~ 258 (772)
.++.+...+|.|++.|++.|-+.-.... + -.+..+|||+|..|||||+|++++.++. +..++.|+-.+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~------~---G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFA------E---GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHH------c---CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 3466788899999999999865544322 1 1456789999999999999999999887 45678888766
Q ss_pred hhhhcccchHHHHHHHHHHHHH-cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhc-ccc-cCceEEEEeeCCC
Q 044198 259 IMSKMAGESESNLREAFNVAEK-NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDG-MKS-RAHVMVIGATNRP 335 (772)
Q Consensus 259 ~~~~~~g~~~~~l~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~-~~~-~~~v~vI~atn~~ 335 (772)
+.. +-.++...+. ..+.|||+|++.+=- ++ .--..|...++| +.. ..||++.+|+|+.
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe~-------gd---~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSFEE-------GD---DAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCCCC-------Cc---hHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 532 3344544444 346799999985321 11 123456666765 332 3579999999987
Q ss_pred CCCCh--------------------hhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCccc
Q 044198 336 NSIDP--------------------ALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAE 377 (772)
Q Consensus 336 ~~ld~--------------------al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~ 377 (772)
..|+. .+.-+.||...+.|.+++.++.+.|+..+.+...+.-
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 54431 2222469999999999999999999999887766653
No 276
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.06 E-value=5e-09 Score=113.34 Aligned_cols=174 Identities=22% Similarity=0.282 Sum_probs=113.3
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----eEEEEec
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGC-----YFLCING 256 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~-----~~~~v~~ 256 (772)
+..+.+++++.|.++.++.++.++... ...+++|+||||||||++++++++.+.. .++.+++
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~ 76 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA 76 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence 445678899999999999999887541 1236999999999999999999998732 3444443
Q ss_pred hhhhhhcccchHHHHHHHHHHHHH------cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEE
Q 044198 257 PEIMSKMAGESESNLREAFNVAEK------NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIG 330 (772)
Q Consensus 257 ~~~~~~~~g~~~~~l~~~f~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~ 330 (772)
++.. ....++..+..... ..+.+++|||+|.+... ....|...++.... ...+|.
T Consensus 77 ~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-----------~~~~L~~~le~~~~--~~~lIl 137 (319)
T PRK00440 77 SDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-----------AQQALRRTMEMYSQ--NTRFIL 137 (319)
T ss_pred cccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-----------HHHHHHHHHhcCCC--CCeEEE
Confidence 3211 11112222222211 12458999999887421 13456666665443 345556
Q ss_pred eeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcC
Q 044198 331 ATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHG 390 (772)
Q Consensus 331 atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g 390 (772)
++|.+..+.+++++ |+. .++++.++.++...+++..+....+. +...++.++..+.|
T Consensus 138 ~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g 195 (319)
T PRK00440 138 SCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG 195 (319)
T ss_pred EeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 67777777777877 665 48999999999988888776543321 22346677766544
No 277
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=4.6e-09 Score=112.23 Aligned_cols=183 Identities=16% Similarity=0.260 Sum_probs=125.1
Q ss_pred ccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc----------EEEEec
Q 044198 460 RWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN----------FISIKG 529 (772)
Q Consensus 460 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~----------~i~v~~ 529 (772)
.|++|.|++.+++.|...+.. + +-+..+||+||+|+||+++|.++|..+-+. +...+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------N-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 588999999999999887754 1 235679999999999999999999886321 112233
Q ss_pred ccchhc---c--ccc--------------------chHHHHHHHHHHHh----CCCeEEEEcCchhhhhccCCCCCCCCc
Q 044198 530 PELLTM---W--FGE--------------------SEANVRDVFDKARQ----SAPCVLFFDELDSIAIQRGSSVGDGGG 580 (772)
Q Consensus 530 ~~l~~~---~--vg~--------------------se~~i~~vf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~ 580 (772)
||+.-- | -|. .-..+|++-+.+.. ....|++||++|.+
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m------------- 136 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM------------- 136 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-------------
Confidence 333200 0 011 01246666555443 34579999999988
Q ss_pred hhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHH
Q 044198 581 VDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIA 660 (772)
Q Consensus 581 ~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la 660 (772)
.....|.||..|+... +.++|..|+.++.|-|.+.+ |+. .+.|++|+.++..++++........ +.+...++
T Consensus 137 ~~~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 137 NEAAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred CHHHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 3556889999999754 33566677788999999987 996 9999999999999999876432111 22356788
Q ss_pred HHcCCCCHHHHHHHHH
Q 044198 661 KYTHGFSGADITEICQ 676 (772)
Q Consensus 661 ~~~~g~sg~di~~l~~ 676 (772)
..+.|--+ ...++++
T Consensus 209 ~~a~Gs~~-~al~~l~ 223 (314)
T PRK07399 209 ALAQGSPG-AAIANIE 223 (314)
T ss_pred HHcCCCHH-HHHHHHH
Confidence 87777444 4334444
No 278
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.06 E-value=9.4e-09 Score=119.68 Aligned_cols=164 Identities=25% Similarity=0.431 Sum_probs=105.2
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEE
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET----------GCYFL 252 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l----------~~~~~ 252 (772)
+.+.+|+++.|.+..++.+...+.. ..+.+++|+|||||||||+|+++++.. +.+|+
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 3466788999999998887665533 124579999999999999999998765 34688
Q ss_pred EEechhhhh-------hcccchHH----HHHHHHHH----------HHHcCCceEEeccccccccCCCCCchhhHHHHHH
Q 044198 253 CINGPEIMS-------KMAGESES----NLREAFNV----------AEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVS 311 (772)
Q Consensus 253 ~v~~~~~~~-------~~~g~~~~----~l~~~f~~----------a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 311 (772)
.++|..+.. ...+.... ..+..+.. .......+|||||++.+.+. ...
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-----------~Q~ 283 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-----------LQN 283 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH-----------HHH
Confidence 999865420 11111100 00111110 01123459999999877432 223
Q ss_pred HHHHHhhccc--------------------------ccCceEEEEee-CCCCCCChhhhccCCceeEEEeCCCCHHHHHH
Q 044198 312 QLLTLMDGMK--------------------------SRAHVMVIGAT-NRPNSIDPALRRSGRFDKEIDIGVPDEVGRLE 364 (772)
Q Consensus 312 ~L~~lld~~~--------------------------~~~~v~vI~at-n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~ 364 (772)
.|+..++... ....+++|++| +.+..+++++++ ||. .+.+++++.++..+
T Consensus 284 ~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~ 360 (615)
T TIGR02903 284 KLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHH
Confidence 4444443210 12345666554 557789999988 886 47889999999999
Q ss_pred HHHHHhccC
Q 044198 365 VLRIHTKNM 373 (772)
Q Consensus 365 Il~~~~~~~ 373 (772)
|++......
T Consensus 361 Il~~~a~~~ 369 (615)
T TIGR02903 361 IVLNAAEKI 369 (615)
T ss_pred HHHHHHHHc
Confidence 999876653
No 279
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=3.8e-09 Score=121.07 Aligned_cols=187 Identities=19% Similarity=0.277 Sum_probs=124.8
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY----------- 250 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~----------- 250 (772)
+..+-+|++|.|.+..++.|+..+... ..++.+||+||+|+|||++|+++|+.+.+.
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 345678999999999999999888641 224569999999999999999999988642
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHH----HHcCCceEEeccccccccCCCCCchhhHHHHHHHH
Q 044198 251 -------------FLCINGPEIMSKMAGESESNLREAFNVA----EKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQL 313 (772)
Q Consensus 251 -------------~~~v~~~~~~~~~~g~~~~~l~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 313 (772)
++.+++.. ...-..++.+.+.+ ......+++|||+|.+.. ...+.|
T Consensus 77 ~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-----------~a~naL 139 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-----------SAFNAL 139 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-----------HHHHHH
Confidence 12222110 01123444444332 223456999999998842 234667
Q ss_pred HHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCc
Q 044198 314 LTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFV 392 (772)
Q Consensus 314 ~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 392 (772)
+..++. ....+++|.+|+.+..+.+++++ |+. .++|..++.++..+.++..+....+. +...+..++....| .
T Consensus 140 LK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-d 213 (563)
T PRK06647 140 LKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-S 213 (563)
T ss_pred HHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 777764 23467777777778889999988 776 48899999999888888765433322 22346667776665 4
Q ss_pred hhhHHHHHHHH
Q 044198 393 GADLAALCTEG 403 (772)
Q Consensus 393 ~~dl~~l~~~a 403 (772)
.+++..++..+
T Consensus 214 lR~alslLdkl 224 (563)
T PRK06647 214 VRDAYTLFDQV 224 (563)
T ss_pred HHHHHHHHHHH
Confidence 44555555443
No 280
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.06 E-value=6.6e-10 Score=103.90 Aligned_cols=129 Identities=34% Similarity=0.430 Sum_probs=83.1
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCc---EEEEecccchhc--------------ccccchHHHHHHHHHHHhCCCeE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQAN---FISIKGPELLTM--------------WFGESEANVRDVFDKARQSAPCV 558 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~---~i~v~~~~l~~~--------------~vg~se~~i~~vf~~a~~~~p~i 558 (772)
+.+++|+||||||||++++.+|..+... ++.+++...... .........+.+++.++...+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4569999999999999999999998775 777777654322 12234566788899999888899
Q ss_pred EEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCC
Q 044198 559 LFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLP 632 (772)
Q Consensus 559 lfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p 632 (772)
+|+||++.+....... ..................+..+|+++|......+..+++ |++..+.++.+
T Consensus 82 iiiDei~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEA-------LLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHH-------HHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh-ccceEEEecCC
Confidence 9999999885432110 000000000111112344578888888733334444443 88888877654
No 281
>PRK04132 replication factor C small subunit; Provisional
Probab=99.05 E-value=1.7e-09 Score=127.51 Aligned_cols=146 Identities=17% Similarity=0.196 Sum_probs=113.5
Q ss_pred CCceEEeC--CCCCchhHHHHHHHHHh-----CCcEEEEecccchhcccccchHHHHHHHHHHHhCC------CeEEEEc
Q 044198 496 SRGVLFYG--PPGCGKTLLAKAIANEC-----QANFISIKGPELLTMWFGESEANVRDVFDKARQSA------PCVLFFD 562 (772)
Q Consensus 496 ~~~iLl~G--ppGtGKT~la~alA~~~-----~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~------p~ilfiD 562 (772)
.-+-+..| |++.||||+|+++|+++ +.+++.+++++..+ -..++++.+.+.... ..|+|||
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIID 637 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLD 637 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEE
Confidence 34457778 99999999999999997 56899999998422 245666665544322 3699999
Q ss_pred CchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHH
Q 044198 563 ELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFK 642 (772)
Q Consensus 563 Eid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~ 642 (772)
|+|.+- ...++.|+..|+.. ..++.+|++||.++.+-+++.+ |+. .+.|++|+.++....++
T Consensus 638 EaD~Lt-------------~~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC~-~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 638 EADALT-------------QDAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLR 699 (846)
T ss_pred CcccCC-------------HHHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hce-EEeCCCCCHHHHHHHHH
Confidence 999992 44688899999964 3577899999999999999987 996 89999999999888888
Q ss_pred HhhccCCCC-CcccHHHHHHHcCC
Q 044198 643 SCLRKSPVS-KDIDLKAIAKYTHG 665 (772)
Q Consensus 643 ~~~~~~~~~-~~~~~~~la~~~~g 665 (772)
..+.+.++. ++..+..+++.+.|
T Consensus 700 ~I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 700 YIAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCC
Confidence 777654443 45567888887776
No 282
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=3.1e-09 Score=122.87 Aligned_cols=186 Identities=21% Similarity=0.309 Sum_probs=124.2
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY----------- 250 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~----------- 250 (772)
++.+-+|++|.|.+..++.|+.++... ..++.+||+||+|+|||++|+.+|+.+++.
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 345678999999999999998888641 235568999999999999999999987542
Q ss_pred -------------EEEEechhhhhhcccchHHHHHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHH
Q 044198 251 -------------FLCINGPEIMSKMAGESESNLREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQL 313 (772)
Q Consensus 251 -------------~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 313 (772)
++.+++.. ......++.+...+.. ....|++|||+|.+.. ...+.|
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a~naL 139 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NAFNAL 139 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HHHHHH
Confidence 22233211 1122345555554432 2235999999998752 234678
Q ss_pred HHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCc
Q 044198 314 LTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFV 392 (772)
Q Consensus 314 ~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 392 (772)
+..|+.. ...+++|.+|+.++.|.+.+++ |.. .++|..++.++....+...++...+. ++..+..+++.+.| .
T Consensus 140 Lk~LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~ 213 (576)
T PRK14965 140 LKTLEEP--PPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-S 213 (576)
T ss_pred HHHHHcC--CCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-C
Confidence 8888763 3467777888888999999987 664 48888888888777776655433222 22346667776665 3
Q ss_pred hhhHHHHHHH
Q 044198 393 GADLAALCTE 402 (772)
Q Consensus 393 ~~dl~~l~~~ 402 (772)
.++...++..
T Consensus 214 lr~al~~Ldq 223 (576)
T PRK14965 214 MRDSLSTLDQ 223 (576)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 283
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.05 E-value=6.2e-09 Score=116.84 Aligned_cols=175 Identities=21% Similarity=0.327 Sum_probs=117.5
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY----------- 250 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~----------- 250 (772)
+..+.+|++|.|.+..++.|+..+... ..++.+||+||+|+|||++|+++|+.+.+.
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 345678999999999999998888641 224669999999999999999999987432
Q ss_pred --------------EEEEechhhhhhcccchHHHHHHHHHHH----HHcCCceEEeccccccccCCCCCchhhHHHHHHH
Q 044198 251 --------------FLCINGPEIMSKMAGESESNLREAFNVA----EKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQ 312 (772)
Q Consensus 251 --------------~~~v~~~~~~~~~~g~~~~~l~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 312 (772)
++.+++... ..-..++.+.+.. ......|++|||+|.+.. ...+.
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~~n~ 140 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EAFNS 140 (451)
T ss_pred cHHHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HHHHH
Confidence 222332110 0112333322222 224467999999988742 23467
Q ss_pred HHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcC
Q 044198 313 LLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHG 390 (772)
Q Consensus 313 L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g 390 (772)
|+..++... ..+.+|.+|+.+..+.+++++ |+. .+++..++.++....++...+..... +...++.++..+.|
T Consensus 141 LLk~lEep~--~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 141 LLKTLEEPP--QHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHHHhhcCC--CCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 777777642 356777777888889999988 765 48999999999888887665433221 22245666666654
No 284
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.04 E-value=6.8e-10 Score=118.85 Aligned_cols=161 Identities=24% Similarity=0.387 Sum_probs=101.6
Q ss_pred CCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC---------eEEEE
Q 044198 184 DDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGC---------YFLCI 254 (772)
Q Consensus 184 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~---------~~~~v 254 (772)
..+.|++|.|.++.++.+.-....+ ...|+||.|+|||||||+++++++.++. .+..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 3567889999999988775433211 1257999999999999999999999842 11111
Q ss_pred ec-hhh--------hhh---------------cccc--hHHHH---HHHHHHH--HHcCCceEEeccccccccCCCCCch
Q 044198 255 NG-PEI--------MSK---------------MAGE--SESNL---REAFNVA--EKNAPSIIFIDEIDSIAPKREKTHG 303 (772)
Q Consensus 255 ~~-~~~--------~~~---------------~~g~--~~~~l---~~~f~~a--~~~~p~il~iDEid~l~~~~~~~~~ 303 (772)
.+ ++. ... ..|. .+..+ +..|+.- ......+||+||++.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~------- 142 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED------- 142 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH-------
Confidence 11 000 000 0110 00000 0011100 001124899999987742
Q ss_pred hhHHHHHHHHHHHhhccc-----------ccCceEEEEeeCCCC-CCChhhhccCCceeEEEeCCCCH-HHHHHHHHHHh
Q 044198 304 EVEKRIVSQLLTLMDGMK-----------SRAHVMVIGATNRPN-SIDPALRRSGRFDKEIDIGVPDE-VGRLEVLRIHT 370 (772)
Q Consensus 304 ~~~~~v~~~L~~lld~~~-----------~~~~v~vI~atn~~~-~ld~al~r~gRf~~~i~i~~p~~-~~r~~Il~~~~ 370 (772)
.+.+.|++.|+.-. ...++++++++|+.+ .+++++.. ||...+.++.|.. ++|.+|++...
T Consensus 143 ----~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 143 ----HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred ----HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 45567777775322 235689999999865 68899988 9999999998876 88999998643
No 285
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=1.9e-09 Score=115.82 Aligned_cols=150 Identities=19% Similarity=0.272 Sum_probs=105.5
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhCCc------------------------EEEEecccchhcccccchHHHHHHHHH
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQAN------------------------FISIKGPELLTMWFGESEANVRDVFDK 550 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~~~------------------------~i~v~~~~l~~~~vg~se~~i~~vf~~ 550 (772)
.+..+||+||+|+|||++|+++|..+.+. ++.+...+- ++. -+-..+|++-+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~--i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKT--IKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCC--CCHHHHHHHHHH
Confidence 35679999999999999999999887431 222211100 000 123466766655
Q ss_pred HHh----CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCcccc
Q 044198 551 ARQ----SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQL 626 (772)
Q Consensus 551 a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~ 626 (772)
+.. ....|++||++|.+ +....|.||..|+. +..++++|.+|+.++.|.|.+++ |+. .
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m-------------~~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~-~ 159 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAM-------------NRNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ-Q 159 (328)
T ss_pred HhhccccCCCeEEEECChhhC-------------CHHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce-e
Confidence 543 34579999999998 35678999999996 34678888999999999999998 998 6
Q ss_pred ccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCH
Q 044198 627 IYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSG 668 (772)
Q Consensus 627 i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg 668 (772)
+.|++|+.++-.+.+...... ..+.+...++..+.|--+
T Consensus 160 ~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 160 QACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGSPL 198 (328)
T ss_pred eeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCCHH
Confidence 999999999888888765421 223344566666666443
No 286
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.02 E-value=7.4e-09 Score=115.91 Aligned_cols=166 Identities=23% Similarity=0.348 Sum_probs=113.3
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcccccchHHHHHHHHHHH--------hCCCeEEEEcCch
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKAR--------QSAPCVLFFDELD 565 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~--------~~~p~ilfiDEid 565 (772)
++.+-+||+||||-||||||+.+|+.+|+.++.|+++|-. +...++.....|- ...|.+|++||||
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEID 397 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEID 397 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEeccc
Confidence 4455689999999999999999999999999999999842 3334444333332 2568999999998
Q ss_pred hhhhccCCCCCCCCchhHHHHHHHHHhcCC------CCC-------------CcEEEEeecCCCCCCCcccc--CCCCcc
Q 044198 566 SIAIQRGSSVGDGGGVDRIVNQLLTEMDGL------SAK-------------KTVFVIGATNRPDMIDPALL--RPGRLD 624 (772)
Q Consensus 566 ~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~------~~~-------------~~v~vi~aTn~~~~ld~all--rpgRf~ 624 (772)
.- ....++.+|..+..- ... -.--|||.+|. ..-|||. | -|-
T Consensus 398 Ga-------------~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr--~~A 460 (877)
T KOG1969|consen 398 GA-------------PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLR--PFA 460 (877)
T ss_pred CC-------------cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcc--cce
Confidence 53 244566666665511 111 12358888884 4456663 4 366
Q ss_pred ccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 044198 625 QLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREE 686 (772)
Q Consensus 625 ~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~ 686 (772)
.+|+|++|......+=|+..+.+-++. +.-.+..|+++++ .||+..++.....|....
T Consensus 461 ~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~----~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 461 EIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQ----NDIRSCINTLQFLASNVD 519 (877)
T ss_pred EEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhc----chHHHHHHHHHHHHHhcc
Confidence 899999998887776666666555443 2233555555544 599999998888876654
No 287
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.2e-09 Score=126.19 Aligned_cols=167 Identities=22% Similarity=0.323 Sum_probs=122.9
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh----------CCcEEEE
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISI 527 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~----------~~~~i~v 527 (772)
...++-++|-++-.+.+.+.+.. +...+-+|+|+||+|||.++..+|... +...+++
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 34455667766555554444433 345567899999999999999999765 4567788
Q ss_pred ecccch--hcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEe
Q 044198 528 KGPELL--TMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIG 605 (772)
Q Consensus 528 ~~~~l~--~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 605 (772)
+...+. .+|-|+.|..++.+.+...+..+.|||||||+.+.+..+..+ + .-...|-|--.| .++.+-+|+
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G---~-a~DAaNiLKPaL----ARGeL~~IG 304 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG---G-AMDAANLLKPAL----ARGELRCIG 304 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc---c-ccchhhhhHHHH----hcCCeEEEE
Confidence 887776 569999999999999999988899999999999987754321 1 122233333333 345677888
Q ss_pred ecCCC-----CCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccC
Q 044198 606 ATNRP-----DMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKS 648 (772)
Q Consensus 606 aTn~~-----~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~ 648 (772)
||..- =.-|+||-| ||. .|++..|+.++-..|++-.-.++
T Consensus 305 ATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~y 349 (786)
T COG0542 305 ATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERY 349 (786)
T ss_pred eccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHH
Confidence 88643 366899999 998 89999999999999997655443
No 288
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.02 E-value=3.8e-09 Score=114.54 Aligned_cols=125 Identities=29% Similarity=0.427 Sum_probs=93.2
Q ss_pred ceEEeCCCCCchhHHHHHHHHHhC------------------------CcEEEEecccchhcccccchHHHHHHHHHHHh
Q 044198 498 GVLFYGPPGCGKTLLAKAIANECQ------------------------ANFISIKGPELLTMWFGESEANVRDVFDKARQ 553 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~~------------------------~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~ 553 (772)
.+||+||||+|||++|.++|+.+. ..++.++.++....- -....++.+-+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 599999999999999999999886 467888888753321 123445555544433
Q ss_pred C----CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccC
Q 044198 554 S----APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYI 629 (772)
Q Consensus 554 ~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~ 629 (772)
. ...|++|||+|.+. ....|.++..|+. +..+..+|.+||.|+.+-+.+.+ |+. .+.|
T Consensus 104 ~~~~~~~kviiidead~mt-------------~~A~nallk~lEe--p~~~~~~il~~n~~~~il~tI~S--Rc~-~i~f 165 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLT-------------EDAANALLKTLEE--PPKNTRFILITNDPSKILPTIRS--RCQ-RIRF 165 (325)
T ss_pred CCCCCCceEEEeCcHHHHh-------------HHHHHHHHHHhcc--CCCCeEEEEEcCChhhccchhhh--cce-eeec
Confidence 2 35799999999994 4568889999985 45578899999999998888877 886 8888
Q ss_pred CCCCHHHHHHHHH
Q 044198 630 PLPDEHSRLQIFK 642 (772)
Q Consensus 630 ~~p~~~~r~~Il~ 642 (772)
++|+...+....+
T Consensus 166 ~~~~~~~~i~~~e 178 (325)
T COG0470 166 KPPSRLEAIAWLE 178 (325)
T ss_pred CCchHHHHHHHhh
Confidence 8766655444444
No 289
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.01 E-value=7e-10 Score=104.58 Aligned_cols=109 Identities=29% Similarity=0.477 Sum_probs=70.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh--cccchHHH-------HHHHHHHHHHcCCceEEeccccccc
Q 044198 225 GILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSK--MAGESESN-------LREAFNVAEKNAPSIIFIDEIDSIA 295 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~--~~g~~~~~-------l~~~f~~a~~~~p~il~iDEid~l~ 295 (772)
+|+|+||||||||++++.+|+.++.+++.++++..... ..|..... -..+.+.. ..+++++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc--cceeEEEECCcccCC
Confidence 58999999999999999999999999998887553211 11110000 00000001 146799999998653
Q ss_pred cCCCCCchhhHHHHHHHHHHHhhccc-----------ccC------ceEEEEeeCCCC----CCChhhhccCCc
Q 044198 296 PKREKTHGEVEKRIVSQLLTLMDGMK-----------SRA------HVMVIGATNRPN----SIDPALRRSGRF 348 (772)
Q Consensus 296 ~~~~~~~~~~~~~v~~~L~~lld~~~-----------~~~------~v~vI~atn~~~----~ld~al~r~gRf 348 (772)
..+.+.|..+++.-. ... ++.+|+|+|+.+ .+++++++ ||
T Consensus 79 -----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 -----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 345666777766321 111 389999999998 89999998 87
No 290
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.01 E-value=9.7e-09 Score=115.92 Aligned_cols=188 Identities=18% Similarity=0.241 Sum_probs=124.7
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC------------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGC------------ 249 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~------------ 249 (772)
++.+-+|+++.|.+..++.|+..+... ..++.+|||||+|+|||++|+++++.+.+
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 456678999999999999998888641 23456899999999999999999998732
Q ss_pred ------------eEEEEechhhhhhcccchHHHHHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHH
Q 044198 250 ------------YFLCINGPEIMSKMAGESESNLREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQL 313 (772)
Q Consensus 250 ------------~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 313 (772)
.++.+++.+ ...-..++.+...... ....|++|||+|.+.. ...+.|
T Consensus 75 ~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-----------~A~NAL 137 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-----------EAFNAL 137 (535)
T ss_pred HHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHH
Confidence 122222211 0012345555543221 2234999999988742 335678
Q ss_pred HHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCc
Q 044198 314 LTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFV 392 (772)
Q Consensus 314 ~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 392 (772)
+..++... ..+.+|.+|+.+..+.+++++ |. ..++|..++.++....++..+....+. ++..+..++....| .
T Consensus 138 LK~LEEpp--~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-d 211 (535)
T PRK08451 138 LKTLEEPP--SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-S 211 (535)
T ss_pred HHHHhhcC--CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 88887653 346666677777899999998 75 468999999988888777655433222 22346667776655 5
Q ss_pred hhhHHHHHHHHH
Q 044198 393 GADLAALCTEGA 404 (772)
Q Consensus 393 ~~dl~~l~~~a~ 404 (772)
.+++..++..+.
T Consensus 212 lR~alnlLdqai 223 (535)
T PRK08451 212 LRDTLTLLDQAI 223 (535)
T ss_pred HHHHHHHHHHHH
Confidence 556666665544
No 291
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.00 E-value=2.1e-09 Score=121.23 Aligned_cols=144 Identities=24% Similarity=0.359 Sum_probs=91.8
Q ss_pred cccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhC-----------------
Q 044198 459 VRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQ----------------- 521 (772)
Q Consensus 459 v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~----------------- 521 (772)
..++++.|+..+++.+...+ ....+++|+||||||||+++++++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 36788999988876665432 2346799999999999999999997541
Q ss_pred -----------CcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHH
Q 044198 522 -----------ANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLT 590 (772)
Q Consensus 522 -----------~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~ 590 (772)
.||.....+......+|.....-...+..|.. .+|||||++.+ ...+++.|++
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~-------------~~~~~~~L~~ 317 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEF-------------KRSVLDALRE 317 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhC-------------CHHHHHHHHH
Confidence 12221111111111122111111112334433 59999999887 3567788888
Q ss_pred HhcCCC-----------CCCcEEEEeecCCC------C-----------------CCCccccCCCCccccccCCCCCHH
Q 044198 591 EMDGLS-----------AKKTVFVIGATNRP------D-----------------MIDPALLRPGRLDQLIYIPLPDEH 635 (772)
Q Consensus 591 ~ld~~~-----------~~~~v~vi~aTn~~------~-----------------~ld~allrpgRf~~~i~~~~p~~~ 635 (772)
.|+... -..++.+|+|+|.- + .|..+++. |||.++.++.++.+
T Consensus 318 ~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 318 PIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 886432 12478899999852 1 47778887 99999999977544
No 292
>PRK06620 hypothetical protein; Validated
Probab=99.00 E-value=4.6e-09 Score=106.18 Aligned_cols=131 Identities=16% Similarity=0.308 Sum_probs=87.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCch
Q 044198 224 KGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHG 303 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~ 303 (772)
..++||||||||||+|++++++..+..++. .... ....+ ....+++|||+|.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~-----~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL-----EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH-----hcCCEEEEeccccch--------
Confidence 679999999999999999999887653322 1110 00111 123689999999441
Q ss_pred hhHHHHHHHHHHHhhcccccCceEEEEeeCCCCC--CChhhhccCCce--eEEEeCCCCHHHHHHHHHHHhcc--CCccc
Q 044198 304 EVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNS--IDPALRRSGRFD--KEIDIGVPDEVGRLEVLRIHTKN--MKLAE 377 (772)
Q Consensus 304 ~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~--ld~al~r~gRf~--~~i~i~~p~~~~r~~Il~~~~~~--~~l~~ 377 (772)
. ..|..+++.....+..++++++.+|.. + |++++ |+. ..+.+..|+.+.+..+++..... +.+.+
T Consensus 99 ---~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ 169 (214)
T PRK06620 99 ---E---PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISR 169 (214)
T ss_pred ---H---HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 0 245566665555666777777766653 5 78888 775 46899999999999999877653 33433
Q ss_pred ccchhHHHHHhcC
Q 044198 378 DVNLETVARETHG 390 (772)
Q Consensus 378 ~~~l~~la~~t~g 390 (772)
+ .++.++....+
T Consensus 170 e-v~~~L~~~~~~ 181 (214)
T PRK06620 170 Q-IIDFLLVNLPR 181 (214)
T ss_pred H-HHHHHHHHccC
Confidence 3 35666666544
No 293
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.00 E-value=8.9e-09 Score=108.55 Aligned_cols=189 Identities=20% Similarity=0.314 Sum_probs=114.8
Q ss_pred ceEEeCCCCCchhHHHHHHHHHhCC-cEEE--Eec-----ccchhc---ccccc-----h-HHHHHHH----HHHHhCCC
Q 044198 498 GVLFYGPPGCGKTLLAKAIANECQA-NFIS--IKG-----PELLTM---WFGES-----E-ANVRDVF----DKARQSAP 556 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~~~-~~i~--v~~-----~~l~~~---~vg~s-----e-~~i~~vf----~~a~~~~p 556 (772)
.++|+||+|+|||++++.++..+.. .+.. +.. .+++.. ..|.. . ...+.+. .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4889999999999999999998752 2221 111 111111 11221 1 1112222 22335567
Q ss_pred eEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCC-CCCCcEEEEeecCCCC---CCC-c---cccCCCCcccccc
Q 044198 557 CVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGL-SAKKTVFVIGATNRPD---MID-P---ALLRPGRLDQLIY 628 (772)
Q Consensus 557 ~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~-~~~~~v~vi~aTn~~~---~ld-~---allrpgRf~~~i~ 628 (772)
.++++||++.+.. ...+.+ ..|-.. ......+.|..+..|+ .+. + .+.+ |+...+.
T Consensus 125 ~vliiDe~~~l~~-------------~~~~~l-~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~ 188 (269)
T TIGR03015 125 ALLVVDEAQNLTP-------------ELLEEL-RMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCH 188 (269)
T ss_pred eEEEEECcccCCH-------------HHHHHH-HHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeee
Confidence 8999999998731 122222 222221 1122222222233333 222 1 2333 7778899
Q ss_pred CCCCCHHHHHHHHHHhhccCCC-----CCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcc
Q 044198 629 IPLPDEHSRLQIFKSCLRKSPV-----SKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAA 703 (772)
Q Consensus 629 ~~~p~~~~r~~Il~~~~~~~~~-----~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 703 (772)
+++.+.++..+++...++..+. -.+..++.|.+.+.|.. +.|..+|..|...|..+..
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~---------------- 251 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEK---------------- 251 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCC----------------
Confidence 9999999999999988865432 13456788899999986 5599999999888876532
Q ss_pred cccccccHHHHHHHHhhCC
Q 044198 704 GEVAEIKKEHFEESMKYAR 722 (772)
Q Consensus 704 ~~~~~i~~~~~~~al~~~~ 722 (772)
..|+.++++.++..++
T Consensus 252 ---~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 252 ---REIGGEEVREVIAEID 267 (269)
T ss_pred ---CCCCHHHHHHHHHHhh
Confidence 2699999999998754
No 294
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.99 E-value=1.3e-08 Score=117.24 Aligned_cols=193 Identities=19% Similarity=0.207 Sum_probs=126.1
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEe------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCIN------ 255 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~------ 255 (772)
++.+-+|+++.|.+..++.|+.++..- ..+..+||+||+|+|||++|+.+|+.+.+.....+
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 445678999999999999999888641 23567999999999999999999998865321111
Q ss_pred -------chhhhhhc----------ccchHHHHHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHHH
Q 044198 256 -------GPEIMSKM----------AGESESNLREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLL 314 (772)
Q Consensus 256 -------~~~~~~~~----------~g~~~~~l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~ 314 (772)
|..+.... .......++.+...+.. ....|++|||+|.+.. ...+.|+
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a~naLL 153 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AAFNALL 153 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HHHHHHH
Confidence 11111100 00123456666665542 2346999999998842 2346677
Q ss_pred HHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCch
Q 044198 315 TLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVG 393 (772)
Q Consensus 315 ~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~ 393 (772)
..++... ..+.+|.+|+..+.+.+.+++ |+. .++|..++.++....++..++..... +...++.++..+.| ..
T Consensus 154 KtLEePp--~~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dl 227 (598)
T PRK09111 154 KTLEEPP--PHVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SV 227 (598)
T ss_pred HHHHhCC--CCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 7776543 346666677777778888887 764 58999999999888887765443322 22245666666655 34
Q ss_pred hhHHHHHHHH
Q 044198 394 ADLAALCTEG 403 (772)
Q Consensus 394 ~dl~~l~~~a 403 (772)
.++..++..+
T Consensus 228 r~al~~Ldkl 237 (598)
T PRK09111 228 RDGLSLLDQA 237 (598)
T ss_pred HHHHHHHHHH
Confidence 4544444443
No 295
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=1.4e-08 Score=117.91 Aligned_cols=181 Identities=19% Similarity=0.274 Sum_probs=119.3
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEE-------E
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLC-------I 254 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~-------v 254 (772)
++.+-.|+++.|.+..++.|+.++... ....++||+||+|+|||++|+++|+.+.+.... -
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 345678899999999999998888752 124579999999999999999999998652110 0
Q ss_pred ech-----------hhh--hhcccchHHHHHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHh
Q 044198 255 NGP-----------EIM--SKMAGESESNLREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLM 317 (772)
Q Consensus 255 ~~~-----------~~~--~~~~g~~~~~l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~ll 317 (772)
.|. ++. ..........++.++..+.. ....|++|||+|.+.. ...+.|+..+
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-----------~a~naLLK~L 145 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-----------AAFNALLKTL 145 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-----------HHHHHHHHHH
Confidence 010 000 01112234566777765542 2345999999998742 2346778888
Q ss_pred hcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhcc--CCcccccchhHHHHHhcCC
Q 044198 318 DGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKN--MKLAEDVNLETVARETHGF 391 (772)
Q Consensus 318 d~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~--~~l~~~~~l~~la~~t~g~ 391 (772)
+.. ...+++|++|+.++.+-+.+++ |+. .++|..++.++....+...... ..+..+ .+..++..+.|-
T Consensus 146 EeP--p~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~-al~~La~~s~G~ 215 (620)
T PRK14948 146 EEP--PPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPE-ALTLVAQRSQGG 215 (620)
T ss_pred hcC--CcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCCC
Confidence 753 3457777778778888889987 764 4788888888777666654433 233222 356666666553
No 296
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.97 E-value=2.9e-09 Score=99.46 Aligned_cols=128 Identities=36% Similarity=0.512 Sum_probs=81.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCe---EEEEechhhhhh--------------cccchHHHHHHHHHHHHHcCCce
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCY---FLCINGPEIMSK--------------MAGESESNLREAFNVAEKNAPSI 285 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~---~~~v~~~~~~~~--------------~~g~~~~~l~~~f~~a~~~~p~i 285 (772)
+..++|+||||||||++++.++..+... ++.+++...... .........+.+++.+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999998764 777776543221 12334556677888888877899
Q ss_pred EEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCC-CCCCChhhhccCCceeEEEeCCC
Q 044198 286 IFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNR-PNSIDPALRRSGRFDKEIDIGVP 357 (772)
Q Consensus 286 l~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~-~~~ld~al~r~gRf~~~i~i~~p 357 (772)
+++||++.+......... ...................+|+++|. ....+..+++ |++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEALL-----LLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHHH-----HhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 999999988643221000 00000001111223456788888886 3344455554 78877776544
No 297
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=9.2e-09 Score=114.24 Aligned_cols=175 Identities=17% Similarity=0.247 Sum_probs=112.5
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY----------- 250 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~----------- 250 (772)
++.+.+|++|.|.+..++.|+.++... ..+..+||+||||+||||+|+++|+.+.+.
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 456778999999999999998887641 235569999999999999999999988652
Q ss_pred ---------------------EEEEechhhhhhcccchHHHHHHHHHHHH----HcCCceEEeccccccccCCCCCchhh
Q 044198 251 ---------------------FLCINGPEIMSKMAGESESNLREAFNVAE----KNAPSIIFIDEIDSIAPKREKTHGEV 305 (772)
Q Consensus 251 ---------------------~~~v~~~~~~~~~~g~~~~~l~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~ 305 (772)
++.+++.+ ......++.+.+.+. .....+++|||+|.+..
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------- 141 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------- 141 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------
Confidence 11111100 011234555444332 12335999999998842
Q ss_pred HHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCc-ccccchhHH
Q 044198 306 EKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKL-AEDVNLETV 384 (772)
Q Consensus 306 ~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l-~~~~~l~~l 384 (772)
.-.+.|+..++... ...++|.+|+.+..+-+++++ |.. .+++..++.++....++...+.... .++..++.+
T Consensus 142 --~~~~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l 214 (397)
T PRK14955 142 --AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLI 214 (397)
T ss_pred --HHHHHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 12345666665432 345556666667788888887 554 4888989888887777765543222 122235566
Q ss_pred HHHhcC
Q 044198 385 ARETHG 390 (772)
Q Consensus 385 a~~t~g 390 (772)
+..+.|
T Consensus 215 ~~~s~g 220 (397)
T PRK14955 215 GRKAQG 220 (397)
T ss_pred HHHcCC
Confidence 666554
No 298
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.96 E-value=2e-09 Score=113.28 Aligned_cols=66 Identities=36% Similarity=0.547 Sum_probs=46.6
Q ss_pred ccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhC--CcEEEEecccchhc
Q 044198 462 ADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLTM 535 (772)
Q Consensus 462 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~--~~~i~v~~~~l~~~ 535 (772)
+.++|+.++++...-.+.. . +.+.-..+++||.||||||||.||-++|.++| .||+.++++++++.
T Consensus 24 ~GlVGQ~~AReAagiiv~m-------I-k~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~ 91 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDM-------I-KEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSS 91 (398)
T ss_dssp TTEES-HHHHHHHHHHHHH-------H-HTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BT
T ss_pred ccccChHHHHHHHHHHHHH-------H-hcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeec
Confidence 5688999998876544332 1 11334578899999999999999999999996 79999999988544
No 299
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.96 E-value=1.4e-08 Score=110.16 Aligned_cols=153 Identities=22% Similarity=0.402 Sum_probs=105.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccC
Q 044198 223 PKGILLHGPPGTGKTLLARAIANET-----GCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPK 297 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l-----~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~ 297 (772)
..+++||||+|+|||+|++++++.. +..++++...++...++......--.-|+.-. .-.+++|||++++..+
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 4579999999999999999999876 34578888777766655443333334455444 3458999999999765
Q ss_pred CCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCC---CCChhhhccCCc--eeEEEeCCCCHHHHHHHHHHHhcc
Q 044198 298 REKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPN---SIDPALRRSGRF--DKEIDIGVPDEVGRLEVLRIHTKN 372 (772)
Q Consensus 298 ~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~---~ld~al~r~gRf--~~~i~i~~p~~~~r~~Il~~~~~~ 372 (772)
.. ..+.+...++.+...+.-+++.+-.+|. .+.|.|++ || ...+++.+|+.+.|..||+.....
T Consensus 191 ~~---------~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~ 259 (408)
T COG0593 191 ER---------TQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAED 259 (408)
T ss_pred hh---------HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHh
Confidence 32 2455666666666666656665556664 45689988 76 466799999999999999985543
Q ss_pred --CCcccccchhHHHHHhc
Q 044198 373 --MKLAEDVNLETVARETH 389 (772)
Q Consensus 373 --~~l~~~~~l~~la~~t~ 389 (772)
+.+.++ .+..++....
T Consensus 260 ~~~~i~~e-v~~~la~~~~ 277 (408)
T COG0593 260 RGIEIPDE-VLEFLAKRLD 277 (408)
T ss_pred cCCCCCHH-HHHHHHHHhh
Confidence 444433 3455555443
No 300
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.95 E-value=1e-09 Score=107.99 Aligned_cols=46 Identities=33% Similarity=0.510 Sum_probs=35.4
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 044198 188 YEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG 248 (772)
Q Consensus 188 ~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~ 248 (772)
|++|.|++..+..+.-+..- ..++||+||||||||++|+.+...++
T Consensus 2 f~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 67899999988887654432 46899999999999999999998763
No 301
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=1.9e-08 Score=116.04 Aligned_cols=181 Identities=17% Similarity=0.264 Sum_probs=115.6
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEE---------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFL--------- 252 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~--------- 252 (772)
+..+-+|++|.|.+..++.|+.++... ..+..+||+||+||||||+|+.+|+.+.+.-.
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 346678999999999999998877641 23456999999999999999999999866210
Q ss_pred --E-----Eechhhhh-------hccc---chHHHHHHHHHHH----HHcCCceEEeccccccccCCCCCchhhHHHHHH
Q 044198 253 --C-----INGPEIMS-------KMAG---ESESNLREAFNVA----EKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVS 311 (772)
Q Consensus 253 --~-----v~~~~~~~-------~~~g---~~~~~l~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 311 (772)
. -.|..+.. ...+ .....++.+.+.. ......|++|||+|.+.. ...+
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-----------~a~n 145 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-----------AAFN 145 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-----------HHHH
Confidence 0 00000100 0011 1123455544433 223345999999988842 1245
Q ss_pred HHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCc-ccccchhHHHHHhcC
Q 044198 312 QLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKL-AEDVNLETVARETHG 390 (772)
Q Consensus 312 ~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l-~~~~~l~~la~~t~g 390 (772)
.|+..++... ..+++|.+|+.+..+-+.+++ |. ..++|..++.++....++..++...+ .++..++.++..+.|
T Consensus 146 aLLK~LEePp--~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G 220 (620)
T PRK14954 146 AFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG 220 (620)
T ss_pred HHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 6777776543 245566666777888888887 55 35899999998887777765543222 123346677777655
No 302
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.94 E-value=8.4e-09 Score=111.90 Aligned_cols=128 Identities=30% Similarity=0.443 Sum_probs=89.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh--hcccchHHHHH------------HHHHHHHHcCCceEEe
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS--KMAGESESNLR------------EAFNVAEKNAPSIIFI 288 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~--~~~g~~~~~l~------------~~f~~a~~~~p~il~i 288 (772)
..++||-||||||||++++.+|..++.+++.++|...+. ...|...-... -+|.... +++++
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~ 118 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLL 118 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEE
Confidence 578999999999999999999999999999999854322 11222111110 0111111 39999
Q ss_pred ccccccccCCCCCchhhHHHHHHHHHHHhhc----------ccccCceEEEEeeCCC-----CCCChhhhccCCceeEEE
Q 044198 289 DEIDSIAPKREKTHGEVEKRIVSQLLTLMDG----------MKSRAHVMVIGATNRP-----NSIDPALRRSGRFDKEID 353 (772)
Q Consensus 289 DEid~l~~~~~~~~~~~~~~v~~~L~~lld~----------~~~~~~v~vI~atn~~-----~~ld~al~r~gRf~~~i~ 353 (772)
|||+...+ .+.+.|+..|+. +.-...+++|+|+|+. ..+++++++ ||...+.
T Consensus 119 DEInra~p-----------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~ 185 (329)
T COG0714 119 DEINRAPP-----------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIY 185 (329)
T ss_pred eccccCCH-----------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEe
Confidence 99986643 456778888875 3334678899999953 578899998 9988899
Q ss_pred eCCCCHHH-HHHHHH
Q 044198 354 IGVPDEVG-RLEVLR 367 (772)
Q Consensus 354 i~~p~~~~-r~~Il~ 367 (772)
++.|+.++ ...++.
T Consensus 186 v~yp~~~~e~~~i~~ 200 (329)
T COG0714 186 VDYPDSEEEERIILA 200 (329)
T ss_pred cCCCCchHHHHHHHH
Confidence 99995444 444443
No 303
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.94 E-value=1.3e-08 Score=113.92 Aligned_cols=204 Identities=19% Similarity=0.275 Sum_probs=137.8
Q ss_pred CceEEeCCCCCchhHHHHHHHHHh----------CCcEEEEecccchhc----------ccccch------HHHHHHHHH
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANEC----------QANFISIKGPELLTM----------WFGESE------ANVRDVFDK 550 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~----------~~~~i~v~~~~l~~~----------~vg~se------~~i~~vf~~ 550 (772)
..+.+.|-||||||.++..+.+.+ .+.++.|++-.+.+. +-|+.. ..+..-|..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 358899999999999999998865 367888998776543 223321 123333432
Q ss_pred H-HhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccC--CCCcc-cc
Q 044198 551 A-RQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLR--PGRLD-QL 626 (772)
Q Consensus 551 a-~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr--pgRf~-~~ 626 (772)
+ ....++|++|||.|.|+.+. ..++..|+.+-. .++.+++||+..|..+....-+.. .+|++ ..
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr~----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTRS----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred CCCCCCCEEEEeccHHHHhccc----------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 1 23457999999999998653 345555554433 356789999999987765554441 23776 78
Q ss_pred ccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHH--HHHHHHHHHHHHHHHHHhhhhccCCCCCCccc
Q 044198 627 IYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADIT--EICQRACKCAIREEIEKDIKKGQRENPEGAAG 704 (772)
Q Consensus 627 i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~--~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 704 (772)
|.|.+++.++..+|+...+.....-...-++-.|+.-...||.--+ .+|+.|+..|-.+... . + ..
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~-~----k-------~~ 638 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVK-G----K-------LA 638 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhccc-c----c-------cc
Confidence 9999999999999999999776433333455555655566664444 4999999988877651 1 0 01
Q ss_pred ccccccHHHHHHHHhhCCCC
Q 044198 705 EVAEIKKEHFEESMKYARRS 724 (772)
Q Consensus 705 ~~~~i~~~~~~~al~~~~~s 724 (772)
....|+.-|+.+|+.++..+
T Consensus 639 ~~q~v~~~~v~~Ai~em~~~ 658 (767)
T KOG1514|consen 639 VSQLVGILHVMEAINEMLAS 658 (767)
T ss_pred ccceeehHHHHHHHHHHhhh
Confidence 22368888888888887443
No 304
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.94 E-value=5e-09 Score=115.43 Aligned_cols=131 Identities=21% Similarity=0.305 Sum_probs=82.5
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhCC--cEEEEe-----cccchhcccccc-hHHH--HHHHHHHHhC---CCeEEEE
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQA--NFISIK-----GPELLTMWFGES-EANV--RDVFDKARQS---APCVLFF 561 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~~--~~i~v~-----~~~l~~~~vg~s-e~~i--~~vf~~a~~~---~p~ilfi 561 (772)
...++||+||||||||++|++++...+. +|..+. .+++ +|.. -... ..-|...... ...++|+
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DL----fG~l~i~~~~~~g~f~r~~~G~L~~A~lLfL 113 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEV----FGPLSIQALKDEGRYQRLTSGYLPEAEIVFL 113 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHh----cCcHHHhhhhhcCchhhhcCCccccccEEee
Confidence 3577999999999999999999987643 333222 2233 2321 0111 1123222211 2249999
Q ss_pred cCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC--------CCCcEEEEeecCCCC---CCCccccCCCCccccccCC
Q 044198 562 DELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS--------AKKTVFVIGATNRPD---MIDPALLRPGRLDQLIYIP 630 (772)
Q Consensus 562 DEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~--------~~~~v~vi~aTn~~~---~ld~allrpgRf~~~i~~~ 630 (772)
|||..+ ...+.+.||..|+.-. .....++++|||... ...+|++- ||-..+.+|
T Consensus 114 DEI~ra-------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp 178 (498)
T PRK13531 114 DEIWKA-------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLD 178 (498)
T ss_pred cccccC-------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECC
Confidence 999754 4678999999995321 112245566667432 23458887 998899999
Q ss_pred CCC-HHHHHHHHHHh
Q 044198 631 LPD-EHSRLQIFKSC 644 (772)
Q Consensus 631 ~p~-~~~r~~Il~~~ 644 (772)
+|+ .++-.+|+...
T Consensus 179 ~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 179 KVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCchHHHHHHHHcc
Confidence 997 56668888764
No 305
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.94 E-value=1.1e-08 Score=111.84 Aligned_cols=140 Identities=26% Similarity=0.404 Sum_probs=84.4
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----e--EEEEec----h
Q 044198 189 EDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGC-----Y--FLCING----P 257 (772)
Q Consensus 189 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~-----~--~~~v~~----~ 257 (772)
+++.+-+..++.+...+. ..++++|+||||||||++|+.+|..+.. . .+.+.. .
T Consensus 175 ~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 175 NDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 445555555555544443 2568999999999999999999998742 1 122221 2
Q ss_pred hhhhhcc----cc--hHHHHHHHHHHHHH--cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhh-----------
Q 044198 258 EIMSKMA----GE--SESNLREAFNVAEK--NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMD----------- 318 (772)
Q Consensus 258 ~~~~~~~----g~--~~~~l~~~f~~a~~--~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld----------- 318 (772)
+++..+. +- ....+..+.+.|.. ..|.++||||++..-..+ +...+..+++
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k----------iFGel~~lLE~~~rg~~~~v~ 309 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK----------VFGEVMMLMEHDKRGENWSVP 309 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH----------hhhhhhhhcccccccccccee
Confidence 2322211 10 01123334455544 357899999998654321 2222233332
Q ss_pred ---------cccccCceEEEEeeCCCC----CCChhhhccCCceeEEEeCC
Q 044198 319 ---------GMKSRAHVMVIGATNRPN----SIDPALRRSGRFDKEIDIGV 356 (772)
Q Consensus 319 ---------~~~~~~~v~vI~atn~~~----~ld~al~r~gRf~~~i~i~~ 356 (772)
.+.-..++.+|||||..+ .+|.|++| ||.. |++.+
T Consensus 310 l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 310 LTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFSF-IDIEP 357 (459)
T ss_pred eeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhhe-EEecC
Confidence 233346899999999986 79999999 8865 55554
No 306
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.93 E-value=2.4e-09 Score=117.29 Aligned_cols=196 Identities=26% Similarity=0.367 Sum_probs=122.4
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccc-
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPEL- 532 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l- 532 (772)
...++++|.|.......+.+.... .-.....+|++|.+||||-.+|+++.+.+ +.||+.+||..+
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 345678888877766665544432 22345679999999999999999999887 579999999554
Q ss_pred --------hhc----ccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC----
Q 044198 533 --------LTM----WFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS---- 596 (772)
Q Consensus 533 --------~~~----~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~---- 596 (772)
++. |.|.....-..+|+.|... -||+|||..+ .-.++..||..|..-+
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-------------pl~LQaKLLRVLQEkei~rv 372 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-------------PLPLQAKLLRVLQEKEIERV 372 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-------------CHHHHHHHHHHHhhceEEec
Confidence 221 3333333244577777665 8999999777 3567888999887531
Q ss_pred -----CCCcEEEEeecCCC--CCCCccccCCC---CccccccCCCCCHHHHH----HHHHHhh----ccCCCC----Ccc
Q 044198 597 -----AKKTVFVIGATNRP--DMIDPALLRPG---RLDQLIYIPLPDEHSRL----QIFKSCL----RKSPVS----KDI 654 (772)
Q Consensus 597 -----~~~~v~vi~aTn~~--~~ld~allrpg---Rf~~~i~~~~p~~~~r~----~Il~~~~----~~~~~~----~~~ 654 (772)
-.-+|-||+|||+. +++...-+|.. |++ ++.+..|...+|. .+...++ ++++-. ++.
T Consensus 373 G~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 373 GGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 12468999999983 23333222211 444 5666666555553 2223333 333222 222
Q ss_pred cHHHHHHHc-CCCCHHHHHHHHHHHHHH
Q 044198 655 DLKAIAKYT-HGFSGADITEICQRACKC 681 (772)
Q Consensus 655 ~~~~la~~~-~g~sg~di~~l~~~a~~~ 681 (772)
-+..|.++. .| +-++|++++..|...
T Consensus 452 a~~~L~~y~WPG-NVRELeNviER~v~~ 478 (560)
T COG3829 452 ALALLLRYDWPG-NVRELENVIERAVNL 478 (560)
T ss_pred HHHHHHhCCCCc-hHHHHHHHHHHHHhc
Confidence 244444433 22 559999999988763
No 307
>PRK09087 hypothetical protein; Validated
Probab=98.93 E-value=1e-08 Score=104.53 Aligned_cols=137 Identities=22% Similarity=0.316 Sum_probs=91.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCc
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTH 302 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~ 302 (772)
...++|+||+|||||+|++++++..+.. +++..++.. .++..... .+++|||++.+...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~-----------~~~~~~~~---~~l~iDDi~~~~~~----- 102 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGS-----------DAANAAAE---GPVLIEDIDAGGFD----- 102 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcch-----------HHHHhhhc---CeEEEECCCCCCCC-----
Confidence 3459999999999999999999876654 333322211 11111111 37999999976211
Q ss_pred hhhHHHHHHHHHHHhhcccccCceEEEEeeCCCC---CCChhhhccCCce--eEEEeCCCCHHHHHHHHHHHhccC--Cc
Q 044198 303 GEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPN---SIDPALRRSGRFD--KEIDIGVPDEVGRLEVLRIHTKNM--KL 375 (772)
Q Consensus 303 ~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~---~ld~al~r~gRf~--~~i~i~~p~~~~r~~Il~~~~~~~--~l 375 (772)
...|.++++...+....++++++.+|. ...+.+++ ||. ..+++..|+.+.|.++++...... .+
T Consensus 103 -------~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 -------ETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred -------HHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 134667777666666667777766664 23678888 764 779999999999999999887543 33
Q ss_pred ccccchhHHHHHhcC
Q 044198 376 AEDVNLETVARETHG 390 (772)
Q Consensus 376 ~~~~~l~~la~~t~g 390 (772)
.++ .++.+++...+
T Consensus 174 ~~e-v~~~La~~~~r 187 (226)
T PRK09087 174 DPH-VVYYLVSRMER 187 (226)
T ss_pred CHH-HHHHHHHHhhh
Confidence 333 46677776653
No 308
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=4.4e-09 Score=113.67 Aligned_cols=154 Identities=20% Similarity=0.219 Sum_probs=106.0
Q ss_pred ccccccc-hHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcE--------------
Q 044198 460 RWADIGG-LDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANF-------------- 524 (772)
Q Consensus 460 ~~~~i~g-~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~-------------- 524 (772)
.|+.|.| ++.+.+.|...+.. -+.+..+||+||+|+|||++|+++|..+-+.-
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 3777777 88888888877642 12355689999999999999999998863210
Q ss_pred --EEEecccchhc-cccc--chHHHHHHHHHHH----hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCC
Q 044198 525 --ISIKGPELLTM-WFGE--SEANVRDVFDKAR----QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGL 595 (772)
Q Consensus 525 --i~v~~~~l~~~-~vg~--se~~i~~vf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~ 595 (772)
..-+.+|+.-- .-|. +-..++++-+.+. .....|++|||+|.+ +....|.||..|+.
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-------------~~~a~NaLLK~LEE- 136 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-------------TASAANSLLKFLEE- 136 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-------------CHHHHHHHHHHhcC-
Confidence 00001121100 0011 1235666655443 233469999999988 35678899999996
Q ss_pred CCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHH
Q 044198 596 SAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKS 643 (772)
Q Consensus 596 ~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~ 643 (772)
+..++++|.+|+.+..|-|.+.+ |+. .++|++|+.++..++++.
T Consensus 137 -Pp~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 -PSGGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred -CCCCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 34566777788888899999987 986 899999999888777764
No 309
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.92 E-value=5.2e-09 Score=101.80 Aligned_cols=112 Identities=24% Similarity=0.364 Sum_probs=76.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC----eEEEEechhhhhhcccchHHHHHHHHHHH----HHcCCceEEecccccc
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGC----YFLCINGPEIMSKMAGESESNLREAFNVA----EKNAPSIIFIDEIDSI 294 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~----~~~~v~~~~~~~~~~g~~~~~l~~~f~~a----~~~~p~il~iDEid~l 294 (772)
...+||+||+|||||.+|+++|+.+.. +++.++++++... .+....+...+..+ ......|+|+||||.+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 456999999999999999999999985 8999999887651 11111122222111 1111239999999999
Q ss_pred ccCCCCCchhhHHHHHHHHHHHhhccc---------ccCceEEEEeeCCCC
Q 044198 295 APKREKTHGEVEKRIVSQLLTLMDGMK---------SRAHVMVIGATNRPN 336 (772)
Q Consensus 295 ~~~~~~~~~~~~~~v~~~L~~lld~~~---------~~~~v~vI~atn~~~ 336 (772)
.+......+.....+.+.|+.++++-. .-.++++|+|+|--.
T Consensus 81 ~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 81 HPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp SHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 986444444455678888999987522 125789999998653
No 310
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.92 E-value=9.9e-09 Score=100.11 Aligned_cols=182 Identities=19% Similarity=0.242 Sum_probs=104.0
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh-C----CcEEEEeccc
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC-Q----ANFISIKGPE 531 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~-~----~~~i~v~~~~ 531 (772)
....+.||+|.++....|.-.... ..-.+++|.|||||||||.+.++|+++ | -.++.+++++
T Consensus 22 rP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd 88 (333)
T KOG0991|consen 22 RPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD 88 (333)
T ss_pred CchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc
Confidence 344568999999888777644322 234569999999999999999999886 3 2356777776
Q ss_pred chhcccccchHHHHHHHHHHHh-CCC---eEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeec
Q 044198 532 LLTMWFGESEANVRDVFDKARQ-SAP---CVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGAT 607 (772)
Q Consensus 532 l~~~~vg~se~~i~~vf~~a~~-~~p---~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 607 (772)
-.+- +.-++--..|..-+- .+| .|+++||+|++. .-....|-..|+-..+..+ +..++
T Consensus 89 eRGI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT-------------~gAQQAlRRtMEiyS~ttR--FalaC 150 (333)
T KOG0991|consen 89 ERGI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT-------------AGAQQALRRTMEIYSNTTR--FALAC 150 (333)
T ss_pred cccc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhh-------------hHHHHHHHHHHHHHcccch--hhhhh
Confidence 3221 112222233433222 222 699999999983 3345566677775554433 45566
Q ss_pred CCCCCCCccccCCCCccccccCCCCCHHHH-HHHHHHhh-ccCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 044198 608 NRPDMIDPALLRPGRLDQLIYIPLPDEHSR-LQIFKSCL-RKSPVSKDIDLKAIAKYTHGFSGADITEICQR 677 (772)
Q Consensus 608 n~~~~ld~allrpgRf~~~i~~~~p~~~~r-~~Il~~~~-~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~ 677 (772)
|..+.|-+.+.+ |+- ++.|...+..+. ..++...- .+.+. .+..++.+.-.++| |+++.++.
T Consensus 151 N~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~y-t~dgLeaiifta~G----DMRQalNn 214 (333)
T KOG0991|consen 151 NQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNY-TDDGLEAIIFTAQG----DMRQALNN 214 (333)
T ss_pred cchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCC-CcchHHHhhhhccc----hHHHHHHH
Confidence 766665554544 554 333443433332 22222211 22233 23446666655554 66665543
No 311
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.91 E-value=2.8e-08 Score=103.02 Aligned_cols=208 Identities=16% Similarity=0.283 Sum_probs=123.9
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---------CeEEEEechh
Q 044198 188 YEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG---------CYFLCINGPE 258 (772)
Q Consensus 188 ~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~---------~~~~~v~~~~ 258 (772)
|-+..-..+.++.+.+++..|-.. ...++||+|++|.|||++++.++...+ .+++.+..+.
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~~----------Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKRH----------RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPP 105 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCccc----------CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCC
Confidence 333334455566667777776543 256799999999999999999997652 3556665422
Q ss_pred h------h----hh----c--ccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccc
Q 044198 259 I------M----SK----M--AGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKS 322 (772)
Q Consensus 259 ~------~----~~----~--~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~ 322 (772)
- . .. + .....+.-..+....+...+-+|+|||+|.++.... ...+.+++.|..+.+.+
T Consensus 106 ~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~----~~qr~~Ln~LK~L~NeL-- 179 (302)
T PF05621_consen 106 EPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY----RKQREFLNALKFLGNEL-- 179 (302)
T ss_pred CCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH----HHHHHHHHHHHHHhhcc--
Confidence 1 1 00 0 011222233445556677788999999999874322 22344555555554333
Q ss_pred cCceEEEEeeCCCC--CCChhhhccCCceeEEEeCCC-CHHHHHHHHHHHhccCCccccc--c----hhHHHHHhcCCch
Q 044198 323 RAHVMVIGATNRPN--SIDPALRRSGRFDKEIDIGVP-DEVGRLEVLRIHTKNMKLAEDV--N----LETVARETHGFVG 393 (772)
Q Consensus 323 ~~~v~vI~atn~~~--~ld~al~r~gRf~~~i~i~~p-~~~~r~~Il~~~~~~~~l~~~~--~----l~~la~~t~g~~~ 393 (772)
+..++.+|+..-.. .-|+.+.+ ||.. +.+|.- .-++...+|..+...+++.... . ...+-..+.|..|
T Consensus 180 ~ipiV~vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 180 QIPIVGVGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG 256 (302)
T ss_pred CCCeEEeccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH
Confidence 24566666543333 33788877 9976 344422 2234455666666666654322 2 2344556677665
Q ss_pred hhHHHHHHHHHHHhhhhhcccc
Q 044198 394 ADLAALCTEGAMQCIREKMDLI 415 (772)
Q Consensus 394 ~dl~~l~~~a~~~~~~~~~~~~ 415 (772)
++..++..|+..+++...+.+
T Consensus 257 -~l~~ll~~aA~~AI~sG~E~I 277 (302)
T PF05621_consen 257 -ELSRLLNAAAIAAIRSGEERI 277 (302)
T ss_pred -HHHHHHHHHHHHHHhcCCcee
Confidence 788889999999998776544
No 312
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.91 E-value=8e-09 Score=110.82 Aligned_cols=160 Identities=21% Similarity=0.320 Sum_probs=103.5
Q ss_pred CCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------eEEE-Ee
Q 044198 184 DDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGC-------YFLC-IN 255 (772)
Q Consensus 184 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~-------~~~~-v~ 255 (772)
..++|++|.|+++.+..|.-.+..|- ..+|||.|++|||||+++|++++.+.. +|.. -+
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p~-------------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDPK-------------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCCC-------------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 45789999999998888765554431 247999999999999999999887642 1210 00
Q ss_pred chhh-----hhhc-------------------ccchHHH------HHHHHHHHH---------HcCCceEEecccccccc
Q 044198 256 GPEI-----MSKM-------------------AGESESN------LREAFNVAE---------KNAPSIIFIDEIDSIAP 296 (772)
Q Consensus 256 ~~~~-----~~~~-------------------~g~~~~~------l~~~f~~a~---------~~~p~il~iDEid~l~~ 296 (772)
.++. .... .+..+.. +...|.... .....+||+||++.+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 0000 0000 0111111 111121111 11235999999998753
Q ss_pred CCCCCchhhHHHHHHHHHHHhhcc-----------cccCceEEEEeeCCCC-CCChhhhccCCceeEEEeCCCC-HHHHH
Q 044198 297 KREKTHGEVEKRIVSQLLTLMDGM-----------KSRAHVMVIGATNRPN-SIDPALRRSGRFDKEIDIGVPD-EVGRL 363 (772)
Q Consensus 297 ~~~~~~~~~~~~v~~~L~~lld~~-----------~~~~~v~vI~atn~~~-~ld~al~r~gRf~~~i~i~~p~-~~~r~ 363 (772)
.+.+.|+..|+.- ....++++|+++|+.+ .+.+++.. ||...+.+..|+ .+.+.
T Consensus 159 -----------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~ 225 (350)
T CHL00081 159 -----------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRV 225 (350)
T ss_pred -----------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHH
Confidence 3345566666431 1235789999999875 68999998 999999999997 59999
Q ss_pred HHHHHH
Q 044198 364 EVLRIH 369 (772)
Q Consensus 364 ~Il~~~ 369 (772)
+|++..
T Consensus 226 ~il~~~ 231 (350)
T CHL00081 226 KIVEQR 231 (350)
T ss_pred HHHHhh
Confidence 999865
No 313
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=3.3e-08 Score=114.94 Aligned_cols=191 Identities=20% Similarity=0.254 Sum_probs=118.9
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEE---e---
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCI---N--- 255 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v---~--- 255 (772)
++.+.+|++|.|.+..++.|+.++... ..++.+||+||+|+|||++|+.+|+.+.+....- .
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 456778999999999999998887641 1245689999999999999999999885421100 0
Q ss_pred c---hhhhhh----------cccchHHHHHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhh
Q 044198 256 G---PEIMSK----------MAGESESNLREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMD 318 (772)
Q Consensus 256 ~---~~~~~~----------~~g~~~~~l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld 318 (772)
| ..+... ........++.+.+.+.. ....|+||||+|.+.. ...+.|+..++
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~naLLk~LE 145 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFNALLKTLE 145 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHHHHHHHHh
Confidence 0 001000 001112334444433222 2345999999998742 22456777776
Q ss_pred cccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCchhhHH
Q 044198 319 GMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVGADLA 397 (772)
Q Consensus 319 ~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~ 397 (772)
... ..+++|.+++..+.+.+.+++ |+. .++|..++..+...+++.......+. +...+..++..+.| +..++.
T Consensus 146 epp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al 219 (585)
T PRK14950 146 EPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAE 219 (585)
T ss_pred cCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 543 346666667777778888877 664 48899999998888887665443321 22235666666655 444444
Q ss_pred HHHH
Q 044198 398 ALCT 401 (772)
Q Consensus 398 ~l~~ 401 (772)
..+.
T Consensus 220 ~~Le 223 (585)
T PRK14950 220 NLLQ 223 (585)
T ss_pred HHHH
Confidence 4443
No 314
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.90 E-value=3.2e-09 Score=122.54 Aligned_cols=173 Identities=20% Similarity=0.215 Sum_probs=98.4
Q ss_pred eEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-------------------CCCcEEEEeecCCC--CCCCc
Q 044198 557 CVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-------------------AKKTVFVIGATNRP--DMIDP 615 (772)
Q Consensus 557 ~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-------------------~~~~v~vi~aTn~~--~~ld~ 615 (772)
.+|||||++.|- ......|++.|+.-. -.-++.||++||+. ..+||
T Consensus 228 GtL~LDei~~L~-------------~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dp 294 (637)
T PRK13765 228 GVLFIDEINTLD-------------LESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHP 294 (637)
T ss_pred cEEEEeChHhCC-------------HHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhH
Confidence 467777777661 335566777764221 01357789999885 56789
Q ss_pred cccCCCCcc---ccccCCC--C-CHHHHHHHHHHhhccCCC---CCcccH---HHHHH----HcCC-----CCHHHHHHH
Q 044198 616 ALLRPGRLD---QLIYIPL--P-DEHSRLQIFKSCLRKSPV---SKDIDL---KAIAK----YTHG-----FSGADITEI 674 (772)
Q Consensus 616 allrpgRf~---~~i~~~~--p-~~~~r~~Il~~~~~~~~~---~~~~~~---~~la~----~~~g-----~sg~di~~l 674 (772)
+|.. ||. ..++|.. + +.+.+..+++...+.... ...++- ..|.+ .+.- ..-++|..+
T Consensus 295 dL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l 372 (637)
T PRK13765 295 ALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGL 372 (637)
T ss_pred HHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHH
Confidence 9887 775 4455552 2 356666666544432211 112332 22222 2211 336788899
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhccCCCChhhccc
Q 044198 675 CQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSDVRKYQAFANTLQQSRGFGSSAAANN 754 (772)
Q Consensus 675 ~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 754 (772)
+++|...|..+.. ..|+.+|+.+|+.. ..++.++..+.|..-.+.+. . -...-..
T Consensus 373 ~r~a~~~a~~~~~-------------------~~i~~~~v~~a~~~-~~~i~~~~~~~~l~~~~~~~----~-~~~~g~~ 427 (637)
T PRK13765 373 VRVAGDIARSEGA-------------------ELTTAEHVLEAKKI-ARSIEQQLADRYIERRKDYE----L-FVTEGGE 427 (637)
T ss_pred HHHHHHHHHhhcc-------------------ceecHHHHHHHHHh-hhhhhHHHHHHHhCCccccc----h-hhccccc
Confidence 9998877766543 25899999999843 34466555555444222111 1 1122345
Q ss_pred CCCCCcccCCCCC-CC
Q 044198 755 VIPVSSFANGDGY-GD 769 (772)
Q Consensus 755 ~~~~~~~~~~~~~-~~ 769 (772)
++.+.|+||...+ |.
T Consensus 428 vG~v~glav~g~~~G~ 443 (637)
T PRK13765 428 VGRVNGLAVMGEDSGI 443 (637)
T ss_pred eeEEEEEEEeccCceE
Confidence 6678888887655 54
No 315
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.89 E-value=3.6e-10 Score=101.84 Aligned_cols=104 Identities=32% Similarity=0.436 Sum_probs=61.1
Q ss_pred ceEEeCCCCCchhHHHHHHHHHhCCcEEEEecc-cch-hcccccc----hH-----HHHHHHHHHHhCCCeEEEEcCchh
Q 044198 498 GVLFYGPPGCGKTLLAKAIANECQANFISIKGP-ELL-TMWFGES----EA-----NVRDVFDKARQSAPCVLFFDELDS 566 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~-~l~-~~~vg~s----e~-----~i~~vf~~a~~~~p~ilfiDEid~ 566 (772)
|+||.|+||+|||++|+++|..++..|.+|... +++ +...|.. +. .-.-+| ..|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999888663 443 1112211 00 111222 14999999977
Q ss_pred hhhccCCCCCCCCchhHHHHHHHHHhcCCC---------CCCcEEEEeecCCCC-----CCCccccCCCCc
Q 044198 567 IAIQRGSSVGDGGGVDRIVNQLLTEMDGLS---------AKKTVFVIGATNRPD-----MIDPALLRPGRL 623 (772)
Q Consensus 567 l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~---------~~~~v~vi~aTn~~~-----~ld~allrpgRf 623 (772)
. ..++++.||+.|.... -.+.++||||-|..+ .|.+|++. ||
T Consensus 74 a-------------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 A-------------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S--------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred C-------------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 6 4678899999997531 235689999999866 66777776 76
No 316
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.88 E-value=8.6e-09 Score=117.92 Aligned_cols=163 Identities=20% Similarity=0.240 Sum_probs=98.3
Q ss_pred ccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc-EEEEeccc---chhc----
Q 044198 464 IGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN-FISIKGPE---LLTM---- 535 (772)
Q Consensus 464 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~-~i~v~~~~---l~~~---- 535 (772)
|.|.+.+|..+.-.+..-... ..-....+....++||+|+||||||++|++++...... |+...+++ +...
T Consensus 205 i~G~~~~k~~l~l~l~gg~~~-~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 205 IYGHEDIKKAILLLLFGGVHK-NLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred ccCcHHHHHHHHHHHhCCCcc-ccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 567788877765433221100 00001122334479999999999999999999987532 33211111 1110
Q ss_pred -ccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-----------CCCcEEE
Q 044198 536 -WFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-----------AKKTVFV 603 (772)
Q Consensus 536 -~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-----------~~~~v~v 603 (772)
..|+..-. ...+..|. ..++++||+|.+- +...+.|+..|+.-. -..++.|
T Consensus 284 ~~~g~~~~~-~G~l~~A~---~Gil~iDEi~~l~-------------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~v 346 (509)
T smart00350 284 PETREFTLE-GGALVLAD---NGVCCIDEFDKMD-------------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSV 346 (509)
T ss_pred cCcceEEec-CccEEecC---CCEEEEechhhCC-------------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEE
Confidence 00110000 00111222 2599999999983 455677888776431 1256889
Q ss_pred EeecCCCC-------------CCCccccCCCCccccccC-CCCCHHHHHHHHHHhhc
Q 044198 604 IGATNRPD-------------MIDPALLRPGRLDQLIYI-PLPDEHSRLQIFKSCLR 646 (772)
Q Consensus 604 i~aTn~~~-------------~ld~allrpgRf~~~i~~-~~p~~~~r~~Il~~~~~ 646 (772)
|||+|..+ .|++++++ |||.++.+ ..|+.+...+|.++.++
T Consensus 347 iAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 347 LAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 99999642 58899998 99975544 68999999999987653
No 317
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.88 E-value=1.4e-08 Score=117.73 Aligned_cols=132 Identities=22% Similarity=0.296 Sum_probs=93.1
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCC--cEEEEecccchhcccccch--HHHH---H-----HHHHHHhCCCeEEEEcC
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQA--NFISIKGPELLTMWFGESE--ANVR---D-----VFDKARQSAPCVLFFDE 563 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~--~~i~v~~~~l~~~~vg~se--~~i~---~-----vf~~a~~~~p~ilfiDE 563 (772)
-.|+||.|+||||||++|++++..+.. +|+.+.........+|... ..+. . ++..| .-.+||+||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDE 92 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDM 92 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccc
Confidence 467999999999999999999998754 5888775333333444321 0000 0 11111 124999999
Q ss_pred chhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-----------CCCcEEEEeecCCCC---CCCccccCCCCccccccC
Q 044198 564 LDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-----------AKKTVFVIGATNRPD---MIDPALLRPGRLDQLIYI 629 (772)
Q Consensus 564 id~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-----------~~~~v~vi~aTn~~~---~ld~allrpgRf~~~i~~ 629 (772)
|+.+ ...+++.|+..|+.-. ...++.||+|+|..+ .|.++++. ||+.++.+
T Consensus 93 i~rl-------------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~ 157 (589)
T TIGR02031 93 ANLL-------------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSL 157 (589)
T ss_pred hhhC-------------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeec
Confidence 9998 3667888999987432 124688999999765 68888998 99987777
Q ss_pred C-CCCHHHHHHHHHHhh
Q 044198 630 P-LPDEHSRLQIFKSCL 645 (772)
Q Consensus 630 ~-~p~~~~r~~Il~~~~ 645 (772)
. +|+.++|.+|++..+
T Consensus 158 ~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 158 EDVASQDLRVEIVRRER 174 (589)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 6 567888999998866
No 318
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=6.9e-08 Score=104.66 Aligned_cols=182 Identities=16% Similarity=0.192 Sum_probs=115.2
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-------EEEE-
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY-------FLCI- 254 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~-------~~~v- 254 (772)
+.+-.++++.|.++.++.+..++... ..+..+||+||+|+|||++|+.+|+.+.+. ....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 34556788999999999999888652 224569999999999999999999987541 1000
Q ss_pred ---ech-----------hhh--hh---c------ccchHHHHHHHHHHH----HHcCCceEEeccccccccCCCCCchhh
Q 044198 255 ---NGP-----------EIM--SK---M------AGESESNLREAFNVA----EKNAPSIIFIDEIDSIAPKREKTHGEV 305 (772)
Q Consensus 255 ---~~~-----------~~~--~~---~------~g~~~~~l~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~~~~ 305 (772)
.|. ++. .. . ..-....++.+.+.. ......|++|||+|.+..
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~--------- 155 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR--------- 155 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH---------
Confidence 111 100 00 0 000123344333322 223456999999998842
Q ss_pred HHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHH
Q 044198 306 EKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVA 385 (772)
Q Consensus 306 ~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la 385 (772)
...+.|+..++... .+..+|..|+.++.+.|.+++ |+ ..+.+++|+.++..++|+.......+. +..+..++
T Consensus 156 --~aanaLLk~LEEpp--~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i~ 227 (351)
T PRK09112 156 --NAANAILKTLEEPP--ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEALL 227 (351)
T ss_pred --HHHHHHHHHHhcCC--CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHHH
Confidence 23466888887643 345555567778888899988 77 479999999999999998643221111 22244555
Q ss_pred HHhcCCch
Q 044198 386 RETHGFVG 393 (772)
Q Consensus 386 ~~t~g~~~ 393 (772)
..+.|-..
T Consensus 228 ~~s~G~pr 235 (351)
T PRK09112 228 QRSKGSVR 235 (351)
T ss_pred HHcCCCHH
Confidence 55555443
No 319
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.87 E-value=1.9e-08 Score=108.04 Aligned_cols=158 Identities=22% Similarity=0.336 Sum_probs=98.4
Q ss_pred CccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------eE-------
Q 044198 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGC-------YF------- 251 (772)
Q Consensus 186 ~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~-------~~------- 251 (772)
++|..|.|+++.+..+.-.+..| ...+++|.|+||+||||+++++++.+.. ++
T Consensus 1 ~pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~ 67 (337)
T TIGR02030 1 FPFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDP 67 (337)
T ss_pred CCccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCc
Confidence 35778999999887764433222 1357999999999999999999988732 11
Q ss_pred --EEEechhh----------------hhhcccchHHH------HHHH-------HH--HHHHcCCceEEeccccccccCC
Q 044198 252 --LCINGPEI----------------MSKMAGESESN------LREA-------FN--VAEKNAPSIIFIDEIDSIAPKR 298 (772)
Q Consensus 252 --~~v~~~~~----------------~~~~~g~~~~~------l~~~-------f~--~a~~~~p~il~iDEid~l~~~~ 298 (772)
+..+|... .....+.++.. +... |+ ........+||+||++.+.+
T Consensus 68 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~-- 145 (337)
T TIGR02030 68 EMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED-- 145 (337)
T ss_pred cccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH--
Confidence 11111110 00000001111 1111 11 00011235999999998742
Q ss_pred CCCchhhHHHHHHHHHHHhhccc-----------ccCceEEEEeeCCCC-CCChhhhccCCceeEEEeCCCCH-HHHHHH
Q 044198 299 EKTHGEVEKRIVSQLLTLMDGMK-----------SRAHVMVIGATNRPN-SIDPALRRSGRFDKEIDIGVPDE-VGRLEV 365 (772)
Q Consensus 299 ~~~~~~~~~~v~~~L~~lld~~~-----------~~~~v~vI~atn~~~-~ld~al~r~gRf~~~i~i~~p~~-~~r~~I 365 (772)
.+...|++.|+.-. ...++++|+++|+.+ .+.+++.. ||...+.++.|.. ++|.+|
T Consensus 146 ---------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eI 214 (337)
T TIGR02030 146 ---------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEI 214 (337)
T ss_pred ---------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHH
Confidence 34566666664321 124689999998765 78999998 9999999999976 888999
Q ss_pred HHHH
Q 044198 366 LRIH 369 (772)
Q Consensus 366 l~~~ 369 (772)
++..
T Consensus 215 L~~~ 218 (337)
T TIGR02030 215 VERR 218 (337)
T ss_pred HHhh
Confidence 8764
No 320
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.86 E-value=5.7e-08 Score=108.94 Aligned_cols=165 Identities=27% Similarity=0.345 Sum_probs=107.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHH----HcCCceEEeccccccccCC
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAE----KNAPSIIFIDEIDSIAPKR 298 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~----~~~p~il~iDEid~l~~~~ 298 (772)
.+-+|||||||-||||||+.+|+..|..++.+|+++-.+ ......++..+.+.-. ...|.+|++||||--.
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt--~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~--- 400 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERT--APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP--- 400 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcCceEEEeccccccc--HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc---
Confidence 344899999999999999999999999999999987432 2223334433333211 2568999999998322
Q ss_pred CCCchhhHHHHHHHHHHHhhc-------ccc---------c---CceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCH
Q 044198 299 EKTHGEVEKRIVSQLLTLMDG-------MKS---------R---AHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDE 359 (772)
Q Consensus 299 ~~~~~~~~~~v~~~L~~lld~-------~~~---------~---~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~ 359 (772)
...++.++.++.. -+. + -.--+|+.||.. ..|+|+..--|...+.|.+|..
T Consensus 401 --------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~ 470 (877)
T KOG1969|consen 401 --------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQ 470 (877)
T ss_pred --------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCCh
Confidence 3455666666641 111 0 112477889854 5688876556889999999998
Q ss_pred HHHHHHHHHHhccCCcccc-cchhHHHHHhcCCchhhHHHHHHHHHHH
Q 044198 360 VGRLEVLRIHTKNMKLAED-VNLETVARETHGFVGADLAALCTEGAMQ 406 (772)
Q Consensus 360 ~~r~~Il~~~~~~~~l~~~-~~l~~la~~t~g~~~~dl~~l~~~a~~~ 406 (772)
....+-|+..+..-.+..+ ..+..+++.| ..|+..+++...+.
T Consensus 471 s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~----~~DIRsCINtLQfL 514 (877)
T KOG1969|consen 471 SRLVERLNEICHRENMRADSKALNALCELT----QNDIRSCINTLQFL 514 (877)
T ss_pred hHHHHHHHHHHhhhcCCCCHHHHHHHHHHh----cchHHHHHHHHHHH
Confidence 8877777766654333221 1344455544 34777766654433
No 321
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.86 E-value=1.2e-09 Score=98.40 Aligned_cols=104 Identities=31% Similarity=0.439 Sum_probs=59.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEEEech-hhh-----hhcccchHH-----HHHHHHHHHHHcCCceEEeccccc
Q 044198 225 GILLHGPPGTGKTLLARAIANETGCYFLCINGP-EIM-----SKMAGESES-----NLREAFNVAEKNAPSIIFIDEIDS 293 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~-~~~-----~~~~g~~~~-----~l~~~f~~a~~~~p~il~iDEid~ 293 (772)
||||.|+||+|||++++++|+.++..|..|.+. ++. +-....... .-.-+| ..|+++|||+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999888773 332 111111000 001112 24999999987
Q ss_pred cccCCCCCchhhHHHHHHHHHHHhhccc---------ccCceEEEEeeCCCC-----CCChhhhccCCc
Q 044198 294 IAPKREKTHGEVEKRIVSQLLTLMDGMK---------SRAHVMVIGATNRPN-----SIDPALRRSGRF 348 (772)
Q Consensus 294 l~~~~~~~~~~~~~~v~~~L~~lld~~~---------~~~~v~vI~atn~~~-----~ld~al~r~gRf 348 (772)
..+ +..+.|++.|...+ -..++.||||.|+.+ .|+.+++. ||
T Consensus 74 app-----------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 APP-----------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S-H-----------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CCH-----------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 654 45677888886432 124689999999875 67778776 77
No 322
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4.2e-09 Score=114.00 Aligned_cols=48 Identities=31% Similarity=0.565 Sum_probs=40.3
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC 520 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~ 520 (772)
..++.||.|++..|+.+..... ..+++|++||||||||++|+-+...+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 4578899999999999876543 36789999999999999999887655
No 323
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.84 E-value=2e-08 Score=112.93 Aligned_cols=143 Identities=26% Similarity=0.360 Sum_probs=91.1
Q ss_pred ccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc--EEEEecccch----
Q 044198 460 RWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN--FISIKGPELL---- 533 (772)
Q Consensus 460 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~--~i~v~~~~l~---- 533 (772)
++.++.|+..+++.+.- ......+++|+||||||||++++.++..+... -..+....+.
T Consensus 189 d~~~v~Gq~~~~~al~l---------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEI---------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhhhe---------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 45667777666655431 12345679999999999999999999765311 0111111110
Q ss_pred ----------------------hcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHH
Q 044198 534 ----------------------TMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTE 591 (772)
Q Consensus 534 ----------------------~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ 591 (772)
...+|.....-...+..|... +||+||++.+ ...+++.|++.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~-------------~~~~~~~L~~~ 317 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEF-------------ERRTLDALREP 317 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhC-------------CHHHHHHHHHH
Confidence 002232211122345556554 9999999776 35678888888
Q ss_pred hcCCC-----------CCCcEEEEeecCCCC---------------------CCCccccCCCCccccccCCCCCHH
Q 044198 592 MDGLS-----------AKKTVFVIGATNRPD---------------------MIDPALLRPGRLDQLIYIPLPDEH 635 (772)
Q Consensus 592 ld~~~-----------~~~~v~vi~aTn~~~---------------------~ld~allrpgRf~~~i~~~~p~~~ 635 (772)
|+.-. -..++.+|+|+|... .|..+++. |||.++.++.|+.+
T Consensus 318 LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 318 IESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred HHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 85432 135689999999742 46678887 99999999988644
No 324
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=2.5e-08 Score=107.06 Aligned_cols=133 Identities=17% Similarity=0.192 Sum_probs=96.1
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHhCCcEE-----------------EEecccchh--cc------------------
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANECQANFI-----------------SIKGPELLT--MW------------------ 536 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~~~~~i-----------------~v~~~~l~~--~~------------------ 536 (772)
+.+.++||+||+|+||+++|+++|..+.+..- .-+.+|+.- .-
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 45678999999999999999999987743210 001111110 00
Q ss_pred --cc---------cchHHHHHHHHHHH----hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcE
Q 044198 537 --FG---------ESEANVRDVFDKAR----QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTV 601 (772)
Q Consensus 537 --vg---------~se~~i~~vf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v 601 (772)
-| -+-..||++.+.+. .....|++||++|.+ +....|.||..|+ ++..++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-------------~~~AaNaLLKtLE--EPp~~t 163 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-------------NVAAANALLKTLE--EPPPGT 163 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-------------CHHHHHHHHHHhc--CCCcCc
Confidence 00 01235666655543 233469999999998 3567899999999 466788
Q ss_pred EEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHh
Q 044198 602 FVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSC 644 (772)
Q Consensus 602 ~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~ 644 (772)
++|.+|++|+.|.|.+++ |+. .+.|++|+.++..+.+...
T Consensus 164 ~fiL~t~~~~~LLpTI~S--Rcq-~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 164 VFLLVSARIDRLLPTILS--RCR-QFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEEEECChhhCcHHHHh--cCE-EEEecCCCHHHHHHHHHHc
Confidence 999999999999999998 995 9999999999998888754
No 325
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.83 E-value=3.9e-08 Score=97.82 Aligned_cols=143 Identities=20% Similarity=0.310 Sum_probs=93.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCe------------------------EEEEechhhhhhcccchHHHHHHHHHH
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETGCY------------------------FLCINGPEIMSKMAGESESNLREAFNV 277 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~~~------------------------~~~v~~~~~~~~~~g~~~~~l~~~f~~ 277 (772)
.+..+||+||+|+|||++++.+++.+... +..+... .. .-....++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQ--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cC--cCCHHHHHHHHHH
Confidence 35679999999999999999999987431 1111110 00 0122455555554
Q ss_pred HHH----cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEE
Q 044198 278 AEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEID 353 (772)
Q Consensus 278 a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~ 353 (772)
+.. ....+++|||+|.+.. ...+.|+..++... ....+|.+|+.+..+.+++++ |.. .++
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~-----------~~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~i~s--r~~-~~~ 151 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE-----------AAANALLKTLEEPP--PNTLFILITPSPEKLLPTIRS--RCQ-VLP 151 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH-----------HHHHHHHHHhcCCC--CCeEEEEEECChHhChHHHHh--hcE-Eee
Confidence 433 3456999999988743 22456777777633 345566667777899999998 664 699
Q ss_pred eCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcC
Q 044198 354 IGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHG 390 (772)
Q Consensus 354 i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g 390 (772)
+.+|+.++..++++.. + +. ...++.++..+.|
T Consensus 152 ~~~~~~~~~~~~l~~~--g--i~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 152 FPPLSEEALLQWLIRQ--G--IS-EEAAELLLALAGG 183 (188)
T ss_pred CCCCCHHHHHHHHHHc--C--CC-HHHHHHHHHHcCC
Confidence 9999999998888766 2 22 2235555555544
No 326
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.82 E-value=2.2e-08 Score=111.65 Aligned_cols=194 Identities=22% Similarity=0.320 Sum_probs=130.4
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE--E------EE
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYF--L------CI 254 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~--~------~v 254 (772)
..+-.|+++.|.+.....|+.++..- ....+.|++||.||||||+||.+|+.+++.- . +.
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 45668999999999999999988762 2245799999999999999999999987641 1 11
Q ss_pred echhhhhh----------cccchHHHHHHHHHHH----HHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcc
Q 044198 255 NGPEIMSK----------MAGESESNLREAFNVA----EKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGM 320 (772)
Q Consensus 255 ~~~~~~~~----------~~g~~~~~l~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~ 320 (772)
.|..+... -....-..+|.+.+.+ .....-|++|||+|.+.. ...+.|+..++.
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~-----------~afNALLKTLEE- 145 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK-----------QAFNALLKTLEE- 145 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH-----------HHHHHHhccccc-
Confidence 11111110 0111233455555443 334456999999998853 334666666654
Q ss_pred cccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccc-cchhHHHHHhcCCchhhHHHH
Q 044198 321 KSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAED-VNLETVARETHGFVGADLAAL 399 (772)
Q Consensus 321 ~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~-~~l~~la~~t~g~~~~dl~~l 399 (772)
....|.+|.+|..++.+++.+++ |..+ +.|...+.++-...|...+..-.+..+ .-+..+++..+| +.+|...+
T Consensus 146 -PP~hV~FIlATTe~~Kip~TIlS--Rcq~-f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalsl 220 (515)
T COG2812 146 -PPSHVKFILATTEPQKIPNTILS--RCQR-FDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSL 220 (515)
T ss_pred -CccCeEEEEecCCcCcCchhhhh--cccc-ccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHH
Confidence 34568999999999999999988 6654 677888888877777766655444333 235666666655 34677777
Q ss_pred HHHHHH
Q 044198 400 CTEGAM 405 (772)
Q Consensus 400 ~~~a~~ 405 (772)
+..+..
T Consensus 221 LDq~i~ 226 (515)
T COG2812 221 LDQAIA 226 (515)
T ss_pred HHHHHH
Confidence 776654
No 327
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.81 E-value=4.7e-08 Score=98.38 Aligned_cols=105 Identities=28% Similarity=0.267 Sum_probs=62.7
Q ss_pred CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCC-------------CCCCCccccCCC
Q 044198 555 APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNR-------------PDMIDPALLRPG 621 (772)
Q Consensus 555 ~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~-------------~~~ld~allrpg 621 (772)
-|.||||||++.| .-+.+.-|-..|+. .-.-+||+|||+ |.-+.+.++.
T Consensus 296 vPGVLFIDEVhML-------------DiEcFTyL~kalES---~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD-- 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-------------DIECFTYLHKALES---PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD-- 357 (456)
T ss_pred cCcceEeeehhhh-------------hhHHHHHHHHHhcC---CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--
Confidence 4788888888877 12334444444443 222378888886 4455556664
Q ss_pred CccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHH
Q 044198 622 RLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRA 678 (772)
Q Consensus 622 Rf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a 678 (772)
|+- +|..-+++.++.++|++...+.-.+. .+..+..|+.....-|-+-..+++.-|
T Consensus 358 Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~ 414 (456)
T KOG1942|consen 358 RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPA 414 (456)
T ss_pred hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHH
Confidence 553 66666888999999999888766655 333456666644333333333333333
No 328
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=1.3e-07 Score=109.72 Aligned_cols=175 Identities=19% Similarity=0.297 Sum_probs=118.4
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY----------- 250 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~----------- 250 (772)
++.+.+|++|.|.+..++.|+..+... ..++.+|||||+|+|||++|+.+|+.+.+.
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 445678999999999999998888641 224569999999999999999999987532
Q ss_pred --------------EEEEechhhhhhcccchHHHHHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHH
Q 044198 251 --------------FLCINGPEIMSKMAGESESNLREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQ 312 (772)
Q Consensus 251 --------------~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 312 (772)
++.+++.+ ......++.+...+.. ...-|++|||+|.+.. ...+.
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~na 140 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFNA 140 (614)
T ss_pred chHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHHH
Confidence 22222211 1123445566554432 2234999999998842 23467
Q ss_pred HHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcC
Q 044198 313 LLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHG 390 (772)
Q Consensus 313 L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g 390 (772)
|+..++... ...++|.+|+....|-+.+++ |.. .++|..++.++....++..+....+. +...+..++..+.|
T Consensus 141 LLK~LEepp--~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g 214 (614)
T PRK14971 141 FLKTLEEPP--SYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG 214 (614)
T ss_pred HHHHHhCCC--CCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 888887643 345666777777889999988 654 38999999988888877655443332 12246667766644
No 329
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.80 E-value=1.5e-08 Score=109.40 Aligned_cols=198 Identities=23% Similarity=0.291 Sum_probs=120.5
Q ss_pred ccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh----CCcEEEEecccchhc
Q 044198 460 RWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC----QANFISIKGPELLTM 535 (772)
Q Consensus 460 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~----~~~~i~v~~~~l~~~ 535 (772)
..+++.|....-+.+.+.+.. --+...++|++|++||||+.+|+++.... +.||+++||..+...
T Consensus 76 ~~~~LIG~~~~~~~~~eqik~-----------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en 144 (403)
T COG1221 76 ALDDLIGESPSLQELREQIKA-----------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSEN 144 (403)
T ss_pred hhhhhhccCHHHHHHHHHHHh-----------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcC
Confidence 455666665555555444432 11335679999999999999999998544 569999999886433
Q ss_pred -------------ccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC------
Q 044198 536 -------------WFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS------ 596 (772)
Q Consensus 536 -------------~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~------ 596 (772)
|.| ....-..+|+.|... +||+|||..+- ......||+.||...
T Consensus 145 ~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~LP-------------~~~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 145 LQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRLP-------------PEGQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred HHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhCC-------------HhHHHHHHHHHHcCceEecCC
Confidence 223 233344567777655 99999999884 445677899998732
Q ss_pred ---CCCcEEEEeecCC--CCCCCc--cccCCCCccccccCCCCCH--HHHHHHHHHhh----ccCCCCCccc----HHHH
Q 044198 597 ---AKKTVFVIGATNR--PDMIDP--ALLRPGRLDQLIYIPLPDE--HSRLQIFKSCL----RKSPVSKDID----LKAI 659 (772)
Q Consensus 597 ---~~~~v~vi~aTn~--~~~ld~--allrpgRf~~~i~~~~p~~--~~r~~Il~~~~----~~~~~~~~~~----~~~l 659 (772)
...+|-+|+|||- ++.+-. .+.+ -|+...|.+|+.-+ +++..+.+.++ ++.......+ +..|
T Consensus 208 ~~~~~~dVRli~AT~~~l~~~~~~g~dl~~-rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L 286 (403)
T COG1221 208 SQPRPVDVRLICATTEDLEEAVLAGADLTR-RLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRAL 286 (403)
T ss_pred CCCcCCCceeeeccccCHHHHHHhhcchhh-hhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 2357889999975 222323 3443 04445555554433 22333334333 4444442222 3333
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 044198 660 AKYTHGFSGADITEICQRACKCAIREE 686 (772)
Q Consensus 660 a~~~~g~sg~di~~l~~~a~~~a~~~~ 686 (772)
..+.---+-++++++++.++..+....
T Consensus 287 ~~y~~pGNirELkN~Ve~~~~~~~~~~ 313 (403)
T COG1221 287 LAYDWPGNIRELKNLVERAVAQASGEG 313 (403)
T ss_pred HhCCCCCcHHHHHHHHHHHHHHhcccc
Confidence 333311256999999999988875443
No 330
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.79 E-value=4.1e-08 Score=105.91 Aligned_cols=169 Identities=20% Similarity=0.278 Sum_probs=101.8
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhcc-----cccch-------HHHHHHHHHHHhCCCeEEE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMW-----FGESE-------ANVRDVFDKARQSAPCVLF 560 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~-----vg~se-------~~i~~vf~~a~~~~p~ilf 560 (772)
..++||+|++||||+++|+++.... +.+|+.|++..+-... .|... ..-...|..|. ..+||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~ 98 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERAD---GGTLF 98 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCC---CCEEE
Confidence 4569999999999999999998765 4699999997653211 11110 00112344443 35999
Q ss_pred EcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC---------CCCcEEEEeecCCC-------CCCCccccCCCCcc
Q 044198 561 FDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS---------AKKTVFVIGATNRP-------DMIDPALLRPGRLD 624 (772)
Q Consensus 561 iDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~---------~~~~v~vi~aTn~~-------~~ld~allrpgRf~ 624 (772)
||||+.| ...++..|+..|+... ...++-+|++||.. ..+.+.|.. ||.
T Consensus 99 Ldei~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~ 163 (329)
T TIGR02974 99 LDELATA-------------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA 163 (329)
T ss_pred eCChHhC-------------CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc
Confidence 9999998 3556777888886432 12457889999863 134455554 664
Q ss_pred -ccccCCCCC--HHHHHHHHHHhhcc----CCCC--Cccc---HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 044198 625 -QLIYIPLPD--EHSRLQIFKSCLRK----SPVS--KDID---LKAIAKYTHGFSGADITEICQRACKCA 682 (772)
Q Consensus 625 -~~i~~~~p~--~~~r~~Il~~~~~~----~~~~--~~~~---~~~la~~~~g~sg~di~~l~~~a~~~a 682 (772)
..|.+|+.. .++...+++.++.+ .... ..++ +..|..+.=--+-++|++++..|...+
T Consensus 164 ~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 164 FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 455555543 23444555555432 1211 1233 344444331225588888888887655
No 331
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.79 E-value=8.1e-08 Score=110.76 Aligned_cols=201 Identities=11% Similarity=0.146 Sum_probs=117.0
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEE-eccc----
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISI-KGPE---- 531 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v-~~~~---- 531 (772)
....++++.|.+...+.+..++.... ++..+...++|+||||||||++++++|++++..++.. +...
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 44567788888887777776654311 1223344599999999999999999999988655431 1110
Q ss_pred --c----------hhcccccchHHHHHHHHHHHh----------CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHH
Q 044198 532 --L----------LTMWFGESEANVRDVFDKARQ----------SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLL 589 (772)
Q Consensus 532 --l----------~~~~vg~se~~i~~vf~~a~~----------~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL 589 (772)
. ++.+ ...-...+.+...+.. ....||||||++.+... ..+.+..+|
T Consensus 151 ~~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r----------~~~~lq~lL 219 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR----------DTRALHEIL 219 (637)
T ss_pred ccccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh----------hHHHHHHHH
Confidence 0 0111 1112334455555542 24579999999987532 123455555
Q ss_pred H-HhcCCCCCCcEEEEeecC-CCC--------------CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCC--C-
Q 044198 590 T-EMDGLSAKKTVFVIGATN-RPD--------------MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSP--V- 650 (772)
Q Consensus 590 ~-~ld~~~~~~~v~vi~aTn-~~~--------------~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~--~- 650 (772)
. .... ...+.+|++++ .|. .|.++++.--|+. +|.|++.+.....+.|+..+++.. .
T Consensus 220 r~~~~e---~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~~~~ 295 (637)
T TIGR00602 220 RWKYVS---IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAKKNG 295 (637)
T ss_pred HHHhhc---CCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhhccc
Confidence 5 2221 22333444333 121 1335676311553 799999999997777777775431 1
Q ss_pred -----CCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 044198 651 -----SKDIDLKAIAKYTHGFSGADITEICQRACKCAIR 684 (772)
Q Consensus 651 -----~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~ 684 (772)
..+..+..|+. .+.+|++.++......+.+
T Consensus 296 ~~~~~p~~~~l~~I~~----~s~GDiRsAIn~LQf~~~~ 330 (637)
T TIGR00602 296 EKIKVPKKTSVELLCQ----GCSGDIRSAINSLQFSSSK 330 (637)
T ss_pred cccccCCHHHHHHHHH----hCCChHHHHHHHHHHHHhc
Confidence 12234566666 3456999888776655543
No 332
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=5.8e-08 Score=103.62 Aligned_cols=132 Identities=17% Similarity=0.291 Sum_probs=94.1
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhCCcE----------------EEEecccchhc--cccc--chHHHHHHHHHHH--
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQANF----------------ISIKGPELLTM--WFGE--SEANVRDVFDKAR-- 552 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~~~~----------------i~v~~~~l~~~--~vg~--se~~i~~vf~~a~-- 552 (772)
.+.++||+||+|+||+++|+++|..+-+.- -.-+.+|+.-- .-|. .-..+|++-+.+.
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH 102 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc
Confidence 356799999999999999999998763210 00011222100 0011 2345666554443
Q ss_pred --hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCC
Q 044198 553 --QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIP 630 (772)
Q Consensus 553 --~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~ 630 (772)
.+...|++||++|.+ +....|.||..|+. +..++++|.+|+.++.|-|.+++ |+. .+.|+
T Consensus 103 ~~~g~~KV~iI~~a~~m-------------~~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC~-~~~~~ 164 (325)
T PRK06871 103 AQQGGNKVVYIQGAERL-------------TEAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RCQ-TWLIH 164 (325)
T ss_pred cccCCceEEEEechhhh-------------CHHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hce-EEeCC
Confidence 344579999999999 36678999999995 56678888899999999999987 997 88999
Q ss_pred CCCHHHHHHHHHHh
Q 044198 631 LPDEHSRLQIFKSC 644 (772)
Q Consensus 631 ~p~~~~r~~Il~~~ 644 (772)
+|+.++..+.+...
T Consensus 165 ~~~~~~~~~~L~~~ 178 (325)
T PRK06871 165 PPEEQQALDWLQAQ 178 (325)
T ss_pred CCCHHHHHHHHHHH
Confidence 99998888777654
No 333
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.78 E-value=1.5e-07 Score=97.57 Aligned_cols=196 Identities=18% Similarity=0.271 Sum_probs=120.4
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh---------CCcEEEEecccchhc--------------c-cccc-hHHHHHHHHH
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC---------QANFISIKGPELLTM--------------W-FGES-EANVRDVFDK 550 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~---------~~~~i~v~~~~l~~~--------------~-vg~s-e~~i~~vf~~ 550 (772)
..++||+|++|.|||++++..+... ..|++.+.++.--+. | ...+ .+.-..+...
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999765 246777765432110 1 0111 1122233344
Q ss_pred HHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCC--CC--CCCccccCCCCcccc
Q 044198 551 ARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNR--PD--MIDPALLRPGRLDQL 626 (772)
Q Consensus 551 a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~--~~--~ld~allrpgRf~~~ 626 (772)
.+...+.+|+|||++.++... .+-..++|+.|..+.+.-++-+|+.... .. .-|+.+-+ ||+ .
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs----------~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~-~ 207 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGS----------YRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFE-P 207 (302)
T ss_pred HHHcCCcEEEeechHHHhccc----------HHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccC-C
Confidence 556677899999999976432 2224455566555544444444444432 12 34677776 998 5
Q ss_pred ccCCCC-CHHHHHHHHHHhhccCCCCC--cccH----HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 044198 627 IYIPLP-DEHSRLQIFKSCLRKSPVSK--DIDL----KAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENP 699 (772)
Q Consensus 627 i~~~~p-~~~~r~~Il~~~~~~~~~~~--~~~~----~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~ 699 (772)
+.+|.- .-++-..++..+-+.+|+.. +..- ..|-..++|.. +++..++..|+..|++...+
T Consensus 208 ~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~l~~ll~~aA~~AI~sG~E----------- 275 (302)
T PF05621_consen 208 FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GELSRLLNAAAIAAIRSGEE----------- 275 (302)
T ss_pred ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHhcCCc-----------
Confidence 555532 33445667777777776652 2332 34456778766 58999999999999887542
Q ss_pred CCcccccccccHHHHHHHHhhCCCCC
Q 044198 700 EGAAGEVAEIKKEHFEESMKYARRSV 725 (772)
Q Consensus 700 ~~~~~~~~~i~~~~~~~al~~~~~s~ 725 (772)
.||.+++.. +.-+.||-
T Consensus 276 --------~It~~~l~~-~~~~~ps~ 292 (302)
T PF05621_consen 276 --------RITREILDK-IDWVPPSE 292 (302)
T ss_pred --------eecHHHHhh-CCCcChhh
Confidence 588888776 33344443
No 334
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=6.6e-08 Score=104.22 Aligned_cols=153 Identities=21% Similarity=0.274 Sum_probs=103.2
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHhCCc----------------EEEEecccchhccc-c----cchHHHHHHHHHH-
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANECQAN----------------FISIKGPELLTMWF-G----ESEANVRDVFDKA- 551 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~~~~----------------~i~v~~~~l~~~~v-g----~se~~i~~vf~~a- 551 (772)
+.+..+||+||+|+||+++|.++|..+-+. +-.-+.+|+.--.. + -+-..+|++-+.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 345679999999999999999999876321 00111222210000 0 1123455555444
Q ss_pred ---HhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCcccccc
Q 044198 552 ---RQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIY 628 (772)
Q Consensus 552 ---~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~ 628 (772)
..+...|++||++|.+ +....|.||..|+. +..+.++|..|+.|+.|-|-+++ |+. .+.
T Consensus 102 ~~~~~g~~kV~iI~~ae~m-------------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~ 163 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALL-------------TDAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-LHY 163 (334)
T ss_pred hccccCCceEEEEcchHhh-------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-ccc
Confidence 3445579999999999 46678999999995 56688889999999999999997 998 789
Q ss_pred CCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCH
Q 044198 629 IPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSG 668 (772)
Q Consensus 629 ~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg 668 (772)
|++|+.++..+.+.... +.+ ..+...+++.+.|--+
T Consensus 164 ~~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 164 LAPPPEQYALTWLSREV---TMS-QDALLAALRLSAGAPG 199 (334)
T ss_pred CCCCCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCCCHH
Confidence 99999888777775432 222 2234455666666443
No 335
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.76 E-value=7.4e-08 Score=106.34 Aligned_cols=135 Identities=21% Similarity=0.270 Sum_probs=77.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC--eEEEEech-hhhhhcccch-HHHH--HHHHHHHHHc---CCceEEecccc
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETGC--YFLCINGP-EIMSKMAGES-ESNL--REAFNVAEKN---APSIIFIDEID 292 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~~--~~~~v~~~-~~~~~~~g~~-~~~l--~~~f~~a~~~---~p~il~iDEid 292 (772)
...+|||.||||||||++|++++...+. +|..+.+. .......|.. -... ...|.....+ ...++|+|||+
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ 117 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIW 117 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccc
Confidence 4678999999999999999999997743 34433332 0111112211 0000 1112211111 23489999997
Q ss_pred ccccCCCCCchhhHHHHHHHHHHHhhccc-------cc-CceEEEEeeCCCC---CCChhhhccCCceeEEEeCCCC-HH
Q 044198 293 SIAPKREKTHGEVEKRIVSQLLTLMDGMK-------SR-AHVMVIGATNRPN---SIDPALRRSGRFDKEIDIGVPD-EV 360 (772)
Q Consensus 293 ~l~~~~~~~~~~~~~~v~~~L~~lld~~~-------~~-~~v~vI~atn~~~---~ld~al~r~gRf~~~i~i~~p~-~~ 360 (772)
.+. ....+.|+..|..-. .. ...++++|||+.. ...+++.. ||...+.+++|+ .+
T Consensus 118 ras-----------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~ 184 (498)
T PRK13531 118 KAG-----------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKA 184 (498)
T ss_pred cCC-----------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCchH
Confidence 553 345677888874322 11 1234445556432 12347776 998889999997 45
Q ss_pred HHHHHHHHH
Q 044198 361 GRLEVLRIH 369 (772)
Q Consensus 361 ~r~~Il~~~ 369 (772)
+..++|...
T Consensus 185 ~e~~lL~~~ 193 (498)
T PRK13531 185 NFRSMLTSQ 193 (498)
T ss_pred HHHHHHHcc
Confidence 557787653
No 336
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.75 E-value=3.9e-08 Score=115.32 Aligned_cols=157 Identities=24% Similarity=0.363 Sum_probs=99.3
Q ss_pred CccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----------------
Q 044198 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG----------------- 248 (772)
Q Consensus 186 ~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~----------------- 248 (772)
+.|..|.|++..+..+.-+...| ...+|||.|++|||||++|++|++.++
T Consensus 1 ~pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~ 67 (633)
T TIGR02442 1 FPFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDP 67 (633)
T ss_pred CCcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCc
Confidence 35778999998876665444332 124699999999999999999999883
Q ss_pred ------------------CeEEEEechhhhhhcccch--HHHHH---HHHH--HHHHcCCceEEeccccccccCCCCCch
Q 044198 249 ------------------CYFLCINGPEIMSKMAGES--ESNLR---EAFN--VAEKNAPSIIFIDEIDSIAPKREKTHG 303 (772)
Q Consensus 249 ------------------~~~~~v~~~~~~~~~~g~~--~~~l~---~~f~--~a~~~~p~il~iDEid~l~~~~~~~~~ 303 (772)
.+|+.+.+........|.. +..+. ..++ ........+|||||++.+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~------- 140 (633)
T TIGR02442 68 EEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD------- 140 (633)
T ss_pred cccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH-------
Confidence 3444444322222222211 11110 0010 00011235999999998753
Q ss_pred hhHHHHHHHHHHHhhcc-----------cccCceEEEEeeCCCC-CCChhhhccCCceeEEEeCCCC-HHHHHHHHHH
Q 044198 304 EVEKRIVSQLLTLMDGM-----------KSRAHVMVIGATNRPN-SIDPALRRSGRFDKEIDIGVPD-EVGRLEVLRI 368 (772)
Q Consensus 304 ~~~~~v~~~L~~lld~~-----------~~~~~v~vI~atn~~~-~ld~al~r~gRf~~~i~i~~p~-~~~r~~Il~~ 368 (772)
.+.+.|+..|+.- ....++.+|+++|+.+ .+.++|.. ||+..+.++.+. .+++.++++.
T Consensus 141 ----~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 141 ----HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ----HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 4456777777532 1124689999999753 68889988 999889888774 5677777764
No 337
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=8.4e-08 Score=98.67 Aligned_cols=82 Identities=28% Similarity=0.531 Sum_probs=61.5
Q ss_pred ceEEeccccccccCCCCCchhhH-HHHHHHHHHHhhcccc--------cCceEEEEee----CCCCCCChhhhccCCcee
Q 044198 284 SIIFIDEIDSIAPKREKTHGEVE-KRIVSQLLTLMDGMKS--------RAHVMVIGAT----NRPNSIDPALRRSGRFDK 350 (772)
Q Consensus 284 ~il~iDEid~l~~~~~~~~~~~~-~~v~~~L~~lld~~~~--------~~~v~vI~at----n~~~~ld~al~r~gRf~~ 350 (772)
.|+||||||.++.+.+.+..++. .-+..-|+-+.+|-.- ...+++||+- ..|++|=|.|. |||..
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCCce
Confidence 59999999999987764433433 3456678888876432 2457788764 56778888887 59999
Q ss_pred EEEeCCCCHHHHHHHHH
Q 044198 351 EIDIGVPDEVGRLEVLR 367 (772)
Q Consensus 351 ~i~i~~p~~~~r~~Il~ 367 (772)
.+++...+.++-..||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999999888874
No 338
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.74 E-value=8.4e-08 Score=102.43 Aligned_cols=161 Identities=17% Similarity=0.228 Sum_probs=103.7
Q ss_pred cccchHHHHHHHhhhccccCCchHHHhhcCCC-CCCceEEeCCCCCchhHHHHHHHHHhCC-------cEEEEec----c
Q 044198 463 DIGGLDTVKRELQETVQYPVEHPEMFEKFGMS-PSRGVLFYGPPGCGKTLLAKAIANECQA-------NFISIKG----P 530 (772)
Q Consensus 463 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~-~~~~iLl~GppGtGKT~la~alA~~~~~-------~~i~v~~----~ 530 (772)
++.|+++++..+.+.+.... .|.. ..+.++|+||||||||++|+++|+.++. +++.+++ +
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~s 123 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEES 123 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCC
Confidence 78999998888776554321 1222 3456899999999999999999999865 7888777 3
Q ss_pred cchhcccccchHHHHHHHHHHH----------------------------------------------------------
Q 044198 531 ELLTMWFGESEANVRDVFDKAR---------------------------------------------------------- 552 (772)
Q Consensus 531 ~l~~~~vg~se~~i~~vf~~a~---------------------------------------------------------- 552 (772)
.+....++-.....|..|....
T Consensus 124 p~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi 203 (361)
T smart00763 124 PMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDI 203 (361)
T ss_pred CCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccH
Confidence 3322222222222222221100
Q ss_pred ----------------h--------------CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC------
Q 044198 553 ----------------Q--------------SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS------ 596 (772)
Q Consensus 553 ----------------~--------------~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~------ 596 (772)
. .+..|+-|+|+.+. ..++++.||+.++...
T Consensus 204 ~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~-------------~~~~l~~LL~~~qE~~v~~~~~ 270 (361)
T smart00763 204 SELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKA-------------DIKFLHPLLTATQEGNIKGTGG 270 (361)
T ss_pred HHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcC-------------CHHHHHHHhhhhhcceEecCCc
Confidence 0 01134555555443 3567888999887531
Q ss_pred ---CCCcEEEEeecCCCC-------CCCccccCCCCccccccCCCC-CHHHHHHHHHHhhcc
Q 044198 597 ---AKKTVFVIGATNRPD-------MIDPALLRPGRLDQLIYIPLP-DEHSRLQIFKSCLRK 647 (772)
Q Consensus 597 ---~~~~v~vi~aTn~~~-------~ld~allrpgRf~~~i~~~~p-~~~~r~~Il~~~~~~ 647 (772)
-.-..+||++||..+ ...+|+++ ||. .+++|.| +..+-.+|.++.+..
T Consensus 271 ~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 271 FAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred ccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 112368999999873 55689998 998 8888866 677778899888865
No 339
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.74 E-value=4.3e-08 Score=105.89 Aligned_cols=192 Identities=21% Similarity=0.258 Sum_probs=110.6
Q ss_pred ccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchh----
Q 044198 462 ADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLT---- 534 (772)
Q Consensus 462 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~---- 534 (772)
+++.|.....+.+.+.+... .....++||+|++||||+++|+++.... +.+|+.+++..+-.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred CccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 44556555555554443321 1234569999999999999999998765 46899999987521
Q ss_pred -cccccch-------HHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC--C-------
Q 044198 535 -MWFGESE-------ANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS--A------- 597 (772)
Q Consensus 535 -~~vg~se-------~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~--~------- 597 (772)
.+.|... ......|..|. ...|||||||.|. ..+...|+..++... .
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~-------------~~~Q~~L~~~l~~~~~~~~g~~~~~ 138 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAP-------------MLVQEKLLRVIEYGELERVGGSQPL 138 (326)
T ss_pred HHHccccccccCCcccccCCchhccC---CCeEEeCChhhCC-------------HHHHHHHHHHHhcCcEEeCCCCcee
Confidence 1222110 00112344443 3589999999983 456777888876432 1
Q ss_pred CCcEEEEeecCCC-------CCCCccccCCCCcc-ccccCCCCCH--HHHHHHHHHhhcc----CCCC--Cccc---HHH
Q 044198 598 KKTVFVIGATNRP-------DMIDPALLRPGRLD-QLIYIPLPDE--HSRLQIFKSCLRK----SPVS--KDID---LKA 658 (772)
Q Consensus 598 ~~~v~vi~aTn~~-------~~ld~allrpgRf~-~~i~~~~p~~--~~r~~Il~~~~~~----~~~~--~~~~---~~~ 658 (772)
..++-||+||+.. ..+.+.|.. ||. ..|.+|+.-. ++...+++.++++ +... ..++ +..
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~ 216 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARET 216 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 1257888888763 244455555 774 4555554422 2334455555422 2211 1233 333
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHH
Q 044198 659 IAKYTHGFSGADITEICQRACKCA 682 (772)
Q Consensus 659 la~~~~g~sg~di~~l~~~a~~~a 682 (772)
|..+.=--+-++|+++++.|...+
T Consensus 217 L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 217 LLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhc
Confidence 433321124588988888886643
No 340
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.72 E-value=3.7e-07 Score=104.00 Aligned_cols=78 Identities=22% Similarity=0.277 Sum_probs=55.4
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhcc------cc----------------------cc
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMW------FG----------------------ES 540 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~------vg----------------------~s 540 (772)
|+.+...+|+.||||+|||+|+..++... +-+.+++...|-...+ +| ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 67778889999999999999999888654 4456666554432111 01 01
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcCchhhhh
Q 044198 541 EANVRDVFDKARQSAPCVLFFDELDSIAI 569 (772)
Q Consensus 541 e~~i~~vf~~a~~~~p~ilfiDEid~l~~ 569 (772)
+..+..+.+......|.+++||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 44566677777777889999999998854
No 341
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=1.7e-07 Score=101.03 Aligned_cols=152 Identities=13% Similarity=0.173 Sum_probs=103.5
Q ss_pred ccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--------EEEEechh
Q 044198 187 GYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY--------FLCINGPE 258 (772)
Q Consensus 187 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~--------~~~v~~~~ 258 (772)
+|++|.|.+..++.+...+... ..++.+||+||+|+|||++|+.+|+.+.+. +..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 5788999999999998887541 234568999999999999999999976331 22222110
Q ss_pred hhhhcccchHHHHHHHHHHH----HHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCC
Q 044198 259 IMSKMAGESESNLREAFNVA----EKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNR 334 (772)
Q Consensus 259 ~~~~~~g~~~~~l~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~ 334 (772)
++ .-.-..++.+.+.+ .....-|++||++|.+.. ...+.|+..++.. ...+.+|.+|+.
T Consensus 70 --~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~-----------~a~naLLK~LEep--p~~t~~il~~~~ 132 (313)
T PRK05564 70 --KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE-----------QAQNAFLKTIEEP--PKGVFIILLCEN 132 (313)
T ss_pred --CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH-----------HHHHHHHHHhcCC--CCCeEEEEEeCC
Confidence 11 11223455554432 233456999999987732 2346788888764 344566666677
Q ss_pred CCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHh
Q 044198 335 PNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHT 370 (772)
Q Consensus 335 ~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~ 370 (772)
++.+-|.+++ |.. .++|..|+.++....++...
T Consensus 133 ~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 133 LEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred hHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHh
Confidence 8899999998 664 68999999998887776544
No 342
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.71 E-value=3.6e-08 Score=95.27 Aligned_cols=133 Identities=25% Similarity=0.365 Sum_probs=88.4
Q ss_pred chHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCC-----------------------
Q 044198 466 GLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQA----------------------- 522 (772)
Q Consensus 466 g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~----------------------- 522 (772)
|++.+.+.|...+.. -+.+..+||+||+|+||+++|.++|..+-.
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 566677777665543 133566899999999999999999987622
Q ss_pred cEEEEecccchhcccccchHHHHHHHHHHHh----CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCC
Q 044198 523 NFISIKGPELLTMWFGESEANVRDVFDKARQ----SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAK 598 (772)
Q Consensus 523 ~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~ 598 (772)
.++.++..+--. .-.-..++++.+.+.. ....|++|||+|.+ +....|.||..|+. +.
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-------------~~~a~NaLLK~LEe--pp 130 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-------------TEEAQNALLKTLEE--PP 130 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS--------------HHHHHHHHHHHHS--TT
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-------------hHHHHHHHHHHhcC--CC
Confidence 233333332100 0123567776666543 34579999999998 46789999999995 45
Q ss_pred CcEEEEeecCCCCCCCccccCCCCccccccCCC
Q 044198 599 KTVFVIGATNRPDMIDPALLRPGRLDQLIYIPL 631 (772)
Q Consensus 599 ~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~ 631 (772)
.++++|.+|+.++.|-|.+++ |+. .+.|++
T Consensus 131 ~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~ 160 (162)
T PF13177_consen 131 ENTYFILITNNPSKILPTIRS--RCQ-VIRFRP 160 (162)
T ss_dssp TTEEEEEEES-GGGS-HHHHT--TSE-EEEE--
T ss_pred CCEEEEEEECChHHChHHHHh--hce-EEecCC
Confidence 688899999999999999987 885 555554
No 343
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=4e-07 Score=99.33 Aligned_cols=179 Identities=16% Similarity=0.194 Sum_probs=114.4
Q ss_pred CCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEE-----------
Q 044198 184 DDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFL----------- 252 (772)
Q Consensus 184 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~----------- 252 (772)
.+-.+++|.|.++.++.|.+++... ..+..+||+||+|+||+++|.++|+.+-+.--
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 4557788999999999998887652 23557999999999999999999997732100
Q ss_pred ----EEec-----------hhhhhh-----ccc------chHHHHHHHHHHH----HHcCCceEEeccccccccCCCCCc
Q 044198 253 ----CING-----------PEIMSK-----MAG------ESESNLREAFNVA----EKNAPSIIFIDEIDSIAPKREKTH 302 (772)
Q Consensus 253 ----~v~~-----------~~~~~~-----~~g------~~~~~l~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~ 302 (772)
.-.| +++.-- ..+ -....++.+.+.+ ....+.|++|||+|.+-.
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------ 155 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------ 155 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------
Confidence 0001 010000 000 0123344444432 234577999999987732
Q ss_pred hhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchh
Q 044198 303 GEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLE 382 (772)
Q Consensus 303 ~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~ 382 (772)
...+.|+..++.. ..+.++|.+|+.++.+.|.+++ |.. .+.+++|+.++-.++|...... ..+..+.
T Consensus 156 -----~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~---~~~~~~~ 222 (365)
T PRK07471 156 -----NAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPD---LPDDPRA 222 (365)
T ss_pred -----HHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhccc---CCHHHHH
Confidence 3456788877753 2356677788888889888887 764 4899999999999888765321 1111123
Q ss_pred HHHHHhcCCch
Q 044198 383 TVARETHGFVG 393 (772)
Q Consensus 383 ~la~~t~g~~~ 393 (772)
.++..+.|-.+
T Consensus 223 ~l~~~s~Gsp~ 233 (365)
T PRK07471 223 ALAALAEGSVG 233 (365)
T ss_pred HHHHHcCCCHH
Confidence 45555555443
No 344
>PRK08116 hypothetical protein; Validated
Probab=98.70 E-value=2e-08 Score=105.08 Aligned_cols=130 Identities=22% Similarity=0.266 Sum_probs=80.9
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhccc----ccchHHHHHHHHHHHhCCCeEEEEcCchhhh
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWF----GESEANVRDVFDKARQSAPCVLFFDELDSIA 568 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~v----g~se~~i~~vf~~a~~~~p~ilfiDEid~l~ 568 (772)
..+++|+|+||||||+||.++|+.+ +.+++.++.++++..+. +.+......+++.... ..+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~--~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVN--ADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcC--CCEEEEecccCCC
Confidence 4579999999999999999999986 67888889888776542 1111223334444332 3599999985421
Q ss_pred hccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCC-CC----CCccccCCCCc---cccccCCCCCHHHHHHH
Q 044198 569 IQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRP-DM----IDPALLRPGRL---DQLIYIPLPDEHSRLQI 640 (772)
Q Consensus 569 ~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~-~~----ld~allrpgRf---~~~i~~~~p~~~~r~~I 640 (772)
.++.....|...++..... +..+|.|||.+ +. ++.++.. |+ -..|.++.||. |..+
T Consensus 192 -----------~t~~~~~~l~~iin~r~~~-~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~~ 255 (268)
T PRK08116 192 -----------DTEWAREKVYNIIDSRYRK-GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RKEI 255 (268)
T ss_pred -----------CCHHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHHH
Confidence 1244556677777654322 23477777764 33 4556665 64 23455556654 4444
Q ss_pred HHH
Q 044198 641 FKS 643 (772)
Q Consensus 641 l~~ 643 (772)
.+.
T Consensus 256 ~~e 258 (268)
T PRK08116 256 AKE 258 (268)
T ss_pred HHH
Confidence 443
No 345
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.70 E-value=7.1e-08 Score=109.73 Aligned_cols=194 Identities=23% Similarity=0.316 Sum_probs=113.1
Q ss_pred ccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHH-----------hCCcEEEEe
Q 044198 460 RWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANE-----------CQANFISIK 528 (772)
Q Consensus 460 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~-----------~~~~~i~v~ 528 (772)
.++++.|.....+.+.+.+... .....++||+|++||||+++|+++... .+.||+.++
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 4677888877776666555321 123456999999999999999999887 357999999
Q ss_pred cccchhc-----ccccchH--------HHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCC
Q 044198 529 GPELLTM-----WFGESEA--------NVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGL 595 (772)
Q Consensus 529 ~~~l~~~-----~vg~se~--------~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~ 595 (772)
+..+-.. ..|..+. .-..+|+.|.. ..||||||+.|- ..++..||..|+.-
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp-------------~~~Q~kLl~~L~e~ 349 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMP-------------LPLQTRLLRVLEEK 349 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCC-------------HHHHHHHHhhhhcC
Confidence 9865322 2221110 11235555543 489999999983 55677788888643
Q ss_pred C-----C----CCcEEEEeecCCCC--CCCccccCCC---CccccccCCCCCHHHH----HHHHHHhhcc----CCCCCc
Q 044198 596 S-----A----KKTVFVIGATNRPD--MIDPALLRPG---RLDQLIYIPLPDEHSR----LQIFKSCLRK----SPVSKD 653 (772)
Q Consensus 596 ~-----~----~~~v~vi~aTn~~~--~ld~allrpg---Rf~~~i~~~~p~~~~r----~~Il~~~~~~----~~~~~~ 653 (772)
. + .-++-+|+|||..- .+....+|+. |+. .+.+..|...+| ..+++.++++ ....-.
T Consensus 350 ~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~ 428 (538)
T PRK15424 350 EVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLS-ILRLQLPPLRERVADILPLAESFLKQSLAALSAPFS 428 (538)
T ss_pred eEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhc-CCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCC
Confidence 1 1 12467899998742 2222112111 333 344555555444 3455555544 222211
Q ss_pred ccH--------HHHHHHcCCCCHHHHHHHHHHHHHH
Q 044198 654 IDL--------KAIAKYTHGFSGADITEICQRACKC 681 (772)
Q Consensus 654 ~~~--------~~la~~~~g~sg~di~~l~~~a~~~ 681 (772)
.+. ..|..+.=--+-++|++++..++..
T Consensus 429 ~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 429 AALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred HHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 111 2222222112568999999988764
No 346
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=3.9e-08 Score=100.40 Aligned_cols=97 Identities=33% Similarity=0.518 Sum_probs=73.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hcccchH-HHHHHHHHHHH----HcCCceEEeccccccccC
Q 044198 224 KGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS-KMAGESE-SNLREAFNVAE----KNAPSIIFIDEIDSIAPK 297 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~-~~~g~~~-~~l~~~f~~a~----~~~p~il~iDEid~l~~~ 297 (772)
.+|||.||+|||||.||+.||+.++.||..-++..+.. .|+|+-. ..+..+++.+. ..+..|++|||||.+..+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 46999999999999999999999999999888877653 5777654 44566666543 234579999999999876
Q ss_pred CCCCc---hhhHHHHHHHHHHHhhcc
Q 044198 298 REKTH---GEVEKRIVSQLLTLMDGM 320 (772)
Q Consensus 298 ~~~~~---~~~~~~v~~~L~~lld~~ 320 (772)
....+ +-...-+..+|+.+++|.
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHcCc
Confidence 54321 122345678899999874
No 347
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=1.4e-07 Score=100.52 Aligned_cols=155 Identities=22% Similarity=0.289 Sum_probs=104.2
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhCCcE-------------EEEecccchhc-----ccc------cchHHHHHHHHH
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQANF-------------ISIKGPELLTM-----WFG------ESEANVRDVFDK 550 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~~~~-------------i~v~~~~l~~~-----~vg------~se~~i~~vf~~ 550 (772)
-+..+||+||+|+||+++|.++|..+-+.- ..-+.+|+.-- ..| -.-..||++.+.
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 355699999999999999999997663210 00111222100 001 113456766665
Q ss_pred HHhC----CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCcccc
Q 044198 551 ARQS----APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQL 626 (772)
Q Consensus 551 a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~ 626 (772)
+... .-.|++||++|.+ +....|.||..|+. +..++++|.+|+.++.|-|.+.+ |+. .
T Consensus 105 ~~~~p~~g~~kV~iI~~ae~m-------------~~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RCq-~ 166 (319)
T PRK08769 105 LALTPQYGIAQVVIVDPADAI-------------NRAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RCQ-R 166 (319)
T ss_pred HhhCcccCCcEEEEeccHhhh-------------CHHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hhe-E
Confidence 5432 3369999999999 35678999999995 44577788888889999999987 997 8
Q ss_pred ccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHH
Q 044198 627 IYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADIT 672 (772)
Q Consensus 627 i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~ 672 (772)
+.|++|+.++-.+.+... ..+ ..+...++..+.|-.+..+.
T Consensus 167 i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 167 LEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred eeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHHHHH
Confidence 899999998877777642 222 22344667777776554443
No 348
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=7.2e-07 Score=95.96 Aligned_cols=235 Identities=18% Similarity=0.244 Sum_probs=145.9
Q ss_pred ccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh-----CCcEEEEecccch-----
Q 044198 464 IGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPELL----- 533 (772)
Q Consensus 464 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~-----~~~~i~v~~~~l~----- 533 (772)
+.|-+.-...+++++...+ ....++++.+.|.||||||.+..-+-... +...+++++..+-
T Consensus 152 l~gRe~e~~~v~~F~~~hl---------e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 152 LKGRELEMDIVREFFSLHL---------ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred ccchHHHHHHHHHHHHhhh---------hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHH
Confidence 3444555555555544322 33557789999999999999888555433 2244777776532
Q ss_pred -----hcc----ccc-chHHHHHHHHHHHhC--CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcE
Q 044198 534 -----TMW----FGE-SEANVRDVFDKARQS--APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTV 601 (772)
Q Consensus 534 -----~~~----vg~-se~~i~~vf~~a~~~--~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v 601 (772)
+.+ +|. ++.+....|+....+ .+-++++||+|.|+.+. .+++.++. ++.. ..+.++
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~----------~~vLy~lF-ewp~-lp~sr~ 290 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS----------QTVLYTLF-EWPK-LPNSRI 290 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc----------cceeeeeh-hccc-CCccee
Confidence 112 111 234455666555433 36789999999998442 12222222 2222 245688
Q ss_pred EEEeecCCCCCCCccccC----CCCccccccCCCCCHHHHHHHHHHhhccCCCCCcc--cHHHHHHHcCCCCHHHHHH--
Q 044198 602 FVIGATNRPDMIDPALLR----PGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDI--DLKAIAKYTHGFSGADITE-- 673 (772)
Q Consensus 602 ~vi~aTn~~~~ld~allr----pgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~--~~~~la~~~~g~sg~di~~-- 673 (772)
++|+..|..|+-|..|.| -+--...+.|++++.++..+|++..+...+..... .++..|+...+.|| |++.
T Consensus 291 iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaL 369 (529)
T KOG2227|consen 291 ILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKAL 369 (529)
T ss_pred eeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHH
Confidence 999999999888865543 11223789999999999999999999887766443 47788888888886 4443
Q ss_pred -HHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCC
Q 044198 674 -ICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARR 723 (772)
Q Consensus 674 -l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~ 723 (772)
+|+.|...|-.+........... -.......+|..+|+..++.++-.
T Consensus 370 dv~R~aiEI~E~e~r~~~~~~l~~---~~~p~~~~~v~~~~va~viSk~~~ 417 (529)
T KOG2227|consen 370 DVCRRAIEIAEIEKRKILDDPLSP---GTSPEKKKKVGVEHVAAVISKVDG 417 (529)
T ss_pred HHHHHHHHHHHHHHhhccccCCCC---CCCcccccccchHHHHHHhhhhcc
Confidence 78888888776654332111000 001111135667787777776643
No 349
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.69 E-value=9.4e-08 Score=110.67 Aligned_cols=195 Identities=21% Similarity=0.282 Sum_probs=115.5
Q ss_pred cccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhc
Q 044198 459 VRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM 535 (772)
Q Consensus 459 v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~ 535 (772)
..++++.|.....+.+.+.+.... ....++||+|++|||||++|+++.... +.+|+.+++..+-..
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 456778888777666665544311 235569999999999999999999875 569999999875322
Q ss_pred c-----cccchH-------HHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-----C-
Q 044198 536 W-----FGESEA-------NVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-----A- 597 (772)
Q Consensus 536 ~-----vg~se~-------~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-----~- 597 (772)
+ .|.... .....|..| ...+||||||+.|. ..+...|+..|+... .
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~-------------~~~Q~~Ll~~l~~~~~~~~~~~ 325 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS-------------PAFQAKLLRVLQEGEFERVGGN 325 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC-------------HHHHHHHHHHHhcCcEEECCCC
Confidence 1 111100 001113223 23599999999983 456777888886532 0
Q ss_pred ---CCcEEEEeecCCCC-------CCCccccCCCCcc-ccccCCCCC--HHHHHHHHHHhhccC----CCCCccc---HH
Q 044198 598 ---KKTVFVIGATNRPD-------MIDPALLRPGRLD-QLIYIPLPD--EHSRLQIFKSCLRKS----PVSKDID---LK 657 (772)
Q Consensus 598 ---~~~v~vi~aTn~~~-------~ld~allrpgRf~-~~i~~~~p~--~~~r~~Il~~~~~~~----~~~~~~~---~~ 657 (772)
..++-+|+||+..- .+.+.|.. |+. ..|.+|+.. .++...|++.++++. .....++ +.
T Consensus 326 ~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~ 403 (534)
T TIGR01817 326 RTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIR 403 (534)
T ss_pred ceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 12477888887641 22333333 454 345565543 244445666655432 2111233 34
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHH
Q 044198 658 AIAKYTHGFSGADITEICQRACKCA 682 (772)
Q Consensus 658 ~la~~~~g~sg~di~~l~~~a~~~a 682 (772)
.|..+.=--+-++|+++++.|+..+
T Consensus 404 ~L~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 404 VLMSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhC
Confidence 4444331225689999999887654
No 350
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.68 E-value=8e-08 Score=93.87 Aligned_cols=134 Identities=20% Similarity=0.289 Sum_probs=86.3
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh-CC----eEEEEec
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET-GC----YFLCING 256 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l-~~----~~~~v~~ 256 (772)
+..+..+.||.|-++.++.+.-+..- ....+++|.|||||||||-+.++|.++ |. .++.+|+
T Consensus 20 KYrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNA 86 (333)
T KOG0991|consen 20 KYRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNA 86 (333)
T ss_pred hhCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccC
Confidence 45667788999999999998766653 234579999999999999999999886 32 3466676
Q ss_pred hhhhhhcccchHHHHHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEee
Q 044198 257 PEIMSKMAGESESNLREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGAT 332 (772)
Q Consensus 257 ~~~~~~~~g~~~~~l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~at 332 (772)
++-.+ ......+++ .|.+-+- +.-.|+++||.|++... ...+|...|+-+....+ ++.+|
T Consensus 87 SdeRG--IDvVRn~IK-~FAQ~kv~lp~grhKIiILDEADSMT~g-----------AQQAlRRtMEiyS~ttR--FalaC 150 (333)
T KOG0991|consen 87 SDERG--IDVVRNKIK-MFAQKKVTLPPGRHKIIILDEADSMTAG-----------AQQALRRTMEIYSNTTR--FALAC 150 (333)
T ss_pred ccccc--cHHHHHHHH-HHHHhhccCCCCceeEEEeeccchhhhH-----------HHHHHHHHHHHHcccch--hhhhh
Confidence 54321 111122232 2322221 12249999999987532 22456666665554444 45578
Q ss_pred CCCCCCChhhhc
Q 044198 333 NRPNSIDPALRR 344 (772)
Q Consensus 333 n~~~~ld~al~r 344 (772)
|..+.+=+.+.+
T Consensus 151 N~s~KIiEPIQS 162 (333)
T KOG0991|consen 151 NQSEKIIEPIQS 162 (333)
T ss_pred cchhhhhhhHHh
Confidence 888777666655
No 351
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.66 E-value=8.8e-08 Score=109.10 Aligned_cols=197 Identities=20% Similarity=0.289 Sum_probs=113.3
Q ss_pred cccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhc
Q 044198 459 VRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM 535 (772)
Q Consensus 459 v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~ 535 (772)
..|+++.|.....+.+.+.+... . ....++||+|++||||+++|+++.... +.||+.+++..+-..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~----------A-~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY----------A-RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH----------h-CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 45778888887776666555321 1 234579999999999999999998765 569999999765321
Q ss_pred -----ccccch--------HHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-----C
Q 044198 536 -----WFGESE--------ANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-----A 597 (772)
Q Consensus 536 -----~vg~se--------~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-----~ 597 (772)
..|..+ ..-..+|+.|.. ..||||||+.|- ..++..|+..|+.-. +
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp-------------~~~Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMP-------------LPLQTRLLRVLEEREVVRVGG 341 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCC-------------HHHHHHHHHHHhcCcEEecCC
Confidence 122111 012234555543 489999999983 556777888876431 1
Q ss_pred ----CCcEEEEeecCCCC--CCCccccCCC---Ccc-ccccCCCCCH--HHHHHHHHHhhccC----CCCCc-ccHHH--
Q 044198 598 ----KKTVFVIGATNRPD--MIDPALLRPG---RLD-QLIYIPLPDE--HSRLQIFKSCLRKS----PVSKD-IDLKA-- 658 (772)
Q Consensus 598 ----~~~v~vi~aTn~~~--~ld~allrpg---Rf~-~~i~~~~p~~--~~r~~Il~~~~~~~----~~~~~-~~~~~-- 658 (772)
.-++-+|+|||.+- .+....+|+. |+. ..|.+|+.-+ ++...+++.++++. .+.-. ..+..
T Consensus 342 ~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~ 421 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLA 421 (526)
T ss_pred CceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhH
Confidence 12457888888742 2333222211 443 3444444422 23344555555443 22111 11122
Q ss_pred -----HHHHcCCCCHHHHHHHHHHHHHHH
Q 044198 659 -----IAKYTHGFSGADITEICQRACKCA 682 (772)
Q Consensus 659 -----la~~~~g~sg~di~~l~~~a~~~a 682 (772)
|..+.=--+-++|++++..++..+
T Consensus 422 ~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 422 GVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 333221124588999888886653
No 352
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.66 E-value=4.3e-08 Score=95.11 Aligned_cols=110 Identities=27% Similarity=0.480 Sum_probs=72.8
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhc-----ccccch-------HHHHHHHHHHHhCCCeEEE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM-----WFGESE-------ANVRDVFDKARQSAPCVLF 560 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~-----~vg~se-------~~i~~vf~~a~~~~p~ilf 560 (772)
+.++||+|++||||+++|+++.... +.||+.|+++.+-.. ..|... ..-..+|+.|... +||
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~ 98 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG---TLF 98 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS---EEE
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce---EEe
Confidence 4679999999999999999999876 468999999775322 223211 1123577777665 999
Q ss_pred EcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-----C----CCcEEEEeecCCCCCCCccccCCCCcc
Q 044198 561 FDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-----A----KKTVFVIGATNRPDMIDPALLRPGRLD 624 (772)
Q Consensus 561 iDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-----~----~~~v~vi~aTn~~~~ld~allrpgRf~ 624 (772)
||||+.| ...++..|++.|+.-. . .-++-||+||+. .+...+.. |+|.
T Consensus 99 Ld~I~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~--~l~~~v~~-g~fr 155 (168)
T PF00158_consen 99 LDEIEDL-------------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK--DLEELVEQ-GRFR 155 (168)
T ss_dssp EETGGGS--------------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---HHHHHHT-TSS-
T ss_pred ecchhhh-------------HHHHHHHHHHHHhhchhccccccccccccceEEeecCc--CHHHHHHc-CCCh
Confidence 9999999 3567888888887421 1 236889999986 23333333 5554
No 353
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.65 E-value=2.8e-07 Score=89.45 Aligned_cols=130 Identities=27% Similarity=0.491 Sum_probs=76.3
Q ss_pred cCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh-----c
Q 044198 192 GGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSK-----M 263 (772)
Q Consensus 192 ~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~-----~ 263 (772)
.|.+..++++.+.+.... ..+.+|||+|++||||+++|++|.+.. +.+|+.+||..+... .
T Consensus 2 iG~s~~m~~~~~~~~~~a-----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAA-----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp S--SHHHHHHHHHHHHHT-----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHh-----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 456666666666555422 224689999999999999999999865 468999999765322 1
Q ss_pred ccchH-------HHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc---------ccCceE
Q 044198 264 AGESE-------SNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK---------SRAHVM 327 (772)
Q Consensus 264 ~g~~~-------~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~---------~~~~v~ 327 (772)
.|... ..-..+|..|.. .+||||||+.+.+ .+...|+++++.-. ...++.
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLPP-----------ELQAKLLRVLEEGKFTRLGSDKPVPVDVR 136 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-H-----------HHHHHHHHHHHHSEEECCTSSSEEE--EE
T ss_pred hccccccccccccccCCceeeccc---eEEeecchhhhHH-----------HHHHHHHHHHhhchhccccccccccccce
Confidence 11100 001134554444 4999999998854 34456666665321 134788
Q ss_pred EEEeeCCCCCCChhhhccCCce
Q 044198 328 VIGATNRPNSIDPALRRSGRFD 349 (772)
Q Consensus 328 vI~atn~~~~ld~al~r~gRf~ 349 (772)
+|++|+.+ +...+. .|+|.
T Consensus 137 iI~st~~~--l~~~v~-~g~fr 155 (168)
T PF00158_consen 137 IIASTSKD--LEELVE-QGRFR 155 (168)
T ss_dssp EEEEESS---HHHHHH-TTSS-
T ss_pred EEeecCcC--HHHHHH-cCCCh
Confidence 99999864 433333 35663
No 354
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.65 E-value=3.2e-07 Score=105.84 Aligned_cols=169 Identities=13% Similarity=0.151 Sum_probs=97.1
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEE-Eech---
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLC-INGP--- 257 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~-v~~~--- 257 (772)
+..+..++++.|.++.++.++.++.... ++..+.+-++|+|||||||||+++.+|++++..+.. .+..
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~ 148 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPD 148 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhc
Confidence 4567788999999999999998876421 122344559999999999999999999988754322 1111
Q ss_pred hhhhh------------cccchHHHHHHHHHHHHH----------cCCceEEeccccccccCCCCCchhhHHHHHHHHHH
Q 044198 258 EIMSK------------MAGESESNLREAFNVAEK----------NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLT 315 (772)
Q Consensus 258 ~~~~~------------~~g~~~~~l~~~f~~a~~----------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~ 315 (772)
..... ........++.++..+.. ....||||||++.+.... ...+..++.
T Consensus 149 ~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~--------~~~lq~lLr 220 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD--------TRALHEILR 220 (637)
T ss_pred ccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh--------HHHHHHHHH
Confidence 00000 001122334444544432 245699999998775321 111222222
Q ss_pred -HhhcccccCceEEEEeeC-CCC--------------CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHh
Q 044198 316 -LMDGMKSRAHVMVIGATN-RPN--------------SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHT 370 (772)
Q Consensus 316 -lld~~~~~~~v~vI~atn-~~~--------------~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~ 370 (772)
... ....+.+|++++ .+. .|.+++++..|.. +|.|++.+.......|+..+
T Consensus 221 ~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl 287 (637)
T TIGR00602 221 WKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIV 287 (637)
T ss_pred HHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHH
Confidence 111 123333444333 111 1336776433443 68999999988665555443
No 355
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.64 E-value=7.9e-08 Score=113.82 Aligned_cols=193 Identities=20% Similarity=0.248 Sum_probs=110.2
Q ss_pred cccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccch--
Q 044198 459 VRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELL-- 533 (772)
Q Consensus 459 v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~-- 533 (772)
..++++.|.....+.+.+.+... .....++||+|++||||+++|+++.... +.+|+.+++..+-
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 35677777766555554433321 1234569999999999999999999875 4699999987652
Q ss_pred ---hcccccc----hHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC----C-----
Q 044198 534 ---TMWFGES----EANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS----A----- 597 (772)
Q Consensus 534 ---~~~vg~s----e~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~----~----- 597 (772)
+.+.|.. .......|+.|. ..+||||||+.+- ..+...|+..|+.-. .
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~---~GtL~ldei~~l~-------------~~~Q~~Ll~~l~~~~~~~~~~~~~~ 454 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAH---GGTLFLEKVEYLS-------------PELQSALLQVLKTGVITRLDSRRLI 454 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECC---CCEEEEcChhhCC-------------HHHHHHHHHHHhcCcEEeCCCCceE
Confidence 2233321 111111233332 3599999999983 456777888876431 1
Q ss_pred CCcEEEEeecCCCC-------CCCccccCCCCccccccCCCCCHHHH----HHHHHHhhccC----C--CC-CcccHHHH
Q 044198 598 KKTVFVIGATNRPD-------MIDPALLRPGRLDQLIYIPLPDEHSR----LQIFKSCLRKS----P--VS-KDIDLKAI 659 (772)
Q Consensus 598 ~~~v~vi~aTn~~~-------~ld~allrpgRf~~~i~~~~p~~~~r----~~Il~~~~~~~----~--~~-~~~~~~~l 659 (772)
.-++-+|+|||..- .+.+.|.- |+. .+.+..|...+| ..+++.++++. . +. .+.-+..|
T Consensus 455 ~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 531 (638)
T PRK11388 455 PVDVRVIATTTADLAMLVEQNRFSRQLYY--ALH-AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARL 531 (638)
T ss_pred EeeEEEEEeccCCHHHHHhcCCChHHHhh--hhc-eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHH
Confidence 01577999998742 12222222 332 344445554444 34455554332 1 11 22224444
Q ss_pred HHHcCCCCHHHHHHHHHHHHHH
Q 044198 660 AKYTHGFSGADITEICQRACKC 681 (772)
Q Consensus 660 a~~~~g~sg~di~~l~~~a~~~ 681 (772)
.++.=--+-++|+++++.|...
T Consensus 532 ~~y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 532 VSYRWPGNDFELRSVIENLALS 553 (638)
T ss_pred HcCCCCChHHHHHHHHHHHHHh
Confidence 4433123568899988887654
No 356
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.63 E-value=1.2e-07 Score=104.50 Aligned_cols=199 Identities=22% Similarity=0.334 Sum_probs=124.8
Q ss_pred ccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhc-
Q 044198 460 RWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM- 535 (772)
Q Consensus 460 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~- 535 (772)
...++.|.....+.+.+.+... .+....+|++|++||||-.+|+++.... +.||+.+||..+-..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 3456778777777777665431 1234569999999999999999999887 459999999765322
Q ss_pred ----ccccch----HH---HHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-----C--
Q 044198 536 ----WFGESE----AN---VRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-----A-- 597 (772)
Q Consensus 536 ----~vg~se----~~---i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-----~-- 597 (772)
..|... .+ -...|+.|... .||+|||..+ .-.++..||..|..-. +
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~m-------------pl~~Q~kLLRvLqe~~~~rvG~~~ 271 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEM-------------PLELQVKLLRVLQEREFERVGGNK 271 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccC-------------CHHHHHHHHHHHHcCeeEecCCCc
Confidence 222111 11 12256666554 9999999877 3567778888887431 1
Q ss_pred --CCcEEEEeecCCC--CCCCccccCCC---CccccccCCCCCHHHHH----HHHHHhhc----cCCCC-CcccHHHHHH
Q 044198 598 --KKTVFVIGATNRP--DMIDPALLRPG---RLDQLIYIPLPDEHSRL----QIFKSCLR----KSPVS-KDIDLKAIAK 661 (772)
Q Consensus 598 --~~~v~vi~aTn~~--~~ld~allrpg---Rf~~~i~~~~p~~~~r~----~Il~~~~~----~~~~~-~~~~~~~la~ 661 (772)
.-+|-||+|||+. +.+....+|.. |+. ++.+..|...+|. -+++.+++ +.+.. ..++-+.++.
T Consensus 272 ~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~ 350 (464)
T COG2204 272 PIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAA 350 (464)
T ss_pred ccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 2367899999973 22332222211 554 6677777666664 34444443 33222 3445555554
Q ss_pred Hc-CCCC--HHHHHHHHHHHHHHHHHHH
Q 044198 662 YT-HGFS--GADITEICQRACKCAIREE 686 (772)
Q Consensus 662 ~~-~g~s--g~di~~l~~~a~~~a~~~~ 686 (772)
+. -.|. -++|+|++..++..+-...
T Consensus 351 L~~y~WPGNVREL~N~ver~~il~~~~~ 378 (464)
T COG2204 351 LLAYDWPGNVRELENVVERAVILSEGPE 378 (464)
T ss_pred HHhCCCChHHHHHHHHHHHHHhcCCccc
Confidence 43 2344 4999999999987765443
No 357
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.63 E-value=1.4e-07 Score=108.20 Aligned_cols=194 Identities=22% Similarity=0.293 Sum_probs=114.0
Q ss_pred cccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhc--
Q 044198 461 WADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM-- 535 (772)
Q Consensus 461 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~-- 535 (772)
..++.|.....+.+.+.+... .....++||+|++||||+++|+++.... +.+|+.+++..+-..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred CCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 355677766666665554431 1235579999999999999999999875 468999999876321
Q ss_pred ---ccccch-------HHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC---------
Q 044198 536 ---WFGESE-------ANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS--------- 596 (772)
Q Consensus 536 ---~vg~se-------~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~--------- 596 (772)
..|... ......|..|. ...|||||||.|. ..++..|+..++...
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~-------------~~~Q~~Ll~~l~~~~~~~~g~~~~ 318 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELP-------------LALQAKLLRVLQYGEIQRVGSDRS 318 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCC-------------HHHHHHHHHHHhcCCEeeCCCCcc
Confidence 122110 00112344443 3489999999983 456777888876432
Q ss_pred CCCcEEEEeecCCCC-------CCCccccCCCCccccccCCCCCHHHH----HHHHHHhhcc----CCCC-Cccc---HH
Q 044198 597 AKKTVFVIGATNRPD-------MIDPALLRPGRLDQLIYIPLPDEHSR----LQIFKSCLRK----SPVS-KDID---LK 657 (772)
Q Consensus 597 ~~~~v~vi~aTn~~~-------~ld~allrpgRf~~~i~~~~p~~~~r----~~Il~~~~~~----~~~~-~~~~---~~ 657 (772)
...++-+|++||+.- .+.+.|.. |+. .+.+..|...+| -.+++.++++ +... ..++ +.
T Consensus 319 ~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~ 395 (509)
T PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQA 395 (509)
T ss_pred eecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 113578999998742 23333333 444 333444544444 3444444432 2111 1233 34
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 044198 658 AIAKYTHGFSGADITEICQRACKCAIR 684 (772)
Q Consensus 658 ~la~~~~g~sg~di~~l~~~a~~~a~~ 684 (772)
.|..+.=--+-+||++++..|+..+..
T Consensus 396 ~L~~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 396 ALLAYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhcCC
Confidence 444433123569999999999877643
No 358
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.63 E-value=1.8e-06 Score=90.92 Aligned_cols=172 Identities=16% Similarity=0.274 Sum_probs=97.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCC-eEE--E-Eec----hhhh----hhc----ccch-HH---HHHHHH-HHHHHcCC
Q 044198 225 GILLHGPPGTGKTLLARAIANETGC-YFL--C-ING----PEIM----SKM----AGES-ES---NLREAF-NVAEKNAP 283 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~~-~~~--~-v~~----~~~~----~~~----~g~~-~~---~l~~~f-~~a~~~~p 283 (772)
.++|+||+|+||||+++.+++.+.. .+. . +++ .++. ..+ .+.. .. .+...+ .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4889999999999999999998752 221 1 111 1111 111 0111 11 122212 22334567
Q ss_pred ceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccc-cCceEEEEeeCCC--CCC----ChhhhccCCceeEEEeCC
Q 044198 284 SIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKS-RAHVMVIGATNRP--NSI----DPALRRSGRFDKEIDIGV 356 (772)
Q Consensus 284 ~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~-~~~v~vI~atn~~--~~l----d~al~r~gRf~~~i~i~~ 356 (772)
.+++|||++.+.+. ..+.|..+.+.... ...+.++.+..+. +.+ ...+.+ |+...+++++
T Consensus 125 ~vliiDe~~~l~~~-----------~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l~~ 191 (269)
T TIGR03015 125 ALLVVDEAQNLTPE-----------LLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHLGP 191 (269)
T ss_pred eEEEEECcccCCHH-----------HHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeCCC
Confidence 79999999877421 12333333332221 2223333333221 111 123444 7788899999
Q ss_pred CCHHHHHHHHHHHhccCCc-----ccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhh
Q 044198 357 PDEVGRLEVLRIHTKNMKL-----AEDVNLETVARETHGFVGADLAALCTEGAMQCIRE 410 (772)
Q Consensus 357 p~~~~r~~Il~~~~~~~~l-----~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 410 (772)
.+.++..+++...+..... -....++.+.+.+.|.... +..+|..+...+...
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~ 249 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLE 249 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHc
Confidence 9999999988876653321 1233577888899998654 888888876665543
No 359
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.63 E-value=6.4e-08 Score=104.81 Aligned_cols=195 Identities=23% Similarity=0.314 Sum_probs=120.1
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchh
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLT 534 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~ 534 (772)
......|+|...+...+.+.+... ......+||.|.+||||-.+|+++...+ ..||+.+|++.+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 455667888888887777666542 1235569999999999999999999887 57999999976532
Q ss_pred c-----cccc----chHH---HHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-----C
Q 044198 535 M-----WFGE----SEAN---VRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-----A 597 (772)
Q Consensus 535 ~-----~vg~----se~~---i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-----~ 597 (772)
. ..|. ...+ -+.-|+.|.. ..||+|||..+ .-.++..||..|...+ +
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGel-------------PL~lQaKLLRvLQegEieRvG~ 351 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGEL-------------PLALQAKLLRVLQEGEIERVGG 351 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCC---CeEechhhccC-------------CHHHHHHHHHHHhhcceeecCC
Confidence 2 1221 1111 1223444433 48999999766 3456777888886532 1
Q ss_pred ----CCcEEEEeecCCCCCCCccccCCCCcc-------ccccCCCCCHHHHH--------HHHHHhhccCCC-CCccc--
Q 044198 598 ----KKTVFVIGATNRPDMIDPALLRPGRLD-------QLIYIPLPDEHSRL--------QIFKSCLRKSPV-SKDID-- 655 (772)
Q Consensus 598 ----~~~v~vi~aTn~~~~ld~allrpgRf~-------~~i~~~~p~~~~r~--------~Il~~~~~~~~~-~~~~~-- 655 (772)
.-+|-||||||+ .|..++.. |+|- .++.+..|...+|. ..++.+-++++. ....+
T Consensus 352 ~r~ikVDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~ 428 (550)
T COG3604 352 DRTIKVDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAE 428 (550)
T ss_pred CceeEEEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHH
Confidence 135889999998 33334333 4442 24445555555543 222333333443 22233
Q ss_pred -HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 044198 656 -LKAIAKYTHGFSGADITEICQRACKCA 682 (772)
Q Consensus 656 -~~~la~~~~g~sg~di~~l~~~a~~~a 682 (772)
++.|.++.---+-+|+++++..|+..|
T Consensus 429 Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 429 ALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 344444331125699999999999987
No 360
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.63 E-value=2.1e-06 Score=89.34 Aligned_cols=62 Identities=39% Similarity=0.602 Sum_probs=46.0
Q ss_pred cccccCcHHHHHHH---HHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CeEEEEechhhh
Q 044198 188 YEDVGGVRKQLGQI---REVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG--CYFLCINGPEIM 260 (772)
Q Consensus 188 ~~~i~G~~~~~~~i---~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~--~~~~~v~~~~~~ 260 (772)
-+.+.|+.++-+.- .+++.. |--..++||+.||||||||.||-++|+++| .||+.++++++.
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~-----------gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiY 104 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQ-----------GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIY 104 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHh-----------CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceee
Confidence 34577887765553 344433 334578999999999999999999999996 578888776663
No 361
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.62 E-value=3.7e-07 Score=108.85 Aligned_cols=196 Identities=22% Similarity=0.301 Sum_probs=115.5
Q ss_pred cccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhc
Q 044198 459 VRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM 535 (772)
Q Consensus 459 v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~ 535 (772)
..++++.|.....+.+.+.+... .....++||+|++|||||++|+++.... +.+|+.+++..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 35667888877777666554431 1234579999999999999999999865 568999998765321
Q ss_pred -----cccc--------chHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC------
Q 044198 536 -----WFGE--------SEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS------ 596 (772)
Q Consensus 536 -----~vg~--------se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~------ 596 (772)
+.|. .... ...|..|. ..+||||||+.+- ..+...|+..|+...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~-~g~le~a~---~GtL~Ldei~~L~-------------~~~Q~~L~~~l~~~~~~~~g~ 504 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQR-IGRFELAD---KSSLFLDEVGDMP-------------LELQPKLLRVLQEQEFERLGS 504 (686)
T ss_pred HhhhhhcCcccccccccccch-hhHHHhcC---CCeEEEechhhCC-------------HHHHHHHHHHHHhCCEEeCCC
Confidence 2221 1111 22344443 3599999999983 556777888876431
Q ss_pred ---CCCcEEEEeecCCCC--CCCccccCCC---CccccccCCCCCHHHHH----HHHHHhhcc----CCCC----CcccH
Q 044198 597 ---AKKTVFVIGATNRPD--MIDPALLRPG---RLDQLIYIPLPDEHSRL----QIFKSCLRK----SPVS----KDIDL 656 (772)
Q Consensus 597 ---~~~~v~vi~aTn~~~--~ld~allrpg---Rf~~~i~~~~p~~~~r~----~Il~~~~~~----~~~~----~~~~~ 656 (772)
...++-+|++|+.+- .+....+++. |+. .+.+..|...+|. .+++.++++ +... .+.-+
T Consensus 505 ~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al 583 (686)
T PRK15429 505 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETL 583 (686)
T ss_pred CCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 124577899998742 2222222211 343 3344555555553 345554433 2211 22224
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 044198 657 KAIAKYTHGFSGADITEICQRACKCAI 683 (772)
Q Consensus 657 ~~la~~~~g~sg~di~~l~~~a~~~a~ 683 (772)
..|..+.=--+-++|+++++.|...+-
T Consensus 584 ~~L~~y~WPGNvrEL~~~i~~a~~~~~ 610 (686)
T PRK15429 584 RTLSNMEWPGNVRELENVIERAVLLTR 610 (686)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhCC
Confidence 444443312256999999999986543
No 362
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=5.6e-07 Score=96.81 Aligned_cols=150 Identities=18% Similarity=0.304 Sum_probs=98.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCe------------------------EEEEechhhhhhcccchHHHHHHHHHH
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETGCY------------------------FLCINGPEIMSKMAGESESNLREAFNV 277 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~~~------------------------~~~v~~~~~~~~~~g~~~~~l~~~f~~ 277 (772)
.++.+||+||+|+|||++|+.+|+.+.+. ++.+.... .++ .-.-..++.+.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~-~~~--~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE-ADK--TIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC-CCC--CCCHHHHHHHHHH
Confidence 35679999999999999999999987431 11111100 000 1123455555544
Q ss_pred HH----HcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEE
Q 044198 278 AE----KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEID 353 (772)
Q Consensus 278 a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~ 353 (772)
+. .....|++||++|.+.. ...+.|+..++... .++.+|.+|+.++.+.|.+++ |... +.
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~-----------~aaNaLLK~LEEPp--~~~~fiL~t~~~~~ll~TI~S--Rc~~-~~ 161 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNR-----------NAANALLKSLEEPS--GDTVLLLISHQPSRLLPTIKS--RCQQ-QA 161 (328)
T ss_pred HhhccccCCCeEEEECChhhCCH-----------HHHHHHHHHHhCCC--CCeEEEEEECChhhCcHHHHh--hcee-ee
Confidence 43 23456899999998753 34578888888743 467888899999999999998 8766 89
Q ss_pred eCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCch
Q 044198 354 IGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVG 393 (772)
Q Consensus 354 i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~ 393 (772)
|++|+.++-.+.|...... ..+.....++....|-.+
T Consensus 162 ~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 162 CPLPSNEESLQWLQQALPE---SDERERIELLTLAGGSPL 198 (328)
T ss_pred CCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCCHH
Confidence 9999999888887754311 112223344555555443
No 363
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.61 E-value=1.7e-07 Score=107.73 Aligned_cols=194 Identities=20% Similarity=0.281 Sum_probs=109.3
Q ss_pred cccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhc
Q 044198 459 VRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM 535 (772)
Q Consensus 459 v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~ 535 (772)
..|+++.|.....+.+.+.+.. +. .....+||+|++||||+++|+++.... +.+|+.++++.+-..
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~----------~A-~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~ 269 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARK----------LA-MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD 269 (520)
T ss_pred ccccceeECCHHHHHHHHHHHH----------Hh-CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH
Confidence 4566777766654444433321 11 124459999999999999999987654 468999999875321
Q ss_pred -----ccccch-------HHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-------
Q 044198 536 -----WFGESE-------ANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS------- 596 (772)
Q Consensus 536 -----~vg~se-------~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~------- 596 (772)
..|... ..-..+|+.|.. ..||||||+.+. ..+...|++.++...
T Consensus 270 ~~e~elFG~~~~~~~~~~~~~~g~~e~a~~---GtL~LdeI~~L~-------------~~~Q~~Ll~~l~~~~~~~~g~~ 333 (520)
T PRK10820 270 VVESELFGHAPGAYPNALEGKKGFFEQANG---GSVLLDEIGEMS-------------PRMQAKLLRFLNDGTFRRVGED 333 (520)
T ss_pred HHHHHhcCCCCCCcCCcccCCCChhhhcCC---CEEEEeChhhCC-------------HHHHHHHHHHHhcCCcccCCCC
Confidence 122111 011234554433 489999999983 456677888776421
Q ss_pred --CCCcEEEEeecCCCC-------CCCccccCCCCccccccCCCCCHHHHH----HHHHHhhc----cCCCC-CcccHHH
Q 044198 597 --AKKTVFVIGATNRPD-------MIDPALLRPGRLDQLIYIPLPDEHSRL----QIFKSCLR----KSPVS-KDIDLKA 658 (772)
Q Consensus 597 --~~~~v~vi~aTn~~~-------~ld~allrpgRf~~~i~~~~p~~~~r~----~Il~~~~~----~~~~~-~~~~~~~ 658 (772)
...++-||+||+.+- .+.+.|.. |+. .+.+..|...+|. .+++.+++ +.... ..+.-+.
T Consensus 334 ~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a 410 (520)
T PRK10820 334 HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADL 410 (520)
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHH
Confidence 123567888887642 23334443 654 2444444444443 33334432 22221 1233333
Q ss_pred HHHHcC-CC--CHHHHHHHHHHHHHHH
Q 044198 659 IAKYTH-GF--SGADITEICQRACKCA 682 (772)
Q Consensus 659 la~~~~-g~--sg~di~~l~~~a~~~a 682 (772)
+..... .| +-++|++++..|...+
T Consensus 411 ~~~L~~y~WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 411 NTVLTRYGWPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHhC
Confidence 333321 23 5588888888886653
No 364
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.61 E-value=1e-06 Score=89.27 Aligned_cols=127 Identities=20% Similarity=0.242 Sum_probs=81.3
Q ss_pred CeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcC-CCCCCcEEEEeecCC------------CCCCCccccCCCC
Q 044198 556 PCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDG-LSAKKTVFVIGATNR------------PDMIDPALLRPGR 622 (772)
Q Consensus 556 p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~-~~~~~~v~vi~aTn~------------~~~ld~allrpgR 622 (772)
|.||||||++.|- -.-++-|-..+++ +.+ ++++|||+ |.-|+-.++. |
T Consensus 289 pGVLFIDEvHMLD-------------IEcFsFlNrAlE~d~~P----iiimaTNrgit~iRGTn~~SphGiP~D~lD--R 349 (454)
T KOG2680|consen 289 PGVLFIDEVHMLD-------------IECFSFLNRALENDMAP----IIIMATNRGITRIRGTNYRSPHGIPIDLLD--R 349 (454)
T ss_pred cceEEEeeehhhh-------------hHHHHHHHHHhhhccCc----EEEEEcCCceEEeecCCCCCCCCCcHHHhh--h
Confidence 7889999988771 1112222222332 222 67778875 4556556664 5
Q ss_pred ccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCC
Q 044198 623 LDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEG 701 (772)
Q Consensus 623 f~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~ 701 (772)
+ .+|...+++.++.++||+..+.+-.+. .+..++.|......-|-+---+++..|.+.|.++.-
T Consensus 350 ~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~-------------- 414 (454)
T KOG2680|consen 350 M-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKG-------------- 414 (454)
T ss_pred h-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcC--------------
Confidence 5 377778899999999999998776554 233345555544444555555677777777777643
Q ss_pred cccccccccHHHHHHHHhhC
Q 044198 702 AAGEVAEIKKEHFEESMKYA 721 (772)
Q Consensus 702 ~~~~~~~i~~~~~~~al~~~ 721 (772)
..+..+|++.+..-+
T Consensus 415 -----~~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 415 -----KVVEVDDIERVYRLF 429 (454)
T ss_pred -----ceeehhHHHHHHHHH
Confidence 258888898887765
No 365
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.60 E-value=5.4e-07 Score=96.55 Aligned_cols=161 Identities=25% Similarity=0.373 Sum_probs=107.6
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEec--------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKG-------- 529 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~-------- 529 (772)
++.+.-+.|++..|..|.-.... +.-.|+|+.|+.|+|||++++++|..+.---+...+
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 34567788999988877543222 235679999999999999999999887311110000
Q ss_pred c------------------------cchhcccccchH----------HHH---HHHH---HHHhCCCeEEEEcCchhhhh
Q 044198 530 P------------------------ELLTMWFGESEA----------NVR---DVFD---KARQSAPCVLFFDELDSIAI 569 (772)
Q Consensus 530 ~------------------------~l~~~~vg~se~----------~i~---~vf~---~a~~~~p~ilfiDEid~l~~ 569 (772)
+ .++..-+|.++. .++ ..|+ .|+. ...|+++||+..|
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A-nRGIlYvDEvnlL-- 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA-NRGILYVDEVNLL-- 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc-cCCEEEEeccccc--
Confidence 0 011111222222 111 1111 1222 2369999999888
Q ss_pred ccCCCCCCCCchhHHHHHHHHHhcCC-----------CCCCcEEEEeecCCCC-CCCccccCCCCccccccCCCC-CHHH
Q 044198 570 QRGSSVGDGGGVDRIVNQLLTEMDGL-----------SAKKTVFVIGATNRPD-MIDPALLRPGRLDQLIYIPLP-DEHS 636 (772)
Q Consensus 570 ~r~~~~~~~~~~~~~~~~lL~~ld~~-----------~~~~~v~vi~aTn~~~-~ld~allrpgRf~~~i~~~~p-~~~~ 636 (772)
.+.+++.||+.+... ....++++|+|+|.-+ .|-|.|+- ||...+.+..| +.++
T Consensus 157 -----------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~ 223 (423)
T COG1239 157 -----------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEE 223 (423)
T ss_pred -----------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHH
Confidence 478999999988652 2346899999999754 68888887 99999999866 7899
Q ss_pred HHHHHHHhhcc
Q 044198 637 RLQIFKSCLRK 647 (772)
Q Consensus 637 r~~Il~~~~~~ 647 (772)
|.+|.++.+..
T Consensus 224 rv~Ii~r~~~f 234 (423)
T COG1239 224 RVEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHHh
Confidence 99999987754
No 366
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=3.5e-07 Score=97.86 Aligned_cols=178 Identities=17% Similarity=0.224 Sum_probs=115.7
Q ss_pred ccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE----------EEEec
Q 044198 187 GYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYF----------LCING 256 (772)
Q Consensus 187 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~----------~~v~~ 256 (772)
.|++|.|.+..++.+++.+... ..+..+||+||+|+||+++|.++|+.+-+.- ...+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4788999999999999888652 2256799999999999999999998763210 01111
Q ss_pred hhhh---------hh--------ccc--------chHHHHHHHHHHHH----HcCCceEEeccccccccCCCCCchhhHH
Q 044198 257 PEIM---------SK--------MAG--------ESESNLREAFNVAE----KNAPSIIFIDEIDSIAPKREKTHGEVEK 307 (772)
Q Consensus 257 ~~~~---------~~--------~~g--------~~~~~l~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~ 307 (772)
+|+. ++ ..| -.-..++.+.+.+. .....|++||++|.+..
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~----------- 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE----------- 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-----------
Confidence 2211 00 000 01124455544433 23456999999987742
Q ss_pred HHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHH
Q 044198 308 RIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARE 387 (772)
Q Consensus 308 ~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~ 387 (772)
...+.|+..++... +.++|..|+.++.|-|.+++ |.. .+.|+.|+.++..++|+.....-.. +.++..++..
T Consensus 139 ~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~~~ 210 (314)
T PRK07399 139 AAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELLAL 210 (314)
T ss_pred HHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhccccc--hhHHHHHHHH
Confidence 33577888888754 34566777888999999998 764 4899999999999988865421111 1123556666
Q ss_pred hcCCchhh
Q 044198 388 THGFVGAD 395 (772)
Q Consensus 388 t~g~~~~d 395 (772)
..|-.+.-
T Consensus 211 a~Gs~~~a 218 (314)
T PRK07399 211 AQGSPGAA 218 (314)
T ss_pred cCCCHHHH
Confidence 65554433
No 367
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=2.7e-07 Score=98.27 Aligned_cols=132 Identities=15% Similarity=0.223 Sum_probs=93.7
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHhCCcE---------------EEEecccchhccc---cc--chHHHHHHHHHHHh
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANECQANF---------------ISIKGPELLTMWF---GE--SEANVRDVFDKARQ 553 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~~~~~---------------i~v~~~~l~~~~v---g~--se~~i~~vf~~a~~ 553 (772)
+.+..+||+||.|+||+++|+++|..+-+.- -.-+.+|+.--.. |. +-..||++-+.+..
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~ 102 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQE 102 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhh
Confidence 3456799999999999999999998763210 0011122210000 11 23456665544432
Q ss_pred ----CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccC
Q 044198 554 ----SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYI 629 (772)
Q Consensus 554 ----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~ 629 (772)
+...|++||++|.+ .....|.||..|+. +..++++|..|+.|+.|-|-+++ |+. .+.|
T Consensus 103 ~~~~~~~kV~iI~~ae~m-------------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq-~~~~ 164 (319)
T PRK06090 103 SSQLNGYRLFVIEPADAM-------------NESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ-QWVV 164 (319)
T ss_pred CcccCCceEEEecchhhh-------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce-eEeC
Confidence 33579999999999 35678999999995 55678888999999999999887 997 8899
Q ss_pred CCCCHHHHHHHHHH
Q 044198 630 PLPDEHSRLQIFKS 643 (772)
Q Consensus 630 ~~p~~~~r~~Il~~ 643 (772)
++|+.++..+.+..
T Consensus 165 ~~~~~~~~~~~L~~ 178 (319)
T PRK06090 165 TPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999888887764
No 368
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.59 E-value=6.8e-07 Score=95.81 Aligned_cols=161 Identities=25% Similarity=0.375 Sum_probs=102.8
Q ss_pred CCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEec--------
Q 044198 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCING-------- 256 (772)
Q Consensus 185 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~-------- 256 (772)
.+.|.-+.|.+.-+..|--.... ..-.|+||.|+.||||||++|+|+..|+-.-+...|
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 46677788888766554211111 123579999999999999999999988543322222
Q ss_pred h-----h-------------------hhhhcccchHHHH------HHHHH-HH--------HHcCCceEEeccccccccC
Q 044198 257 P-----E-------------------IMSKMAGESESNL------REAFN-VA--------EKNAPSIIFIDEIDSIAPK 297 (772)
Q Consensus 257 ~-----~-------------------~~~~~~g~~~~~l------~~~f~-~a--------~~~~p~il~iDEid~l~~~ 297 (772)
+ . +.....+.++.++ ..+.. .. ......|+++||++.|.
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~-- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc--
Confidence 0 0 1111112233311 11111 00 11123599999998774
Q ss_pred CCCCchhhHHHHHHHHHHHhhcc-----------cccCceEEEEeeCCCC-CCChhhhccCCceeEEEeCCC-CHHHHHH
Q 044198 298 REKTHGEVEKRIVSQLLTLMDGM-----------KSRAHVMVIGATNRPN-SIDPALRRSGRFDKEIDIGVP-DEVGRLE 364 (772)
Q Consensus 298 ~~~~~~~~~~~v~~~L~~lld~~-----------~~~~~v~vI~atn~~~-~ld~al~r~gRf~~~i~i~~p-~~~~r~~ 364 (772)
..++..|++.+..- +...++++|||+||.+ .|-|.|+. ||...+.+..| +.++|.+
T Consensus 158 ---------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 158 ---------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred ---------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHH
Confidence 46778888776531 2235799999999984 78888988 99999988866 6788999
Q ss_pred HHHHHhc
Q 044198 365 VLRIHTK 371 (772)
Q Consensus 365 Il~~~~~ 371 (772)
|.+....
T Consensus 227 Ii~r~~~ 233 (423)
T COG1239 227 IIRRRLA 233 (423)
T ss_pred HHHHHHH
Confidence 9876554
No 369
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.59 E-value=9.5e-08 Score=104.98 Aligned_cols=153 Identities=28% Similarity=0.436 Sum_probs=98.3
Q ss_pred CCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh
Q 044198 184 DDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIM 260 (772)
Q Consensus 184 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~ 260 (772)
..++|++|.|-..++.++.+..... ......|||.|++||||..+|+++.+.. +.||+.+||..+-
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 4578899999998888877766541 2335679999999999999999999876 5689999996543
Q ss_pred hh-------------cccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcc-------
Q 044198 261 SK-------------MAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGM------- 320 (772)
Q Consensus 261 ~~-------------~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~------- 320 (772)
.. +.|....--...|+.|.. ..||+|||..+. ..+...|+..+..-
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgemp-----------l~LQaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMP-----------LPLQAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCC-----------HHHHHHHHHHHhhceEEecCC
Confidence 21 111111111234544444 389999997653 34456666666431
Q ss_pred --cccCceEEEEeeCCCCCCChhhhccCCcee-------EEEeCCCCHHHHHH
Q 044198 321 --KSRAHVMVIGATNRPNSIDPALRRSGRFDK-------EIDIGVPDEVGRLE 364 (772)
Q Consensus 321 --~~~~~v~vI~atn~~~~ld~al~r~gRf~~-------~i~i~~p~~~~r~~ 364 (772)
.....|-+|||||+. +-.++. .|+|-. .+.+..|...+|.+
T Consensus 375 t~~~~vDVRIIAATN~n--L~~~i~-~G~FReDLYYRLNV~~i~iPPLReR~e 424 (560)
T COG3829 375 TKPIPVDVRIIAATNRN--LEKMIA-EGTFREDLYYRLNVIPITIPPLRERKE 424 (560)
T ss_pred CCceeeEEEEEeccCcC--HHHHHh-cCcchhhheeeeceeeecCCCcccCcc
Confidence 124579999999975 222222 244421 25566776666654
No 370
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.57 E-value=4.3e-07 Score=102.73 Aligned_cols=144 Identities=19% Similarity=0.319 Sum_probs=86.0
Q ss_pred CccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhh--
Q 044198 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY--FLCINGPEIMS-- 261 (772)
Q Consensus 186 ~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~--~~~v~~~~~~~-- 261 (772)
..|.++.|.+..++.+.-.+ ....+++|+||||||||++++.+++.+... -..+.+..+.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 46778888877755543222 235679999999999999999999865321 01111111100
Q ss_pred ------------------------hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHh
Q 044198 262 ------------------------KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLM 317 (772)
Q Consensus 262 ------------------------~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~ll 317 (772)
...|.....-...+.. ....+|||||++.+. ..+.+.|.+.|
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~l---A~~GvLfLDEi~e~~-----------~~~~~~L~~~L 319 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISL---AHNGVLFLDELPEFK-----------RSVLDALREPI 319 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhc---cCCCeEecCChhhCC-----------HHHHHHHHHHH
Confidence 0000000000001222 223599999998653 34567777777
Q ss_pred hccc-----------ccCceEEEEeeCCC------C-----------------CCChhhhccCCceeEEEeCCCCHH
Q 044198 318 DGMK-----------SRAHVMVIGATNRP------N-----------------SIDPALRRSGRFDKEIDIGVPDEV 360 (772)
Q Consensus 318 d~~~-----------~~~~v~vI~atn~~------~-----------------~ld~al~r~gRf~~~i~i~~p~~~ 360 (772)
+... ...++.+|+++|+- . .++..++. ||+..+.++.++..
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 5422 12468999999973 1 46677777 89988888877654
No 371
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.56 E-value=3.2e-07 Score=99.47 Aligned_cols=148 Identities=24% Similarity=0.314 Sum_probs=94.8
Q ss_pred ccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC----------------------
Q 044198 191 VGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG---------------------- 248 (772)
Q Consensus 191 i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~---------------------- 248 (772)
+.|.++....+........ ..+..+||+||||+|||++|.++|+.+.
T Consensus 3 ~~~~~~~~~~l~~~~~~~~-----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 3 LVPWQEAVKRLLVQALESG-----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred cccchhHHHHHHHHHHhcC-----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 4455555556555554211 1233599999999999999999999886
Q ss_pred --CeEEEEechhhhhhcccchHHHHHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccc
Q 044198 249 --CYFLCINGPEIMSKMAGESESNLREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKS 322 (772)
Q Consensus 249 --~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~ 322 (772)
..++.++.++..... .....++.+-+.... ...-|++|||+|.+.. ...+.|+..++..
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~-----------~A~nallk~lEep-- 136 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE-----------DAANALLKTLEEP-- 136 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-----------HHHHHHHHHhccC--
Confidence 345666665432211 123445544443322 2346999999998854 3346677777654
Q ss_pred cCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHH
Q 044198 323 RAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLR 367 (772)
Q Consensus 323 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~ 367 (772)
..+..+|.+||.++.+-+.+++ |... +.|.+|+.......++
T Consensus 137 ~~~~~~il~~n~~~~il~tI~S--Rc~~-i~f~~~~~~~~i~~~e 178 (325)
T COG0470 137 PKNTRFILITNDPSKILPTIRS--RCQR-IRFKPPSRLEAIAWLE 178 (325)
T ss_pred CCCeEEEEEcCChhhccchhhh--ccee-eecCCchHHHHHHHhh
Confidence 3467778889999999889988 6543 7777755555544433
No 372
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.9e-07 Score=98.97 Aligned_cols=98 Identities=33% Similarity=0.520 Sum_probs=73.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hcccc-hHHHHHHHHHHHH----HcCCceEEecccccccc
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS-KMAGE-SESNLREAFNVAE----KNAPSIIFIDEIDSIAP 296 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~-~~~g~-~~~~l~~~f~~a~----~~~p~il~iDEid~l~~ 296 (772)
..+|||.||+|+|||.||+.||+.++.||...+|..+.. .|+|+ .+..+..+++.|. ..+..|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 357999999999999999999999999999999988764 47775 4566777777653 34556999999999984
Q ss_pred CCCCC---chhhHHHHHHHHHHHhhcc
Q 044198 297 KREKT---HGEVEKRIVSQLLTLMDGM 320 (772)
Q Consensus 297 ~~~~~---~~~~~~~v~~~L~~lld~~ 320 (772)
....- .+-..+-+...|+.+++|.
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred cCccccccccccchhHHHHHHHHhccc
Confidence 32211 1112245667889998863
No 373
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.55 E-value=1.3e-06 Score=101.51 Aligned_cols=53 Identities=26% Similarity=0.404 Sum_probs=44.5
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY 250 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~ 250 (772)
+++.-++++.|.++.++.++.++.. +++++|+||||||||++++++++.++..
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4556788899999999888877753 3489999999999999999999998654
No 374
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=2.7e-07 Score=99.08 Aligned_cols=132 Identities=20% Similarity=0.265 Sum_probs=93.1
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHhCC-------------------------cEEEEeccc---chhcc-cccchHHH
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANECQA-------------------------NFISIKGPE---LLTMW-FGESEANV 544 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~~~-------------------------~~i~v~~~~---l~~~~-vg~se~~i 544 (772)
+.+..+||+||+|+|||++|+.+|..+.+ .|+.+.... --++. ..-+-..|
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 44667999999999999999999988632 233333211 00000 00123567
Q ss_pred HHHHHHHHh----CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCC
Q 044198 545 RDVFDKARQ----SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRP 620 (772)
Q Consensus 545 ~~vf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrp 620 (772)
|++.+.+.. ....|+++|+++.+ .....+.||..|+... .+..+|.+|+.++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-------------d~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S- 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-------------NLQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS- 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-------------CHHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH-
Confidence 777766653 33469999999988 3567888999998764 346677788889999998887
Q ss_pred CCccccccCCCCCHHHHHHHHHH
Q 044198 621 GRLDQLIYIPLPDEHSRLQIFKS 643 (772)
Q Consensus 621 gRf~~~i~~~~p~~~~r~~Il~~ 643 (772)
|+. .+.|++|+.++..+.+..
T Consensus 163 -Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 -RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred -Hhh-hhcCCCCCHHHHHHHHHh
Confidence 886 889999999887777754
No 375
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.54 E-value=7.9e-08 Score=107.10 Aligned_cols=41 Identities=24% Similarity=0.343 Sum_probs=31.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCeE------EEEechhhh
Q 044198 220 VKPPKGILLHGPPGTGKTLLARAIANETGCYF------LCINGPEIM 260 (772)
Q Consensus 220 ~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~------~~v~~~~~~ 260 (772)
+.+..-+-|.|.+|||||++++++.+.+.... +.+++.++.
T Consensus 32 v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~ 78 (539)
T COG1123 32 VEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLL 78 (539)
T ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchh
Confidence 45567799999999999999999999886542 445555443
No 376
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.53 E-value=1.8e-07 Score=107.11 Aligned_cols=130 Identities=20% Similarity=0.218 Sum_probs=83.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCeEEEE----echhhhhhc-----ccchHHHHHHHHHHHHHcCCceEEecccccc
Q 044198 224 KGILLHGPPGTGKTLLARAIANETGCYFLCI----NGPEIMSKM-----AGESESNLREAFNVAEKNAPSIIFIDEIDSI 294 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l~~~~~~v----~~~~~~~~~-----~g~~~~~l~~~f~~a~~~~p~il~iDEid~l 294 (772)
.+|||+|+||||||++|+++++..+...+.. ++..+.... .|+..-.-. .+.. ....+++|||++.+
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G-~l~~---A~~Gil~iDEi~~l 312 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGG-ALVL---ADNGVCCIDEFDKM 312 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCc-cEEe---cCCCEEEEechhhC
Confidence 4799999999999999999999876432221 111111100 011000000 0111 12459999999987
Q ss_pred ccCCCCCchhhHHHHHHHHHHHhhccc-----------ccCceEEEEeeCCCC-------------CCChhhhccCCcee
Q 044198 295 APKREKTHGEVEKRIVSQLLTLMDGMK-----------SRAHVMVIGATNRPN-------------SIDPALRRSGRFDK 350 (772)
Q Consensus 295 ~~~~~~~~~~~~~~v~~~L~~lld~~~-----------~~~~v~vI~atn~~~-------------~ld~al~r~gRf~~ 350 (772)
.+ .....|++.|+... -..++.+|||+||.+ .|++++.+ ||+.
T Consensus 313 ~~-----------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdL 379 (509)
T smart00350 313 DD-----------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDL 379 (509)
T ss_pred CH-----------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceee
Confidence 43 23456667775432 124688999999863 58999998 9988
Q ss_pred EEE-eCCCCHHHHHHHHHHHh
Q 044198 351 EID-IGVPDEVGRLEVLRIHT 370 (772)
Q Consensus 351 ~i~-i~~p~~~~r~~Il~~~~ 370 (772)
.+. ...|+.+...+|++..+
T Consensus 380 i~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 380 LFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred EEEecCCCChHHHHHHHHHHH
Confidence 654 46889999888887654
No 377
>PRK08181 transposase; Validated
Probab=98.52 E-value=2.3e-07 Score=96.59 Aligned_cols=100 Identities=20% Similarity=0.313 Sum_probs=64.6
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhccccc-chHHHHHHHHHHHhCCCeEEEEcCchhhhhcc
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGE-SEANVRDVFDKARQSAPCVLFFDELDSIAIQR 571 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~-se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r 571 (772)
..+++|+||||||||+||.++|.++ +..++.++.++++..+... .+......++... .+.+|+|||++.+...
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~~- 182 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTKD- 182 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccCC-
Confidence 4679999999999999999999764 6778888888887754211 1223344555443 3469999999876321
Q ss_pred CCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCC
Q 044198 572 GSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRP 610 (772)
Q Consensus 572 ~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 610 (772)
+.....|++.++...... -+|.|||.+
T Consensus 183 ----------~~~~~~Lf~lin~R~~~~--s~IiTSN~~ 209 (269)
T PRK08181 183 ----------QAETSVLFELISARYERR--SILITANQP 209 (269)
T ss_pred ----------HHHHHHHHHHHHHHHhCC--CEEEEcCCC
Confidence 122333444444332222 477888875
No 378
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.52 E-value=5.4e-07 Score=92.56 Aligned_cols=133 Identities=20% Similarity=0.264 Sum_probs=92.2
Q ss_pred CceEEeCCCCCchhHHHHHHHHHhCCc------EEEEecccchhcccccchHHHHHHHHHHHh-------CCCeEEEEcC
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANECQAN------FISIKGPELLTMWFGESEANVRDVFDKARQ-------SAPCVLFFDE 563 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~~~~------~i~v~~~~l~~~~vg~se~~i~~vf~~a~~-------~~p~ilfiDE 563 (772)
.++|+|||||||||+...+.|..+-.+ +..++.++-.+. ...+.--..|..++. ..+..+++||
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgi---d~vr~qi~~fast~~~~~fst~~~fKlvILDE 139 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGI---DPVRQQIHLFASTQQPTTYSTHAAFKLVILDE 139 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCC---cchHHHHHHHHhhccceeccccCceeEEEecc
Confidence 389999999999999999999887442 122333332111 112333445655553 3678999999
Q ss_pred chhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHH
Q 044198 564 LDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKS 643 (772)
Q Consensus 564 id~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~ 643 (772)
+|+. +....|+|-+..+.+.. ++-++.-.|.|..+-|++.. ||. .+.|.+.+.+.-...+..
T Consensus 140 ADaM-------------T~~AQnALRRviek~t~--n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~sh 201 (360)
T KOG0990|consen 140 ADAM-------------TRDAQNALRRVIEKYTA--NTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSH 201 (360)
T ss_pred hhHh-------------hHHHHHHHHHHHHHhcc--ceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHH
Confidence 9998 35567778887776654 34455778999999999997 887 667777777777777776
Q ss_pred hhccCCC
Q 044198 644 CLRKSPV 650 (772)
Q Consensus 644 ~~~~~~~ 650 (772)
+...-+.
T Consensus 202 i~e~e~~ 208 (360)
T KOG0990|consen 202 IRESEQK 208 (360)
T ss_pred HHhcchh
Confidence 6654443
No 379
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=9e-07 Score=95.79 Aligned_cols=148 Identities=14% Similarity=0.212 Sum_probs=99.4
Q ss_pred cccccC-cHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------------
Q 044198 188 YEDVGG-VRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY---------------- 250 (772)
Q Consensus 188 ~~~i~G-~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~---------------- 250 (772)
|+.|.| ++..++.++..+... ..++.+||+||+|+|||++|+.+|+.+.+.
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 455655 888888888777541 235568999999999999999999886321
Q ss_pred --------EEEEechhhhhhcccchHHHHHHHHHHHH----HcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhh
Q 044198 251 --------FLCINGPEIMSKMAGESESNLREAFNVAE----KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMD 318 (772)
Q Consensus 251 --------~~~v~~~~~~~~~~g~~~~~l~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld 318 (772)
+..+.. + +. .-.-..++.+.+.+. ....-|++|||+|.+.. ...+.|+..++
T Consensus 72 ~~~~~hpD~~~i~~-~--~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-----------~a~NaLLK~LE 135 (329)
T PRK08058 72 IDSGNHPDVHLVAP-D--GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-----------SAANSLLKFLE 135 (329)
T ss_pred HhcCCCCCEEEecc-c--cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH-----------HHHHHHHHHhc
Confidence 111110 0 00 011234555544332 22345999999987742 34577888887
Q ss_pred cccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHH
Q 044198 319 GMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRI 368 (772)
Q Consensus 319 ~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~ 368 (772)
.. ...+.+|.+|+.++.+-|.+++ |... +++..|+.++..++|+.
T Consensus 136 EP--p~~~~~Il~t~~~~~ll~TIrS--Rc~~-i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 136 EP--SGGTTAILLTENKHQILPTILS--RCQV-VEFRPLPPESLIQRLQE 180 (329)
T ss_pred CC--CCCceEEEEeCChHhCcHHHHh--hcee-eeCCCCCHHHHHHHHHH
Confidence 64 3456677788888899999998 6543 88999999888777764
No 380
>PRK08116 hypothetical protein; Validated
Probab=98.51 E-value=5e-07 Score=94.64 Aligned_cols=123 Identities=20% Similarity=0.327 Sum_probs=73.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcccc----hHHHHHHHHHHHHHcCCceEEeccccccc
Q 044198 223 PKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKMAGE----SESNLREAFNVAEKNAPSIIFIDEIDSIA 295 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~~g~----~~~~l~~~f~~a~~~~p~il~iDEid~l~ 295 (772)
+.+++|+|++|||||+||.++++.+ +.+++.++.++++...... .......+++... ...+|+|||+...-
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4579999999999999999999986 6778888888776543211 1111222333322 34599999995321
Q ss_pred cCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCC-CC----CChhhhccCCc---eeEEEeCCCCH
Q 044198 296 PKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP-NS----IDPALRRSGRF---DKEIDIGVPDE 359 (772)
Q Consensus 296 ~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~-~~----ld~al~r~gRf---~~~i~i~~p~~ 359 (772)
. .......|.++++...... ..+|.|||.+ +. ++.++.+ |+ ...+.+.-++.
T Consensus 192 ~---------t~~~~~~l~~iin~r~~~~-~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 D---------TEWAREKVYNIIDSRYRKG-LPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred C---------CHHHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 1 1233466777777654333 3355566654 22 3555554 53 23355555543
No 381
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.51 E-value=3.4e-07 Score=99.07 Aligned_cols=127 Identities=24% Similarity=0.362 Sum_probs=84.5
Q ss_pred CCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh----CCeEEEEechhh
Q 044198 184 DDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET----GCYFLCINGPEI 259 (772)
Q Consensus 184 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l----~~~~~~v~~~~~ 259 (772)
....++++.|.+...+++++.+.. . .....+|||+|++||||+.+|+.|.... ..+|+.+||..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~---~--------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA---Y--------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHh---h--------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 345677889999988888887765 1 1335679999999999999999998543 568999999876
Q ss_pred hhhccc-----c-------hHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc------
Q 044198 260 MSKMAG-----E-------SESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK------ 321 (772)
Q Consensus 260 ~~~~~g-----~-------~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~------ 321 (772)
...... . ....-..+|+.|.. .+||+|||+.+.+. ....|+..++.-.
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP~~-----------~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLPPE-----------GQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhCCHh-----------HHHHHHHHHHcCceEecCC
Confidence 432110 0 01111223444433 48999999988653 2366777776411
Q ss_pred ---ccCceEEEEeeCCC
Q 044198 322 ---SRAHVMVIGATNRP 335 (772)
Q Consensus 322 ---~~~~v~vI~atn~~ 335 (772)
...+|.+|+||+..
T Consensus 208 ~~~~~~dVRli~AT~~~ 224 (403)
T COG1221 208 SQPRPVDVRLICATTED 224 (403)
T ss_pred CCCcCCCceeeeccccC
Confidence 12468888888743
No 382
>PRK04132 replication factor C small subunit; Provisional
Probab=98.50 E-value=1e-06 Score=104.28 Aligned_cols=148 Identities=21% Similarity=0.241 Sum_probs=106.5
Q ss_pred EEEEC--CCCCcHHHHHHHHHHHh-----CCeEEEEechhhhhhcccchHHHHHHHHHHHHHcC------CceEEecccc
Q 044198 226 ILLHG--PPGTGKTLLARAIANET-----GCYFLCINGPEIMSKMAGESESNLREAFNVAEKNA------PSIIFIDEID 292 (772)
Q Consensus 226 vLL~G--ppGtGKT~Lar~la~~l-----~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~------p~il~iDEid 292 (772)
-+..| |++.||||+|+++|+++ +.+++.+|+++..+ ...++.+...+.... ..|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 46678 99999999999999997 45789999987422 234555554433222 2599999999
Q ss_pred ccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhcc
Q 044198 293 SIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKN 372 (772)
Q Consensus 293 ~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~ 372 (772)
.+.. ...+.|+..|+... .++.+|.+||+++.+.+++++ |. ..+.|..|+.++....|+..+..
T Consensus 641 ~Lt~-----------~AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~~ 704 (846)
T PRK04132 641 ALTQ-----------DAQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAEN 704 (846)
T ss_pred cCCH-----------HHHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHHh
Confidence 8853 23477888887643 467888899999999999998 76 45899999998888888766543
Q ss_pred --CCcccccchhHHHHHhcCCchhhH
Q 044198 373 --MKLAEDVNLETVARETHGFVGADL 396 (772)
Q Consensus 373 --~~l~~~~~l~~la~~t~g~~~~dl 396 (772)
+.+. +..+..++..+.|-...-+
T Consensus 705 Egi~i~-~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 705 EGLELT-EEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred cCCCCC-HHHHHHHHHHcCCCHHHHH
Confidence 3332 3357777777776544333
No 383
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.49 E-value=6.8e-07 Score=105.20 Aligned_cols=161 Identities=19% Similarity=0.168 Sum_probs=91.1
Q ss_pred ccchHHHHHHHhhhc-cccCCchH---H----HhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhC-------CcEEEEe
Q 044198 464 IGGLDTVKRELQETV-QYPVEHPE---M----FEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQ-------ANFISIK 528 (772)
Q Consensus 464 i~g~~~~k~~l~~~i-~~~~~~~~---~----~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~-------~~~i~v~ 528 (772)
|.|.+.+|+.+.-.+ ...-+... . +....++...++||.|.||||||.+|++++.... .++..+.
T Consensus 452 I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vg 531 (915)
T PTZ00111 452 IKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVG 531 (915)
T ss_pred EECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcccc
Confidence 567888888764332 22111100 0 0002234455799999999999999999998653 2333332
Q ss_pred cccchhccccc-chHHH--HHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC---------
Q 044198 529 GPELLTMWFGE-SEANV--RDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS--------- 596 (772)
Q Consensus 529 ~~~l~~~~vg~-se~~i--~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~--------- 596 (772)
...... +.+. +.... ...+..|. ..+++|||+|.+- ......|+..|+.-.
T Consensus 532 LTa~~~-~~d~~tG~~~le~GaLvlAd---gGtL~IDEidkms-------------~~~Q~aLlEaMEqqtIsI~KaGi~ 594 (915)
T PTZ00111 532 LTASIK-FNESDNGRAMIQPGAVVLAN---GGVCCIDELDKCH-------------NESRLSLYEVMEQQTVTIAKAGIV 594 (915)
T ss_pred ccchhh-hcccccCcccccCCcEEEcC---CCeEEecchhhCC-------------HHHHHHHHHHHhCCEEEEecCCcc
Confidence 222111 0000 00000 00111222 2499999999983 445667888886431
Q ss_pred --CCCcEEEEeecCCCC-------------CCCccccCCCCcccccc-CCCCCHHHHHHHHHH
Q 044198 597 --AKKTVFVIGATNRPD-------------MIDPALLRPGRLDQLIY-IPLPDEHSRLQIFKS 643 (772)
Q Consensus 597 --~~~~v~vi~aTn~~~-------------~ld~allrpgRf~~~i~-~~~p~~~~r~~Il~~ 643 (772)
-..++-||||+|... .|.+++++ |||.++. .+.|+.+.=..|.++
T Consensus 595 ~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~h 655 (915)
T PTZ00111 595 ATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLS 655 (915)
T ss_pred eecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHH
Confidence 135789999999741 45688998 9996543 456776554454443
No 384
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.47 E-value=6.8e-07 Score=103.75 Aligned_cols=134 Identities=19% Similarity=0.306 Sum_probs=88.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCC--eEEEEechhhhhhcccchH--HHHH---HHHH--HHHHcCCceEEecccccc
Q 044198 224 KGILLHGPPGTGKTLLARAIANETGC--YFLCINGPEIMSKMAGESE--SNLR---EAFN--VAEKNAPSIIFIDEIDSI 294 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l~~--~~~~v~~~~~~~~~~g~~~--~~l~---~~f~--~a~~~~p~il~iDEid~l 294 (772)
.+|||.|+||||||++++++++.++. +|+.++.........|... ..+. ..|+ ........+||+||++.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 46999999999999999999998864 4777764322233333210 0000 0000 000112359999999887
Q ss_pred ccCCCCCchhhHHHHHHHHHHHhhccc-----------ccCceEEEEeeCCCC---CCChhhhccCCceeEEEeC-CCCH
Q 044198 295 APKREKTHGEVEKRIVSQLLTLMDGMK-----------SRAHVMVIGATNRPN---SIDPALRRSGRFDKEIDIG-VPDE 359 (772)
Q Consensus 295 ~~~~~~~~~~~~~~v~~~L~~lld~~~-----------~~~~v~vI~atn~~~---~ld~al~r~gRf~~~i~i~-~p~~ 359 (772)
.+ .+.+.|++.|+.-. ...++.+|+++|+.+ .+.+++.. ||...+.+. +|+.
T Consensus 97 ~~-----------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~ 163 (589)
T TIGR02031 97 DD-----------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQ 163 (589)
T ss_pred CH-----------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCH
Confidence 53 44567777775321 124688999999875 78899988 999888776 4577
Q ss_pred HHHHHHHHHHh
Q 044198 360 VGRLEVLRIHT 370 (772)
Q Consensus 360 ~~r~~Il~~~~ 370 (772)
++|.+|++...
T Consensus 164 ~er~eil~~~~ 174 (589)
T TIGR02031 164 DLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHH
Confidence 77889887654
No 385
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7.5e-08 Score=104.43 Aligned_cols=49 Identities=31% Similarity=0.468 Sum_probs=40.3
Q ss_pred CCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 044198 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG 248 (772)
Q Consensus 185 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~ 248 (772)
...|.||.|++..+..+.....- .+++|++||||||||+||+.+...++
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG---------------gHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG---------------GHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc---------------CCcEEEecCCCCchHHhhhhhcccCC
Confidence 34788999999998887654432 57899999999999999999988664
No 386
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.43 E-value=6.3e-07 Score=102.10 Aligned_cols=151 Identities=27% Similarity=0.443 Sum_probs=93.5
Q ss_pred CccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHH-----------hCCeEEEE
Q 044198 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANE-----------TGCYFLCI 254 (772)
Q Consensus 186 ~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~-----------l~~~~~~v 254 (772)
..|+++.|.+..++++++.+...- ....+|||+|++||||+++|++|... .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA-----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 467889999999999888775411 23567999999999999999999987 35689999
Q ss_pred echhhhhhc-----ccchHH--------HHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc
Q 044198 255 NGPEIMSKM-----AGESES--------NLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK 321 (772)
Q Consensus 255 ~~~~~~~~~-----~g~~~~--------~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~ 321 (772)
||..+.... .|..+. .-...|+.+. ...||||||+.+.. .+...|+..++...
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~-----------~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPL-----------PLQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCH-----------HHHHHHHhhhhcCe
Confidence 997653211 111000 0011333332 35899999998753 23455666664321
Q ss_pred ---------ccCceEEEEeeCCCCCCChhhhccCCcee-------EEEeCCCCHHHHHH
Q 044198 322 ---------SRAHVMVIGATNRPNSIDPALRRSGRFDK-------EIDIGVPDEVGRLE 364 (772)
Q Consensus 322 ---------~~~~v~vI~atn~~~~ld~al~r~gRf~~-------~i~i~~p~~~~r~~ 364 (772)
...++-+|++|+.. +.... ..|+|.. .+.+..|...+|.+
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~--L~~~v-~~g~Fr~dL~yrL~~~~I~lPPLReR~e 406 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCD--LEEDV-RQGRFRRDLFYRLSILRLQLPPLRERVA 406 (538)
T ss_pred EEecCCCceeccceEEEEecCCC--HHHHH-hcccchHHHHHHhcCCeecCCChhhchh
Confidence 12356788888765 22211 1233321 25666777666653
No 387
>PRK08181 transposase; Validated
Probab=98.43 E-value=1.3e-06 Score=91.04 Aligned_cols=100 Identities=25% Similarity=0.411 Sum_probs=64.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcccc-hHHHHHHHHHHHHHcCCceEEeccccccccCC
Q 044198 223 PKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKMAGE-SESNLREAFNVAEKNAPSIIFIDEIDSIAPKR 298 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~~g~-~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~ 298 (772)
..+++|+||||||||+|+.+++.++ +..+++++..++....... ........++.. ..+.+|+|||++.....
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~- 182 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD- 182 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC-
Confidence 5689999999999999999999765 6677888887776643211 111223334333 24569999999876432
Q ss_pred CCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCC
Q 044198 299 EKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP 335 (772)
Q Consensus 299 ~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~ 335 (772)
......|.++++....+. .+|.|||.+
T Consensus 183 --------~~~~~~Lf~lin~R~~~~--s~IiTSN~~ 209 (269)
T PRK08181 183 --------QAETSVLFELISARYERR--SILITANQP 209 (269)
T ss_pred --------HHHHHHHHHHHHHHHhCC--CEEEEcCCC
Confidence 122355666776544433 345577765
No 388
>PRK09183 transposase/IS protein; Provisional
Probab=98.43 E-value=3.8e-07 Score=95.08 Aligned_cols=102 Identities=22% Similarity=0.320 Sum_probs=64.7
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhccccc-chHHHHHHHHHHHhCCCeEEEEcCchhhhhc
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGE-SEANVRDVFDKARQSAPCVLFFDELDSIAIQ 570 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~-se~~i~~vf~~a~~~~p~ilfiDEid~l~~~ 570 (772)
...+++|+||||||||+||.+++... +..+..++.+++...+... ....+..+|+... ..+.+++|||++.....
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-~~~dlLiiDdlg~~~~~ 179 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-MAPRLLIIDEIGYLPFS 179 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-cCCCEEEEcccccCCCC
Confidence 35679999999999999999998664 6677777877776543211 1223555666543 35579999999765221
Q ss_pred cCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCC
Q 044198 571 RGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRP 610 (772)
Q Consensus 571 r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 610 (772)
..-.+.|+..++...... -+|.|||.+
T Consensus 180 -----------~~~~~~lf~li~~r~~~~--s~iiTsn~~ 206 (259)
T PRK09183 180 -----------QEEANLFFQVIAKRYEKG--SMILTSNLP 206 (259)
T ss_pred -----------hHHHHHHHHHHHHHHhcC--cEEEecCCC
Confidence 122334555554433222 267788875
No 389
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.43 E-value=2e-06 Score=92.89 Aligned_cols=145 Identities=21% Similarity=0.250 Sum_probs=85.3
Q ss_pred cCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc-----
Q 044198 192 GGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKM----- 263 (772)
Q Consensus 192 ~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~----- 263 (772)
.|.+..++++.+.+...- ....+|||+|++||||+++|++|.... +.+|+.+||..+....
T Consensus 2 iG~S~~m~~~~~~~~~~a-----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLA-----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CcCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 355566666655554311 235679999999999999999998765 3689999997543211
Q ss_pred ccchH-------HHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc---------ccCceE
Q 044198 264 AGESE-------SNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK---------SRAHVM 327 (772)
Q Consensus 264 ~g~~~-------~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~---------~~~~v~ 327 (772)
.|... ..-...|..+ ...+|||||++.+.. .+...|+..++... ...++.
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASL-----------LVQEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCCH-----------HHHHHHHHHHHcCcEEecCCCceeccceE
Confidence 01000 0000112222 346999999998753 33455666654321 124678
Q ss_pred EEEeeCCC-------CCCChhhhccCCceeEEEeCCCCHHHHHH
Q 044198 328 VIGATNRP-------NSIDPALRRSGRFDKEIDIGVPDEVGRLE 364 (772)
Q Consensus 328 vI~atn~~-------~~ld~al~r~gRf~~~i~i~~p~~~~r~~ 364 (772)
+|++|+.. ..+.+.|.. ||.. +.+..|...+|.+
T Consensus 137 iI~at~~~l~~~~~~g~fr~dL~~--rl~~-~~i~lPpLReR~e 177 (329)
T TIGR02974 137 LVCATNADLPALAAEGRFRADLLD--RLAF-DVITLPPLRERQE 177 (329)
T ss_pred EEEechhhHHHHhhcCchHHHHHH--Hhcc-hhcCCCchhhhhh
Confidence 88888764 133344443 5532 4566666666644
No 390
>PRK06526 transposase; Provisional
Probab=98.42 E-value=2.4e-07 Score=95.98 Aligned_cols=71 Identities=23% Similarity=0.328 Sum_probs=47.4
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhccccc-chHHHHHHHHHHHhCCCeEEEEcCchhh
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGE-SEANVRDVFDKARQSAPCVLFFDELDSI 567 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~-se~~i~~vf~~a~~~~p~ilfiDEid~l 567 (772)
...+++|+||||||||+||.+++.++ +..+..+..++++...... ........+... ..+.+|+|||++.+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~ 171 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYI 171 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccC
Confidence 35679999999999999999999875 5566666677665543211 111222233332 23579999999876
No 391
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.41 E-value=1.4e-06 Score=96.01 Aligned_cols=150 Identities=25% Similarity=0.402 Sum_probs=95.4
Q ss_pred ccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc
Q 044198 187 GYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKM 263 (772)
Q Consensus 187 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~ 263 (772)
...++.|....++++++.+..-- ....+|||+|++||||-++||+|.... +.||+.+||..+....
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA-----------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVA-----------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 45678999999999988776411 234579999999999999999999876 4599999996653221
Q ss_pred -----cc----chHHH---HHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcc---------cc
Q 044198 264 -----AG----ESESN---LREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGM---------KS 322 (772)
Q Consensus 264 -----~g----~~~~~---l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~---------~~ 322 (772)
.| ..... -...|+.|.. ..||+|||..+.. .+...|+..+... .-
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mpl-----------~~Q~kLLRvLqe~~~~rvG~~~~i 273 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMPL-----------ELQVKLLRVLQEREFERVGGNKPI 273 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCCH-----------HHHHHHHHHHHcCeeEecCCCccc
Confidence 11 10111 1123444443 4899999976642 3344555555421 12
Q ss_pred cCceEEEEeeCCCCCCChhhhccCCce-------eEEEeCCCCHHHHHH
Q 044198 323 RAHVMVIGATNRPNSIDPALRRSGRFD-------KEIDIGVPDEVGRLE 364 (772)
Q Consensus 323 ~~~v~vI~atn~~~~ld~al~r~gRf~-------~~i~i~~p~~~~r~~ 364 (772)
+.+|-||++||.. |..... .|+|- .++.+..|...+|.+
T Consensus 274 ~vdvRiIaaT~~d--L~~~v~-~G~FReDLyyRLnV~~i~iPpLRER~E 319 (464)
T COG2204 274 KVDVRIIAATNRD--LEEEVA-AGRFREDLYYRLNVVPLRLPPLRERKE 319 (464)
T ss_pred ceeeEEEeecCcC--HHHHHH-cCCcHHHHHhhhccceecCCcccccch
Confidence 3578899999975 332222 23442 236677777777654
No 392
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.41 E-value=2.9e-07 Score=98.80 Aligned_cols=100 Identities=25% Similarity=0.362 Sum_probs=63.7
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhccccc---chHHHHHHHHHHHhCCCeEEEEcCchhhhh
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGE---SEANVRDVFDKARQSAPCVLFFDELDSIAI 569 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~---se~~i~~vf~~a~~~~p~ilfiDEid~l~~ 569 (772)
..+++|+||||||||+||.++|+++ +..++.++.++++..+... ........++... ...+|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCCC
Confidence 3779999999999999999999986 6788888888887654211 1111122233333 336999999966521
Q ss_pred ccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCC
Q 044198 570 QRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNR 609 (772)
Q Consensus 570 ~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~ 609 (772)
.+...++|...++....... -+|.|||.
T Consensus 261 -----------t~~~~~~Lf~iin~R~~~~k-~tIiTSNl 288 (329)
T PRK06835 261 -----------TEFSKSELFNLINKRLLRQK-KMIISTNL 288 (329)
T ss_pred -----------CHHHHHHHHHHHHHHHHCCC-CEEEECCC
Confidence 23334556666554432222 36777775
No 393
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.40 E-value=2.4e-06 Score=92.34 Aligned_cols=149 Identities=19% Similarity=0.256 Sum_probs=90.7
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CeEEEEechhhhhh--
Q 044198 188 YEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG---CYFLCINGPEIMSK-- 262 (772)
Q Consensus 188 ~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~---~~~~~v~~~~~~~~-- 262 (772)
++++.|.+..++.+.+.+.... ....+|||+|++||||+++|+++..... .+|+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 4567788888888877765421 2356799999999999999999987653 58999999765311
Q ss_pred ---cccchH-------HHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc---------cc
Q 044198 263 ---MAGESE-------SNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK---------SR 323 (772)
Q Consensus 263 ---~~g~~~-------~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~---------~~ 323 (772)
..|... ......|.. .....|||||++.+.. .+...|+.+++... ..
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~~-----------~~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM-----------LVQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhc---cCCCeEEeCChhhCCH-----------HHHHHHHHHHhcCcEEeCCCCceee
Confidence 111000 000112222 2345899999998853 23455666664321 11
Q ss_pred CceEEEEeeCCC-------CCCChhhhccCCceeEEEeCCCCHHHHHH
Q 044198 324 AHVMVIGATNRP-------NSIDPALRRSGRFDKEIDIGVPDEVGRLE 364 (772)
Q Consensus 324 ~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~i~~p~~~~r~~ 364 (772)
.++.+|++|+.. ..+.+.|.. ||.. +.+..|...+|.+
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~-~~i~lPpLReR~e 184 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RLAF-DVVQLPPLRERQS 184 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hcCC-CEEECCChhhhhh
Confidence 357888888764 234455554 5532 4455566655543
No 394
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.40 E-value=5.3e-07 Score=96.05 Aligned_cols=101 Identities=24% Similarity=0.352 Sum_probs=64.0
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhccccc-chHHHHHHHHHHHhCCCeEEEEcCchhhhhc
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGE-SEANVRDVFDKARQSAPCVLFFDELDSIAIQ 570 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~-se~~i~~vf~~a~~~~p~ilfiDEid~l~~~ 570 (772)
...|++|+||+|||||+|+.|+|+++ +.++..+..++++..+... ........++.... ..+|+|||+..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~--~dlLiIDDiG~e~-- 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKE--APVLMLDDIGAEQ-- 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcC--CCEEEEecCCCcc--
Confidence 45789999999999999999999987 6778888888876554221 11123344444433 3699999996531
Q ss_pred cCCCCCCCCc-hhHHHHHHHHH-hcCCCCCCcEEEEeecCCC
Q 044198 571 RGSSVGDGGG-VDRIVNQLLTE-MDGLSAKKTVFVIGATNRP 610 (772)
Q Consensus 571 r~~~~~~~~~-~~~~~~~lL~~-ld~~~~~~~v~vi~aTn~~ 610 (772)
.+.+ .+.++..+++. |. .+...|.|||.+
T Consensus 231 ------~s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 231 ------MSSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred ------ccHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 1111 12344444432 22 234588899975
No 395
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.39 E-value=5.6e-06 Score=95.19 Aligned_cols=152 Identities=25% Similarity=0.368 Sum_probs=93.2
Q ss_pred CCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh
Q 044198 184 DDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIM 260 (772)
Q Consensus 184 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~ 260 (772)
...+|+++.|.+..++++.+.+..-- ....+|||+|++||||+++|+++.... ..+|+.+||..+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A-----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLA-----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 45688899999988888766664211 124569999999999999999997664 3589999997653
Q ss_pred hhc-----ccchH-------HHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc-------
Q 044198 261 SKM-----AGESE-------SNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK------- 321 (772)
Q Consensus 261 ~~~-----~g~~~-------~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~------- 321 (772)
... .|... ..-...|+.+ ....|||||++.+.+ .+...|++++..-.
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~ 333 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSP-----------RMQAKLLRFLNDGTFRRVGED 333 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCH-----------HHHHHHHHHHhcCCcccCCCC
Confidence 211 11000 0001123332 245899999998853 23355555554311
Q ss_pred --ccCceEEEEeeCCC-------CCCChhhhccCCceeEEEeCCCCHHHHH
Q 044198 322 --SRAHVMVIGATNRP-------NSIDPALRRSGRFDKEIDIGVPDEVGRL 363 (772)
Q Consensus 322 --~~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~i~~p~~~~r~ 363 (772)
...++.+|++|+.+ ..+.+.|.. |+.. +.+..|...+|.
T Consensus 334 ~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~-~~i~lPpLreR~ 381 (520)
T PRK10820 334 HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNV-LTLNLPPLRDRP 381 (520)
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCe-eEEeCCCcccCh
Confidence 12357788888664 234444544 5543 556666666654
No 396
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.38 E-value=8.4e-07 Score=91.11 Aligned_cols=100 Identities=24% Similarity=0.294 Sum_probs=65.1
Q ss_pred CceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhccccc---chHHHHHHHHHHHhCCCeEEEEcCchhhhhc
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGE---SEANVRDVFDKARQSAPCVLFFDELDSIAIQ 570 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~---se~~i~~vf~~a~~~~p~ilfiDEid~l~~~ 570 (772)
.+++|+|+||||||+|+.++|..+ +..++.++.++++..+.+. .......+++... ..++|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~-- 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT-- 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC--
Confidence 479999999999999999999987 6778888888887654321 1122334555443 35799999997752
Q ss_pred cCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCC
Q 044198 571 RGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRP 610 (772)
Q Consensus 571 r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 610 (772)
.......++.+++..= . ..+..+|.|||..
T Consensus 176 ------~s~~~~~~l~~Ii~~R---y-~~~~~tiitSNl~ 205 (244)
T PRK07952 176 ------ESRYEKVIINQIVDRR---S-SSKRPTGMLTNSN 205 (244)
T ss_pred ------CCHHHHHHHHHHHHHH---H-hCCCCEEEeCCCC
Confidence 1112334454554432 1 1233578888864
No 397
>PRK09183 transposase/IS protein; Provisional
Probab=98.38 E-value=1.4e-06 Score=90.97 Aligned_cols=103 Identities=21% Similarity=0.374 Sum_probs=64.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcccc-hHHHHHHHHHHHHHcCCceEEecccccccc
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKMAGE-SESNLREAFNVAEKNAPSIIFIDEIDSIAP 296 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~~g~-~~~~l~~~f~~a~~~~p~il~iDEid~l~~ 296 (772)
....+++|+||||||||+|+.+++..+ +..+.++++.++....... ....+..+++.. ...+.+++|||++....
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~ 178 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF 178 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC
Confidence 346789999999999999999998764 5667777877766433211 112244555543 24567999999976533
Q ss_pred CCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCC
Q 044198 297 KREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP 335 (772)
Q Consensus 297 ~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~ 335 (772)
.. ...+.|..+++....+.. +|.|+|.+
T Consensus 179 ~~---------~~~~~lf~li~~r~~~~s--~iiTsn~~ 206 (259)
T PRK09183 179 SQ---------EEANLFFQVIAKRYEKGS--MILTSNLP 206 (259)
T ss_pred Ch---------HHHHHHHHHHHHHHhcCc--EEEecCCC
Confidence 21 122456666665444433 45577754
No 398
>PF13173 AAA_14: AAA domain
Probab=98.38 E-value=2e-06 Score=79.73 Aligned_cols=118 Identities=28% Similarity=0.315 Sum_probs=68.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhC--CeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCC
Q 044198 224 KGILLHGPPGTGKTLLARAIANETG--CYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKT 301 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l~--~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~ 301 (772)
+-++|+||.||||||+++.+++.+. ..+++++..+.......... +...+.......+.++||||++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~------ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP------ 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc------
Confidence 4689999999999999999998876 67788887655432111111 2233322222256799999998762
Q ss_pred chhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCC----ChhhhccCCceeEEEeCCCCHHH
Q 044198 302 HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSI----DPALRRSGRFDKEIDIGVPDEVG 361 (772)
Q Consensus 302 ~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~l----d~al~r~gRf~~~i~i~~p~~~~ 361 (772)
.+...+..+.|.. .++.++.|+.....+ ...+ .||.. .+++.+.+..+
T Consensus 75 ------~~~~~lk~l~d~~---~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 ------DWEDALKFLVDNG---PNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred ------cHHHHHHHHHHhc---cCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 2334445555532 233444444333222 2233 35765 46777766554
No 399
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.38 E-value=3.8e-06 Score=86.01 Aligned_cols=180 Identities=27% Similarity=0.361 Sum_probs=96.9
Q ss_pred cCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe---EEEEec---h------hh
Q 044198 192 GGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY---FLCING---P------EI 259 (772)
Q Consensus 192 ~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~---~~~v~~---~------~~ 259 (772)
.|-+++++.|.+++.. .+...++|+||.|+|||+|++.+...+... .+++.. . .+
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 4667777777766643 235679999999999999999999987321 111111 0 00
Q ss_pred -------------hhh-c------------ccchHHHHHHHHHHHHHcC-CceEEeccccccc-cCCCCCchhhHHHHHH
Q 044198 260 -------------MSK-M------------AGESESNLREAFNVAEKNA-PSIIFIDEIDSIA-PKREKTHGEVEKRIVS 311 (772)
Q Consensus 260 -------------~~~-~------------~g~~~~~l~~~f~~a~~~~-p~il~iDEid~l~-~~~~~~~~~~~~~v~~ 311 (772)
... . .......+..+++...... ..+|+|||++.+. ... ....+..
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~~~~~~ 142 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE------EDKDFLK 142 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TTHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc------chHHHHH
Confidence 000 0 0122445666666665533 4799999999997 211 1134566
Q ss_pred HHHHHhhcccccCceEEEEeeCCCC------CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCC-c-ccccchhH
Q 044198 312 QLLTLMDGMKSRAHVMVIGATNRPN------SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMK-L-AEDVNLET 383 (772)
Q Consensus 312 ~L~~lld~~~~~~~v~vI~atn~~~------~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~-l-~~~~~l~~ 383 (772)
.|.++++...+..++.+|.+..... .-...+ .+|+.. +.+++.+.++..++++....... + .++.+++.
T Consensus 143 ~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~--~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 219 (234)
T PF01637_consen 143 SLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPL--FGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEE 219 (234)
T ss_dssp HHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTT--TT---E-EEE----HHHHHHHHHHHHHCC------HHHHHH
T ss_pred HHHHHHhhccccCCceEEEECCchHHHHHhhcccCcc--ccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHH
Confidence 7777777655555555554443321 111122 247777 99999999999999988765541 1 24456777
Q ss_pred HHHHhcCCch
Q 044198 384 VARETHGFVG 393 (772)
Q Consensus 384 la~~t~g~~~ 393 (772)
+...+.|..+
T Consensus 220 i~~~~gG~P~ 229 (234)
T PF01637_consen 220 IYSLTGGNPR 229 (234)
T ss_dssp HHHHHTT-HH
T ss_pred HHHHhCCCHH
Confidence 7777777643
No 400
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.37 E-value=6.5e-06 Score=82.95 Aligned_cols=151 Identities=20% Similarity=0.314 Sum_probs=105.8
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh-CCc----------------------------EEEEecccchhcccccchHH-HH
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC-QAN----------------------------FISIKGPELLTMWFGESEAN-VR 545 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~-~~~----------------------------~i~v~~~~l~~~~vg~se~~-i~ 545 (772)
..++++|||+|+||-|.+.++-+++ |.. .+.++.+| .|...+. +.
T Consensus 34 ~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQ 108 (351)
T KOG2035|consen 34 FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQ 108 (351)
T ss_pred CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhh-----cCcccHHHHH
Confidence 3579999999999999999988776 311 11222222 2433332 45
Q ss_pred HHHHHHHhCC---------CeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCcc
Q 044198 546 DVFDKARQSA---------PCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPA 616 (772)
Q Consensus 546 ~vf~~a~~~~---------p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~a 616 (772)
++.+...+.. ..+++|-|+|.| +......|-..|+...++ .-+|...|..+.+-++
T Consensus 109 ellKevAQt~qie~~~qr~fKvvvi~ead~L-------------T~dAQ~aLRRTMEkYs~~--~RlIl~cns~SriIep 173 (351)
T KOG2035|consen 109 ELLKEVAQTQQIETQGQRPFKVVVINEADEL-------------TRDAQHALRRTMEKYSSN--CRLILVCNSTSRIIEP 173 (351)
T ss_pred HHHHHHHhhcchhhccccceEEEEEechHhh-------------hHHHHHHHHHHHHHHhcC--ceEEEEecCcccchhH
Confidence 5555544332 369999999999 455677788999987654 4566777888888888
Q ss_pred ccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCccc-HHHHHHHcCCCCHHHHHH
Q 044198 617 LLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDID-LKAIAKYTHGFSGADITE 673 (772)
Q Consensus 617 llrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~-~~~la~~~~g~sg~di~~ 673 (772)
+.+ |+- .|.+|.|+.++...++...+++-.+.-+.+ +..+|+.+ +++++.
T Consensus 174 IrS--RCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS----~~nLRr 224 (351)
T KOG2035|consen 174 IRS--RCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKS----NRNLRR 224 (351)
T ss_pred Hhh--hee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh----cccHHH
Confidence 887 874 899999999999999999998877764433 44555544 446654
No 401
>PRK12377 putative replication protein; Provisional
Probab=98.37 E-value=9.3e-07 Score=91.01 Aligned_cols=101 Identities=22% Similarity=0.203 Sum_probs=62.3
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhcccccc--hHHHHHHHHHHHhCCCeEEEEcCchhhhhc
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGES--EANVRDVFDKARQSAPCVLFFDELDSIAIQ 570 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~s--e~~i~~vf~~a~~~~p~ilfiDEid~l~~~ 570 (772)
..+++|+||||||||+||.++|+.+ +..++.++.++++..+...- ......+++... ...+|+|||+.....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~--~~dLLiIDDlg~~~~- 177 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELC--KVDLLVLDEIGIQRE- 177 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCCC-
Confidence 3579999999999999999999887 56678888888776432110 011223444433 346999999966421
Q ss_pred cCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCC
Q 044198 571 RGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRP 610 (772)
Q Consensus 571 r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 610 (772)
++.....|...++.-.. ...-+|.|||..
T Consensus 178 ----------s~~~~~~l~~ii~~R~~-~~~ptiitSNl~ 206 (248)
T PRK12377 178 ----------TKNEQVVLNQIIDRRTA-SMRSVGMLTNLN 206 (248)
T ss_pred ----------CHHHHHHHHHHHHHHHh-cCCCEEEEcCCC
Confidence 11223344444443221 123467889974
No 402
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.37 E-value=3.1e-07 Score=90.12 Aligned_cols=101 Identities=26% Similarity=0.370 Sum_probs=61.3
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhccccc-chHHHHHHHHHHHhCCCeEEEEcCchhhhhc
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGE-SEANVRDVFDKARQSAPCVLFFDELDSIAIQ 570 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~-se~~i~~vf~~a~~~~p~ilfiDEid~l~~~ 570 (772)
...+++|+||||||||+||.+++.++ +.+...++.++++..+-.. ........++..... .+|+|||+....
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~--dlLilDDlG~~~-- 121 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRV--DLLILDDLGYEP-- 121 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTS--SCEEEETCTSS---
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccc--cEecccccceee--
Confidence 45689999999999999999999875 7788889999987664221 112233445554433 599999985331
Q ss_pred cCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCC
Q 044198 571 RGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRP 610 (772)
Q Consensus 571 r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 610 (772)
..+...+.|...++.-..+ + -.|.|||..
T Consensus 122 ---------~~~~~~~~l~~ii~~R~~~-~-~tIiTSN~~ 150 (178)
T PF01695_consen 122 ---------LSEWEAELLFEIIDERYER-K-PTIITSNLS 150 (178)
T ss_dssp -----------HHHHHCTHHHHHHHHHT---EEEEEESS-
T ss_pred ---------ecccccccchhhhhHhhcc-c-CeEeeCCCc
Confidence 1233344455555543332 2 466699864
No 403
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.37 E-value=6.5e-06 Score=94.83 Aligned_cols=78 Identities=23% Similarity=0.271 Sum_probs=49.8
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhcc------cc----------------------cc
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMW------FG----------------------ES 540 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~------vg----------------------~s 540 (772)
|++....++++|+||+|||+++..++... +.+.+.+...+-...+ .| ..
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 56777789999999999999999887543 5566555443211100 00 00
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcCchhhhh
Q 044198 541 EANVRDVFDKARQSAPCVLFFDELDSIAI 569 (772)
Q Consensus 541 e~~i~~vf~~a~~~~p~ilfiDEid~l~~ 569 (772)
+..+..+-+......+.+++||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 12233344445556788999999998864
No 404
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=1.6e-06 Score=93.32 Aligned_cols=132 Identities=16% Similarity=0.290 Sum_probs=90.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCeE-------------------------EEEechhhhh--------------
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANETGCYF-------------------------LCINGPEIMS-------------- 261 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l~~~~-------------------------~~v~~~~~~~-------------- 261 (772)
..++.+||+||+|+||+++|+.+|+.+.+.. ..+.. +...
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p-~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRP-EALAAEAPGAADEAKEAD 97 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec-ccccccccccccccccch
Confidence 4467899999999999999999998774421 11110 0000
Q ss_pred --hc--------ccchHHHHHHHHHHHH----HcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceE
Q 044198 262 --KM--------AGESESNLREAFNVAE----KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVM 327 (772)
Q Consensus 262 --~~--------~g~~~~~l~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~ 327 (772)
+. ..-.-..++.+.+... .....|++||++|.+.. ...+.|+..++. ...+++
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEE--Pp~~t~ 164 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-----------AAANALLKTLEE--PPPGTV 164 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH-----------HHHHHHHHHhcC--CCcCcE
Confidence 00 0011234555544332 22345999999998843 345788888885 455788
Q ss_pred EEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHH
Q 044198 328 VIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIH 369 (772)
Q Consensus 328 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~ 369 (772)
+|.+|+.++.|.|.+++ |. ..+.|++|+.++..+.|...
T Consensus 165 fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 165 FLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 88999999999999998 87 45899999999998888654
No 405
>PF13173 AAA_14: AAA domain
Probab=98.36 E-value=1.6e-06 Score=80.39 Aligned_cols=119 Identities=18% Similarity=0.255 Sum_probs=69.2
Q ss_pred CceEEeCCCCCchhHHHHHHHHHhC--CcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCC
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSS 574 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~~--~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~ 574 (772)
+.++|+||.|||||++++.++..+. .+++.++..+........ ..+.+.+.......+.++|||||+.+-.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~iDEiq~~~~----- 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLAD--PDLLEYFLELIKPGKKYIFIDEIQYLPD----- 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhh--hhhHHHHHHhhccCCcEEEEehhhhhcc-----
Confidence 4589999999999999999998876 777888877654321111 1022333332222557999999988721
Q ss_pred CCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCc---cccCCCCccccccCCCCCHHH
Q 044198 575 VGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDP---ALLRPGRLDQLIYIPLPDEHS 636 (772)
Q Consensus 575 ~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~---allrpgRf~~~i~~~~p~~~~ 636 (772)
....+..+. |.. .++-++.|+.....+.. ..+ +||.. .+.+.|.+..|
T Consensus 76 ------~~~~lk~l~---d~~---~~~~ii~tgS~~~~l~~~~~~~l-~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 76 ------WEDALKFLV---DNG---PNIKIILTGSSSSLLSKDIAESL-AGRVI-EIELYPLSFRE 126 (128)
T ss_pred ------HHHHHHHHH---Hhc---cCceEEEEccchHHHhhcccccC-CCeEE-EEEECCCCHHH
Confidence 122233333 321 23344444443333321 223 47887 77777777654
No 406
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.35 E-value=1.2e-06 Score=99.79 Aligned_cols=126 Identities=26% Similarity=0.398 Sum_probs=81.7
Q ss_pred CCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh
Q 044198 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMS 261 (772)
Q Consensus 185 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~ 261 (772)
...|+++.|.+..++.+++.+...- ....+|||+|++||||+++|++|.... +.+|+.+||..+..
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A-----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYA-----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 3567889999999999887775411 234679999999999999999998764 46899999976532
Q ss_pred h-----cccchHH--------HHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc-------
Q 044198 262 K-----MAGESES--------NLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK------- 321 (772)
Q Consensus 262 ~-----~~g~~~~--------~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~------- 321 (772)
. ..|..+. .-..+|+.+ ....|||||++.+.. .+...|+..++...
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~-----------~~Q~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMPL-----------PLQTRLLRVLEEREVVRVGGT 342 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCCH-----------HHHHHHHHHHhcCcEEecCCC
Confidence 1 1110000 011123323 235899999998753 23455666554321
Q ss_pred --ccCceEEEEeeCCC
Q 044198 322 --SRAHVMVIGATNRP 335 (772)
Q Consensus 322 --~~~~v~vI~atn~~ 335 (772)
...++-+|++|+..
T Consensus 343 ~~~~~dvRiIaat~~~ 358 (526)
T TIGR02329 343 EPVPVDVRVVAATHCA 358 (526)
T ss_pred ceeeecceEEeccCCC
Confidence 12346788888765
No 407
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.34 E-value=9.2e-07 Score=100.39 Aligned_cols=168 Identities=23% Similarity=0.285 Sum_probs=98.5
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhcc-----cccch-------HHHHHHHHHHHhCCCeEEE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMW-----FGESE-------ANVRDVFDKARQSAPCVLF 560 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~-----vg~se-------~~i~~vf~~a~~~~p~ilf 560 (772)
..+++++|++||||+++|+++.... +.+|+.+++..+...+ .|... ......|..| ...+||
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ 238 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLF 238 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeEC---CCCEEE
Confidence 4569999999999999999998775 4689999988753221 11100 0001112222 235999
Q ss_pred EcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC---------CCCcEEEEeecCCC-------CCCCccccCCCCcc
Q 044198 561 FDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS---------AKKTVFVIGATNRP-------DMIDPALLRPGRLD 624 (772)
Q Consensus 561 iDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~---------~~~~v~vi~aTn~~-------~~ld~allrpgRf~ 624 (772)
||||+.|. ..++..|+..++.-. ...++-+|+||+.. ..+.+.|.. |+.
T Consensus 239 l~~i~~l~-------------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~ 303 (445)
T TIGR02915 239 LDEIGDLP-------------LNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA 303 (445)
T ss_pred EechhhCC-------------HHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc
Confidence 99999983 556777888876431 01257788888764 233344433 554
Q ss_pred ccccCCCCCHHHHH----HHHHHhhccC----CCC----CcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 044198 625 QLIYIPLPDEHSRL----QIFKSCLRKS----PVS----KDIDLKAIAKYTHGFSGADITEICQRACKCA 682 (772)
Q Consensus 625 ~~i~~~~p~~~~r~----~Il~~~~~~~----~~~----~~~~~~~la~~~~g~sg~di~~l~~~a~~~a 682 (772)
.+.+..|...+|. .+++.++++. ... .+.-+..|.++.=--+.++|++++..|...+
T Consensus 304 -~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 304 -EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred -cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 3444455545554 3444444332 111 2223444444332235699999999887654
No 408
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.34 E-value=9.7e-07 Score=91.59 Aligned_cols=102 Identities=22% Similarity=0.311 Sum_probs=63.5
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhcccccchH-HHHHHHHH-HHhCCCeEEEEcCchhhhh
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGESEA-NVRDVFDK-ARQSAPCVLFFDELDSIAI 569 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~se~-~i~~vf~~-a~~~~p~ilfiDEid~l~~ 569 (772)
...+++|+||||+|||+||.|+|+++ +..++.+..++++...-..-.. ....-+.+ .. ...+|+|||+-..-
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~--~~dlLIiDDlG~~~- 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK--KVDLLIIDDIGYEP- 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh--cCCEEEEecccCcc-
Confidence 46789999999999999999999887 6778889999988764221111 11111222 22 23599999986642
Q ss_pred ccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCC
Q 044198 570 QRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPD 611 (772)
Q Consensus 570 ~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 611 (772)
. +....+.+++.++........ |.|||.+.
T Consensus 181 -------~---~~~~~~~~~q~I~~r~~~~~~--~~tsN~~~ 210 (254)
T COG1484 181 -------F---SQEEADLLFQLISRRYESRSL--IITSNLSF 210 (254)
T ss_pred -------C---CHHHHHHHHHHHHHHHhhccc--eeecCCCh
Confidence 1 122233344444433333333 89999753
No 409
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.34 E-value=1.4e-06 Score=98.03 Aligned_cols=124 Identities=24% Similarity=0.387 Sum_probs=76.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhh---h-----------c--c--cchHH-HH-------H
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANETGCY--FLCINGPEIMS---K-----------M--A--GESES-NL-------R 272 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l~~~--~~~v~~~~~~~---~-----------~--~--g~~~~-~l-------~ 272 (772)
....+++|+||||||||++++.+++.+... -..+.+..+.+ . + + ..+.. .+ .
T Consensus 208 ~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~p 287 (506)
T PRK09862 208 AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGP 287 (506)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehh
Confidence 345679999999999999999999876421 01111111110 0 0 0 00000 00 1
Q ss_pred HHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc-----------ccCceEEEEeeCCCC-----
Q 044198 273 EAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK-----------SRAHVMVIGATNRPN----- 336 (772)
Q Consensus 273 ~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~-----------~~~~v~vI~atn~~~----- 336 (772)
..+..+. ..+||+||++.+. ..+++.|++.|+.-. ...++.+|+|+|+..
T Consensus 288 G~l~~A~---gGvLfLDEi~e~~-----------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~ 353 (506)
T PRK09862 288 GEISLAH---NGVLFLDELPEFE-----------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQ 353 (506)
T ss_pred hHhhhcc---CCEEecCCchhCC-----------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecC
Confidence 1233332 3599999997653 355677777774322 134689999999862
Q ss_pred ----------------CCChhhhccCCceeEEEeCCCCHH
Q 044198 337 ----------------SIDPALRRSGRFDKEIDIGVPDEV 360 (772)
Q Consensus 337 ----------------~ld~al~r~gRf~~~i~i~~p~~~ 360 (772)
.++.++.. ||+..+.++.|+.+
T Consensus 354 ~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 354 GNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 36667777 99999999998876
No 410
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.33 E-value=4.5e-06 Score=99.64 Aligned_cols=150 Identities=25% Similarity=0.386 Sum_probs=92.7
Q ss_pred CccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh
Q 044198 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSK 262 (772)
Q Consensus 186 ~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~ 262 (772)
..|+++.|.+..++.+.+.+..-- ....+|||+|++|||||++|++|.... +.+++.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 456788898888888876665411 234679999999999999999998865 468999999765321
Q ss_pred -----cccc--------hHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc--------
Q 044198 263 -----MAGE--------SESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK-------- 321 (772)
Q Consensus 263 -----~~g~--------~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~-------- 321 (772)
..|. ..... ..|.. ....+|||||++.+.. .+...|+..++...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~-g~le~---a~~GtL~Ldei~~L~~-----------~~Q~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRI-GRFEL---ADKSSLFLDEVGDMPL-----------ELQPKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred HhhhhhcCcccccccccccchh-hHHHh---cCCCeEEEechhhCCH-----------HHHHHHHHHHHhCCEEeCCCCC
Confidence 1111 11111 12322 2346999999998753 33455666654321
Q ss_pred -ccCceEEEEeeCCCC-------CCChhhhccCCceeEEEeCCCCHHHHHH
Q 044198 322 -SRAHVMVIGATNRPN-------SIDPALRRSGRFDKEIDIGVPDEVGRLE 364 (772)
Q Consensus 322 -~~~~v~vI~atn~~~-------~ld~al~r~gRf~~~i~i~~p~~~~r~~ 364 (772)
...++.+|++|+..- .+.+.+.. |+. .+.+..|...+|.+
T Consensus 507 ~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~ 554 (686)
T PRK15429 507 IIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPE 554 (686)
T ss_pred cccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHh
Confidence 124678888887651 22222222 332 35667777776654
No 411
>PRK06526 transposase; Provisional
Probab=98.33 E-value=1.2e-06 Score=90.94 Aligned_cols=101 Identities=23% Similarity=0.400 Sum_probs=60.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcccc-hHHHHHHHHHHHHHcCCceEEeccccccccC
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKMAGE-SESNLREAFNVAEKNAPSIIFIDEIDSIAPK 297 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~~g~-~~~~l~~~f~~a~~~~p~il~iDEid~l~~~ 297 (772)
.+.+++|+||||||||+|+.+++.++ +..+..++..+++...... ....+...+... ..+.+|+|||++.+...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~ 174 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFE 174 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCC
Confidence 35789999999999999999998875 5556666666655433111 011122222222 34579999999876422
Q ss_pred CCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCC
Q 044198 298 REKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP 335 (772)
Q Consensus 298 ~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~ 335 (772)
......|..+++....+. .+|.+||.+
T Consensus 175 ---------~~~~~~L~~li~~r~~~~--s~IitSn~~ 201 (254)
T PRK06526 175 ---------PEAANLFFQLVSSRYERA--SLIVTSNKP 201 (254)
T ss_pred ---------HHHHHHHHHHHHHHHhcC--CEEEEcCCC
Confidence 122244556665433333 255577765
No 412
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.33 E-value=1.2e-06 Score=89.89 Aligned_cols=162 Identities=22% Similarity=0.340 Sum_probs=90.8
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhCCc---EEEEeccc-c---------------------hhc-c------------
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQAN---FISIKGPE-L---------------------LTM-W------------ 536 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~~~---~i~v~~~~-l---------------------~~~-~------------ 536 (772)
+...++++||.|+|||+|++.+....... .+.+...+ . +.. .
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDL 98 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcc
Confidence 35679999999999999999999888321 11111100 0 000 0
Q ss_pred cccchHHHHHHHHHHHhCC-CeEEEEcCchhhh-hccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCC---
Q 044198 537 FGESEANVRDVFDKARQSA-PCVLFFDELDSIA-IQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPD--- 611 (772)
Q Consensus 537 vg~se~~i~~vf~~a~~~~-p~ilfiDEid~l~-~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~--- 611 (772)
.......+..+++...+.. ..||+|||++.+. ... ....++..|.+.++......++.+|.++....
T Consensus 99 ~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~ 170 (234)
T PF01637_consen 99 SEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE--------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLME 170 (234)
T ss_dssp -GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT--------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc--------chHHHHHHHHHHHhhccccCCceEEEECCchHHHH
Confidence 0112445666666665543 3899999999997 221 13567778888887754444544444443321
Q ss_pred ---CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCC-C-CCcccHHHHHHHcCCCC
Q 044198 612 ---MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSP-V-SKDIDLKAIAKYTHGFS 667 (772)
Q Consensus 612 ---~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~-~-~~~~~~~~la~~~~g~s 667 (772)
.-+..+. +|+.. +++++.+.++..++++..+++.. + .++.+++.+...+.|..
T Consensus 171 ~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 171 EFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp HTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-H
T ss_pred HhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCH
Confidence 1123344 38887 99999999999999999876651 1 25667888888887754
No 413
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.33 E-value=9.6e-07 Score=83.04 Aligned_cols=106 Identities=28% Similarity=0.513 Sum_probs=64.4
Q ss_pred CcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC---eEEEEechhhhhhcccchHH
Q 044198 193 GVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGC---YFLCINGPEIMSKMAGESES 269 (772)
Q Consensus 193 G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~---~~~~v~~~~~~~~~~g~~~~ 269 (772)
|-...++++++.+..-. ....+|+|+|++||||+++|++|....+. +++.++|....
T Consensus 2 G~S~~~~~l~~~l~~~a-----------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLA-----------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp -SCHHHHHHHHHHHHHH-----------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCHHHHHHHHHHHHHh-----------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 44455666665554311 23567999999999999999999987643 45556655432
Q ss_pred HHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCC
Q 044198 270 NLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP 335 (772)
Q Consensus 270 ~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~ 335 (772)
...++.+ ....|||+|+|.+.+ .....|...+.... +.++.+|+++..+
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~-----------~~Q~~L~~~l~~~~-~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSP-----------EAQRRLLDLLKRQE-RSNVRLIASSSQD 110 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-H-----------HHHHHHHHHHHHCT-TTTSEEEEEECC-
T ss_pred --HHHHHHc---CCCEEEECChHHCCH-----------HHHHHHHHHHHhcC-CCCeEEEEEeCCC
Confidence 2344443 556999999998853 22344555555432 4455666666543
No 414
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.33 E-value=2.4e-06 Score=79.25 Aligned_cols=97 Identities=22% Similarity=0.420 Sum_probs=59.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh--------CCeEEEEechhhhh----------h----ccc--chHHHHHHHHHHH
Q 044198 223 PKGILLHGPPGTGKTLLARAIANET--------GCYFLCINGPEIMS----------K----MAG--ESESNLREAFNVA 278 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l--------~~~~~~v~~~~~~~----------~----~~g--~~~~~l~~~f~~a 278 (772)
.+.++|+||||+|||++++.++..+ ..+++.++++.... . ... ........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4569999999999999999999987 66778887754321 0 001 1233334444455
Q ss_pred HHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEe
Q 044198 279 EKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGA 331 (772)
Q Consensus 279 ~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~a 331 (772)
......+|+|||+|.+. + ....+.|..+++ .....++++|+
T Consensus 84 ~~~~~~~lviDe~~~l~-~---------~~~l~~l~~l~~--~~~~~vvl~G~ 124 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S---------DEFLEFLRSLLN--ESNIKVVLVGT 124 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T---------HHHHHHHHHHTC--SCBEEEEEEES
T ss_pred HhcCCeEEEEeChHhcC-C---------HHHHHHHHHHHh--CCCCeEEEEEC
Confidence 55555599999999874 1 345666777666 22334444443
No 415
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.33 E-value=5.1e-06 Score=95.52 Aligned_cols=150 Identities=25% Similarity=0.368 Sum_probs=92.9
Q ss_pred ccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc
Q 044198 187 GYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKM 263 (772)
Q Consensus 187 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~ 263 (772)
.+.++.|.+..++++.+.+..-- ....+|||+|++||||+++|++|.... +.+|+.+||..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a-----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA-----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 56678899998888887776511 235679999999999999999999875 4689999997653211
Q ss_pred -----ccchHH-------HHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc---------c
Q 044198 264 -----AGESES-------NLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK---------S 322 (772)
Q Consensus 264 -----~g~~~~-------~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~---------~ 322 (772)
.|.... .-...|..+ ....|||||++.+.+ .+...|+..++... .
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPL-----------ALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCH-----------HHHHHHHHHHhcCCEeeCCCCcce
Confidence 110000 000123222 345899999998853 23355555554321 1
Q ss_pred cCceEEEEeeCCC-------CCCChhhhccCCceeEEEeCCCCHHHHHH
Q 044198 323 RAHVMVIGATNRP-------NSIDPALRRSGRFDKEIDIGVPDEVGRLE 364 (772)
Q Consensus 323 ~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~i~~p~~~~r~~ 364 (772)
..++-+|++|+.. ..+.+.|.. |+. .+.+.+|...+|.+
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~e 365 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGD 365 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchh
Confidence 2467888888765 123333332 332 25566676666643
No 416
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.32 E-value=8.3e-06 Score=92.62 Aligned_cols=174 Identities=20% Similarity=0.246 Sum_probs=99.7
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch-------hcccccchH-----HHHHHHH-----HHHh----
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL-------TMWFGESEA-----NVRDVFD-----KARQ---- 553 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~-------~~~vg~se~-----~i~~vf~-----~a~~---- 553 (772)
+.+-+||+||||||||++++++|++++..+.....+-.. ..|.+.... .-...|. .++.
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~ 123 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLS 123 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhcccccccccccccc
Confidence 344588999999999999999999999888776433221 111111110 0011222 1111
Q ss_pred -------CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeec-------CCC--------C
Q 044198 554 -------SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGAT-------NRP--------D 611 (772)
Q Consensus 554 -------~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT-------n~~--------~ 611 (772)
..+.||++||+-.+... + ..++.+.|.+.+..-... .+++|.+- |.. .
T Consensus 124 ~~g~~~~~~~kvILVEDlPN~~~~--------~-~~~f~~~L~~~l~~~~~~-PlV~iiSe~~~~~~~~~~~~~~~t~~~ 193 (519)
T PF03215_consen 124 MSGSNSSSNKKVILVEDLPNVFHR--------D-TSRFREALRQYLRSSRCL-PLVFIISETESLSGDNSYRSNSFTAER 193 (519)
T ss_pred ccCCCcCCCceEEEeeccccccch--------h-HHHHHHHHHHHHHcCCCC-CEEEEEecccccCCCCcccccchhhhh
Confidence 24679999998654311 1 355555566666532221 56666661 111 1
Q ss_pred CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccC--------CCCCccc-HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 044198 612 MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKS--------PVSKDID-LKAIAKYTHGFSGADITEICQRACKCA 682 (772)
Q Consensus 612 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~--------~~~~~~~-~~~la~~~~g~sg~di~~l~~~a~~~a 682 (772)
.+.+.++.-.++. +|.|.+-.....++-|+..+... ......+ ++.|++.+ .+||+.++..-...+
T Consensus 194 L~~~~il~~~~i~-~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s----~GDIRsAIn~LQf~~ 268 (519)
T PF03215_consen 194 LFPKEILNHPGIT-RIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESS----NGDIRSAINNLQFWC 268 (519)
T ss_pred ccCHHHHhCCCce-EEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhc----CchHHHHHHHHHHHh
Confidence 4555555422443 78888777766666665555332 1122223 66777654 459999998888887
Q ss_pred H
Q 044198 683 I 683 (772)
Q Consensus 683 ~ 683 (772)
.
T Consensus 269 ~ 269 (519)
T PF03215_consen 269 L 269 (519)
T ss_pred c
Confidence 7
No 417
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.32 E-value=5.7e-07 Score=94.31 Aligned_cols=136 Identities=24% Similarity=0.376 Sum_probs=77.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCe---EEEEechhhhhhcccchHHHHHHHHHHH-----------HHcCCceEE
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETGCY---FLCINGPEIMSKMAGESESNLREAFNVA-----------EKNAPSIIF 287 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~~~---~~~v~~~~~~~~~~g~~~~~l~~~f~~a-----------~~~~p~il~ 287 (772)
..+++||+||+|||||++++.+-..+... ...++.+.. .....++.+++.. ..+...|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 46789999999999999999877665432 223443221 1122232222211 112346999
Q ss_pred eccccccccCCCCCchhhHHHHHHHHHHHhh--ccc--------ccCceEEEEeeCCC---CCCChhhhccCCceeEEEe
Q 044198 288 IDEIDSIAPKREKTHGEVEKRIVSQLLTLMD--GMK--------SRAHVMVIGATNRP---NSIDPALRRSGRFDKEIDI 354 (772)
Q Consensus 288 iDEid~l~~~~~~~~~~~~~~v~~~L~~lld--~~~--------~~~~v~vI~atn~~---~~ld~al~r~gRf~~~i~i 354 (772)
|||++...++..+.. ..++-|..+++ |+. .-.++.++|++++. ..+++.+.| .| ..+.+
T Consensus 106 iDDlN~p~~d~ygtq-----~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~ 177 (272)
T PF12775_consen 106 IDDLNMPQPDKYGTQ-----PPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNI 177 (272)
T ss_dssp EETTT-S---TTS-------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE-
T ss_pred ecccCCCCCCCCCCc-----CHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEe
Confidence 999997665543222 22344444443 221 22468899999975 357888886 45 46899
Q ss_pred CCCCHHHHHHHHHHHhc
Q 044198 355 GVPDEVGRLEVLRIHTK 371 (772)
Q Consensus 355 ~~p~~~~r~~Il~~~~~ 371 (772)
+.|+.+....|+...+.
T Consensus 178 ~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 178 PYPSDESLNTIFSSILQ 194 (272)
T ss_dssp ---TCCHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHh
Confidence 99999999988876654
No 418
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.31 E-value=1.3e-06 Score=85.80 Aligned_cols=102 Identities=26% Similarity=0.434 Sum_probs=61.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcccc-hHHHHHHHHHHHHHcCCceEEecccccccc
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKMAGE-SESNLREAFNVAEKNAPSIIFIDEIDSIAP 296 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~~g~-~~~~l~~~f~~a~~~~p~il~iDEid~l~~ 296 (772)
....+++|+||||||||+||.+++.++ +..+.+++.++++...... ........++... ...+|+|||+....
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~- 121 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEP- 121 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS--
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceee-
Confidence 346789999999999999999999875 7778888888887543221 1112233344433 34699999995321
Q ss_pred CCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCC
Q 044198 297 KREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP 335 (772)
Q Consensus 297 ~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~ 335 (772)
......+.|..+++....+. ..|.|||..
T Consensus 122 --------~~~~~~~~l~~ii~~R~~~~--~tIiTSN~~ 150 (178)
T PF01695_consen 122 --------LSEWEAELLFEIIDERYERK--PTIITSNLS 150 (178)
T ss_dssp ----------HHHHHCTHHHHHHHHHT---EEEEEESS-
T ss_pred --------ecccccccchhhhhHhhccc--CeEeeCCCc
Confidence 11223455666776655443 344488864
No 419
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.30 E-value=3.9e-06 Score=87.09 Aligned_cols=102 Identities=28% Similarity=0.410 Sum_probs=62.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcccchHH-HHHHHHHHHHHcCCceEEeccccccccC
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKMAGESES-NLREAFNVAEKNAPSIIFIDEIDSIAPK 297 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~~g~~~~-~l~~~f~~a~~~~p~il~iDEid~l~~~ 297 (772)
.+.+++|+||||+|||+||-+++.++ |..++.++.++++......... ....-+... -....+|+|||+......
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~~~~ 182 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYEPFS 182 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCccCC
Confidence 46789999999999999999999887 6778889988887653321111 111111111 123459999999654321
Q ss_pred CCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCC
Q 044198 298 REKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP 335 (772)
Q Consensus 298 ~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~ 335 (772)
. ...+.+..++.....+... +.|+|.+
T Consensus 183 ------~---~~~~~~~q~I~~r~~~~~~--~~tsN~~ 209 (254)
T COG1484 183 ------Q---EEADLLFQLISRRYESRSL--IITSNLS 209 (254)
T ss_pred ------H---HHHHHHHHHHHHHHhhccc--eeecCCC
Confidence 1 1123334444443333333 6678765
No 420
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.30 E-value=2.8e-06 Score=98.47 Aligned_cols=123 Identities=26% Similarity=0.393 Sum_probs=81.5
Q ss_pred CCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh
Q 044198 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMS 261 (772)
Q Consensus 185 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~ 261 (772)
...++++.|.+..++++.+.+.... ....+|||+|++|||||++|++|.... +.+|+.+||..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 3567889999999988887776421 235679999999999999999999875 46899999976532
Q ss_pred hcccchHHHHHHHHHH---------------HHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc-----
Q 044198 262 KMAGESESNLREAFNV---------------AEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK----- 321 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~---------------a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~----- 321 (772)
... + ..+|.. .......+|||||++.+.+ .+...|+..++...
T Consensus 261 ~~~---~---~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~-----------~~Q~~Ll~~l~~~~~~~~~ 323 (534)
T TIGR01817 261 TLL---E---SELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP-----------AFQAKLLRVLQEGEFERVG 323 (534)
T ss_pred HHH---H---HHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH-----------HHHHHHHHHHhcCcEEECC
Confidence 110 0 111110 1112346899999998853 23355666664321
Q ss_pred ----ccCceEEEEeeCCC
Q 044198 322 ----SRAHVMVIGATNRP 335 (772)
Q Consensus 322 ----~~~~v~vI~atn~~ 335 (772)
...++.+|++|+..
T Consensus 324 ~~~~~~~~~riI~~s~~~ 341 (534)
T TIGR01817 324 GNRTLKVDVRLVAATNRD 341 (534)
T ss_pred CCceEeecEEEEEeCCCC
Confidence 11357888888754
No 421
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.30 E-value=8.7e-06 Score=96.52 Aligned_cols=151 Identities=23% Similarity=0.351 Sum_probs=90.6
Q ss_pred CCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CeEEEEechhhhh
Q 044198 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG---CYFLCINGPEIMS 261 (772)
Q Consensus 185 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~---~~~~~v~~~~~~~ 261 (772)
..+|+++.|.+..++++.+.+.... ....+|||+|++||||+++|++|..... .+|+.+||..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 3467888888888887766655311 2345799999999999999999998753 6899999976532
Q ss_pred -----hcccch----HHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc---------cc
Q 044198 262 -----KMAGES----ESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK---------SR 323 (772)
Q Consensus 262 -----~~~g~~----~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~---------~~ 323 (772)
...|.. .......|+. .....||||||+.+.. .+...|+..++.-. ..
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~-----------~~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSP-----------ELQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCH-----------HHHHHHHHHHhcCcEEeCCCCceEE
Confidence 111110 0000001221 2346899999998753 23355555554321 01
Q ss_pred CceEEEEeeCCCCCCChhhhccCCce-------eEEEeCCCCHHHHH
Q 044198 324 AHVMVIGATNRPNSIDPALRRSGRFD-------KEIDIGVPDEVGRL 363 (772)
Q Consensus 324 ~~v~vI~atn~~~~ld~al~r~gRf~-------~~i~i~~p~~~~r~ 363 (772)
.++.+|++|+.. +. .+...|+|. ..+.+.+|...+|.
T Consensus 456 ~~~riI~~t~~~--l~-~~~~~~~f~~dL~~~l~~~~i~lPpLreR~ 499 (638)
T PRK11388 456 VDVRVIATTTAD--LA-MLVEQNRFSRQLYYALHAFEITIPPLRMRR 499 (638)
T ss_pred eeEEEEEeccCC--HH-HHHhcCCChHHHhhhhceeEEeCCChhhhh
Confidence 257788888864 21 122223442 13566667766664
No 422
>PRK06921 hypothetical protein; Provisional
Probab=98.30 E-value=9.7e-07 Score=92.30 Aligned_cols=69 Identities=25% Similarity=0.269 Sum_probs=46.0
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHh----CCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchh
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANEC----QANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDS 566 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~----~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~ 566 (772)
...+++|+||||+|||+|+.++|+++ +..++.+...+++...... .......++... ...+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~~--~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRMK--KVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHhc--CCCEEEEecccc
Confidence 35679999999999999999999875 4566777777765432111 111122223322 346999999944
No 423
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.30 E-value=3.3e-06 Score=78.32 Aligned_cols=99 Identities=23% Similarity=0.379 Sum_probs=60.1
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh--------CCcEEEEecccchhc--c------------cc-cchH-HHHHHHHHH
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC--------QANFISIKGPELLTM--W------------FG-ESEA-NVRDVFDKA 551 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~--------~~~~i~v~~~~l~~~--~------------vg-~se~-~i~~vf~~a 551 (772)
.+.++++||||+|||++++.++... +.+++.++.+...+. + .+ .+.. ....+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4568999999999999999999887 677777766543311 0 01 1222 233344444
Q ss_pred HhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecC
Q 044198 552 RQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATN 608 (772)
Q Consensus 552 ~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn 608 (772)
......+|+|||+|.+. . ..+++.|...++ ...-.++++++.+
T Consensus 84 ~~~~~~~lviDe~~~l~-~-----------~~~l~~l~~l~~--~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S-----------DEFLEFLRSLLN--ESNIKVVLVGTPE 126 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T-----------HHHHHHHHHHTC--SCBEEEEEEESST
T ss_pred HhcCCeEEEEeChHhcC-C-----------HHHHHHHHHHHh--CCCCeEEEEEChh
Confidence 44444599999999984 1 456677766666 3333455555543
No 424
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.29 E-value=5.7e-06 Score=79.95 Aligned_cols=132 Identities=26% Similarity=0.421 Sum_probs=83.8
Q ss_pred CcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe----------------------
Q 044198 193 GVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY---------------------- 250 (772)
Q Consensus 193 G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~---------------------- 250 (772)
|.++.++.|...+..- ..+..+||+||+|+||+++|+++|+.+-..
T Consensus 1 gq~~~~~~L~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 6677777777777541 335679999999999999999999876221
Q ss_pred -EEEEechhhhhhcccchHHHHHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCc
Q 044198 251 -FLCINGPEIMSKMAGESESNLREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAH 325 (772)
Q Consensus 251 -~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~ 325 (772)
++.++..... ..-....++.+...... ...-|++|||+|.+.. ...+.|+..|+... .+
T Consensus 69 d~~~~~~~~~~---~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~-----------~a~NaLLK~LEepp--~~ 132 (162)
T PF13177_consen 69 DFIIIKPDKKK---KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE-----------EAQNALLKTLEEPP--EN 132 (162)
T ss_dssp TEEEEETTTSS---SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H-----------HHHHHHHHHHHSTT--TT
T ss_pred ceEEEeccccc---chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH-----------HHHHHHHHHhcCCC--CC
Confidence 2222221100 01123455555544322 3356999999998753 44688899888753 46
Q ss_pred eEEEEeeCCCCCCChhhhccCCceeEEEeC
Q 044198 326 VMVIGATNRPNSIDPALRRSGRFDKEIDIG 355 (772)
Q Consensus 326 v~vI~atn~~~~ld~al~r~gRf~~~i~i~ 355 (772)
+.+|.+|+.++.|-|.+++ |... +.++
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc~~-i~~~ 159 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RCQV-IRFR 159 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TSEE-EEE-
T ss_pred EEEEEEECChHHChHHHHh--hceE-EecC
Confidence 8888899999999999998 7643 4444
No 425
>PRK06921 hypothetical protein; Provisional
Probab=98.29 E-value=3.1e-06 Score=88.54 Aligned_cols=105 Identities=22% Similarity=0.261 Sum_probs=59.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh----CCeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccc-c
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANET----GCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIA-P 296 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l----~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~-~ 296 (772)
...+++|+||||+|||+|+.++|+++ +..++++...+++....... ......++.. ....+|+|||++.-. .
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~~~~g 192 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFKPVNG 192 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEeccccccCC
Confidence 35789999999999999999999976 45667777666544321111 1111222222 345699999995411 1
Q ss_pred CCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCC
Q 044198 297 KREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP 335 (772)
Q Consensus 297 ~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~ 335 (772)
.. ... ......|..+++....+..-+ |.|+|.+
T Consensus 193 ~e--~~t---~~~~~~lf~iin~R~~~~k~t-Iitsn~~ 225 (266)
T PRK06921 193 KP--RAT---EWQIEQMYSVLNYRYLNHKPI-LISSELT 225 (266)
T ss_pred Cc--cCC---HHHHHHHHHHHHHHHHCCCCE-EEECCCC
Confidence 11 011 122345666666554332333 4466653
No 426
>PRK12377 putative replication protein; Provisional
Probab=98.29 E-value=6.9e-06 Score=84.61 Aligned_cols=101 Identities=23% Similarity=0.280 Sum_probs=62.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcccchH--HHHHHHHHHHHHcCCceEEeccccccccC
Q 044198 223 PKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKMAGESE--SNLREAFNVAEKNAPSIIFIDEIDSIAPK 297 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~~g~~~--~~l~~~f~~a~~~~p~il~iDEid~l~~~ 297 (772)
..+++|+||||||||+||.++++.+ +..++.++.+++......... .....+++.. ....+|+|||+.....+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s 178 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRET 178 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC
Confidence 4689999999999999999999987 566777877777653321110 0112233332 34569999999654321
Q ss_pred CCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCC
Q 044198 298 REKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP 335 (772)
Q Consensus 298 ~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~ 335 (772)
+ .-...|..+++..... ....|.|||..
T Consensus 179 ------~---~~~~~l~~ii~~R~~~-~~ptiitSNl~ 206 (248)
T PRK12377 179 ------K---NEQVVLNQIIDRRTAS-MRSVGMLTNLN 206 (248)
T ss_pred ------H---HHHHHHHHHHHHHHhc-CCCEEEEcCCC
Confidence 1 1235666777664432 22334467754
No 427
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.28 E-value=2.2e-05 Score=88.67 Aligned_cols=170 Identities=23% Similarity=0.349 Sum_probs=105.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhC----------CeEEEEechhhhh----------hcccchH------HHHHHHHHHH
Q 044198 225 GILLHGPPGTGKTLLARAIANETG----------CYFLCINGPEIMS----------KMAGESE------SNLREAFNVA 278 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~----------~~~~~v~~~~~~~----------~~~g~~~------~~l~~~f~~a 278 (772)
.+.+.|-||||||..++.+.+.+. ..++.+||..+.+ .+.|+.. ..+..-|..+
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 489999999999999999988652 3578888865532 1222211 1122223211
Q ss_pred H-HcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc-ccCceEEEEeeCCCCCC----ChhhhccCCce-eE
Q 044198 279 E-KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK-SRAHVMVIGATNRPNSI----DPALRRSGRFD-KE 351 (772)
Q Consensus 279 ~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~-~~~~v~vI~atn~~~~l----d~al~r~gRf~-~~ 351 (772)
. ...++|++|||+|.|+...+ ..|.+++|... ....++||+..|..+.. .....+ |++ ..
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~Q-----------dVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~tR 570 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRSQ-----------DVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSS--RLGLTR 570 (767)
T ss_pred CCCCCCEEEEeccHHHHhcccH-----------HHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhh--hcccee
Confidence 1 23478999999999986432 55777777543 34568888888776432 222222 443 34
Q ss_pred EEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhh--HHHHHHHHHHHh
Q 044198 352 IDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGAD--LAALCTEGAMQC 407 (772)
Q Consensus 352 i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~d--l~~l~~~a~~~~ 407 (772)
+.|.+++..+..+|+...+.+...-...-++-+|+.....+|.- ...+|++|+.-+
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia 628 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIA 628 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 89999999999999998887764333333444555444444422 234466655433
No 428
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.28 E-value=6.9e-06 Score=97.81 Aligned_cols=131 Identities=12% Similarity=0.024 Sum_probs=82.3
Q ss_pred CCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcccccchHHHHHHHHHH-HhCCCeEEEEcCchhhhhcc
Q 044198 493 MSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA-RQSAPCVLFFDELDSIAIQR 571 (772)
Q Consensus 493 ~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a-~~~~p~ilfiDEid~l~~~r 571 (772)
.....+.++.|..|+||+.+.+.+|+..+.+.+.+.+..-. ..|+-+..+....-++ -.....++||||--.+
T Consensus 1833 ~~vggh~~l~g~~~~g~~~~~efvcwlN~~~m~e~~~hr~~--~~~Df~d~lk~~~~~~~~~~~r~Cl~I~Esi~~---- 1906 (3164)
T COG5245 1833 LVVGGHGVLKGVLIRGACDAREFVCWLNPRNMREIFGHRDE--LTGDFRDSLKVQDLRRNIHGGRECLFIFESIPV---- 1906 (3164)
T ss_pred HHhccchhhhhhhhhhhHHHHHHHHHhCccchhhhhccccc--chhhHHHHHHHHHHhccccCCceEEEEecCCcc----
Confidence 34567789999999999999999999888888777665421 2334344443333222 2233467888873221
Q ss_pred CCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhh
Q 044198 572 GSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCL 645 (772)
Q Consensus 572 ~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~ 645 (772)
...+|..|+.+-.+.++.-+...|....|..-+.. ..+......-++++..++|-.+.
T Consensus 1907 -------------es~fLe~~N~LL~n~~~~~lf~gne~~~I~~nlr~---~~es~~L~~dTe~tlt~vFl~~~ 1964 (3164)
T COG5245 1907 -------------ESSFLEDFNPLLDNNRFLCLFSGNERIRIPENLRF---VFESTSLEKDTEATLTRVFLVYM 1964 (3164)
T ss_pred -------------chHHHHHhhhhhhccccchhccchhHHHHHHHHHh---hhhccccccCCHHHHHHHHHHHH
Confidence 23366677666666777777777776666665532 12233344457777888887655
No 429
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.27 E-value=5.4e-06 Score=89.06 Aligned_cols=101 Identities=24% Similarity=0.359 Sum_probs=63.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcccc---hHHHHHHHHHHHHHcCCceEEecccccccc
Q 044198 223 PKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKMAGE---SESNLREAFNVAEKNAPSIIFIDEIDSIAP 296 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~~g~---~~~~l~~~f~~a~~~~p~il~iDEid~l~~ 296 (772)
..+++|+||+|||||+|+.++|+++ +..+++++..++....... ........++... ...+|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCCC
Confidence 4789999999999999999999987 6678888888876543211 0111111233322 346999999965432
Q ss_pred CCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCC
Q 044198 297 KREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP 335 (772)
Q Consensus 297 ~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~ 335 (772)
+ ....+.|..+++.......- +|.|||.+
T Consensus 261 t---------~~~~~~Lf~iin~R~~~~k~-tIiTSNl~ 289 (329)
T PRK06835 261 T---------EFSKSELFNLINKRLLRQKK-MIISTNLS 289 (329)
T ss_pred C---------HHHHHHHHHHHHHHHHCCCC-EEEECCCC
Confidence 1 22346677777765443333 34466643
No 430
>PRK15115 response regulator GlrR; Provisional
Probab=98.26 E-value=5.3e-06 Score=94.16 Aligned_cols=167 Identities=23% Similarity=0.358 Sum_probs=97.6
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhccc-----ccch-------HHHHHHHHHHHhCCCeEEE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWF-----GESE-------ANVRDVFDKARQSAPCVLF 560 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~v-----g~se-------~~i~~vf~~a~~~~p~ilf 560 (772)
...++++|++|||||++|+++.... +.+|+.+++..+-.... |... .....+|..| ....||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ 233 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA---EGGTLF 233 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEEC---CCCEEE
Confidence 3459999999999999999998875 47899999887532211 1100 0001122222 235999
Q ss_pred EcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-----C----CCcEEEEeecCCCCCCCccccCCCCcc-------
Q 044198 561 FDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-----A----KKTVFVIGATNRPDMIDPALLRPGRLD------- 624 (772)
Q Consensus 561 iDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-----~----~~~v~vi~aTn~~~~ld~allrpgRf~------- 624 (772)
|||||.|. ......|+..|+... . ..++.+|+||+.+ ++..+.+ |+|.
T Consensus 234 l~~i~~l~-------------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~-~~f~~~l~~~l 297 (444)
T PRK15115 234 LDEIGDMP-------------APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMAR-GEFREDLYYRL 297 (444)
T ss_pred EEccccCC-------------HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHc-CCccHHHHHhh
Confidence 99999983 445677888876432 1 1267888999863 3333333 4552
Q ss_pred ccccCCCCCHHHHH----HHHHHhhccC----C--C--CCcccHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 044198 625 QLIYIPLPDEHSRL----QIFKSCLRKS----P--V--SKDIDLKAIAKYTHGFSGADITEICQRACKC 681 (772)
Q Consensus 625 ~~i~~~~p~~~~r~----~Il~~~~~~~----~--~--~~~~~~~~la~~~~g~sg~di~~l~~~a~~~ 681 (772)
..+.+..|...+|. .+++.++++. . . -++.-+..|..+.=--+.++++++++.|...
T Consensus 298 ~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred ceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 13444555555553 2444444332 1 1 1233345555544223568888888887654
No 431
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.25 E-value=1.5e-06 Score=94.41 Aligned_cols=139 Identities=27% Similarity=0.389 Sum_probs=88.6
Q ss_pred CCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh
Q 044198 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMS 261 (772)
Q Consensus 185 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~ 261 (772)
.....+|.|....+.++.+.++.-- .....|||+|++||||-.+||+|.... ..+|+.+||..+..
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA-----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVA-----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHh-----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 3466689999999999888877521 234579999999999999999999876 46899999976532
Q ss_pred hcc-cchHHHHHHHHHHHHHc--------CCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcc---------ccc
Q 044198 262 KMA-GESESNLREAFNVAEKN--------APSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGM---------KSR 323 (772)
Q Consensus 262 ~~~-g~~~~~l~~~f~~a~~~--------~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~---------~~~ 323 (772)
... .+.-...+..|.-|... ....||+|||..+.. .+...|+..+... ..+
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL-----------~lQaKLLRvLQegEieRvG~~r~ik 356 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPL-----------ALQAKLLRVLQEGEIERVGGDRTIK 356 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCH-----------HHHHHHHHHHhhcceeecCCCceeE
Confidence 210 00111122233322221 134899999976643 3445555555321 123
Q ss_pred CceEEEEeeCCCCCCChhhhccCCc
Q 044198 324 AHVMVIGATNRPNSIDPALRRSGRF 348 (772)
Q Consensus 324 ~~v~vI~atn~~~~ld~al~r~gRf 348 (772)
..|-+|+|||+. |..+.+. |+|
T Consensus 357 VDVRiIAATNRD--L~~~V~~-G~F 378 (550)
T COG3604 357 VDVRVIAATNRD--LEEMVRD-GEF 378 (550)
T ss_pred EEEEEEeccchh--HHHHHHc-Ccc
Confidence 579999999975 4444432 455
No 432
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=8.6e-06 Score=87.08 Aligned_cols=127 Identities=18% Similarity=0.310 Sum_probs=88.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCe------------------------EEEEechhhhhhcccchHHHHHHHHHHH
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCY------------------------FLCINGPEIMSKMAGESESNLREAFNVA 278 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~------------------------~~~v~~~~~~~~~~g~~~~~l~~~f~~a 278 (772)
++.+||+||+|+||+++|+++|+.+-+. ++.+...+ ++ .-....++.+.+.+
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~--~I~id~iR~l~~~~ 99 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NK--DIGVDQVREINEKV 99 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CC--CCCHHHHHHHHHHH
Confidence 5679999999999999999999877331 11121100 01 11234555554433
Q ss_pred H----HcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEe
Q 044198 279 E----KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDI 354 (772)
Q Consensus 279 ~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i 354 (772)
. ....-|++||++|.+.. ...+.|+..++. ...++++|.+|+.++.+-|.+++ |... +.|
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m~~-----------~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC~~-~~~ 163 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERLTE-----------AAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RCQT-WLI 163 (325)
T ss_pred hhccccCCceEEEEechhhhCH-----------HHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hceE-EeC
Confidence 2 23445999999998753 345788888887 34567888899999999999998 7654 789
Q ss_pred CCCCHHHHHHHHHHH
Q 044198 355 GVPDEVGRLEVLRIH 369 (772)
Q Consensus 355 ~~p~~~~r~~Il~~~ 369 (772)
++|+.++-.+.|...
T Consensus 164 ~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 164 HPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999998888777654
No 433
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.22 E-value=1.8e-05 Score=80.80 Aligned_cols=128 Identities=23% Similarity=0.325 Sum_probs=77.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCC
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKT 301 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~ 301 (772)
...+-.++||+|||||..++.+|..+|.+++.+||.+..+ ...+..+|.-+... .+++++||++.+-.
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~~----- 98 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLSE----- 98 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSH-----
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-CchhhhhhhhhhhH-----
Confidence 3567789999999999999999999999999999976543 35566777655443 57999999998742
Q ss_pred chhhHHHHHHHHHHHhhcccc--------------cCceEEEEeeCCC----CCCChhhhccCCceeEEEeCCCCHHHHH
Q 044198 302 HGEVEKRIVSQLLTLMDGMKS--------------RAHVMVIGATNRP----NSIDPALRRSGRFDKEIDIGVPDEVGRL 363 (772)
Q Consensus 302 ~~~~~~~v~~~L~~lld~~~~--------------~~~v~vI~atn~~----~~ld~al~r~gRf~~~i~i~~p~~~~r~ 363 (772)
+.-..+..++..+.+.++. ..+..++.|+|+. ..|++.++. +-+.+.+..||...-.
T Consensus 99 --~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~~I~ 173 (231)
T PF12774_consen 99 --EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLSLIA 173 (231)
T ss_dssp --HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HHHHH
T ss_pred --HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHHHHH
Confidence 2222333333333332221 1245677788855 578888874 5677889899887665
Q ss_pred HHH
Q 044198 364 EVL 366 (772)
Q Consensus 364 ~Il 366 (772)
+++
T Consensus 174 ei~ 176 (231)
T PF12774_consen 174 EIL 176 (231)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 434
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.22 E-value=7.2e-07 Score=83.89 Aligned_cols=86 Identities=27% Similarity=0.457 Sum_probs=57.7
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCC---cEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccC
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQA---NFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRG 572 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~---~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~ 572 (772)
...++|+|++||||+++|+++...... +|+.+++.++- .++++.+ ....+||+|+|.+-
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~---- 82 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS---- 82 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-----
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC----
Confidence 456999999999999999999987753 55555555421 4466665 34599999999993
Q ss_pred CCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCC
Q 044198 573 SSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNR 609 (772)
Q Consensus 573 ~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~ 609 (772)
......|+..|+... ..++-+|+++..
T Consensus 83 ---------~~~Q~~L~~~l~~~~-~~~~RlI~ss~~ 109 (138)
T PF14532_consen 83 ---------PEAQRRLLDLLKRQE-RSNVRLIASSSQ 109 (138)
T ss_dssp ---------HHHHHHHHHHHHHCT-TTTSEEEEEECC
T ss_pred ---------HHHHHHHHHHHHhcC-CCCeEEEEEeCC
Confidence 455666777776543 334455555543
No 435
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=6.7e-06 Score=86.01 Aligned_cols=120 Identities=15% Similarity=0.179 Sum_probs=82.0
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhCCcE--------EEEecccchhcc-ccc----chHHHHHHHHHHHh----CCCe
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQANF--------ISIKGPELLTMW-FGE----SEANVRDVFDKARQ----SAPC 557 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~~~~--------i~v~~~~l~~~~-vg~----se~~i~~vf~~a~~----~~p~ 557 (772)
-+..+||+||+|+||+.+|.++|..+-+.- -.-..||+.--. .|. +-..+|++-+.+.. +...
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 356799999999999999999998763310 011122221000 011 23345665555433 3447
Q ss_pred EEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCC
Q 044198 558 VLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLP 632 (772)
Q Consensus 558 ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p 632 (772)
|++||++|.+ +....|.||..|+. +..++++|..|+.++.|-|.+++ |+. .+.|+++
T Consensus 98 v~ii~~ad~m-------------t~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 98 IYIIHEADRM-------------TLDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred EEEEechhhc-------------CHHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 9999999999 45678999999995 55678888888889999998887 887 6667654
No 436
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.21 E-value=2.2e-05 Score=89.17 Aligned_cols=204 Identities=16% Similarity=0.251 Sum_probs=112.0
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEe-chhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCIN-GPEIM 260 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~-~~~~~ 260 (772)
+..+.+.+++.-..+.+++++.++...+. +-...+-+||+|||||||||.++.||++++..+..-. ...+.
T Consensus 12 ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~ 83 (519)
T PF03215_consen 12 KYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFR 83 (519)
T ss_pred hcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcc
Confidence 45667788899999999999999975221 1223445889999999999999999999987765532 22210
Q ss_pred ------hhcccch------HHHHHHHHHH-----HHH-----------cCCceEEeccccccccCCCCCchhhHHHHHHH
Q 044198 261 ------SKMAGES------ESNLREAFNV-----AEK-----------NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQ 312 (772)
Q Consensus 261 ------~~~~g~~------~~~l~~~f~~-----a~~-----------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 312 (772)
..+.+.. .... ..|.. .+. ..+.||+|||+-.+... +. .++.+.
T Consensus 84 ~~~~~~~d~~s~~~~~~~f~sq~-~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~------~~-~~f~~~ 155 (519)
T PF03215_consen 84 ESDNQEDDFESDFNKFDEFLSQS-DKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR------DT-SRFREA 155 (519)
T ss_pred ccccccccccccccccccccchh-hhhccccccccccccccccCCCcCCCceEEEeeccccccch------hH-HHHHHH
Confidence 0111100 0111 11221 111 23569999998543321 11 455566
Q ss_pred HHHHhhcccccC-ceEEEEe-eCC------C--------CCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhcc----
Q 044198 313 LLTLMDGMKSRA-HVMVIGA-TNR------P--------NSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKN---- 372 (772)
Q Consensus 313 L~~lld~~~~~~-~v~vI~a-tn~------~--------~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~---- 372 (772)
|.+.+..- +. ++++|.+ ++. . ..+++.+....+. ..|.|.+-...-....|+..+..
T Consensus 156 L~~~l~~~--~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~ 232 (519)
T PF03215_consen 156 LRQYLRSS--RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARS 232 (519)
T ss_pred HHHHHHcC--CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhh
Confidence 66665532 23 6666666 111 1 1346666654344 44888877765544444432221
Q ss_pred ----CCccccc-chhHHHHHhcCCchhhHHHHHHHHHHHhh
Q 044198 373 ----MKLAEDV-NLETVARETHGFVGADLAALCTEGAMQCI 408 (772)
Q Consensus 373 ----~~l~~~~-~l~~la~~t~g~~~~dl~~l~~~a~~~~~ 408 (772)
....... .++.++..+ .+||+..+....+.+.
T Consensus 233 ~~~~~~~p~~~~~l~~I~~~s----~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 233 SSGKNKVPDKQSVLDSIAESS----NGDIRSAINNLQFWCL 269 (519)
T ss_pred hcCCccCCChHHHHHHHHHhc----CchHHHHHHHHHHHhc
Confidence 1111111 255666554 3577766655444443
No 437
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.21 E-value=1.9e-07 Score=95.19 Aligned_cols=116 Identities=21% Similarity=0.240 Sum_probs=85.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhh-hcccchHHHHHHHHHHHHHcCCceEEecccccccc
Q 044198 220 VKPPKGILLHGPPGTGKTLLARAIANETGCY--FLCINGPEIMS-KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAP 296 (772)
Q Consensus 220 ~~~~~~vLL~GppGtGKT~Lar~la~~l~~~--~~~v~~~~~~~-~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~ 296 (772)
+.....++|+|++|||||||++.+++.+... .+.+++..+.. +...+..+.+..+||++..+.-+-.+.||+.+.+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~ 106 (235)
T COG1122 27 IEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLE 106 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchh
Confidence 4556679999999999999999999987432 35677665442 33444556677789999888777778999999999
Q ss_pred CCCCCchhhHHHHHHHH-------------HHHhhcccccCceEEEEeeCCC
Q 044198 297 KREKTHGEVEKRIVSQL-------------LTLMDGMKSRAHVMVIGATNRP 335 (772)
Q Consensus 297 ~~~~~~~~~~~~v~~~L-------------~~lld~~~~~~~v~vI~atn~~ 335 (772)
+.+....++.+++...| .++++|.+++..+..+.+++|.
T Consensus 107 n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~ 158 (235)
T COG1122 107 NLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPE 158 (235)
T ss_pred hcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCC
Confidence 88877777777776665 3456677777777766666653
No 438
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=3.5e-05 Score=82.34 Aligned_cols=151 Identities=17% Similarity=0.273 Sum_probs=95.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCe---------------------EEEEe-chhhhhhc--ccchHHHHHHHHHHH
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCY---------------------FLCIN-GPEIMSKM--AGESESNLREAFNVA 278 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~---------------------~~~v~-~~~~~~~~--~g~~~~~l~~~f~~a 278 (772)
+..+||+||+|+||+++|.++|+.+-+. +..+. .++-.+.. ..-....++.+.+.+
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 5579999999999999999999876321 11111 00000000 001234455555443
Q ss_pred HH----cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEe
Q 044198 279 EK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDI 354 (772)
Q Consensus 279 ~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i 354 (772)
.. ...-|++||++|.+.. ...+.|+..++.-. .++.+|.+|+.++.|-|.+++ |... +.|
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp--~~~~fiL~~~~~~~lLpTIrS--RCq~-i~~ 169 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAINR-----------AACNALLKTLEEPS--PGRYLWLISAQPARLPATIRS--RCQR-LEF 169 (319)
T ss_pred hhCcccCCcEEEEeccHhhhCH-----------HHHHHHHHHhhCCC--CCCeEEEEECChhhCchHHHh--hheE-eeC
Confidence 32 2335999999998843 34578888888743 467777888889999999998 7754 789
Q ss_pred CCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchh
Q 044198 355 GVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGA 394 (772)
Q Consensus 355 ~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~ 394 (772)
+.|+.++-.+.|... ... ..+...++..+.|-.+.
T Consensus 170 ~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~ 204 (319)
T PRK08769 170 KLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGL 204 (319)
T ss_pred CCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHH
Confidence 999998887777642 111 11233455555555443
No 439
>PF05729 NACHT: NACHT domain
Probab=98.17 E-value=1.4e-05 Score=77.18 Aligned_cols=141 Identities=21% Similarity=0.282 Sum_probs=76.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhC---------CeEEEEechhhhhhc------------ccchHHHHHHHHH-HHHHcC
Q 044198 225 GILLHGPPGTGKTLLARAIANETG---------CYFLCINGPEIMSKM------------AGESESNLREAFN-VAEKNA 282 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~---------~~~~~v~~~~~~~~~------------~g~~~~~l~~~f~-~a~~~~ 282 (772)
-++|+|+||+|||++++.++..+. ..++.+.+.+..... ...........+. ......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 479999999999999999997651 112333333322110 0011111111121 223345
Q ss_pred CceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHH
Q 044198 283 PSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGR 362 (772)
Q Consensus 283 p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r 362 (772)
..+++||.+|.+...... .....+...|..++.... ..++-++.++++.. ... +.+...-...+++...+.++.
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~~~-~~~~~liit~r~~~-~~~-~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQAL-PPGVKLIITSRPRA-FPD-LRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhhcc-CCCCeEEEEEcCCh-HHH-HHHhcCCCcEEEECCCCHHHH
Confidence 678999999998764332 122334445555555411 22344444554332 211 322111124588888899999
Q ss_pred HHHHHHHhc
Q 044198 363 LEVLRIHTK 371 (772)
Q Consensus 363 ~~Il~~~~~ 371 (772)
.++++.+++
T Consensus 156 ~~~~~~~f~ 164 (166)
T PF05729_consen 156 KQYLRKYFS 164 (166)
T ss_pred HHHHHHHhh
Confidence 999887764
No 440
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=1.9e-05 Score=85.31 Aligned_cols=131 Identities=16% Similarity=0.202 Sum_probs=88.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeE----------------EEEechhhhhhcc-----cchHHHHHHHHHHH--
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETGCYF----------------LCINGPEIMSKMA-----GESESNLREAFNVA-- 278 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~~~~----------------~~v~~~~~~~~~~-----g~~~~~l~~~f~~a-- 278 (772)
.+..+||+||+|+||+++|+++|..+-+.- ..-+-+|+.--.+ .-....++.+.+.+
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhh
Confidence 356799999999999999999998773210 0000011110000 01233455544433
Q ss_pred --HHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCC
Q 044198 279 --EKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGV 356 (772)
Q Consensus 279 --~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~ 356 (772)
.....-|++||++|.+.. ...+.|+..++.- ..++++|.+|+.++.|-|.+++ |... +.+++
T Consensus 103 ~~~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEP--p~~t~fiL~t~~~~~lLpTIrS--RCq~-~~~~~ 166 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLTD-----------AAANALLKTLEEP--PENTWFFLACREPARLLATLRS--RCRL-HYLAP 166 (334)
T ss_pred ccccCCceEEEEcchHhhCH-----------HHHHHHHHHhcCC--CCCeEEEEEECChhhChHHHHh--cccc-ccCCC
Confidence 334456999999998753 3458899998873 4578888899999999999998 7764 78999
Q ss_pred CCHHHHHHHHHH
Q 044198 357 PDEVGRLEVLRI 368 (772)
Q Consensus 357 p~~~~r~~Il~~ 368 (772)
|+.++..+.|..
T Consensus 167 ~~~~~~~~~L~~ 178 (334)
T PRK07993 167 PPEQYALTWLSR 178 (334)
T ss_pred CCHHHHHHHHHH
Confidence 998887777753
No 441
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.17 E-value=7.4e-06 Score=94.36 Aligned_cols=123 Identities=13% Similarity=0.075 Sum_probs=87.3
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhC--CcEEEEecccchhcccccc--hHHH--------HHHHHHHHhCCCeEEEEcC
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLTMWFGES--EANV--------RDVFDKARQSAPCVLFFDE 563 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~--~~~i~v~~~~l~~~~vg~s--e~~i--------~~vf~~a~~~~p~ilfiDE 563 (772)
..|++|.|+.|++||+++++++..+- .||+.+..+--....+|.. +..+ ..++..|.. .|||+||
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe 101 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAM 101 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecC
Confidence 36899999999999999999999975 4887765554444555543 1211 112223322 4999999
Q ss_pred chhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-----------CCCcEEEEeecCCC---CCCCccccCCCCccccccC
Q 044198 564 LDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-----------AKKTVFVIGATNRP---DMIDPALLRPGRLDQLIYI 629 (772)
Q Consensus 564 id~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-----------~~~~v~vi~aTn~~---~~ld~allrpgRf~~~i~~ 629 (772)
+..+ .+.+++.|++.|+... -..++++|++-|.. ..|.++++- ||+..+.+
T Consensus 102 ~n~~-------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 102 AERL-------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred cccC-------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 9777 4778999999998531 12567888874432 347788987 99999999
Q ss_pred CCCCHHH
Q 044198 630 PLPDEHS 636 (772)
Q Consensus 630 ~~p~~~~ 636 (772)
+.|+..+
T Consensus 167 ~~~~~~~ 173 (584)
T PRK13406 167 DGLALRD 173 (584)
T ss_pred CCCChHH
Confidence 9887654
No 442
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.16 E-value=1.2e-05 Score=91.87 Aligned_cols=169 Identities=22% Similarity=0.306 Sum_probs=101.0
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhcc-----cccchH-------HHHHHHHHHHhCCCeEEE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMW-----FGESEA-------NVRDVFDKARQSAPCVLF 560 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~-----vg~se~-------~i~~vf~~a~~~~p~ilf 560 (772)
...+++.|++|||||++|+++.... +.+|+.+++..+-..+ .|.... .....|..| ....||
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~ 237 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQA---DGGTLF 237 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEE
Confidence 4569999999999999999999876 4689999998763211 111100 001112222 235899
Q ss_pred EcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-----C----CCcEEEEeecCCCC-------CCCccccCCCCcc
Q 044198 561 FDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-----A----KKTVFVIGATNRPD-------MIDPALLRPGRLD 624 (772)
Q Consensus 561 iDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-----~----~~~v~vi~aTn~~~-------~ld~allrpgRf~ 624 (772)
|||++.+. ..+...|+..++... . ..++-+|+||+..- .+.+.|.. ||.
T Consensus 238 l~~i~~l~-------------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~ 302 (469)
T PRK10923 238 LDEIGDMP-------------LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN 302 (469)
T ss_pred EeccccCC-------------HHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc
Confidence 99999983 456677888876432 1 13467888887631 34455554 664
Q ss_pred -ccccCCCCCH--HHHHHHHHHhhccC----CCC----CcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 044198 625 -QLIYIPLPDE--HSRLQIFKSCLRKS----PVS----KDIDLKAIAKYTHGFSGADITEICQRACKCA 682 (772)
Q Consensus 625 -~~i~~~~p~~--~~r~~Il~~~~~~~----~~~----~~~~~~~la~~~~g~sg~di~~l~~~a~~~a 682 (772)
..|.+|+... ++...+++.++++. ... .+.-+..|.++.=--+-++|+++++.|...+
T Consensus 303 ~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 5555555422 33445555555332 111 2223444444432235699999999887654
No 443
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.14 E-value=9.6e-06 Score=83.36 Aligned_cols=100 Identities=31% Similarity=0.351 Sum_probs=62.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcccch---HHHHHHHHHHHHHcCCceEEeccccccccC
Q 044198 224 KGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKMAGES---ESNLREAFNVAEKNAPSIIFIDEIDSIAPK 297 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~~g~~---~~~l~~~f~~a~~~~p~il~iDEid~l~~~ 297 (772)
.+++|+|+||||||+|+.+++..+ +..++.++..++........ ......+++... ...+|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 589999999999999999999987 66778888877765432211 112233444433 467999999976531
Q ss_pred CCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCC
Q 044198 298 REKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP 335 (772)
Q Consensus 298 ~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~ 335 (772)
.+... ..|..+++.... ..-.+|.+||..
T Consensus 177 -----s~~~~---~~l~~Ii~~Ry~-~~~~tiitSNl~ 205 (244)
T PRK07952 177 -----SRYEK---VIINQIVDRRSS-SKRPTGMLTNSN 205 (244)
T ss_pred -----CHHHH---HHHHHHHHHHHh-CCCCEEEeCCCC
Confidence 12222 345556655332 223445577754
No 444
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.14 E-value=8.2e-06 Score=86.99 Aligned_cols=70 Identities=27% Similarity=0.493 Sum_probs=48.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcccch-HHHHHHHHHHHHHcCCceEEeccccc
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKMAGES-ESNLREAFNVAEKNAPSIIFIDEIDS 293 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~~g~~-~~~l~~~f~~a~~~~p~il~iDEid~ 293 (772)
..+|++|+||+|||||+|+.++|+++ +..+..+..++++....... ...+...++.. ....+|+|||+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~ 228 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGA 228 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCC
Confidence 45789999999999999999999987 66777788777654432111 01122333332 2456999999964
No 445
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=8.6e-06 Score=87.60 Aligned_cols=131 Identities=21% Similarity=0.320 Sum_probs=86.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCe-------------------------EEEEechhhhhhccc-----chHHH
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANETGCY-------------------------FLCINGPEIMSKMAG-----ESESN 270 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l~~~-------------------------~~~v~~~~~~~~~~g-----~~~~~ 270 (772)
..+..+||+||+|+|||++|+.+|+.+.+. ++.+....- ....| -.-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~-~~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD-EPENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc-cccccccCCCcCHHH
Confidence 346679999999999999999999986421 222221100 00001 12445
Q ss_pred HHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccC
Q 044198 271 LREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSG 346 (772)
Q Consensus 271 l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~g 346 (772)
++.+.+.+.. ....|+++|+++.+-+ ...+.|+..++... ..+.+|.+|+.++.+.+.+++
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~-----------~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S-- 162 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNL-----------QAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS-- 162 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCH-----------HHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--
Confidence 6666555543 3345889999987742 33467777777654 246677788888899999887
Q ss_pred CceeEEEeCCCCHHHHHHHHHH
Q 044198 347 RFDKEIDIGVPDEVGRLEVLRI 368 (772)
Q Consensus 347 Rf~~~i~i~~p~~~~r~~Il~~ 368 (772)
|.. .+.|++|+.++..+.|..
T Consensus 163 Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hhh-hhcCCCCCHHHHHHHHHh
Confidence 553 378899999888777754
No 446
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.13 E-value=6.5e-06 Score=93.94 Aligned_cols=168 Identities=21% Similarity=0.313 Sum_probs=99.9
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhcc-----cccchH----HH---HHHHHHHHhCCCeEEE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMW-----FGESEA----NV---RDVFDKARQSAPCVLF 560 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~-----vg~se~----~i---~~vf~~a~~~~p~ilf 560 (772)
...+++.|.+||||+++|+++.... +.+|+.+++..+...+ .|.... .. ...|. ......||
T Consensus 157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ 233 (463)
T TIGR01818 157 DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFE---QADGGTLF 233 (463)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEE---ECCCCeEE
Confidence 3469999999999999999998775 4689999987653221 121100 00 01122 22346899
Q ss_pred EcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC---------CCCcEEEEeecCCCC-------CCCccccCCCCcc
Q 044198 561 FDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS---------AKKTVFVIGATNRPD-------MIDPALLRPGRLD 624 (772)
Q Consensus 561 iDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~---------~~~~v~vi~aTn~~~-------~ld~allrpgRf~ 624 (772)
||||+.+. ..+...|+..|+... ...++-+|+||+..- .+.+.+.. |+.
T Consensus 234 l~ei~~l~-------------~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~ 298 (463)
T TIGR01818 234 LDEIGDMP-------------LDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLN 298 (463)
T ss_pred EEchhhCC-------------HHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC
Confidence 99999983 445667777776421 012567888887642 33344443 554
Q ss_pred -ccccCCCCC--HHHHHHHHHHhhccC----CCC----CcccHHHHHHHcCCC--CHHHHHHHHHHHHHHHH
Q 044198 625 -QLIYIPLPD--EHSRLQIFKSCLRKS----PVS----KDIDLKAIAKYTHGF--SGADITEICQRACKCAI 683 (772)
Q Consensus 625 -~~i~~~~p~--~~~r~~Il~~~~~~~----~~~----~~~~~~~la~~~~g~--sg~di~~l~~~a~~~a~ 683 (772)
..|++|+.. .++...+++.++++. ... ++.-+..|.++ +| +-++|++++..|...+-
T Consensus 299 ~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--~wpgNvreL~~~~~~~~~~~~ 368 (463)
T TIGR01818 299 VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL--RWPGNVRQLENLCRWLTVMAS 368 (463)
T ss_pred cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC--CCCChHHHHHHHHHHHHHhCC
Confidence 366666654 345556666555332 111 22223444443 34 45999999999877653
No 447
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=4.8e-05 Score=81.18 Aligned_cols=128 Identities=16% Similarity=0.258 Sum_probs=88.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCe-----------------------EEEEechhhhhhcccchHHHHHHHHHHH
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETGCY-----------------------FLCINGPEIMSKMAGESESNLREAFNVA 278 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~~~-----------------------~~~v~~~~~~~~~~g~~~~~l~~~f~~a 278 (772)
.+..+||+||.|+||+++|+.+|+.+-+. ++.+.... .++. -....++.+.+.+
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~--I~vdqiR~l~~~~ 100 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKS--ITVEQIRQCNRLA 100 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCc--CCHHHHHHHHHHH
Confidence 35679999999999999999999876321 11121100 0000 1233455544333
Q ss_pred H----HcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEe
Q 044198 279 E----KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDI 354 (772)
Q Consensus 279 ~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i 354 (772)
. ....-|++||++|.+.. ...+.|+..++.- ..++++|..|+.++.+-|.+++ |... +.|
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEP--p~~t~fiL~t~~~~~lLpTI~S--RCq~-~~~ 164 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMNE-----------SASNALLKTLEEP--APNCLFLLVTHNQKRLLPTIVS--RCQQ-WVV 164 (319)
T ss_pred hhCcccCCceEEEecchhhhCH-----------HHHHHHHHHhcCC--CCCeEEEEEECChhhChHHHHh--ccee-EeC
Confidence 2 23346999999998742 3457888888874 4568888889999999999998 7754 889
Q ss_pred CCCCHHHHHHHHHH
Q 044198 355 GVPDEVGRLEVLRI 368 (772)
Q Consensus 355 ~~p~~~~r~~Il~~ 368 (772)
+.|+.++..+.|..
T Consensus 165 ~~~~~~~~~~~L~~ 178 (319)
T PRK06090 165 TPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999988887764
No 448
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.11 E-value=9.5e-06 Score=92.00 Aligned_cols=167 Identities=22% Similarity=0.308 Sum_probs=93.9
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhcc-----cccchHH-------HHHHHHHHHhCCCeEEE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMW-----FGESEAN-------VRDVFDKARQSAPCVLF 560 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~-----vg~se~~-------i~~vf~~a~~~~p~ilf 560 (772)
...++++|.+||||+++|+++.... +.+|+.+++..+...+ .|..... ....|. .....+||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ 238 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFV---EADGGTLF 238 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCcee---ECCCCEEE
Confidence 4569999999999999999998665 4689999998653221 1110000 001122 22346999
Q ss_pred EcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCC---------CCcEEEEeecCCCCCCCccccCCCCccc------
Q 044198 561 FDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSA---------KKTVFVIGATNRPDMIDPALLRPGRLDQ------ 625 (772)
Q Consensus 561 iDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~---------~~~v~vi~aTn~~~~ld~allrpgRf~~------ 625 (772)
||||+.+. ......|+..++...- ..++-+|+||+.+- .....+|+|..
T Consensus 239 ldei~~l~-------------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l 302 (441)
T PRK10365 239 LDEIGDIS-------------PMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL---AAEVNAGRFRQDLYYRL 302 (441)
T ss_pred EeccccCC-------------HHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHHh
Confidence 99999984 4456677887765320 12456888887632 12223344431
Q ss_pred -cccCCCCCHHHH----HHHHHHhhccC----CC----CCcccHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 044198 626 -LIYIPLPDEHSR----LQIFKSCLRKS----PV----SKDIDLKAIAKYTHGFSGADITEICQRACKC 681 (772)
Q Consensus 626 -~i~~~~p~~~~r----~~Il~~~~~~~----~~----~~~~~~~~la~~~~g~sg~di~~l~~~a~~~ 681 (772)
.+.+..|...+| ..+++.++++. .. -.+..+..|..+.=--+.++++++++.|...
T Consensus 303 ~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred ccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 344455555444 34555554331 11 1222334444433122458888888877654
No 449
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.11 E-value=5.7e-05 Score=86.02 Aligned_cols=29 Identities=34% Similarity=0.505 Sum_probs=25.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET 247 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l 247 (772)
.+.+...+-|+|+.|+|||||.+.|++..
T Consensus 25 ~~~~G~riGLvG~NGaGKSTLLkilaG~~ 53 (530)
T COG0488 25 TLNPGERIGLVGRNGAGKSTLLKILAGEL 53 (530)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34566779999999999999999999876
No 450
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.10 E-value=2.1e-05 Score=89.62 Aligned_cols=168 Identities=25% Similarity=0.374 Sum_probs=96.3
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhc-----ccccchH-------HHHHHHHHHHhCCCeEEE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM-----WFGESEA-------NVRDVFDKARQSAPCVLF 560 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~-----~vg~se~-------~i~~vf~~a~~~~p~ilf 560 (772)
...++++|++||||+++|+++.... +.+|+.+++..+-.. ..|.... .....|..|. ..+||
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~ 242 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERAN---EGTLL 242 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECC---CCEEE
Confidence 3569999999999999999998764 468999998875322 1121000 0011232232 35999
Q ss_pred EcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-----C----CCcEEEEeecCCCC-------CCCccccCCCCcc
Q 044198 561 FDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-----A----KKTVFVIGATNRPD-------MIDPALLRPGRLD 624 (772)
Q Consensus 561 iDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-----~----~~~v~vi~aTn~~~-------~ld~allrpgRf~ 624 (772)
|||||.+. ..+...|+..++... . ..++-+|+|||.+- .+.+.+.. |+.
T Consensus 243 ld~i~~l~-------------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~ 307 (457)
T PRK11361 243 LDEIGEMP-------------LVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN 307 (457)
T ss_pred EechhhCC-------------HHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc
Confidence 99999983 446777888876431 1 13478899998642 22233332 332
Q ss_pred ccccCCCCCHHHHH----HHHHHhhccC----CCC-Cccc---HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 044198 625 QLIYIPLPDEHSRL----QIFKSCLRKS----PVS-KDID---LKAIAKYTHGFSGADITEICQRACKCA 682 (772)
Q Consensus 625 ~~i~~~~p~~~~r~----~Il~~~~~~~----~~~-~~~~---~~~la~~~~g~sg~di~~l~~~a~~~a 682 (772)
.+.+..|...+|. .++..++++. ... ..++ +..|..+.=--+-+++++++..|...+
T Consensus 308 -~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 308 -VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred -cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC
Confidence 3445555555553 2444444322 111 1223 334444332235689999988876543
No 451
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=7e-05 Score=78.69 Aligned_cols=155 Identities=15% Similarity=0.213 Sum_probs=95.9
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHhCCcE----------------EEEecccchhcc-ccc--chHHHHHHHHHHHh-
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANECQANF----------------ISIKGPELLTMW-FGE--SEANVRDVFDKARQ- 553 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~~~~~----------------i~v~~~~l~~~~-vg~--se~~i~~vf~~a~~- 553 (772)
+.+..+||+|| .||+++|+.+|..+-+.- ..-+.+|+.--. .|. .-..||++-+.+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 34567999996 689999999997653210 011223332100 011 13456666555433
Q ss_pred ---CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCC
Q 044198 554 ---SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIP 630 (772)
Q Consensus 554 ---~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~ 630 (772)
+...|++||++|.+ +....|.||..|+. +..++++|..|+.++.+-|-+.+ |+. ++.|+
T Consensus 100 p~~~~~kV~II~~ad~m-------------~~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rcq-~i~f~ 161 (290)
T PRK07276 100 GYEGKQQVFIIKDADKM-------------HVNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RTQ-IFHFP 161 (290)
T ss_pred cccCCcEEEEeehhhhc-------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cce-eeeCC
Confidence 33479999999998 35678999999995 45567888888889999898887 996 78886
Q ss_pred CCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHH
Q 044198 631 LPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQ 676 (772)
Q Consensus 631 ~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~ 676 (772)
. +.++..+++.. .++.. +...++....| |......+..
T Consensus 162 ~-~~~~~~~~L~~----~g~~~--~~a~~la~~~~-s~~~A~~l~~ 199 (290)
T PRK07276 162 K-NEAYLIQLLEQ----KGLLK--TQAELLAKLAQ-STSEAEKLAQ 199 (290)
T ss_pred C-cHHHHHHHHHH----cCCCh--HHHHHHHHHCC-CHHHHHHHhC
Confidence 6 55555555542 23322 22233333334 5555555553
No 452
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.08 E-value=6.7e-05 Score=82.56 Aligned_cols=174 Identities=17% Similarity=0.181 Sum_probs=95.3
Q ss_pred CceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchh-c-c-----cccchH---HHHH---HHHHHH-----------
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT-M-W-----FGESEA---NVRD---VFDKAR----------- 552 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~-~-~-----vg~se~---~i~~---vf~~a~----------- 552 (772)
+-+||.||+||||||.++.++++++..++....+-... . + .+.... .+.. ....+.
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~ 190 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDD 190 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccc
Confidence 34889999999999999999999999888765321100 0 0 000000 1111 111221
Q ss_pred -hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCC------Cccc
Q 044198 553 -QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPG------RLDQ 625 (772)
Q Consensus 553 -~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpg------Rf~~ 625 (772)
...+.+|++||+=..+..- ..+.+..+|.++-......-|++|.-.+.++..++-.+.|- |++
T Consensus 191 ~~~~~~liLveDLPn~~~~d---------~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~- 260 (634)
T KOG1970|consen 191 LRTDKKLILVEDLPNQFYRD---------DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS- 260 (634)
T ss_pred cccCceEEEeeccchhhhhh---------hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcc-
Confidence 1235699999986665331 13344444554433322222333333334454444333211 555
Q ss_pred cccCCCCCHHHHHHHHHHhhccCCC--C-----CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 044198 626 LIYIPLPDEHSRLQIFKSCLRKSPV--S-----KDIDLKAIAKYTHGFSGADITEICQRACKCAIR 684 (772)
Q Consensus 626 ~i~~~~p~~~~r~~Il~~~~~~~~~--~-----~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~ 684 (772)
.|.|.+-...-.++.++..++.... . ..-.++.++.. +++||+.++....+-+..
T Consensus 261 ~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~----s~GDIRsAInsLQlsssk 322 (634)
T KOG1970|consen 261 NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQG----SGGDIRSAINSLQLSSSK 322 (634)
T ss_pred eEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHh----cCccHHHHHhHhhhhccc
Confidence 7888877777777777776644322 1 12334444443 456999988888776533
No 453
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.08 E-value=0.00012 Score=74.00 Aligned_cols=173 Identities=19% Similarity=0.225 Sum_probs=108.5
Q ss_pred ccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh-CCe----------E----
Q 044198 187 GYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET-GCY----------F---- 251 (772)
Q Consensus 187 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l-~~~----------~---- 251 (772)
+++.+.+.+++...++.+..- ..-.++++|||+|+||-|.+.++-+++ |.. |
T Consensus 11 sl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS 77 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPS 77 (351)
T ss_pred hhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCC
Confidence 444455666665555544431 112479999999999999999988876 211 0
Q ss_pred --------------EEEechhhhhhcccch-HHHHHHHHHHHHHcC---------CceEEeccccccccCCCCCchhhHH
Q 044198 252 --------------LCINGPEIMSKMAGES-ESNLREAFNVAEKNA---------PSIIFIDEIDSIAPKREKTHGEVEK 307 (772)
Q Consensus 252 --------------~~v~~~~~~~~~~g~~-~~~l~~~f~~a~~~~---------p~il~iDEid~l~~~~~~~~~~~~~ 307 (772)
+.++.++ .|.. +-.+++++++..+.. -.+++|-|.|.|..
T Consensus 78 ~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~----------- 141 (351)
T KOG2035|consen 78 KKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR----------- 141 (351)
T ss_pred CceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH-----------
Confidence 1111111 1222 233455555443322 24888999987753
Q ss_pred HHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHH
Q 044198 308 RIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVAR 386 (772)
Q Consensus 308 ~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~ 386 (772)
.....|..-|+.+.. ++-+|..||....+-+++++ |.- .+.++.|+.++-..++...+++-.+. +...+..+++
T Consensus 142 dAQ~aLRRTMEkYs~--~~RlIl~cns~SriIepIrS--RCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~ 216 (351)
T KOG2035|consen 142 DAQHALRRTMEKYSS--NCRLILVCNSTSRIIEPIRS--RCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAE 216 (351)
T ss_pred HHHHHHHHHHHHHhc--CceEEEEecCcccchhHHhh--hee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHH
Confidence 334677777877654 45667789999999999998 542 28899999999999998776543332 2334567777
Q ss_pred HhcCCch
Q 044198 387 ETHGFVG 393 (772)
Q Consensus 387 ~t~g~~~ 393 (772)
.+.|-..
T Consensus 217 kS~~nLR 223 (351)
T KOG2035|consen 217 KSNRNLR 223 (351)
T ss_pred HhcccHH
Confidence 7665443
No 454
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.07 E-value=7.9e-05 Score=79.15 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=26.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 044198 220 VKPPKGILLHGPPGTGKTLLARAIANETGC 249 (772)
Q Consensus 220 ~~~~~~vLL~GppGtGKT~Lar~la~~l~~ 249 (772)
+.+...+-|+|++|||||..+.++.+.+..
T Consensus 33 i~~GEtlAlVGESGSGKSvTa~sim~LLp~ 62 (534)
T COG4172 33 IEAGETLALVGESGSGKSVTALSILGLLPS 62 (534)
T ss_pred ecCCCEEEEEecCCCCccHHHHHHHHhcCC
Confidence 455677999999999999999999998754
No 455
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.06 E-value=7.3e-05 Score=80.87 Aligned_cols=186 Identities=20% Similarity=0.259 Sum_probs=120.1
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC----C-eEEEEechhhh---
Q 044198 189 EDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG----C-YFLCINGPEIM--- 260 (772)
Q Consensus 189 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~----~-~~~~v~~~~~~--- 260 (772)
..+.|-+.++..+++++..++.. ..+..+.+.|-||||||.+..-+-..+. . ..+++||..+.
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~---------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLEL---------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhc---------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 45789999999999999876533 4566799999999999998886654442 2 34788886532
Q ss_pred ---hh----c----c-cchHHHHHHHHHHHHH-c-CCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcc-cccCc
Q 044198 261 ---SK----M----A-GESESNLREAFNVAEK-N-APSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGM-KSRAH 325 (772)
Q Consensus 261 ---~~----~----~-g~~~~~l~~~f~~a~~-~-~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~-~~~~~ 325 (772)
.+ + . +.........|+.-.. . .+-++++||+|.|+.... ..|++++..- ....+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~-----------~vLy~lFewp~lp~sr 289 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ-----------TVLYTLFEWPKLPNSR 289 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc-----------ceeeeehhcccCCcce
Confidence 11 1 1 1112223334433322 2 367899999999984432 2233333321 23457
Q ss_pred eEEEEeeCCCCCCChhhhc----cCCceeEEEeCCCCHHHHHHHHHHHhccCCcccc--cchhHHHHHhcCCchh
Q 044198 326 VMVIGATNRPNSIDPALRR----SGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAED--VNLETVARETHGFVGA 394 (772)
Q Consensus 326 v~vI~atn~~~~ld~al~r----~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~--~~l~~la~~t~g~~~~ 394 (772)
+++||..|..+.-|..|-+ .+--...+.|++++.++-.+||+..+........ ..++..|+...+.+|.
T Consensus 290 ~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGD 364 (529)
T KOG2227|consen 290 IILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGD 364 (529)
T ss_pred eeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchh
Confidence 8899999887544433322 2233567899999999999999988766544322 3467788888888773
No 456
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=2.1e-05 Score=80.52 Aligned_cols=121 Identities=11% Similarity=0.114 Sum_probs=82.5
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHhCCc--------------EEEEecccchhcc-cc--cchHHHHHHHHHHH----
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANECQAN--------------FISIKGPELLTMW-FG--ESEANVRDVFDKAR---- 552 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~~~~--------------~i~v~~~~l~~~~-vg--~se~~i~~vf~~a~---- 552 (772)
.++..+||+||+|+||..+|.++|..+-+. +-.-..+|+.--+ .+ -.-..+|++-+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 356779999999999999999999776221 1111223322100 00 11234455444332
Q ss_pred h-CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCC
Q 044198 553 Q-SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPL 631 (772)
Q Consensus 553 ~-~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~ 631 (772)
. ....|++||++|.+ .....|.||..|+. +..++++|..|+.++.+-|-+++ |+. .+.|+.
T Consensus 85 e~~~~KV~II~~ae~m-------------~~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~~ 146 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL-------------NKQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYVVLS 146 (261)
T ss_pred hcCCCEEEEeccHhhh-------------CHHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eeecCC
Confidence 2 23579999999998 35678999999995 56688889999999999999997 986 566666
Q ss_pred C
Q 044198 632 P 632 (772)
Q Consensus 632 p 632 (772)
+
T Consensus 147 ~ 147 (261)
T PRK05818 147 K 147 (261)
T ss_pred h
Confidence 6
No 457
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.06 E-value=1.3e-05 Score=76.92 Aligned_cols=110 Identities=22% Similarity=0.257 Sum_probs=62.1
Q ss_pred eEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhc----------------------cccc--chHHHHHHHHHH
Q 044198 499 VLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM----------------------WFGE--SEANVRDVFDKA 551 (772)
Q Consensus 499 iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~----------------------~vg~--se~~i~~vf~~a 551 (772)
++++||||+|||+++..++... +.+.+.+........ +... .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999876 455555554432211 0000 011112234556
Q ss_pred HhCCCeEEEEcCchhhhhccCCC-CCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCC
Q 044198 552 RQSAPCVLFFDELDSIAIQRGSS-VGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDM 612 (772)
Q Consensus 552 ~~~~p~ilfiDEid~l~~~r~~~-~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 612 (772)
....|.++++||+..+....... .+......+.+..++..+. ..++.+|++++.+..
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~~ 139 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPSG 139 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCCc
Confidence 66778999999999987553210 0011112333334444433 235667777765543
No 458
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.04 E-value=1.9e-05 Score=75.83 Aligned_cols=110 Identities=24% Similarity=0.351 Sum_probs=60.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc----------------------c--cchHHHHHHHHHHH
Q 044198 226 ILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKM----------------------A--GESESNLREAFNVA 278 (772)
Q Consensus 226 vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~----------------------~--g~~~~~l~~~f~~a 278 (772)
++|+||||+|||+++..++... +.+++.++........ . .............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999876 4555555543221100 0 00111112234455
Q ss_pred HHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCC
Q 044198 279 EKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPN 336 (772)
Q Consensus 279 ~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~ 336 (772)
....+.+++|||+..+.+......+.....+...+..++...+. .++.+|.+++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK-GGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc-CCceEEEEEecCC
Confidence 56778899999999886542210001112223344444443332 3566666665543
No 459
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=3.1e-05 Score=91.44 Aligned_cols=128 Identities=23% Similarity=0.320 Sum_probs=89.5
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhHHHHhCC-CCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh---
Q 044198 189 EDVGGVRKQLGQIREVVELPLRHPQIFKALGV-KPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMS--- 261 (772)
Q Consensus 189 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~-~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~--- 261 (772)
..|.|+++++..|-+++..+... ++- .+.-.++|.||.|+|||-||+++|..+ ...++.++.+++..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~g------l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAG------LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcc------cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhh
Confidence 35889999999998888764321 111 245569999999999999999999987 34688888876331
Q ss_pred ------hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc---------ccCce
Q 044198 262 ------KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK---------SRAHV 326 (772)
Q Consensus 262 ------~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~---------~~~~v 326 (772)
.|.|. .....+....+....+|++|||||..- ..+.+.|+.++|.-+ .-.++
T Consensus 636 ligsp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkAh-----------~~v~n~llq~lD~GrltDs~Gr~Vd~kN~ 702 (898)
T KOG1051|consen 636 LIGSPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKAH-----------PDVLNILLQLLDRGRLTDSHGREVDFKNA 702 (898)
T ss_pred ccCCCcccccc--hhHHHHHHHHhcCCceEEEEechhhcC-----------HHHHHHHHHHHhcCccccCCCcEeeccce
Confidence 13332 234456666666667899999998542 345677777776432 22578
Q ss_pred EEEEeeCCC
Q 044198 327 MVIGATNRP 335 (772)
Q Consensus 327 ~vI~atn~~ 335 (772)
+||+|+|.-
T Consensus 703 I~IMTsn~~ 711 (898)
T KOG1051|consen 703 IFIMTSNVG 711 (898)
T ss_pred EEEEecccc
Confidence 999998864
No 460
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.01 E-value=8e-06 Score=73.11 Aligned_cols=94 Identities=23% Similarity=0.252 Sum_probs=52.3
Q ss_pred eEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCC
Q 044198 499 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDG 578 (772)
Q Consensus 499 iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~ 578 (772)
|.|+||||+|||++|+.+|..+...+-.-....++. ++...-|-..+... .++++||+......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~-------~~~~~~~w~gY~~q-~vvi~DD~~~~~~~-------- 64 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYT-------RNPGDKFWDGYQGQ-PVVIIDDFGQDNDG-------- 64 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEe-------CCCccchhhccCCC-cEEEEeecCccccc--------
Confidence 579999999999999999987643221111111111 01111122333334 38999998765311
Q ss_pred CchhHHHHHHHHHhcCCC---------C----CCcEEEEeecCC
Q 044198 579 GGVDRIVNQLLTEMDGLS---------A----KKTVFVIGATNR 609 (772)
Q Consensus 579 ~~~~~~~~~lL~~ld~~~---------~----~~~v~vi~aTn~ 609 (772)
. .....+++++.++... . ....+||+|||.
T Consensus 65 ~-~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 65 Y-NYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred c-chHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 1 1235666777766532 1 123678888883
No 461
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.99 E-value=1.6e-05 Score=85.16 Aligned_cols=80 Identities=16% Similarity=0.183 Sum_probs=58.6
Q ss_pred cccCcHHHHHHHHHHHHcccCChhHHHHhCCC-CCceEEEECCCCCcHHHHHHHHHHHhCC-------eEEEEec----h
Q 044198 190 DVGGVRKQLGQIREVVELPLRHPQIFKALGVK-PPKGILLHGPPGTGKTLLARAIANETGC-------YFLCING----P 257 (772)
Q Consensus 190 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~vLL~GppGtGKT~Lar~la~~l~~-------~~~~v~~----~ 257 (772)
++.|+++.++++-+.+.... .|.. ..+.++|+|||||||||||++|++.++. +++.+.+ +
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~s 123 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEES 123 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCC
Confidence 69999999999887776422 1222 3466899999999999999999999976 7888877 4
Q ss_pred hhhhhcccchHHHHHHHHHH
Q 044198 258 EIMSKMAGESESNLREAFNV 277 (772)
Q Consensus 258 ~~~~~~~g~~~~~l~~~f~~ 277 (772)
.+.....+-.....+..|.+
T Consensus 124 p~~e~Pl~l~p~~~r~~~~~ 143 (361)
T smart00763 124 PMHEDPLHLFPDELREDLED 143 (361)
T ss_pred CCccCCcccCCHHHHHHHHH
Confidence 44444445555666666643
No 462
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=97.99 E-value=5.3e-06 Score=65.59 Aligned_cols=35 Identities=34% Similarity=0.613 Sum_probs=32.4
Q ss_pred ccccHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHh
Q 044198 707 AEIKKEHFEESMKYARRSVSDSDVRKYQAFANTLQ 741 (772)
Q Consensus 707 ~~i~~~~~~~al~~~~~s~~~~~~~~y~~~~~~~~ 741 (772)
++|+.+||++||++++||++++++++|++|.++|+
T Consensus 28 p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 28 PPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 47999999999999999999999999999999985
No 463
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.98 E-value=4e-05 Score=79.53 Aligned_cols=162 Identities=25% Similarity=0.391 Sum_probs=101.0
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHH---HhCCeEE--EEechhhh--
Q 044198 188 YEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIAN---ETGCYFL--CINGPEIM-- 260 (772)
Q Consensus 188 ~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~---~l~~~~~--~v~~~~~~-- 260 (772)
+..+.|+.++-+.+.+++.....+ .....|++.||.|+|||++....-. +.+-+++ .+||.-..
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk 93 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDK 93 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhH
Confidence 344678888888888888754322 3466799999999999997654433 4566654 44542111
Q ss_pred -----------------hhcccchHHHHHHHHHHHHHc-----CCceEEeccccccccCCCCCchhhHHHHHHHHHHHhh
Q 044198 261 -----------------SKMAGESESNLREAFNVAEKN-----APSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMD 318 (772)
Q Consensus 261 -----------------~~~~g~~~~~l~~~f~~a~~~-----~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld 318 (772)
.+..|.....+..+++..+.. .+.|.++||+|..++... ..-|.+++|
T Consensus 94 ~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~r----------QtllYnlfD 163 (408)
T KOG2228|consen 94 IALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSR----------QTLLYNLFD 163 (408)
T ss_pred HHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchh----------hHHHHHHHH
Confidence 122334444555555554442 234566789998876422 133566666
Q ss_pred ccc-ccCceEEEEeeCCCCCC---ChhhhccCCceeE-EEeCCC-CHHHHHHHHHHHh
Q 044198 319 GMK-SRAHVMVIGATNRPNSI---DPALRRSGRFDKE-IDIGVP-DEVGRLEVLRIHT 370 (772)
Q Consensus 319 ~~~-~~~~v~vI~atn~~~~l---d~al~r~gRf~~~-i~i~~p-~~~~r~~Il~~~~ 370 (772)
-.+ .+.++.+||.|.+.+.+ ....++ ||.+. |.+.++ ...+..++++..+
T Consensus 164 isqs~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 164 ISQSARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHhhcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 433 46789999999887644 456666 99877 555544 4566666666554
No 464
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.96 E-value=4.1e-05 Score=77.44 Aligned_cols=78 Identities=19% Similarity=0.377 Sum_probs=50.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh--------cc---------------cchHHHHH
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSK--------MA---------------GESESNLR 272 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~--------~~---------------g~~~~~l~ 272 (772)
|+....-++|+||||||||+++..++... +...++++...+... .. .+....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 56666679999999999999999988644 556777776431100 00 01111233
Q ss_pred HHHHHHHHcCCceEEecccccccc
Q 044198 273 EAFNVAEKNAPSIIFIDEIDSIAP 296 (772)
Q Consensus 273 ~~f~~a~~~~p~il~iDEid~l~~ 296 (772)
.+...+....+.+++||-+..+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 444445555788999999998764
No 465
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.95 E-value=1.3e-05 Score=82.66 Aligned_cols=157 Identities=18% Similarity=0.180 Sum_probs=96.9
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE------EEEec
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYF------LCING 256 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~------~~v~~ 256 (772)
..+-...++.+.++....+.++...+ .-.+.|+|||||+|||+-..+.|..+..+. ...+.
T Consensus 35 yrP~~l~dv~~~~ei~st~~~~~~~~-------------~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelna 101 (360)
T KOG0990|consen 35 YRPPFLGIVIKQEPIWSTENRYSGMP-------------GLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNA 101 (360)
T ss_pred CCCchhhhHhcCCchhhHHHHhccCC-------------CCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhc
Confidence 34455667777777777777664432 123899999999999999999999875531 11222
Q ss_pred hhhhhhcccchHHHHHHHHHHHHH-------cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEE
Q 044198 257 PEIMSKMAGESESNLREAFNVAEK-------NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVI 329 (772)
Q Consensus 257 ~~~~~~~~g~~~~~l~~~f~~a~~-------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI 329 (772)
++-.+ . .....-...|+.+.. ..+..+++||.|.+.. ...++|....+.+.. ++.++
T Consensus 102 Sd~rg--i-d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~-----------~AQnALRRviek~t~--n~rF~ 165 (360)
T KOG0990|consen 102 SDDRG--I-DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR-----------DAQNALRRVIEKYTA--NTRFA 165 (360)
T ss_pred cCccC--C-cchHHHHHHHHhhccceeccccCceeEEEecchhHhhH-----------HHHHHHHHHHHHhcc--ceEEE
Confidence 21111 1 111222234444432 2456899999998753 233556665555544 45555
Q ss_pred EeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhc
Q 044198 330 GATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTK 371 (772)
Q Consensus 330 ~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~ 371 (772)
..+|++..+.|++++ ||.+ +.+.+.+...-...+..++.
T Consensus 166 ii~n~~~ki~pa~qs--Rctr-frf~pl~~~~~~~r~shi~e 204 (360)
T KOG0990|consen 166 TISNPPQKIHPAQQS--RCTR-FRFAPLTMAQQTERQSHIRE 204 (360)
T ss_pred EeccChhhcCchhhc--cccc-CCCCCCChhhhhhHHHHHHh
Confidence 678999999999988 7766 55555565555555555543
No 466
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.95 E-value=0.00024 Score=72.20 Aligned_cols=27 Identities=59% Similarity=0.931 Sum_probs=24.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETG 248 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~ 248 (772)
..+.+||.||||||||.||-+++.++|
T Consensus 63 aGravLlaGppgtGKTAlAlaisqELG 89 (456)
T KOG1942|consen 63 AGRAVLLAGPPGTGKTALALAISQELG 89 (456)
T ss_pred cCcEEEEecCCCCchhHHHHHHHHHhC
Confidence 367899999999999999999999885
No 467
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.92 E-value=5.1e-05 Score=86.18 Aligned_cols=145 Identities=25% Similarity=0.324 Sum_probs=85.9
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhccc
Q 044198 189 EDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKMAG 265 (772)
Q Consensus 189 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~~g 265 (772)
.++.|....++.+.+.+... .....+++|+|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 139 ~~lig~s~~~~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~- 206 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKI-----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL- 206 (445)
T ss_pred cceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH-
Confidence 34666666666666555321 1234579999999999999999998865 35799999976532110
Q ss_pred chHHHHHHHHHH---------------HHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc---------
Q 044198 266 ESESNLREAFNV---------------AEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK--------- 321 (772)
Q Consensus 266 ~~~~~l~~~f~~---------------a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~--------- 321 (772)
-..+|.. .......+|||||++.+.+ .+...|+..++...
T Consensus 207 -----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~-----------~~q~~l~~~l~~~~~~~~~~~~~ 270 (445)
T TIGR02915 207 -----ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPL-----------NLQAKLLRFLQERVIERLGGREE 270 (445)
T ss_pred -----HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCH-----------HHHHHHHHHHhhCeEEeCCCCce
Confidence 0111110 1112346899999998853 23355555554321
Q ss_pred ccCceEEEEeeCCC-------CCCChhhhccCCceeEEEeCCCCHHHHHH
Q 044198 322 SRAHVMVIGATNRP-------NSIDPALRRSGRFDKEIDIGVPDEVGRLE 364 (772)
Q Consensus 322 ~~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~i~~p~~~~r~~ 364 (772)
...++.+|++|+.. ..+.+.|.. |+.. +.+..|...+|.+
T Consensus 271 ~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~-~~i~lPpLr~R~~ 317 (445)
T TIGR02915 271 IPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIAE-ISITIPPLRSRDG 317 (445)
T ss_pred eeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhcc-ceecCCCchhchh
Confidence 12357888888765 233343432 3332 5566676666654
No 468
>PF05729 NACHT: NACHT domain
Probab=97.91 E-value=4.7e-05 Score=73.45 Aligned_cols=141 Identities=16% Similarity=0.233 Sum_probs=73.5
Q ss_pred ceEEeCCCCCchhHHHHHHHHHhCC--------cE-EEEecccchhc------------ccccchHHHHHHH-HHHHhCC
Q 044198 498 GVLFYGPPGCGKTLLAKAIANECQA--------NF-ISIKGPELLTM------------WFGESEANVRDVF-DKARQSA 555 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~~~--------~~-i~v~~~~l~~~------------~vg~se~~i~~vf-~~a~~~~ 555 (772)
-++++|+||+|||++++.++..+.. .+ +.+...+.-.. ........+...+ .......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 3789999999999999999977621 11 22222222110 1111111222222 2233455
Q ss_pred CeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcC-CCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCH
Q 044198 556 PCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDG-LSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDE 634 (772)
Q Consensus 556 p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~-~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~ 634 (772)
+.+++||-+|.+...... ....+....+...+.. ....-+++|.+.+.....+...+.. . ..+.+++.+.
T Consensus 82 ~~llilDglDE~~~~~~~-----~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~---~-~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-----QERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQ---A-QILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh-----hHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCC---C-cEEEECCCCH
Confidence 678999999999653221 0112223333333333 2223333333222222122222221 1 5788889999
Q ss_pred HHHHHHHHHhhcc
Q 044198 635 HSRLQIFKSCLRK 647 (772)
Q Consensus 635 ~~r~~Il~~~~~~ 647 (772)
+++.++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988754
No 469
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.91 E-value=2.8e-05 Score=82.48 Aligned_cols=72 Identities=38% Similarity=0.531 Sum_probs=49.2
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CeEEEEechhhhhhccc
Q 044198 188 YEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG--CYFLCINGPEIMSKMAG 265 (772)
Q Consensus 188 ~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~--~~~~~v~~~~~~~~~~g 265 (772)
.+.+.|+.++.+..--.+++-.. +--..+++||.||||||||.||-++|+++| .||+.++++++.+....
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~--------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~k 94 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKE--------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVK 94 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHT--------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-
T ss_pred cccccChHHHHHHHHHHHHHHhc--------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccC
Confidence 35788998887776544443111 112468899999999999999999999997 68999999999876554
Q ss_pred ch
Q 044198 266 ES 267 (772)
Q Consensus 266 ~~ 267 (772)
.+
T Consensus 95 KT 96 (398)
T PF06068_consen 95 KT 96 (398)
T ss_dssp HH
T ss_pred ch
Confidence 33
No 470
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.91 E-value=6e-06 Score=86.64 Aligned_cols=136 Identities=26% Similarity=0.430 Sum_probs=75.7
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhC-CcE--EEEecccchhcccccchHHHHHHHHH-----------HHhCCCeEEE
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQ-ANF--ISIKGPELLTMWFGESEANVRDVFDK-----------ARQSAPCVLF 560 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~-~~~--i~v~~~~l~~~~vg~se~~i~~vf~~-----------a~~~~p~ilf 560 (772)
...++||+||+|||||++++..-..+. ..+ ..++.+... +...+..+.+. +.....+|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 356799999999999999988765543 222 233332210 11222222111 1122347999
Q ss_pred EcCchhhhhccCCCCCCCCchhHHHHHHHHH-hcCC--CC--------CCcEEEEeecCCCC---CCCccccCCCCcccc
Q 044198 561 FDELDSIAIQRGSSVGDGGGVDRIVNQLLTE-MDGL--SA--------KKTVFVIGATNRPD---MIDPALLRPGRLDQL 626 (772)
Q Consensus 561 iDEid~l~~~r~~~~~~~~~~~~~~~~lL~~-ld~~--~~--------~~~v~vi~aTn~~~---~ld~allrpgRf~~~ 626 (772)
+||+..-.... .++...+ +||++ ||.. .. -.++.++||+|.+. .+.+.++| .|. +
T Consensus 106 iDDlN~p~~d~-------ygtq~~i-ElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i 174 (272)
T PF12775_consen 106 IDDLNMPQPDK-------YGTQPPI-ELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-I 174 (272)
T ss_dssp EETTT-S---T-------TS--HHH-HHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-E
T ss_pred ecccCCCCCCC-------CCCcCHH-HHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-E
Confidence 99997654322 2234444 44444 4431 11 14678889888543 46778886 665 8
Q ss_pred ccCCCCCHHHHHHHHHHhhcc
Q 044198 627 IYIPLPDEHSRLQIFKSCLRK 647 (772)
Q Consensus 627 i~~~~p~~~~r~~Il~~~~~~ 647 (772)
+.++.|+.++...|+...+..
T Consensus 175 ~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 175 LNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp EE----TCCHHHHHHHHHHHH
T ss_pred EEecCCChHHHHHHHHHHHhh
Confidence 999999999999998877753
No 471
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.90 E-value=1.8e-05 Score=93.55 Aligned_cols=129 Identities=19% Similarity=0.165 Sum_probs=76.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCe-------EEEEechhhhh-h--cccchHHHHHHHHHHHHHcCCceEEeccc
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETGCY-------FLCINGPEIMS-K--MAGESESNLREAFNVAEKNAPSIIFIDEI 291 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~~~-------~~~v~~~~~~~-~--~~g~~~~~l~~~f~~a~~~~p~il~iDEi 291 (772)
...+|||+|+||||||++|+++++..+.. +..+.+..... . ..|++....+ .+.. ....+++|||+
T Consensus 491 gdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~G-aLvl---AdgGtL~IDEi 566 (915)
T PTZ00111 491 GIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPG-AVVL---ANGGVCCIDEL 566 (915)
T ss_pred CCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCC-cEEE---cCCCeEEecch
Confidence 34479999999999999999999865422 22222211110 0 0010000000 0111 12359999999
Q ss_pred cccccCCCCCchhhHHHHHHHHHHHhhccc-----------ccCceEEEEeeCCC-------------CCCChhhhccCC
Q 044198 292 DSIAPKREKTHGEVEKRIVSQLLTLMDGMK-----------SRAHVMVIGATNRP-------------NSIDPALRRSGR 347 (772)
Q Consensus 292 d~l~~~~~~~~~~~~~~v~~~L~~lld~~~-----------~~~~v~vI~atn~~-------------~~ld~al~r~gR 347 (772)
+.+.+ .....|++.|+... -..++.||||+||. -.|++++.+ |
T Consensus 567 dkms~-----------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--R 633 (915)
T PTZ00111 567 DKCHN-----------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--R 633 (915)
T ss_pred hhCCH-----------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--h
Confidence 98743 23456777775432 12568999999985 156789988 9
Q ss_pred ceeEE-EeCCCCHHHHHHHHH
Q 044198 348 FDKEI-DIGVPDEVGRLEVLR 367 (772)
Q Consensus 348 f~~~i-~i~~p~~~~r~~Il~ 367 (772)
||..+ -++.|+++.=..|-.
T Consensus 634 FDLIf~l~D~~d~~~D~~lA~ 654 (915)
T PTZ00111 634 FDLIYLVLDHIDQDTDQLISL 654 (915)
T ss_pred hcEEEEecCCCChHHHHHHHH
Confidence 98875 455667665444433
No 472
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.90 E-value=0.0001 Score=84.22 Aligned_cols=145 Identities=22% Similarity=0.363 Sum_probs=85.7
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcc
Q 044198 188 YEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKMA 264 (772)
Q Consensus 188 ~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~~ 264 (772)
+.++.|-...+..+.+.+... .....+++|+|++|||||++|+++.... +.+|+.++|..+....
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~-----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~- 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRL-----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL- 204 (469)
T ss_pred cccceecCHHHHHHHHHHHHH-----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH-
Confidence 345667666666665555421 1235579999999999999999999876 4689999997653211
Q ss_pred cchHHHHHHHHHH---------------HHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc--------
Q 044198 265 GESESNLREAFNV---------------AEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK-------- 321 (772)
Q Consensus 265 g~~~~~l~~~f~~---------------a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~-------- 321 (772)
.-..+|.. ........|||||++.+.+ .....|+..++...
T Consensus 205 -----~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~-----------~~q~~L~~~l~~~~~~~~~~~~ 268 (469)
T PRK10923 205 -----IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL-----------DVQTRLLRVLADGQFYRVGGYA 268 (469)
T ss_pred -----HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH-----------HHHHHHHHHHhcCcEEeCCCCC
Confidence 01111111 1112245899999998853 23345555554321
Q ss_pred -ccCceEEEEeeCCC-------CCCChhhhccCCceeEEEeCCCCHHHHH
Q 044198 322 -SRAHVMVIGATNRP-------NSIDPALRRSGRFDKEIDIGVPDEVGRL 363 (772)
Q Consensus 322 -~~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~i~~p~~~~r~ 363 (772)
...++.+|++|+.. ..+.+.|.. ||.. +.+..|...+|.
T Consensus 269 ~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~-~~i~~PpLreR~ 315 (469)
T PRK10923 269 PVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNV-IRVHLPPLRERR 315 (469)
T ss_pred eEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhcc-eeecCCCcccch
Confidence 12356888888754 234445544 5532 455555555554
No 473
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.85 E-value=5.6e-05 Score=76.42 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=67.7
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhc----ccc-------------------cchHHHH
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM----WFG-------------------ESEANVR 545 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~----~vg-------------------~se~~i~ 545 (772)
|++...-++++||||||||+++..++... +.+.+.++..++... ... +....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 66777779999999999999999888543 556777777541100 000 0011244
Q ss_pred HHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCC
Q 044198 546 DVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRP 610 (772)
Q Consensus 546 ~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 610 (772)
.+.+.+....+++|+||-+.++......+ +.....+.+..++..|..+....++.++++....
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~~--~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~ 150 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELSD--DRISRNRELARQLTLLLSLARKKNLAVVITNQVY 150 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhCC--ccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcccE
Confidence 44444555578999999999986432111 1111122333344445444445566777765433
No 474
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=6.7e-05 Score=79.52 Aligned_cols=123 Identities=16% Similarity=0.222 Sum_probs=87.6
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCC-------------cEEEEe--cccchhcccccchHHHHHHHHHHHh-----CC
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQA-------------NFISIK--GPELLTMWFGESEANVRDVFDKARQ-----SA 555 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~-------------~~i~v~--~~~l~~~~vg~se~~i~~vf~~a~~-----~~ 555 (772)
.+..||+|+.|.||+++|+.++..+-+ +++.++ +.. -+-..++++.+.... +.
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-------i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-------LSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-------CCHHHHHHHHHHhccCCcccCC
Confidence 455889999999999999999988622 122232 111 112356665554421 34
Q ss_pred CeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHH
Q 044198 556 PCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEH 635 (772)
Q Consensus 556 p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~ 635 (772)
..|++||++|.+ +....|.||..|+.. ...+++|..|+.++.|-|.+.+ |+. ++.|++|+.+
T Consensus 91 ~KvvII~~~e~m-------------~~~a~NaLLK~LEEP--p~~t~~il~~~~~~kll~TI~S--Rc~-~~~f~~l~~~ 152 (299)
T PRK07132 91 KKILIIKNIEKT-------------SNSLLNALLKTIEEP--PKDTYFLLTTKNINKVLPTIVS--RCQ-VFNVKEPDQQ 152 (299)
T ss_pred ceEEEEeccccc-------------CHHHHHHHHHHhhCC--CCCeEEEEEeCChHhChHHHHh--CeE-EEECCCCCHH
Confidence 579999999877 355788999999963 4566677777788888888887 886 8999999988
Q ss_pred HHHHHHHH
Q 044198 636 SRLQIFKS 643 (772)
Q Consensus 636 ~r~~Il~~ 643 (772)
+..+.+..
T Consensus 153 ~l~~~l~~ 160 (299)
T PRK07132 153 KILAKLLS 160 (299)
T ss_pred HHHHHHHH
Confidence 87776664
No 475
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.81 E-value=5.2e-05 Score=77.37 Aligned_cols=65 Identities=25% Similarity=0.355 Sum_probs=52.7
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhh
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSI 567 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l 567 (772)
..+-.++||+|||||.+++.+|..+|.+++.+++++.++ ...+.++|.-+.+.. +-+.|||++.+
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~G-aW~cfdefnrl 96 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQSG-AWLCFDEFNRL 96 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHHT--EEEEETCCCS
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhcC-chhhhhhhhhh
Confidence 456789999999999999999999999999999998543 467888887766654 68999999988
No 476
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.81 E-value=0.00037 Score=74.03 Aligned_cols=168 Identities=14% Similarity=0.200 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCe---EEEEechh------hh---
Q 044198 195 RKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANE--TGCY---FLCINGPE------IM--- 260 (772)
Q Consensus 195 ~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~--l~~~---~~~v~~~~------~~--- 260 (772)
++++++|.+.+.... ...+-|.|+|++|+|||+||+.++.. .... .+.++... +.
T Consensus 2 e~~~~~l~~~L~~~~-----------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNS-----------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHTTT-----------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-----------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 455666666554311 33556999999999999999999977 4332 23333321 11
Q ss_pred -hh---c-----ccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEe
Q 044198 261 -SK---M-----AGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGA 331 (772)
Q Consensus 261 -~~---~-----~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~a 331 (772)
.. . .......+...+...-...++++++|+++... ....+...+... ..+..+|.|
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~--~~~~kilvT 135 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE-------------DLEELREPLPSF--SSGSKILVT 135 (287)
T ss_dssp HHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH-------------HH-------HCH--HSS-EEEEE
T ss_pred cccccccccccccccccccccccchhhhccccceeeeeeecccc-------------cccccccccccc--ccccccccc
Confidence 11 1 01112223334444444558999999986431 112222222221 123455556
Q ss_pred eCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCc----ccccchhHHHHHhcCCc
Q 044198 332 TNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKL----AEDVNLETVARETHGFV 392 (772)
Q Consensus 332 tn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l----~~~~~l~~la~~t~g~~ 392 (772)
|.... +-.... .-...++++..+.++-.+++......... ........+++.+.|..
T Consensus 136 TR~~~-v~~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 196 (287)
T PF00931_consen 136 TRDRS-VAGSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLP 196 (287)
T ss_dssp ESCGG-GGTTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-H
T ss_pred ccccc-cccccc---cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 65432 222221 12567899999999999999877544331 11123456777776654
No 477
>PF03152 UFD1: Ubiquitin fusion degradation protein UFD1; InterPro: IPR004854 Post-translational ubiquitin-protein conjugates are recognised for degradation by the ubiquitin fusion degradation (UFD) pathway. Several proteins involved in this pathway have been identified []. This family includes UFD1, a 40kDa protein that is essential for vegetative cell viability []. The human UFD1 gene is expressed at high levels during embryogenesis, especially in the eyes and in the inner ear primordia and is thought to be important in the determination of ectoderm-derived structures, including neural crest cells. In addition, this gene is deleted in the CATCH-22 (cardiac defects, abnormal facies, thymic hypoplasia, cleft palate and hypocalcaemia with deletions on chromosome 22) syndrome. This clinical syndrome is associated with a variety of developmental defects, all characterised by microdeletions on 22q11.2. Two such developmental defects are the DiGeorge syndrome OMIM:188400, and the velo-cardio- facial syndrome OMIM:145410. Several of the abnormalities associated with these conditions are thought to be due to defective neural crest cell differentiation []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1ZC1_A 2YUJ_A.
Probab=97.81 E-value=0.00042 Score=66.89 Aligned_cols=133 Identities=20% Similarity=0.277 Sum_probs=87.8
Q ss_pred CcEEEECHhhHhhcC---CCCCCeEEEeec-CcceEEEEEEeCCCCCCCeEEEcHHHHhhcCCCCCCeEEEEEccCCCCC
Q 044198 22 NSVVGLHPLTMEKLD---IFKYDTILIKGK-RRRNTICTAVDDDTCDASKIRMNKVVRSNLRLRLGDLVSVKICNDVVNA 97 (772)
Q Consensus 22 ~~~v~~~~~~~~~l~---~~~g~~v~i~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~v~v~~~~~~~~~ 97 (772)
.++|.|.|+.|.+|. +.--=.-+|+.. +.+.+.|-|.- -.-++|.|.|+.-+++++++..|+.|.|+. ..+|.+
T Consensus 25 gdKiiLP~s~L~~L~~~~~~~P~~F~i~n~~~~~~th~GVlE-FsA~eG~i~lP~wmm~~L~l~~g~~V~v~~-~~LPkg 102 (176)
T PF03152_consen 25 GDKIILPPSALDELSRLNIPYPMLFEISNPDNGKRTHCGVLE-FSAEEGTIYLPPWMMQNLGLQEGDIVRVEY-VSLPKG 102 (176)
T ss_dssp TTEEEE-HHHHHHHHHTT--SS-EEEEEETTTTEEEEEEEEE-E--CTTEEEE-CHHHHHHT--TTEEEEEEE-EE----
T ss_pred CCeEEcCHHHHHHHHhccCCCCEEEEEecCCCCcEEEEEEEE-eEcCCCeEEeCccHHhhcCCCCCCEEEEEE-eECCCC
Confidence 669999999999884 322235566544 23345444441 122568999999999999999999999994 679999
Q ss_pred ceeEeecccccccCcchhhHHHHHHHhhhcCCcCccCCcEEEEecCceeEEEEEEEecCCce
Q 044198 98 TKMHVLPLHDTIEGITGNLFDVYLKPYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGEY 159 (772)
Q Consensus 98 ~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~ 159 (772)
+.+.+.|.+.....++ -.+..|..++. .+-.++.||+|.+..+++...|.|++++|...
T Consensus 103 t~vkLqP~~~~F~~i~--n~KavLE~~Lr-~ystLT~Gd~I~i~~~~~~y~l~V~e~kP~~a 161 (176)
T PF03152_consen 103 TFVKLQPQSSDFLDIS--NPKAVLERALR-NYSTLTKGDTISIEYNNKTYELDVVEVKPENA 161 (176)
T ss_dssp SEEEEEESCHHHHCSS---HHHHHHHHHC-C-SEEETTSEEEEECTTEEEEEEEEEECSSSC
T ss_pred CEEEEeECCCcccccc--chHHHHHhhcc-cCceeecCCEEEEEeCCEEEEEEEEEEcCCCE
Confidence 9999999875322232 23445555553 35669999999999888889999999999764
No 478
>PRK06851 hypothetical protein; Provisional
Probab=97.80 E-value=0.00059 Score=74.01 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=27.0
Q ss_pred CceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecc
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGP 530 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~ 530 (772)
+-++|.|+||||||++++.++.++ |.......++
T Consensus 215 ~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~ 251 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCG 251 (367)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 448999999999999999999876 5555555554
No 479
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.79 E-value=2.1e-05 Score=85.17 Aligned_cols=165 Identities=21% Similarity=0.268 Sum_probs=84.9
Q ss_pred ccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEeccc-----chhcccc
Q 044198 464 IGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE-----LLTMWFG 538 (772)
Q Consensus 464 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~-----l~~~~vg 538 (772)
|.|.+.+|..+.-.+-........ .....+..-++||+|.||||||.|.+.++...-.. +.+++.. |.....-
T Consensus 26 i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~~~s~~gLta~~~~ 103 (331)
T PF00493_consen 26 IYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGKGSSAAGLTASVSR 103 (331)
T ss_dssp TTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSE-EEEECCGSTCCCCCEEECC
T ss_pred CcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCce-EEECCCCcccCCccceecc
Confidence 567888887765333221111000 00012345579999999999999999887665333 3333322 1110000
Q ss_pred ---cchHHH-HHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC----C-------CCcEEE
Q 044198 539 ---ESEANV-RDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS----A-------KKTVFV 603 (772)
Q Consensus 539 ---~se~~i-~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~----~-------~~~v~v 603 (772)
..+..+ ...+-.|.. .|.+|||+|.+- +...+.|+..|+... . +.+.-|
T Consensus 104 d~~~~~~~leaGalvlad~---GiccIDe~dk~~-------------~~~~~~l~eaMEqq~isi~kagi~~~l~ar~sv 167 (331)
T PF00493_consen 104 DPVTGEWVLEAGALVLADG---GICCIDEFDKMK-------------EDDRDALHEAMEQQTISIAKAGIVTTLNARCSV 167 (331)
T ss_dssp CGGTSSECEEE-HHHHCTT---SEEEECTTTT---------------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EE
T ss_pred ccccceeEEeCCchhcccC---ceeeeccccccc-------------chHHHHHHHHHHcCeeccchhhhcccccchhhh
Confidence 001011 112333433 499999999983 234667888888641 1 246789
Q ss_pred EeecCCCC-------------CCCccccCCCCccccccC-CCCCHHHHHHHHHHhhccC
Q 044198 604 IGATNRPD-------------MIDPALLRPGRLDQLIYI-PLPDEHSRLQIFKSCLRKS 648 (772)
Q Consensus 604 i~aTn~~~-------------~ld~allrpgRf~~~i~~-~~p~~~~r~~Il~~~~~~~ 648 (772)
+||+|... .+++.+++ |||.++.+ ..|+.+.-..|.+..++..
T Consensus 168 laa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 168 LAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp EEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred HHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEecc
Confidence 99998654 46788998 99977665 5778776667777666443
No 480
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.78 E-value=0.00018 Score=76.74 Aligned_cols=115 Identities=26% Similarity=0.348 Sum_probs=67.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh----------------hcccchHHHHHHHHHHHH
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMS----------------KMAGESESNLREAFNVAE 279 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~----------------~~~g~~~~~l~~~f~~a~ 279 (772)
|++...-++|+||||||||+|+..++... +...++++...... ..+...++.+..+.+..+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 45666679999999999999988776543 55666666533211 011122333444434445
Q ss_pred HcCCceEEeccccccccCCCCC------chhhHHHHHHHHHHHhhcccccCceEEEEeeC
Q 044198 280 KNAPSIIFIDEIDSIAPKREKT------HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATN 333 (772)
Q Consensus 280 ~~~p~il~iDEid~l~~~~~~~------~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn 333 (772)
...+.+++||-+..+.+...-. ......|...+++..+...-...++.+|.+..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 5678999999999987642111 11123344444444444444456677776643
No 481
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.78 E-value=4.5e-05 Score=83.02 Aligned_cols=141 Identities=21% Similarity=0.366 Sum_probs=82.0
Q ss_pred CCCCCceEEeCCCCCchhHHHHHHHHHhCC-cEEEEecccchh-------cccccchHHHHHHHHHHHhCCCeEEEEcCc
Q 044198 493 MSPSRGVLFYGPPGCGKTLLAKAIANECQA-NFISIKGPELLT-------MWFGESEANVRDVFDKARQSAPCVLFFDEL 564 (772)
Q Consensus 493 ~~~~~~iLl~GppGtGKT~la~alA~~~~~-~~i~v~~~~l~~-------~~vg~se~~i~~vf~~a~~~~p~ilfiDEi 564 (772)
..+++|+.||||+|+|||+|+-+....+.. .-.++.-.+++- .+.|. ...+..+-+...+. ..+|.|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~-~~~l~~va~~l~~~-~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQ-DDPLPQVADELAKE-SRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCC-CccHHHHHHHHHhc-CCEEEEeee
Confidence 457899999999999999999999877643 112222222221 11111 11233333322222 249999999
Q ss_pred hhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCC-CCCCCccccCCCCccccccCCCCCHHHHHHHHHH
Q 044198 565 DSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNR-PDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKS 643 (772)
Q Consensus 565 d~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~-~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~ 643 (772)
+-- +- +.--++..|+..|= ..++++|+|+|+ |+.|=+ +.+.+..+.| -.++++.
T Consensus 137 ~V~---------Di-aDAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~-----~gl~r~~Flp------~I~~l~~ 191 (362)
T PF03969_consen 137 QVT---------DI-ADAMILKRLFEALF----KRGVVLVATSNRPPEDLYK-----NGLQRERFLP------FIDLLKR 191 (362)
T ss_pred ecc---------ch-hHHHHHHHHHHHHH----HCCCEEEecCCCChHHHcC-----CcccHHHHHH------HHHHHHh
Confidence 642 11 12345666776664 357899999998 344333 2222222222 2567777
Q ss_pred hhccCCCCCcccHHHHH
Q 044198 644 CLRKSPVSKDIDLKAIA 660 (772)
Q Consensus 644 ~~~~~~~~~~~~~~~la 660 (772)
++.-..++++.|+....
T Consensus 192 ~~~vv~ld~~~DyR~~~ 208 (362)
T PF03969_consen 192 RCDVVELDGGVDYRRRG 208 (362)
T ss_pred ceEEEEecCCCchhhhc
Confidence 88777777777776544
No 482
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.77 E-value=0.00016 Score=67.91 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=25.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET 247 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l 247 (772)
.+.++..++|+||+|||||+|.+++|...
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 34566679999999999999999999865
No 483
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.76 E-value=2.7e-05 Score=92.70 Aligned_cols=164 Identities=22% Similarity=0.256 Sum_probs=104.6
Q ss_pred ceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhccc-----cc--chHHHHHHHH--HHH-h-CCC-eEEEEcCch
Q 044198 498 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF-----GE--SEANVRDVFD--KAR-Q-SAP-CVLFFDELD 565 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~v-----g~--se~~i~~vf~--~a~-~-~~p-~ilfiDEid 565 (772)
.++++||||.|||+.+.++|.++++.++..+.++.-+++. |+ +...+..-|. .++ . ... -||++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 3799999999999999999999999999999987765542 22 1223444440 000 0 112 389999999
Q ss_pred hhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhh
Q 044198 566 SIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCL 645 (772)
Q Consensus 566 ~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~ 645 (772)
.+... +.+ .+.++-.... ....-+|+++|....-...-+. |-...++|+.|+.+++..-+...+
T Consensus 439 ~~~~~------dRg----~v~~l~~l~~----ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~ 502 (871)
T KOG1968|consen 439 GMFGE------DRG----GVSKLSSLCK----KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSIC 502 (871)
T ss_pred cccch------hhh----hHHHHHHHHH----hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhh
Confidence 98641 111 2333333332 2234578888876665553332 444679999999988776665555
Q ss_pred ccCC-CCCcccHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 044198 646 RKSP-VSKDIDLKAIAKYTHGFSGADITEICQRACKC 681 (772)
Q Consensus 646 ~~~~-~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~ 681 (772)
.... .-.+-.++.+.+. +++||++++......
T Consensus 503 ~se~~ki~~~~l~~~s~~----~~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 503 KSEGIKISDDVLEEISKL----SGGDIRQIIMQLQFW 535 (871)
T ss_pred cccceecCcHHHHHHHHh----cccCHHHHHHHHhhh
Confidence 3332 2244557777764 478999988766655
No 484
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.75 E-value=2.3e-06 Score=98.48 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=29.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCC--eEEEEechh
Q 044198 220 VKPPKGILLHGPPGTGKTLLARAIANETGC--YFLCINGPE 258 (772)
Q Consensus 220 ~~~~~~vLL~GppGtGKT~Lar~la~~l~~--~~~~v~~~~ 258 (772)
+.++.-+.|.||+|+|||||++.+++.+.. --+.+++.+
T Consensus 27 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~ 67 (501)
T PRK10762 27 VYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKE 67 (501)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 345666999999999999999999997632 235556544
No 485
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.74 E-value=0.00041 Score=87.81 Aligned_cols=154 Identities=21% Similarity=0.300 Sum_probs=88.0
Q ss_pred ccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE---EEEechhhh---
Q 044198 187 GYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYF---LCINGPEIM--- 260 (772)
Q Consensus 187 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~---~~v~~~~~~--- 260 (772)
.++++.|++..++++.+++... ....+-|.|+|++|+||||||+++++.+...| +.++...+.
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~-----------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~ 250 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE-----------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM 250 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc-----------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch
Confidence 4677999999999998887542 23356699999999999999999988774432 222210000
Q ss_pred hhcc-------c----chHHHHHH-------------HHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHH
Q 044198 261 SKMA-------G----ESESNLRE-------------AFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTL 316 (772)
Q Consensus 261 ~~~~-------g----~~~~~l~~-------------~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~l 316 (772)
..+. . .....+.. .++..-...+.+|++|+++.. ...+.|...
T Consensus 251 ~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-------------~~l~~L~~~ 317 (1153)
T PLN03210 251 EIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-------------DVLDALAGQ 317 (1153)
T ss_pred hhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-------------HHHHHHHhh
Confidence 0000 0 00000111 112222345678899998632 122333333
Q ss_pred hhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhc
Q 044198 317 MDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTK 371 (772)
Q Consensus 317 ld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~ 371 (772)
.+... .+ -.||.||... .+.+....++.++++.|+.++..+++..+.-
T Consensus 318 ~~~~~-~G-srIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 318 TQWFG-SG-SRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAF 365 (1153)
T ss_pred CccCC-CC-cEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhc
Confidence 22221 22 2344455532 3333234667889999999999999887653
No 486
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.74 E-value=0.00013 Score=77.70 Aligned_cols=120 Identities=22% Similarity=0.255 Sum_probs=75.7
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhc----------------ccccchHHHHHHHHHHH
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM----------------WFGESEANVRDVFDKAR 552 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~----------------~vg~se~~i~~vf~~a~ 552 (772)
|+++.+-++++||||||||+||..++... +.+.+.++..+..+. .....++.+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56777779999999999999988776544 456666655442211 01112334444444456
Q ss_pred hCCCeEEEEcCchhhhhccCCC--CCCC--CchhHHHHHHHHHhcCCCCCCcEEEEeecCCCC
Q 044198 553 QSAPCVLFFDELDSIAIQRGSS--VGDG--GGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPD 611 (772)
Q Consensus 553 ~~~p~ilfiDEid~l~~~r~~~--~~~~--~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 611 (772)
...++++++|-+.++.+...-. .++. +...|.++++|..|.......++.+|++....+
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~ 193 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQIRE 193 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEeccee
Confidence 6778999999999997642111 0111 123466777777777776667777777755433
No 487
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=4.8e-06 Score=96.01 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=29.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCC----eEEEEechhh
Q 044198 220 VKPPKGILLHGPPGTGKTLLARAIANETGC----YFLCINGPEI 259 (772)
Q Consensus 220 ~~~~~~vLL~GppGtGKT~Lar~la~~l~~----~~~~v~~~~~ 259 (772)
+.+..-+.|.||+|+|||||++.|++.+.. --+.+++.++
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 28 VRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 344566999999999999999999997652 2355665443
No 488
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.72 E-value=2.8e-05 Score=74.54 Aligned_cols=132 Identities=19% Similarity=0.258 Sum_probs=82.6
Q ss_pred hhHHHHhCCC--CCceEEEECCCCCcHHHHHHHHHHHhCC--eEEEEechhhhh---hcccchHHHHHHHHHHHHHcCCc
Q 044198 212 PQIFKALGVK--PPKGILLHGPPGTGKTLLARAIANETGC--YFLCINGPEIMS---KMAGESESNLREAFNVAEKNAPS 284 (772)
Q Consensus 212 ~~~~~~~~~~--~~~~vLL~GppGtGKT~Lar~la~~l~~--~~~~v~~~~~~~---~~~g~~~~~l~~~f~~a~~~~p~ 284 (772)
++.++++++. +..-+.|+||+|+||||+.+.|..+... --+.+++.++.. ....-....+..+||+-+- -+.
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rL-L~~ 93 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRL-LPD 93 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccc-ccc
Confidence 4455555444 4444999999999999999999987643 246677666543 2233345566677776542 133
Q ss_pred eEEeccccccccCCCCCchhhHHHHHHHHH-------------HHhhcccccC--------ceEEEEeeCCCCCCChhhh
Q 044198 285 IIFIDEIDSIAPKREKTHGEVEKRIVSQLL-------------TLMDGMKSRA--------HVMVIGATNRPNSIDPALR 343 (772)
Q Consensus 285 il~iDEid~l~~~~~~~~~~~~~~v~~~L~-------------~lld~~~~~~--------~v~vI~atn~~~~ld~al~ 343 (772)
--+.|++...+.-.+....++.+++.+.|. .++.|.+|+. +-.++.|-.|.-++||++.
T Consensus 94 ~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s 173 (223)
T COG2884 94 RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLS 173 (223)
T ss_pred chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHH
Confidence 455677777776666677777777777652 3344555542 2234456666678888765
Q ss_pred c
Q 044198 344 R 344 (772)
Q Consensus 344 r 344 (772)
.
T Consensus 174 ~ 174 (223)
T COG2884 174 W 174 (223)
T ss_pred H
Confidence 4
No 489
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.72 E-value=0.00012 Score=68.44 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=22.4
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC 520 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~ 520 (772)
...+++.|+||+||||+++-++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3458999999999999999999877
No 490
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.71 E-value=0.00088 Score=74.37 Aligned_cols=139 Identities=18% Similarity=0.214 Sum_probs=81.9
Q ss_pred CCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccC
Q 044198 493 MSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRG 572 (772)
Q Consensus 493 ~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~ 572 (772)
..+. -++++||-+|||||+++.+.....-..+.++..|+......- ...-..+..+.......+|||||+.+-.
T Consensus 35 ~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~~--- 108 (398)
T COG1373 35 LRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVPD--- 108 (398)
T ss_pred cCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCchh---
Confidence 3444 789999999999999998888875557777777754432111 2222333333332446999999988731
Q ss_pred CCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHH-------------
Q 044198 573 SSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQ------------- 639 (772)
Q Consensus 573 ~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~------------- 639 (772)
-.+.+..|. |.... ++++.+++...-....+-.-|||.. .+.+.|.+..+...
T Consensus 109 --------W~~~lk~l~---d~~~~--~v~itgsss~ll~~~~~~~L~GR~~-~~~l~PlSF~Efl~~~~~~~~~~~~~~ 174 (398)
T COG1373 109 --------WERALKYLY---DRGNL--DVLITGSSSSLLSKEISESLAGRGK-DLELYPLSFREFLKLKGEEIEPSKLEL 174 (398)
T ss_pred --------HHHHHHHHH---ccccc--eEEEECCchhhhccchhhhcCCCce-eEEECCCCHHHHHhhcccccchhHHHH
Confidence 133333332 32211 4444444443333333444468954 77777888888754
Q ss_pred HHHHhhccCCCC
Q 044198 640 IFKSCLRKSPVS 651 (772)
Q Consensus 640 Il~~~~~~~~~~ 651 (772)
.|+.++...+..
T Consensus 175 ~f~~Yl~~GGfP 186 (398)
T COG1373 175 LFEKYLETGGFP 186 (398)
T ss_pred HHHHHHHhCCCc
Confidence 466666554443
No 491
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.70 E-value=6.4e-05 Score=75.78 Aligned_cols=109 Identities=15% Similarity=0.142 Sum_probs=55.5
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCcEEEEeccc-chhc---------ccccchHHHHHHHHHHH--hCCCeEEEEcC
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE-LLTM---------WFGESEANVRDVFDKAR--QSAPCVLFFDE 563 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~-l~~~---------~vg~se~~i~~vf~~a~--~~~p~ilfiDE 563 (772)
+..+||||+||+|||++|+.++.. .-++...++. .+.. -...+-..+.+.+.... ...+.+||||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 345999999999999999999732 2223322211 0000 00111123333333332 23468999999
Q ss_pred chhhhh------ccCCCC--CCCCchhHHHHHHHHHhcCCCC-CCcEEEEee
Q 044198 564 LDSIAI------QRGSSV--GDGGGVDRIVNQLLTEMDGLSA-KKTVFVIGA 606 (772)
Q Consensus 564 id~l~~------~r~~~~--~~~~~~~~~~~~lL~~ld~~~~-~~~v~vi~a 606 (772)
++.+.. .|.... .+...-.++-+.|+..|..+.+ ..+|++++-
T Consensus 90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tAh 141 (220)
T TIGR01618 90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKESNKNIYATAW 141 (220)
T ss_pred HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 999866 222111 1122233455556655555433 234444443
No 492
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.70 E-value=8e-05 Score=73.37 Aligned_cols=59 Identities=25% Similarity=0.498 Sum_probs=37.9
Q ss_pred ccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe---EEEEechhh
Q 044198 191 VGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY---FLCINGPEI 259 (772)
Q Consensus 191 i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~---~~~v~~~~~ 259 (772)
+.|-+++++++...+. .... ..++.++|+|++|+|||+|++.+...+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~~---------~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQS---------GSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTSS--------------EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHHc---------CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 4688999999988886 2222 335779999999999999999988776433 666666544
No 493
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.69 E-value=0.00037 Score=74.34 Aligned_cols=115 Identities=25% Similarity=0.354 Sum_probs=65.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh----------------hcccchHHHHHHHHHHHH
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMS----------------KMAGESESNLREAFNVAE 279 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~----------------~~~g~~~~~l~~~f~~a~ 279 (772)
|++..+-+.|+||||||||+|+-.++... +...++++...... ..+...++.+..+-...+
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 45556669999999999999999887543 55666776522111 011122233333333345
Q ss_pred HcCCceEEeccccccccCCCCC--ch----hhHHHHHHHHHHHhhcccccCceEEEEeeC
Q 044198 280 KNAPSIIFIDEIDSIAPKREKT--HG----EVEKRIVSQLLTLMDGMKSRAHVMVIGATN 333 (772)
Q Consensus 280 ~~~p~il~iDEid~l~~~~~~~--~~----~~~~~v~~~L~~lld~~~~~~~v~vI~atn 333 (772)
...+.+++||-+..+.+..... .+ ....+.+.+.+..+...-...++.+|.+..
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 5678899999999988642211 00 112344444444444444456677776543
No 494
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.67 E-value=0.00029 Score=89.18 Aligned_cols=156 Identities=18% Similarity=0.330 Sum_probs=88.6
Q ss_pred cccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcE---EEEecc---cc
Q 044198 459 VRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANF---ISIKGP---EL 532 (772)
Q Consensus 459 v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~---i~v~~~---~l 532 (772)
..+++++|.+...+.+...+.. .....+-+.++||+|+||||||+++++.....| +.+... ..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~ 249 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS 249 (1153)
T ss_pred cccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc
Confidence 3467788988888887766543 223345588999999999999999988775433 222110 00
Q ss_pred hhcccc----c-------chHHHHH-------------HHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHH
Q 044198 533 LTMWFG----E-------SEANVRD-------------VFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQL 588 (772)
Q Consensus 533 ~~~~vg----~-------se~~i~~-------------vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~l 588 (772)
...+.. . ..+.+.. ..+..-...+.+|++|+++.. ..+..+
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~---------------~~l~~L 314 (1153)
T PLN03210 250 MEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ---------------DVLDAL 314 (1153)
T ss_pred hhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH---------------HHHHHH
Confidence 000000 0 0000111 111122345678999998643 223333
Q ss_pred HHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhcc
Q 044198 589 LTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRK 647 (772)
Q Consensus 589 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~ 647 (772)
....+... .+--||.||...+.+ +....+.++.++.|+.++..++|..++-+
T Consensus 315 ~~~~~~~~--~GsrIIiTTrd~~vl-----~~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 315 AGQTQWFG--SGSRIIVITKDKHFL-----RAHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred HhhCccCC--CCcEEEEEeCcHHHH-----HhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 33333222 233466677744333 22246778999999999999999887643
No 495
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.67 E-value=0.00021 Score=74.63 Aligned_cols=168 Identities=22% Similarity=0.346 Sum_probs=101.9
Q ss_pred ceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhc-----ccccch--HHHHHHHHHHHhCCCeEEEEcCchhh
Q 044198 498 GVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM-----WFGESE--ANVRDVFDKARQSAPCVLFFDELDSI 567 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~-----~vg~se--~~i~~vf~~a~~~~p~ilfiDEid~l 567 (772)
.+|+.|.+||||-++|++....+ ..||+.+++..+-.. ..|..+ +.-..+|+.|... .+|+|||-.+
T Consensus 229 PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEm 305 (511)
T COG3283 229 PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEM 305 (511)
T ss_pred CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhc
Confidence 48999999999999999987665 679999998655321 222221 3345678877665 7999999666
Q ss_pred hhccCCCCCCCCchhHHHHHHHHHhcCCC---------CCCcEEEEeecCCC--CCCCccccCCC---CccccccCCCCC
Q 044198 568 AIQRGSSVGDGGGVDRIVNQLLTEMDGLS---------AKKTVFVIGATNRP--DMIDPALLRPG---RLDQLIYIPLPD 633 (772)
Q Consensus 568 ~~~r~~~~~~~~~~~~~~~~lL~~ld~~~---------~~~~v~vi~aTn~~--~~ld~allrpg---Rf~~~i~~~~p~ 633 (772)
+.++...||..|.... ..-+|-|||||..+ +..+..-.|.. |+. ++.+..|.
T Consensus 306 -------------Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLN-VLtl~~Pp 371 (511)
T COG3283 306 -------------SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLN-VLTLNLPP 371 (511)
T ss_pred -------------CHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhh-eeeecCCc
Confidence 5788889999987542 12468899999764 33343333211 454 44444444
Q ss_pred HHHHH-------HH-HHHhhccCCCC-Cccc---HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 044198 634 EHSRL-------QI-FKSCLRKSPVS-KDID---LKAIAKYTHGFSGADITEICQRACKCA 682 (772)
Q Consensus 634 ~~~r~-------~I-l~~~~~~~~~~-~~~~---~~~la~~~~g~sg~di~~l~~~a~~~a 682 (772)
..+|. +. ++++..+..+. ...+ +..|.++-=--+-++++|++-.|....
T Consensus 372 LRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 372 LRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred cccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHh
Confidence 43332 22 23333443333 1222 333333221124588998888776543
No 496
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.65 E-value=9.3e-06 Score=86.95 Aligned_cols=89 Identities=22% Similarity=0.280 Sum_probs=60.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC--CeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCC
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETG--CYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKRE 299 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~--~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~ 299 (772)
+..-+-|.||+||||||+.|+||+.-. .--+.++|.++..- .-....+..+||+- .-.|+.-+.|++.+.+..+.
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~l--pp~kR~ig~VFQ~Y-ALFPHltV~~NVafGLk~~~ 106 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDV--PPEKRPIGMVFQSY-ALFPHMTVEENVAFGLKVRK 106 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC--ChhhcccceeecCc-ccCCCCcHHHHhhhhhhhcC
Confidence 334477999999999999999998652 22477887766542 22345677888753 45788999999998887333
Q ss_pred C-CchhhHHHHHHHH
Q 044198 300 K-THGEVEKRIVSQL 313 (772)
Q Consensus 300 ~-~~~~~~~~v~~~L 313 (772)
. ...+..+++.+.|
T Consensus 107 ~~~~~~i~~rv~e~L 121 (352)
T COG3842 107 KLKKAEIKARVEEAL 121 (352)
T ss_pred CCCHHHHHHHHHHHH
Confidence 2 2334555555544
No 497
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.65 E-value=0.00086 Score=62.81 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=23.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANET 247 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l 247 (772)
....++++|+||+||||++.-++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 34579999999999999999999877
No 498
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.64 E-value=0.00032 Score=70.78 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=23.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANET 247 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l 247 (772)
....-|-|.||+|||||||.+.+|+..
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445559999999999999999999865
No 499
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.64 E-value=0.00023 Score=75.90 Aligned_cols=122 Identities=23% Similarity=0.263 Sum_probs=74.3
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhc-------------c---cccchHHHHHHHHHHH
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM-------------W---FGESEANVRDVFDKAR 552 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~-------------~---vg~se~~i~~vf~~a~ 552 (772)
|++..+-+.++||||||||+||..++... +...+.++..+-.+. + ....++.+..+-...+
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 56667778999999999999999877543 556666665432111 0 1112333333434455
Q ss_pred hCCCeEEEEcCchhhhhccCCC--CCCC--CchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCC
Q 044198 553 QSAPCVLFFDELDSIAIQRGSS--VGDG--GGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMI 613 (772)
Q Consensus 553 ~~~p~ilfiDEid~l~~~r~~~--~~~~--~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l 613 (772)
...++++++|-+-++.+..... .++. +...|.++++|..|.......++.+|.+....+.+
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~i 195 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQLREKI 195 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcccccc
Confidence 6678999999999998642211 0111 11245667777777766556677777765443333
No 500
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.64 E-value=6.8e-06 Score=80.43 Aligned_cols=71 Identities=15% Similarity=0.310 Sum_probs=46.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh--CCeEEEEechhhhhh-cccchHHHHHHHHHHHHHcCCceEEecccc
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANET--GCYFLCINGPEIMSK-MAGESESNLREAFNVAEKNAPSIIFIDEID 292 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l--~~~~~~v~~~~~~~~-~~g~~~~~l~~~f~~a~~~~p~il~iDEid 292 (772)
....-+.|+||+|||||||+|++...- ..--+.++|..+..+ ........+..+||... -.|..-++|++-
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fn-LFPHlTvleNv~ 99 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFN-LFPHLTVLENVT 99 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeeccccc-ccccchHHHHHH
Confidence 344559999999999999999998643 233577777544322 12233455666777542 456777777764
Done!