Query 044198
Match_columns 772
No_of_seqs 671 out of 4693
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 21:40:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 3E-132 1E-136 1164.5 50.8 748 2-749 16-771 (806)
2 1ypw_A Transitional endoplasmi 100.0 5E-104 2E-108 945.1 39.5 746 3-748 17-770 (806)
3 3hu3_A Transitional endoplasmi 100.0 3E-63 1E-67 559.8 45.5 467 3-469 17-484 (489)
4 4b4t_J 26S protease regulatory 100.0 6.1E-57 2.1E-61 487.3 20.7 273 445-736 131-404 (405)
5 4b4t_I 26S protease regulatory 100.0 9.1E-55 3.1E-59 470.6 19.1 259 453-730 173-432 (437)
6 4b4t_L 26S protease subunit RP 100.0 1.2E-53 4E-58 469.6 22.1 267 450-735 169-436 (437)
7 4b4t_H 26S protease regulatory 100.0 2.1E-53 7.1E-58 464.5 21.3 265 453-736 200-466 (467)
8 4b4t_M 26S protease regulatory 100.0 5.2E-53 1.8E-57 464.1 24.4 257 452-727 171-428 (434)
9 4b4t_K 26S protease regulatory 100.0 8.8E-53 3E-57 462.2 20.0 262 453-733 163-427 (428)
10 4b4t_J 26S protease regulatory 100.0 5.5E-46 1.9E-50 401.8 27.1 249 181-446 140-391 (405)
11 3cf0_A Transitional endoplasmi 100.0 2.2E-45 7.4E-50 392.2 27.9 293 449-741 2-301 (301)
12 4b4t_I 26S protease regulatory 100.0 7.8E-45 2.7E-49 393.1 26.9 250 182-448 175-427 (437)
13 4b4t_M 26S protease regulatory 100.0 5.4E-44 1.9E-48 392.5 26.7 250 182-448 174-426 (434)
14 4b4t_L 26S protease subunit RP 100.0 8.6E-44 2.9E-48 391.3 27.4 249 182-447 174-425 (437)
15 1xwi_A SKD1 protein; VPS4B, AA 100.0 5.4E-44 1.8E-48 384.4 25.0 286 453-743 3-321 (322)
16 3cf2_A TER ATPase, transitiona 100.0 1.2E-44 4E-49 424.4 20.5 267 455-725 197-463 (806)
17 4b4t_H 26S protease regulatory 100.0 2.8E-43 9.7E-48 384.6 27.5 247 182-445 202-451 (467)
18 4b4t_K 26S protease regulatory 100.0 1E-42 3.5E-47 382.3 29.1 246 182-444 165-414 (428)
19 2x8a_A Nuclear valosin-contain 100.0 3.2E-43 1.1E-47 369.2 20.6 266 455-730 3-273 (274)
20 3eie_A Vacuolar protein sortin 100.0 1.1E-42 3.9E-47 374.9 21.1 289 451-744 7-321 (322)
21 2qp9_X Vacuolar protein sortin 100.0 7.3E-42 2.5E-46 372.9 23.0 288 452-744 41-354 (355)
22 2zan_A Vacuolar protein sortin 100.0 4E-41 1.4E-45 377.6 20.1 287 452-743 124-443 (444)
23 2ce7_A Cell division protein F 100.0 6.1E-37 2.1E-41 342.3 21.7 248 456-723 10-258 (476)
24 3d8b_A Fidgetin-like protein 1 100.0 5E-37 1.7E-41 335.3 18.3 279 452-742 74-355 (357)
25 3b9p_A CG5977-PA, isoform A; A 100.0 8.5E-37 2.9E-41 325.3 19.2 280 452-743 11-294 (297)
26 3h4m_A Proteasome-activating n 100.0 2.8E-36 9.6E-41 319.3 21.3 271 454-743 9-282 (285)
27 3hu3_A Transitional endoplasmi 100.0 1.7E-36 6E-41 341.6 19.3 264 457-724 199-462 (489)
28 1lv7_A FTSH; alpha/beta domain 100.0 1.3E-35 4.4E-40 309.4 24.4 249 455-723 5-254 (257)
29 2x8a_A Nuclear valosin-contain 100.0 1.6E-35 5.6E-40 310.6 22.4 262 183-450 4-270 (274)
30 1r6b_X CLPA protein; AAA+, N-t 100.0 1.4E-34 4.8E-39 347.1 29.3 436 185-688 182-721 (758)
31 3vfd_A Spastin; ATPase, microt 100.0 4.1E-35 1.4E-39 324.2 21.1 281 450-742 103-386 (389)
32 3pxi_A Negative regulator of g 100.0 3.8E-34 1.3E-38 342.8 29.2 444 184-688 175-730 (758)
33 2dhr_A FTSH; AAA+ protein, hex 100.0 5.1E-35 1.7E-39 328.6 18.4 247 457-723 26-273 (499)
34 1ixz_A ATP-dependent metallopr 100.0 5.3E-34 1.8E-38 296.7 22.3 246 453-718 7-253 (254)
35 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1E-34 3.4E-39 303.3 16.0 247 457-723 1-251 (262)
36 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.1E-33 7E-38 301.9 25.6 263 183-448 6-303 (322)
37 3cf0_A Transitional endoplasmi 100.0 1.5E-33 5E-38 300.6 22.6 267 182-448 8-285 (301)
38 3qwz_A Transitional endoplasmi 100.0 2.8E-33 9.5E-38 275.7 20.4 191 3-193 20-211 (211)
39 3eie_A Vacuolar protein sortin 100.0 1.2E-32 4.2E-37 296.5 22.5 265 183-450 12-304 (322)
40 1qvr_A CLPB protein; coiled co 100.0 3.7E-32 1.3E-36 329.0 28.5 456 185-689 166-826 (854)
41 2r62_A Cell division protease 100.0 6.1E-35 2.1E-39 306.2 3.3 254 455-728 4-260 (268)
42 1iy2_A ATP-dependent metallopr 100.0 2.7E-32 9.2E-37 287.7 22.5 245 455-719 33-278 (278)
43 2qp9_X Vacuolar protein sortin 100.0 3.8E-32 1.3E-36 296.1 23.4 265 183-450 45-337 (355)
44 2ce7_A Cell division protein F 100.0 9.2E-31 3.1E-35 292.4 26.0 246 184-447 11-259 (476)
45 3tiw_A Transitional endoplasmi 100.0 9.4E-31 3.2E-35 253.1 21.0 170 3-172 17-186 (187)
46 2zan_A Vacuolar protein sortin 100.0 4.3E-31 1.5E-35 296.1 20.0 264 182-448 127-425 (444)
47 3h4m_A Proteasome-activating n 100.0 6.2E-30 2.1E-34 270.5 25.1 247 182-445 10-259 (285)
48 1lv7_A FTSH; alpha/beta domain 100.0 1.2E-29 4.2E-34 264.2 24.9 244 183-444 6-252 (257)
49 2dhr_A FTSH; AAA+ protein, hex 100.0 1.2E-29 4E-34 285.1 21.7 246 184-447 26-274 (499)
50 1ypw_A Transitional endoplasmi 100.0 7.1E-30 2.4E-34 305.2 17.9 266 456-725 198-463 (806)
51 1ixz_A ATP-dependent metallopr 100.0 2.3E-28 7.8E-33 254.1 24.6 227 183-410 10-239 (254)
52 2qz4_A Paraplegin; AAA+, SPG7, 100.0 7.7E-29 2.6E-33 258.6 20.3 245 185-447 2-252 (262)
53 3b9p_A CG5977-PA, isoform A; A 100.0 3.1E-28 1E-32 259.2 20.8 260 183-450 15-278 (297)
54 3d8b_A Fidgetin-like protein 1 100.0 3.7E-28 1.3E-32 265.0 21.4 261 182-450 77-340 (357)
55 1iy2_A ATP-dependent metallopr 100.0 3.6E-27 1.2E-31 248.5 25.5 226 184-410 35-263 (278)
56 2c9o_A RUVB-like 1; hexameric 100.0 1.9E-29 6.4E-34 284.3 5.8 361 184-721 32-437 (456)
57 3t15_A Ribulose bisphosphate c 99.9 7.6E-28 2.6E-32 255.1 13.6 176 492-673 32-222 (293)
58 3vfd_A Spastin; ATPase, microt 99.9 8.5E-27 2.9E-31 257.5 22.0 259 182-448 108-369 (389)
59 2r62_A Cell division protease 99.9 1.1E-28 3.6E-33 258.7 5.1 249 183-449 5-258 (268)
60 1g41_A Heat shock protein HSLU 99.9 3.5E-26 1.2E-30 251.6 17.9 389 189-733 15-442 (444)
61 2c9o_A RUVB-like 1; hexameric 99.9 2.3E-26 7.7E-31 259.1 -1.9 204 456-677 31-262 (456)
62 3cmw_A Protein RECA, recombina 99.9 2.9E-25 9.9E-30 276.2 4.7 153 456-609 1014-1217(1706)
63 1cz4_A VCP-like ATPase; double 99.9 9.2E-23 3.1E-27 198.1 18.4 160 10-176 7-178 (185)
64 3t15_A Ribulose bisphosphate c 99.9 3.7E-23 1.2E-27 219.1 16.3 175 219-399 32-223 (293)
65 3syl_A Protein CBBX; photosynt 99.9 7.7E-22 2.6E-26 210.8 13.8 216 461-688 30-268 (309)
66 1g41_A Heat shock protein HSLU 99.8 6E-22 2.1E-26 217.9 4.3 169 462-641 15-188 (444)
67 3m6a_A ATP-dependent protease 99.8 3E-22 1E-26 229.5 1.4 260 457-770 76-369 (543)
68 3uk6_A RUVB-like 2; hexameric 99.8 1.4E-20 4.7E-25 206.2 13.0 220 457-721 39-330 (368)
69 1ofh_A ATP-dependent HSL prote 99.8 1.1E-19 3.6E-24 194.0 11.2 245 462-722 15-300 (310)
70 3pfi_A Holliday junction ATP-d 99.8 2.6E-18 8.8E-23 185.9 19.3 215 458-723 25-256 (338)
71 1d2n_A N-ethylmaleimide-sensit 99.8 2.4E-18 8.2E-23 180.3 16.9 178 491-679 59-246 (272)
72 3hws_A ATP-dependent CLP prote 99.8 4E-19 1.4E-23 194.3 10.5 243 463-719 16-347 (363)
73 3syl_A Protein CBBX; photosynt 99.8 5.7E-18 2E-22 180.7 18.6 211 190-410 32-265 (309)
74 1hqc_A RUVB; extended AAA-ATPa 99.7 1.7E-17 5.8E-22 178.2 18.2 233 458-740 8-260 (324)
75 2z4s_A Chromosomal replication 99.7 1.2E-17 4.2E-22 186.6 14.9 193 496-722 130-333 (440)
76 4akg_A Glutathione S-transfera 99.7 6.1E-17 2.1E-21 210.4 22.4 324 222-565 1266-1677(2695)
77 3pvs_A Replication-associated 99.7 8.5E-18 2.9E-22 187.5 11.5 229 458-744 22-267 (447)
78 1wlf_A PEX1, peroxisome biogen 99.7 3.9E-17 1.3E-21 157.7 14.4 162 7-171 10-176 (179)
79 1l8q_A Chromosomal replication 99.7 4.8E-17 1.6E-21 174.9 15.8 170 495-681 36-214 (324)
80 1um8_A ATP-dependent CLP prote 99.7 2.7E-17 9.3E-22 180.6 11.0 244 462-721 21-365 (376)
81 3m6a_A ATP-dependent protease 99.7 5.8E-17 2E-21 185.6 11.8 167 186-370 78-266 (543)
82 1d2n_A N-ethylmaleimide-sensit 99.7 2.8E-16 9.6E-21 164.5 15.8 198 186-392 30-230 (272)
83 2chg_A Replication factor C sm 99.7 7E-16 2.4E-20 155.3 18.1 201 457-719 12-224 (226)
84 2v1u_A Cell division control p 99.7 7E-16 2.4E-20 169.4 19.6 239 462-739 19-302 (387)
85 1ofh_A ATP-dependent HSL prote 99.7 6.9E-16 2.4E-20 164.3 18.5 214 190-405 16-271 (310)
86 1r6b_X CLPA protein; AAA+, N-t 99.7 5.2E-16 1.8E-20 185.9 18.2 243 459-740 183-456 (758)
87 1g8p_A Magnesium-chelatase 38 99.7 2.6E-16 8.7E-21 170.8 14.0 217 455-721 17-322 (350)
88 3cmw_A Protein RECA, recombina 99.7 7.5E-16 2.6E-20 192.2 19.2 150 185-335 1016-1218(1706)
89 4fcw_A Chaperone protein CLPB; 99.7 1.1E-16 3.8E-21 170.8 10.0 209 462-689 17-285 (311)
90 3bos_A Putative DNA replicatio 99.7 4E-16 1.4E-20 159.4 13.2 181 495-719 51-241 (242)
91 3uk6_A RUVB-like 2; hexameric 99.7 2.8E-15 9.7E-20 163.9 20.3 201 185-410 40-313 (368)
92 3pxg_A Negative regulator of g 99.7 2E-16 6.8E-21 178.3 10.9 185 458-682 176-385 (468)
93 3pfi_A Holliday junction ATP-d 99.6 5.3E-15 1.8E-19 159.8 21.7 194 182-405 22-232 (338)
94 1in4_A RUVB, holliday junction 99.6 4.3E-15 1.5E-19 160.2 20.3 231 460-741 23-273 (334)
95 2r44_A Uncharacterized protein 99.6 3.2E-16 1.1E-20 169.0 11.2 207 461-721 26-297 (331)
96 1sxj_A Activator 1 95 kDa subu 99.6 3.9E-16 1.3E-20 178.3 11.9 204 456-679 33-253 (516)
97 3te6_A Regulatory protein SIR3 99.6 4.7E-16 1.6E-20 164.5 11.2 180 494-689 43-293 (318)
98 1njg_A DNA polymerase III subu 99.6 2.8E-15 9.6E-20 152.9 15.7 202 458-719 19-249 (250)
99 3hws_A ATP-dependent CLP prote 99.6 1.1E-14 3.6E-19 159.1 20.9 219 190-410 16-325 (363)
100 1jbk_A CLPB protein; beta barr 99.6 1.7E-16 5.7E-21 156.0 5.4 158 459-641 19-194 (195)
101 2qby_B CDC6 homolog 3, cell di 99.6 3.6E-15 1.2E-19 163.8 16.4 211 462-721 20-270 (384)
102 3cmu_A Protein RECA, recombina 99.6 1.3E-15 4.6E-20 191.7 13.8 387 209-609 366-868 (2050)
103 1jbk_A CLPB protein; beta barr 99.6 2.7E-15 9.2E-20 147.2 13.0 159 185-366 18-194 (195)
104 3u61_B DNA polymerase accessor 99.6 2.3E-15 7.8E-20 161.7 13.4 185 457-678 21-219 (324)
105 1qvr_A CLPB protein; coiled co 99.6 2.4E-15 8.2E-20 181.9 14.4 201 458-683 166-393 (854)
106 3pxi_A Negative regulator of g 99.6 2.7E-15 9.3E-20 179.4 14.0 185 458-682 176-385 (758)
107 1hqc_A RUVB; extended AAA-ATPa 99.6 1.7E-14 5.8E-19 154.7 18.2 195 182-405 5-216 (324)
108 2qby_A CDC6 homolog 1, cell di 99.6 2.1E-14 7E-19 157.5 17.7 203 461-684 19-254 (386)
109 1sxj_D Activator 1 41 kDa subu 99.6 1.1E-14 3.7E-19 158.1 15.2 187 457-681 32-241 (353)
110 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 3.5E-15 1.2E-19 167.8 10.6 192 463-686 23-270 (500)
111 3pxg_A Negative regulator of g 99.6 2E-14 6.9E-19 161.9 16.2 184 184-405 175-383 (468)
112 1l8q_A Chromosomal replication 99.6 9.5E-14 3.3E-18 149.0 19.8 194 184-404 6-212 (324)
113 1fnn_A CDC6P, cell division co 99.6 5.3E-14 1.8E-18 154.6 17.9 200 461-684 16-256 (389)
114 2chq_A Replication factor C sm 99.5 2.5E-14 8.5E-19 152.8 14.1 188 457-678 12-207 (319)
115 2p65_A Hypothetical protein PF 99.5 3.5E-15 1.2E-19 145.9 6.6 150 460-633 20-187 (187)
116 2v1u_A Cell division control p 99.5 2E-13 7E-18 149.7 19.4 203 186-407 16-256 (387)
117 2p65_A Hypothetical protein PF 99.5 2.6E-14 9E-19 139.6 11.0 152 185-358 18-187 (187)
118 1sxj_B Activator 1 37 kDa subu 99.5 6.6E-14 2.3E-18 149.8 15.0 184 458-679 17-213 (323)
119 1iqp_A RFCS; clamp loader, ext 99.5 7.8E-14 2.7E-18 149.5 15.3 185 457-679 20-216 (327)
120 3te6_A Regulatory protein SIR3 99.5 5.1E-14 1.7E-18 148.9 13.3 159 191-372 22-213 (318)
121 1um8_A ATP-dependent CLP prote 99.5 3.8E-13 1.3E-17 147.4 20.7 216 190-409 22-341 (376)
122 1jr3_A DNA polymerase III subu 99.5 1.1E-13 3.6E-18 151.5 15.1 184 459-679 13-225 (373)
123 3u61_B DNA polymerase accessor 99.5 2.9E-13 9.9E-18 145.2 17.6 178 182-393 19-210 (324)
124 4fcw_A Chaperone protein CLPB; 99.5 3.8E-13 1.3E-17 143.3 18.2 204 189-409 17-280 (311)
125 2z4s_A Chromosomal replication 99.5 2.7E-13 9.2E-18 151.4 17.5 199 184-407 100-313 (440)
126 3f9v_A Minichromosome maintena 99.5 6.4E-15 2.2E-19 170.2 4.2 163 463-647 296-492 (595)
127 3cmu_A Protein RECA, recombina 99.5 3.4E-13 1.1E-17 170.1 19.5 115 492-607 1423-1561(2050)
128 3pvs_A Replication-associated 99.5 5E-13 1.7E-17 149.0 18.4 184 183-405 20-220 (447)
129 2chg_A Replication factor C sm 99.5 2.1E-12 7.3E-17 129.5 21.3 174 183-391 11-196 (226)
130 1sxj_E Activator 1 40 kDa subu 99.5 5E-13 1.7E-17 145.1 17.6 186 457-679 9-241 (354)
131 3bos_A Putative DNA replicatio 99.5 1.4E-12 4.7E-17 133.0 19.9 186 186-407 25-224 (242)
132 2qby_B CDC6 homolog 3, cell di 99.5 1.4E-12 4.8E-17 143.1 19.8 192 189-405 20-250 (384)
133 2r44_A Uncharacterized protein 99.5 7.6E-13 2.6E-17 142.4 17.0 152 188-372 26-200 (331)
134 3k1j_A LON protease, ATP-depen 99.5 1E-13 3.4E-18 161.2 10.3 261 455-770 34-419 (604)
135 3vkg_A Dynein heavy chain, cyt 99.4 1.3E-12 4.4E-17 170.8 21.0 323 222-565 1303-1714(3245)
136 1sxj_A Activator 1 95 kDa subu 99.4 2.6E-13 8.8E-18 154.9 12.3 194 182-390 32-243 (516)
137 3aji_B S6C, proteasome (prosom 99.4 4.7E-14 1.6E-18 119.1 4.6 82 633-734 2-83 (83)
138 2qby_A CDC6 homolog 1, cell di 99.4 2.4E-12 8.4E-17 140.9 19.4 200 186-406 17-251 (386)
139 1g8p_A Magnesium-chelatase 38 99.4 2.6E-12 8.8E-17 139.1 19.1 159 184-368 19-230 (350)
140 3vlf_B 26S protease regulatory 99.4 1.1E-13 3.9E-18 117.7 6.5 86 633-737 2-88 (88)
141 2bjv_A PSP operon transcriptio 99.4 1.6E-13 5.4E-18 142.9 8.2 194 460-682 4-240 (265)
142 1njg_A DNA polymerase III subu 99.4 6.1E-12 2.1E-16 127.9 19.6 187 183-404 17-232 (250)
143 1fnn_A CDC6P, cell division co 99.4 6.9E-12 2.3E-16 137.7 21.2 200 186-407 14-254 (389)
144 2krk_A 26S protease regulatory 99.4 2.6E-13 8.8E-18 114.7 6.1 78 628-724 7-84 (86)
145 4akg_A Glutathione S-transfera 99.4 9.1E-12 3.1E-16 162.4 22.8 128 223-367 645-790 (2695)
146 1ojl_A Transcriptional regulat 99.4 3.3E-13 1.1E-17 143.3 7.8 190 463-682 3-235 (304)
147 1in4_A RUVB, holliday junction 99.4 1.5E-11 5.3E-16 132.3 21.1 195 183-407 19-230 (334)
148 3kw6_A 26S protease regulatory 99.4 5.3E-13 1.8E-17 111.1 6.5 75 630-723 1-75 (78)
149 1sxj_D Activator 1 41 kDa subu 99.3 8.7E-12 3E-16 135.1 15.9 174 182-391 30-227 (353)
150 1sxj_C Activator 1 40 kDa subu 99.3 7.5E-12 2.5E-16 135.2 15.2 172 457-665 20-203 (340)
151 2chq_A Replication factor C sm 99.3 5.6E-12 1.9E-16 134.4 13.9 178 182-390 10-195 (319)
152 1sxj_B Activator 1 37 kDa subu 99.3 1.9E-11 6.5E-16 130.5 18.0 175 183-393 15-203 (323)
153 1iqp_A RFCS; clamp loader, ext 99.3 3.5E-11 1.2E-15 128.7 20.0 178 183-391 19-204 (327)
154 1a5t_A Delta prime, HOLB; zinc 99.3 2.1E-11 7.2E-16 131.2 17.9 158 495-678 23-208 (334)
155 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 1.1E-11 3.7E-16 139.4 15.0 152 190-370 23-196 (500)
156 2bjv_A PSP operon transcriptio 99.3 2E-11 6.7E-16 126.9 14.3 149 186-362 3-182 (265)
157 2dzn_B 26S protease regulatory 99.3 6.4E-13 2.2E-17 111.6 1.7 81 635-734 1-82 (82)
158 3n70_A Transport activator; si 99.3 6.1E-12 2.1E-16 118.2 7.9 91 495-610 23-116 (145)
159 1jr3_A DNA polymerase III subu 99.3 1E-10 3.5E-15 127.6 18.2 186 183-403 10-224 (373)
160 3n70_A Transport activator; si 99.2 1.3E-11 4.5E-16 115.9 8.7 112 190-335 2-116 (145)
161 1sxj_E Activator 1 40 kDa subu 99.2 7.6E-11 2.6E-15 127.8 16.0 177 182-391 7-229 (354)
162 3co5_A Putative two-component 99.2 1.1E-12 3.7E-17 123.1 1.1 112 463-610 5-116 (143)
163 2gno_A DNA polymerase III, gam 99.2 2.9E-11 1E-15 127.9 11.6 125 496-645 18-152 (305)
164 1w5s_A Origin recognition comp 99.2 1.8E-10 6.2E-15 127.4 18.2 204 462-683 22-274 (412)
165 1ojl_A Transcriptional regulat 99.2 7.8E-11 2.7E-15 124.9 13.4 144 190-361 3-177 (304)
166 1sxj_C Activator 1 40 kDa subu 99.2 7.7E-10 2.6E-14 119.3 19.5 173 182-390 18-203 (340)
167 3co5_A Putative two-component 99.2 2.5E-11 8.7E-16 113.7 6.7 112 190-335 5-116 (143)
168 3f9v_A Minichromosome maintena 99.1 9.9E-11 3.4E-15 135.1 8.7 162 190-371 296-491 (595)
169 1a5t_A Delta prime, HOLB; zinc 99.0 8.9E-09 3.1E-13 110.6 19.5 164 194-392 7-198 (334)
170 3vkg_A Dynein heavy chain, cyt 98.9 1.2E-08 4.1E-13 134.0 19.5 128 223-367 604-750 (3245)
171 1w5s_A Origin recognition comp 98.9 1E-08 3.5E-13 113.2 16.2 204 188-406 21-272 (412)
172 2gno_A DNA polymerase III, gam 98.9 7.8E-09 2.7E-13 109.2 14.4 142 193-370 1-152 (305)
173 3k1j_A LON protease, ATP-depen 98.9 1E-08 3.4E-13 119.1 16.0 52 182-248 34-85 (604)
174 2vhj_A Ntpase P4, P4; non- hyd 98.9 4.3E-10 1.5E-14 117.6 4.0 122 492-617 119-242 (331)
175 3ec2_A DNA replication protein 98.9 5.7E-09 2E-13 101.4 10.0 105 219-335 34-143 (180)
176 2krk_A 26S protease regulatory 98.8 2.5E-09 8.4E-14 90.2 5.7 77 354-447 8-84 (86)
177 3ec2_A DNA replication protein 98.8 2.1E-09 7.3E-14 104.5 5.9 106 492-611 34-144 (180)
178 2kjq_A DNAA-related protein; s 98.8 3.5E-09 1.2E-13 99.6 5.2 103 495-627 35-143 (149)
179 3kw6_A 26S protease regulatory 98.8 8.7E-09 3E-13 85.4 6.4 73 355-444 1-73 (78)
180 2kjq_A DNAA-related protein; s 98.8 7.9E-09 2.7E-13 97.2 6.7 100 222-349 35-140 (149)
181 1svm_A Large T antigen; AAA+ f 98.7 5.7E-09 1.9E-13 113.1 5.4 119 492-631 165-284 (377)
182 3f8t_A Predicted ATPase involv 98.7 2.1E-08 7.1E-13 109.5 8.6 143 464-635 215-384 (506)
183 3vlf_B 26S protease regulatory 98.7 2.5E-08 8.7E-13 84.5 6.0 74 358-448 2-75 (88)
184 1ny5_A Transcriptional regulat 98.6 2.7E-08 9.4E-13 108.9 7.6 168 496-682 160-370 (387)
185 2vhj_A Ntpase P4, P4; non- hyd 98.6 2.1E-08 7.2E-13 104.9 6.1 120 219-342 119-242 (331)
186 3aji_B S6C, proteasome (prosom 98.6 3.9E-08 1.3E-12 82.5 6.3 74 358-448 2-75 (83)
187 2qen_A Walker-type ATPase; unk 98.6 1.9E-06 6.5E-11 92.4 20.9 180 188-393 11-240 (350)
188 2fna_A Conserved hypothetical 98.6 8.7E-07 3E-11 95.3 18.3 185 460-677 11-252 (357)
189 2w58_A DNAI, primosome compone 98.6 4.3E-08 1.5E-12 97.0 6.0 69 497-567 55-127 (202)
190 2fna_A Conserved hypothetical 98.6 1.3E-06 4.5E-11 93.9 17.9 177 187-393 11-244 (357)
191 2w58_A DNAI, primosome compone 98.5 1.4E-07 4.8E-12 93.3 7.6 71 223-295 54-128 (202)
192 2r2a_A Uncharacterized protein 98.5 7.8E-08 2.7E-12 94.8 5.5 127 498-635 7-156 (199)
193 2qen_A Walker-type ATPase; unk 98.5 2.7E-06 9.3E-11 91.2 18.2 189 460-677 10-248 (350)
194 2r2a_A Uncharacterized protein 98.5 2.3E-07 7.7E-12 91.5 7.5 125 224-358 6-154 (199)
195 1qcs_A N-ethylmaleimide sensit 98.5 3.9E-06 1.3E-10 83.0 16.3 154 12-172 10-191 (211)
196 1cr5_A SEC18P (residues 22 - 2 98.5 3.2E-06 1.1E-10 82.1 15.4 149 12-171 8-186 (189)
197 2qgz_A Helicase loader, putati 98.4 1E-07 3.6E-12 100.9 5.2 70 496-567 152-226 (308)
198 1tf7_A KAIC; homohexamer, hexa 98.4 1.7E-06 5.7E-11 98.7 14.2 76 492-567 277-383 (525)
199 1ny5_A Transcriptional regulat 98.4 1.8E-06 6.2E-11 94.4 13.8 120 190-335 138-282 (387)
200 3dzd_A Transcriptional regulat 98.4 3.1E-07 1.1E-11 99.7 7.6 167 496-681 152-360 (368)
201 1svm_A Large T antigen; AAA+ f 98.4 1.9E-07 6.6E-12 101.0 5.5 120 218-356 164-284 (377)
202 2dzn_B 26S protease regulatory 98.2 3.6E-07 1.2E-11 76.3 2.7 69 360-445 1-69 (82)
203 2jv2_A Putative uncharacterize 98.2 5.7E-06 1.9E-10 68.2 9.1 70 96-171 11-80 (83)
204 1tue_A Replication protein E1; 98.2 1E-06 3.4E-11 86.0 5.2 109 493-630 55-177 (212)
205 3dzd_A Transcriptional regulat 98.2 1.1E-05 3.8E-10 87.4 13.2 120 190-335 130-273 (368)
206 2qgz_A Helicase loader, putati 98.1 1E-06 3.5E-11 93.2 4.2 70 223-294 152-226 (308)
207 1tue_A Replication protein E1; 98.1 4.8E-06 1.6E-10 81.2 8.1 111 220-357 55-179 (212)
208 1ye8_A Protein THEP1, hypothet 98.1 1.5E-05 5E-10 77.1 10.1 27 498-524 2-28 (178)
209 2yuj_A Ubiquitin fusion degrad 98.0 0.00013 4.5E-09 69.5 15.1 138 22-164 40-182 (190)
210 1zc1_A Ubiquitin fusion degrad 98.0 0.00017 6E-09 69.6 16.1 144 22-170 45-196 (208)
211 1ye8_A Protein THEP1, hypothet 98.0 7.6E-05 2.6E-09 72.0 13.7 26 225-250 2-27 (178)
212 3f8t_A Predicted ATPase involv 97.9 1.8E-05 6.2E-10 86.5 8.1 118 225-361 241-385 (506)
213 1u0j_A DNA replication protein 97.8 1.4E-05 4.8E-10 81.6 5.4 29 494-522 102-130 (267)
214 1n0w_A DNA repair protein RAD5 97.8 4.5E-05 1.5E-09 77.1 8.6 79 219-297 20-134 (243)
215 2w0m_A SSO2452; RECA, SSPF, un 97.8 9E-05 3.1E-09 74.2 10.5 109 219-335 19-168 (235)
216 1jr3_D DNA polymerase III, del 97.8 6.3E-05 2.2E-09 80.7 9.9 156 495-678 17-188 (343)
217 3hr8_A Protein RECA; alpha and 97.7 0.00014 5E-09 77.7 11.2 114 219-332 57-195 (356)
218 2cvh_A DNA repair and recombin 97.7 6.2E-05 2.1E-09 74.8 7.9 40 492-531 16-55 (220)
219 3hr8_A Protein RECA; alpha and 97.7 8.2E-05 2.8E-09 79.6 8.9 116 492-607 57-195 (356)
220 1n0w_A DNA repair protein RAD5 97.7 2.9E-05 9.8E-10 78.6 5.0 118 492-611 20-175 (243)
221 1xp8_A RECA protein, recombina 97.6 8.2E-05 2.8E-09 80.2 8.3 116 492-607 70-208 (366)
222 2w0m_A SSO2452; RECA, SSPF, un 97.6 5.9E-05 2E-09 75.6 6.5 37 492-528 19-58 (235)
223 1u0j_A DNA replication protein 97.6 8.2E-05 2.8E-09 75.9 7.4 27 223-249 104-130 (267)
224 2ehv_A Hypothetical protein PH 97.6 0.00016 5.6E-09 73.3 9.7 114 492-613 26-185 (251)
225 2cvh_A DNA repair and recombin 97.6 0.00017 5.9E-09 71.6 9.5 39 219-257 16-54 (220)
226 4a74_A DNA repair and recombin 97.6 9.2E-05 3.2E-09 74.1 7.3 29 219-247 21-49 (231)
227 2zr9_A Protein RECA, recombina 97.6 4.9E-05 1.7E-09 81.6 5.3 117 492-608 57-196 (349)
228 2zr9_A Protein RECA, recombina 97.6 0.00013 4.4E-09 78.3 8.3 78 219-296 57-153 (349)
229 4a74_A DNA repair and recombin 97.5 4.3E-05 1.5E-09 76.6 4.1 118 492-611 21-181 (231)
230 2ehv_A Hypothetical protein PH 97.5 0.00027 9.4E-09 71.6 10.1 38 219-256 26-67 (251)
231 1xp8_A RECA protein, recombina 97.5 0.00032 1.1E-08 75.5 10.9 115 219-333 70-209 (366)
232 1v5w_A DMC1, meiotic recombina 97.5 0.00023 8E-09 76.2 9.7 116 219-334 118-273 (343)
233 2z43_A DNA repair and recombin 97.5 0.0001 3.4E-09 78.5 6.5 116 492-607 103-255 (324)
234 2z43_A DNA repair and recombin 97.5 0.00016 5.4E-09 76.9 7.7 78 219-296 103-217 (324)
235 1u94_A RECA protein, recombina 97.4 0.0003 1E-08 75.5 9.5 78 219-296 59-155 (356)
236 1qhx_A CPT, protein (chloramph 97.4 0.00031 1E-08 67.3 8.5 36 223-258 3-38 (178)
237 3lda_A DNA repair protein RAD5 97.4 0.00024 8.3E-09 77.4 8.7 116 219-334 174-327 (400)
238 3io5_A Recombination and repai 97.4 0.00021 7.3E-09 74.4 7.4 115 492-607 25-169 (333)
239 1v5w_A DMC1, meiotic recombina 97.4 0.00015 5.2E-09 77.7 6.5 115 492-608 118-272 (343)
240 1pzn_A RAD51, DNA repair and r 97.4 0.00028 9.5E-09 75.8 8.5 39 219-257 127-174 (349)
241 1u94_A RECA protein, recombina 97.4 0.00015 5E-09 78.0 5.7 117 492-608 59-198 (356)
242 3lda_A DNA repair protein RAD5 97.3 0.00012 4E-09 79.9 4.8 118 492-609 174-327 (400)
243 1z6t_A APAF-1, apoptotic prote 97.3 0.0033 1.1E-07 72.4 17.3 166 189-393 124-322 (591)
244 1pzn_A RAD51, DNA repair and r 97.3 0.00017 5.9E-09 77.4 5.9 118 492-611 127-287 (349)
245 3io5_A Recombination and repai 97.3 0.0006 2.1E-08 71.0 9.3 78 219-297 25-126 (333)
246 3vaa_A Shikimate kinase, SK; s 97.3 0.00022 7.4E-09 70.0 5.1 34 221-254 23-56 (199)
247 2eyu_A Twitching motility prot 97.2 0.00022 7.5E-09 73.2 5.1 79 214-292 16-108 (261)
248 1qhx_A CPT, protein (chloramph 97.2 0.00051 1.7E-08 65.7 7.2 35 497-531 4-38 (178)
249 2orw_A Thymidine kinase; TMTK, 97.2 9.8E-05 3.3E-09 71.6 1.5 69 498-567 5-88 (184)
250 2dr3_A UPF0273 protein PH0284; 97.2 0.0024 8.3E-08 64.3 12.1 38 219-256 19-59 (247)
251 1z6t_A APAF-1, apoptotic prote 97.2 0.0031 1.1E-07 72.6 14.4 168 462-667 124-321 (591)
252 3trf_A Shikimate kinase, SK; a 97.1 0.00036 1.2E-08 67.3 4.7 32 223-254 5-36 (185)
253 1zp6_A Hypothetical protein AT 97.1 0.00028 9.7E-09 68.4 4.0 40 220-259 6-45 (191)
254 3sfz_A APAF-1, apoptotic pepti 97.1 0.0053 1.8E-07 77.0 16.7 167 462-667 124-321 (1249)
255 2eyu_A Twitching motility prot 97.1 0.0006 2.1E-08 69.9 6.6 75 490-564 19-107 (261)
256 3vaa_A Shikimate kinase, SK; s 97.1 0.00037 1.3E-08 68.3 4.7 35 493-527 22-56 (199)
257 3jvv_A Twitching mobility prot 97.0 0.0005 1.7E-08 73.8 5.7 70 223-292 123-206 (356)
258 2rhm_A Putative kinase; P-loop 97.0 0.00051 1.8E-08 66.6 5.0 33 221-253 3-35 (193)
259 2p5t_B PEZT; postsegregational 97.0 0.0013 4.5E-08 67.1 8.2 39 221-259 30-68 (253)
260 2i1q_A DNA repair and recombin 97.0 0.00049 1.7E-08 73.0 4.8 116 492-607 94-256 (322)
261 2b8t_A Thymidine kinase; deoxy 97.0 0.0012 4.1E-08 65.8 7.3 70 225-295 14-102 (223)
262 1kag_A SKI, shikimate kinase I 97.0 0.00056 1.9E-08 65.1 4.7 29 224-252 5-33 (173)
263 2i1q_A DNA repair and recombin 96.9 0.00097 3.3E-08 70.7 6.9 28 219-246 94-121 (322)
264 3trf_A Shikimate kinase, SK; a 96.9 0.00056 1.9E-08 65.9 4.5 32 496-527 5-36 (185)
265 1g5t_A COB(I)alamin adenosyltr 96.9 0.0046 1.6E-07 59.9 10.8 101 497-610 29-163 (196)
266 1zp6_A Hypothetical protein AT 96.9 0.00042 1.4E-08 67.2 3.5 40 493-532 6-45 (191)
267 3sfz_A APAF-1, apoptotic pepti 96.9 0.0068 2.3E-07 76.0 15.5 168 189-393 124-322 (1249)
268 3jvv_A Twitching mobility prot 96.9 0.001 3.5E-08 71.3 6.8 99 495-613 122-234 (356)
269 3kb2_A SPBC2 prophage-derived 96.9 0.00055 1.9E-08 64.9 4.2 31 225-255 3-33 (173)
270 2b8t_A Thymidine kinase; deoxy 96.9 0.003 1E-07 62.9 9.6 69 498-567 14-101 (223)
271 2dr3_A UPF0273 protein PH0284; 96.9 0.0024 8E-08 64.4 9.0 38 492-529 19-59 (247)
272 3iij_A Coilin-interacting nucl 96.9 0.00089 3E-08 64.3 5.5 32 222-253 10-41 (180)
273 1nlf_A Regulatory protein REPA 96.9 0.0027 9.3E-08 65.7 9.6 29 219-247 26-54 (279)
274 1y63_A LMAJ004144AAA protein; 96.9 0.00057 1.9E-08 66.1 4.1 31 223-253 10-41 (184)
275 2a5y_B CED-4; apoptosis; HET: 96.9 0.014 4.8E-07 66.6 16.3 166 192-392 131-330 (549)
276 1via_A Shikimate kinase; struc 96.9 0.00069 2.4E-08 64.8 4.5 29 225-253 6-34 (175)
277 2iut_A DNA translocase FTSK; n 96.9 0.0042 1.4E-07 70.0 11.4 74 557-642 345-420 (574)
278 4gp7_A Metallophosphoesterase; 96.8 0.00053 1.8E-08 65.5 3.4 22 221-242 7-28 (171)
279 1nlf_A Regulatory protein REPA 96.8 0.001 3.5E-08 68.9 5.9 29 492-520 26-54 (279)
280 3rlf_A Maltose/maltodextrin im 96.8 0.0015 5.2E-08 70.3 7.3 29 220-248 26-54 (381)
281 1zuh_A Shikimate kinase; alpha 96.8 0.00081 2.8E-08 63.8 4.6 32 223-254 7-38 (168)
282 2rhm_A Putative kinase; P-loop 96.8 0.00074 2.5E-08 65.4 4.3 33 494-526 3-35 (193)
283 3upu_A ATP-dependent DNA helic 96.8 0.0017 5.8E-08 72.5 7.7 96 498-609 47-166 (459)
284 3upu_A ATP-dependent DNA helic 96.8 0.002 7E-08 71.8 8.4 23 225-247 47-69 (459)
285 2ewv_A Twitching motility prot 96.8 0.00095 3.3E-08 72.2 5.3 79 214-292 127-219 (372)
286 2p5t_B PEZT; postsegregational 96.8 0.0019 6.6E-08 65.8 7.2 38 495-532 31-68 (253)
287 3rlf_A Maltose/maltodextrin im 96.8 0.0016 5.5E-08 70.1 6.7 28 494-521 27-54 (381)
288 2ius_A DNA translocase FTSK; n 96.8 0.007 2.4E-07 67.7 12.1 75 283-367 297-374 (512)
289 4gp7_A Metallophosphoesterase; 96.7 0.0008 2.7E-08 64.2 3.9 21 495-515 8-28 (171)
290 4g1u_C Hemin import ATP-bindin 96.7 0.0017 6E-08 66.6 6.6 27 494-520 35-61 (266)
291 3tui_C Methionine import ATP-b 96.7 0.0025 8.6E-08 68.1 8.1 28 220-247 51-78 (366)
292 2iut_A DNA translocase FTSK; n 96.7 0.011 3.9E-07 66.5 13.7 74 284-367 345-420 (574)
293 2iyv_A Shikimate kinase, SK; t 96.7 0.00099 3.4E-08 64.1 4.4 29 225-253 4-32 (184)
294 2r6a_A DNAB helicase, replicat 96.7 0.0047 1.6E-07 68.7 10.6 38 219-256 199-240 (454)
295 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0036 1.2E-07 64.1 8.8 38 223-260 4-44 (260)
296 1kag_A SKI, shikimate kinase I 96.7 0.0011 3.9E-08 62.9 4.7 29 497-525 5-33 (173)
297 3iij_A Coilin-interacting nucl 96.7 0.001 3.5E-08 63.8 4.3 32 495-526 10-41 (180)
298 3fvq_A Fe(3+) IONS import ATP- 96.7 0.00012 3.9E-09 78.5 -2.7 40 220-259 27-68 (359)
299 3gfo_A Cobalt import ATP-bindi 96.7 0.0018 6.1E-08 66.9 6.3 28 494-521 32-59 (275)
300 2ius_A DNA translocase FTSK; n 96.7 0.0043 1.5E-07 69.4 9.7 76 556-643 297-375 (512)
301 3uie_A Adenylyl-sulfate kinase 96.7 0.0015 5.2E-08 63.9 5.5 39 221-259 23-64 (200)
302 2ze6_A Isopentenyl transferase 96.7 0.00099 3.4E-08 68.0 4.3 32 225-256 3-34 (253)
303 3kb2_A SPBC2 prophage-derived 96.7 0.001 3.6E-08 63.0 4.2 30 498-527 3-32 (173)
304 1y63_A LMAJ004144AAA protein; 96.7 0.00088 3E-08 64.7 3.7 31 496-526 10-41 (184)
305 4eun_A Thermoresistant glucoki 96.7 0.0015 5.1E-08 64.0 5.3 36 222-259 28-63 (200)
306 1via_A Shikimate kinase; struc 96.7 0.0011 3.8E-08 63.3 4.2 29 498-526 6-34 (175)
307 1knq_A Gluconate kinase; ALFA/ 96.7 0.0015 5E-08 62.3 5.1 35 223-259 8-42 (175)
308 1gvn_B Zeta; postsegregational 96.7 0.0014 4.8E-08 68.2 5.3 38 222-259 32-69 (287)
309 2orw_A Thymidine kinase; TMTK, 96.7 0.0013 4.4E-08 63.6 4.6 31 224-254 4-37 (184)
310 1aky_A Adenylate kinase; ATP:A 96.7 0.0015 5.2E-08 64.9 5.3 31 223-253 4-34 (220)
311 3crm_A TRNA delta(2)-isopenten 96.6 0.0012 4E-08 69.5 4.5 36 497-532 6-41 (323)
312 3cm0_A Adenylate kinase; ATP-b 96.6 0.0012 4.1E-08 63.6 4.4 29 224-252 5-33 (186)
313 1e6c_A Shikimate kinase; phosp 96.6 0.0014 4.7E-08 62.2 4.7 30 224-253 3-32 (173)
314 4g1u_C Hemin import ATP-bindin 96.6 0.0024 8.3E-08 65.6 6.9 28 220-247 34-61 (266)
315 1cr0_A DNA primase/helicase; R 96.6 0.0015 5.1E-08 68.2 5.4 111 491-607 30-194 (296)
316 3fvq_A Fe(3+) IONS import ATP- 96.6 0.0027 9.4E-08 67.8 7.5 28 494-521 28-55 (359)
317 2cdn_A Adenylate kinase; phosp 96.6 0.0016 5.5E-08 63.7 5.3 31 223-253 20-50 (201)
318 2c95_A Adenylate kinase 1; tra 96.6 0.0015 5E-08 63.4 4.8 31 223-253 9-39 (196)
319 3tui_C Methionine import ATP-b 96.6 0.0029 1E-07 67.6 7.5 29 493-521 51-79 (366)
320 3lw7_A Adenylate kinase relate 96.6 0.0014 4.8E-08 62.1 4.5 28 225-253 3-30 (179)
321 3t61_A Gluconokinase; PSI-biol 96.6 0.0014 4.9E-08 64.1 4.7 31 223-253 18-48 (202)
322 2ewv_A Twitching motility prot 96.6 0.0016 5.5E-08 70.4 5.5 78 488-565 128-219 (372)
323 1tev_A UMP-CMP kinase; ploop, 96.6 0.0016 5.5E-08 63.0 5.0 30 223-252 3-32 (196)
324 3e1s_A Exodeoxyribonuclease V, 96.6 0.0016 5.6E-08 74.5 5.6 32 223-254 204-238 (574)
325 1jr3_D DNA polymerase III, del 96.6 0.012 4E-07 62.7 12.1 141 222-389 17-175 (343)
326 3e1s_A Exodeoxyribonuclease V, 96.6 0.0013 4.4E-08 75.4 4.7 97 497-609 205-317 (574)
327 2zts_A Putative uncharacterize 96.6 0.0033 1.1E-07 63.4 7.2 38 492-529 26-67 (251)
328 2pez_A Bifunctional 3'-phospho 96.6 0.0021 7.2E-08 61.5 5.4 36 223-258 5-43 (179)
329 2it1_A 362AA long hypothetical 96.5 0.0038 1.3E-07 66.9 7.8 29 220-248 26-54 (362)
330 2yyz_A Sugar ABC transporter, 96.5 0.0035 1.2E-07 67.1 7.5 28 220-247 26-53 (359)
331 2iyv_A Shikimate kinase, SK; t 96.5 0.0017 5.8E-08 62.5 4.6 29 498-526 4-32 (184)
332 3crm_A TRNA delta(2)-isopenten 96.5 0.0041 1.4E-07 65.3 7.7 35 224-258 6-40 (323)
333 1zd8_A GTP:AMP phosphotransfer 96.5 0.0017 5.8E-08 65.0 4.6 32 222-253 6-37 (227)
334 3umf_A Adenylate kinase; rossm 96.5 0.0021 7.3E-08 63.7 5.3 39 221-261 27-65 (217)
335 1ly1_A Polynucleotide kinase; 96.5 0.0012 4.2E-08 63.0 3.5 26 224-249 3-29 (181)
336 2vli_A Antibiotic resistance p 96.5 0.0012 4.1E-08 63.3 3.4 30 223-252 5-34 (183)
337 1kht_A Adenylate kinase; phosp 96.5 0.0017 5.7E-08 62.7 4.4 25 224-248 4-28 (192)
338 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0039 1.3E-07 63.8 7.4 37 497-533 5-44 (260)
339 1zuh_A Shikimate kinase; alpha 96.5 0.0017 5.7E-08 61.5 4.3 30 497-526 8-37 (168)
340 1qf9_A UMP/CMP kinase, protein 96.5 0.0022 7.7E-08 61.8 5.2 31 223-253 6-36 (194)
341 2r8r_A Sensor protein; KDPD, P 96.5 0.025 8.6E-07 56.0 12.7 33 497-529 7-42 (228)
342 2ze6_A Isopentenyl transferase 96.5 0.0016 5.6E-08 66.3 4.3 31 499-529 4-34 (253)
343 1z47_A CYSA, putative ABC-tran 96.5 0.0032 1.1E-07 67.3 6.6 28 221-248 39-66 (355)
344 1z47_A CYSA, putative ABC-tran 96.5 0.0033 1.1E-07 67.1 6.8 28 494-521 39-66 (355)
345 1ak2_A Adenylate kinase isoenz 96.5 0.0024 8.3E-08 64.1 5.4 31 223-253 16-46 (233)
346 2yyz_A Sugar ABC transporter, 96.5 0.0036 1.2E-07 67.0 7.0 28 494-521 27-54 (359)
347 3umf_A Adenylate kinase; rossm 96.5 0.0016 5.4E-08 64.7 3.9 40 494-535 27-66 (217)
348 2bwj_A Adenylate kinase 5; pho 96.5 0.0021 7.3E-08 62.4 4.8 31 223-253 12-42 (199)
349 2pt5_A Shikimate kinase, SK; a 96.5 0.0021 7.1E-08 60.7 4.6 29 225-253 2-30 (168)
350 3dm5_A SRP54, signal recogniti 96.5 0.0089 3E-07 65.5 10.1 71 495-565 99-192 (443)
351 3tlx_A Adenylate kinase 2; str 96.5 0.0023 8E-08 64.8 5.2 32 222-253 28-59 (243)
352 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0025 8.4E-08 67.7 5.6 72 495-566 170-251 (330)
353 1aky_A Adenylate kinase; ATP:A 96.4 0.002 6.8E-08 64.1 4.6 31 496-526 4-34 (220)
354 3nwj_A ATSK2; P loop, shikimat 96.4 0.0016 5.5E-08 66.2 3.9 31 223-253 48-78 (250)
355 3fb4_A Adenylate kinase; psych 96.4 0.002 6.9E-08 63.7 4.6 29 225-253 2-30 (216)
356 3dl0_A Adenylate kinase; phosp 96.4 0.0019 6.6E-08 63.9 4.4 30 225-254 2-31 (216)
357 2cdn_A Adenylate kinase; phosp 96.4 0.0023 7.7E-08 62.6 4.8 31 497-527 21-51 (201)
358 1v43_A Sugar-binding transport 96.4 0.0033 1.1E-07 67.6 6.4 108 490-609 31-201 (372)
359 2zts_A Putative uncharacterize 96.4 0.0064 2.2E-07 61.2 8.3 37 219-255 26-66 (251)
360 1zak_A Adenylate kinase; ATP:A 96.4 0.0019 6.3E-08 64.4 4.1 29 223-251 5-33 (222)
361 1gvn_B Zeta; postsegregational 96.4 0.0023 7.9E-08 66.6 4.9 37 496-532 33-69 (287)
362 1ukz_A Uridylate kinase; trans 96.4 0.0026 9E-08 62.2 5.0 31 223-253 15-45 (203)
363 3sr0_A Adenylate kinase; phosp 96.4 0.0021 7.1E-08 63.4 4.2 34 499-534 3-36 (206)
364 3lw7_A Adenylate kinase relate 96.4 0.0021 7.1E-08 60.9 4.0 29 498-527 3-31 (179)
365 4eun_A Thermoresistant glucoki 96.4 0.0024 8.4E-08 62.4 4.6 36 495-532 28-63 (200)
366 1e6c_A Shikimate kinase; phosp 96.4 0.0023 7.8E-08 60.7 4.2 29 498-526 4-32 (173)
367 3sr0_A Adenylate kinase; phosp 96.4 0.0026 8.8E-08 62.7 4.7 34 225-260 2-35 (206)
368 2q6t_A DNAB replication FORK h 96.3 0.014 4.8E-07 64.6 11.2 38 219-256 196-237 (444)
369 3cm0_A Adenylate kinase; ATP-b 96.3 0.0021 7.2E-08 61.8 4.0 29 497-525 5-33 (186)
370 2c95_A Adenylate kinase 1; tra 96.3 0.0023 7.9E-08 62.0 4.3 32 496-527 9-40 (196)
371 3t61_A Gluconokinase; PSI-biol 96.3 0.0028 9.6E-08 62.0 4.9 31 496-526 18-48 (202)
372 2a5y_B CED-4; apoptosis; HET: 96.3 0.019 6.6E-07 65.4 12.5 165 466-667 132-330 (549)
373 1tev_A UMP-CMP kinase; ploop, 96.3 0.0023 7.8E-08 61.9 4.1 30 497-526 4-33 (196)
374 1cke_A CK, MSSA, protein (cyti 96.3 0.003 1E-07 62.8 5.1 29 224-252 6-34 (227)
375 3be4_A Adenylate kinase; malar 96.3 0.0029 9.9E-08 62.8 4.9 31 224-254 6-36 (217)
376 2gxq_A Heat resistant RNA depe 96.3 0.018 6.3E-07 56.0 10.7 19 497-515 39-57 (207)
377 3gfo_A Cobalt import ATP-bindi 96.3 0.00018 6.2E-09 74.3 -4.1 39 221-259 32-72 (275)
378 2vli_A Antibiotic resistance p 96.3 0.0021 7.1E-08 61.6 3.6 29 497-525 6-34 (183)
379 3uie_A Adenylyl-sulfate kinase 96.3 0.0051 1.8E-07 60.1 6.5 39 494-532 23-64 (200)
380 1zd8_A GTP:AMP phosphotransfer 96.3 0.0023 7.7E-08 64.0 4.0 31 496-526 7-37 (227)
381 3bh0_A DNAB-like replicative h 96.3 0.019 6.5E-07 60.4 11.3 38 219-256 64-104 (315)
382 1nks_A Adenylate kinase; therm 96.3 0.0024 8.3E-08 61.6 4.0 32 225-256 3-37 (194)
383 1knq_A Gluconate kinase; ALFA/ 96.3 0.0027 9.2E-08 60.5 4.2 35 496-532 8-42 (175)
384 1ak2_A Adenylate kinase isoenz 96.3 0.003 1E-07 63.4 4.8 31 497-527 17-47 (233)
385 2fz4_A DNA repair protein RAD2 96.3 0.008 2.7E-07 60.5 7.9 36 498-533 110-146 (237)
386 3d31_A Sulfate/molybdate ABC t 96.3 0.0044 1.5E-07 66.1 6.2 108 490-609 20-187 (348)
387 1qf9_A UMP/CMP kinase, protein 96.2 0.0028 9.6E-08 61.1 4.3 31 497-527 7-37 (194)
388 2px0_A Flagellar biosynthesis 96.2 0.015 5.2E-07 60.6 10.1 26 495-520 104-129 (296)
389 1vma_A Cell division protein F 96.2 0.009 3.1E-07 62.5 8.3 36 221-256 102-140 (306)
390 2bbw_A Adenylate kinase 4, AK4 96.2 0.0032 1.1E-07 63.7 4.8 29 223-251 27-55 (246)
391 2jaq_A Deoxyguanosine kinase; 96.2 0.003 1E-07 61.5 4.5 29 225-253 2-30 (205)
392 2r6a_A DNAB helicase, replicat 96.2 0.0046 1.6E-07 68.8 6.4 38 492-529 199-240 (454)
393 3dm5_A SRP54, signal recogniti 96.2 0.019 6.5E-07 62.9 11.1 70 223-292 100-192 (443)
394 3be4_A Adenylate kinase; malar 96.2 0.0023 8E-08 63.5 3.7 31 497-527 6-36 (217)
395 1kht_A Adenylate kinase; phosp 96.2 0.0026 8.8E-08 61.4 3.9 25 497-521 4-28 (192)
396 3dl0_A Adenylate kinase; phosp 96.2 0.0028 9.7E-08 62.6 4.2 29 499-527 3-31 (216)
397 2ga8_A Hypothetical 39.9 kDa p 96.2 0.002 6.7E-08 68.4 3.1 30 497-526 25-54 (359)
398 1htw_A HI0065; nucleotide-bind 96.2 0.0033 1.1E-07 59.1 4.4 29 219-247 29-57 (158)
399 2pbr_A DTMP kinase, thymidylat 96.2 0.0037 1.3E-07 60.4 4.9 31 225-255 2-35 (195)
400 2pt5_A Shikimate kinase, SK; a 96.2 0.0032 1.1E-07 59.4 4.3 29 498-526 2-30 (168)
401 1w4r_A Thymidine kinase; type 96.2 0.0082 2.8E-07 58.0 7.1 67 498-567 22-103 (195)
402 3fb4_A Adenylate kinase; psych 96.2 0.0031 1E-07 62.4 4.3 29 499-527 3-31 (216)
403 1e4v_A Adenylate kinase; trans 96.2 0.0032 1.1E-07 62.3 4.3 29 225-253 2-30 (214)
404 2xb4_A Adenylate kinase; ATP-b 96.1 0.0038 1.3E-07 62.3 4.7 28 225-252 2-29 (223)
405 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.0013 4.5E-08 69.8 1.4 71 222-292 170-250 (330)
406 1ly1_A Polynucleotide kinase; 96.1 0.0022 7.6E-08 61.1 2.9 25 498-522 4-29 (181)
407 3tlx_A Adenylate kinase 2; str 96.1 0.0035 1.2E-07 63.5 4.5 32 495-526 28-59 (243)
408 2bwj_A Adenylate kinase 5; pho 96.1 0.0033 1.1E-07 61.1 4.0 31 496-526 12-42 (199)
409 3r20_A Cytidylate kinase; stru 96.1 0.0047 1.6E-07 61.9 5.1 30 223-252 9-38 (233)
410 2fz4_A DNA repair protein RAD2 96.1 0.012 4E-07 59.3 8.2 33 224-256 109-141 (237)
411 2pez_A Bifunctional 3'-phospho 96.1 0.0035 1.2E-07 60.0 4.0 36 496-531 5-43 (179)
412 1zak_A Adenylate kinase; ATP:A 96.1 0.0029 9.8E-08 63.0 3.5 31 496-526 5-35 (222)
413 3tr0_A Guanylate kinase, GMP k 96.1 0.0037 1.2E-07 61.1 4.3 27 222-248 6-32 (205)
414 2it1_A 362AA long hypothetical 96.1 0.0071 2.4E-07 64.8 6.8 28 494-521 27-54 (362)
415 1kgd_A CASK, peripheral plasma 96.1 0.0038 1.3E-07 59.9 4.3 26 223-248 5-30 (180)
416 3thx_B DNA mismatch repair pro 96.1 0.0074 2.5E-07 72.3 7.5 111 493-614 670-800 (918)
417 2z0h_A DTMP kinase, thymidylat 96.1 0.0047 1.6E-07 59.8 5.0 30 226-255 3-35 (197)
418 3nh6_A ATP-binding cassette SU 96.1 0.0075 2.6E-07 63.1 6.8 29 493-521 77-105 (306)
419 2if2_A Dephospho-COA kinase; a 96.1 0.0038 1.3E-07 61.0 4.2 28 225-253 3-30 (204)
420 1vma_A Cell division protein F 96.1 0.0074 2.5E-07 63.2 6.6 71 494-565 102-196 (306)
421 1ukz_A Uridylate kinase; trans 96.1 0.0043 1.5E-07 60.6 4.6 31 497-527 16-46 (203)
422 1cke_A CK, MSSA, protein (cyti 96.0 0.0044 1.5E-07 61.6 4.7 29 497-525 6-34 (227)
423 3kl4_A SRP54, signal recogniti 96.0 0.011 3.9E-07 64.7 8.2 70 496-565 97-189 (433)
424 2j41_A Guanylate kinase; GMP, 96.0 0.0038 1.3E-07 61.0 4.0 27 221-247 4-30 (207)
425 1ex7_A Guanylate kinase; subst 96.0 0.0047 1.6E-07 59.7 4.5 28 224-251 2-29 (186)
426 4e22_A Cytidylate kinase; P-lo 96.0 0.0053 1.8E-07 62.5 5.1 30 223-252 27-56 (252)
427 2v54_A DTMP kinase, thymidylat 96.0 0.0047 1.6E-07 60.3 4.5 33 223-255 4-37 (204)
428 2qor_A Guanylate kinase; phosp 96.0 0.0044 1.5E-07 60.8 4.2 28 221-248 10-37 (204)
429 1z6g_A Guanylate kinase; struc 96.0 0.0038 1.3E-07 62.1 3.8 28 221-248 21-48 (218)
430 3thx_B DNA mismatch repair pro 96.0 0.015 5E-07 69.8 9.4 25 222-246 672-696 (918)
431 1jjv_A Dephospho-COA kinase; P 95.9 0.0038 1.3E-07 61.2 3.6 32 225-259 4-35 (206)
432 2plr_A DTMP kinase, probable t 95.9 0.0047 1.6E-07 60.6 4.2 27 223-249 4-30 (213)
433 2grj_A Dephospho-COA kinase; T 95.9 0.0053 1.8E-07 59.7 4.5 29 225-253 14-42 (192)
434 4a1f_A DNAB helicase, replicat 95.9 0.069 2.4E-06 56.5 13.4 38 219-256 42-82 (338)
435 1e4v_A Adenylate kinase; trans 95.9 0.0043 1.5E-07 61.3 3.9 29 499-527 3-31 (214)
436 3ake_A Cytidylate kinase; CMP 95.9 0.005 1.7E-07 60.2 4.3 29 225-253 4-32 (208)
437 2bbw_A Adenylate kinase 4, AK4 95.9 0.0049 1.7E-07 62.4 4.3 30 496-525 27-56 (246)
438 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0052 1.8E-07 65.2 4.5 30 224-253 25-54 (359)
439 3nwj_A ATSK2; P loop, shikimat 95.9 0.0037 1.3E-07 63.5 3.3 31 496-526 48-78 (250)
440 1znw_A Guanylate kinase, GMP k 95.9 0.0048 1.6E-07 60.7 4.0 30 219-248 16-45 (207)
441 2v54_A DTMP kinase, thymidylat 95.9 0.0059 2E-07 59.5 4.6 33 496-528 4-37 (204)
442 2yvu_A Probable adenylyl-sulfa 95.9 0.008 2.7E-07 57.8 5.5 36 222-257 12-50 (186)
443 2xb4_A Adenylate kinase; ATP-b 95.9 0.0051 1.7E-07 61.3 4.2 28 499-526 3-30 (223)
444 2jaq_A Deoxyguanosine kinase; 95.9 0.0048 1.6E-07 60.1 4.0 28 499-526 3-30 (205)
445 2xau_A PRE-mRNA-splicing facto 95.9 0.017 5.9E-07 68.4 9.4 61 457-519 70-132 (773)
446 2v9p_A Replication protein E1; 95.9 0.0057 1.9E-07 63.9 4.6 32 218-249 121-152 (305)
447 1lvg_A Guanylate kinase, GMP k 95.8 0.0046 1.6E-07 60.4 3.7 27 222-248 3-29 (198)
448 1m7g_A Adenylylsulfate kinase; 95.8 0.0067 2.3E-07 59.8 4.9 39 221-259 23-65 (211)
449 2pl3_A Probable ATP-dependent 95.8 0.047 1.6E-06 54.5 11.3 54 459-514 25-80 (236)
450 3kl4_A SRP54, signal recogniti 95.8 0.02 6.7E-07 62.8 9.0 71 223-293 97-190 (433)
451 2oap_1 GSPE-2, type II secreti 95.8 0.0074 2.5E-07 67.9 5.7 71 495-565 259-343 (511)
452 2pbr_A DTMP kinase, thymidylat 95.8 0.0066 2.3E-07 58.5 4.6 30 499-528 3-35 (195)
453 3r20_A Cytidylate kinase; stru 95.8 0.0064 2.2E-07 60.9 4.5 31 496-526 9-39 (233)
454 3tau_A Guanylate kinase, GMP k 95.8 0.0051 1.7E-07 60.6 3.7 27 223-249 8-34 (208)
455 2oap_1 GSPE-2, type II secreti 95.8 0.0047 1.6E-07 69.5 3.8 70 222-291 259-342 (511)
456 2bdt_A BH3686; alpha-beta prot 95.7 0.0069 2.4E-07 58.4 4.5 34 225-259 4-37 (189)
457 3c8u_A Fructokinase; YP_612366 95.7 0.0057 2E-07 60.2 3.9 28 221-248 20-47 (208)
458 3foz_A TRNA delta(2)-isopenten 95.7 0.0046 1.6E-07 64.3 3.2 38 496-533 10-47 (316)
459 2z0h_A DTMP kinase, thymidylat 95.7 0.0077 2.6E-07 58.3 4.7 31 499-529 3-36 (197)
460 1uf9_A TT1252 protein; P-loop, 95.7 0.0063 2.1E-07 59.2 4.0 34 223-259 8-41 (203)
461 2if2_A Dephospho-COA kinase; a 95.7 0.0057 1.9E-07 59.8 3.7 28 498-526 3-30 (204)
462 1p9r_A General secretion pathw 95.7 0.02 6.7E-07 62.6 8.3 68 224-292 168-246 (418)
463 3foz_A TRNA delta(2)-isopenten 95.7 0.0071 2.4E-07 62.8 4.4 37 223-259 10-46 (316)
464 1nks_A Adenylate kinase; therm 95.7 0.0041 1.4E-07 60.0 2.5 34 498-531 3-39 (194)
465 3a00_A Guanylate kinase, GMP k 95.7 0.006 2E-07 58.9 3.6 25 224-248 2-26 (186)
466 1jjv_A Dephospho-COA kinase; P 95.7 0.0063 2.1E-07 59.6 3.8 27 498-525 4-30 (206)
467 1g5t_A COB(I)alamin adenosyltr 95.6 0.032 1.1E-06 53.9 8.7 108 224-344 29-169 (196)
468 3ney_A 55 kDa erythrocyte memb 95.6 0.0079 2.7E-07 58.6 4.4 27 222-248 18-44 (197)
469 3asz_A Uridine kinase; cytidin 95.6 0.0067 2.3E-07 59.6 3.9 27 222-248 5-31 (211)
470 1w36_D RECD, exodeoxyribonucle 95.6 0.016 5.6E-07 66.7 7.7 24 497-520 165-188 (608)
471 2q6t_A DNAB replication FORK h 95.6 0.014 4.8E-07 64.6 6.8 38 492-529 196-237 (444)
472 2jeo_A Uridine-cytidine kinase 95.6 0.0073 2.5E-07 61.1 4.2 28 222-249 24-51 (245)
473 3thx_A DNA mismatch repair pro 95.6 0.032 1.1E-06 67.1 10.2 22 224-245 663-684 (934)
474 2wwf_A Thymidilate kinase, put 95.6 0.006 2E-07 59.9 3.4 27 223-249 10-36 (212)
475 1q3t_A Cytidylate kinase; nucl 95.6 0.01 3.5E-07 59.6 5.2 33 221-253 14-46 (236)
476 2qt1_A Nicotinamide riboside k 95.6 0.0059 2E-07 59.9 3.3 26 222-247 20-45 (207)
477 1vht_A Dephospho-COA kinase; s 95.6 0.0097 3.3E-07 58.8 4.8 30 223-253 4-33 (218)
478 3bh0_A DNAB-like replicative h 95.5 0.029 9.8E-07 59.0 8.7 38 492-529 64-104 (315)
479 1nn5_A Similar to deoxythymidy 95.5 0.0064 2.2E-07 59.8 3.4 26 223-248 9-34 (215)
480 1uj2_A Uridine-cytidine kinase 95.5 0.011 3.9E-07 59.9 5.4 38 223-260 22-67 (252)
481 3a8t_A Adenylate isopentenyltr 95.5 0.0059 2E-07 64.4 3.2 34 224-257 41-74 (339)
482 2r8r_A Sensor protein; KDPD, P 95.5 0.018 6.2E-07 57.0 6.4 32 224-255 7-41 (228)
483 4e22_A Cytidylate kinase; P-lo 95.5 0.0098 3.4E-07 60.4 4.7 30 496-525 27-56 (252)
484 1htw_A HI0065; nucleotide-bind 95.5 0.0077 2.6E-07 56.5 3.5 29 492-520 29-57 (158)
485 4f4c_A Multidrug resistance pr 95.5 0.035 1.2E-06 69.8 10.6 38 492-529 440-479 (1321)
486 3bgw_A DNAB-like replicative h 95.5 0.072 2.5E-06 58.8 11.9 38 219-256 193-233 (444)
487 3ake_A Cytidylate kinase; CMP 95.4 0.0094 3.2E-07 58.2 4.3 29 498-526 4-32 (208)
488 1hv8_A Putative ATP-dependent 95.4 0.049 1.7E-06 57.9 10.2 60 459-519 6-67 (367)
489 3thx_A DNA mismatch repair pro 95.4 0.02 7E-07 68.7 7.8 24 495-518 661-684 (934)
490 3gd7_A Fusion complex of cysti 95.4 0.04 1.4E-06 59.6 9.4 102 490-604 41-210 (390)
491 2j41_A Guanylate kinase; GMP, 95.4 0.0071 2.4E-07 59.1 3.2 27 494-520 4-30 (207)
492 2grj_A Dephospho-COA kinase; T 95.4 0.0098 3.3E-07 57.8 4.2 29 498-526 14-42 (192)
493 2px0_A Flagellar biosynthesis 95.4 0.038 1.3E-06 57.6 8.8 35 222-256 104-142 (296)
494 1t6n_A Probable ATP-dependent 95.4 0.1 3.5E-06 51.2 11.8 60 459-520 14-75 (220)
495 1s96_A Guanylate kinase, GMP k 95.4 0.0099 3.4E-07 59.1 4.2 28 221-248 14-41 (219)
496 1kgd_A CASK, peripheral plasma 95.4 0.0091 3.1E-07 57.2 3.7 26 496-521 5-30 (180)
497 1nn5_A Similar to deoxythymidy 95.4 0.0044 1.5E-07 61.0 1.4 28 495-522 8-35 (215)
498 3exa_A TRNA delta(2)-isopenten 95.3 0.0096 3.3E-07 62.0 4.0 36 224-259 4-39 (322)
499 3tr0_A Guanylate kinase, GMP k 95.3 0.0091 3.1E-07 58.2 3.7 34 495-530 6-39 (205)
500 2wwf_A Thymidilate kinase, put 95.3 0.0044 1.5E-07 60.9 1.4 28 496-523 10-37 (212)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.2e-132 Score=1164.52 Aligned_cols=748 Identities=71% Similarity=1.187 Sum_probs=627.7
Q ss_pred ccccCCCCCeEEEecccCCCCcEEEECHhhHhhcCCCCCCeEEEeecCcceEEEEEEeCCCCCCCeEEEcHHHHhhcCCC
Q 044198 2 EFRKAKSPNRLIVEEALQDDNSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDDDTCDASKIRMNKVVRSNLRLR 81 (772)
Q Consensus 2 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~ 81 (772)
.++++|.||+|+|++|.++|+++|+|||++|.+||+.+||+|.|+|++++.+++|++++++++.+.|+||+.+|+|+|++
T Consensus 16 ~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~v~ 95 (806)
T 3cf2_A 16 ILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVR 95 (806)
T ss_dssp -----CCTTEEECBCCSSCCTTEEEECHHHHHHTTCCSSCEEEEECGGGCBCCEEEEECTTSBTTBCEECHHHHHTTTCC
T ss_pred hhhccCCCceEEEccCCCCCCCEEEECHHHHHHcCCCCCCEEEEEcCCCceEEEEEcCCCCCCCCEEEeCHHHHHhcCCC
Confidence 36789999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCCceeEeecccccccCcchhhHHHHHHHhhhcCCcCccCCcEEEEecCceeEEEEEEEecCCceEE
Q 044198 82 LGDLVSVKICNDVVNATKMHVLPLHDTIEGITGNLFDVYLKPYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGEYCH 161 (772)
Q Consensus 82 ~~~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~ 161 (772)
+||.|+|+++.+++.+++|++.|+..+..++....+..+++.||...++||..||.|.+.+.+..+.|+|++++|.++++
T Consensus 96 ~gd~V~v~~~~~~~~a~~v~l~p~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~gd~~~v~~~~~~~~f~V~~~~P~~~~~ 175 (806)
T 3cf2_A 96 LGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCI 175 (806)
T ss_dssp TTCEEEEEECCCCCBCSBEEEEEBTTTSTTCCSCHHHHTHHHHHTTTCCEEETTCEEEECCTTSCEEEEEEEESSSSEEE
T ss_pred CCCEEEEEECCCCCcCCEEEEeccccchhccchhHHHHHHHHHHHhcCCcccCCCEEEEecCCcEEEEEEEEEeCCCCeE
Confidence 99999999987889999999999988777777778888999999888899999999999988889999999999999999
Q ss_pred eCCCceEEecCCCCcccc-cCCCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHH
Q 044198 162 ITPKTEIFCEGEPLKRED-EDRLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLA 240 (772)
Q Consensus 162 ~~~~t~i~~~~~~~~~~~-~~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~La 240 (772)
++++|.|.+.+.+..... ....++++|+||||+++++++|++++.+|+.+|++|+.+|+.+++|||||||||||||+||
T Consensus 176 v~~~T~i~~~~~~~~~~~~~~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 176 VAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCTTSBCCBCSCCBCCCTTSCCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred ECCCcEEEEeccccCcccccccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 999999999877765432 3356889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcc
Q 044198 241 RAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGM 320 (772)
Q Consensus 241 r~la~~l~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~ 320 (772)
+++|++++.+++.++++++.+++.|+++..++.+|+.|+.+.||||||||+|.++++++...++..++++++|+.+|+++
T Consensus 256 raiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~ 335 (806)
T 3cf2_A 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL 335 (806)
T ss_dssp HHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHC
T ss_pred HHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999988877888899999999999999
Q ss_pred cccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHH
Q 044198 321 KSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALC 400 (772)
Q Consensus 321 ~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~ 400 (772)
..+.+|+||+|||+++.||++++|+|||+++|+++.|+.++|.+||+.+++++.+..++++..+|..|+||+++||..+|
T Consensus 336 ~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv 415 (806)
T 3cf2_A 336 KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415 (806)
T ss_dssp CGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHH
T ss_pred cccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccccccccchhhHhhhhhhhccchhhhhhhhhcCcccchhhhcccCCcccccccchHHHHHHHhhhccc
Q 044198 401 TEGAMQCIREKMDLIDLEEDTIDAEVLSSMYVTNENLNAAVAITSPSALREIAVEVPNVRWADIGGLDTVKRELQETVQY 480 (772)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~v~~~~i~g~~~~k~~l~~~i~~ 480 (772)
++|++.++++..............+......++.+||..|+..+.|+.+++...+.|+++|++|+|++++|+.|.+.+.+
T Consensus 416 ~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~ 495 (806)
T 3cf2_A 416 SEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQY 495 (806)
T ss_dssp HHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTT
T ss_pred HHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHh
Confidence 99999999888776666555555666677889999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEE
Q 044198 481 PVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLF 560 (772)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilf 560 (772)
|+++++.|.++|+++++|+|||||||||||++|+++|++++.+|+.+++++++++|+|+++++++.+|+.|++.+|||||
T Consensus 496 p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~Iif 575 (806)
T 3cf2_A 496 PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLF 575 (806)
T ss_dssp TTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEE
T ss_pred hhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCchhhhhccCCCCC-CCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHH
Q 044198 561 FDELDSIAIQRGSSVG-DGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQ 639 (772)
Q Consensus 561 iDEid~l~~~r~~~~~-~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~ 639 (772)
|||||++++.|+.+.+ +++..+|++++||++|||+....+|+||+|||+|+.||||++||||||++|+||+||.++|.+
T Consensus 576 iDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~ 655 (806)
T 3cf2_A 576 FDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 655 (806)
T ss_dssp CSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHH
T ss_pred chhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHH
Confidence 9999999999975432 344588999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC--C----CCcccccccccHHH
Q 044198 640 IFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQREN--P----EGAAGEVAEIKKEH 713 (772)
Q Consensus 640 Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~--~----~~~~~~~~~i~~~~ 713 (772)
||+.++++.++..++|++.||+.|+||||+||.++|++|++.|+++.+........... + ....+..++|+++|
T Consensus 656 il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 735 (806)
T 3cf2_A 656 ILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDH 735 (806)
T ss_dssp TTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----C
T ss_pred HHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHH
Confidence 99999999999999999999999999999999999999999999998765432221110 0 01123356799999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHhhccCCCCh
Q 044198 714 FEESMKYARRSVSDSDVRKYQAFANTLQQSRGFGSS 749 (772)
Q Consensus 714 ~~~al~~~~~s~~~~~~~~y~~~~~~~~~~~~~~~~ 749 (772)
|++|+++++||+|++++++|++|+++|+++|+||+.
T Consensus 736 f~~al~~~~pSvs~~~l~~y~~~~~~f~~~~~~g~~ 771 (806)
T 3cf2_A 736 FEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSF 771 (806)
T ss_dssp CTTTC---------------CCCC------------
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCcccc
Confidence 999999999999999999999999999999999874
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=5.5e-104 Score=945.07 Aligned_cols=746 Identities=72% Similarity=1.196 Sum_probs=637.5
Q ss_pred cccCCCCCeEEEecccCCCCcEEEECHhhHhhcCCCCCCeEEEeecCcceEEEEEEeCCCCCCCeEEEcHHHHhhcCCCC
Q 044198 3 FRKAKSPNRLIVEEALQDDNSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDDDTCDASKIRMNKVVRSNLRLRL 82 (772)
Q Consensus 3 ~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~ 82 (772)
++|.|.||+|+|++|.++|.++|+|+|++|.+||+.+||+|.|+|++++.++|.+|+++.++.+.|+|++.+|.|+|+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (806)
T 1ypw_A 17 LKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRL 96 (806)
T ss_dssp CCCCCCTTEEEEECCSSCCSSCEEECHHHHHHHTCCTTCEEEEEETTTEECCEEEEECSSSCTTEEECCHHHHTTTTCCT
T ss_pred HhccCCCceEEEccCcCCcCCEEEECHHHHHHcCCCCCCEEEEecCccCcEEEEEecCCCCCCCeEEecHHHHhhcCCCC
Confidence 68999999999999999999999999999999999999999999998777889999988899999999999999999999
Q ss_pred CCeEEEEEccCCCCCceeEeecccccccCcchhhHHHHHHHhhhcCCcCccCCcEEEEecCceeEEEEEEEecCCceEEe
Q 044198 83 GDLVSVKICNDVVNATKMHVLPLHDTIEGITGNLFDVYLKPYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGEYCHI 162 (772)
Q Consensus 83 ~~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~~ 162 (772)
||.|+|+++.+++.+++|++.|...++.++.+.+++.+++++|...++||.+|+++.+...+..+.|+|++++|.+++++
T Consensus 97 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~p~~~~~v 176 (806)
T 1ypw_A 97 GDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIV 176 (806)
T ss_dssp TCEEEEEECTTCCBCSEEEEEECTTTSSSCCSCCTTTTTGGGTTTTCCBCCTTCEEEECCSSSCEEEEEEEETTTTCCBC
T ss_pred CCEEEEEECCCCCcCcEEEEeCCccchhhcccchHHHHHHHHhccCCccccCCCEEEecCCCcceEEEEEeccCCCCcee
Confidence 99999999767889999999999877666666667779999998778999999999998888899999999999999999
Q ss_pred CCCceEEecCCCCcccc-cCCCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHH
Q 044198 163 TPKTEIFCEGEPLKRED-EDRLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLAR 241 (772)
Q Consensus 163 ~~~t~i~~~~~~~~~~~-~~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar 241 (772)
+++|.+.+...+..+.. ....+.++|++|+|+++++++|++++.+|+.++++++.+++.++.++||+||||||||+||+
T Consensus 177 ~~~t~~~~~~~~~~~~~~~~~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar 256 (806)
T 1ypw_A 177 APDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CSSSEEEECSCCCCCCTTSCCSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHH
T ss_pred cCCeEEEecCccccchhhhcccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHH
Confidence 99999999776665432 23457899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc
Q 044198 242 AIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK 321 (772)
Q Consensus 242 ~la~~l~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~ 321 (772)
++|++++.+++.+++.++.+.+.++.+..++.+|+.+..+.|+++|+||+|.++++++...++...++..+|++++++..
T Consensus 257 ala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~ 336 (806)
T 1ypw_A 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK 336 (806)
T ss_dssp HHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999998887777888999999999999999
Q ss_pred ccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHH
Q 044198 322 SRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCT 401 (772)
Q Consensus 322 ~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~ 401 (772)
++..+++|++||+++.+|+++++++||+..+.++.|+.++|.+||+.+...+.+..+.++..++..++||+++|+..++.
T Consensus 337 ~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ 416 (806)
T 1ypw_A 337 QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (806)
T ss_dssp TTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHH
T ss_pred ccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888889999999999999999999999
Q ss_pred HHHHHhhhhhccccccccchhhHhhhhhhhccchhhhhhhhhcCcccchhhhcccCCcccccccchHHHHHHHhhhcccc
Q 044198 402 EGAMQCIREKMDLIDLEEDTIDAEVLSSMYVTNENLNAAVAITSPSALREIAVEVPNVRWADIGGLDTVKRELQETVQYP 481 (772)
Q Consensus 402 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~ 481 (772)
+++..++++..............+......++.+++..++....|+..++.....+.+.|++++|++.+|+.+.+.+.++
T Consensus 417 ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~ 496 (806)
T 1ypw_A 417 EAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYP 496 (806)
T ss_dssp HHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSS
T ss_pred HHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhhhHHHHHHhh
Confidence 99988887765554444333444445566788899999999999998888888899999999999999999999999999
Q ss_pred CCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEE
Q 044198 482 VEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFF 561 (772)
Q Consensus 482 ~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfi 561 (772)
+.+++.+..+++.++.++||+||||||||+||+++|++++.+|+.++++++.++|+|++++.++.+|+.|+...|||+||
T Consensus 497 ~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~i 576 (806)
T 1ypw_A 497 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFF 576 (806)
T ss_dssp SSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCC
T ss_pred hhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhhhccCCCCCC-CCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHH
Q 044198 562 DELDSIAIQRGSSVGD-GGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQI 640 (772)
Q Consensus 562 DEid~l~~~r~~~~~~-~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~I 640 (772)
||||+++..|+...++ .+...+++++||++||++....+++||+|||+|+.||+|++|||||++.|+|++|+.++|.+|
T Consensus 577 DEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~I 656 (806)
T 1ypw_A 577 DELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAI 656 (806)
T ss_dssp SSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHH
T ss_pred EChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHH
Confidence 9999999888653222 223789999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCC--CC----CCcccccccccHHHH
Q 044198 641 FKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRE--NP----EGAAGEVAEIKKEHF 714 (772)
Q Consensus 641 l~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~--~~----~~~~~~~~~i~~~~~ 714 (772)
|+.++++.++..+++++.|++.+.||||+||.++|++|++.|+++.+...+...... .. ....+....|+.+||
T Consensus 657 l~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f 736 (806)
T 1ypw_A 657 LKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHF 736 (806)
T ss_dssp TTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC------------------------CCTTTTTTSS
T ss_pred HHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccCccCHHHH
Confidence 999999999999999999999999999999999999999999998765433211110 00 011123457999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHHhhccCCCC
Q 044198 715 EESMKYARRSVSDSDVRKYQAFANTLQQSRGFGS 748 (772)
Q Consensus 715 ~~al~~~~~s~~~~~~~~y~~~~~~~~~~~~~~~ 748 (772)
++|++.++||++++++++|++|.++|+++|+||+
T Consensus 737 ~~a~~~~~~svs~~~~~~ye~~~~~~~~~~~~g~ 770 (806)
T 1ypw_A 737 EEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS 770 (806)
T ss_dssp CCCCCC----------------------------
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHhhccCCc
Confidence 9999999999999999999999999999999986
No 3
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=3e-63 Score=559.80 Aligned_cols=467 Identities=68% Similarity=1.151 Sum_probs=415.2
Q ss_pred cccCCCCCeEEEecccCCCCcEEEECHhhHhhcCCCCCCeEEEeecCcceEEEEEEeCCCCCCCeEEEcHHHHhhcCCCC
Q 044198 3 FRKAKSPNRLIVEEALQDDNSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDDDTCDASKIRMNKVVRSNLRLRL 82 (772)
Q Consensus 3 ~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~ 82 (772)
++++|.||+|+|++|.++|+++|||||++|.+||+.+||+|.|+|++++.++||+||.++++++.|+||+.+|.|+|+++
T Consensus 17 ~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~l~~~~gd~v~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~ 96 (489)
T 3hu3_A 17 LKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRL 96 (489)
T ss_dssp CCCCCCTTEEEEECCTTCCTTEEEECHHHHHHHTCCTTCEEEEECSTTCEEEEEEEECTTSCTTEEECCHHHHHHTTCCT
T ss_pred hhcccCCCeeEEccCCCCcCCEEEECHHHHHHcCCCCCCEEEEecCccCcEEEEEeeCCCCCCCEEEecHHHHhhcCCCC
Confidence 67999999999999999999999999999999999999999999998889999999998899999999999999999999
Q ss_pred CCeEEEEEccCCCCCceeEeecccccccCcchhhHHHHHHHhhhcCCcCccCCcEEEEecCceeEEEEEEEecCCceEEe
Q 044198 83 GDLVSVKICNDVVNATKMHVLPLHDTIEGITGNLFDVYLKPYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGEYCHI 162 (772)
Q Consensus 83 ~~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~~ 162 (772)
||.|+|+++..++.+++|++.|+...+..+....++.+.+++.....+++..|+.+.+.+.++.+.|+++..+|...+.+
T Consensus 97 gd~v~v~~~~~~~~a~~v~~~~~~~av~a~~~ga~d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (489)
T 3hu3_A 97 GDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVETDPSPYCIV 176 (489)
T ss_dssp TCEEEEEECTTCCBCSEEEEEEBGGGSSSCCSCHHHHTHHHHHTTTCEEEETTCEEEEEETTEEEEEEEEEEESSSEEEE
T ss_pred CCEEEEEECCCCCccCEEEEcCCCcccccccchhHHHHhHHHHhhcCcccccCCEEEecCCCceEEEEEEeecCCCceEE
Confidence 99999999878999999999999876665555567888899888778889999999999888999999999999999999
Q ss_pred CCCceEEecCCCCcccc-cCCCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHH
Q 044198 163 TPKTEIFCEGEPLKRED-EDRLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLAR 241 (772)
Q Consensus 163 ~~~t~i~~~~~~~~~~~-~~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar 241 (772)
+++|.+.+.+.+..... ......++|++|+|+++++++|++++..|+.+++++..++..++.++||+||||||||++|+
T Consensus 177 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 177 APDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CTTCEEECCSSCBCHHHHHHHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEccCcccccccccccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHH
Confidence 99999998776654322 12346789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc
Q 044198 242 AIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK 321 (772)
Q Consensus 242 ~la~~l~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~ 321 (772)
+++++++.+|+.++|+++.+.+.|+.+..++.+|..+....|++|||||+|.++++++...++...+++.+|+.+|++..
T Consensus 257 aia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~ 336 (489)
T 3hu3_A 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK 336 (489)
T ss_dssp HHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999998877777888899999999999988
Q ss_pred ccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHH
Q 044198 322 SRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCT 401 (772)
Q Consensus 322 ~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~ 401 (772)
...++++|+|||+++.||++++++|||+..++++.|+.++|.+||+.+++.+.+..+.++..++..+.||+++|+..+|+
T Consensus 337 ~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 337 QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp TTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred cCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHhhhhhccccccccchhhHhhhhhhhccchhhhhhhhhcCcccchhhhcccCCcccccccchHH
Q 044198 402 EGAMQCIREKMDLIDLEEDTIDAEVLSSMYVTNENLNAAVAITSPSALREIAVEVPNVRWADIGGLDT 469 (772)
Q Consensus 402 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~v~~~~i~g~~~ 469 (772)
+|++.++++....+..+......+......++.+||..|+..+.|+.+++...+.|+++|+||||...
T Consensus 417 ~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 417 EAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp HHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC---------------
T ss_pred HHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCcc
Confidence 99999998877666555555555556677899999999999999999999999999999999999765
No 4
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-57 Score=487.34 Aligned_cols=273 Identities=37% Similarity=0.686 Sum_probs=245.7
Q ss_pred CcccchhhhcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcE
Q 044198 445 SPSALREIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANF 524 (772)
Q Consensus 445 ~ps~~~~~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~ 524 (772)
.|........+.|+++|+||||++++|++|++.+.+|+++++.|.++|+++++|+|||||||||||++|+|+|++++.+|
T Consensus 131 ~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f 210 (405)
T 4b4t_J 131 DPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF 210 (405)
T ss_dssp SCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE
T ss_pred CchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc
Confidence 45555556778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCC-CchhHHHHHHHHHhcCCCCCCcEEE
Q 044198 525 ISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDG-GGVDRIVNQLLTEMDGLSAKKTVFV 603 (772)
Q Consensus 525 i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~-~~~~~~~~~lL~~ld~~~~~~~v~v 603 (772)
+.++++++.++|+|++++.++.+|+.|+..+||||||||+|++++.|..+.+.. ....+++++||++|||+....+|+|
T Consensus 211 ~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~v 290 (405)
T 4b4t_J 211 IRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKI 290 (405)
T ss_dssp EEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEE
T ss_pred eEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEE
Confidence 999999999999999999999999999999999999999999999987643222 2367899999999999999999999
Q ss_pred EeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 044198 604 IGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAI 683 (772)
Q Consensus 604 i~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~ 683 (772)
|+|||+|+.||||++||||||++|+||+||.++|.+||+.+++++++..++|++.||+.|+|||||||.++|++|++.|+
T Consensus 291 IaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 291 IMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYAL 370 (405)
T ss_dssp EEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred EeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 044198 684 REEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSDVRKYQAF 736 (772)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~~~~~~y~~~ 736 (772)
++.. ..|+++||+.|++++.++..+..++.++.|
T Consensus 371 r~~~-------------------~~vt~~Df~~Al~~v~~~~~~~~~s~~k~~ 404 (405)
T 4b4t_J 371 RERR-------------------IHVTQEDFELAVGKVMNKNQETAISVAKLF 404 (405)
T ss_dssp HTTC-------------------SBCCHHHHHHHHHHHHHHHTCC--------
T ss_pred HcCC-------------------CCcCHHHHHHHHHHHhCccccccchhHhhh
Confidence 8632 269999999999988665555555555555
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-55 Score=470.61 Aligned_cols=259 Identities=36% Similarity=0.672 Sum_probs=242.1
Q ss_pred hcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccc
Q 044198 453 AVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 532 (772)
Q Consensus 453 ~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l 532 (772)
..+.|+++|+||||++++|++|++.+.+|+++++.|.++|+++++|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCC-CchhHHHHHHHHHhcCCCCCCcEEEEeecCCCC
Q 044198 533 LTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDG-GGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPD 611 (772)
Q Consensus 533 ~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~-~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 611 (772)
+++|+|++++.++.+|..|+..+||||||||+|++++.|..+.... ....+++++||++||++....+|+||+|||+|+
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd 332 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIE 332 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCST
T ss_pred hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChh
Confidence 9999999999999999999999999999999999999997653322 236789999999999999999999999999999
Q ss_pred CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 044198 612 MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDI 691 (772)
Q Consensus 612 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~ 691 (772)
.||||++||||||++|+|++||.++|.+||+.+++++++..++|++.||+.|+|||||||+++|++|++.|+++..
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~---- 408 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERR---- 408 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC----
T ss_pred hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988632
Q ss_pred hhccCCCCCCcccccccccHHHHHHHHhhCCCCCCHHHH
Q 044198 692 KKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSDV 730 (772)
Q Consensus 692 ~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~~~~ 730 (772)
..|+++||++|++++.++.+++++
T Consensus 409 ---------------~~It~eDf~~Al~rv~~~~~~e~l 432 (437)
T 4b4t_I 409 ---------------MQVTAEDFKQAKERVMKNKVEENL 432 (437)
T ss_dssp ---------------SCBCHHHHHHHHHHHHHHHCCCSS
T ss_pred ---------------CccCHHHHHHHHHHHhCCCChhhH
Confidence 269999999999988776655443
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-53 Score=469.65 Aligned_cols=267 Identities=39% Similarity=0.661 Sum_probs=242.1
Q ss_pred hhhhcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEec
Q 044198 450 REIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKG 529 (772)
Q Consensus 450 ~~~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~ 529 (772)
.....+.|+++|+||+|++++|+.|.+.+.+|+++++.|.++|+++++|+|||||||||||++|+|+|++++.+|+.+++
T Consensus 169 ~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~ 248 (437)
T 4b4t_L 169 NMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPA 248 (437)
T ss_dssp SCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred eeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 33456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCC-CCchhHHHHHHHHHhcCCCCCCcEEEEeecC
Q 044198 530 PELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGD-GGGVDRIVNQLLTEMDGLSAKKTVFVIGATN 608 (772)
Q Consensus 530 ~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~-~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn 608 (772)
++++++|+|++++.++.+|..|+..+||||||||+|+++++|..+... .....+++++||++|||+....+++||+|||
T Consensus 249 s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATN 328 (437)
T 4b4t_L 249 SGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATN 328 (437)
T ss_dssp GGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEES
T ss_pred hhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecC
Confidence 999999999999999999999999999999999999999998664322 2236788999999999999999999999999
Q ss_pred CCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044198 609 RPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIE 688 (772)
Q Consensus 609 ~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~ 688 (772)
+|+.||||++||||||++|+||+||.++|.+||+.+++++++..++|++.||+.|+||||+||.++|++|++.|+++..
T Consensus 329 rp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~- 407 (437)
T 4b4t_L 329 RPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDR- 407 (437)
T ss_dssp STTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred CchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988642
Q ss_pred HhhhhccCCCCCCcccccccccHHHHHHHHhhCCCCCCHHHHHHHHH
Q 044198 689 KDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSDVRKYQA 735 (772)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~~~~~~y~~ 735 (772)
..|+.+||.+|++++.++...+....|++
T Consensus 408 ------------------~~i~~~d~~~Al~~v~~~~k~e~~~e~~K 436 (437)
T 4b4t_L 408 ------------------DHINPDDLMKAVRKVAEVKKLEGTIEYQK 436 (437)
T ss_dssp ------------------SSBCHHHHHHHHHHHHHTCC---------
T ss_pred ------------------CCCCHHHHHHHHHHHHhccCcccchhhhc
Confidence 26999999999999988777665555543
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-53 Score=464.54 Aligned_cols=265 Identities=34% Similarity=0.641 Sum_probs=237.4
Q ss_pred hcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccc
Q 044198 453 AVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 532 (772)
Q Consensus 453 ~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l 532 (772)
..+.|+++|+||+|++++|+.|++.+.+|+.+++.|.++|+++++|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCC-CCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCC
Q 044198 533 LTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGD-GGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPD 611 (772)
Q Consensus 533 ~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~-~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 611 (772)
+++|+|++++.++.+|..|+..+||||||||+|+++..|+.+.+. .....+++++||++||++....+|+||+|||+|+
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd 359 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN 359 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcc
Confidence 999999999999999999999999999999999999998764222 2225678999999999999999999999999999
Q ss_pred CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 044198 612 MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDI 691 (772)
Q Consensus 612 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~ 691 (772)
.||||++||||||++|+|++||.++|.+||+.+++++++..++|++.||+.|+|||||||+++|++|++.|+++..
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~---- 435 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR---- 435 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTC----
T ss_pred cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998742
Q ss_pred hhccCCCCCCcccccccccHHHHHHHHhhCCCCCC-HHHHHHHHHH
Q 044198 692 KKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVS-DSDVRKYQAF 736 (772)
Q Consensus 692 ~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~-~~~~~~y~~~ 736 (772)
..|+.+||++|++++.++.. .+...+|.+|
T Consensus 436 ---------------~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~ 466 (467)
T 4b4t_H 436 ---------------KVATEKDFLKAVDKVISGYKKFSSTSRYMQY 466 (467)
T ss_dssp ---------------SSBCHHHHHHHHHHHHHHHCC----------
T ss_pred ---------------CccCHHHHHHHHHHHhcCcccchhHHHHHhh
Confidence 25999999999998744322 1344566666
No 8
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-53 Score=464.12 Aligned_cols=257 Identities=39% Similarity=0.666 Sum_probs=241.2
Q ss_pred hhcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEeccc
Q 044198 452 IAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 531 (772)
Q Consensus 452 ~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~ 531 (772)
...+.|+++|+||+|++++|+.|.+.+.+|+++++.|.++|+++++|+|||||||||||++|+|+|++++.+|+.+++++
T Consensus 171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred ccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCC-chhHHHHHHHHHhcCCCCCCcEEEEeecCCC
Q 044198 532 LLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGG-GVDRIVNQLLTEMDGLSAKKTVFVIGATNRP 610 (772)
Q Consensus 532 l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~-~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 610 (772)
+.++|+|++++.++.+|..|+..+||||||||+|++++.|..+.+... ...+++++||++||++.+..+|+||||||+|
T Consensus 251 l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp 330 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRV 330 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSC
T ss_pred hhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCc
Confidence 999999999999999999999999999999999999999976432222 2567899999999999999999999999999
Q ss_pred CCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044198 611 DMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKD 690 (772)
Q Consensus 611 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~ 690 (772)
+.||||++||||||++|+||+||.++|.+||+.+++++++..++|++.||+.|+|||||||.++|++|++.|+++..
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~--- 407 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQ--- 407 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC---
T ss_pred hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998642
Q ss_pred hhhccCCCCCCcccccccccHHHHHHHHhhCCCCCCH
Q 044198 691 IKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSD 727 (772)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~ 727 (772)
..|+.+||.+|+++++|+.+.
T Consensus 408 ----------------~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 408 ----------------SSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp ----------------SSBCHHHHHHHHHSCSSSCCC
T ss_pred ----------------CCcCHHHHHHHHHHHhCCCCc
Confidence 269999999999999998763
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-53 Score=462.16 Aligned_cols=262 Identities=42% Similarity=0.675 Sum_probs=243.6
Q ss_pred hcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccc
Q 044198 453 AVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 532 (772)
Q Consensus 453 ~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l 532 (772)
..+.|+++|+||||++++|+.|.+.+.+|+.+++.|.++|+++++|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCC-CchhHHHHHHHHHhcCCCCCCcEEEEeecCCCC
Q 044198 533 LTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDG-GGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPD 611 (772)
Q Consensus 533 ~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~-~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 611 (772)
+++|+|++++.++.+|..|+..+|||+||||+|++++.|....... ....+++++||++|||+....+|+||||||+|+
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 9999999999999999999999999999999999999996543332 337899999999999999999999999999999
Q ss_pred CCCccccCCCCccccccCC-CCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 044198 612 MIDPALLRPGRLDQLIYIP-LPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKD 690 (772)
Q Consensus 612 ~ld~allrpgRf~~~i~~~-~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~ 690 (772)
.||||++||||||+.|+|| +||.++|..||+.+++++++..++|++.||+.|+|||||||.++|++|++.|+++..
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~--- 399 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR--- 399 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC---
T ss_pred hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC---
Confidence 9999999999999999997 899999999999999999999999999999999999999999999999999988642
Q ss_pred hhhccCCCCCCcccccccccHHHHHHHHhh-CCCCCCHHHHHHH
Q 044198 691 IKKGQRENPEGAAGEVAEIKKEHFEESMKY-ARRSVSDSDVRKY 733 (772)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~i~~~~~~~al~~-~~~s~~~~~~~~y 733 (772)
..|+++||++|+.+ ++++.+.+++++|
T Consensus 400 ----------------~~i~~~d~~~A~~~~~~~~~~~~~~d~y 427 (428)
T 4b4t_K 400 ----------------YVILQSDLEEAYATQVKTDNTVDKFDFY 427 (428)
T ss_dssp ----------------SSBCHHHHHHHHHHHSCSCCCSSCCCSC
T ss_pred ----------------CCCCHHHHHHHHHHhhCccCCccHhhhh
Confidence 26999999999976 6777776665554
No 10
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-46 Score=401.84 Aligned_cols=249 Identities=44% Similarity=0.785 Sum_probs=231.8
Q ss_pred CCCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q 044198 181 DRLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIM 260 (772)
Q Consensus 181 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~ 260 (772)
...++++|+||||+++++++|++.+.+|+.+|++|+.+|+.+++|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCch---hhHHHHHHHHHHHhhcccccCceEEEEeeCCCCC
Q 044198 261 SKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHG---EVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNS 337 (772)
Q Consensus 261 ~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ 337 (772)
++|.|++++.++.+|..|+...||||||||+|.+++++....+ ....+++.+|++.||++....+|+||||||+|+.
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 9999999999999999999999999999999999988754332 2346788999999999999999999999999999
Q ss_pred CChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhcccccc
Q 044198 338 IDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDL 417 (772)
Q Consensus 338 ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 417 (772)
||||++|||||++.|+|+.|+.++|.+||+.|++++.+..+++++.+|..|+||+|+||..+|++|++.++++.
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~------ 373 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRER------ 373 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT------
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988753
Q ss_pred ccchhhHhhhhhhhccchhhhhhhhhcCc
Q 044198 418 EEDTIDAEVLSSMYVTNENLNAAVAITSP 446 (772)
Q Consensus 418 ~~~~~~~~~~~~~~v~~~d~~~al~~~~p 446 (772)
...++.+||..|+..+.+
T Consensus 374 -----------~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 374 -----------RIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp -----------CSBCCHHHHHHHHHHHHH
T ss_pred -----------CCCcCHHHHHHHHHHHhC
Confidence 234788999999887644
No 11
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=2.2e-45 Score=392.16 Aligned_cols=293 Identities=75% Similarity=1.251 Sum_probs=259.6
Q ss_pred chhhhcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEe
Q 044198 449 LREIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIK 528 (772)
Q Consensus 449 ~~~~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~ 528 (772)
+++...+.|.++|++|+|++.+++.|.+.+.+++.+++.|..+++.++.++||+||||||||++|+++|++++.+|+.++
T Consensus 2 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 2 LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCC-CCchhHHHHHHHHHhcCCCCCCcEEEEeec
Q 044198 529 GPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGD-GGGVDRIVNQLLTEMDGLSAKKTVFVIGAT 607 (772)
Q Consensus 529 ~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~-~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 607 (772)
++++.++|+|++++.++.+|+.|+...|++|||||+|.+...++...++ .+...+++++||+.|+++....+++||+||
T Consensus 82 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~at 161 (301)
T 3cf0_A 82 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 161 (301)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEE
T ss_pred hHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEec
Confidence 9999999999999999999999999999999999999999987654222 233678999999999999888899999999
Q ss_pred CCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 044198 608 NRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEI 687 (772)
Q Consensus 608 n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~ 687 (772)
|+|+.||++++|||||+..+++++|+.++|.+||+.++++.++..+++++.++..+.||||+||+++|++|++.|+++.+
T Consensus 162 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 162 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241 (301)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888889999999999999999999999999999999877
Q ss_pred HHhhhhccCC--CCCC----cccccccccHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHh
Q 044198 688 EKDIKKGQRE--NPEG----AAGEVAEIKKEHFEESMKYARRSVSDSDVRKYQAFANTLQ 741 (772)
Q Consensus 688 ~~~~~~~~~~--~~~~----~~~~~~~i~~~~~~~al~~~~~s~~~~~~~~y~~~~~~~~ 741 (772)
.......... .+.. .......|+++||++|+++++||++.+++++|+.|.++|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 301 (301)
T 3cf0_A 242 ESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301 (301)
T ss_dssp HHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred HhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 5432111100 0000 0122357999999999999999999999999999999984
No 12
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-45 Score=393.11 Aligned_cols=250 Identities=44% Similarity=0.733 Sum_probs=231.9
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
..++++|+||||+++++++|++.+.+|+.+|++|+.+|+.+++|||||||||||||++|+++|++++.+|+.++++++.+
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCch---hhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCC
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHG---EVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSI 338 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~l 338 (772)
+|.|++++.++.+|..|+...||||||||+|.++.++..... ....+.+.+|++.+|+.....+|+||+|||+++.|
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~L 334 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETL 334 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTC
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhc
Confidence 999999999999999999999999999999999998754332 23457788899999999988999999999999999
Q ss_pred ChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccc
Q 044198 339 DPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLE 418 (772)
Q Consensus 339 d~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 418 (772)
|||++|||||++.|+|+.|+.++|.+||+.|++++.+..+++++.+|..|+||+|+||..+|++|++.++++..
T Consensus 335 DpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~------ 408 (437)
T 4b4t_I 335 DPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERR------ 408 (437)
T ss_dssp CTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC------
T ss_pred CHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887532
Q ss_pred cchhhHhhhhhhhccchhhhhhhhhcCccc
Q 044198 419 EDTIDAEVLSSMYVTNENLNAAVAITSPSA 448 (772)
Q Consensus 419 ~~~~~~~~~~~~~v~~~d~~~al~~~~ps~ 448 (772)
..++.+||..|+..+.++.
T Consensus 409 -----------~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 409 -----------MQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp -----------SCBCHHHHHHHHHHHHHHH
T ss_pred -----------CccCHHHHHHHHHHHhCCC
Confidence 3478899999988776543
No 13
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-44 Score=392.55 Aligned_cols=250 Identities=39% Similarity=0.667 Sum_probs=233.0
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
..++++|+||||++++++.|++.+.+|+.+|+.|..+|+.+++|||||||||||||++|+++|++++.+|+.++++++.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchh---hHHHHHHHHHHHhhcccccCceEEEEeeCCCCCC
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGE---VEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSI 338 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~---~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~l 338 (772)
+|.|++++.++.+|..++...||||||||+|.+++++...... ...+.+.+|++.||++....+|+||||||+|+.|
T Consensus 254 ~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~L 333 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVL 333 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhc
Confidence 9999999999999999999999999999999999988654332 3456788899999999988999999999999999
Q ss_pred ChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccc
Q 044198 339 DPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLE 418 (772)
Q Consensus 339 d~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 418 (772)
|||++|||||++.|+|+.|+.++|.+||+.+++++.+..+++++.+|..|+||+|+||..+|++|++.++++..
T Consensus 334 D~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~------ 407 (434)
T 4b4t_M 334 DPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQ------ 407 (434)
T ss_dssp CTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC------
T ss_pred CHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887532
Q ss_pred cchhhHhhhhhhhccchhhhhhhhhcCccc
Q 044198 419 EDTIDAEVLSSMYVTNENLNAAVAITSPSA 448 (772)
Q Consensus 419 ~~~~~~~~~~~~~v~~~d~~~al~~~~ps~ 448 (772)
..++.+||..|+..+.|+.
T Consensus 408 -----------~~i~~~Df~~Al~~v~~~~ 426 (434)
T 4b4t_M 408 -----------SSVKHEDFVEGISEVQARK 426 (434)
T ss_dssp -----------SSBCHHHHHHHHHSCSSSC
T ss_pred -----------CCcCHHHHHHHHHHHhCCC
Confidence 2478899999999988764
No 14
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-44 Score=391.32 Aligned_cols=249 Identities=40% Similarity=0.726 Sum_probs=231.3
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
..++++|+||||++++++.|++.+.+|+.+|++|..+|+.+++|||||||||||||++|+++|++++.+|+.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCc---hhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCC
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTH---GEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSI 338 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~l 338 (772)
+|.|+++..++.+|..+....||||||||+|.+++++.... +....+++.+|++.||++....+++||+|||+|+.|
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 99999999999999999999999999999999998875432 233457788999999999988999999999999999
Q ss_pred ChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccc
Q 044198 339 DPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLE 418 (772)
Q Consensus 339 d~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 418 (772)
||+++|+|||++.|+|+.|+.++|.+||+.|++++.+..+++++.+|..|+||+|+||..+|++|++.++++..
T Consensus 334 DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~------ 407 (437)
T 4b4t_L 334 DPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDR------ 407 (437)
T ss_dssp CTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC------
T ss_pred CHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887532
Q ss_pred cchhhHhhhhhhhccchhhhhhhhhcCcc
Q 044198 419 EDTIDAEVLSSMYVTNENLNAAVAITSPS 447 (772)
Q Consensus 419 ~~~~~~~~~~~~~v~~~d~~~al~~~~ps 447 (772)
..++.+||..|+..+.|+
T Consensus 408 -----------~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 408 -----------DHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp -----------SSBCHHHHHHHHHHHHHT
T ss_pred -----------CCCCHHHHHHHHHHHHhc
Confidence 247888999998877654
No 15
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.4e-44 Score=384.43 Aligned_cols=286 Identities=34% Similarity=0.638 Sum_probs=250.6
Q ss_pred hcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh-CCcEEEEeccc
Q 044198 453 AVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC-QANFISIKGPE 531 (772)
Q Consensus 453 ~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~-~~~~i~v~~~~ 531 (772)
..+.|.++|+||+|++.+|+.|.+.+.+|+++++.|.. +..+++++|||||||||||++|+++|+++ +.+|+.+++++
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 34678999999999999999999999999999999875 46778999999999999999999999999 89999999999
Q ss_pred chhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-CCCcEEEEeecCCC
Q 044198 532 LLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-AKKTVFVIGATNRP 610 (772)
Q Consensus 532 l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-~~~~v~vi~aTn~~ 610 (772)
+.++|+|++++.++.+|+.++...|+||||||+|++.+.|+.. ..+...+++++||.+|+++. ...+++||+|||+|
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~ 159 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP 159 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC--CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCT
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc--cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCc
Confidence 9999999999999999999999999999999999999887653 34457899999999999985 46889999999999
Q ss_pred CCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044198 611 DMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEK 689 (772)
Q Consensus 611 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~ 689 (772)
+.+|++++| ||+..+++++|+.++|.+||+.++++.+.. .+.++..|++.|.||||+||.++|++|++.|+++....
T Consensus 160 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~ 237 (322)
T 1xwi_A 160 WVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSA 237 (322)
T ss_dssp TTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHC
T ss_pred ccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999 999999999999999999999999888765 67899999999999999999999999999999997653
Q ss_pred hhhhc----cCCC-----------------------CCCcc-c--ccccccHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 044198 690 DIKKG----QREN-----------------------PEGAA-G--EVAEIKKEHFEESMKYARRSVSDSDVRKYQAFANT 739 (772)
Q Consensus 690 ~~~~~----~~~~-----------------------~~~~~-~--~~~~i~~~~~~~al~~~~~s~~~~~~~~y~~~~~~ 739 (772)
..... .... ..... + ...+|+++||+.|+++++||++.+++++|++|.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~ 317 (322)
T 1xwi_A 238 THFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTED 317 (322)
T ss_dssp SEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHT
T ss_pred hhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 21000 0000 00000 1 12479999999999999999999999999999999
Q ss_pred Hhhc
Q 044198 740 LQQS 743 (772)
Q Consensus 740 ~~~~ 743 (772)
|+++
T Consensus 318 ~~~~ 321 (322)
T 1xwi_A 318 FGQE 321 (322)
T ss_dssp TCSC
T ss_pred HccC
Confidence 9765
No 16
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.2e-44 Score=424.41 Aligned_cols=267 Identities=39% Similarity=0.686 Sum_probs=241.9
Q ss_pred ccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchh
Q 044198 455 EVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 534 (772)
Q Consensus 455 ~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~ 534 (772)
..|.++|+||+|++++++.|++.+.+|+++++.|..+|..+++|+|||||||||||+||+++|++++.+|+.++++++++
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCC
Q 044198 535 MWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMID 614 (772)
Q Consensus 535 ~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 614 (772)
+|+|++++.++.+|+.|+..+||||||||||+|+++|+.. .++...+++++||++||++....+|+||+|||+|+.||
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~--~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC--CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC--CChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence 9999999999999999999999999999999999998754 33457899999999999999889999999999999999
Q ss_pred ccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044198 615 PALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKG 694 (772)
Q Consensus 615 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~ 694 (772)
+|++||||||+.|++++||.++|.+||+.+++++++..++|+..||+.|.||+|+||.++|++|++.|+++.........
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~ 434 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999775321110
Q ss_pred cCCCCCCcccccccccHHHHHHHHhhCCCCC
Q 044198 695 QRENPEGAAGEVAEIKKEHFEESMKYARRSV 725 (772)
Q Consensus 695 ~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~ 725 (772)
. ...........|+.+||..|++.++|+.
T Consensus 435 ~--~~~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 435 E--TIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp C--CCSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred c--ccchhhhccceeeHHHHHHHHHhCCCcc
Confidence 0 0000011234699999999999998864
No 17
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-43 Score=384.63 Aligned_cols=247 Identities=42% Similarity=0.713 Sum_probs=229.1
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
..++++|+||||+++++++|++.+.+|+.+|+.|+.+|+.+++|||||||||||||++|+++|++++.+|+.++++++.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCch---hhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCC
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHG---EVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSI 338 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~l 338 (772)
+|.|++++.++.+|..|+...||||||||+|.++.++..... ....+.+.++++.||+.....+|+||+|||+++.|
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC
Confidence 999999999999999999999999999999999988765432 23456778889999999988999999999999999
Q ss_pred ChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccc
Q 044198 339 DPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLE 418 (772)
Q Consensus 339 d~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 418 (772)
||+++|+|||++.|+|+.|+.++|.+||+.|++.+.+..+++++.+|+.|+||+|+||..+|++|++.++++..
T Consensus 362 DpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~------ 435 (467)
T 4b4t_H 362 DPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR------ 435 (467)
T ss_dssp CHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTC------
T ss_pred ChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887642
Q ss_pred cchhhHhhhhhhhccchhhhhhhhhcC
Q 044198 419 EDTIDAEVLSSMYVTNENLNAAVAITS 445 (772)
Q Consensus 419 ~~~~~~~~~~~~~v~~~d~~~al~~~~ 445 (772)
..++.+||..|+..+.
T Consensus 436 -----------~~it~~Df~~Al~kV~ 451 (467)
T 4b4t_H 436 -----------KVATEKDFLKAVDKVI 451 (467)
T ss_dssp -----------SSBCHHHHHHHHHHHH
T ss_pred -----------CccCHHHHHHHHHHHh
Confidence 2467889988887653
No 18
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-42 Score=382.32 Aligned_cols=246 Identities=41% Similarity=0.681 Sum_probs=229.1
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
..++++|+||||++++++.|++.+.+|+.+|+.|..+|+.+++|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCC---chhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCC
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKT---HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSI 338 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~l 338 (772)
+|.|+++..++.+|..|+...|||+||||+|.++..+... .+....+++.+|++.||++....+|+||+|||+++.|
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~L 324 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTL 324 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSC
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhc
Confidence 9999999999999999999999999999999999887443 2334578899999999999998999999999999999
Q ss_pred ChhhhccCCceeEEEeC-CCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhcccccc
Q 044198 339 DPALRRSGRFDKEIDIG-VPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDL 417 (772)
Q Consensus 339 d~al~r~gRf~~~i~i~-~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 417 (772)
||+++|||||++.|+|| +|+.++|.+||+.+++++.+..+++++.+|..|+||+|+||..+|++|++.++++..
T Consensus 325 D~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~----- 399 (428)
T 4b4t_K 325 DPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR----- 399 (428)
T ss_dssp CHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred ChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC-----
Confidence 99999999999999996 899999999999999999999999999999999999999999999999999987642
Q ss_pred ccchhhHhhhhhhhccchhhhhhhhhc
Q 044198 418 EEDTIDAEVLSSMYVTNENLNAAVAIT 444 (772)
Q Consensus 418 ~~~~~~~~~~~~~~v~~~d~~~al~~~ 444 (772)
..++.+||..|+...
T Consensus 400 ------------~~i~~~d~~~A~~~~ 414 (428)
T 4b4t_K 400 ------------YVILQSDLEEAYATQ 414 (428)
T ss_dssp ------------SSBCHHHHHHHHHHH
T ss_pred ------------CCCCHHHHHHHHHHh
Confidence 247788999888653
No 19
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.2e-43 Score=369.21 Aligned_cols=266 Identities=49% Similarity=0.891 Sum_probs=219.9
Q ss_pred ccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchh
Q 044198 455 EVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 534 (772)
Q Consensus 455 ~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~ 534 (772)
+.|+++|+||+|++++|+.|.+.+.+|+.+++.++.+++.+++|++|+||||||||+|++++|++++.+++.+++.++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCC
Q 044198 535 MWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMID 614 (772)
Q Consensus 535 ~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 614 (772)
+|+|++++.++.+|+.++...|+++|+||+|.++..|+.. ..+...+++++++.+|++......++++++||+|+.||
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~--~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR--ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 160 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC--cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC
Confidence 9999999999999999998999999999999998766432 22235678999999999998888999999999999999
Q ss_pred ccccCCCCccccccCCCCCHHHHHHHHHHhhcc---CCCCCcccHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044198 615 PALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRK---SPVSKDIDLKAIAKYT--HGFSGADITEICQRACKCAIREEIEK 689 (772)
Q Consensus 615 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~---~~~~~~~~~~~la~~~--~g~sg~di~~l~~~a~~~a~~~~~~~ 689 (772)
++++||||||+.|++++|+.++|.+||+.++++ .++..++|++.+|+.+ +||||+||.++|++|++.|+++....
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999854 4566789999999875 59999999999999999999886532
Q ss_pred hhhhccCCCCCCcccccccccHHHHHHHHhhCCCCCCHHHH
Q 044198 690 DIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSDV 730 (772)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~~~~ 730 (772)
... ........|+++||++|+++++||++++++
T Consensus 241 ~~~--------~~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 241 QKS--------GNEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp -----------------CCBCHHHHHHHHTTCCCCC-----
T ss_pred ccc--------cccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 110 001122479999999999999999998875
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.1e-42 Score=374.85 Aligned_cols=289 Identities=34% Similarity=0.635 Sum_probs=248.2
Q ss_pred hhhcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecc
Q 044198 451 EIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 530 (772)
Q Consensus 451 ~~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~ 530 (772)
....+.|+++|++++|++.+++.|.+.+.+++.+++.+.. +..++.++||+||||||||++|+++|++++.+|+.++++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~ 85 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 85 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence 3456789999999999999999999999999999988877 567788999999999999999999999999999999999
Q ss_pred cchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-CCCcEEEEeecCC
Q 044198 531 ELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-AKKTVFVIGATNR 609 (772)
Q Consensus 531 ~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-~~~~v~vi~aTn~ 609 (772)
++.++|+|++++.++.+|+.++...|+||||||||.+.+.++.. ......+++++||..|+++. ...+++||+|||+
T Consensus 86 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~ 163 (322)
T 3eie_A 86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 163 (322)
T ss_dssp HHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred HHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC--cchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence 99999999999999999999999999999999999999887543 34457899999999999984 5678999999999
Q ss_pred CCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044198 610 PDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIE 688 (772)
Q Consensus 610 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~ 688 (772)
|+.||++++| ||+..+++++|+.++|.+||+.++++.+.. .+.++..|++.++||||+||.++|++|++.|+++...
T Consensus 164 ~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~ 241 (322)
T 3eie_A 164 PWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 241 (322)
T ss_dssp GGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHH
T ss_pred hhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 999999999999999999999999988765 6788999999999999999999999999999999875
Q ss_pred HhhhhccC--------------CCC----------CCcccccccccHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcc
Q 044198 689 KDIKKGQR--------------ENP----------EGAAGEVAEIKKEHFEESMKYARRSVSDSDVRKYQAFANTLQQSR 744 (772)
Q Consensus 689 ~~~~~~~~--------------~~~----------~~~~~~~~~i~~~~~~~al~~~~~s~~~~~~~~y~~~~~~~~~~~ 744 (772)
........ ... ........+|+++||++|++.++||++.+++++|++|.++|++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~~ 321 (322)
T 3eie_A 242 ATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQEG 321 (322)
T ss_dssp CEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC---
T ss_pred hhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 42110000 000 000112357999999999999999999999999999999998754
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=7.3e-42 Score=372.86 Aligned_cols=288 Identities=34% Similarity=0.624 Sum_probs=238.6
Q ss_pred hhcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEeccc
Q 044198 452 IAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 531 (772)
Q Consensus 452 ~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~ 531 (772)
.....|.+.|++|+|++.+++.|.+.+.+++.+++.|.. +..+++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 41 ~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~ 119 (355)
T 2qp9_X 41 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 119 (355)
T ss_dssp ------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred hcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHH
Confidence 344678899999999999999999999999999998887 5678889999999999999999999999999999999999
Q ss_pred chhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCC-CCcEEEEeecCCC
Q 044198 532 LLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSA-KKTVFVIGATNRP 610 (772)
Q Consensus 532 l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~-~~~v~vi~aTn~~ 610 (772)
+.++|+|++++.++.+|..++...|+||||||+|.+.+.|+.. +.+...+++++||..|+++.. ..+++||+|||+|
T Consensus 120 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~ 197 (355)
T 2qp9_X 120 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 197 (355)
T ss_dssp HHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCG
T ss_pred HhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC--cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCc
Confidence 9999999999999999999999999999999999999887543 444578899999999998854 5789999999999
Q ss_pred CCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044198 611 DMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEK 689 (772)
Q Consensus 611 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~ 689 (772)
+.||++++| ||+..+++++|+.++|.+||+.++++.+.. .+.+++.|++.+.||||+||.++|++|++.|+++....
T Consensus 198 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~ 275 (355)
T 2qp9_X 198 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSA 275 (355)
T ss_dssp GGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 999999999999999999999999888754 67889999999999999999999999999999987643
Q ss_pred hhhhccC--------------C-------CCCCc---ccccccccHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcc
Q 044198 690 DIKKGQR--------------E-------NPEGA---AGEVAEIKKEHFEESMKYARRSVSDSDVRKYQAFANTLQQSR 744 (772)
Q Consensus 690 ~~~~~~~--------------~-------~~~~~---~~~~~~i~~~~~~~al~~~~~s~~~~~~~~y~~~~~~~~~~~ 744 (772)
....... . .+... .....+|+++||+.|+++++||++.+++++|++|.++|+.++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~~~ 354 (355)
T 2qp9_X 276 THFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQEG 354 (355)
T ss_dssp SEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC---
T ss_pred hhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCC
Confidence 1100000 0 00000 012357999999999999999999999999999999997654
No 22
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=4e-41 Score=377.61 Aligned_cols=287 Identities=34% Similarity=0.625 Sum_probs=240.6
Q ss_pred hhcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh-CCcEEEEecc
Q 044198 452 IAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC-QANFISIKGP 530 (772)
Q Consensus 452 ~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~-~~~~i~v~~~ 530 (772)
.....|.+.|++|+|++.+++.|.+.+.+|+.+++.|.. +..+++++||+||||||||++|+++|+++ +.+|+.++++
T Consensus 124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~ 202 (444)
T 2zan_A 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 202 (444)
T ss_dssp CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC
T ss_pred eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHH
Confidence 345678899999999999999999999999998888764 35678999999999999999999999999 8999999999
Q ss_pred cchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-CCCcEEEEeecCC
Q 044198 531 ELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-AKKTVFVIGATNR 609 (772)
Q Consensus 531 ~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-~~~~v~vi~aTn~ 609 (772)
++.++|+|+++..++.+|..++...|+||||||||.+.+.|+.. ..+...+++++||..|+++. ...+++||+|||+
T Consensus 203 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 203 DLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp ---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC--CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc--cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 99999999999999999999999999999999999998887653 34457899999999999985 3678999999999
Q ss_pred CCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044198 610 PDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIE 688 (772)
Q Consensus 610 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~ 688 (772)
|+.||++++| ||+..+++++|+.++|..||+.++++.+.. .+.++..|++.++||||+||.++|++|++.|+++...
T Consensus 281 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~ 358 (444)
T 2zan_A 281 PWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQS 358 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 999999999999999999999999887754 6789999999999999999999999999999999875
Q ss_pred Hhhhhcc----CC-----------------------CCCCcc---cccccccHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 044198 689 KDIKKGQ----RE-----------------------NPEGAA---GEVAEIKKEHFEESMKYARRSVSDSDVRKYQAFAN 738 (772)
Q Consensus 689 ~~~~~~~----~~-----------------------~~~~~~---~~~~~i~~~~~~~al~~~~~s~~~~~~~~y~~~~~ 738 (772)
....... .. ...... ...++|+++||..|+++++||++.++++.|++|.+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~ 438 (444)
T 2zan_A 359 ATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTE 438 (444)
T ss_dssp CSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTS
T ss_pred hhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 4211000 00 000000 11357999999999999999999999999999999
Q ss_pred HHhhc
Q 044198 739 TLQQS 743 (772)
Q Consensus 739 ~~~~~ 743 (772)
+|+++
T Consensus 439 ~~~~~ 443 (444)
T 2zan_A 439 DFGQE 443 (444)
T ss_dssp SCTTT
T ss_pred HHcCC
Confidence 98764
No 23
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=6.1e-37 Score=342.27 Aligned_cols=248 Identities=40% Similarity=0.742 Sum_probs=221.7
Q ss_pred cCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhc
Q 044198 456 VPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 535 (772)
Q Consensus 456 ~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~ 535 (772)
.+.++|+||+|++++++.+.+.+.+ +..+..|.+++.+.++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 4678999999999999999998876 677889999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCC-CCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCC
Q 044198 536 WFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSV-GDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMID 614 (772)
Q Consensus 536 ~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~-~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 614 (772)
|+|.++..++.+|..|+...||||||||+|.+...|+... +......+++++||.+||++....+++||+|||+|+.||
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 9999999999999999999999999999999988875421 112225678999999999987778999999999999999
Q ss_pred ccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044198 615 PALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKG 694 (772)
Q Consensus 615 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~ 694 (772)
++++||||||+.+++++|+.++|.+|++.++++.++..++++..+++.+.||+|+||.++|++|+..|.++..
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~------- 241 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGR------- 241 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCC-------
Confidence 9999999999999999999999999999999999988899999999999999999999999999988875421
Q ss_pred cCCCCCCcccccccccHHHHHHHHhhCCC
Q 044198 695 QRENPEGAAGEVAEIKKEHFEESMKYARR 723 (772)
Q Consensus 695 ~~~~~~~~~~~~~~i~~~~~~~al~~~~~ 723 (772)
..|+.+||.+|+..+.+
T Consensus 242 ------------~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 242 ------------DKITMKDFEEAIDRVIA 258 (476)
T ss_dssp ------------SSBCHHHHHHHHHHHC-
T ss_pred ------------CeecHHHHHHHHHHHhc
Confidence 26999999999988743
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=5e-37 Score=335.26 Aligned_cols=279 Identities=37% Similarity=0.655 Sum_probs=236.7
Q ss_pred hhcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEeccc
Q 044198 452 IAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 531 (772)
Q Consensus 452 ~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~ 531 (772)
.....+.+.|++++|++.+++.|.+.+.+++.+++.+...+ .++.++||+||||||||++|+++|..++.+|+.+++++
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~ 152 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASS 152 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHH
Confidence 34456789999999999999999999999888888777654 56789999999999999999999999999999999999
Q ss_pred chhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC--CCCcEEEEeecCC
Q 044198 532 LLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS--AKKTVFVIGATNR 609 (772)
Q Consensus 532 l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~--~~~~v~vi~aTn~ 609 (772)
+.+.|+|+++..++.+|..++...|+||||||||.+.+.++.. ......+++++||..|++.. ...+++||+|||+
T Consensus 153 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~ 230 (357)
T 3d8b_A 153 LTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG--EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNR 230 (357)
T ss_dssp GCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC----CCCCEEEEEEESC
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC--cchHHHHHHHHHHHHHhcccccCCCCEEEEEecCC
Confidence 9999999999999999999999999999999999998877542 33447789999999999875 3568999999999
Q ss_pred CCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044198 610 PDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIE 688 (772)
Q Consensus 610 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~ 688 (772)
++.+|++++| ||+..+++++|+.++|.+|++.+++..+.. .+.++..+++.+.||+|+||.++|++|+..++++...
T Consensus 231 ~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~ 308 (357)
T 3d8b_A 231 PQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQT 308 (357)
T ss_dssp GGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC
T ss_pred hhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999 999999999999999999999999776544 4678999999999999999999999999998886321
Q ss_pred HhhhhccCCCCCCcccccccccHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhh
Q 044198 689 KDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSDVRKYQAFANTLQQ 742 (772)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~~~~~~y~~~~~~~~~ 742 (772)
..... .......+|+.+||..|+++++||++.+++++|++|.++|+.
T Consensus 309 ~~~~~-------~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~ 355 (357)
T 3d8b_A 309 ADIAT-------ITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGC 355 (357)
T ss_dssp -----------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSC
T ss_pred hhhcc-------ccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Confidence 11000 011223579999999999999999999999999999999864
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=8.5e-37 Score=325.34 Aligned_cols=280 Identities=36% Similarity=0.638 Sum_probs=233.0
Q ss_pred hhcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEeccc
Q 044198 452 IAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 531 (772)
Q Consensus 452 ~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~ 531 (772)
.....+.+.|++++|++.+++.+.+.+.++..+++.+..++ .++.++||+||||||||++|+++|+.++.+|+.+++++
T Consensus 11 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 89 (297)
T 3b9p_A 11 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAAS 89 (297)
T ss_dssp TBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTT
T ss_pred hccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHH
Confidence 34456789999999999999999999999888888877654 45789999999999999999999999999999999999
Q ss_pred chhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCC---CcEEEEeecC
Q 044198 532 LLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAK---KTVFVIGATN 608 (772)
Q Consensus 532 l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~---~~v~vi~aTn 608 (772)
+.+.|+|+++..++.+|..+....|++|||||+|.+...+... ......++.++||..+++.... .+++||+|||
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn 167 (297)
T 3b9p_A 90 LTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS--EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATN 167 (297)
T ss_dssp TSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC------CEEEEEEES
T ss_pred HhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC--cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecC
Confidence 9999999999999999999999999999999999998877543 2334678899999999987543 6799999999
Q ss_pred CCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 044198 609 RPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEI 687 (772)
Q Consensus 609 ~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~ 687 (772)
+|+.+|++++| ||+..+++++|+.++|..|++.++++.+.. .+.++..+++.+.||+|+||.++|++|+..|+++..
T Consensus 168 ~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~ 245 (297)
T 3b9p_A 168 RPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELN 245 (297)
T ss_dssp CGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC
T ss_pred ChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 999999999999999999999999876543 456789999999999999999999999999988642
Q ss_pred HHhhhhccCCCCCCcccccccccHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhc
Q 044198 688 EKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSDVRKYQAFANTLQQS 743 (772)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~~~~~~y~~~~~~~~~~ 743 (772)
...... ........|+.+||..|++.++||+++++++.|++|.++|+..
T Consensus 246 ~~~~~~-------~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~ 294 (297)
T 3b9p_A 246 VEQVKC-------LDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDI 294 (297)
T ss_dssp ---------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC------
T ss_pred hhhccc-------ccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCe
Confidence 111000 0011224799999999999999999999999999999998653
No 26
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.8e-36 Score=319.34 Aligned_cols=271 Identities=43% Similarity=0.764 Sum_probs=229.8
Q ss_pred cccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch
Q 044198 454 VEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 533 (772)
Q Consensus 454 ~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~ 533 (772)
...|.+.|++++|++.+++.|.+.+..++.+++.+..++..++.++||+||||||||++|+++|..++.+++.++++++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCC-CCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCC
Q 044198 534 TMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGD-GGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDM 612 (772)
Q Consensus 534 ~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~-~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 612 (772)
+.+.|..+..++.+|..++...|+||||||+|.+.+++...... .....+.+..++..+++.....+++||+|||.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 99999999999999999999999999999999999887643211 11245778888999998888889999999999999
Q ss_pred CCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044198 613 IDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIK 692 (772)
Q Consensus 613 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~ 692 (772)
+|++++||+||+..+++++|+.++|.+||+.++++..+..++++..+++.+.|++++||+++|+.|...|+++..
T Consensus 169 l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~----- 243 (285)
T 3h4m_A 169 LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELR----- 243 (285)
T ss_dssp BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-----
Confidence 999999999999999999999999999999999998888889999999999999999999999999999887642
Q ss_pred hccCCCCCCcccccccccHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHHhhc
Q 044198 693 KGQRENPEGAAGEVAEIKKEHFEESMKYARR--SVSDSDVRKYQAFANTLQQS 743 (772)
Q Consensus 693 ~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~--s~~~~~~~~y~~~~~~~~~~ 743 (772)
..|+.+||.+|+.++.+ +.+...-..|..|+.+|...
T Consensus 244 --------------~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (285)
T 3h4m_A 244 --------------DYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHH 282 (285)
T ss_dssp --------------SSBCHHHHHHHHHHHHHHHCCC-----------------
T ss_pred --------------CcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccC
Confidence 25999999999988733 23344566788888887654
No 27
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=1.7e-36 Score=341.63 Aligned_cols=264 Identities=40% Similarity=0.699 Sum_probs=233.4
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcc
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 536 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~ 536 (772)
+.+.|++|+|++..++.|.+.+.+++.+++.|..++..++.++||+||||||||++|+++|++++.+|+.++++++.+.|
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCcc
Q 044198 537 FGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPA 616 (772)
Q Consensus 537 vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~a 616 (772)
+|+++..++.+|+.|....|++|||||||.+.+++... ..+...+++++||..|++.....+++||+|||+|+.||++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~--~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC--CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc--cchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHH
Confidence 99999999999999999999999999999999887542 2233678999999999999888899999999999999999
Q ss_pred ccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 044198 617 LLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQR 696 (772)
Q Consensus 617 llrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~ 696 (772)
+.|+|||+..+++++|+.++|.+||+.+++.+++..++++..+++.+.||+++||.++|++|++.|+++..... .. ..
T Consensus 357 l~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i-~~-~~ 434 (489)
T 3hu3_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI-DL-ED 434 (489)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTC-CT-TC
T ss_pred HhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccc-cc-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988754211 00 00
Q ss_pred CCCCCcccccccccHHHHHHHHhhCCCC
Q 044198 697 ENPEGAAGEVAEIKKEHFEESMKYARRS 724 (772)
Q Consensus 697 ~~~~~~~~~~~~i~~~~~~~al~~~~~s 724 (772)
............|+++||+.|+++++||
T Consensus 435 ~~~~~~~~~~~~vt~edf~~Al~~~~ps 462 (489)
T 3hu3_A 435 ETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (489)
T ss_dssp SSCCHHHHHHCCBCHHHHHHHHTSHHHH
T ss_pred cccchhhcccCcCCHHHHHHHHHhCCch
Confidence 0000001123469999999999998774
No 28
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=1.3e-35 Score=309.41 Aligned_cols=249 Identities=41% Similarity=0.740 Sum_probs=219.1
Q ss_pred ccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchh
Q 044198 455 EVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 534 (772)
Q Consensus 455 ~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~ 534 (772)
..+...|++++|++.+++.+.+.+.+ +.+++.+..++...+.+++|+||||||||++|+++|+.++.+++.++++++.+
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 45678999999999999999988776 66777888888888999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCC-CCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCC
Q 044198 535 MWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVG-DGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMI 613 (772)
Q Consensus 535 ~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~-~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l 613 (772)
.+.|.+++.++.+|+.+....|+++||||+|.+...++...+ ......++++++|..|+++....+++||+|||+|+.+
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 999999999999999999989999999999999887754321 1122457899999999999888899999999999999
Q ss_pred CccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 044198 614 DPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKK 693 (772)
Q Consensus 614 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 693 (772)
|++++|||||++.+++++|+.++|.+|++.++++.++..+.++..++..+.|||++||.++|++|+..|.++..
T Consensus 164 ~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~------ 237 (257)
T 1lv7_A 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK------ 237 (257)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC------
T ss_pred CHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC------
Confidence 99999999999999999999999999999999999888889999999999999999999999999998876531
Q ss_pred ccCCCCCCcccccccccHHHHHHHHhhCCC
Q 044198 694 GQRENPEGAAGEVAEIKKEHFEESMKYARR 723 (772)
Q Consensus 694 ~~~~~~~~~~~~~~~i~~~~~~~al~~~~~ 723 (772)
..|+.+||++|++.+..
T Consensus 238 -------------~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 238 -------------RVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp -------------SSBCHHHHHHHHHHHTT
T ss_pred -------------CcccHHHHHHHHHHHhc
Confidence 26999999999988653
No 29
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=310.61 Aligned_cols=262 Identities=39% Similarity=0.698 Sum_probs=213.8
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSK 262 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~ 262 (772)
.++++|+||||+++.++.|++.+..|+.+++.++.+++..++|++|+||||||||||++++|++++..++.+++.++.+.
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhh
Q 044198 263 MAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPAL 342 (772)
Q Consensus 263 ~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al 342 (772)
+.++.+..++.+|+.+....|+++|+||+|.++..+.........++.++++..|++...+..++++++||+|+.||+++
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al 163 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAI 163 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhh
Confidence 88899999999999998889999999999998876543222233467788889999887778899999999999999999
Q ss_pred hccCCceeEEEeCCCCHHHHHHHHHHHhcc---CCcccccchhHHHHH--hcCCchhhHHHHHHHHHHHhhhhhcccccc
Q 044198 343 RRSGRFDKEIDIGVPDEVGRLEVLRIHTKN---MKLAEDVNLETVARE--THGFVGADLAALCTEGAMQCIREKMDLIDL 417 (772)
Q Consensus 343 ~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~---~~l~~~~~l~~la~~--t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 417 (772)
+|+|||++.|+++.|+.++|.+||+.+++. ..+..+++++.++.. |+||+|+||..+|++|++.++++.......
T Consensus 164 ~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~ 243 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKS 243 (274)
T ss_dssp HSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999998853 456678899999986 459999999999999999888764321110
Q ss_pred ccchhhHhhhhhhhccchhhhhhhhhcCcccch
Q 044198 418 EEDTIDAEVLSSMYVTNENLNAAVAITSPSALR 450 (772)
Q Consensus 418 ~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~ 450 (772)
........++.+||..|+..+.|+..+
T Consensus 244 ------~~~~~~~~i~~~df~~al~~~~ps~~~ 270 (274)
T 2x8a_A 244 ------GNEKGELKVSHKHFEEAFKKVRSSISK 270 (274)
T ss_dssp ------------CCBCHHHHHHHHTTCCCCC--
T ss_pred ------cccccCCeecHHHHHHHHHHhcCCCCh
Confidence 011134578999999999999998654
No 30
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=1.4e-34 Score=347.10 Aligned_cols=436 Identities=20% Similarity=0.296 Sum_probs=304.6
Q ss_pred CCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 044198 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET----------GCYFLCI 254 (772)
Q Consensus 185 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l----------~~~~~~v 254 (772)
+-.++++.|.+++++.+.+.+.. ..+.++||+||||||||+++++++..+ +..++.+
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred cCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 34678899999999998877653 235789999999999999999999987 5667777
Q ss_pred echhhh--hhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEee
Q 044198 255 NGPEIM--SKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGAT 332 (772)
Q Consensus 255 ~~~~~~--~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~at 332 (772)
+...+. .++.|+.+..++.+|+.+....+++|||||+|.+.+.+....+. .. ..+++.....+..+.+|++|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~--~~----~~~~L~~~l~~~~~~~I~at 322 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ--VD----AANLIKPLLSSGKIRVIGST 322 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCH--HH----HHHHHSSCSSSCCCEEEEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcch--HH----HHHHHHHHHhCCCeEEEEEe
Confidence 776665 45778899999999999887778999999999998765432221 11 22334444456778999999
Q ss_pred CCCC-----CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhcc------CCcccccchhHHHHHhcCC-----chhhH
Q 044198 333 NRPN-----SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKN------MKLAEDVNLETVARETHGF-----VGADL 396 (772)
Q Consensus 333 n~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~------~~l~~~~~l~~la~~t~g~-----~~~dl 396 (772)
++++ .+|+++.+ ||. .+.++.|+.+++.+||+.+... ..+.+ ..+..++..+.+| .+..+
T Consensus 323 ~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~-~al~~~~~~s~~~i~~~~lp~~~ 398 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTA-KAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_dssp CHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHCTTSCTTHHH
T ss_pred CchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHhhhhcccccCchHH
Confidence 8753 57899998 998 5999999999999999876543 22222 2355666665554 44456
Q ss_pred HHHHHHHHHHhhhhhccccccccchhhHhhhhhhhccchhhhhhhhhcCcccchhhhcccCCccc--------------c
Q 044198 397 AALCTEGAMQCIREKMDLIDLEEDTIDAEVLSSMYVTNENLNAAVAITSPSALREIAVEVPNVRW--------------A 462 (772)
Q Consensus 397 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~v~~--------------~ 462 (772)
..++.++.......... .....++.+++..++...... ..+.+.| .
T Consensus 399 i~lld~a~~~~~~~~~~-------------~~~~~v~~~di~~~~~~~~~i-------p~~~~~~~~~~~l~~l~~~l~~ 458 (758)
T 1r6b_X 399 IDVIDEAGARARLMPVS-------------KRKKTVNVADIESVVARIARI-------PEKSVSQSDRDTLKNLGDRLKM 458 (758)
T ss_dssp HHHHHHHHHHHHHSSSC-------------CCCCSCCHHHHHHHHHHHSCC-------CCCCSSSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccc-------------ccCCccCHHHHHHHHHHhcCC-------CccccchhHHHHHHHHHHHHHh
Confidence 67777665332111000 012245666676666543211 1112223 3
Q ss_pred cccchHHHHHHHhhhccccCCchHHHhhcCC----CCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhc---
Q 044198 463 DIGGLDTVKRELQETVQYPVEHPEMFEKFGM----SPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM--- 535 (772)
Q Consensus 463 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~--- 535 (772)
++.|++++++.+...+.. ...|+ .|..++||+||||||||++|+++|..++.+++.++++++..+
T Consensus 459 ~v~g~~~~~~~l~~~i~~--------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKM--------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHH--------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 456666666665554432 12233 234479999999999999999999999999999999987653
Q ss_pred ---------ccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC---------C
Q 044198 536 ---------WFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS---------A 597 (772)
Q Consensus 536 ---------~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~---------~ 597 (772)
|+|..+. ..+....+...++||||||||.+ ...+++.|++.||... .
T Consensus 531 ~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~-------------~~~~~~~Ll~~le~~~~~~~~g~~~~ 595 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-------------HPDVFNILLQVMDNGTLTDNNGRKAD 595 (758)
T ss_dssp SSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS-------------CHHHHHHHHHHHHHSEEEETTTEEEE
T ss_pred hhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc-------------CHHHHHHHHHHhcCcEEEcCCCCEEe
Confidence 3333222 22445555666799999999987 3668999999998532 1
Q ss_pred CCcEEEEeecCCCC-------------------------CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccC----
Q 044198 598 KKTVFVIGATNRPD-------------------------MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKS---- 648 (772)
Q Consensus 598 ~~~v~vi~aTn~~~-------------------------~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~---- 648 (772)
..+++||+|||.+. .++|++++ ||+.+|.|++|+.+++..|++.++++.
T Consensus 596 ~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~ 673 (758)
T 1r6b_X 596 FRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQL 673 (758)
T ss_dssp CTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 25688999999854 57788887 999999999999999999999888632
Q ss_pred ---C--CC-CcccHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHH
Q 044198 649 ---P--VS-KDIDLKAIAKYT--HGFSGADITEICQRACKCAIREEIE 688 (772)
Q Consensus 649 ---~--~~-~~~~~~~la~~~--~g~sg~di~~l~~~a~~~a~~~~~~ 688 (772)
. +. ++.-++.|++.. .+++.++++++++.+...++.+.+-
T Consensus 674 ~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l 721 (758)
T 1r6b_X 674 DQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELL 721 (758)
T ss_dssp HHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHH
T ss_pred HHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 1 11 233456676644 4667899999999999887777653
No 31
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=4.1e-35 Score=324.22 Aligned_cols=281 Identities=37% Similarity=0.634 Sum_probs=229.5
Q ss_pred hhhhcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEec
Q 044198 450 REIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKG 529 (772)
Q Consensus 450 ~~~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~ 529 (772)
++.....+.+.|++|+|++.+++.|.+.+.++..+++.+...+ .++.++||+||||||||++|+++|.+++.+|+.+++
T Consensus 103 ~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~ 181 (389)
T 3vfd_A 103 NEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA 181 (389)
T ss_dssp GTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECS
T ss_pred hhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeH
Confidence 3445566788999999999999999999998888888777665 457899999999999999999999999999999999
Q ss_pred ccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCC--CCcEEEEeec
Q 044198 530 PELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSA--KKTVFVIGAT 607 (772)
Q Consensus 530 ~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~--~~~v~vi~aT 607 (772)
+++.+.|+|+++..++.+|..++...|+||||||||.++..+... ......+++++||..|++... ..+++||+||
T Consensus 182 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~at 259 (389)
T 3vfd_A 182 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG--EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGAT 259 (389)
T ss_dssp CCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----CEEEEEEE
T ss_pred HHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc--cchHHHHHHHHHHHHhhcccccCCCCEEEEEec
Confidence 999999999999999999999999999999999999998876542 334478999999999998754 5679999999
Q ss_pred CCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 044198 608 NRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREE 686 (772)
Q Consensus 608 n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~ 686 (772)
|+++.||++++| ||+..+++++|+.++|.+||+.++.+.... .+.++..|++.+.||++++|..+|+.|+..++++.
T Consensus 260 n~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel 337 (389)
T 3vfd_A 260 NRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIREL 337 (389)
T ss_dssp SCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTS
T ss_pred CCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999 999999999999999999999999876544 45678999999999999999999999999998763
Q ss_pred HHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhh
Q 044198 687 IEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSDVRKYQAFANTLQQ 742 (772)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~~~~~~y~~~~~~~~~ 742 (772)
...... .........|+.+||..+++.++|+++.++++.|++|.++|+.
T Consensus 338 ~~~~~~-------~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~ 386 (389)
T 3vfd_A 338 KPEQVK-------NMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGD 386 (389)
T ss_dssp CCC----------CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC-
T ss_pred hhhhhh-------ccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 211100 0011223479999999999999999999999999999999865
No 32
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=3.8e-34 Score=342.76 Aligned_cols=444 Identities=20% Similarity=0.292 Sum_probs=284.6
Q ss_pred CCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEE
Q 044198 184 DDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET----------GCYFLC 253 (772)
Q Consensus 184 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l----------~~~~~~ 253 (772)
.+-.++++.|.+++++.+.+++.. ....++||+||||||||++|+++|..+ +..++.
T Consensus 175 ~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 175 KEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred hhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 345678899999999999887754 235679999999999999999999997 677777
Q ss_pred EechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeC
Q 044198 254 INGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATN 333 (772)
Q Consensus 254 v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn 333 (772)
+++ ..++.|+.+..++.+|..+....++||||| .. ....+.|+..+ .+..+.+|++||
T Consensus 242 ~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~----------~~~~~~L~~~l----~~~~v~~I~at~ 299 (758)
T 3pxi_A 242 LDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA----------IDASNILKPSL----ARGELQCIGATT 299 (758)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCT----TSSSCEEEEECC
T ss_pred ecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc----------hhHHHHHHHHH----hcCCEEEEeCCC
Confidence 776 456788888999999999998889999999 00 01123333333 356799999999
Q ss_pred CCC-----CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCccc-----ccchhHHHHHhc-----CCchhhHHH
Q 044198 334 RPN-----SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAE-----DVNLETVARETH-----GFVGADLAA 398 (772)
Q Consensus 334 ~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~-----~~~l~~la~~t~-----g~~~~dl~~ 398 (772)
+.+ .+|++++| ||. .+.++.|+.+++.+||+.+........ +..+..++..++ ++.+.....
T Consensus 300 ~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ 376 (758)
T 3pxi_A 300 LDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (758)
T ss_dssp TTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred hHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHH
Confidence 988 79999999 995 599999999999999997765533222 223455555444 445566666
Q ss_pred HHHHHHHHhhhhhccc---c-ccccc--hhh--------------------------------------Hhhhhhhhccc
Q 044198 399 LCTEGAMQCIREKMDL---I-DLEED--TID--------------------------------------AEVLSSMYVTN 434 (772)
Q Consensus 399 l~~~a~~~~~~~~~~~---~-~~~~~--~~~--------------------------------------~~~~~~~~v~~ 434 (772)
++.+|+..+....... + ..... ... ........++.
T Consensus 377 ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~ 456 (758)
T 3pxi_A 377 LIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTV 456 (758)
T ss_dssp HHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHCC---CCT
T ss_pred HHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccCH
Confidence 6766644322111000 0 00000 000 00000112333
Q ss_pred hhhhhhhhhcCcccchh-------hhcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCC
Q 044198 435 ENLNAAVAITSPSALRE-------IAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGC 507 (772)
Q Consensus 435 ~d~~~al~~~~ps~~~~-------~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGt 507 (772)
+++...+.......... ........-.+++.|++.+++.+...+....... ....+|..++||+|||||
T Consensus 457 ~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~----~~~~~p~~~~Ll~Gp~Gt 532 (758)
T 3pxi_A 457 DDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGL----KDPKRPIGSFIFLGPTGV 532 (758)
T ss_dssp HHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTC----SCTTSCSEEEEEESCTTS
T ss_pred HHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHccc----CCCCCCceEEEEECCCCC
Confidence 33333332221100000 0000011123467888888888777665321100 001122336999999999
Q ss_pred chhHHHHHHHHHh---CCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHH
Q 044198 508 GKTLLAKAIANEC---QANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRI 584 (772)
Q Consensus 508 GKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~ 584 (772)
|||++|+++|..+ +.+|+.++++++...+... ...++...+...++||||||||.+ ...+
T Consensus 533 GKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~-------------~~~~ 595 (758)
T 3pxi_A 533 GKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKA-------------HPDV 595 (758)
T ss_dssp SHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGS-------------CHHH
T ss_pred CHHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCcccc-------------CHHH
Confidence 9999999999997 6789999999988776554 233444555667789999999987 3678
Q ss_pred HHHHHHHhcCCC---------CCCcEEEEeecCCCCC------------CCccccCCCCccccccCCCCCHHHHHHHHHH
Q 044198 585 VNQLLTEMDGLS---------AKKTVFVIGATNRPDM------------IDPALLRPGRLDQLIYIPLPDEHSRLQIFKS 643 (772)
Q Consensus 585 ~~~lL~~ld~~~---------~~~~v~vi~aTn~~~~------------ld~allrpgRf~~~i~~~~p~~~~r~~Il~~ 643 (772)
++.||+.|+... ...++++|+|||.+.. +.|++++ ||+.+|.|++|+.+++.+|++.
T Consensus 596 ~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~ 673 (758)
T 3pxi_A 596 FNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSL 673 (758)
T ss_dssp HHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHH
T ss_pred HHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHH
Confidence 899999998632 2356899999997654 7788887 9999999999999999999988
Q ss_pred hhccC-------CCC---CcccHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044198 644 CLRKS-------PVS---KDIDLKAIAKY--THGFSGADITEICQRACKCAIREEIE 688 (772)
Q Consensus 644 ~~~~~-------~~~---~~~~~~~la~~--~~g~sg~di~~l~~~a~~~a~~~~~~ 688 (772)
++.+. ... ++.-++.|++. .-.++.++|+++++.+...++.+.+-
T Consensus 674 ~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~l 730 (758)
T 3pxi_A 674 MSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELL 730 (758)
T ss_dssp HHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 77542 111 23335566553 34567899999999998888777653
No 33
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=5.1e-35 Score=328.57 Aligned_cols=247 Identities=41% Similarity=0.747 Sum_probs=221.9
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcc
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 536 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~ 536 (772)
+.++|+|++|++++++.+.+.+.+ +..+..+.+++...++|++|+||||||||+||+++|++++.+|+.++++++...|
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 788999999999999999988765 5677788889999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCC-CCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCc
Q 044198 537 FGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVG-DGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDP 615 (772)
Q Consensus 537 vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~-~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~ 615 (772)
+|.....++.+|+.++...||++||||||.+...++...+ ......+.+++||.+|++......++++++||+|+.||+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 9999999999999998888999999999999877653211 112245789999999999988888999999999999999
Q ss_pred cccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 044198 616 ALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQ 695 (772)
Q Consensus 616 allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~ 695 (772)
+++||||||+.|++++|+.++|.+||+.++++.++..++++..+|..+.||+|+||+++|++|+..|.++..
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~-------- 256 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR-------- 256 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCC--------
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--------
Confidence 999999999999999999999999999999999998999999999999999999999999999988765421
Q ss_pred CCCCCCcccccccccHHHHHHHHhhCCC
Q 044198 696 RENPEGAAGEVAEIKKEHFEESMKYARR 723 (772)
Q Consensus 696 ~~~~~~~~~~~~~i~~~~~~~al~~~~~ 723 (772)
..|+.+||++|+..+.+
T Consensus 257 -----------~~It~~dl~~al~~v~~ 273 (499)
T 2dhr_A 257 -----------RKITMKDLEEAADRVMM 273 (499)
T ss_dssp -----------SSCCSHHHHHHHHHHTT
T ss_pred -----------CccCHHHHHHHHHHHhc
Confidence 26999999999988644
No 34
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=5.3e-34 Score=296.67 Aligned_cols=246 Identities=42% Similarity=0.760 Sum_probs=215.3
Q ss_pred hcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccc
Q 044198 453 AVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 532 (772)
Q Consensus 453 ~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l 532 (772)
..+.|.++|++++|++.++..+.+...+ +..+..+..+++..+.|++|+||||||||+|++++|+.++.+++.+++.++
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 4566889999999999999999887765 466788889999999999999999999999999999999999999999999
Q ss_pred hhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCC-CCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCC
Q 044198 533 LTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSV-GDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPD 611 (772)
Q Consensus 533 ~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~-~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 611 (772)
...+.|...+.++.+|+.+....|+++|+||+|.+...+.... .......+++++++.+|++......++++++||+|+
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 165 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCch
Confidence 8888898889999999999888899999999999987764311 111224678899999999998888899999999999
Q ss_pred CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 044198 612 MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDI 691 (772)
Q Consensus 612 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~ 691 (772)
.||++++|||||++.+++++|+.++|.+||+.+++..++..++++..+|+.+.||+|+||.++|++|+..|.++..
T Consensus 166 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~---- 241 (254)
T 1ixz_A 166 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR---- 241 (254)
T ss_dssp GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC----
T ss_pred hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC----
Confidence 9999999999999999999999999999999999988888899999999999999999999999999988875421
Q ss_pred hhccCCCCCCcccccccccHHHHHHHH
Q 044198 692 KKGQRENPEGAAGEVAEIKKEHFEESM 718 (772)
Q Consensus 692 ~~~~~~~~~~~~~~~~~i~~~~~~~al 718 (772)
..|+.+||++|+
T Consensus 242 ---------------~~I~~~dl~~a~ 253 (254)
T 1ixz_A 242 ---------------RKITMKDLEEAA 253 (254)
T ss_dssp ---------------SSBCHHHHHHHT
T ss_pred ---------------CCcCHHHHHHHh
Confidence 259999999986
No 35
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=303.26 Aligned_cols=247 Identities=38% Similarity=0.699 Sum_probs=200.0
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcc
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 536 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~ 536 (772)
|+++|++++|++.+++.+.+.+.+ +.+++.+..+|..++.++||+||||||||++|+++|++++.+++.++++++.+.|
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 467899999999999999998876 6777888888999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCC--CCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCC
Q 044198 537 FGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGD--GGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMID 614 (772)
Q Consensus 537 vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~--~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 614 (772)
.|.++..++.+|+.+....|+||||||+|.+...+...... .....+.++++|.++++.....++++|+|||.++.+|
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 99999999999999999999999999999998876542111 1224678899999999987778999999999999999
Q ss_pred ccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCccc--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044198 615 PALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDID--LKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIK 692 (772)
Q Consensus 615 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~--~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~ 692 (772)
++++|||||+..+++++|+.++|.+||+.++++.++..+.+ ...+++.+.||+|+||.++|+.|+..|.++..
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~----- 234 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGH----- 234 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-----------
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC-----
Confidence 99999999999999999999999999999998887765444 47899999999999999999999998887643
Q ss_pred hccCCCCCCcccccccccHHHHHHHHhhCCC
Q 044198 693 KGQRENPEGAAGEVAEIKKEHFEESMKYARR 723 (772)
Q Consensus 693 ~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~ 723 (772)
..|+.+||.+|++++.+
T Consensus 235 --------------~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 235 --------------TSVHTLNFEYAVERVLA 251 (262)
T ss_dssp ----------------CCBCCHHHHHHHHHH
T ss_pred --------------CCCCHHHHHHHHHHhcc
Confidence 25999999999987644
No 36
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=301.95 Aligned_cols=263 Identities=33% Similarity=0.595 Sum_probs=226.1
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh-CCeEEEEechhhhh
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET-GCYFLCINGPEIMS 261 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l-~~~~~~v~~~~~~~ 261 (772)
.++++|++|+|+++.++.|++.+.+|+.+++++.. +..+++++||+||||||||++|+++|+++ +.+++.++++++.+
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 46789999999999999999999999999999875 35678999999999999999999999999 88999999999999
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccc-cCceEEEEeeCCCCCCCh
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKS-RAHVMVIGATNRPNSIDP 340 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~-~~~v~vI~atn~~~~ld~ 340 (772)
++.|+.+..++.+|..+....|+||||||+|.+++++.....+...++.++|+..+++... ..+++||++||+++.+|+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~ 164 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDS 164 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCH
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCH
Confidence 9999999999999999999999999999999999888766666778899999999998753 578999999999999999
Q ss_pred hhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccc-
Q 044198 341 ALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLE- 418 (772)
Q Consensus 341 al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~- 418 (772)
+++| ||+..++++.|+.++|.+|++.+++..... .+.++..+++.|+||+++|+..+|++|++.++++........
T Consensus 165 al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~ 242 (322)
T 1xwi_A 165 AIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKK 242 (322)
T ss_dssp HHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEE
T ss_pred HHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999 999999999999999999999998876653 567899999999999999999999999998887653211000
Q ss_pred -------------------------------cchhhHhhhhhhhccchhhhhhhhhcCccc
Q 044198 419 -------------------------------EDTIDAEVLSSMYVTNENLNAAVAITSPSA 448 (772)
Q Consensus 419 -------------------------------~~~~~~~~~~~~~v~~~d~~~al~~~~ps~ 448 (772)
...+..+......++.+||..|+..++|+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~ 303 (322)
T 1xwi_A 243 VRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTV 303 (322)
T ss_dssp EEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSC
T ss_pred hccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCC
Confidence 000111111234689999999999988874
No 37
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=1.5e-33 Score=300.64 Aligned_cols=267 Identities=40% Similarity=0.712 Sum_probs=228.0
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
..++++|++|+|++++++.|++++..|+.+++.+..+++.+++++||+||||||||++|+++|++++.+++.++++++.+
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCC---chhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCC
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKT---HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSI 338 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~l 338 (772)
.+.|+.+..++.+|+.+....|+++||||+|.+++.++.. .+....+++.+|+..+++.....+++||++||+++.+
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 9999999999999999999999999999999998765322 1223457788999999988777889999999999999
Q ss_pred ChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccc
Q 044198 339 DPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLE 418 (772)
Q Consensus 339 d~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 418 (772)
|++++|+|||+..++++.|+.++|.+|++.+++...+..+++++.++..++||+|+||..+|++|++.++++........
T Consensus 168 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~ 247 (301)
T 3cf0_A 168 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 247 (301)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999888877788899999999999999999999999988876643211000
Q ss_pred cch-------hhH-hhhhhhhccchhhhhhhhhcCccc
Q 044198 419 EDT-------IDA-EVLSSMYVTNENLNAAVAITSPSA 448 (772)
Q Consensus 419 ~~~-------~~~-~~~~~~~v~~~d~~~al~~~~ps~ 448 (772)
... ... .......++.+||..|+..+.|+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~ 285 (301)
T 3cf0_A 248 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 285 (301)
T ss_dssp ------------------CCCBCHHHHHHHHTTCCCSS
T ss_pred hhhcccccccccccccccCCccCHHHHHHHHHHcCCCC
Confidence 000 000 001124688999999999988764
No 38
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=100.00 E-value=2.8e-33 Score=275.69 Aligned_cols=191 Identities=59% Similarity=1.134 Sum_probs=162.6
Q ss_pred cccCCCCCeEEEecccCCCCcEEEECHhhHhhcCCCCCCeEEEeecCcceEEEEEEeCCCCCCCeEEEcHHHHhhcCCCC
Q 044198 3 FRKAKSPNRLIVEEALQDDNSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDDDTCDASKIRMNKVVRSNLRLRL 82 (772)
Q Consensus 3 ~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~ 82 (772)
|+++|.||+|+|+||.++|+++|+|+|++|++|||.+||+|+|+|++++.++|++|+.++++.+.|+|++.+|.|+|+++
T Consensus 20 ~~~~~~p~~l~V~ea~~~Drgivrl~p~~m~~Lgl~~GD~V~I~Gkr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~i 99 (211)
T 3qwz_A 20 LKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGXKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRL 99 (211)
T ss_dssp ------CEEEEEEECSCCCTTEEEECHHHHHHHTCCBTCEEEEECSTTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCT
T ss_pred hhcccCCCeeEEcccccCCCcEEEECHHHHHHcCCCCCCEEEEeCCCCCcEEEEEEeCCCCCCCEEEeCHHHHhhcCCCC
Confidence 67899999999999999999999999999999999999999999998778999999988999999999999999999999
Q ss_pred CCeEEEEEccCCCCCceeEeecccccccCcchhhHHHHHHHhhhcCCcCccCCcEEEEecCceeEEEEEEEecCCceEEe
Q 044198 83 GDLVSVKICNDVVNATKMHVLPLHDTIEGITGNLFDVYLKPYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGEYCHI 162 (772)
Q Consensus 83 ~~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~~ 162 (772)
||.|+|+++.+++.|++|+|+|..+++.++.++.+..+|++||...++||..||.|.+.+.++.+.|+|++++|.+++++
T Consensus 100 GD~V~V~~~~~v~~A~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rPV~~GD~i~v~~~~~~v~f~Vv~t~P~g~viV 179 (211)
T 3qwz_A 100 GDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFXVVETDPSPYCIV 179 (211)
T ss_dssp TCEEEEEECTTCCBCSEEEEEEBGGGCTTCCSCHHHHTTHHHHTTCCEEEETTCEEECCCTTSCCEEEEEEEESSSEEEE
T ss_pred CCEEEEEECCCCCCceEEEEeccCcchhccCchhHHHHHHHHHhhCCceeecCCEEEEccCCcEEEEEEEeecCCCCEEE
Confidence 99999999767999999999999876666666778899999998778999999999998888899999999999999999
Q ss_pred CCCceEEecCCCCccccc-CCCCCCccccccC
Q 044198 163 TPKTEIFCEGEPLKREDE-DRLDDVGYEDVGG 193 (772)
Q Consensus 163 ~~~t~i~~~~~~~~~~~~-~~~~~~~~~~i~G 193 (772)
+++|.|.+.+.|+.+++. ..++.++|+||||
T Consensus 180 ~~~T~I~~~~~pv~~~~~e~~~~~VtYeDIGG 211 (211)
T 3qwz_A 180 APDTVIHCEGEPIKREDEEESLNEVGYDDIGG 211 (211)
T ss_dssp CTTCEEECCSCCBCCCGGGSCCC---------
T ss_pred CCCcEEEEcCcccccccccccCCCcceeCCCC
Confidence 999999999999876542 3678899999998
No 39
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.2e-32 Score=296.50 Aligned_cols=265 Identities=35% Similarity=0.603 Sum_probs=224.0
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSK 262 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~ 262 (772)
.++++|++|+|++++++.|++++.+|+.+++.+.. +..+++++||+||||||||++|+++|++++.+++.++++++.+.
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 90 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc
Confidence 46789999999999999999999999999988876 55778899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc-ccCceEEEEeeCCCCCCChh
Q 044198 263 MAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK-SRAHVMVIGATNRPNSIDPA 341 (772)
Q Consensus 263 ~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~-~~~~v~vI~atn~~~~ld~a 341 (772)
+.++.+..++.+|..+....|+||||||+|.+.+++.....+...++..+|+..+++.. ...+++||++||+++.||++
T Consensus 91 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~a 170 (322)
T 3eie_A 91 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSA 170 (322)
T ss_dssp TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHH
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHH
Confidence 99999999999999999999999999999999988765555666788999999999875 45689999999999999999
Q ss_pred hhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhcccccccc-
Q 044198 342 LRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEE- 419 (772)
Q Consensus 342 l~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~- 419 (772)
+++ ||+..++++.|+.++|.+|++.++...... .+.++..++..++||+++|+..+|++|++.++++.........
T Consensus 171 l~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~ 248 (322)
T 3eie_A 171 IRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDV 248 (322)
T ss_dssp HHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEEC
T ss_pred HHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 999 999999999999999999999998876643 5668999999999999999999999999988887543311100
Q ss_pred -------------------------chhhHhhhhhhhccchhhhhhhhhcCcccch
Q 044198 420 -------------------------DTIDAEVLSSMYVTNENLNAAVAITSPSALR 450 (772)
Q Consensus 420 -------------------------~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~ 450 (772)
..+..+......++.+||..|+..++|+...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~ 304 (322)
T 3eie_A 249 STEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNE 304 (322)
T ss_dssp C----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCT
T ss_pred ccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCH
Confidence 0001111123568999999999999988644
No 40
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=3.7e-32 Score=329.02 Aligned_cols=456 Identities=21% Similarity=0.318 Sum_probs=283.1
Q ss_pred CCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 044198 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET----------GCYFLCI 254 (772)
Q Consensus 185 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l----------~~~~~~v 254 (772)
+-.++++.|.++.+..+.+++.. ....+++|+||||||||++++++|+.+ +.+++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 45678899999998888877643 234679999999999999999999987 7889999
Q ss_pred echhhh--hhcccchHHHHHHHHHHHHHc-CCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEe
Q 044198 255 NGPEIM--SKMAGESESNLREAFNVAEKN-APSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGA 331 (772)
Q Consensus 255 ~~~~~~--~~~~g~~~~~l~~~f~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~a 331 (772)
++..+. ..+.|+.+..++.+|..+... .++||||||+|.+.+...... ...+.+.|..++. +..+.+|++
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g---~~~~~~~L~~~l~----~~~i~~I~a 305 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG---AVDAGNMLKPALA----RGELRLIGA 305 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH----TTCCCEEEE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc---hHHHHHHHHHHHh----CCCeEEEEe
Confidence 998876 467788999999999988875 688999999999986543221 1123334444443 456888999
Q ss_pred eCCCC----CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccC------CcccccchhHHHHHhc-----CCchhhH
Q 044198 332 TNRPN----SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNM------KLAEDVNLETVARETH-----GFVGADL 396 (772)
Q Consensus 332 tn~~~----~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~------~l~~~~~l~~la~~t~-----g~~~~dl 396 (772)
||.++ .+++++.+ ||.. +.++.|+.+++.+||+.+.... .+. +..+..++..+. +|.+...
T Consensus 306 t~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~-~~al~~~~~ls~r~i~~~~lp~ka 381 (854)
T 1qvr_A 306 TTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRIS-DSAIIAAATLSHRYITERRLPDKA 381 (854)
T ss_dssp ECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEEC-HHHHHHHHHHHHHHCCSSCTHHHH
T ss_pred cCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCC-HHHHHHHHHHHhhhcccccChHHH
Confidence 98774 47999998 9986 9999999999999998665432 222 223455555544 3445555
Q ss_pred HHHHHHHHHHhhhhhcc-------------cc-------cccc---------------chh-----------hHhh--hh
Q 044198 397 AALCTEGAMQCIREKMD-------------LI-------DLEE---------------DTI-----------DAEV--LS 428 (772)
Q Consensus 397 ~~l~~~a~~~~~~~~~~-------------~~-------~~~~---------------~~~-----------~~~~--~~ 428 (772)
..++.+|+......... .+ ..+. ..+ ..+. ..
T Consensus 382 i~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (854)
T 1qvr_A 382 IDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILR 461 (854)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665554322111000 00 0000 000 0000 00
Q ss_pred --------------------------------------------------------hhhccchhhhhhhhhcCcccchh-
Q 044198 429 --------------------------------------------------------SMYVTNENLNAAVAITSPSALRE- 451 (772)
Q Consensus 429 --------------------------------------------------------~~~v~~~d~~~al~~~~ps~~~~- 451 (772)
...++.+++...+..........
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~ 541 (854)
T 1qvr_A 462 KLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKL 541 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHHTTSSCHHHHT
T ss_pred HHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccccccCCcCHHHHHHHHHHHhCCChHhh
Confidence 00111222222221111000000
Q ss_pred ------hhcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCC----CCCCceEEeCCCCCchhHHHHHHHHHh-
Q 044198 452 ------IAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGM----SPSRGVLFYGPPGCGKTLLAKAIANEC- 520 (772)
Q Consensus 452 ------~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~~iLl~GppGtGKT~la~alA~~~- 520 (772)
.....+...|+++.|++.+.+.+...+... ..|+ .|..++||+||||||||++|+++|..+
T Consensus 542 ~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~--------~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 542 LEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRA--------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp TCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHH--------GGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 000111223456788888887777665431 1121 233579999999999999999999998
Q ss_pred --CCcEEEEecccchhc------------ccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHH
Q 044198 521 --QANFISIKGPELLTM------------WFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVN 586 (772)
Q Consensus 521 --~~~~i~v~~~~l~~~------------~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~ 586 (772)
+.+|+.++++++... |+|..+ .+.+....+...+++|||||||.+ ...+++
T Consensus 614 ~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l-------------~~~~~~ 678 (854)
T 1qvr_A 614 DTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA-------------HPDVFN 678 (854)
T ss_dssp SSGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGS-------------CHHHHH
T ss_pred CCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc-------------CHHHHH
Confidence 789999999877543 223222 123444455566789999999987 367899
Q ss_pred HHHHHhcCCC---------CCCcEEEEeecCCC--------------------------CCCCccccCCCCccccccCCC
Q 044198 587 QLLTEMDGLS---------AKKTVFVIGATNRP--------------------------DMIDPALLRPGRLDQLIYIPL 631 (772)
Q Consensus 587 ~lL~~ld~~~---------~~~~v~vi~aTn~~--------------------------~~ld~allrpgRf~~~i~~~~ 631 (772)
.||+.|+... ...+++||+|||.+ ..+.|+|++ ||+.++.|++
T Consensus 679 ~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~p 756 (854)
T 1qvr_A 679 ILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRP 756 (854)
T ss_dssp HHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCC
T ss_pred HHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCC
Confidence 9999998642 12478999999972 245677776 9999999999
Q ss_pred CCHHHHHHHHHHhhccC-------C--CC-CcccHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHH
Q 044198 632 PDEHSRLQIFKSCLRKS-------P--VS-KDIDLKAIAKYTH--GFSGADITEICQRACKCAIREEIEK 689 (772)
Q Consensus 632 p~~~~r~~Il~~~~~~~-------~--~~-~~~~~~~la~~~~--g~sg~di~~l~~~a~~~a~~~~~~~ 689 (772)
|+.+++..|++.++++. . +. ++.-++.|++..- .++.++|+++++.+...++.+.+..
T Consensus 757 l~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~ 826 (854)
T 1qvr_A 757 LTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILA 826 (854)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998887531 1 11 2334667777654 5788999999999999888877643
No 41
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=6.1e-35 Score=306.23 Aligned_cols=254 Identities=37% Similarity=0.704 Sum_probs=219.1
Q ss_pred ccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchh
Q 044198 455 EVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 534 (772)
Q Consensus 455 ~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~ 534 (772)
+.+.+.|++++|++.+++.+.+.+.+ +.+++.+..++..++.++||+||||||||++|+++|..++.+++.++++++.+
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 45678999999999999999998776 77889999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCC--CCCCchhHHHHHHHHHhcCCCC-CCcEEEEeecCCCC
Q 044198 535 MWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSV--GDGGGVDRIVNQLLTEMDGLSA-KKTVFVIGATNRPD 611 (772)
Q Consensus 535 ~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~--~~~~~~~~~~~~lL~~ld~~~~-~~~v~vi~aTn~~~ 611 (772)
.+.|.++..++.+|+.+....|+||||||+|.+...+..+. .......+++++||..|++... ..+++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 99999998999999999999999999999999987763221 0111234567889999998754 35699999999999
Q ss_pred CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 044198 612 MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDI 691 (772)
Q Consensus 612 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~ 691 (772)
.+|++++|||||+..+++++|+.++|.+||+.++++.++..+++++.+++.+.||+|+||.++|+.|+..|..+.
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~----- 237 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN----- 237 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC-----
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999999999999999999888888899999999999999999999999988765321
Q ss_pred hhccCCCCCCcccccccccHHHHHHHHhhCCCCCCHH
Q 044198 692 KKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDS 728 (772)
Q Consensus 692 ~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~~ 728 (772)
...|+.+||.+|+..+.|+...+
T Consensus 238 --------------~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 238 --------------QKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp --------------CCSCCHHHHHTSCTTCCCCCC--
T ss_pred --------------cCCcCHHHHHHHHHHHhhcchhh
Confidence 12699999999999998877654
No 42
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=2.7e-32 Score=287.69 Aligned_cols=245 Identities=42% Similarity=0.765 Sum_probs=214.0
Q ss_pred ccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchh
Q 044198 455 EVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 534 (772)
Q Consensus 455 ~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~ 534 (772)
..|.++|++++|++++++.+.+.+.. +..+..+..+++..+.|++|+||||||||+|++++++.++.+++.+++.++..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 44789999999999999999887765 45677888899999999999999999999999999999999999999999988
Q ss_pred cccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCC-CCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCC
Q 044198 535 MWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVG-DGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMI 613 (772)
Q Consensus 535 ~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~-~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l 613 (772)
.+.+...+.++.+|+.+....|+++|+||+|.+...+....+ ......+.+++++.+|++......++++++||+|+.|
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~l 191 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 191 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhC
Confidence 888888889999999999888999999999999876543111 1122467889999999998877889999999999999
Q ss_pred CccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 044198 614 DPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKK 693 (772)
Q Consensus 614 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 693 (772)
|++++|||||++.+++++|+.++|.+||+.+++..++..++++..+|..+.||+|+||+++|++|+..|.++..
T Consensus 192 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~------ 265 (278)
T 1iy2_A 192 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR------ 265 (278)
T ss_dssp CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC------
T ss_pred CHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC------
Confidence 99999999999999999999999999999999988888889999999999999999999999999988765421
Q ss_pred ccCCCCCCcccccccccHHHHHHHHh
Q 044198 694 GQRENPEGAAGEVAEIKKEHFEESMK 719 (772)
Q Consensus 694 ~~~~~~~~~~~~~~~i~~~~~~~al~ 719 (772)
..|+.+||++|++
T Consensus 266 -------------~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 266 -------------RKITMKDLEEAAS 278 (278)
T ss_dssp -------------CSBCHHHHHHHTC
T ss_pred -------------CCcCHHHHHHHhC
Confidence 2599999999863
No 43
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=3.8e-32 Score=296.09 Aligned_cols=265 Identities=35% Similarity=0.592 Sum_probs=217.9
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSK 262 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~ 262 (772)
.+.++|++|+|+++.++.|++++.+|+.+++++.. +..+++++||+||||||||++|+++|++++.+++.++++++.+.
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 45788999999999999999999999999998876 56778899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccc-cCceEEEEeeCCCCCCChh
Q 044198 263 MAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKS-RAHVMVIGATNRPNSIDPA 341 (772)
Q Consensus 263 ~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~-~~~v~vI~atn~~~~ld~a 341 (772)
+.++.+..++.+|..+....|+||||||+|.+.+.+.....+...++.++|+..+++... ..+++||++||+++.+|++
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~a 203 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSA 203 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHH
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHH
Confidence 999999999999999999999999999999999877665566778889999999998754 4679999999999999999
Q ss_pred hhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhcccccc---
Q 044198 342 LRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDL--- 417 (772)
Q Consensus 342 l~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~--- 417 (772)
++| ||+..++++.|+.++|.+||+.++...... .+.+++.++..++||+++||..+|++|++.++++.......
T Consensus 204 l~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~ 281 (355)
T 2qp9_X 204 IRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDV 281 (355)
T ss_dssp HHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEEC
T ss_pred HHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999 999999999999999999999998876643 56689999999999999999999999999888764321100
Q ss_pred -----------------------ccchhhHhhhhhhhccchhhhhhhhhcCcccch
Q 044198 418 -----------------------EEDTIDAEVLSSMYVTNENLNAAVAITSPSALR 450 (772)
Q Consensus 418 -----------------------~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~ 450 (772)
....+..+......++.+||..|+..+.|+...
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~ 337 (355)
T 2qp9_X 282 STEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNE 337 (355)
T ss_dssp CC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCH
T ss_pred ccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCH
Confidence 000011111233568999999999999988543
No 44
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=9.2e-31 Score=292.38 Aligned_cols=246 Identities=44% Similarity=0.743 Sum_probs=215.8
Q ss_pred CCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 044198 184 DDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKM 263 (772)
Q Consensus 184 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~ 263 (772)
+.++|++|+|++++++++++++.. +..+..+..+++..++|+||+||||||||+||+++|++++.+|+.++++++...+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 567899999999999999999886 6678899999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCC---chhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCCh
Q 044198 264 AGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKT---HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDP 340 (772)
Q Consensus 264 ~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~ 340 (772)
.|.....++.+|..+....|+||||||+|.+..+++.. ......+.+++|+..|+++....+++||++||+++.+|+
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~ 169 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDP 169 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCG
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhch
Confidence 99999999999999999999999999999998876532 223345678899999998877788999999999999999
Q ss_pred hhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccccc
Q 044198 341 ALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEED 420 (772)
Q Consensus 341 al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 420 (772)
+++|+|||++.+.++.|+.++|.+|++.+++..++..++++..++..+.||+++||..+|++|+..+.++.
T Consensus 170 allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~--------- 240 (476)
T 2ce7_A 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG--------- 240 (476)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT---------
T ss_pred hhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC---------
Confidence 99999999999999999999999999999998888888889999999999999999999999988776532
Q ss_pred hhhHhhhhhhhccchhhhhhhhhcCcc
Q 044198 421 TIDAEVLSSMYVTNENLNAAVAITSPS 447 (772)
Q Consensus 421 ~~~~~~~~~~~v~~~d~~~al~~~~ps 447 (772)
...++.+||..++..+.+.
T Consensus 241 --------~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 241 --------RDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp --------CSSBCHHHHHHHHHHHC--
T ss_pred --------CCeecHHHHHHHHHHHhcC
Confidence 1246778888888776543
No 45
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=99.97 E-value=9.4e-31 Score=253.15 Aligned_cols=170 Identities=59% Similarity=1.118 Sum_probs=151.6
Q ss_pred cccCCCCCeEEEecccCCCCcEEEECHhhHhhcCCCCCCeEEEeecCcceEEEEEEeCCCCCCCeEEEcHHHHhhcCCCC
Q 044198 3 FRKAKSPNRLIVEEALQDDNSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDDDTCDASKIRMNKVVRSNLRLRL 82 (772)
Q Consensus 3 ~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~ 82 (772)
|+++|.||+|+|+||.++|+++|+|||++|++||+.+||+|+|+|++++.++|++|+.++++.+.|+||+.+|.|+|+++
T Consensus 17 ~~~~~~p~~l~V~ea~~~D~givrl~p~~m~~Lgl~~GD~V~I~Gkr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~i 96 (187)
T 3tiw_A 17 LKQKSRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRL 96 (187)
T ss_dssp -----CCCEEEEEECSSCCTTEEEECHHHHHHHTCCTTCEEEEECSTTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCT
T ss_pred hhcccCCCeEEEcccccCCCcEEEECHHHHHHcCCCCCCEEEEECCCCCeEEEEEEECCCCCCCEEEeCHHHHhhcCCCC
Confidence 67899999999999999999999999999999999999999999998878999999998999999999999999999999
Q ss_pred CCeEEEEEccCCCCCceeEeecccccccCcchhhHHHHHHHhhhcCCcCccCCcEEEEecCceeEEEEEEEecCCceEEe
Q 044198 83 GDLVSVKICNDVVNATKMHVLPLHDTIEGITGNLFDVYLKPYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGEYCHI 162 (772)
Q Consensus 83 ~~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~~ 162 (772)
||.|+|+++.+++.|++|+|+|..+++.++.++.+..+|++||...++||..||.|.+.+.++.+.|+|++++|.+++++
T Consensus 97 GD~V~V~~~~~v~~A~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rpV~~GD~i~v~~~~~~v~f~Vv~t~P~~~v~V 176 (187)
T 3tiw_A 97 GDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIV 176 (187)
T ss_dssp TCEEEEEECTTCEECSEEEEEECCCC-----CCHHHHTHHHHHTTTCCEEETTCEEEEECSSSEEEEEEEEEESSSEEEC
T ss_pred CCEEEEEECCCCCCceEEEEeccccchhhccchhHHHHHHHHhccCCceeeCCCEEEEccCCCEEEEEEEEecCCCCEEE
Confidence 99999999757899999999999776655666678899999998778999999999999888899999999999999999
Q ss_pred CCCceEEecC
Q 044198 163 TPKTEIFCEG 172 (772)
Q Consensus 163 ~~~t~i~~~~ 172 (772)
+++|.|.+++
T Consensus 177 ~~~T~I~~eg 186 (187)
T 3tiw_A 177 APDTVIHCEG 186 (187)
T ss_dssp CTTCEEECCC
T ss_pred CCCcEEEecC
Confidence 9999999865
No 46
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.97 E-value=4.3e-31 Score=296.14 Aligned_cols=264 Identities=33% Similarity=0.601 Sum_probs=215.7
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh-CCeEEEEechhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET-GCYFLCINGPEIM 260 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l-~~~~~~v~~~~~~ 260 (772)
..++++|++|+|+++.++.|++++.+|+.+++++.. +..+++++||+||||||||++|+++|+++ +.+++.++++++.
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 346789999999999999999999999999988864 34677899999999999999999999999 8899999999999
Q ss_pred hhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccc-cCceEEEEeeCCCCCCC
Q 044198 261 SKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKS-RAHVMVIGATNRPNSID 339 (772)
Q Consensus 261 ~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~-~~~v~vI~atn~~~~ld 339 (772)
+.+.|+.+..++.+|..+....|+||||||+|.+++.+.....+...++.++|+..+++... ..+++||+|||+++.+|
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld 285 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 285 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSC
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccC
Confidence 99999999999999999999999999999999999887766666778899999999998753 57899999999999999
Q ss_pred hhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccc
Q 044198 340 PALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLE 418 (772)
Q Consensus 340 ~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 418 (772)
++++| ||+..+.++.|+.++|.+||+.++...... .+.++..++..+.||+++||..+|++|++.++++........
T Consensus 286 ~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~ 363 (444)
T 2zan_A 286 SAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFK 363 (444)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEE
T ss_pred HHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999 999999999999999999999998776543 567899999999999999999999999998887643210000
Q ss_pred c--------------------------------chhhHhhhhhhhccchhhhhhhhhcCccc
Q 044198 419 E--------------------------------DTIDAEVLSSMYVTNENLNAAVAITSPSA 448 (772)
Q Consensus 419 ~--------------------------------~~~~~~~~~~~~v~~~d~~~al~~~~ps~ 448 (772)
. ..++.+......|+.+||..|+..++|+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~ 425 (444)
T 2zan_A 364 KVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTV 425 (444)
T ss_dssp EECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSC
T ss_pred hhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCC
Confidence 0 00011111234689999999999988874
No 47
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=6.2e-30 Score=270.52 Aligned_cols=247 Identities=53% Similarity=0.889 Sum_probs=217.6
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
..++++|++++|++++++.|++++..++.+++.+..+++.++.++||+||||||||++|+++|+.++.+++.+++.++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchh---hHHHHHHHHHHHhhcccccCceEEEEeeCCCCCC
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGE---VEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSI 338 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~---~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~l 338 (772)
.+.+.....++.+|..+....|++|||||+|.+++++...... .....+..++..+++.....++++|+|||.++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 9999999999999999999999999999999998876543222 2234455566666666677789999999999999
Q ss_pred ChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccc
Q 044198 339 DPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLE 418 (772)
Q Consensus 339 d~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 418 (772)
++++++++||+..+.++.|+.++|.+|++.+++...+..+.++..++..+.||+++|+..+|++|...++.+..
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~------ 243 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELR------ 243 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTC------
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc------
Confidence 99999999999999999999999999999999888888888899999999999999999999999888876542
Q ss_pred cchhhHhhhhhhhccchhhhhhhhhcC
Q 044198 419 EDTIDAEVLSSMYVTNENLNAAVAITS 445 (772)
Q Consensus 419 ~~~~~~~~~~~~~v~~~d~~~al~~~~ 445 (772)
..++.+|+..++..+.
T Consensus 244 -----------~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 244 -----------DYVTMDDFRKAVEKIM 259 (285)
T ss_dssp -----------SSBCHHHHHHHHHHHH
T ss_pred -----------CcCCHHHHHHHHHHHH
Confidence 2366778877776553
No 48
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.97 E-value=1.2e-29 Score=264.16 Aligned_cols=244 Identities=41% Similarity=0.682 Sum_probs=209.1
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSK 262 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~ 262 (772)
.+..+|++|+|+++.++.+++++.. +.+++.+..++...+++++|+||||||||++|+++++.++.+++.+++.++...
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 3567899999999999999998876 677788888888999999999999999999999999999999999999999888
Q ss_pred cccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCC---chhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCC
Q 044198 263 MAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKT---HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSID 339 (772)
Q Consensus 263 ~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld 339 (772)
+.+..+..++.+|+.+....|+++|+||+|.+...+... ..+...+.+..++..+++.....++++|++||+++.+|
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~ 164 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCC
Confidence 889999999999999998889999999999998765432 12233467788888999887778899999999999999
Q ss_pred hhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhcccccccc
Q 044198 340 PALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEE 419 (772)
Q Consensus 340 ~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 419 (772)
+++.|++||++.+.++.|+.++|.+|++.+.+...+..+.++..++..+.||+++|+..+|++|+..+..+.
T Consensus 165 ~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~-------- 236 (257)
T 1lv7_A 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN-------- 236 (257)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--------
T ss_pred HHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--------
Confidence 999999999999999999999999999999988888888888999999999999999999999988776543
Q ss_pred chhhHhhhhhhhccchhhhhhhhhc
Q 044198 420 DTIDAEVLSSMYVTNENLNAAVAIT 444 (772)
Q Consensus 420 ~~~~~~~~~~~~v~~~d~~~al~~~ 444 (772)
...++.+|+..++..+
T Consensus 237 ---------~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 237 ---------KRVVSMVEFEKAKDKI 252 (257)
T ss_dssp ---------CSSBCHHHHHHHHHHH
T ss_pred ---------CCcccHHHHHHHHHHH
Confidence 1246777887777654
No 49
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.97 E-value=1.2e-29 Score=285.06 Aligned_cols=246 Identities=41% Similarity=0.703 Sum_probs=216.4
Q ss_pred CCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 044198 184 DDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKM 263 (772)
Q Consensus 184 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~ 263 (772)
+.++|++++|+++++.++++++.. +..+..+..+++..++|+||+||||||||+|++++|++++.+++.+++.++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 578899999999999999998876 6677888899999999999999999999999999999999999999999998888
Q ss_pred ccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCC---chhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCCh
Q 044198 264 AGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKT---HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDP 340 (772)
Q Consensus 264 ~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~ 340 (772)
.+.....++.+|+.+....|+++||||+|.+...++.. ..+...+.+++|+..|++......++++++||+|+.+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 88888899999999887889999999999998765431 123345677888889998887778999999999999999
Q ss_pred hhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccccc
Q 044198 341 ALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEED 420 (772)
Q Consensus 341 al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 420 (772)
++.|+|||++.+.++.|+.++|.+||+.+.+...+..++++..++..+.||+++||..+|++|+..+.++.
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~--------- 255 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--------- 255 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC---------
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---------
Confidence 99999999999999999999999999999988888888899999999999999999999999988776432
Q ss_pred hhhHhhhhhhhccchhhhhhhhhcCcc
Q 044198 421 TIDAEVLSSMYVTNENLNAAVAITSPS 447 (772)
Q Consensus 421 ~~~~~~~~~~~v~~~d~~~al~~~~ps 447 (772)
...++.+|+..++..+.+.
T Consensus 256 --------~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 256 --------RRKITMKDLEEAADRVMML 274 (499)
T ss_dssp --------CSSCCSHHHHHHHHHHTTC
T ss_pred --------CCccCHHHHHHHHHHHhcc
Confidence 1246788888888876554
No 50
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=7.1e-30 Score=305.23 Aligned_cols=266 Identities=39% Similarity=0.686 Sum_probs=232.1
Q ss_pred cCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhc
Q 044198 456 VPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 535 (772)
Q Consensus 456 ~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~ 535 (772)
.+.+.|++|+|++.+++.|.+.+.+++.+++.|..+++.++.++||+||||||||+||+++|++++.+++.++++++.+.
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCc
Q 044198 536 WFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDP 615 (772)
Q Consensus 536 ~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~ 615 (772)
+.|+++..++.+|+.+....|+++|+||+|.+++.++.. ......+++++|++.|++......+++|+|||+|+.+|+
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~--~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~ 355 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC--CSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCT
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc--cchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCH
Confidence 999999999999999999999999999999999887542 223367899999999999988889999999999999999
Q ss_pred cccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 044198 616 ALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQ 695 (772)
Q Consensus 616 allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~ 695 (772)
++.|+|||++.+.++.|+.++|.+||+.+++++.+..+.++..++..+.||+++|+..+|++|+..++++..........
T Consensus 356 al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~ 435 (806)
T 1ypw_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (806)
T ss_dssp TTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHH
T ss_pred HHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999888764321000000
Q ss_pred CCCCCCcccccccccHHHHHHHHhhCCCCC
Q 044198 696 RENPEGAAGEVAEIKKEHFEESMKYARRSV 725 (772)
Q Consensus 696 ~~~~~~~~~~~~~i~~~~~~~al~~~~~s~ 725 (772)
. ..........++.+||..++....|+.
T Consensus 436 ~--~~~~~~~~~~v~~~d~~~al~~~~~s~ 463 (806)
T 1ypw_A 436 T--IDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp H--CCHHHHTTCCCCTTHHHHHHHHSCCCC
T ss_pred c--cchhhhhhhhhhhhhhhccccccCchh
Confidence 0 000001224688899999998877643
No 51
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.96 E-value=2.3e-28 Score=254.09 Aligned_cols=227 Identities=43% Similarity=0.759 Sum_probs=197.5
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSK 262 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~ 262 (772)
.+.++|++++|+++.+.+++++... +..+..+..+++..++|++|+||||||||||++++++.++..++.+++.++...
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 3678999999999999999888775 566788999999999999999999999999999999999999999999998888
Q ss_pred cccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCC---chhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCC
Q 044198 263 MAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKT---HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSID 339 (772)
Q Consensus 263 ~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld 339 (772)
+.+.....++.+|+.+....|+++|+||+|.+...+... ......+.+.+++..+++......++++++||.|+.+|
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld 168 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 168 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSC
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCC
Confidence 888888889999999887789999999999987655421 12233566778888888877667789999999999999
Q ss_pred hhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhh
Q 044198 340 PALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIRE 410 (772)
Q Consensus 340 ~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 410 (772)
++++|++||++.++++.|+.++|.+||+.+.+...+..+.++..++..++||+++|+..+|++|+..+.+.
T Consensus 169 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 169 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 239 (254)
T ss_dssp GGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988888888888999999999999999999999998877653
No 52
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=7.7e-29 Score=258.58 Aligned_cols=245 Identities=39% Similarity=0.640 Sum_probs=190.8
Q ss_pred CCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcc
Q 044198 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMA 264 (772)
Q Consensus 185 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~~ 264 (772)
+++|++++|+++.++.|++++.. +.+++.+..+|+..++++||+||||||||++|+++|++++.+++.+++.++...+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 57899999999999999998876 67778888889999999999999999999999999999999999999999988888
Q ss_pred cchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCc----hhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCCh
Q 044198 265 GESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTH----GEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDP 340 (772)
Q Consensus 265 g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~----~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~ 340 (772)
+.....++.+|+.+....|++|||||+|.+..++.... .......+..++..+++.....++++|++||.++.+|+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 88889999999999988899999999999987654321 12223456677777887766678999999999999999
Q ss_pred hhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCccccc--chhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccc
Q 044198 341 ALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDV--NLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLE 418 (772)
Q Consensus 341 al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~--~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 418 (772)
+++++|||+..++++.|+.++|.+|++.++....+.... .+..++..+.||+++|+..+|++|+..+.++.
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~------- 233 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG------- 233 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC------------
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 999999999999999999999999999988776655433 34789999999999999999999987766432
Q ss_pred cchhhHhhhhhhhccchhhhhhhhhcCcc
Q 044198 419 EDTIDAEVLSSMYVTNENLNAAVAITSPS 447 (772)
Q Consensus 419 ~~~~~~~~~~~~~v~~~d~~~al~~~~ps 447 (772)
...++.+|+..++..+.++
T Consensus 234 ----------~~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 234 ----------HTSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp -------------CCBCCHHHHHHHHHHH
T ss_pred ----------CCCCCHHHHHHHHHHhccC
Confidence 2246777888777765443
No 53
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.96 E-value=3.1e-28 Score=259.16 Aligned_cols=260 Identities=34% Similarity=0.545 Sum_probs=212.4
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSK 262 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~ 262 (772)
.++.+|++++|.+++++.|++++..|+.+++++..++ .+++++||+||||||||++|+++|+.++.+++.++++++...
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 4578899999999999999999999988888887665 457899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccccc---CceEEEEeeCCCCCCC
Q 044198 263 MAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSR---AHVMVIGATNRPNSID 339 (772)
Q Consensus 263 ~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~---~~v~vI~atn~~~~ld 339 (772)
+.+.....++.+|..+....|++|||||+|.+...+.....+...++...|+..+++.... ..+++|++||.++.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~ 173 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELD 173 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBC
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCC
Confidence 9999999999999999999999999999999998766544445567778888888876543 5699999999999999
Q ss_pred hhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCc-ccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccc
Q 044198 340 PALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKL-AEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLE 418 (772)
Q Consensus 340 ~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 418 (772)
+++++ ||+..+.++.|+.++|.+|++.++..... ..+.++..++..+.||+++|+..+|++|+..++++.......
T Consensus 174 ~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~- 250 (297)
T 3b9p_A 174 EAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVK- 250 (297)
T ss_dssp HHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC------
T ss_pred HHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcc-
Confidence 99999 99999999999999999999988776543 234568899999999999999999999988887654221100
Q ss_pred cchhhHhhhhhhhccchhhhhhhhhcCcccch
Q 044198 419 EDTIDAEVLSSMYVTNENLNAAVAITSPSALR 450 (772)
Q Consensus 419 ~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~ 450 (772)
.. .......++.+||..|+..+.|+...
T Consensus 251 --~~--~~~~~~~i~~~d~~~a~~~~~~s~~~ 278 (297)
T 3b9p_A 251 --CL--DISAMRAITEQDFHSSLKRIRRSVAP 278 (297)
T ss_dssp -------CCCCCCCCHHHHHHHTTSCCCSSCH
T ss_pred --cc--cccccCCcCHHHHHHHHHHcCCCCCH
Confidence 00 00122458899999999998887543
No 54
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.96 E-value=3.7e-28 Score=265.03 Aligned_cols=261 Identities=35% Similarity=0.582 Sum_probs=212.6
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
..++.+|++|+|++++++.|++++..|+.+++.+...+ .+++++||+||||||||++|+++|+.++.+++.++++++..
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 34678999999999999999999999988888776654 56789999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccc--cCceEEEEeeCCCCCCC
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKS--RAHVMVIGATNRPNSID 339 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~--~~~v~vI~atn~~~~ld 339 (772)
.+.++.+..++.+|..+....|++|||||+|.+.+.+.........++...|+..+++... ..++++|++||+++.++
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~ 235 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEID 235 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCC
Confidence 9999999999999999999999999999999999876655555667888889988887653 46799999999999999
Q ss_pred hhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccc
Q 044198 340 PALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLE 418 (772)
Q Consensus 340 ~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 418 (772)
+++++ ||+..+.++.|+.++|.+|++.++...... .+.+++.++..+.||+++|+..+|++|+..+++......
T Consensus 236 ~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~--- 310 (357)
T 3d8b_A 236 EAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTAD--- 310 (357)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-----
T ss_pred HHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhh---
Confidence 99999 999999999999999999999887654332 345788999999999999999999999888776532110
Q ss_pred cchhhHhhhhhhhccchhhhhhhhhcCcccch
Q 044198 419 EDTIDAEVLSSMYVTNENLNAAVAITSPSALR 450 (772)
Q Consensus 419 ~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~ 450 (772)
..... ......++.+||..++..+.|+...
T Consensus 311 ~~~~~--~~~~~~i~~~d~~~al~~~~ps~~~ 340 (357)
T 3d8b_A 311 IATIT--PDQVRPIAYIDFENAFRTVRPSVSP 340 (357)
T ss_dssp ----------CCCBCHHHHHHHHHHHGGGCCC
T ss_pred hcccc--ccccCCcCHHHHHHHHHhcCCCCCH
Confidence 00000 1123468899999999998886543
No 55
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.95 E-value=3.6e-27 Score=248.47 Aligned_cols=226 Identities=43% Similarity=0.764 Sum_probs=195.9
Q ss_pred CCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 044198 184 DDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKM 263 (772)
Q Consensus 184 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~ 263 (772)
++++|++++|+++.+++++.+... +..+..+..+++..++|++|+||||||||||++++++.++..++.+++.++...+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 678899999999999999888765 5567889999999999999999999999999999999999999999999988877
Q ss_pred ccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCC---chhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCCh
Q 044198 264 AGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKT---HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDP 340 (772)
Q Consensus 264 ~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~ 340 (772)
.+.....+..+|+.+....|+++|+||+|.+...+... ......+.+.+++..+++......++++++||.|+.+|+
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~ 193 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 193 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCH
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCH
Confidence 78888889999999988889999999999887654321 122334566777777877766667899999999999999
Q ss_pred hhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhh
Q 044198 341 ALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIRE 410 (772)
Q Consensus 341 al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 410 (772)
++.|++||++.++++.|+.++|.+||+.+.+...+..++++..++..++||+++||..+|++|+..+.+.
T Consensus 194 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~ 263 (278)
T 1iy2_A 194 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 263 (278)
T ss_dssp HHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988888888888999999999999999999999998776543
No 56
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.95 E-value=1.9e-29 Score=284.27 Aligned_cols=361 Identities=21% Similarity=0.246 Sum_probs=237.7
Q ss_pred CCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CeEEEEechhhhh
Q 044198 184 DDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG--CYFLCINGPEIMS 261 (772)
Q Consensus 184 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~--~~~~~v~~~~~~~ 261 (772)
+...|++++|+++.++.+.+++..- ..+..+++++||+||||||||++|+++|++++ .+++.++++++.+
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 3556899999999999998877541 12456778999999999999999999999998 8999999999999
Q ss_pred hcccchHHHHHHHHHHH---HHcCCceEEeccccccccCCCCCchh----hHH---------------HHHHHHHHHhh-
Q 044198 262 KMAGESESNLREAFNVA---EKNAPSIIFIDEIDSIAPKREKTHGE----VEK---------------RIVSQLLTLMD- 318 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a---~~~~p~il~iDEid~l~~~~~~~~~~----~~~---------------~v~~~L~~lld- 318 (772)
++.++.+. ++.+|+.+ ....|++|||||+|.+++++...... ... ++...++..++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999887 99999998 77789999999999999887543211 001 11122333333
Q ss_pred -cccccCceEEEEeeCCCCCCChhhhccCCcee--EEEeCCC--CHHHHHHHHHHHhccCCcccccchhHHHHHhcCCch
Q 044198 319 -GMKSRAHVMVIGATNRPNSIDPALRRSGRFDK--EIDIGVP--DEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVG 393 (772)
Q Consensus 319 -~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~--~i~i~~p--~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~ 393 (772)
+......+++++|||+++.+|++++|++||++ .+.++.| +.++|.+|++.+.. .+++.++..++| |
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--g 253 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--G 253 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--h
Confidence 22233345666899999999999999999998 5566777 45778887764432 268888999999 9
Q ss_pred hhHHHHHHHHHHHhhhhhccccccccchhhHhhhhhhhccchhhhhhhhhcCcccchhhhcccCCcccccccchHHHHHH
Q 044198 394 ADLAALCTEGAMQCIREKMDLIDLEEDTIDAEVLSSMYVTNENLNAAVAITSPSALREIAVEVPNVRWADIGGLDTVKRE 473 (772)
Q Consensus 394 ~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~v~~~~i~g~~~~k~~ 473 (772)
+|+.++|....... . ..+... .+ + .+.
T Consensus 254 adl~~l~~~i~~p~----~----------------------~~I~~~--------lr-----------~------~I~-- 280 (456)
T 2c9o_A 254 QDILSMMGQLMKPK----K----------------------TEITDK--------LR-----------G------EIN-- 280 (456)
T ss_dssp --------------------------------------------------------------------C------HHH--
T ss_pred hHHHHHHhhhcccc----h----------------------hhHHHH--------HH-----------H------HHH--
Confidence 99988874311000 0 000000 00 0 000
Q ss_pred HhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcccccchHHHHHHHHHHHh
Q 044198 474 LQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQ 553 (772)
Q Consensus 474 l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~ 553 (772)
+.+...++.+..
T Consensus 281 --------------------------------------------------------------------~~l~~~~~~g~~ 292 (456)
T 2c9o_A 281 --------------------------------------------------------------------KVVNKYIDQGIA 292 (456)
T ss_dssp --------------------------------------------------------------------HHHHHHHHTTSE
T ss_pred --------------------------------------------------------------------HHHHHHHHhccc
Confidence 001111111110
Q ss_pred -CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEee---------cC---CCCCCCccccCC
Q 044198 554 -SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGA---------TN---RPDMIDPALLRP 620 (772)
Q Consensus 554 -~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a---------Tn---~~~~ld~allrp 620 (772)
..|.|+||||+|.+ .....+.||..|+.... .++|+++ |+ .|+.|+|.+++
T Consensus 293 ~v~~~VliIDEa~~l-------------~~~a~~aLlk~lEe~~~--~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s- 356 (456)
T 2c9o_A 293 ELVPGVLFVDEVHML-------------DIECFTYLHRALESSIA--PIVIFASNRGNCVIRGTEDITSPHGIPLDLLD- 356 (456)
T ss_dssp EEEECEEEEESGGGC-------------BHHHHHHHHHHTTSTTC--CEEEEEECCSEEECBTTSSCEEETTCCHHHHT-
T ss_pred cccceEEEEechhhc-------------CHHHHHHHHHHhhccCC--CEEEEecCCccccccccccccccccCChhHHh-
Confidence 01259999999998 36689999999996543 3555555 33 27788888998
Q ss_pred CCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 044198 621 GRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYT-HGFSGADITEICQRACKCAIREEIEKDIKKGQREN 698 (772)
Q Consensus 621 gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~-~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~ 698 (772)
||.. +.|++|+.++..+|++..+...... ++..+..+++.+ .| +.+..-++++.|...|..+..
T Consensus 357 -R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~----------- 422 (456)
T 2c9o_A 357 -RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGK----------- 422 (456)
T ss_dssp -TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTC-----------
T ss_pred -hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCC-----------
Confidence 9986 6999999999999999887544333 334466777776 54 788888888888777765432
Q ss_pred CCCcccccccccHHHHHHHHhhC
Q 044198 699 PEGAAGEVAEIKKEHFEESMKYA 721 (772)
Q Consensus 699 ~~~~~~~~~~i~~~~~~~al~~~ 721 (772)
..|+.+|+.+++.-+
T Consensus 423 --------~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 423 --------DSIEKEHVEEISELF 437 (456)
T ss_dssp --------SSBCHHHHHHHHHHS
T ss_pred --------CccCHHHHHHHHHHh
Confidence 269999999999876
No 57
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.95 E-value=7.6e-28 Score=255.15 Aligned_cols=176 Identities=20% Similarity=0.322 Sum_probs=141.5
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcccccchHHHHHHHHHH----HhCCCeEEEEcCchhh
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKA----RQSAPCVLFFDELDSI 567 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a----~~~~p~ilfiDEid~l 567 (772)
+.+++.++|||||||||||++|+++|+.++.+|+.++++++.++|+|+++..++.+|+.| +...||||||||||++
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567789999999999999999999999999999999999999999999999999999999 5778999999999999
Q ss_pred hhccCCCCCCCCchhHHHHHHHHHhcCCC-----------CCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHH
Q 044198 568 AIQRGSSVGDGGGVDRIVNQLLTEMDGLS-----------AKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHS 636 (772)
Q Consensus 568 ~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-----------~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~ 636 (772)
.+.++..........++.+.|++.||+.. ...+++||+|||+++.||++++|||||+..+++ |+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cCHHH
Confidence 98665332222235678899999998543 456899999999999999999999999988874 69999
Q ss_pred HHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHH
Q 044198 637 RLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITE 673 (772)
Q Consensus 637 r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~ 673 (772)
|.+|++.++.. .+++.+.+++.+++|++++|..
T Consensus 190 r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 190 RIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHH
Confidence 99999988864 3577999999999999999874
No 58
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.95 E-value=8.5e-27 Score=257.54 Aligned_cols=259 Identities=33% Similarity=0.540 Sum_probs=203.2
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
....++|++|+|.+++++.|.+++..|+.+++++..++ .++.++||+||||||||++|+++|.+++.+++.+++.++.+
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 34678899999999999999999999988888887765 45789999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccc--cCceEEEEeeCCCCCCC
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKS--RAHVMVIGATNRPNSID 339 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~--~~~v~vI~atn~~~~ld 339 (772)
.+.++.+..++.+|..+....|+||||||+|.++..+.........++...|+..+++... ..+++||++||+++.++
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 266 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELD 266 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcC
Confidence 9999999999999999999999999999999998876655555667888899999987765 46799999999999999
Q ss_pred hhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccc
Q 044198 340 PALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLE 418 (772)
Q Consensus 340 ~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 418 (772)
+++++ ||...+.++.|+.++|.+||+.++...... .+.++..++..+.||+++++..+|+.|+..++++........
T Consensus 267 ~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~ 344 (389)
T 3vfd_A 267 EAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKN 344 (389)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---C
T ss_pred HHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 99999 999999999999999999999887654322 334688999999999999999999999888776533211000
Q ss_pred cchhhHhhhhhhhccchhhhhhhhhcCccc
Q 044198 419 EDTIDAEVLSSMYVTNENLNAAVAITSPSA 448 (772)
Q Consensus 419 ~~~~~~~~~~~~~v~~~d~~~al~~~~ps~ 448 (772)
. .......++.+||..++....|+.
T Consensus 345 ---~--~~~~~~~i~~~d~~~al~~~~~s~ 369 (389)
T 3vfd_A 345 ---M--SASEMRNIRLSDFTESLKKIKRSV 369 (389)
T ss_dssp ---C--SSSCCCCCCHHHHHHHHHHCCCSS
T ss_pred ---c--chhhcCCcCHHHHHHHHHHcCCCC
Confidence 0 001223577889998888877654
No 59
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.95 E-value=1.1e-28 Score=258.70 Aligned_cols=249 Identities=42% Similarity=0.682 Sum_probs=206.3
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSK 262 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~ 262 (772)
.++++|++++|.+++++.+++++.. +.+++.+..++...++++||+||||||||++|+++|+.++.+++.+++.++...
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 3567899999999999999998876 778899999999999999999999999999999999999999999999998888
Q ss_pred cccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCc----hhhHHHHHHHHHHHhhcccc-cCceEEEEeeCCCCC
Q 044198 263 MAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTH----GEVEKRIVSQLLTLMDGMKS-RAHVMVIGATNRPNS 337 (772)
Q Consensus 263 ~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~----~~~~~~v~~~L~~lld~~~~-~~~v~vI~atn~~~~ 337 (772)
+.+.....++.+|+.+....|++|||||+|.+...+.... .....+.+..|+..+++... ..++++|++||.++.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 8887777788899999888999999999999987642211 11112344556666766543 345899999999999
Q ss_pred CChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhcccccc
Q 044198 338 IDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDL 417 (772)
Q Consensus 338 ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 417 (772)
+|+++.+++||+..+.++.|+.++|.++|+.+++.+.+..+.+++.++..+.||+++|+..+|++|+..+....
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~------ 237 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN------ 237 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC------
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 99999999999999999999999999999999988887778889999999999999999999999987765432
Q ss_pred ccchhhHhhhhhhhccchhhhhhhhhcCcccc
Q 044198 418 EEDTIDAEVLSSMYVTNENLNAAVAITSPSAL 449 (772)
Q Consensus 418 ~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~ 449 (772)
...++.+++..++....|+..
T Consensus 238 -----------~~~i~~~~~~~a~~~~~~~~~ 258 (268)
T 2r62_A 238 -----------QKEVRQQHLKEAVERGIAGLE 258 (268)
T ss_dssp -----------CCSCCHHHHHTSCTTCCCCCC
T ss_pred -----------cCCcCHHHHHHHHHHHhhcch
Confidence 123667788878777766644
No 60
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.94 E-value=3.5e-26 Score=251.61 Aligned_cols=389 Identities=19% Similarity=0.268 Sum_probs=196.7
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhHHHHhCCC-CCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hcccc
Q 044198 189 EDVGGVRKQLGQIREVVELPLRHPQIFKALGVK-PPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS-KMAGE 266 (772)
Q Consensus 189 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~-~~~g~ 266 (772)
++|+|+++.++.|..++..+++++.++..+... +++++||+||||||||++|+++|+.++.+++.++++.+.. .|.|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 368999999999999888776665555444332 5678999999999999999999999999999999998887 58884
Q ss_pred -hHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEe-eCCCCCCChhhhc
Q 044198 267 -SESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGA-TNRPNSIDPALRR 344 (772)
Q Consensus 267 -~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~a-tn~~~~ld~al~r 344 (772)
.+..++.+|+.+... +++||++.+... ..+..+++++++|+..||++.....+ +++ ||+++.||++|+|
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~---~~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~r 165 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRAR---AEDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLRE 165 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhcc---chhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHc
Confidence 789999999988764 468998876533 33456789999999999998776555 444 9999999999999
Q ss_pred cCCceeEEEeCCCCHH-HHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccccchhh
Q 044198 345 SGRFDKEIDIGVPDEV-GRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEEDTID 423 (772)
Q Consensus 345 ~gRf~~~i~i~~p~~~-~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~ 423 (772)
+|||+++|+++.|+.. .|.+|+.. .++ +++. .++..++..
T Consensus 166 ggr~D~~i~i~lP~~~~~~~ei~~~--~g~--------~~~~--------~~~~~~~~~--------------------- 206 (444)
T 1g41_A 166 GQLDDKEIEIDVSAGVSMGVEIMAP--PGM--------EEMT--------NQLQSLFQN--------------------- 206 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcceEEEEcCCCCccchhhhhcC--CCh--------HHHH--------HHHHHHHHh---------------------
Confidence 9999999999999987 77777653 110 0000 000000000
Q ss_pred HhhhhhhhccchhhhhhhhhcCcccchhhhcccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeC
Q 044198 424 AEVLSSMYVTNENLNAAVAITSPSALREIAVEVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYG 503 (772)
Q Consensus 424 ~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~G 503 (772)
..|.... ...++. .++++ +|
T Consensus 207 --------------------~~~~~~~-----~~~~~v------~~a~~--------------------------~l--- 226 (444)
T 1g41_A 207 --------------------LGSDKTK-----KRKMKI------KDALK--------------------------AL--- 226 (444)
T ss_dssp ----------------------------------------------------------------------------C---
T ss_pred --------------------hcCCCCc-----ceeeeH------HHHHH--------------------------HH---
Confidence 0000000 000000 00000 00
Q ss_pred CCCCchhHHHHHHHHHhCCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCc-hh
Q 044198 504 PPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGG-VD 582 (772)
Q Consensus 504 ppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~-~~ 582 (772)
..+-..+++ ..+.-.+...++|... .++|+||||+++...+.. ..+. ..
T Consensus 227 -------------------------~~~e~~~l~-~~~~~~~~ai~~ae~~--~il~~DEidki~~~~~~~--~~D~s~e 276 (444)
T 1g41_A 227 -------------------------IDDEAAKLI-NPEELKQKAIDAVEQN--GIVFIDEIDKICKKGEYS--GADVSRE 276 (444)
T ss_dssp -------------------------CGGGSCSSC-CHHHHHHHHHHHHHHH--CEEEEETGGGGSCCSSCS--SSHHHHH
T ss_pred -------------------------HHHHHHHcc-CHHHHHHHHHHHhccC--CeeeHHHHHHHhhccCCC--CCCchHH
Confidence 001111121 2345566677777444 399999999997553211 1112 33
Q ss_pred HHHHHHHHHhcCCC--------CCCcEEEEeec----CCCCCCCccccCCCCccccccCCCCCHHHHHHHHH---H----
Q 044198 583 RIVNQLLTEMDGLS--------AKKTVFVIGAT----NRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFK---S---- 643 (772)
Q Consensus 583 ~~~~~lL~~ld~~~--------~~~~v~vi~aT----n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~---~---- 643 (772)
-+++.||..||+-. ...++++|||. +.|..+-|.|+. ||+.+|.++.++.++..+|++ .
T Consensus 277 gvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~ 354 (444)
T 1g41_A 277 GVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTE 354 (444)
T ss_dssp HHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHH
T ss_pred HHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHH
Confidence 47889999999842 35678999987 234445578875 999999999999999999994 1
Q ss_pred -hhcc---CCCC---CcccHHHHHH-------HcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccc
Q 044198 644 -CLRK---SPVS---KDIDLKAIAK-------YTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEI 709 (772)
Q Consensus 644 -~~~~---~~~~---~~~~~~~la~-------~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i 709 (772)
+.+. .+.. .+.-+..+++ +|...-++-|+.++..+...+..+.... ......|
T Consensus 355 q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~~-------------~~~~~~i 421 (444)
T 1g41_A 355 QYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDM-------------NGQTVNI 421 (444)
T ss_dssp HHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGGC-------------TTCEEEE
T ss_pred HHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhcccc-------------CCCeEEE
Confidence 1111 1111 2233555555 3455666777777776666555443210 0123469
Q ss_pred cHHHHHHHHhhCCCCCCHHHHHHH
Q 044198 710 KKEHFEESMKYARRSVSDSDVRKY 733 (772)
Q Consensus 710 ~~~~~~~al~~~~~s~~~~~~~~y 733 (772)
+.+.+.+.+. +.+..+++.+|
T Consensus 422 ~~~~v~~~l~---~~~~~~dl~~~ 442 (444)
T 1g41_A 422 DAAYVADALG---EVVENEDLSRF 442 (444)
T ss_dssp CHHHHHHHHT---TTTTCHHHHHH
T ss_pred eHHHHHHhcC---ccccCCChhcc
Confidence 9999988775 45788889888
No 61
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.91 E-value=2.3e-26 Score=259.11 Aligned_cols=204 Identities=21% Similarity=0.300 Sum_probs=150.5
Q ss_pred cCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhC--CcEEEEecccch
Q 044198 456 VPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELL 533 (772)
Q Consensus 456 ~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~--~~~i~v~~~~l~ 533 (772)
.|...|++++|++++++.+...+.+ -..+..+++++||+||||||||++|+++|++++ .+|+.++++++.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~--------~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVEL--------IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH--------HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHH--------HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 4567799999999999988876643 123666788999999999999999999999998 999999999999
Q ss_pred hcccccchHHHHHHHHHH---HhCCCeEEEEcCchhhhhccCCCCCCC-----------------CchhHHHHHHHHHhc
Q 044198 534 TMWFGESEANVRDVFDKA---RQSAPCVLFFDELDSIAIQRGSSVGDG-----------------GGVDRIVNQLLTEMD 593 (772)
Q Consensus 534 ~~~vg~se~~i~~vf~~a---~~~~p~ilfiDEid~l~~~r~~~~~~~-----------------~~~~~~~~~lL~~ld 593 (772)
++|+|+++. ++.+|+.| +...||||||||+|++++.|+...... +...++.++++..|+
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 999999998 99999999 788899999999999999886531110 001234455777776
Q ss_pred --CCCCCCcEEEEeecCCCCCCCccccCCCCccc--cccCCCCC--HHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCC
Q 044198 594 --GLSAKKTVFVIGATNRPDMIDPALLRPGRLDQ--LIYIPLPD--EHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFS 667 (772)
Q Consensus 594 --~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~--~i~~~~p~--~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~s 667 (772)
++...+.++|++|||+++.+|+++.||||||+ .+++|.|+ .++|.+|++.+.. .|++.+++.+.|
T Consensus 182 ~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g-- 252 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG-- 252 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-------
T ss_pred hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--
Confidence 44555667777999999999999999999998 67778884 4778888876552 378999999999
Q ss_pred HHHHHHHHHH
Q 044198 668 GADITEICQR 677 (772)
Q Consensus 668 g~di~~l~~~ 677 (772)
|+||.++|..
T Consensus 253 gadl~~l~~~ 262 (456)
T 2c9o_A 253 GQDILSMMGQ 262 (456)
T ss_dssp ----------
T ss_pred hhHHHHHHhh
Confidence 9999999954
No 62
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.90 E-value=2.9e-25 Score=276.25 Aligned_cols=153 Identities=20% Similarity=0.238 Sum_probs=113.5
Q ss_pred cCCcccccccchHHHHHHHhhhccccCCc----------hHHHhh------cCCC----------CCCc--eEEeCCCCC
Q 044198 456 VPNVRWADIGGLDTVKRELQETVQYPVEH----------PEMFEK------FGMS----------PSRG--VLFYGPPGC 507 (772)
Q Consensus 456 ~~~v~~~~i~g~~~~k~~l~~~i~~~~~~----------~~~~~~------~~~~----------~~~~--iLl~GppGt 507 (772)
.+.+.|++++|++++|+.+.+.+.|++++ ++.++. .|+. +|+| +|+||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 35589999999999999999999999854 455555 2332 3344 999999999
Q ss_pred chhHHHHHHHHHhCC---c--EEEEec--ccch--------hccccc----chHHHHHHHHHHHhCCCeEEEEcCchhhh
Q 044198 508 GKTLLAKAIANECQA---N--FISIKG--PELL--------TMWFGE----SEANVRDVFDKARQSAPCVLFFDELDSIA 568 (772)
Q Consensus 508 GKT~la~alA~~~~~---~--~i~v~~--~~l~--------~~~vg~----se~~i~~vf~~a~~~~p~ilfiDEid~l~ 568 (772)
|||+||++++.+... + |+.+.. ++++ ++|+++ +|+.++.+|.+|++.+||++|+||+|+|+
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 999999999988744 4 555543 3344 778888 89999999999999999999999999999
Q ss_pred hcc---CCCCC-CCCchhHHHHHHHHHhcCCCCCCcEEEEeecCC
Q 044198 569 IQR---GSSVG-DGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNR 609 (772)
Q Consensus 569 ~~r---~~~~~-~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~ 609 (772)
+.+ +.... +.+...|+++++|++|+++....+|+|| +||+
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1217 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eecc
Confidence 984 22211 2345789999999999998888888888 7776
No 63
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=99.90 E-value=9.2e-23 Score=198.10 Aligned_cols=160 Identities=26% Similarity=0.315 Sum_probs=137.6
Q ss_pred CeEEEecccCCC--CcEEEECHhhHhhcCCCCCCeEEEeecCcceEEEEEEeC--CCCCCCeEEEcHHHHhhcCCCCCCe
Q 044198 10 NRLIVEEALQDD--NSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDD--DTCDASKIRMNKVVRSNLRLRLGDL 85 (772)
Q Consensus 10 ~~~~v~~~~~~~--~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~r~~~~~~~~~~ 85 (772)
-+|+|++|.++| +++|||+|++|++||+.+||+|+|+|+++ ++|++|+. ++++.+.|+||+.+|+|+|+++||.
T Consensus 7 i~L~V~~a~~~D~gr~ivrl~p~~m~~Lgl~~GD~V~I~G~r~--t~a~v~~~~~ed~~~g~Irid~~~R~N~gv~iGD~ 84 (185)
T 1cz4_A 7 IILRVAEANSTDPGMSRVRLDESSRRLLDAEIGDVVEIEKVRK--TVGRVYRARPEDENKGIVRIDSVMRNNCGASIGDK 84 (185)
T ss_dssp EEEEEECCSSCCCCSSEEEECHHHHHTTCCCTTCEEEEESSSE--EEEEEEECSSTTTTTSEEECCHHHHHHHTCCTTCE
T ss_pred EEEEEecCcccccCCCEEEECHHHHHHcCCCCCCEEEEEcCCe--EEEEEEEcCcCcCCCCEEEeCHHHHhccCCCCCCE
Confidence 379999999987 88899999999999999999999999864 55666664 6889999999999999999999999
Q ss_pred EEEEEccCCCCCceeEeeccc---ccccCcchhhHHHHHHHhhhcCCcCccCCcEEEEec---Cce-eEEEEEEEecCCc
Q 044198 86 VSVKICNDVVNATKMHVLPLH---DTIEGITGNLFDVYLKPYFLGHYRPVRKGDLFLVRG---GMR-SVKFKVVDTEPGE 158 (772)
Q Consensus 86 v~v~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~---~~~-~~~f~v~~~~~~~ 158 (772)
|+|++ .+++.|++|+++|.. .+.. +.+. +..+++++|. .+||.+||.|.+.. .++ .+.|+|++++|.+
T Consensus 85 V~V~~-~~~~~A~~V~l~P~~~~~~~~~-~~~~-~~~~l~~~l~--~rpv~~Gd~v~v~~~~~~g~~~~~f~Vv~t~P~~ 159 (185)
T 1cz4_A 85 VKVRK-VRTEIAKKVTLAPIIRKDQRLK-FGEG-IEEYVQRALI--RRPMLEQDNISVPGLTLAGQTGLLFKVVKTLPSK 159 (185)
T ss_dssp EEEEE-ECCCBCSEEEEEEECSTTCCSC-CCSS-HHHHHHHHHT--TCEECTTCEECCSSCCCSSCCCCEEEEEEESSSS
T ss_pred EEEEE-CCCCCccEEEEecccccccccc-cccc-hHHHHHHHHC--CCcccCCCEEEEeeeccCCCeEEEEEEEEEcCCC
Confidence 99999 569999999999985 4332 3233 3679999997 58999999999863 446 7899999999999
Q ss_pred -eEEeCCCceEEecCCCCc
Q 044198 159 -YCHITPKTEIFCEGEPLK 176 (772)
Q Consensus 159 -~~~~~~~t~i~~~~~~~~ 176 (772)
+++++++|.|.+.+.|..
T Consensus 160 ~~v~Vt~~T~I~i~~~p~~ 178 (185)
T 1cz4_A 160 VPVEIGEETKIEIREEPAS 178 (185)
T ss_dssp SCEECCTTCEEEECSCCST
T ss_pred ceEEEcCCeEEEECCccch
Confidence 999999999999876653
No 64
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.89 E-value=3.7e-23 Score=219.14 Aligned_cols=175 Identities=22% Similarity=0.309 Sum_probs=138.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHH----HHcCCceEEecccccc
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVA----EKNAPSIIFIDEIDSI 294 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a----~~~~p~il~iDEid~l 294 (772)
+..+|.++||+||||||||++|+++|+.++.+++.++++++.+.+.|+.+..++.+|..+ +...|+||||||+|.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567789999999999999999999999999999999999999999999999999999988 4668999999999999
Q ss_pred ccCCCCCc--hhhHHHHHHHHHHHhhccc-----------ccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHH
Q 044198 295 APKREKTH--GEVEKRIVSQLLTLMDGMK-----------SRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVG 361 (772)
Q Consensus 295 ~~~~~~~~--~~~~~~v~~~L~~lld~~~-----------~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~ 361 (772)
++...... ....+++...|++++|+.. ...++++|+|||.++.+|++++|+|||+..+. .|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHH
Confidence 88544221 1234567789999998443 45679999999999999999999999999887 579999
Q ss_pred HHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHH
Q 044198 362 RLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAAL 399 (772)
Q Consensus 362 r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l 399 (772)
|.+|++.+... .+++...++..+.+|+++++..+
T Consensus 190 r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 190 RIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp HHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHHH
T ss_pred HHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHHH
Confidence 99999977653 35668889999999999998643
No 65
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.86 E-value=7.7e-22 Score=210.79 Aligned_cols=216 Identities=21% Similarity=0.266 Sum_probs=172.8
Q ss_pred cccccchHHHHHHHhhhccccCCchHHHhhcCCCC---CCceEEeCCCCCchhHHHHHHHHHh-------CCcEEEEecc
Q 044198 461 WADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSP---SRGVLFYGPPGCGKTLLAKAIANEC-------QANFISIKGP 530 (772)
Q Consensus 461 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~~iLl~GppGtGKT~la~alA~~~-------~~~~i~v~~~ 530 (772)
+.+++|++.+++.+.+.+.+.. .+..+.++|+.+ ..++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 4479999999999999887644 355666666543 4469999999999999999999988 3489999999
Q ss_pred cchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCC
Q 044198 531 ELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRP 610 (772)
Q Consensus 531 ~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 610 (772)
++.+.|+|.++..+..+|+.+. ++||||||+|.+...++. ......+++.|+..|+.. ..++++|++||.+
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~ 179 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENN--RDDLVVILAGYAD 179 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHC--TTTCEEEEEECHH
T ss_pred HhhhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCc----ccccHHHHHHHHHHHhcC--CCCEEEEEeCChH
Confidence 9999999999999999998873 469999999999865432 223578899999999964 4578899999875
Q ss_pred C-----CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHH-------cCCCCHHHHHHHHHH
Q 044198 611 D-----MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKY-------THGFSGADITEICQR 677 (772)
Q Consensus 611 ~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~-------~~g~sg~di~~l~~~ 677 (772)
+ .++|++.+ ||+.+++|++|+.+++.+|++.++++.... ++..+..+++. ...-+++++.++++.
T Consensus 180 ~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~ 257 (309)
T 3syl_A 180 RMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDR 257 (309)
T ss_dssp HHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHH
Confidence 4 35799998 999999999999999999999999876654 33345556654 222358999999999
Q ss_pred HHHHHHHHHHH
Q 044198 678 ACKCAIREEIE 688 (772)
Q Consensus 678 a~~~a~~~~~~ 688 (772)
|...+..+...
T Consensus 258 a~~~~~~r~~~ 268 (309)
T 3syl_A 258 ARLRQANRLFT 268 (309)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99888777664
No 66
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.84 E-value=6e-22 Score=217.93 Aligned_cols=169 Identities=19% Similarity=0.264 Sum_probs=84.1
Q ss_pred ccccchHHHHHHHhhhccccCCchHHHhhcCC-CCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchh-ccccc
Q 044198 462 ADIGGLDTVKRELQETVQYPVEHPEMFEKFGM-SPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT-MWFGE 539 (772)
Q Consensus 462 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~-~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~-~~vg~ 539 (772)
++|+|++++|+.+...+.+++++...+..+.. .+++++||+||||||||++|+++|..++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 57899999999999888776655554444333 25688999999999999999999999999999999999988 59995
Q ss_pred -chHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEee-cCCCCCCCccc
Q 044198 540 -SEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGA-TNRPDMIDPAL 617 (772)
Q Consensus 540 -se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a-Tn~~~~ld~al 617 (772)
++..++.+|+.|... +++||++.+... ......++++++||++||++.....+ +++ ||+|+.||+|+
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~-----~~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL 163 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRAR-----AEDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKL 163 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhcc-----chhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHH
Confidence 799999999999775 458998876432 23344789999999999999766554 455 99999999999
Q ss_pred cCCCCccccccCCCCCHH-HHHHHH
Q 044198 618 LRPGRLDQLIYIPLPDEH-SRLQIF 641 (772)
Q Consensus 618 lrpgRf~~~i~~~~p~~~-~r~~Il 641 (772)
+||||||+.|++++|+.. .|.+||
T Consensus 164 ~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 164 REGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -------------------------
T ss_pred HcCCCcceEEEEcCCCCccchhhhh
Confidence 999999999999999987 788876
No 67
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.83 E-value=3e-22 Score=229.48 Aligned_cols=260 Identities=21% Similarity=0.291 Sum_probs=173.2
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchh--
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT-- 534 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~-- 534 (772)
...-++++.|++++++.+.+.+..... .... ++.+++|+||||||||++|+++|..++.++..+++..+..
T Consensus 76 ~~~l~~di~G~~~vk~~i~~~~~l~~~------~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~ 148 (543)
T 3m6a_A 76 GRLLDEEHHGLEKVKERILEYLAVQKL------TKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDES 148 (543)
T ss_dssp GGTHHHHCSSCHHHHHHHHHHHHHHHH------SSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHh------cccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhh
Confidence 344578899999999988765543110 0111 4667999999999999999999999999999998876543
Q ss_pred -------cccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCC----------
Q 044198 535 -------MWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSA---------- 597 (772)
Q Consensus 535 -------~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~---------- 597 (772)
.|+|.....+...|..+....| |+||||||.+...+.. ...+.||..||....
T Consensus 149 ~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~---------~~~~~LL~~ld~~~~~~~~~~~~~~ 218 (543)
T 3m6a_A 149 EIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG---------DPSSAMLEVLDPEQNSSFSDHYIEE 218 (543)
T ss_dssp ---------------CHHHHHHTTCSSSE-EEEEEESSSCC------------------CCGGGTCTTTTTBCCCSSSCC
T ss_pred hhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc---------CHHHHHHHHHhhhhcceeecccCCe
Confidence 6788888889999998877776 9999999999765421 245668888875421
Q ss_pred ---CCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhh-----ccCCCC------CcccHHHHHH-H
Q 044198 598 ---KKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCL-----RKSPVS------KDIDLKAIAK-Y 662 (772)
Q Consensus 598 ---~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~-----~~~~~~------~~~~~~~la~-~ 662 (772)
..++++|+|||+++.|+|++++ ||+ +|+|++|+.+++.+|++.++ ++..+. ++..+..+++ .
T Consensus 219 ~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~ 295 (543)
T 3m6a_A 219 TFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYY 295 (543)
T ss_dssp CCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHH
T ss_pred eecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhC
Confidence 1578999999999999999999 996 79999999999999999877 222332 1233455554 3
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhh
Q 044198 663 THGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSDVRKYQAFANTLQQ 742 (772)
Q Consensus 663 ~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~~~~~~y~~~~~~~~~ 742 (772)
+...+.++|++.+..+...|..+.+... .....|+.+|+++++...+-.
T Consensus 296 ~~~~~vR~L~~~i~~~~~~aa~~~~~~~-------------~~~~~It~~~l~~~Lg~~~~~------------------ 344 (543)
T 3m6a_A 296 TREAGVRSLERQLAAICRKAAKAIVAEE-------------RKRITVTEKNLQDFIGKRIFR------------------ 344 (543)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHHHHTTC-------------CSCCEECTTTTHHHHCSCCSC------------------
T ss_pred ChhhchhHHHHHHHHHHHHHHHHHHhcC-------------CcceecCHHHHHHHhCCcccC------------------
Confidence 3234557777766666655554443210 122468999999988654221
Q ss_pred ccCCCChhhcccCCCCCcccCCCCCCCC
Q 044198 743 SRGFGSSAAANNVIPVSSFANGDGYGDL 770 (772)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (772)
+.........+.+.|+||+..+|++
T Consensus 345 ---~e~~~~~~~~g~v~g~a~~~~~g~~ 369 (543)
T 3m6a_A 345 ---YGQAETEDQVGVVTGLAYTTVGGDT 369 (543)
T ss_dssp ---CSTTTCCCBSSEEEEEEEETTEEEE
T ss_pred ---chhhhccccccccccccccCCCccc
Confidence 1122334566778899999887765
No 68
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.83 E-value=1.4e-20 Score=206.20 Aligned_cols=220 Identities=20% Similarity=0.262 Sum_probs=165.1
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCC--cEEEEecccchh
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISIKGPELLT 534 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~--~~i~v~~~~l~~ 534 (772)
|...|+++.|.+.+++.+...... + ..+..++.++||+||||||||++|+++|..++. +++.+++.++.+
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~-------~-~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEM-------I-REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH-------H-HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHH-------H-HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 555699999999998876544322 1 124455678999999999999999999999874 888888777544
Q ss_pred cccc-------------------------------------------------cchHHHHHHHHHHHh-----C----CC
Q 044198 535 MWFG-------------------------------------------------ESEANVRDVFDKARQ-----S----AP 556 (772)
Q Consensus 535 ~~vg-------------------------------------------------~se~~i~~vf~~a~~-----~----~p 556 (772)
.+++ +....++..|..+.. . .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 4332 224455666655433 1 26
Q ss_pred eEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeec-----------CCCCCCCccccCCCCccc
Q 044198 557 CVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGAT-----------NRPDMIDPALLRPGRLDQ 625 (772)
Q Consensus 557 ~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT-----------n~~~~ld~allrpgRf~~ 625 (772)
+||||||+|.+. ....+.|+..++... ..+++++++ |.++.+++++++ ||..
T Consensus 191 ~vl~IDEi~~l~-------------~~~~~~L~~~le~~~--~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~ 253 (368)
T 3uk6_A 191 GVLFIDEVHMLD-------------IESFSFLNRALESDM--APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI 253 (368)
T ss_dssp CEEEEESGGGSB-------------HHHHHHHHHHTTCTT--CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE
T ss_pred ceEEEhhccccC-------------hHHHHHHHHHhhCcC--CCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE
Confidence 799999999883 456788888887543 245555544 357889999998 9985
Q ss_pred cccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccc
Q 044198 626 LIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAG 704 (772)
Q Consensus 626 ~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 704 (772)
+.|++|+.+++.+|++..+.+.... ++..++.+++.+.+.+.+++.++|+.|...|..+..
T Consensus 254 -i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~----------------- 315 (368)
T 3uk6_A 254 -VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKG----------------- 315 (368)
T ss_dssp -EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred -EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC-----------------
Confidence 8999999999999999988765443 345578888888767999999999999988865421
Q ss_pred ccccccHHHHHHHHhhC
Q 044198 705 EVAEIKKEHFEESMKYA 721 (772)
Q Consensus 705 ~~~~i~~~~~~~al~~~ 721 (772)
..|+.+|+.+++..+
T Consensus 316 --~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 316 --TEVQVDDIKRVYSLF 330 (368)
T ss_dssp --SSBCHHHHHHHHHHS
T ss_pred --CCCCHHHHHHHHHHh
Confidence 269999999999884
No 69
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.80 E-value=1.1e-19 Score=194.00 Aligned_cols=245 Identities=19% Similarity=0.292 Sum_probs=168.5
Q ss_pred ccccchHHHHHHHhhhccccCCchHHHhhc-CCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchh-ccccc
Q 044198 462 ADIGGLDTVKRELQETVQYPVEHPEMFEKF-GMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT-MWFGE 539 (772)
Q Consensus 462 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~-~~vg~ 539 (772)
+++.|++.+++.+...+..++........+ .-.++.++||+||||||||++|+++|..++.+++.++++++.. .|+|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 458899999998887765422111100000 0134678999999999999999999999999999999998876 56665
Q ss_pred c-hHHHHHHHHHH-----HhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC--------CCCcEEEEe
Q 044198 540 S-EANVRDVFDKA-----RQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS--------AKKTVFVIG 605 (772)
Q Consensus 540 s-e~~i~~vf~~a-----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~--------~~~~v~vi~ 605 (772)
. +..++.+|..+ ....++||||||+|.+...+... +.......+.+.|+..|++.. ...++++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~-~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS-GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC-SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc-ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 4 45577776533 11235799999999997665321 111112345788999998742 234678888
Q ss_pred e----cCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhh-----------ccCCC--C-CcccHHHHHHHc----
Q 044198 606 A----TNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCL-----------RKSPV--S-KDIDLKAIAKYT---- 663 (772)
Q Consensus 606 a----Tn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~-----------~~~~~--~-~~~~~~~la~~~---- 663 (772)
+ ++.++.+++++++ ||+.+++|++|+.+++.+|++..+ ..... . ++..++.|++.+
T Consensus 174 ~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 251 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVN 251 (310)
T ss_dssp EECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHH
T ss_pred cCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhc
Confidence 8 5678899999997 999889999999999999998421 11221 1 334466777765
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCC
Q 044198 664 ---HGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYAR 722 (772)
Q Consensus 664 ---~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~ 722 (772)
.+.+.+++.++|..+...+..+.... .+....|+.+|+++++....
T Consensus 252 ~~~~~g~~R~l~~~l~~~~~~~~~~~~~~-------------~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 252 EKTENIGARRLHTVMERLMDKISFSASDM-------------NGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HHSCCCTTHHHHHHHHHHSHHHHHHGGGC-------------TTCEEEECHHHHHHHTCSSS
T ss_pred ccccccCcHHHHHHHHHHHHhhhcCCccc-------------cCCEEEEeeHHHHHHHHhhh
Confidence 25688999999998876654322100 01123599999999998763
No 70
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.78 E-value=2.6e-18 Score=185.89 Aligned_cols=215 Identities=20% Similarity=0.258 Sum_probs=162.8
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhccc
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 537 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~v 537 (772)
..+|+++.|.+.+++.+...+..... .-.+..++||+||||||||++|+++|..++.+|+.++++.+.
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~---- 92 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE---- 92 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC----
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc----
Confidence 34789999999999998877654211 123456799999999999999999999999999999987652
Q ss_pred ccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCC----------------CCcE
Q 044198 538 GESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSA----------------KKTV 601 (772)
Q Consensus 538 g~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~----------------~~~v 601 (772)
....+..++.. ...+++|||||||.+. ....+.|+..|+...- ..++
T Consensus 93 --~~~~~~~~~~~--~~~~~vl~lDEi~~l~-------------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 93 --KSGDLAAILTN--LSEGDILFIDEIHRLS-------------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp --SHHHHHHHHHT--CCTTCEEEEETGGGCC-------------HHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred --chhHHHHHHHh--ccCCCEEEEechhhcC-------------HHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 23344455543 2456899999999883 4567778888876421 1248
Q ss_pred EEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHH
Q 044198 602 FVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACK 680 (772)
Q Consensus 602 ~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~ 680 (772)
++|+|||++..+++++++ ||+..+.+++|+.+++.+|++.++.+.... .+..+..+++.+.| +.+++.++++.|..
T Consensus 156 ~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRD 232 (338)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHH
Confidence 999999999999999998 999999999999999999999998876654 34456777775544 67889998888766
Q ss_pred HHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCC
Q 044198 681 CAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARR 723 (772)
Q Consensus 681 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~ 723 (772)
.|.... ...|+.+++..++.....
T Consensus 233 ~a~~~~-------------------~~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 233 FADVND-------------------EEIITEKRANEALNSLGV 256 (338)
T ss_dssp HHHHTT-------------------CSEECHHHHHHHHHHHTC
T ss_pred HHHhhc-------------------CCccCHHHHHHHHHHhCC
Confidence 554221 125788888888776543
No 71
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.78 E-value=2.4e-18 Score=180.28 Aligned_cols=178 Identities=22% Similarity=0.308 Sum_probs=135.6
Q ss_pred cCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcccccc----hHHHHHHHHHHHhCCCeEEEEcCchh
Q 044198 491 FGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES----EANVRDVFDKARQSAPCVLFFDELDS 566 (772)
Q Consensus 491 ~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~s----e~~i~~vf~~a~~~~p~ilfiDEid~ 566 (772)
.+..++.++||+||||||||++|+++|..++.+|+.+++++. +.|.+ ...++.+|+.+....+++|||||+|.
T Consensus 59 ~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~ 135 (272)
T 1d2n_A 59 SDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIER 135 (272)
T ss_dssp CSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHH
T ss_pred cCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhh
Confidence 345677889999999999999999999999999999988763 44444 35788999999888889999999999
Q ss_pred hhhccCCCCCCCCchhHHHHHHHHHhcCCC-CCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCH-HHHHHHHHHh
Q 044198 567 IAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-AKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDE-HSRLQIFKSC 644 (772)
Q Consensus 567 l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~-~~r~~Il~~~ 644 (772)
+++.+..+ ......+++.|+..+++.. ...+++||+|||.++.+|++.++ +||+..+.+|+++. ++...++..
T Consensus 136 l~~~~~~~---~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~-~rf~~~i~~p~l~~r~~i~~i~~~- 210 (272)
T 1d2n_A 136 LLDYVPIG---PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIHVPNIATGEQLLEALEL- 210 (272)
T ss_dssp HTTCBTTT---TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT-TTSSEEEECCCEEEHHHHHHHHHH-
T ss_pred hhccCCCC---hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhh-cccceEEcCCCccHHHHHHHHHHh-
Confidence 98776432 1224677888888888764 44578899999999999984333 49999999987765 444555543
Q ss_pred hccCCCCCcccHHHHHHHcCCC----CHHHHHHHHHHHH
Q 044198 645 LRKSPVSKDIDLKAIAKYTHGF----SGADITEICQRAC 679 (772)
Q Consensus 645 ~~~~~~~~~~~~~~la~~~~g~----sg~di~~l~~~a~ 679 (772)
...+ .+.++..+++.+.|| +.+++.+++..|.
T Consensus 211 --~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 211 --LGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp --HTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred --cCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 2223 456788899998887 5677777776654
No 72
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.77 E-value=4e-19 Score=194.28 Aligned_cols=243 Identities=19% Similarity=0.269 Sum_probs=163.2
Q ss_pred cccchHHHHHHHhhhccccCCchHHHhh-cC-CCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhc-cccc
Q 044198 463 DIGGLDTVKRELQETVQYPVEHPEMFEK-FG-MSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM-WFGE 539 (772)
Q Consensus 463 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~-~~-~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~-~vg~ 539 (772)
.+.|++.+++.+...+............ .. ..++.++||+||||||||++|+++|..++.+|+.++++++... |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3689999999988777432211110000 01 1256789999999999999999999999999999999998754 8887
Q ss_pred c-hHHHHHHHHHH----HhCCCeEEEEcCchhhhhccCCCCCCCCc-hhHHHHHHHHHhcCCC-----------CCCcEE
Q 044198 540 S-EANVRDVFDKA----RQSAPCVLFFDELDSIAIQRGSSVGDGGG-VDRIVNQLLTEMDGLS-----------AKKTVF 602 (772)
Q Consensus 540 s-e~~i~~vf~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~-~~~~~~~lL~~ld~~~-----------~~~~v~ 602 (772)
. +..++.+|+.+ ....++||||||||.+...+......... ..++++.||+.|++.. ...+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 6 66778888775 34456899999999998776543212211 3459999999999531 011233
Q ss_pred EEeecCC--------C----------CC-----------------------------------CCccccCCCCccccccC
Q 044198 603 VIGATNR--------P----------DM-----------------------------------IDPALLRPGRLDQLIYI 629 (772)
Q Consensus 603 vi~aTn~--------~----------~~-----------------------------------ld~allrpgRf~~~i~~ 629 (772)
+|+|||. . .. ++|+|+. ||+.++.|
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 4444444 1 11 6788886 99999999
Q ss_pred CCCCHHHHHHHHHH----hh-------ccCCCC---CcccHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 044198 630 PLPDEHSRLQIFKS----CL-------RKSPVS---KDIDLKAIAK--YTHGFSGADITEICQRACKCAIREEIEKDIKK 693 (772)
Q Consensus 630 ~~p~~~~r~~Il~~----~~-------~~~~~~---~~~~~~~la~--~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~ 693 (772)
++|+.+++.+|++. ++ ...... .+.-++.|++ ....+.+++|++++..+...++.+.....
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~--- 330 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSME--- 330 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhccccc---
Confidence 99999999999986 22 111221 2333566765 34567789999999999888766532110
Q ss_pred ccCCCCCCcccccccccHHHHHHHHh
Q 044198 694 GQRENPEGAAGEVAEIKKEHFEESMK 719 (772)
Q Consensus 694 ~~~~~~~~~~~~~~~i~~~~~~~al~ 719 (772)
......|+.+++++.+.
T Consensus 331 ---------~~~~~~I~~~~v~~~~~ 347 (363)
T 3hws_A 331 ---------DVEKVVIDESVIDGQSE 347 (363)
T ss_dssp ---------CSEEEECHHHHTTCCSC
T ss_pred ---------CCceeEEcHHHHhCcCC
Confidence 00223578877776553
No 73
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.77 E-value=5.7e-18 Score=180.67 Aligned_cols=211 Identities=17% Similarity=0.241 Sum_probs=160.2
Q ss_pred cccCcHHHHHHHHHHHHcccCChhHHHHhCCCCC---ceEEEECCCCCcHHHHHHHHHHHh-------CCeEEEEechhh
Q 044198 190 DVGGVRKQLGQIREVVELPLRHPQIFKALGVKPP---KGILLHGPPGTGKTLLARAIANET-------GCYFLCINGPEI 259 (772)
Q Consensus 190 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~---~~vLL~GppGtGKT~Lar~la~~l-------~~~~~~v~~~~~ 259 (772)
+++|+++.++.|++++..+. .+...+.+|+..+ .++||+||||||||++|+++|+.+ ..+++.+++.++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 69999999999999988754 3566666776543 469999999999999999999987 337899999999
Q ss_pred hhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCC---
Q 044198 260 MSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPN--- 336 (772)
Q Consensus 260 ~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~--- 336 (772)
.+.+.+.....+..+|..+ .+++|||||+|.+...+.. ......+.+.|+..++.. ..++.+|+++|+..
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~~~~~ 183 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENN--RDDLVVILAGYADRMEN 183 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHC--TTTCEEEEEECHHHHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcC--CCCEEEEEeCChHHHHH
Confidence 9989998888888888776 4579999999999865432 223456778888888864 35678888887653
Q ss_pred --CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHh------cC-CchhhHHHHHHHHHHH
Q 044198 337 --SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARET------HG-FVGADLAALCTEGAMQ 406 (772)
Q Consensus 337 --~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t------~g-~~~~dl~~l~~~a~~~ 406 (772)
.++|++++ ||+..++|+.|+.+++.+|++.++...... .+..+..++... .. -..+++..++..+...
T Consensus 184 ~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~ 261 (309)
T 3syl_A 184 FFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLR 261 (309)
T ss_dssp HHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHH
Confidence 35799998 999999999999999999999887654432 122344454442 22 2367888888887765
Q ss_pred hhhh
Q 044198 407 CIRE 410 (772)
Q Consensus 407 ~~~~ 410 (772)
+..+
T Consensus 262 ~~~r 265 (309)
T 3syl_A 262 QANR 265 (309)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 74
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.75 E-value=1.7e-17 Score=178.20 Aligned_cols=233 Identities=20% Similarity=0.275 Sum_probs=163.2
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhccc
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 537 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~v 537 (772)
...|+++.|.+..++.+...+.... . .-.++.++||+||||||||++|++++..++.+++.++++.+..
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~-------~-~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAK-------A-RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHH-------H-HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHH-------c-cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 3468899999999888877664321 1 0124567999999999999999999999999999998876521
Q ss_pred ccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC----------------CCCcE
Q 044198 538 GESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS----------------AKKTV 601 (772)
Q Consensus 538 g~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~----------------~~~~v 601 (772)
...+...|..+ ...+++|||||+|.+. ....+.|+..|+... ...++
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l~-------------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRLS-------------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSCC-------------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCcccc-------------cchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 23333333321 1456899999999873 334566677666431 11357
Q ss_pred EEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHH
Q 044198 602 FVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACK 680 (772)
Q Consensus 602 ~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~ 680 (772)
.+|++||+++.+++++.+ ||+.++.+++|+.+++.++++.++.+.+.. ++..+..+++.+.| +.+++.++++.+..
T Consensus 140 ~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRD 216 (324)
T ss_dssp EEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTT
T ss_pred EEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 899999999999999998 998899999999999999999998766554 34457788888865 56888888887754
Q ss_pred HHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCC---CCCHHHHHHHHHHHHHH
Q 044198 681 CAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARR---SVSDSDVRKYQAFANTL 740 (772)
Q Consensus 681 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~---s~~~~~~~~y~~~~~~~ 740 (772)
.|... ....|+.+++..++..... +++..+.+....+.+.+
T Consensus 217 ~a~~~-------------------~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~ 260 (324)
T 1hqc_A 217 FAQVA-------------------GEEVITRERALEALAALGLDELGLEKRDREILEVLILRF 260 (324)
T ss_dssp TSTTT-------------------SCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHS
T ss_pred HHHHh-------------------cCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHh
Confidence 43211 0124777777777665432 34444444444444443
No 75
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.73 E-value=1.2e-17 Score=186.57 Aligned_cols=193 Identities=16% Similarity=0.194 Sum_probs=142.4
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh-----CCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhc
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQ 570 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~-----~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~ 570 (772)
+.+++|+||||||||+||+++++.+ +.+++.++++++...+.+.........|.......+++|||||++.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 5679999999999999999999988 78899999988766554443333233455544436789999999998532
Q ss_pred cCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCC---CCccccCCCCcc--ccccCCCCCHHHHHHHHHHhh
Q 044198 571 RGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDM---IDPALLRPGRLD--QLIYIPLPDEHSRLQIFKSCL 645 (772)
Q Consensus 571 r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~ 645 (772)
+...+.|+..++.+...+..+||++.+.|.. +++++++ ||. .++.+++|+.++|.+|++..+
T Consensus 210 -----------~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~ 276 (440)
T 2z4s_A 210 -----------TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKML 276 (440)
T ss_dssp -----------HHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 1334556666655444556677766666665 7889987 896 799999999999999999988
Q ss_pred ccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCC
Q 044198 646 RKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYAR 722 (772)
Q Consensus 646 ~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~ 722 (772)
...++. ++..+..|++.+.| +.+++.+++..+...|.... ..|+.+++++++....
T Consensus 277 ~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~~--------------------~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 277 EIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTG--------------------KEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHSS--------------------SCCCHHHHHHHTSTTT
T ss_pred HHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhC--------------------CCCCHHHHHHHHHHHh
Confidence 754433 23347888888765 89999999999877764321 1478888888887765
No 76
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.73 E-value=6.1e-17 Score=210.42 Aligned_cols=324 Identities=17% Similarity=0.214 Sum_probs=182.2
Q ss_pred CCceEEEECCCCCcHHHHHHH-HHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHH---------------HcCCce
Q 044198 222 PPKGILLHGPPGTGKTLLARA-IANETGCYFLCINGPEIMSKMAGESESNLREAFNVAE---------------KNAPSI 285 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~-la~~l~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~---------------~~~p~i 285 (772)
.++++||+||||||||++|+. +++..+..++.++++...+ ...+...+.... .+.++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 367999999999999999954 5444466777888754432 233444443321 123469
Q ss_pred EEeccccccccCCCCCchhhHHHHHHHHHHHhh--cccc--------cCceEEEEeeCCC-----CCCChhhhccCCcee
Q 044198 286 IFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMD--GMKS--------RAHVMVIGATNRP-----NSIDPALRRSGRFDK 350 (772)
Q Consensus 286 l~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld--~~~~--------~~~v~vI~atn~~-----~~ld~al~r~gRf~~ 350 (772)
+||||++.....+.+ ... ..+.|..+++ ++.. -.++.+|||||++ ..|++++.| || .
T Consensus 1340 lFiDEinmp~~d~yg--~q~---~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~ 1411 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYG--SQN---VVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-A 1411 (2695)
T ss_dssp EEEETTTCSCCCSSS--CCH---HHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-E
T ss_pred EEecccccccccccC--chh---HHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-e
Confidence 999999975444332 222 2333444443 2211 1358999999999 489999999 88 6
Q ss_pred EEEeCCCCHHHHHHHHHHHhccCC-cccccc--hhHH------------------HHHhcCCchhhHHHHHHHHHHHhhh
Q 044198 351 EIDIGVPDEVGRLEVLRIHTKNMK-LAEDVN--LETV------------------ARETHGFVGADLAALCTEGAMQCIR 409 (772)
Q Consensus 351 ~i~i~~p~~~~r~~Il~~~~~~~~-l~~~~~--l~~l------------------a~~t~g~~~~dl~~l~~~a~~~~~~ 409 (772)
.+.++.|+.+++..|+..++..+. ...++. ...+ ++...-|+.+|+..+++-.......
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~~~~~ 1491 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAINT 1491 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHhcCch
Confidence 799999999999999987764321 111110 0000 1123467788887776543221000
Q ss_pred hhccccccccchhhHhh------hhhhhccchh---h----hhhhhhcCcccc------hh-hhcccCCcccccccchHH
Q 044198 410 EKMDLIDLEEDTIDAEV------LSSMYVTNEN---L----NAAVAITSPSAL------RE-IAVEVPNVRWADIGGLDT 469 (772)
Q Consensus 410 ~~~~~~~~~~~~~~~~~------~~~~~v~~~d---~----~~al~~~~ps~~------~~-~~~~~~~v~~~~i~g~~~ 469 (772)
.... .....+.... ....-++.+| | ...+....+... +. .....-...|+++.. ++
T Consensus 1492 ~~~~---~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f~~~~~~~~~~~~~~f~df~~~~Y~~v~~-~~ 1567 (2695)
T 4akg_A 1492 GPRQ---TLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSGLLSLDFKEVNK-TD 1567 (2695)
T ss_dssp SSCC---CHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHSCCSCCCCCSTTTCCEESSSSSSCEECCH-HH
T ss_pred hhhc---cHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccchhhhccCCceeeecCCCcceecCH-HH
Confidence 0000 0000000000 0000111111 1 111111111000 00 000001123455532 44
Q ss_pred HHHHHhhhcc---------------ccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchh
Q 044198 470 VKRELQETVQ---------------YPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 534 (772)
Q Consensus 470 ~k~~l~~~i~---------------~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~ 534 (772)
+++.+.+.+. ..+.|.-++.+.-.+|.+++||+|++||||++|++..|..+++.++.+..+.-++
T Consensus 1568 l~~~l~~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~~~Y~ 1647 (2695)
T 4akg_A 1568 LVNFIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSN 1647 (2695)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCCTTCC
T ss_pred HHHHHHHHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEeeCCCC
Confidence 4444444332 1233444555555678889999999999999999999999999999998775432
Q ss_pred cccccchHHHHHHHHHHHh-CCCeEEEEcCch
Q 044198 535 MWFGESEANVRDVFDKARQ-SAPCVLFFDELD 565 (772)
Q Consensus 535 ~~vg~se~~i~~vf~~a~~-~~p~ilfiDEid 565 (772)
..+-...++.++.+|.. ..|.+++|+|.+
T Consensus 1648 --~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1677 (2695)
T 4akg_A 1648 --LSDFDMILKKAISDCSLKESRTCLIIDESN 1677 (2695)
T ss_dssp --HHHHHHHHHHHHHHHHHSCCCEEEEEETTT
T ss_pred --HHHHHHHHHHHHHHcCCCCCceEEEEeccc
Confidence 22345789999999854 456777787653
No 77
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.72 E-value=8.5e-18 Score=187.52 Aligned_cols=229 Identities=21% Similarity=0.304 Sum_probs=158.4
Q ss_pred CcccccccchHHHH---HHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchh
Q 044198 458 NVRWADIGGLDTVK---RELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 534 (772)
Q Consensus 458 ~v~~~~i~g~~~~k---~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~ 534 (772)
..+|+++.|++.+. +.|...+.. ....++||+||||||||++|+++|+.++.+|+.+++..
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~-------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~--- 85 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEA-------------GHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT--- 85 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHH-------------TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT---
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc---
Confidence 35688999999887 555554432 12257999999999999999999999999999998653
Q ss_pred cccccchHHHHHHHHHHHh----CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeec--C
Q 044198 535 MWFGESEANVRDVFDKARQ----SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGAT--N 608 (772)
Q Consensus 535 ~~vg~se~~i~~vf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT--n 608 (772)
.....++.+|..+.. ..+.+|||||||.+... ..+.||..|+. ..+++|++| |
T Consensus 86 ----~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-------------~q~~LL~~le~----~~v~lI~att~n 144 (447)
T 3pvs_A 86 ----SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS-------------QQDAFLPHIED----GTITFIGATTEN 144 (447)
T ss_dssp ----CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHT----TSCEEEEEESSC
T ss_pred ----CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH-------------HHHHHHHHHhc----CceEEEecCCCC
Confidence 234567777776653 45789999999998432 34458888875 346677666 4
Q ss_pred CCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCC-------CC-CcccHHHHHHHcCCCCHHHHHHHHHHHHH
Q 044198 609 RPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSP-------VS-KDIDLKAIAKYTHGFSGADITEICQRACK 680 (772)
Q Consensus 609 ~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~-------~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~ 680 (772)
....+++++++ |+. ++.+++|+.+++..|++..+.+.. +. ++..++.|++.+.| +.+++.+++..|..
T Consensus 145 ~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~ 220 (447)
T 3pvs_A 145 PSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMAD 220 (447)
T ss_dssp GGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHH
T ss_pred cccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 45689999998 987 788999999999999999887621 11 33457788888665 77888888887765
Q ss_pred HHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhcc
Q 044198 681 CAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSDVRKYQAFANTLQQSR 744 (772)
Q Consensus 681 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~~~~~~y~~~~~~~~~~~ 744 (772)
.+.... .....||.+++.+++........+..-..|..+..-.++-|
T Consensus 221 ~a~~~~-----------------~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksir 267 (447)
T 3pvs_A 221 MAEVDD-----------------SGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVR 267 (447)
T ss_dssp HSCBCT-----------------TSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHH
T ss_pred hccccc-----------------CCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHh
Confidence 432100 01136999999999987765554444455555554444434
No 78
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=99.72 E-value=3.9e-17 Score=157.65 Aligned_cols=162 Identities=17% Similarity=0.242 Sum_probs=128.7
Q ss_pred CCCCeEEEecccCCCCcEEEECHhhHhhcCCCCCCeEEEeecCcceEEEEEEeCC--CCCCCeEEEcHHHHhhcCCCCCC
Q 044198 7 KSPNRLIVEEALQDDNSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDDD--TCDASKIRMNKVVRSNLRLRLGD 84 (772)
Q Consensus 7 ~~~~~~~v~~~~~~~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~r~~~~~~~~~ 84 (772)
+-+..+.|.=.. -.++.|+|+++.|..|++.+||+|+|+|+++..+++|....+ +.+.+.|.||+.+|+|+|+++||
T Consensus 10 ~~~~~~~v~~~~-~~~~~vrL~~~~~~~L~~~~gd~VeI~g~~~t~~~~w~~~~~~~d~~~~~I~Id~~~r~n~gv~~Gd 88 (179)
T 1wlf_A 10 SGGAVVTVAFTN-ARDCFLHLPRRLVAQLHLLQNQAIEVASDHQPTYLSWVEGRHFNDQSENVAEINRQVGQKLGLSSGD 88 (179)
T ss_dssp -CCEEEEEEEEC-CSSSCEEECHHHHHHTTCCTTCCEEEESSSCCEEECEEECSSCC---CCEEEEEHHHHHHTTCCTTC
T ss_pred CCcEEEEEEEEC-CCCcEEECCHHHHHHcCCCCCcEEEEEeCCeeEEEEEECCCCcccCCCCEEEECHHHHhHCCCCCCC
Confidence 334556665333 368999999999999999999999999987655555554334 67889999999999999999999
Q ss_pred eEEEEEccCCCCCceeEeeccccc-ccCcchhhHHHHHHHhhhcCCcCccCCcEEEEecCc-eeEEEEEEEecC-CceEE
Q 044198 85 LVSVKICNDVVNATKMHVLPLHDT-IEGITGNLFDVYLKPYFLGHYRPVRKGDLFLVRGGM-RSVKFKVVDTEP-GEYCH 161 (772)
Q Consensus 85 ~v~v~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~-~~~~f~v~~~~~-~~~~~ 161 (772)
.|+|+++.+++.|++|+++|.+.. .+ + .+....+++.+|..+.|||..||.|.+...+ ..+.|+|+++.| .++++
T Consensus 89 ~V~V~~~~~~~~A~~V~laP~~~dD~e-i-~e~~a~~le~~Ll~QiR~v~~G~~i~v~~~g~~~i~f~V~~~~P~~~~v~ 166 (179)
T 1wlf_A 89 QVFLRPCSHVVSCQQVEVEPLSADDWE-I-LELHAISLEQHLLDQIRIVFPKAVVPIWVDQQTYIFIQIVTLMPAAPYGR 166 (179)
T ss_dssp EEEEEECSCCEECSEEEEEESSHHHHH-H-HHHSCSSHHHHHHHHCCEECTTCEEEEESSSSCEEEEEEEEEESCCSSEE
T ss_pred EEEEEECCCCccceEEEEEcCCcCCeE-E-ehhHHHHHHHHHhcCceeccCCCEEEEEecCCeEEEEEEEEeeCCCCeEE
Confidence 999999788999999999998531 11 1 1222457888888888999999999986443 678999999999 89999
Q ss_pred eCCCceEEec
Q 044198 162 ITPKTEIFCE 171 (772)
Q Consensus 162 ~~~~t~i~~~ 171 (772)
++++|.|.+.
T Consensus 167 It~~TeI~v~ 176 (179)
T 1wlf_A 167 LETNTKLLIQ 176 (179)
T ss_dssp CCTTCEEEEC
T ss_pred ECCCcEEEEe
Confidence 9999999885
No 79
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.72 E-value=4.8e-17 Score=174.88 Aligned_cols=170 Identities=17% Similarity=0.250 Sum_probs=127.7
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhcc
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQR 571 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r 571 (772)
.+.+++|+||||||||++|+++++.+ +.+++.+++.++...+.+.........|..... .+++|||||++.+...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~- 113 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGK- 113 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTC-
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCC-
Confidence 45679999999999999999999998 889999999988766655444333344444433 3679999999998532
Q ss_pred CCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCC---CCCccccCCCCcc--ccccCCCCCHHHHHHHHHHhhc
Q 044198 572 GSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPD---MIDPALLRPGRLD--QLIYIPLPDEHSRLQIFKSCLR 646 (772)
Q Consensus 572 ~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~~ 646 (772)
....+.++..++.....+..+|+++++.|+ .+++++.+ ||+ ..+.+++ +.++|.+|++..+.
T Consensus 114 ----------~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 114 ----------ERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred ----------hHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHH
Confidence 123444555555443345577888888776 67899987 996 6789999 99999999999987
Q ss_pred cCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 044198 647 KSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKC 681 (772)
Q Consensus 647 ~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~ 681 (772)
..++. ++..++.|++.+ -+.+++.+++..+...
T Consensus 181 ~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 181 EFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp HTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHc
Confidence 65544 344578888888 5789999988887765
No 80
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.70 E-value=2.7e-17 Score=180.58 Aligned_cols=244 Identities=17% Similarity=0.237 Sum_probs=154.2
Q ss_pred ccccchHHHHHHHhhhccccCCchHH------------------HhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc
Q 044198 462 ADIGGLDTVKRELQETVQYPVEHPEM------------------FEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN 523 (772)
Q Consensus 462 ~~i~g~~~~k~~l~~~i~~~~~~~~~------------------~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~ 523 (772)
+++.|++.+++.|...+......... ... ...+..++||+||||||||++|+++|..++.+
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~-~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~ 99 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEE-VELSKSNILLIGPTGSGKTLMAQTLAKHLDIP 99 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH-TTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccc-cccCCCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35789999999998776432222111 011 22356789999999999999999999999999
Q ss_pred EEEEecccch-hcccccc-hHHHHHHHHHHH----hCCCeEEEEcCchhhhhccCCCCCCCC-chhHHHHHHHHHhcCCC
Q 044198 524 FISIKGPELL-TMWFGES-EANVRDVFDKAR----QSAPCVLFFDELDSIAIQRGSSVGDGG-GVDRIVNQLLTEMDGLS 596 (772)
Q Consensus 524 ~i~v~~~~l~-~~~vg~s-e~~i~~vf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~-~~~~~~~~lL~~ld~~~ 596 (772)
|+.++++.+. ..|+|.. +..+..+|..+. ...++|+||||+|.+...+.......+ ....+++.||..|++..
T Consensus 100 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~ 179 (376)
T 1um8_A 100 IAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSL 179 (376)
T ss_dssp EEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCE
T ss_pred EEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccc
Confidence 9999998875 4567765 455666665432 235689999999999876543211111 13458999999999641
Q ss_pred -------------------CCCcEEEEeecCCC-----------------------------------------CCCCcc
Q 044198 597 -------------------AKKTVFVIGATNRP-----------------------------------------DMIDPA 616 (772)
Q Consensus 597 -------------------~~~~v~vi~aTn~~-----------------------------------------~~ld~a 616 (772)
...++++|+|||.. ..+.|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~ 259 (376)
T 1um8_A 180 VNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPE 259 (376)
T ss_dssp EC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHH
T ss_pred eecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChH
Confidence 12456788887721 124456
Q ss_pred ccCCCCccccccCCCCCHHHHHHHHHH----hhc---------cCCCC-CcccHHHHHHHcC--CCCHHHHHHHHHHHHH
Q 044198 617 LLRPGRLDQLIYIPLPDEHSRLQIFKS----CLR---------KSPVS-KDIDLKAIAKYTH--GFSGADITEICQRACK 680 (772)
Q Consensus 617 llrpgRf~~~i~~~~p~~~~r~~Il~~----~~~---------~~~~~-~~~~~~~la~~~~--g~sg~di~~l~~~a~~ 680 (772)
+++ ||+.++.|++++.++...|++. +++ ...+. ++.-+..|++... ..+.+++++++..+..
T Consensus 260 l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~ 337 (376)
T 1um8_A 260 LIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCL 337 (376)
T ss_dssp HHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH
T ss_pred Hhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 665 9988999999999999999962 111 11111 2334566666542 4678999999999988
Q ss_pred HHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhC
Q 044198 681 CAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYA 721 (772)
Q Consensus 681 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~ 721 (772)
.++.+..... .....|+.+++.++.+.+
T Consensus 338 ~~~~~~~~~~-------------~~~~~i~~~~v~~~~~~~ 365 (376)
T 1um8_A 338 DIMFDLPKLK-------------GSEVRITKDCVLKQAEPL 365 (376)
T ss_dssp HHHHTGGGGT-------------TSEEEECHHHHTTSSCCE
T ss_pred HHHhhccCCC-------------CCEEEEeHHHhcCCCCce
Confidence 7776543211 122368999988765443
No 81
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.68 E-value=5.8e-17 Score=185.63 Aligned_cols=167 Identities=26% Similarity=0.384 Sum_probs=118.2
Q ss_pred CccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh----
Q 044198 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS---- 261 (772)
Q Consensus 186 ~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~---- 261 (772)
.-.+++.|+++.++.+.+.+.+..... .+ ++.+++|+||||||||++++++|+.++.++..+++..+..
T Consensus 78 ~l~~di~G~~~vk~~i~~~~~l~~~~~------~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 78 LLDEEHHGLEKVKERILEYLAVQKLTK------SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp THHHHCSSCHHHHHHHHHHHHHHHHSS------SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhcc------cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 345679999999999977665432111 11 4567999999999999999999999999999998765432
Q ss_pred -----hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccccc-------------
Q 044198 262 -----KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSR------------- 323 (772)
Q Consensus 262 -----~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~------------- 323 (772)
.+.|.....+...|..+....| ++||||+|.+.+.... ...+.|+..++..+..
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~-------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG-------DPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc-------CHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 4455555666667776655555 9999999999765421 1345566777643211
Q ss_pred CceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHh
Q 044198 324 AHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHT 370 (772)
Q Consensus 324 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~ 370 (772)
.++++|+|||+++.++|+|++ ||. .|.++.|+.+++.+|++.++
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred cceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 568999999999999999999 995 69999999999999998765
No 82
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.68 E-value=2.8e-16 Score=164.45 Aligned_cols=198 Identities=21% Similarity=0.272 Sum_probs=134.8
Q ss_pred CccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh-cc
Q 044198 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSK-MA 264 (772)
Q Consensus 186 ~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~-~~ 264 (772)
.....+.|..+.++.+...... ....+...+..++.++||+||||||||++|+++|+.++.+++.+++++.... ..
T Consensus 30 ~~~~~~i~~~~~~~~i~~~~~~---l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~ 106 (272)
T 1d2n_A 30 YIMNGIIKWGDPVTRVLDDGEL---LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSE 106 (272)
T ss_dssp TCTTCCCCCSHHHHHHHHHHHH---HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCH
T ss_pred HHhcCCCCccHHHHHHHHHHHH---HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCch
Confidence 3344567777776666543111 0122333345667889999999999999999999999999999988753211 11
Q ss_pred cchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc-ccCceEEEEeeCCCCCCCh-hh
Q 044198 265 GESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK-SRAHVMVIGATNRPNSIDP-AL 342 (772)
Q Consensus 265 g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~-~~~~v~vI~atn~~~~ld~-al 342 (772)
+.....++.+|..+....+++|||||+|.++..+... ......+++.|..++++.. ....+++|+|||.++.+++ .+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l 185 (272)
T 1d2n_A 107 TAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEM 185 (272)
T ss_dssp HHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhh
Confidence 2233567888888877778999999999997654322 2334567777888887654 3356889999999988877 45
Q ss_pred hccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCc
Q 044198 343 RRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFV 392 (772)
Q Consensus 343 ~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~ 392 (772)
++ ||...+.+|.++. |.+|.+.......+ .+..+..++..+.||.
T Consensus 186 ~~--rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~ 230 (272)
T 1d2n_A 186 LN--AFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGKK 230 (272)
T ss_dssp TT--TSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTSE
T ss_pred hc--ccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCCC
Confidence 54 9998888866654 33343333222223 3446888899998873
No 83
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.68 E-value=7e-16 Score=155.26 Aligned_cols=201 Identities=20% Similarity=0.212 Sum_probs=145.1
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh-----CCcEEEEeccc
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPE 531 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~-----~~~~i~v~~~~ 531 (772)
+...|+++.|.+...+.+.+.+.. ....+++|+||||||||+++++++..+ ...++.+++++
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 445678899999988888877643 123359999999999999999999875 45677777765
Q ss_pred chhcccccchHHHHHHHHHHH------hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEe
Q 044198 532 LLTMWFGESEANVRDVFDKAR------QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIG 605 (772)
Q Consensus 532 l~~~~vg~se~~i~~vf~~a~------~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 605 (772)
..+ ...+...+.... ...+.+|||||+|.+. ....+.|+..++.. ..++.+|+
T Consensus 79 ~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-------------~~~~~~l~~~l~~~--~~~~~~i~ 137 (226)
T 2chg_A 79 ERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-------------ADAQAALRRTMEMY--SKSCRFIL 137 (226)
T ss_dssp TTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC-------------HHHHHHHHHHHHHT--TTTEEEEE
T ss_pred ccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcC-------------HHHHHHHHHHHHhc--CCCCeEEE
Confidence 322 122333332222 2457899999999983 23456677777653 34678889
Q ss_pred ecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 044198 606 ATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIR 684 (772)
Q Consensus 606 aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~ 684 (772)
+||.++.+++++.+ ||. .+.+++|+.++..++++..+.+.+.. ++..+..+++.+.| +.+.+.++++.++..+
T Consensus 138 ~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~-- 211 (226)
T 2chg_A 138 SCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG-- 211 (226)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC--
T ss_pred EeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC--
Confidence 99999999999998 998 99999999999999999888654443 34456777777755 5666666666554332
Q ss_pred HHHHHhhhhccCCCCCCcccccccccHHHHHHHHh
Q 044198 685 EEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMK 719 (772)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~ 719 (772)
..|+.+|+++++.
T Consensus 212 ----------------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 ----------------------EVVDADTIYQITA 224 (226)
T ss_dssp ----------------------SCBCHHHHHHHHH
T ss_pred ----------------------ceecHHHHHHHhc
Confidence 1599999999876
No 84
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.68 E-value=7e-16 Score=169.41 Aligned_cols=239 Identities=15% Similarity=0.186 Sum_probs=163.2
Q ss_pred ccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh---------CCcEEEEecccc
Q 044198 462 ADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC---------QANFISIKGPEL 532 (772)
Q Consensus 462 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~---------~~~~i~v~~~~l 532 (772)
+++.|.+...+.+...+...+. ...+.+++|+||||||||+++++++..+ +.+++.+++...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 6788888888888776643221 1346689999999999999999999988 788899997653
Q ss_pred hhc----------------ccccchHH-HHHHHHHHHhC-CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcC
Q 044198 533 LTM----------------WFGESEAN-VRDVFDKARQS-APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDG 594 (772)
Q Consensus 533 ~~~----------------~vg~se~~-i~~vf~~a~~~-~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~ 594 (772)
.+. ..|.+... ...+++..... .|++|||||+|.+...+ ....++..++..++.
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--------~~~~~l~~l~~~~~~ 161 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--------GGQDLLYRITRINQE 161 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST--------THHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC--------CCChHHHhHhhchhh
Confidence 221 11222333 44555554433 47899999999996542 134567777777765
Q ss_pred CCCCCcEEEEeecCCC---CCCCccccCCCCccc-cccCCCCCHHHHHHHHHHhhcc--CCC-CCcccHHHHHHHcC---
Q 044198 595 LSAKKTVFVIGATNRP---DMIDPALLRPGRLDQ-LIYIPLPDEHSRLQIFKSCLRK--SPV-SKDIDLKAIAKYTH--- 664 (772)
Q Consensus 595 ~~~~~~v~vi~aTn~~---~~ld~allrpgRf~~-~i~~~~p~~~~r~~Il~~~~~~--~~~-~~~~~~~~la~~~~--- 664 (772)
.....++.+|++||.+ +.+++++.+ ||.. .+.|++|+.+++.+|++..+.. .+. -.+..++.+++.+.
T Consensus 162 ~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 239 (387)
T 2v1u_A 162 LGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREH 239 (387)
T ss_dssp C-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSS
T ss_pred cCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhc
Confidence 4325578899999987 678889988 9975 8999999999999999988764 121 23445777887776
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCC--------CCCCHHHHHHHHHH
Q 044198 665 GFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYAR--------RSVSDSDVRKYQAF 736 (772)
Q Consensus 665 g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~--------~s~~~~~~~~y~~~ 736 (772)
| +.+.+.++|+.|...|..+. ...|+.+|+.+++.... .+.+..+...+..+
T Consensus 240 G-~~r~~~~~l~~a~~~a~~~~-------------------~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~l~a~ 299 (387)
T 2v1u_A 240 G-DARRALDLLRVAGEIAERRR-------------------EERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSI 299 (387)
T ss_dssp C-CHHHHHHHHHHHHHHHHHTT-------------------CSCBCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHHHHHHHHcC-------------------CCCcCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHH
Confidence 4 56888889998876664321 12578888888776652 23455555555555
Q ss_pred HHH
Q 044198 737 ANT 739 (772)
Q Consensus 737 ~~~ 739 (772)
...
T Consensus 300 ~~~ 302 (387)
T 2v1u_A 300 MML 302 (387)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 85
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.68 E-value=6.9e-16 Score=164.32 Aligned_cols=214 Identities=21% Similarity=0.342 Sum_probs=144.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhHHHHh-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh-hcccc-
Q 044198 190 DVGGVRKQLGQIREVVELPLRHPQIFKAL-GVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS-KMAGE- 266 (772)
Q Consensus 190 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~~-~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~-~~~g~- 266 (772)
++.|.+++++.+...+..++....+...+ .-..+.++||+||||||||++|+++++.++.+++.+++.++.. .+.+.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 58999999999988876533222111111 0134678999999999999999999999999999999988765 34442
Q ss_pred hHHHHHHHHHHH-----HHcCCceEEeccccccccCCCCCchh-hHHHHHHHHHHHhhccc--------ccCceEEEEee
Q 044198 267 SESNLREAFNVA-----EKNAPSIIFIDEIDSIAPKREKTHGE-VEKRIVSQLLTLMDGMK--------SRAHVMVIGAT 332 (772)
Q Consensus 267 ~~~~l~~~f~~a-----~~~~p~il~iDEid~l~~~~~~~~~~-~~~~v~~~L~~lld~~~--------~~~~v~vI~at 332 (772)
....++.++..+ ....+++|||||+|.+.+.......+ ....+.+.|+.++++.. ...++++|+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~ 175 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG 175 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcC
Confidence 234566665522 11235799999999998765433222 23345677888888642 23467888884
Q ss_pred ----CCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHh-------------ccCCc-ccccchhHHHHHhc-----
Q 044198 333 ----NRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHT-------------KNMKL-AEDVNLETVARETH----- 389 (772)
Q Consensus 333 ----n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~-------------~~~~l-~~~~~l~~la~~t~----- 389 (772)
+.+..+++++.+ ||+..+.++.|+.+++.+|++... ....+ -++..++.++..+.
T Consensus 176 ~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 253 (310)
T 1ofh_A 176 AFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEK 253 (310)
T ss_dssp CCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHH
T ss_pred CcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccc
Confidence 566789999998 999889999999999999998311 11111 11223555665542
Q ss_pred --CCchhhHHHHHHHHHH
Q 044198 390 --GFVGADLAALCTEGAM 405 (772)
Q Consensus 390 --g~~~~dl~~l~~~a~~ 405 (772)
+...+.+..++..+..
T Consensus 254 ~~~g~~R~l~~~l~~~~~ 271 (310)
T 1ofh_A 254 TENIGARRLHTVMERLMD 271 (310)
T ss_dssp SCCCTTHHHHHHHHHHSH
T ss_pred ccccCcHHHHHHHHHHHH
Confidence 4556677777766543
No 86
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.67 E-value=5.2e-16 Score=185.90 Aligned_cols=243 Identities=21% Similarity=0.239 Sum_probs=171.0
Q ss_pred cccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh----------CCcEEEEe
Q 044198 459 VRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISIK 528 (772)
Q Consensus 459 v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~----------~~~~i~v~ 528 (772)
-.|+++.|.+...+.+.+.+.. ....++||+||||||||++|+++|..+ +..++.++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred CCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 4678889998877777665432 346679999999999999999999887 56788888
Q ss_pred cccch--hcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEee
Q 044198 529 GPELL--TMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGA 606 (772)
Q Consensus 529 ~~~l~--~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a 606 (772)
...+. .+|.|+.++.++.+|+.+....++||||||+|.+.+.++.. +....+. +.|..+....++.+|++
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~----~~~~~~~----~~L~~~l~~~~~~~I~a 321 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS----GGQVDAA----NLIKPLLSSGKIRVIGS 321 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS----SCHHHHH----HHHSSCSSSCCCEEEEE
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC----cchHHHH----HHHHHHHhCCCeEEEEE
Confidence 87776 46889999999999999988888999999999998765321 1123333 33444444567889999
Q ss_pred cCCCC-----CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccC----CCC-CcccHHHHHHHcC-----CCCHHHH
Q 044198 607 TNRPD-----MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKS----PVS-KDIDLKAIAKYTH-----GFSGADI 671 (772)
Q Consensus 607 Tn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~----~~~-~~~~~~~la~~~~-----g~sg~di 671 (772)
||.++ .+|+++.| ||+ .+.|+.|+.++|.+||+.+...+ .+. .+..+..++..+. .+.+..+
T Consensus 322 t~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~ 398 (758)
T 1r6b_X 322 TTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_dssp ECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHH
T ss_pred eCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHH
Confidence 98753 57899998 998 79999999999999999877542 222 2334556665543 3556678
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCC----CCCHHHHHHHHHHHHHH
Q 044198 672 TEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARR----SVSDSDVRKYQAFANTL 740 (772)
Q Consensus 672 ~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~----s~~~~~~~~y~~~~~~~ 740 (772)
..++.+|+..+.... . ......|+.+|+.+++..... .++.++...+..+.+.+
T Consensus 399 i~lld~a~~~~~~~~---~------------~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l 456 (758)
T 1r6b_X 399 IDVIDEAGARARLMP---V------------SKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRL 456 (758)
T ss_dssp HHHHHHHHHHHHHSS---S------------CCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc---c------------cccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHH
Confidence 888887764432210 0 011236899999999887532 44555666666555544
No 87
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.67 E-value=2.6e-16 Score=170.84 Aligned_cols=217 Identities=19% Similarity=0.245 Sum_probs=137.7
Q ss_pred ccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCC-------c----
Q 044198 455 EVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQA-------N---- 523 (772)
Q Consensus 455 ~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~-------~---- 523 (772)
..+..+|+++.|.+.+++.+...... ....++||+||||||||++|++++..++. +
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~ 83 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSP 83 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCS
T ss_pred CCCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccc
Confidence 34667899999999887765433221 12346999999999999999999998863 1
Q ss_pred ----------------------EEEEecccchhcccccchHHHHHHHHHHH---------hCCCeEEEEcCchhhhhccC
Q 044198 524 ----------------------FISIKGPELLTMWFGESEANVRDVFDKAR---------QSAPCVLFFDELDSIAIQRG 572 (772)
Q Consensus 524 ----------------------~i~v~~~~l~~~~vg~se~~i~~vf~~a~---------~~~p~ilfiDEid~l~~~r~ 572 (772)
++.+........+.|.. .+...|..+. ...++++||||+|.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~---- 157 (350)
T 1g8p_A 84 NVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLE---- 157 (350)
T ss_dssp SGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC----
T ss_pred ccccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCC----
Confidence 11111110001111210 0112222210 1135799999999883
Q ss_pred CCCCCCCchhHHHHHHHHHhcCC----CC-------CCcEEEEeecCCCC-CCCccccCCCCccccccCCCC-CHHHHHH
Q 044198 573 SSVGDGGGVDRIVNQLLTEMDGL----SA-------KKTVFVIGATNRPD-MIDPALLRPGRLDQLIYIPLP-DEHSRLQ 639 (772)
Q Consensus 573 ~~~~~~~~~~~~~~~lL~~ld~~----~~-------~~~v~vi~aTn~~~-~ld~allrpgRf~~~i~~~~p-~~~~r~~ 639 (772)
....+.|+..|+.. .. ..++++|+|||..+ .+++++++ ||+.++.+++| +.+++.+
T Consensus 158 ---------~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~ 226 (350)
T 1g8p_A 158 ---------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVE 226 (350)
T ss_dssp ---------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHH
T ss_pred ---------HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHH
Confidence 44567788877642 10 13789999999755 89999999 99988999998 6788888
Q ss_pred HHHHhhc-------------------------------cCCCCCcccHHHHHHHcCC--C-CHHHHHHHHHHHHHHHHHH
Q 044198 640 IFKSCLR-------------------------------KSPVSKDIDLKAIAKYTHG--F-SGADITEICQRACKCAIRE 685 (772)
Q Consensus 640 Il~~~~~-------------------------------~~~~~~~~~~~~la~~~~g--~-sg~di~~l~~~a~~~a~~~ 685 (772)
|++..++ ...+ ++..++.|++...+ . +.+.+.++++.|...|..+
T Consensus 227 il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-s~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~ 305 (350)
T 1g8p_A 227 VIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEA-PNTALYDCAALCIALGSDGLRGELTLLRSARALAALE 305 (350)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBC-CHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHc
Confidence 8876321 1122 22334555554422 2 6688888888887766543
Q ss_pred HHHHhhhhccCCCCCCcccccccccHHHHHHHHhhC
Q 044198 686 EIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYA 721 (772)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~ 721 (772)
.. ..|+.+|+.+|+..+
T Consensus 306 ~~-------------------~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 306 GA-------------------TAVGRDHLKRVATMA 322 (350)
T ss_dssp TC-------------------SBCCHHHHHHHHHHH
T ss_pred CC-------------------CcCCHHHHHHHHHHH
Confidence 21 259999999988764
No 88
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.66 E-value=7.5e-16 Score=192.24 Aligned_cols=150 Identities=19% Similarity=0.273 Sum_probs=109.2
Q ss_pred CCccccccCcHHHHHHHHHHHHcccCC----------hhHHHH------hCCC----------CCce--EEEECCCCCcH
Q 044198 185 DVGYEDVGGVRKQLGQIREVVELPLRH----------PQIFKA------LGVK----------PPKG--ILLHGPPGTGK 236 (772)
Q Consensus 185 ~~~~~~i~G~~~~~~~i~~~i~~~l~~----------~~~~~~------~~~~----------~~~~--vLL~GppGtGK 236 (772)
.++|++++|+++.++.+.+.+..|+.+ ++.++. .|+. +|+| +||||||||||
T Consensus 1016 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GK 1095 (1706)
T 3cmw_A 1016 GSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGK 1095 (1706)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSH
T ss_pred CceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCCh
Confidence 478999999999999999998887733 445544 2222 3444 99999999999
Q ss_pred HHHHHHHHHHh---CCeEEEEechh----hh--------hhcccc----hHHHHHHHHHHHHHcCCceEEeccccccccC
Q 044198 237 TLLARAIANET---GCYFLCINGPE----IM--------SKMAGE----SESNLREAFNVAEKNAPSIIFIDEIDSIAPK 297 (772)
Q Consensus 237 T~Lar~la~~l---~~~~~~v~~~~----~~--------~~~~g~----~~~~l~~~f~~a~~~~p~il~iDEid~l~~~ 297 (772)
|+||++++.+. +.+.++++..+ +. +++.++ +++.++.+|..++...|+++|+|++++|++.
T Consensus 1096 T~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1096 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCH
T ss_pred HHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCcc
Confidence 99999999865 45556665544 22 556666 8999999999999999999999999999998
Q ss_pred CC---CC---chhhHHHHHHHHHHHhhcccccCceEEEEeeCCC
Q 044198 298 RE---KT---HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP 335 (772)
Q Consensus 298 ~~---~~---~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~ 335 (772)
+. .. ......|+++++++.+++.....+|+|| +||+.
T Consensus 1176 ~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1176 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 42 11 1245678899999999998888889888 66654
No 89
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.66 E-value=1.1e-16 Score=170.78 Aligned_cols=209 Identities=21% Similarity=0.296 Sum_probs=146.8
Q ss_pred ccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhc---
Q 044198 462 ADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM--- 535 (772)
Q Consensus 462 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~--- 535 (772)
+++.|++.+++.+...+...... -....++..++||+||||||||++|+++|..+ +.+++.++++.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~----~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAG----LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHT----CSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcC----CCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 45678888888877666431100 00011234579999999999999999999987 567999988765322
Q ss_pred --ccccchHH-----HHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC---------CCC
Q 044198 536 --WFGESEAN-----VRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS---------AKK 599 (772)
Q Consensus 536 --~vg~se~~-----i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~---------~~~ 599 (772)
++|..... ...+.........+++||||+|.+ ...+.+.|+..|+... ...
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l-------------~~~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA-------------HPDVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS-------------CHHHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc-------------CHHHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 22211100 022333334445589999999988 2567888999887542 114
Q ss_pred cEEEEeecCC--------------------------CCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccC-----
Q 044198 600 TVFVIGATNR--------------------------PDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKS----- 648 (772)
Q Consensus 600 ~v~vi~aTn~--------------------------~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~----- 648 (772)
++++|+|||. ...+++++++ ||+.++.+++|+.+++..|++.++++.
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~ 237 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLA 237 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7889999998 4468888887 999999999999999999999887552
Q ss_pred --CCC---CcccHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHH
Q 044198 649 --PVS---KDIDLKAIAKYTH--GFSGADITEICQRACKCAIREEIEK 689 (772)
Q Consensus 649 --~~~---~~~~~~~la~~~~--g~sg~di~~l~~~a~~~a~~~~~~~ 689 (772)
... ++..++.|++..- ..+.++|+++++.+...++.+.+..
T Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~ 285 (311)
T 4fcw_A 238 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILA 285 (311)
T ss_dssp TTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHH
T ss_pred hCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 111 3344667777654 5788999999999999888877643
No 90
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.66 E-value=4e-16 Score=159.45 Aligned_cols=181 Identities=11% Similarity=0.154 Sum_probs=128.4
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhC---CcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhcc
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQR 571 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~---~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r 571 (772)
...+++|+||||||||++|++++..+. .+++.+++.++...+.. . ++.. ..+.+|||||++.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~--~~~~vliiDe~~~~~~~- 119 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA----L----LEGL--EQFDLICIDDVDAVAGH- 119 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG----G----GTTG--GGSSEEEEETGGGGTTC-
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH----H----HHhc--cCCCEEEEeccccccCC-
Confidence 457899999999999999999998874 77888888876554311 1 1111 34579999999998422
Q ss_pred CCCCCCCCchhHHHHHHHHHhcCCCCCCcE-EEEeecCCCC---CCCccccCCCCcc--ccccCCCCCHHHHHHHHHHhh
Q 044198 572 GSSVGDGGGVDRIVNQLLTEMDGLSAKKTV-FVIGATNRPD---MIDPALLRPGRLD--QLIYIPLPDEHSRLQIFKSCL 645 (772)
Q Consensus 572 ~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v-~vi~aTn~~~---~ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~~ 645 (772)
....+.|+..++.......+ +|+++++.++ .+++++.+ ||. ..+.+++|+.+++.++++.++
T Consensus 120 ----------~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~ 187 (242)
T 3bos_A 120 ----------PLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRA 187 (242)
T ss_dssp ----------HHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHH
Confidence 12234455555443333344 5555555554 45577877 886 899999999999999999998
Q ss_pred ccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHh
Q 044198 646 RKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMK 719 (772)
Q Consensus 646 ~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~ 719 (772)
+..++. ++..++.+++.+.| +.+++.++++.|...|..+. ..|+.++++++++
T Consensus 188 ~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~~--------------------~~It~~~v~~~l~ 241 (242)
T 3bos_A 188 AMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVHQ--------------------RKLTIPFVKEMLR 241 (242)
T ss_dssp HHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHT--------------------CCCCHHHHHHHHT
T ss_pred HHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhC--------------------CCCcHHHHHHHhh
Confidence 765543 34456778887765 88999999998887764331 2599999999875
No 91
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.65 E-value=2.8e-15 Score=163.85 Aligned_cols=201 Identities=24% Similarity=0.317 Sum_probs=140.2
Q ss_pred CCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--eEEEEechhhhhh
Q 044198 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGC--YFLCINGPEIMSK 262 (772)
Q Consensus 185 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~--~~~~v~~~~~~~~ 262 (772)
...|+++.|.++.++.+..+...-. .+..+++++||+||||||||++|+++++.++. +++.+++..+...
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l~~~~~--------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVVLEMIR--------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHHH--------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred CcchhhccChHHHHHHHHHHHHHHH--------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 3458999999999888765554311 13344678999999999999999999999975 7788887664332
Q ss_pred cc-------------------------------------------------cchHHHHHHHHHHHHH-----c----CCc
Q 044198 263 MA-------------------------------------------------GESESNLREAFNVAEK-----N----APS 284 (772)
Q Consensus 263 ~~-------------------------------------------------g~~~~~l~~~f~~a~~-----~----~p~ 284 (772)
+. ++....++..+..+.. . .|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 21 1223344555544332 1 167
Q ss_pred eEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEee-----------CCCCCCChhhhccCCceeEEE
Q 044198 285 IIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGAT-----------NRPNSIDPALRRSGRFDKEID 353 (772)
Q Consensus 285 il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~at-----------n~~~~ld~al~r~gRf~~~i~ 353 (772)
||||||+|.+.+ ...+.|+..++... ..++++++. |++..+++++++ ||.. +.
T Consensus 192 vl~IDEi~~l~~-----------~~~~~L~~~le~~~--~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~ 255 (368)
T 3uk6_A 192 VLFIDEVHMLDI-----------ESFSFLNRALESDM--APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VS 255 (368)
T ss_dssp EEEEESGGGSBH-----------HHHHHHHHHTTCTT--CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EE
T ss_pred eEEEhhccccCh-----------HHHHHHHHHhhCcC--CCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EE
Confidence 999999998842 34566777776532 245555443 346789999998 9977 89
Q ss_pred eCCCCHHHHHHHHHHHhccC--CcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhh
Q 044198 354 IGVPDEVGRLEVLRIHTKNM--KLAEDVNLETVARETHGFVGADLAALCTEGAMQCIRE 410 (772)
Q Consensus 354 i~~p~~~~r~~Il~~~~~~~--~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 410 (772)
+++|+.+++.+|++..+... .+.+ ..++.++..+.+...+++..++..+...+...
T Consensus 256 ~~~~~~~e~~~il~~~~~~~~~~~~~-~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~ 313 (368)
T 3uk6_A 256 TTPYSEKDTKQILRIRCEEEDVEMSE-DAYTVLTRIGLETSLRYAIQLITAASLVCRKR 313 (368)
T ss_dssp ECCCCHHHHHHHHHHHHHHTTCCBCH-HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999776543 3333 34778888888677888889998887766443
No 92
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.65 E-value=2e-16 Score=178.28 Aligned_cols=185 Identities=23% Similarity=0.323 Sum_probs=131.9
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh----------CCcEEEE
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISI 527 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~----------~~~~i~v 527 (772)
.-.++++.|.+...+.+.+.+.. ....++||+||||||||++|+++|..+ +.+++.+
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred cCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 34678899999888877766543 235679999999999999999999996 7788888
Q ss_pred ecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeec
Q 044198 528 KGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGAT 607 (772)
Q Consensus 528 ~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 607 (772)
+++ ++|.|+.+..++.+|..+....++||||| +. ....+.|+..|+ .+.+.+|+||
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD---------~~--------~~a~~~L~~~L~----~g~v~vI~at 298 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID---------AA--------IDASNILKPSLA----RGELQCIGAT 298 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC---------C----------------CCCTT----SSSCEEEEEC
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe---------Cc--------hhHHHHHHHhhc----CCCEEEEecC
Confidence 887 77889999999999999998889999999 11 123344444443 4578999999
Q ss_pred CCCC-----CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccC----CCC-CcccHHHHHHHcCCC-----CHHHHH
Q 044198 608 NRPD-----MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKS----PVS-KDIDLKAIAKYTHGF-----SGADIT 672 (772)
Q Consensus 608 n~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~----~~~-~~~~~~~la~~~~g~-----sg~di~ 672 (772)
|.++ .+|+++.| ||+ .|.|+.|+.+++.+|++.++.++ .+. .+..+..+++.+.+| .+....
T Consensus 299 ~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai 375 (468)
T 3pxg_A 299 TLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAI 375 (468)
T ss_dssp CTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHH
T ss_pred CHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHH
Confidence 9987 69999999 998 59999999999999999888663 222 334466666665444 345677
Q ss_pred HHHHHHHHHH
Q 044198 673 EICQRACKCA 682 (772)
Q Consensus 673 ~l~~~a~~~a 682 (772)
.++.+|+..+
T Consensus 376 ~ll~~a~~~~ 385 (468)
T 3pxg_A 376 DLIDEAGSKV 385 (468)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776544
No 93
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.65 E-value=5.3e-15 Score=159.80 Aligned_cols=194 Identities=21% Similarity=0.274 Sum_probs=141.1
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
++.+.+|+++.|.++.++.+..++...... -.+..++||+||||||||++|+++++.++.+++.+++..+.
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~- 92 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE- 92 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-
Confidence 345568999999999999999888753211 13456899999999999999999999999999999987652
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccc----------------cCc
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKS----------------RAH 325 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~----------------~~~ 325 (772)
....+...+.. ...+++|||||++.+.+ .....|+..++...- ..+
T Consensus 93 -----~~~~~~~~~~~--~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 93 -----KSGDLAAILTN--LSEGDILFIDEIHRLSP-----------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp -----SHHHHHHHHHT--CCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred -----chhHHHHHHHh--ccCCCEEEEechhhcCH-----------HHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 22333334432 24578999999998852 334556666654321 114
Q ss_pred eEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCchhhHHHHHHHHH
Q 044198 326 VMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVGADLAALCTEGA 404 (772)
Q Consensus 326 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~ 404 (772)
+.+|++||+...+++++++ ||+..+.++.|+.+++.++++.+....... .+..++.++..+.|.. +.+..++..+.
T Consensus 155 ~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~-r~l~~~l~~~~ 231 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTP-RIALRLLKRVR 231 (338)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCH-HHHHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCH-HHHHHHHHHHH
Confidence 8999999999999999998 999999999999999999999877654432 2234666777555543 45566666554
Q ss_pred H
Q 044198 405 M 405 (772)
Q Consensus 405 ~ 405 (772)
.
T Consensus 232 ~ 232 (338)
T 3pfi_A 232 D 232 (338)
T ss_dssp H
T ss_pred H
Confidence 3
No 94
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.65 E-value=4.3e-15 Score=160.16 Aligned_cols=231 Identities=20% Similarity=0.299 Sum_probs=160.8
Q ss_pred ccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhccccc
Q 044198 460 RWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 539 (772)
Q Consensus 460 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~ 539 (772)
.+++..|.+.+++.+...+.... . .-.++.+++|+||||||||||++++|+.++.++...+++.+..
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~-------~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~----- 89 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAK-------M-RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK----- 89 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHH-------H-HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-----
T ss_pred cHHHccCcHHHHHHHHHHHHHHH-------h-cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-----
Confidence 56777788877777665543210 0 0134567999999999999999999999999888777765421
Q ss_pred chHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC----------------CCCcEEE
Q 044198 540 SEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS----------------AKKTVFV 603 (772)
Q Consensus 540 se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~----------------~~~~v~v 603 (772)
...+..++... ...+|+|+||++.+.+ .+.+.|+..|+... ....+.+
T Consensus 90 -~~~l~~~~~~~--~~~~v~~iDE~~~l~~-------------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 90 -QGDMAAILTSL--ERGDVLFIDEIHRLNK-------------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp -HHHHHHHHHHC--CTTCEEEEETGGGCCH-------------HHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred -HHHHHHHHHHc--cCCCEEEEcchhhcCH-------------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 23344444322 2457999999998843 22334444443221 0124677
Q ss_pred EeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 044198 604 IGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRACKCA 682 (772)
Q Consensus 604 i~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~~~a 682 (772)
+++|+++..|++++.+ ||...+.+++|+.+++.+|++...+...+. ++..+..+|+.+.| +.+++.++++.+...|
T Consensus 154 i~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 154 VGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDML 230 (334)
T ss_dssp EEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHH
T ss_pred EEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHH
Confidence 8899999999999998 999889999999999999999888766554 33446778887776 6688888998887766
Q ss_pred HHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCC---CCCHHHHHHHHHHHHHHh
Q 044198 683 IREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARR---SVSDSDVRKYQAFANTLQ 741 (772)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~---s~~~~~~~~y~~~~~~~~ 741 (772)
..+.. ..|+.+++.+++..+.. ..+..+....+.+.+.|+
T Consensus 231 ~~~~~-------------------~~It~~~v~~al~~~~~~~~~l~~~~~~~l~~~~~~~~ 273 (334)
T 1in4_A 231 TVVKA-------------------DRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIYR 273 (334)
T ss_dssp HHHTC-------------------SSBCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHST
T ss_pred HHcCC-------------------CCcCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHhC
Confidence 54321 25888888888877642 344555566666776663
No 95
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.64 E-value=3.2e-16 Score=168.96 Aligned_cols=207 Identities=17% Similarity=0.168 Sum_probs=139.2
Q ss_pred cccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecc------cchh
Q 044198 461 WADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGP------ELLT 534 (772)
Q Consensus 461 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~------~l~~ 534 (772)
++++.|.+.+++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++. ++.+
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred ccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 35678888888777655432 35799999999999999999999999999988763 2222
Q ss_pred cccccchHHHHHHHHHHHhCC---CeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCC---------CCCCcEE
Q 044198 535 MWFGESEANVRDVFDKARQSA---PCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGL---------SAKKTVF 602 (772)
Q Consensus 535 ~~vg~se~~i~~vf~~a~~~~---p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~---------~~~~~v~ 602 (772)
...-.... ..|. .... .+|+||||++.+. ....+.|+..|+.. ....+++
T Consensus 91 ~~~~~~~~---~~~~--~~~g~l~~~vl~iDEi~~~~-------------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~ 152 (331)
T 2r44_A 91 TMIYNQHK---GNFE--VKKGPVFSNFILADEVNRSP-------------AKVQSALLECMQEKQVTIGDTTYPLDNPFL 152 (331)
T ss_dssp EEEEETTT---TEEE--EEECTTCSSEEEEETGGGSC-------------HHHHHHHHHHHHHSEEEETTEEEECCSSCE
T ss_pred ceeecCCC---CceE--eccCcccccEEEEEccccCC-------------HHHHHHHHHHHhcCceeeCCEEEECCCCEE
Confidence 21100000 0000 0011 2699999999872 45677788887743 1234678
Q ss_pred EEeecCCCC-----CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-----------------------Ccc
Q 044198 603 VIGATNRPD-----MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-----------------------KDI 654 (772)
Q Consensus 603 vi~aTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-----------------------~~~ 654 (772)
+|+|+|..+ .+++++++ ||+..+.+++|+.+++.+|++..+...+.. ++.
T Consensus 153 viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~ 230 (331)
T 2r44_A 153 VLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISES 230 (331)
T ss_dssp EEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHH
T ss_pred EEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHH
Confidence 888888544 38999998 999889999999999999999987653211 111
Q ss_pred cHHHHHHHc-------------------CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHH
Q 044198 655 DLKAIAKYT-------------------HGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFE 715 (772)
Q Consensus 655 ~~~~la~~~-------------------~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 715 (772)
-++.+++.. .|.|.+.+..+++.|...|..+.. ..|+.+|+.
T Consensus 231 ~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~-------------------~~v~~~dv~ 291 (331)
T 2r44_A 231 LEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNR-------------------DYVLPEDIK 291 (331)
T ss_dssp HHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTC-------------------SBCCHHHHH
T ss_pred HHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCC-------------------CCCCHHHHH
Confidence 133333221 145778888877777666543221 258999999
Q ss_pred HHHhhC
Q 044198 716 ESMKYA 721 (772)
Q Consensus 716 ~al~~~ 721 (772)
+++..+
T Consensus 292 ~~~~~v 297 (331)
T 2r44_A 292 EVAYDI 297 (331)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 96
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=3.9e-16 Score=178.28 Aligned_cols=204 Identities=17% Similarity=0.196 Sum_probs=134.4
Q ss_pred cCCcccccccchHHHHHHHhhhccccC-CchHHHhhcCC---CCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEeccc
Q 044198 456 VPNVRWADIGGLDTVKRELQETVQYPV-EHPEMFEKFGM---SPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 531 (772)
Q Consensus 456 ~~~v~~~~i~g~~~~k~~l~~~i~~~~-~~~~~~~~~~~---~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~ 531 (772)
....+|++++|.+.+++.+.+.+.... ..+..+...+. .+++++||+||||||||++|+++|++++.+++.+++++
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~ 112 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD 112 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 344578999999999999988775321 11122333333 25678999999999999999999999999999999988
Q ss_pred chhcccccch-------HHHHHHHHHH-----HhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCC
Q 044198 532 LLTMWFGESE-------ANVRDVFDKA-----RQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKK 599 (772)
Q Consensus 532 l~~~~vg~se-------~~i~~vf~~a-----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~ 599 (772)
+.+.++.... ..+..+|..+ ....++||||||+|.+.... ...++.|+..++.. ..
T Consensus 113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~----------~~~l~~L~~~l~~~--~~ 180 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD----------RGGVGQLAQFCRKT--ST 180 (516)
T ss_dssp CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS----------TTHHHHHHHHHHHC--SS
T ss_pred cchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh----------HHHHHHHHHHHHhc--CC
Confidence 7554322111 1133444444 23567899999999995431 22356666666642 33
Q ss_pred cEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHH
Q 044198 600 TVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRA 678 (772)
Q Consensus 600 ~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a 678 (772)
.+++++++.....+. .+. |+...+.|++|+.+++.++++..+.+.++. ++..+..|++.+.| |++.+++..
T Consensus 181 ~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G----diR~~i~~L 252 (516)
T 1sxj_A 181 PLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG----DIRQVINLL 252 (516)
T ss_dssp CEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT----CHHHHHHHH
T ss_pred CEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cHHHHHHHH
Confidence 455555554444454 344 444589999999999999998877543332 33447888887654 566555544
Q ss_pred H
Q 044198 679 C 679 (772)
Q Consensus 679 ~ 679 (772)
.
T Consensus 253 ~ 253 (516)
T 1sxj_A 253 S 253 (516)
T ss_dssp T
T ss_pred H
Confidence 3
No 97
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.7e-16 Score=164.46 Aligned_cols=180 Identities=14% Similarity=0.122 Sum_probs=130.3
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHh----------CCcEEEEecccchhc----------c------cccchHHHHHH
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISIKGPELLTM----------W------FGESEANVRDV 547 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~----------~~~~i~v~~~~l~~~----------~------vg~se~~i~~v 547 (772)
..+.+++|+||||||||+++++++.++ .+.++.+++..+.+. + .|.+...++.+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 457789999999999999999999988 356889998765432 2 23456678888
Q ss_pred HHHH--HhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCC----CccccCCC
Q 044198 548 FDKA--RQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMI----DPALLRPG 621 (772)
Q Consensus 548 f~~a--~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l----d~allrpg 621 (772)
|+.. ....++|+||||+|.+. .++++..|+.... ....+++||+++|..+.. ++++.+
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~------------~q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S-- 186 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLL------------SEKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL-- 186 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSC------------CTHHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH--
T ss_pred HHHhhhccCCceEEEEecHHHhh------------cchHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc--
Confidence 8875 35567899999999995 1456777777654 245679999999998754 455665
Q ss_pred Ccc-ccccCCCCCHHHHHHHHHHhhccCCC------------------------------------CCcccHHHHHHHcC
Q 044198 622 RLD-QLIYIPLPDEHSRLQIFKSCLRKSPV------------------------------------SKDIDLKAIAKYTH 664 (772)
Q Consensus 622 Rf~-~~i~~~~p~~~~r~~Il~~~~~~~~~------------------------------------~~~~~~~~la~~~~ 664 (772)
||. ..|.|++++.++..+|++..++...- -++.-++.+|+...
T Consensus 187 R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA 266 (318)
T 3te6_A 187 KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVA 266 (318)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHH
T ss_pred cCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHH
Confidence 887 68999999999999999988865321 02223556666422
Q ss_pred C--CCHHHHHHHHHHHHHHHHHHHHHH
Q 044198 665 G--FSGADITEICQRACKCAIREEIEK 689 (772)
Q Consensus 665 g--~sg~di~~l~~~a~~~a~~~~~~~ 689 (772)
. -..+---++|+.|+..|-++.+.+
T Consensus 267 ~~~GD~R~Al~ilr~A~~~ae~e~~~k 293 (318)
T 3te6_A 267 NVSGSTEKAFKICEAAVEISKKDFVRK 293 (318)
T ss_dssp HHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 133444459999999998887754
No 98
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.63 E-value=2.8e-15 Score=152.86 Aligned_cols=202 Identities=20% Similarity=0.296 Sum_probs=146.3
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc--------------
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN-------------- 523 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~-------------- 523 (772)
...|+++.|.+...+.+...+.. + ..+..++|+||||+|||+++++++..+...
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred CccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 34577889999888888776543 1 223469999999999999999999887532
Q ss_pred ----------EEEEecccchhcccccchHHHHHHHHHHH----hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHH
Q 044198 524 ----------FISIKGPELLTMWFGESEANVRDVFDKAR----QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLL 589 (772)
Q Consensus 524 ----------~i~v~~~~l~~~~vg~se~~i~~vf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL 589 (772)
++.+.... ......++.+++... ...+.+|||||+|.+. ....+.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~-------------~~~~~~l~ 147 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-------------RHSFNALL 147 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-------------HHHHHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc-------------HHHHHHHH
Confidence 12222111 012234556665543 2347899999999872 44677788
Q ss_pred HHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCH
Q 044198 590 TEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSG 668 (772)
Q Consensus 590 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg 668 (772)
..++.. ..++.+|++||.++.+++++.+ |+ ..+.+++|+.++..++++..+.+.... ++..++.+++.+.| +.
T Consensus 148 ~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~ 221 (250)
T 1njg_A 148 KTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SL 221 (250)
T ss_dssp HHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CH
T ss_pred HHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CH
Confidence 888754 4578899999999999999987 76 589999999999999999988765443 34457788898877 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHh
Q 044198 669 ADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMK 719 (772)
Q Consensus 669 ~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~ 719 (772)
+++.++|+.|...+ ...|+.+|+++++.
T Consensus 222 ~~~~~~~~~~~~~~-----------------------~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 222 RDALSLTDQAIASG-----------------------DGQVSTQAVSAMLG 249 (250)
T ss_dssp HHHHHHHHHHHTTT-----------------------TSSBCHHHHHHHSC
T ss_pred HHHHHHHHHHHhcc-----------------------CceecHHHHHHHhC
Confidence 89999988773221 01599999998764
No 99
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.63 E-value=1.1e-14 Score=159.06 Aligned_cols=219 Identities=21% Similarity=0.314 Sum_probs=147.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhHHH-HhCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh-cccc
Q 044198 190 DVGGVRKQLGQIREVVELPLRHPQIFK-ALGV-KPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSK-MAGE 266 (772)
Q Consensus 190 ~i~G~~~~~~~i~~~i~~~l~~~~~~~-~~~~-~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~-~~g~ 266 (772)
.|.|+++.++.+...+........... .... .++.++||+||||||||++|+++|+.++.+++.+++.++... +.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 378999999999888853221110000 0011 256789999999999999999999999999999999987743 5665
Q ss_pred h-HHHHHHHHHHH----HHcCCceEEeccccccccCCCCCc---hhhHHHHHHHHHHHhhccc-----------------
Q 044198 267 S-ESNLREAFNVA----EKNAPSIIFIDEIDSIAPKREKTH---GEVEKRIVSQLLTLMDGMK----------------- 321 (772)
Q Consensus 267 ~-~~~l~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~L~~lld~~~----------------- 321 (772)
. ...+..+|..+ ....+++|||||+|.+.+.+.... .....++.+.|+.+|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 4 55667777664 344578999999999987754332 2223458899999998431
Q ss_pred --ccCceEEEEeeCCC----------CC-----------------------------------CChhhhccCCceeEEEe
Q 044198 322 --SRAHVMVIGATNRP----------NS-----------------------------------IDPALRRSGRFDKEIDI 354 (772)
Q Consensus 322 --~~~~v~vI~atn~~----------~~-----------------------------------ld~al~r~gRf~~~i~i 354 (772)
...++++|++++.. .. +.|+|.. ||+..+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 12345566665542 11 6788876 99999999
Q ss_pred CCCCHHHHHHHHHH----Hhc---------cCCcc-cccchhHHHHH--hcCCchhhHHHHHHHHHHHhhhh
Q 044198 355 GVPDEVGRLEVLRI----HTK---------NMKLA-EDVNLETVARE--THGFVGADLAALCTEGAMQCIRE 410 (772)
Q Consensus 355 ~~p~~~~r~~Il~~----~~~---------~~~l~-~~~~l~~la~~--t~g~~~~dl~~l~~~a~~~~~~~ 410 (772)
.+|+.+++.+|+.. ..+ ...+. .+..++.++.. ...+..+++..++.++....+.+
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 99999999999875 111 11111 12235556643 34455678888888877665543
No 100
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.62 E-value=1.7e-16 Score=155.96 Aligned_cols=158 Identities=21% Similarity=0.349 Sum_probs=116.8
Q ss_pred cccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh----------CCcEEEEe
Q 044198 459 VRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISIK 528 (772)
Q Consensus 459 v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~----------~~~~i~v~ 528 (772)
..|+++.|.++..+.+.+.+.. ..+.+++|+||||||||++|++++..+ +.+++.++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred ccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 3577888888877777665432 335679999999999999999999986 67888998
Q ss_pred cccch--hcccccchHHHHHHHHHHHh-CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEe
Q 044198 529 GPELL--TMWFGESEANVRDVFDKARQ-SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIG 605 (772)
Q Consensus 529 ~~~l~--~~~vg~se~~i~~vf~~a~~-~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 605 (772)
+.++. ..+.|.....+..+++.+.. ..+++|||||+|.+...+... . ...+.+.+...++ ..++.+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~---~~~~~~~l~~~~~----~~~~~~i~ 156 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD--G---AMDAGNMLKPALA----RGELHCVG 156 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-----------CCCCHHHHHHHHH----TTSCCEEE
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc--c---hHHHHHHHHHhhc----cCCeEEEE
Confidence 88776 34566667788888886644 457899999999997654321 1 1222333444443 24677889
Q ss_pred ecCCCC-----CCCccccCCCCccccccCCCCCHHHHHHHH
Q 044198 606 ATNRPD-----MIDPALLRPGRLDQLIYIPLPDEHSRLQIF 641 (772)
Q Consensus 606 aTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il 641 (772)
+||.++ .+++++.+ ||+ .+++++|+.++|.+|+
T Consensus 157 ~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 157 ATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred eCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 998876 78999998 998 6999999999998876
No 101
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.62 E-value=3.6e-15 Score=163.84 Aligned_cols=211 Identities=23% Similarity=0.267 Sum_probs=145.3
Q ss_pred ccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh-----------CCcEEEEecc
Q 044198 462 ADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC-----------QANFISIKGP 530 (772)
Q Consensus 462 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~-----------~~~~i~v~~~ 530 (772)
+++.|.+...+.+...+..... -..+.+++|+||||||||++|++++..+ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 6788888888877766543211 1345689999999999999999999987 8899999876
Q ss_pred cch-h----------c-------ccccch-HHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHH-HHHHHH
Q 044198 531 ELL-T----------M-------WFGESE-ANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRI-VNQLLT 590 (772)
Q Consensus 531 ~l~-~----------~-------~vg~se-~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~-~~~lL~ 590 (772)
+.. + . ..|.+. ..+..++..+....+ +|||||+|.+..... ..+ +..|+.
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~---------~~~~l~~l~~ 160 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG---------GDIVLYQLLR 160 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT---------SHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC---------CceeHHHHhc
Confidence 532 1 1 112222 234555555544444 999999999965421 223 444443
Q ss_pred HhcCCCCCCcEEEEeecCCC---CCCCccccCCCCccccccCCCCCHHHHHHHHHHhhcc----CCCCCcccHHHHHHHc
Q 044198 591 EMDGLSAKKTVFVIGATNRP---DMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRK----SPVSKDIDLKAIAKYT 663 (772)
Q Consensus 591 ~ld~~~~~~~v~vi~aTn~~---~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~----~~~~~~~~~~~la~~~ 663 (772)
.. .++.+|++||.+ +.+++++.+ ||...+.|++|+.++..+|++..+++ ..+ .+..++.+++.+
T Consensus 161 ~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~i~~~~ 231 (384)
T 2qby_B 161 SD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY-DDEILSYIAAIS 231 (384)
T ss_dssp SS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC-CSHHHHHHHHHH
T ss_pred CC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc-CHHHHHHHHHHH
Confidence 33 678999999987 678899887 98889999999999999999998763 222 344567788877
Q ss_pred CCC--CHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhC
Q 044198 664 HGF--SGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYA 721 (772)
Q Consensus 664 ~g~--sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~ 721 (772)
.+. +.+.+.++|+.|...|. . ...|+.+|+.+++.+.
T Consensus 232 ~~~~G~~r~a~~~l~~a~~~a~----~-----------------~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 232 AKEHGDARKAVNLLFRAAQLAS----G-----------------GGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HTTCCCHHHHHHHHHHHHHHTT----S-----------------SSCCCHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhc----C-----------------CCccCHHHHHHHHHHH
Confidence 622 45667778888766553 0 0247777777766654
No 102
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.61 E-value=1.3e-15 Score=191.65 Aligned_cols=387 Identities=16% Similarity=0.242 Sum_probs=198.7
Q ss_pred cCChhHHHHhC---CCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh----hcccc--------hHHH
Q 044198 209 LRHPQIFKALG---VKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMS----KMAGE--------SESN 270 (772)
Q Consensus 209 l~~~~~~~~~~---~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~----~~~g~--------~~~~ 270 (772)
...+++-.-++ +.++.-++|+||||+|||+|+..+|... +..+++++...-.. ...|. ....
T Consensus 366 TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~I~~~~~ 445 (2050)
T 3cmu_A 366 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 445 (2050)
T ss_dssp CSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSS
T ss_pred CCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHcCCCHHHeEEeCCCC
Confidence 34455666665 7888889999999999999999998765 35677777643211 11110 0011
Q ss_pred HHHHHHHH----HHcCCceEEeccccccccCCCC--Cch----hhHHH-HHHHHHHHhhcccccCceEEEEeeC---CCC
Q 044198 271 LREAFNVA----EKNAPSIIFIDEIDSIAPKREK--THG----EVEKR-IVSQLLTLMDGMKSRAHVMVIGATN---RPN 336 (772)
Q Consensus 271 l~~~f~~a----~~~~p~il~iDEid~l~~~~~~--~~~----~~~~~-v~~~L~~lld~~~~~~~v~vI~atn---~~~ 336 (772)
+.++++.+ +...+.+++||.+..+.++... ..+ ....+ +...|..+....+ ..++.+|.+.. .++
T Consensus 446 ~e~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lak-e~~i~VIlinQl~~~vg 524 (2050)
T 3cmu_A 446 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK-QSNTLLIFINQIRMKIG 524 (2050)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH-TTTCEEEEEECCEECTT
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHH-HcCCeEEEEeecccccc
Confidence 22333333 3567999999999999852210 001 11223 3333444433222 34445554432 222
Q ss_pred CC--ChhhhccC------CceeEEEe--------------------------CCCCHHHHHHHHHHHhccCC-------c
Q 044198 337 SI--DPALRRSG------RFDKEIDI--------------------------GVPDEVGRLEVLRIHTKNMK-------L 375 (772)
Q Consensus 337 ~l--d~al~r~g------Rf~~~i~i--------------------------~~p~~~~r~~Il~~~~~~~~-------l 375 (772)
.. +|. +-.| --+..+.+ .+|......+|+ +..++. +
T Consensus 525 ~~~g~p~-~psGg~ale~~ADv~l~L~R~~~~~~g~~~~g~~~~v~V~KnR~gp~g~~~~f~I~--~~~Gi~~~~~~ldl 601 (2050)
T 3cmu_A 525 VMFGNPE-TTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQIL--YGEGINFYGELVDL 601 (2050)
T ss_dssp CCSSCCE-ECSSHHHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSCCEEEEEEE--TTTEECHHHHHHHH
T ss_pred cccCCCc-CCCCcchhhhhCCEEEEEEecccccCCccccCcEEEEEEEecCCCCCCceEEEEEE--eCCCccccccchhh
Confidence 21 110 0000 00111111 111111000000 000000 0
Q ss_pred ccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccccchhhHhhhhhhhccchhhhhhhhhcCcccchhhhcc
Q 044198 376 AEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEEDTIDAEVLSSMYVTNENLNAAVAITSPSALREIAVE 455 (772)
Q Consensus 376 ~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~ 455 (772)
..+.++...+..+++|.+.++.+ +++++...++...+.. +.+.......+.++ .++....|+.+++...+
T Consensus 602 a~~~~ii~k~g~w~~~~~~~l~q-g~e~~~~~l~~~p~~~----~ei~~~i~~~~~Vt-----~a~~~~~ps~L~e~~~~ 671 (2050)
T 3cmu_A 602 GVKEKLIEKAGAWYSYKGEKIGQ-GKANATAWLKDNPETA----KEIEKKVRELLLSN-----PNSTTGSTGSMGHTTGA 671 (2050)
T ss_dssp HHHTTSSEEETTEEEETTEEEEE-SHHHHHHHHTTCHHHH----HHHHHHHHHHHCSS-----CCC--------------
T ss_pred hhhcChhhhcCceecccCCchHh-hHHHHHHHHHhChHHH----HHHHHHHHHhcccc-----hhcccCCHHHHHhhhcc
Confidence 00000111112245566666655 6666666666543221 12333333333333 45667789999999999
Q ss_pred cCCcccccccchHHHHHHHhh-----------------hccccCCchHHHhhc---CCCCCCceEEeCCCCCchhHHHHH
Q 044198 456 VPNVRWADIGGLDTVKRELQE-----------------TVQYPVEHPEMFEKF---GMSPSRGVLFYGPPGCGKTLLAKA 515 (772)
Q Consensus 456 ~~~v~~~~i~g~~~~k~~l~~-----------------~i~~~~~~~~~~~~~---~~~~~~~iLl~GppGtGKT~la~a 515 (772)
.|+++|++...+..+.+.+.. ...++...+++.+-+ |+.+...++|+|+||+|||+||..
T Consensus 672 ~~~v~~~~~~~i~~a~~~i~~~f~~~~~~~l~~~~~~~~~~i~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalq 751 (2050)
T 3cmu_A 672 MSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ 751 (2050)
T ss_dssp --CCSTTHHHHHHHHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHhhccccccchhhhhhcccceeecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHH
Confidence 999999864444444444422 122333445555555 488888899999999999999999
Q ss_pred HHHHh---CCcEEEEecccchhcc----cc--------cchHHHHHHHHHHHh----CCCeEEEEcCchhhhh-cc--CC
Q 044198 516 IANEC---QANFISIKGPELLTMW----FG--------ESEANVRDVFDKARQ----SAPCVLFFDELDSIAI-QR--GS 573 (772)
Q Consensus 516 lA~~~---~~~~i~v~~~~l~~~~----vg--------~se~~i~~vf~~a~~----~~p~ilfiDEid~l~~-~r--~~ 573 (772)
+|..+ +.+++++++.+....+ .| .++..+.+++..+++ ..|+++|||.++.+.. .. +.
T Consensus 752 lA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~ 831 (2050)
T 3cmu_A 752 VIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGE 831 (2050)
T ss_dssp HHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSC
T ss_pred HHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCC
Confidence 99876 3468899887765543 33 233456677776655 6789999999999975 22 11
Q ss_pred CCCCC-CchhHHHHHHHHHhcCCCCCCcEEEEeecCC
Q 044198 574 SVGDG-GGVDRIVNQLLTEMDGLSAKKTVFVIGATNR 609 (772)
Q Consensus 574 ~~~~~-~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~ 609 (772)
..... +...|.+++++..|..+....++.||++..-
T Consensus 832 ~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv 868 (2050)
T 3cmu_A 832 IGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (2050)
T ss_dssp TTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 00011 2246678999999998877777777777643
No 103
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.61 E-value=2.7e-15 Score=147.24 Aligned_cols=159 Identities=24% Similarity=0.385 Sum_probs=117.4
Q ss_pred CCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 044198 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET----------GCYFLCI 254 (772)
Q Consensus 185 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l----------~~~~~~v 254 (772)
+..++++.|.+++++.+.+.+.. ..+.+++|+||||||||++++++++.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 44678899999999988877643 235689999999999999999999986 6788899
Q ss_pred echhhh--hhcccchHHHHHHHHHHHHH-cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEe
Q 044198 255 NGPEIM--SKMAGESESNLREAFNVAEK-NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGA 331 (772)
Q Consensus 255 ~~~~~~--~~~~g~~~~~l~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~a 331 (772)
++..+. ..+.+.....+..+++.+.. ..+.+++|||+|.+.+.+..... ..+.+.|..+++ ..++.+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~---~~~~~~l~~~~~----~~~~~~i~~ 157 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA---MDAGNMLKPALA----RGELHCVGA 157 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C---CCCHHHHHHHHH----TTSCCEEEE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccch---HHHHHHHHHhhc----cCCeEEEEe
Confidence 988776 34455666777888876654 45779999999999765422111 112233444443 356778888
Q ss_pred eCCCC-----CCChhhhccCCceeEEEeCCCCHHHHHHHH
Q 044198 332 TNRPN-----SIDPALRRSGRFDKEIDIGVPDEVGRLEVL 366 (772)
Q Consensus 332 tn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~Il 366 (772)
||.+. .+++++++ ||. .+.++.|+.+++.+||
T Consensus 158 ~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 88775 78999998 998 5999999999998875
No 104
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.61 E-value=2.3e-15 Score=161.67 Aligned_cols=185 Identities=17% Similarity=0.188 Sum_probs=132.8
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcc
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 536 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~ 536 (772)
...+|+++.|.+.+++.+...+.. -..+..+|++||||||||++|+++|+.++.+++.+++++.
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~---- 84 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC---- 84 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC----
T ss_pred CCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc----
Confidence 345688999999999888877652 1234567888999999999999999999999999998763
Q ss_pred cccchHHHHHHHHHHHhC-----CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCC
Q 044198 537 FGESEANVRDVFDKARQS-----APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPD 611 (772)
Q Consensus 537 vg~se~~i~~vf~~a~~~-----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 611 (772)
+ ...++..+...... .+.++||||+|.+.+ ....+.|+..|+.. ..++.+|++||.++
T Consensus 85 -~--~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~------------~~~~~~L~~~le~~--~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 85 -K--IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL------------AESQRHLRSFMEAY--SSNCSIIITANNID 147 (324)
T ss_dssp -C--HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG------------HHHHHHHHHHHHHH--GGGCEEEEEESSGG
T ss_pred -C--HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc------------HHHHHHHHHHHHhC--CCCcEEEEEeCCcc
Confidence 1 34555555443332 468999999999841 33566777777753 24678899999999
Q ss_pred CCCccccCCCCccccccCCCCCHHHHHHHHHHhh-------ccCCCC-Cc-ccHHHHHHHcCCCCHHHHHHHHHHH
Q 044198 612 MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCL-------RKSPVS-KD-IDLKAIAKYTHGFSGADITEICQRA 678 (772)
Q Consensus 612 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~-------~~~~~~-~~-~~~~~la~~~~g~sg~di~~l~~~a 678 (772)
.+++++.+ ||. ++.|++|+.++|.+|++..+ .+..+. ++ ..++.+++.+.| +.+++.+.++.+
T Consensus 148 ~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~~~ 219 (324)
T 3u61_B 148 GIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELDSY 219 (324)
T ss_dssp GSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHHHH
T ss_pred ccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 99999998 996 79999999999877765543 222232 23 456777777654 333344444433
No 105
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.60 E-value=2.4e-15 Score=181.91 Aligned_cols=201 Identities=23% Similarity=0.317 Sum_probs=134.0
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh----------CCcEEEE
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISI 527 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~----------~~~~i~v 527 (772)
...++++.|.+...+.+.+.+.. ....+++|+||||||||++|+++|..+ +.+++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 34678888988777766655422 335679999999999999999999987 7889999
Q ss_pred ecccch--hcccccchHHHHHHHHHHHhC-CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEE
Q 044198 528 KGPELL--TMWFGESEANVRDVFDKARQS-APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVI 604 (772)
Q Consensus 528 ~~~~l~--~~~vg~se~~i~~vf~~a~~~-~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi 604 (772)
+++.+. .+|.|+.+..++.+|+.+... .|+||||||+|.+.+.+... +...+.+.|...++. ..+.+|
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~-----g~~~~~~~L~~~l~~----~~i~~I 303 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE-----GAVDAGNMLKPALAR----GELRLI 303 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------HHHHHT----TCCCEE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc-----chHHHHHHHHHHHhC----CCeEEE
Confidence 999887 578899999999999999875 68999999999998664321 123445556666643 467799
Q ss_pred eecCCCC----CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccC----CCC-CcccHHHHHHHc-----CCCCHHH
Q 044198 605 GATNRPD----MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKS----PVS-KDIDLKAIAKYT-----HGFSGAD 670 (772)
Q Consensus 605 ~aTn~~~----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~----~~~-~~~~~~~la~~~-----~g~sg~d 670 (772)
++||.++ .+|+++.| ||+. +.+++|+.+++.+|++.++.++ .+. .+..+..+++.+ +.|.+..
T Consensus 304 ~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~k 380 (854)
T 1qvr_A 304 GATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDK 380 (854)
T ss_dssp EEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHH
T ss_pred EecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHH
Confidence 9999875 58999999 9994 9999999999999998776543 221 233455555543 4566777
Q ss_pred HHHHHHHHHHHHH
Q 044198 671 ITEICQRACKCAI 683 (772)
Q Consensus 671 i~~l~~~a~~~a~ 683 (772)
...++.+|+..+.
T Consensus 381 ai~lldea~a~~~ 393 (854)
T 1qvr_A 381 AIDLIDEAAARLR 393 (854)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777765543
No 106
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.60 E-value=2.7e-15 Score=179.43 Aligned_cols=185 Identities=23% Similarity=0.314 Sum_probs=132.5
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh----------CCcEEEE
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISI 527 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~----------~~~~i~v 527 (772)
.-.++++.|.+...+.+.+.+.. ....++||+||||||||++|+++|..+ +.+++.+
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 34678899999988888766543 345679999999999999999999997 7788887
Q ss_pred ecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeec
Q 044198 528 KGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGAT 607 (772)
Q Consensus 528 ~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 607 (772)
++ ..+|.|+.+..++.+|..+....|+||||| + .....+.|+..|+ ...+.+|+||
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD---------~--------~~~~~~~L~~~l~----~~~v~~I~at 298 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID---------A--------AIDASNILKPSLA----RGELQCIGAT 298 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC---------C----------------CCCTT----SSSCEEEEEC
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc---------C--------chhHHHHHHHHHh----cCCEEEEeCC
Confidence 77 566899999999999999999899999999 1 1123344444444 5678999999
Q ss_pred CCCC-----CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCC----C-CcccHHHHHHHc-----CCCCHHHHH
Q 044198 608 NRPD-----MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPV----S-KDIDLKAIAKYT-----HGFSGADIT 672 (772)
Q Consensus 608 n~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~----~-~~~~~~~la~~~-----~g~sg~di~ 672 (772)
|.++ .+|+++.| ||. .|.|+.|+.+++.+||+.+..++.. . .+..+..+++.+ +++.+....
T Consensus 299 ~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai 375 (758)
T 3pxi_A 299 TLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAI 375 (758)
T ss_dssp CTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHH
T ss_pred ChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHH
Confidence 9988 79999999 995 6999999999999999988766422 2 233355555543 456677777
Q ss_pred HHHHHHHHHH
Q 044198 673 EICQRACKCA 682 (772)
Q Consensus 673 ~l~~~a~~~a 682 (772)
.++.+|+..+
T Consensus 376 ~ll~~a~~~~ 385 (758)
T 3pxi_A 376 DLIDEAGSKV 385 (758)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776544
No 107
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.59 E-value=1.7e-14 Score=154.70 Aligned_cols=195 Identities=23% Similarity=0.310 Sum_probs=139.1
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
++.+.+|+++.|.++.++.+.+++..... . -..+.++||+||||||||++|+++++.++.+++.++++.+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~-~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKA-------R-KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHH-------H-CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHc-------c-CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC
Confidence 34556789999999999999888764211 0 123568999999999999999999999999999999876522
Q ss_pred hcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc----------------ccCc
Q 044198 262 KMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK----------------SRAH 325 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~----------------~~~~ 325 (772)
...+...|... ...+.+|||||++.+.. .....|+..++... ...+
T Consensus 77 ------~~~l~~~l~~~-~~~~~~l~lDEi~~l~~-----------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 77 ------PGDLAAILANS-LEEGDILFIDEIHRLSR-----------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ------HHHHHHHHTTT-CCTTCEEEETTTTSCCH-----------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ------hHHHHHHHHHh-ccCCCEEEEECCccccc-----------chHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 22232333220 14577999999998752 22345555555432 1135
Q ss_pred eEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCchhhHHHHHHHHH
Q 044198 326 VMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVGADLAALCTEGA 404 (772)
Q Consensus 326 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~ 404 (772)
+.+|++||.+..+++++.+ ||...+.++.|+.+++.++++.+....... .+..++.++..+.|+. ..+..++..+.
T Consensus 139 ~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~-r~l~~~l~~~~ 215 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTM-RVAKRLFRRVR 215 (324)
T ss_dssp CEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCH-HHHHHHHHHHT
T ss_pred EEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCH-HHHHHHHHHHH
Confidence 8899999999999999987 998889999999999999999877644322 2234677777776654 56666666554
Q ss_pred H
Q 044198 405 M 405 (772)
Q Consensus 405 ~ 405 (772)
.
T Consensus 216 ~ 216 (324)
T 1hqc_A 216 D 216 (324)
T ss_dssp T
T ss_pred H
Confidence 3
No 108
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.58 E-value=2.1e-14 Score=157.50 Aligned_cols=203 Identities=20% Similarity=0.237 Sum_probs=140.5
Q ss_pred cccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh------CCcEEEEecccchh
Q 044198 461 WADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLT 534 (772)
Q Consensus 461 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~------~~~~i~v~~~~l~~ 534 (772)
.+++.|.+...+.+.+.+...+. -..+..++|+||||||||++++++++.+ +.+++.+++....+
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 36788888888888776653211 1345679999999999999999999988 88899998654321
Q ss_pred ------c----------ccccchHH-HHHHHHHHHhCC-CeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC
Q 044198 535 ------M----------WFGESEAN-VRDVFDKARQSA-PCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS 596 (772)
Q Consensus 535 ------~----------~vg~se~~-i~~vf~~a~~~~-p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~ 596 (772)
. ..|.+... ...+++...... |++|||||++.+..... ..++..|+..++..
T Consensus 90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~---------~~~l~~l~~~~~~~- 159 (386)
T 2qby_A 90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN---------DDILYKLSRINSEV- 159 (386)
T ss_dssp HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC---------STHHHHHHHHHHSC-
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc---------CHHHHHHhhchhhc-
Confidence 1 11222222 444555544443 89999999999975431 34677788888765
Q ss_pred CCCcEEEEeecCCC---CCCCccccCCCCcc-ccccCCCCCHHHHHHHHHHhhccCC---CCCcccHHHHHHHcCC--CC
Q 044198 597 AKKTVFVIGATNRP---DMIDPALLRPGRLD-QLIYIPLPDEHSRLQIFKSCLRKSP---VSKDIDLKAIAKYTHG--FS 667 (772)
Q Consensus 597 ~~~~v~vi~aTn~~---~~ld~allrpgRf~-~~i~~~~p~~~~r~~Il~~~~~~~~---~~~~~~~~~la~~~~g--~s 667 (772)
...++.+|++||.+ +.+++.+.+ ||. ..+.+++++.++..+|++..+.... ...+..+..+++.+.. -+
T Consensus 160 ~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~ 237 (386)
T 2qby_A 160 NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGD 237 (386)
T ss_dssp CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 34578899999887 467888887 776 4899999999999999998765311 1123345666766651 35
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044198 668 GADITEICQRACKCAIR 684 (772)
Q Consensus 668 g~di~~l~~~a~~~a~~ 684 (772)
.+.+.++|+.|...|..
T Consensus 238 ~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 238 ARRALDLLRVSGEIAER 254 (386)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 67777888888766643
No 109
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=1.1e-14 Score=158.14 Aligned_cols=187 Identities=19% Similarity=0.195 Sum_probs=133.3
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhC------CcEEEEecc
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQ------ANFISIKGP 530 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~------~~~i~v~~~ 530 (772)
....|+++.|.+++++.+...+.. ....+++|+||||||||++|+++|+.++ ..++.++++
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 445688999999988888777643 1123499999999999999999998864 457788877
Q ss_pred cchhcccccchHHHHHHHHHHH----------------hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcC
Q 044198 531 ELLTMWFGESEANVRDVFDKAR----------------QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDG 594 (772)
Q Consensus 531 ~l~~~~vg~se~~i~~vf~~a~----------------~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~ 594 (772)
+..+ ...++..+.... ...+.++||||+|.+. ....+.|+..|+.
T Consensus 99 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~-------------~~~~~~Ll~~le~ 159 (353)
T 1sxj_D 99 DERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-------------ADAQSALRRTMET 159 (353)
T ss_dssp SCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-------------HHHHHHHHHHHHH
T ss_pred cccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-------------HHHHHHHHHHHHh
Confidence 6321 122222222111 1235699999999983 3346778888876
Q ss_pred CCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHH
Q 044198 595 LSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITE 673 (772)
Q Consensus 595 ~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~ 673 (772)
... +..+|++||.++.+++++.+ |+. .+.|++|+.++...+++..+.+.++. ++..++.+++.+.| +.+.+.+
T Consensus 160 ~~~--~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~ 233 (353)
T 1sxj_D 160 YSG--VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGIT 233 (353)
T ss_dssp TTT--TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHH
T ss_pred cCC--CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 533 45667788999999999998 987 89999999999999999888665443 34557888888776 4566666
Q ss_pred HHHHHHHH
Q 044198 674 ICQRACKC 681 (772)
Q Consensus 674 l~~~a~~~ 681 (772)
+++.+...
T Consensus 234 ~l~~~~~~ 241 (353)
T 1sxj_D 234 LLQSASKG 241 (353)
T ss_dssp HHHHTHHH
T ss_pred HHHHHHHh
Confidence 66655544
No 110
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.57 E-value=3.5e-15 Score=167.84 Aligned_cols=192 Identities=16% Similarity=0.154 Sum_probs=120.4
Q ss_pred cccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCC--cEEEEec-----ccchhc
Q 044198 463 DIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQA--NFISIKG-----PELLTM 535 (772)
Q Consensus 463 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~--~~i~v~~-----~~l~~~ 535 (772)
.+.|.+++++.+...+.. ..++||+||||||||++|+++|..++. +|..+.+ +++++.
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 466777777666544321 357999999999999999999998843 4444433 344443
Q ss_pred ccccchHHHHHHHHHHHhC---CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC--------CCCcEEEE
Q 044198 536 WFGESEANVRDVFDKARQS---APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS--------AKKTVFVI 604 (772)
Q Consensus 536 ~vg~se~~i~~vf~~a~~~---~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~--------~~~~v~vi 604 (772)
+.+..... ...|..+... .++|+|||||+.+ ...+.+.|+..|+... .....++|
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-------------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI 153 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-------------GPAILNTLLTAINERQFRNGAHVEKIPMRLLV 153 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGC-------------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-------------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhh
Confidence 33322111 2223222222 4679999999765 3667888999997421 11223567
Q ss_pred eecCCCCC---CCccccCCCCccccccCCCCCH-HHHHHHHHHhhccC-------------------------CCCCccc
Q 044198 605 GATNRPDM---IDPALLRPGRLDQLIYIPLPDE-HSRLQIFKSCLRKS-------------------------PVSKDID 655 (772)
Q Consensus 605 ~aTn~~~~---ld~allrpgRf~~~i~~~~p~~-~~r~~Il~~~~~~~-------------------------~~~~~~~ 655 (772)
+|||.+.. +.+++++ ||...+++|+|+. +++.+|++...... .++ +.-
T Consensus 154 ~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~-d~v 230 (500)
T 3nbx_X 154 AASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLP-DHV 230 (500)
T ss_dssp EEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCC-HHH
T ss_pred hccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCc-hHH
Confidence 78885322 3458998 9999999999987 78899998765321 111 111
Q ss_pred HHHHHHHc---------CCCCHHHHHHHHHHHHHHHHHHH
Q 044198 656 LKAIAKYT---------HGFSGADITEICQRACKCAIREE 686 (772)
Q Consensus 656 ~~~la~~~---------~g~sg~di~~l~~~a~~~a~~~~ 686 (772)
++.+++.. .|.|.+.+..+++.|...|..+.
T Consensus 231 ~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~g 270 (500)
T 3nbx_X 231 FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSG 270 (500)
T ss_dssp HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcC
Confidence 33343332 47899999989888877776543
No 111
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.57 E-value=2e-14 Score=161.85 Aligned_cols=184 Identities=23% Similarity=0.363 Sum_probs=129.7
Q ss_pred CCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEE
Q 044198 184 DDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET----------GCYFLC 253 (772)
Q Consensus 184 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l----------~~~~~~ 253 (772)
.+-.++++.|.+++++.+.+.+.. ....++||+||||||||++|+++|..+ +.+++.
T Consensus 175 r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 175 KEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred hcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 345678899999999998887754 224689999999999999999999987 677888
Q ss_pred EechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeC
Q 044198 254 INGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATN 333 (772)
Q Consensus 254 v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn 333 (772)
+++. ..+.|+.+..++.+|..+....+.||||| . . ....+.|+..+ .+..+.+|++||
T Consensus 242 l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~-~---------~~a~~~L~~~L----~~g~v~vI~at~ 299 (468)
T 3pxg_A 242 LDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A-A---------IDASNILKPSL----ARGELQCIGATT 299 (468)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCT----TSSSCEEEEECC
T ss_pred eeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C-c---------hhHHHHHHHhh----cCCCEEEEecCC
Confidence 8876 66778888889999999998889999999 0 0 01122233333 356799999999
Q ss_pred CCC-----CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-----cccchhHHHHHhcCCchh-----hHHH
Q 044198 334 RPN-----SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-----EDVNLETVARETHGFVGA-----DLAA 398 (772)
Q Consensus 334 ~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-----~~~~l~~la~~t~g~~~~-----dl~~ 398 (772)
+++ .+|+++++ ||.. +.++.|+.+++.+||+.+....... .+..+..++..+.+|... ....
T Consensus 300 ~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ 376 (468)
T 3pxg_A 300 LDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (468)
T ss_dssp TTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred HHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHH
Confidence 987 68999999 9985 9999999999999999776543211 222356666666666543 5666
Q ss_pred HHHHHHH
Q 044198 399 LCTEGAM 405 (772)
Q Consensus 399 l~~~a~~ 405 (772)
++.+++.
T Consensus 377 ll~~a~~ 383 (468)
T 3pxg_A 377 LIDEAGS 383 (468)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6766654
No 112
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.56 E-value=9.5e-14 Score=149.04 Aligned_cols=194 Identities=16% Similarity=0.278 Sum_probs=128.4
Q ss_pred CCCcccccc-C--cHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEech
Q 044198 184 DDVGYEDVG-G--VRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGP 257 (772)
Q Consensus 184 ~~~~~~~i~-G--~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~ 257 (772)
+..+|+++. | .......++.++..|- ..+.+++|+||||||||++++++++.+ +.+++.+++.
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~~-----------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENLG-----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTTT-----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCcC-----------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 345666664 3 3444555555555431 235689999999999999999999988 8899999998
Q ss_pred hhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCC-
Q 044198 258 EIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPN- 336 (772)
Q Consensus 258 ~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~- 336 (772)
++...+.+.........|.... ..+.+|||||++.+..+. .....+..+++........+++++++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~---------~~~~~l~~~l~~~~~~~~~iii~~~~~~~~ 144 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE---------RTQIEFFHIFNTLYLLEKQIILASDRHPQK 144 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH---------HHHHHHHHHHHHHHHTTCEEEEEESSCGGG
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh---------HHHHHHHHHHHHHHHCCCeEEEEecCChHH
Confidence 8765544333222222333322 247899999999986421 12234555555444445567777777765
Q ss_pred --CCChhhhccCCce--eEEEeCCCCHHHHHHHHHHHhcc--CCcccccchhHHHHHhcCCchhhHHHHHHHHH
Q 044198 337 --SIDPALRRSGRFD--KEIDIGVPDEVGRLEVLRIHTKN--MKLAEDVNLETVARETHGFVGADLAALCTEGA 404 (772)
Q Consensus 337 --~ld~al~r~gRf~--~~i~i~~p~~~~r~~Il~~~~~~--~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~ 404 (772)
.+++++++ ||. ..+++++ +.+++.+|++.++.. ..+.++ .++.++..+ | ..+++..++..+.
T Consensus 145 l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~-~l~~l~~~~-g-~~r~l~~~l~~~~ 212 (324)
T 1l8q_A 145 LDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKE-VIDYLLENT-K-NVREIEGKIKLIK 212 (324)
T ss_dssp CTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHH-HHHHHHHHC-S-SHHHHHHHHHHHH
T ss_pred HHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhC-C-CHHHHHHHHHHHH
Confidence 68999998 885 6789999 999999999987754 333333 467778777 4 3455655555544
No 113
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.55 E-value=5.3e-14 Score=154.64 Aligned_cols=200 Identities=14% Similarity=0.124 Sum_probs=138.7
Q ss_pred cccccchHHHHHHHhhhccccCCchHHHhhcCCCCCC--ceEEeCCCCCchhHHHHHHHHHh----CCcEEEEecccchh
Q 044198 461 WADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSR--GVLFYGPPGCGKTLLAKAIANEC----QANFISIKGPELLT 534 (772)
Q Consensus 461 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~--~iLl~GppGtGKT~la~alA~~~----~~~~i~v~~~~l~~ 534 (772)
.+++.|.+...+.+...+..... + ..+. +++|+||||||||+++++++..+ +..++.+++....+
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~--------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLR--------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHH--------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 36788888888777766543111 1 2233 79999999999999999999988 56788888655321
Q ss_pred c---------c-------cccchHH-HHHHHHHHH-hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC
Q 044198 535 M---------W-------FGESEAN-VRDVFDKAR-QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS 596 (772)
Q Consensus 535 ~---------~-------vg~se~~-i~~vf~~a~-~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~ 596 (772)
. . .|.+... ...+..... ...|.+|||||+|.+ ....++.|+..++...
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-------------~~~~~~~L~~~~~~~~ 153 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-------------APDILSTFIRLGQEAD 153 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-------------CHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-------------chHHHHHHHHHHHhCC
Confidence 1 0 1112222 222222222 245789999999988 1456777888876543
Q ss_pred C--CCcEEEEeecCCC---CCCCccccCCCCccc-cccCCCCCHHHHHHHHHHhhcc---CCCCCcccHHHHHHHcC---
Q 044198 597 A--KKTVFVIGATNRP---DMIDPALLRPGRLDQ-LIYIPLPDEHSRLQIFKSCLRK---SPVSKDIDLKAIAKYTH--- 664 (772)
Q Consensus 597 ~--~~~v~vi~aTn~~---~~ld~allrpgRf~~-~i~~~~p~~~~r~~Il~~~~~~---~~~~~~~~~~~la~~~~--- 664 (772)
. ..++.+|++||.+ +.+++.+.+ ||.. .+.|++++.++..++++..+.. ...-++..++.+++.+.
T Consensus 154 ~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (389)
T 1fnn_A 154 KLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQT 231 (389)
T ss_dssp HHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSS
T ss_pred CCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcc
Confidence 2 1478899999988 678888877 8875 8999999999999999988754 11223455778888884
Q ss_pred -----CCCHHHHHHHHHHHHHHHHH
Q 044198 665 -----GFSGADITEICQRACKCAIR 684 (772)
Q Consensus 665 -----g~sg~di~~l~~~a~~~a~~ 684 (772)
+-+.+.+.++|+.|...|..
T Consensus 232 ~~~~~~G~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 232 PLDTNRGDARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp TTCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 22668888999988877654
No 114
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.55 E-value=2.5e-14 Score=152.77 Aligned_cols=188 Identities=21% Similarity=0.231 Sum_probs=132.3
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh-----CCcEEEEeccc
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPE 531 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~-----~~~~i~v~~~~ 531 (772)
....|+++.|.+.+++.+...+.. ....++||+||||||||++|++++..+ +.+++.+++++
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 78 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc
Confidence 445688999999999998877653 122349999999999999999999986 34678888876
Q ss_pred chhcccccchHHHHHHHHHH-H-hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCC
Q 044198 532 LLTMWFGESEANVRDVFDKA-R-QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNR 609 (772)
Q Consensus 532 l~~~~vg~se~~i~~vf~~a-~-~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~ 609 (772)
..+ .......+....... . ...+.++||||+|.+. ....+.|+..|+.. ..++.+|++||.
T Consensus 79 ~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-------------~~~~~~L~~~le~~--~~~~~~i~~~~~ 141 (319)
T 2chq_A 79 ERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-------------ADAQAALRRTMEMY--SKSCRFILSCNY 141 (319)
T ss_dssp TTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC-------------HHHHHTTGGGTSSS--SSSEEEEEEESC
T ss_pred ccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC-------------HHHHHHHHHHHHhc--CCCCeEEEEeCC
Confidence 432 111112222221110 1 1347899999999983 33466677777753 356788999999
Q ss_pred CCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHH
Q 044198 610 PDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRA 678 (772)
Q Consensus 610 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a 678 (772)
++.+++++.+ |+. .+.|++|+.+++.++++..+++.++. ++..++.+++.+.| +.+.+.++++.+
T Consensus 142 ~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~ 207 (319)
T 2chq_A 142 VSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGA 207 (319)
T ss_dssp GGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHH
T ss_pred hhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 9999999998 887 89999999999999999988776554 34456677765544 444444544444
No 115
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.54 E-value=3.5e-15 Score=145.87 Aligned_cols=150 Identities=22% Similarity=0.356 Sum_probs=111.3
Q ss_pred ccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh----------CCcEEEEec
Q 044198 460 RWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC----------QANFISIKG 529 (772)
Q Consensus 460 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~----------~~~~i~v~~ 529 (772)
.|+++.|.+...+.+.+.+.. ....+++|+||||||||++|++++..+ +.+++.++.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred ccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 567788888777666655432 235679999999999999999999987 778888888
Q ss_pred ccch--hcccccchHHHHHHHHHHHhC-CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEee
Q 044198 530 PELL--TMWFGESEANVRDVFDKARQS-APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGA 606 (772)
Q Consensus 530 ~~l~--~~~vg~se~~i~~vf~~a~~~-~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a 606 (772)
..+. ..+.|.....+..++..+... .|++|||||+|.+.+.+... .....+.+.|+..++. .++++|++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~----~~~~~~~~~l~~~~~~----~~~~ii~~ 158 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA----EGALDAGNILKPMLAR----GELRCIGA 158 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC----TTSCCTHHHHHHHHHT----TCSCEEEE
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc----ccchHHHHHHHHHHhc----CCeeEEEe
Confidence 7765 235566667788888877665 67899999999997654311 1123345555555553 46789999
Q ss_pred cCCCC-----CCCccccCCCCccccccCCCCC
Q 044198 607 TNRPD-----MIDPALLRPGRLDQLIYIPLPD 633 (772)
Q Consensus 607 Tn~~~-----~ld~allrpgRf~~~i~~~~p~ 633 (772)
||.++ .+|+++.+ ||+ .+++++|+
T Consensus 159 ~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 159 TTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp ECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred cCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 99875 68999998 999 59999886
No 116
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.52 E-value=2e-13 Score=149.68 Aligned_cols=203 Identities=18% Similarity=0.200 Sum_probs=133.3
Q ss_pred CccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---------CCeEEEEec
Q 044198 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---------GCYFLCING 256 (772)
Q Consensus 186 ~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---------~~~~~~v~~ 256 (772)
...+++.|.+++++.+..++...+. -..+.+++|+||||||||++++++++.+ +..++.++|
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3447899999999999887754221 1346689999999999999999999988 778899998
Q ss_pred hhhhhh----------------cccc-hHHHHHHHHHHHHH-cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhh
Q 044198 257 PEIMSK----------------MAGE-SESNLREAFNVAEK-NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMD 318 (772)
Q Consensus 257 ~~~~~~----------------~~g~-~~~~l~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld 318 (772)
....+. ..+. ....+..++..... ..+.+|||||+|.+.... ....++..++..++
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQ 160 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGG
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchh
Confidence 653211 1121 22224444444433 347799999999886432 01233334444443
Q ss_pred cccccCceEEEEeeCCC---CCCChhhhccCCcee-EEEeCCCCHHHHHHHHHHHhcc----CCcccccchhHHHHHhc-
Q 044198 319 GMKSRAHVMVIGATNRP---NSIDPALRRSGRFDK-EIDIGVPDEVGRLEVLRIHTKN----MKLAEDVNLETVARETH- 389 (772)
Q Consensus 319 ~~~~~~~v~vI~atn~~---~~ld~al~r~gRf~~-~i~i~~p~~~~r~~Il~~~~~~----~~l~~~~~l~~la~~t~- 389 (772)
......++.+|++||.+ +.+++.+.+ ||.. .+.+++|+.++..++++..+.. ..+.+ ..++.++..+.
T Consensus 161 ~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 237 (387)
T 2v1u_A 161 ELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP-DVVPLCAALAAR 237 (387)
T ss_dssp CC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS-SHHHHHHHHHHS
T ss_pred hcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHH
Confidence 32214678899999887 678999988 8864 7999999999999999877643 22322 24666777766
Q ss_pred --CCchhhHHHHHHHHHHHh
Q 044198 390 --GFVGADLAALCTEGAMQC 407 (772)
Q Consensus 390 --g~~~~dl~~l~~~a~~~~ 407 (772)
|. ...+..++..+...+
T Consensus 238 ~~G~-~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 238 EHGD-ARRALDLLRVAGEIA 256 (387)
T ss_dssp SSCC-HHHHHHHHHHHHHHH
T ss_pred hccC-HHHHHHHHHHHHHHH
Confidence 53 334556666665433
No 117
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.52 E-value=2.6e-14 Score=139.62 Aligned_cols=152 Identities=23% Similarity=0.396 Sum_probs=111.8
Q ss_pred CCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 044198 185 DVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET----------GCYFLCI 254 (772)
Q Consensus 185 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l----------~~~~~~v 254 (772)
+..++++.|.+++++.+.+.+.. ..+.+++|+||||||||++++++++.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred ccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 44677899999998888877643 235689999999999999999999987 6778888
Q ss_pred echhhhh--hcccchHHHHHHHHHHHHHc-CCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEe
Q 044198 255 NGPEIMS--KMAGESESNLREAFNVAEKN-APSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGA 331 (772)
Q Consensus 255 ~~~~~~~--~~~g~~~~~l~~~f~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~a 331 (772)
++..+.. .+.+.....+..++..+... .+.+|||||++.+.+.+..... ...+.+.|..+++ ...+.+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~--~~~~~~~l~~~~~----~~~~~ii~~ 158 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEG--ALDAGNILKPMLA----RGELRCIGA 158 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTT--SCCTHHHHHHHHH----TTCSCEEEE
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccccc--chHHHHHHHHHHh----cCCeeEEEe
Confidence 8877653 23455566777788777664 6789999999999755431111 1123344444443 356788899
Q ss_pred eCCCC-----CCChhhhccCCceeEEEeCCCC
Q 044198 332 TNRPN-----SIDPALRRSGRFDKEIDIGVPD 358 (772)
Q Consensus 332 tn~~~-----~ld~al~r~gRf~~~i~i~~p~ 358 (772)
+|.+. .+++++++ ||.. +.++.|+
T Consensus 159 ~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 159 TTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp ECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred cCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 98775 68999999 9996 8998885
No 118
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=6.6e-14 Score=149.75 Aligned_cols=184 Identities=18% Similarity=0.189 Sum_probs=133.6
Q ss_pred CcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh-----CCcEEEEecccc
Q 044198 458 NVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPEL 532 (772)
Q Consensus 458 ~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~-----~~~~i~v~~~~l 532 (772)
...|+++.|.+.+.+.+...+.. + . ..+++|+||||+|||++|++++..+ +.+++.+++++.
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~-----------~-~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKD-----------G-N-MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHS-----------C-C-CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred CCCHHHHHCCHHHHHHHHHHHHc-----------C-C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 34678899999998888877543 1 1 2339999999999999999999886 345788887653
Q ss_pred hhcccccchHHHHHHHHHHH-------hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEe
Q 044198 533 LTMWFGESEANVRDVFDKAR-------QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIG 605 (772)
Q Consensus 533 ~~~~vg~se~~i~~vf~~a~-------~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 605 (772)
. +...++.+++... ...+.++||||+|.+. ....+.|+..++.. ..++.+|+
T Consensus 84 ~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~-------------~~~~~~L~~~le~~--~~~~~~il 142 (323)
T 1sxj_B 84 R------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT-------------AGAQQALRRTMELY--SNSTRFAF 142 (323)
T ss_dssp C------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC-------------HHHHHTTHHHHHHT--TTTEEEEE
T ss_pred c------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCC-------------HHHHHHHHHHHhcc--CCCceEEE
Confidence 2 2345566665544 3347899999999983 23456677777753 34677888
Q ss_pred ecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 044198 606 ATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRAC 679 (772)
Q Consensus 606 aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~ 679 (772)
+||.++.+.+++.+ |+. .+.|++|+.+++.++++..+++.++. ++..+..+++.+.| +.+.+.++++.+.
T Consensus 143 ~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 143 ACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTV 213 (323)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred EeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 88999999999987 887 89999999999999999887654433 34456778887765 4445555554443
No 119
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=7.8e-14 Score=149.48 Aligned_cols=185 Identities=23% Similarity=0.303 Sum_probs=133.1
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhC-----CcEEEEeccc
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKGPE 531 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~-----~~~i~v~~~~ 531 (772)
....|+++.|.+.+++.+...+.. + ...++||+||||||||++|++++..+. ..++.+++++
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 445688999999999888876543 1 223599999999999999999998863 3477777765
Q ss_pred chhcccccchHHHHHHHHHH-H-----hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEe
Q 044198 532 LLTMWFGESEANVRDVFDKA-R-----QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIG 605 (772)
Q Consensus 532 l~~~~vg~se~~i~~vf~~a-~-----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 605 (772)
..+. ..++..+... . ...+.++||||+|.+. ....+.|+..|+.. ..++.+|+
T Consensus 87 ~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-------------~~~~~~L~~~le~~--~~~~~~i~ 145 (327)
T 1iqp_A 87 ERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALT-------------QDAQQALRRTMEMF--SSNVRFIL 145 (327)
T ss_dssp HHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-------------HHHHHHHHHHHHHT--TTTEEEEE
T ss_pred cCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-------------HHHHHHHHHHHHhc--CCCCeEEE
Confidence 4221 1222222221 1 1346899999999883 34567788888753 34677888
Q ss_pred ecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 044198 606 ATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRAC 679 (772)
Q Consensus 606 aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a~ 679 (772)
+||.++.+.+++.+ |+. .+.|++|+.++..++++..+++.++. ++..++.+++.+.| +.+.+.++++.+.
T Consensus 146 ~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 146 SCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp EESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred EeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 99999999999987 887 89999999999999999888765543 34456778877755 5566666665554
No 120
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.52 E-value=5.1e-14 Score=148.86 Aligned_cols=159 Identities=13% Similarity=0.137 Sum_probs=113.9
Q ss_pred ccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCeEEEEechhhh
Q 044198 191 VGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET----------GCYFLCINGPEIM 260 (772)
Q Consensus 191 i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l----------~~~~~~v~~~~~~ 260 (772)
+.|-++++++|...+...+. -..+.+++|+||||||||++++.+++++ ...++.+||..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~---------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM---------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 66777788887766654322 2457889999999999999999999988 3467899986543
Q ss_pred h----------hc------ccchHHHHHHHHHHH--HHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccc
Q 044198 261 S----------KM------AGESESNLREAFNVA--EKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKS 322 (772)
Q Consensus 261 ~----------~~------~g~~~~~l~~~f~~a--~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~ 322 (772)
+ .. .+.....++..|... ....+.|+++||+|.+. . +.++..|+.+.. ..
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~---------q~~L~~l~~~~~--~~ 160 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S---------EKILQYFEKWIS--SK 160 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C---------THHHHHHHHHHH--CS
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c---------chHHHHHHhccc--cc
Confidence 2 11 233456778888764 34567899999999997 1 233444444332 23
Q ss_pred cCceEEEEeeCCCCCC----ChhhhccCCce-eEEEeCCCCHHHHHHHHHHHhcc
Q 044198 323 RAHVMVIGATNRPNSI----DPALRRSGRFD-KEIDIGVPDEVGRLEVLRIHTKN 372 (772)
Q Consensus 323 ~~~v~vI~atn~~~~l----d~al~r~gRf~-~~i~i~~p~~~~r~~Il~~~~~~ 372 (772)
..++.+|+++|..+.. ++++++ ||. ..|.|++++.++..+|++..+..
T Consensus 161 ~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 161 NSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp SCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 4678999999988643 445566 786 67999999999999999977654
No 121
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.52 E-value=3.8e-13 Score=147.43 Aligned_cols=216 Identities=19% Similarity=0.252 Sum_probs=133.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhH------------------HHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeE
Q 044198 190 DVGGVRKQLGQIREVVELPLRHPQI------------------FKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYF 251 (772)
Q Consensus 190 ~i~G~~~~~~~i~~~i~~~l~~~~~------------------~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~ 251 (772)
.|.|+++.++.|..++..+...... ... ...++.++||+||||||||++|+++|+.++.++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~-~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEE-VELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH-TTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccc-cccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4889999999998877432222111 011 123456799999999999999999999999999
Q ss_pred EEEechhhh-hhcccch-HHHHHHHHHHH----HHcCCceEEeccccccccCCCCCc---hhhHHHHHHHHHHHhhccc-
Q 044198 252 LCINGPEIM-SKMAGES-ESNLREAFNVA----EKNAPSIIFIDEIDSIAPKREKTH---GEVEKRIVSQLLTLMDGMK- 321 (772)
Q Consensus 252 ~~v~~~~~~-~~~~g~~-~~~l~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~L~~lld~~~- 321 (772)
+.+++..+. ..+.|.. +..+...+... ....++++||||+|.+...+.... +.....+.+.|+.+|++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999998764 2344432 44455555432 234578999999999987643211 1111236788888888542
Q ss_pred ------------------ccCceEEEEeeCCC-----------------------------------------CCCChhh
Q 044198 322 ------------------SRAHVMVIGATNRP-----------------------------------------NSIDPAL 342 (772)
Q Consensus 322 ------------------~~~~v~vI~atn~~-----------------------------------------~~ld~al 342 (772)
...++.+|+++|.. ..+.|++
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 12456788887621 1245777
Q ss_pred hccCCceeEEEeCCCCHHHHHHHHHH----Hhc---------c--CCcccccchhHHHHHhc--CCchhhHHHHHHHHHH
Q 044198 343 RRSGRFDKEIDIGVPDEVGRLEVLRI----HTK---------N--MKLAEDVNLETVARETH--GFVGADLAALCTEGAM 405 (772)
Q Consensus 343 ~r~gRf~~~i~i~~p~~~~r~~Il~~----~~~---------~--~~l~~~~~l~~la~~t~--g~~~~dl~~l~~~a~~ 405 (772)
.+ ||+..+.+++++.++..+|+.. ... + +.+. +..++.++.... ....+.+..++..+..
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~l~~~~~~~~~~~R~L~~~le~~~~ 337 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFE-EEAIKEIAQLALERKTGARGLRAIIEDFCL 337 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEEC-HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEEC-HHHHHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 76 9988899999999999888862 110 1 1111 223455655533 3556788887777665
Q ss_pred Hhhh
Q 044198 406 QCIR 409 (772)
Q Consensus 406 ~~~~ 409 (772)
..+.
T Consensus 338 ~~~~ 341 (376)
T 1um8_A 338 DIMF 341 (376)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 122
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.51 E-value=1.1e-13 Score=151.47 Aligned_cols=184 Identities=22% Similarity=0.313 Sum_probs=136.2
Q ss_pred cccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc---------------
Q 044198 459 VRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN--------------- 523 (772)
Q Consensus 459 v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~--------------- 523 (772)
..|+++.|.+.+.+.+...+.. + ..+..++|+||||||||++|+++|+.++..
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 80 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHH
T ss_pred CchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 4678899999999888876642 1 224468999999999999999999987542
Q ss_pred ---------EEEEecccchhcccccchHHHHHHHHHHHh----CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHH
Q 044198 524 ---------FISIKGPELLTMWFGESEANVRDVFDKARQ----SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLT 590 (772)
Q Consensus 524 ---------~i~v~~~~l~~~~vg~se~~i~~vf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~ 590 (772)
++.+++.. ......++.+++.+.. ..+.|+||||+|.+. ....+.|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-------------~~~~~~Ll~ 141 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-------------RHSFNALLK 141 (373)
T ss_dssp HHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-------------HHHHHHHHH
T ss_pred HHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-------------HHHHHHHHH
Confidence 23332221 0122346777776653 346899999999882 345778888
Q ss_pred HhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCCCCHH
Q 044198 591 EMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHGFSGA 669 (772)
Q Consensus 591 ~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~ 669 (772)
.++.. ..++++|++||.++.+.+++.+ |+ ..+.|++|+.++..++++..+++.++. ++..+..+++.+.| +.+
T Consensus 142 ~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r 215 (373)
T 1jr3_A 142 TLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR 215 (373)
T ss_dssp HHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHH
T ss_pred HHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHH
Confidence 88864 4578888888888899999987 88 589999999999999999888765544 33446778888866 778
Q ss_pred HHHHHHHHHH
Q 044198 670 DITEICQRAC 679 (772)
Q Consensus 670 di~~l~~~a~ 679 (772)
++.+++..+.
T Consensus 216 ~~~~~l~~~~ 225 (373)
T 1jr3_A 216 DALSLTDQAI 225 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887764
No 123
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.50 E-value=2.9e-13 Score=145.21 Aligned_cols=178 Identities=18% Similarity=0.269 Sum_probs=128.2
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
+..+.+++++.|.++.++.+++++.. -..+..+|++||||||||++++++++.++..++.+++++..
T Consensus 19 k~rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~- 85 (324)
T 3u61_B 19 KYRPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK- 85 (324)
T ss_dssp HSCCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-
T ss_pred hhCCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-
Confidence 34567889999999999999988873 13345688889999999999999999999999999986531
Q ss_pred hcccchHHHHHHHHHHHHHc-----CCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCC
Q 044198 262 KMAGESESNLREAFNVAEKN-----APSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPN 336 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~-----~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~ 336 (772)
...++..+...... .+.++||||+|.+.. ....+.|+..++... .++.+|++||++.
T Consensus 86 ------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~~--~~~~iI~~~n~~~ 147 (324)
T 3u61_B 86 ------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAYS--SNCSIIITANNID 147 (324)
T ss_dssp ------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHHG--GGCEEEEEESSGG
T ss_pred ------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhCC--CCcEEEEEeCCcc
Confidence 34455544443332 467999999998851 123456777776543 4578888999999
Q ss_pred CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhc---------cCCcccccchhHHHHHhcCCch
Q 044198 337 SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTK---------NMKLAEDVNLETVARETHGFVG 393 (772)
Q Consensus 337 ~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~---------~~~l~~~~~l~~la~~t~g~~~ 393 (772)
.+++++++ ||. .+.|+.|+.+++.+|++.... ++.+.+...++.++..+.|-..
T Consensus 148 ~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R 210 (324)
T 3u61_B 148 GIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFR 210 (324)
T ss_dssp GSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTT
T ss_pred ccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHH
Confidence 99999999 885 599999999998777654322 2223221345666666555433
No 124
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.50 E-value=3.8e-13 Score=143.29 Aligned_cols=204 Identities=18% Similarity=0.251 Sum_probs=133.6
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc--
Q 044198 189 EDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKM-- 263 (772)
Q Consensus 189 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~-- 263 (772)
.++.|.+..++.+...+....... .. .-.+..++||+||||||||++|+++++.+ +.+++.+++..+....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~---~~-~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL---KD-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC---SC-TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC---CC-CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 357899999999988776421000 00 01233479999999999999999999988 4568999987653211
Q ss_pred ---ccchH-----HHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccc---------cCce
Q 044198 264 ---AGESE-----SNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKS---------RAHV 326 (772)
Q Consensus 264 ---~g~~~-----~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~---------~~~v 326 (772)
.|... .....+.........+++||||+|.+.+ .+.+.|+.+++...- -.++
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 161 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP-----------DVFNILLQMLDDGRLTDSHGRTVDFRNT 161 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEECTTSCEEECTTE
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH-----------HHHHHHHHHHhcCEEEcCCCCEEECCCc
Confidence 11000 0001222333334458999999998742 455677777765321 1367
Q ss_pred EEEEeeCC--------------------------CCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccC-------
Q 044198 327 MVIGATNR--------------------------PNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNM------- 373 (772)
Q Consensus 327 ~vI~atn~--------------------------~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~------- 373 (772)
++|+|||. ...+++++.+ ||+..+.+++|+.+++.+|++.++...
T Consensus 162 iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~ 239 (311)
T 4fcw_A 162 VIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEK 239 (311)
T ss_dssp EEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTT
T ss_pred EEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 79999998 3467888886 999999999999999999998765432
Q ss_pred --Cc-ccccchhHHHHHhc--CCchhhHHHHHHHHHHHhhh
Q 044198 374 --KL-AEDVNLETVARETH--GFVGADLAALCTEGAMQCIR 409 (772)
Q Consensus 374 --~l-~~~~~l~~la~~t~--g~~~~dl~~l~~~a~~~~~~ 409 (772)
.+ ..+..++.++.... ....+++..++..+...++.
T Consensus 240 ~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~ 280 (311)
T 4fcw_A 240 RISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLA 280 (311)
T ss_dssp TCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHH
T ss_pred CcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHH
Confidence 11 11223555665444 46678888888877665543
No 125
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.50 E-value=2.7e-13 Score=151.35 Aligned_cols=199 Identities=20% Similarity=0.278 Sum_probs=130.3
Q ss_pred CCCcccccc-CcHH--HHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEe
Q 044198 184 DDVGYEDVG-GVRK--QLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET-----GCYFLCIN 255 (772)
Q Consensus 184 ~~~~~~~i~-G~~~--~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l-----~~~~~~v~ 255 (772)
+..+|+++. |... ....+..+...| + . +.+++|+||||||||+|++++++.+ +.++++++
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 456788765 5333 333344443332 1 1 5689999999999999999999988 77889999
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCC
Q 044198 256 GPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP 335 (772)
Q Consensus 256 ~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~ 335 (772)
+.++...+...........|.......+.+|||||++.+..+. .....|+..++........+++++.+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~---------~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT---------GVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH---------HHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh---------HHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 9887554433222211122333333368899999999986431 1224455555554444556666665655
Q ss_pred CC---CChhhhccCCce--eEEEeCCCCHHHHHHHHHHHhcc--CCcccccchhHHHHHhcCCchhhHHHHHHHHHHHh
Q 044198 336 NS---IDPALRRSGRFD--KEIDIGVPDEVGRLEVLRIHTKN--MKLAEDVNLETVARETHGFVGADLAALCTEGAMQC 407 (772)
Q Consensus 336 ~~---ld~al~r~gRf~--~~i~i~~p~~~~r~~Il~~~~~~--~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~ 407 (772)
.. +++++++ ||. ..+.++.|+.++|.+|++..+.. +.+.++ .++.++..+.| ..+++..++..+...+
T Consensus 239 ~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e-~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 239 QKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp GGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 54 7899998 785 77899999999999999987653 334443 36778877765 5567777776665443
No 126
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=6.4e-15 Score=170.16 Aligned_cols=163 Identities=20% Similarity=0.221 Sum_probs=105.9
Q ss_pred cccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEE----ecccchhccc-
Q 044198 463 DIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISI----KGPELLTMWF- 537 (772)
Q Consensus 463 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v----~~~~l~~~~v- 537 (772)
.|.|++.+|+.+...+..-... ......++...++||+||||||||++|+++|..+...++.. ++.++....+
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~--~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPK--VLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCE--ETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred hhcChHHHHHHHHHHHhCCCcc--cccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 4778899988876544321100 00001233445899999999999999999999987665432 2223222211
Q ss_pred ----ccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-----------CCCcEE
Q 044198 538 ----GESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-----------AKKTVF 602 (772)
Q Consensus 538 ----g~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-----------~~~~v~ 602 (772)
|..... ...+..|. .+|+||||||.+. ....+.|+..|+... ...++.
T Consensus 374 ~~~~g~~~~~-~G~l~~A~---~gil~IDEid~l~-------------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~ 436 (595)
T 3f9v_A 374 EKGTGEYYLE-AGALVLAD---GGIAVIDEIDKMR-------------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAA 436 (595)
T ss_dssp GGGTSSCSEE-ECHHHHHS---SSEECCTTTTCCC-------------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCE
T ss_pred cccccccccc-CCeeEecC---CCcEEeehhhhCC-------------HhHhhhhHHHHhCCEEEEecCCcEEEecCceE
Confidence 111000 11233342 2599999999872 456788899988532 134688
Q ss_pred EEeecCCCC-------------CCCccccCCCCccc-cccCCCCCHHHHHHHHHHhhcc
Q 044198 603 VIGATNRPD-------------MIDPALLRPGRLDQ-LIYIPLPDEHSRLQIFKSCLRK 647 (772)
Q Consensus 603 vi~aTn~~~-------------~ld~allrpgRf~~-~i~~~~p~~~~r~~Il~~~~~~ 647 (772)
||+|||.++ .|++++++ |||. .+..+.|+.+ ...|.+..++.
T Consensus 437 vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 437 VIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp EEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred EEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 999999986 89999998 9984 5555677777 88888877754
No 127
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.49 E-value=3.4e-13 Score=170.08 Aligned_cols=115 Identities=23% Similarity=0.303 Sum_probs=84.6
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccch----hcccc------------cchHHHHHHHHHHH
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELL----TMWFG------------ESEANVRDVFDKAR 552 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~----~~~vg------------~se~~i~~vf~~a~ 552 (772)
|+.++.+++|+||||||||+||.+++.+. +.....++..+.+ .+..| .+++.++.+++.++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 47788999999999999999999998775 3344444444321 22223 45678888999999
Q ss_pred hCCCeEEEEcCchhhhhcc---CCCCCCCCc--hhHHHHHHHHHhcCCCCCCcEEEEeec
Q 044198 553 QSAPCVLFFDELDSIAIQR---GSSVGDGGG--VDRIVNQLLTEMDGLSAKKTVFVIGAT 607 (772)
Q Consensus 553 ~~~p~ilfiDEid~l~~~r---~~~~~~~~~--~~~~~~~lL~~ld~~~~~~~v~vi~aT 607 (772)
...|++|||||++.+.+.+ +.. +++.. ..|+++++|.+|.+.....+++||++-
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~-~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEI-GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCT-TCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccc-cccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 9999999999999988753 322 22222 478999999999998777777666654
No 128
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.48 E-value=5e-13 Score=149.00 Aligned_cols=184 Identities=22% Similarity=0.254 Sum_probs=127.1
Q ss_pred CCCCccccccCcHHHH---HHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 044198 183 LDDVGYEDVGGVRKQL---GQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEI 259 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~---~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~ 259 (772)
..+.+++++.|.+..+ ..|+..+... ...++||+||||||||++|+++++.++.+++.+++...
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~ 86 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS 86 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC
Confidence 4556788999999998 6777776541 13579999999999999999999999999999986432
Q ss_pred hhhcccchHHHHHHHHHHHH----HcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEee--C
Q 044198 260 MSKMAGESESNLREAFNVAE----KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGAT--N 333 (772)
Q Consensus 260 ~~~~~g~~~~~l~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~at--n 333 (772)
....++.++..+. ...+.+|||||+|.+.... .+.|+..++. ..+.+|++| |
T Consensus 87 -------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~-----------q~~LL~~le~----~~v~lI~att~n 144 (447)
T 3pvs_A 87 -------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ-----------QDAFLPHIED----GTITFIGATTEN 144 (447)
T ss_dssp -------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT----TSCEEEEEESSC
T ss_pred -------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH-----------HHHHHHHHhc----CceEEEecCCCC
Confidence 2334555555444 3467899999999885432 2345566653 456777776 4
Q ss_pred CCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCC-------c-ccccchhHHHHHhcCCchhhHHHHHHHHHH
Q 044198 334 RPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMK-------L-AEDVNLETVARETHGFVGADLAALCTEGAM 405 (772)
Q Consensus 334 ~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~-------l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 405 (772)
+...+++++.+ |+. .+.+..|+.++..++++..+.... + .++..++.++..+.|.. +.+..++..+..
T Consensus 145 ~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~-R~lln~Le~a~~ 220 (447)
T 3pvs_A 145 PSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDA-RRALNTLEMMAD 220 (447)
T ss_dssp GGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCH-HHHHHHHHHHHH
T ss_pred cccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCH-HHHHHHHHHHHH
Confidence 44689999998 876 578999999999999998765411 1 12224667777765533 344555555543
No 129
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.48 E-value=2.1e-12 Score=129.55 Aligned_cols=174 Identities=20% Similarity=0.210 Sum_probs=122.3
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEech
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET-----GCYFLCINGP 257 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l-----~~~~~~v~~~ 257 (772)
..+..++++.|.++.++.+.+++... ...+++|+||||||||++++++++.+ ...++.+++.
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc
Confidence 45567889999999999998888641 23359999999999999999999886 3456777765
Q ss_pred hhhhhcccchHHHHHHHHHHHH------HcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEe
Q 044198 258 EIMSKMAGESESNLREAFNVAE------KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGA 331 (772)
Q Consensus 258 ~~~~~~~g~~~~~l~~~f~~a~------~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~a 331 (772)
.... ...+...+.... ...+.+|+|||++.+.+ ...+.|..+++.. ..++.+|++
T Consensus 78 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~--~~~~~~i~~ 138 (226)
T 2chg_A 78 DERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEMY--SKSCRFILS 138 (226)
T ss_dssp CTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHT--TTTEEEEEE
T ss_pred cccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-----------HHHHHHHHHHHhc--CCCCeEEEE
Confidence 4321 122222232222 24578999999998753 1235566666653 346778889
Q ss_pred eCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCC
Q 044198 332 TNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGF 391 (772)
Q Consensus 332 tn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 391 (772)
+|.+..+++++.+ ||. .+.+++|+.++..++++......... ++..++.++..+.|.
T Consensus 139 ~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~ 196 (226)
T 2chg_A 139 CNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGD 196 (226)
T ss_dssp ESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC
T ss_pred eCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 9999999999988 887 79999999999999998776432221 222456677666553
No 130
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=5e-13 Score=145.11 Aligned_cols=186 Identities=16% Similarity=0.211 Sum_probs=128.8
Q ss_pred CCcccccccchHHHHHHHhhhc-cccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCC-------------
Q 044198 457 PNVRWADIGGLDTVKRELQETV-QYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQA------------- 522 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i-~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~------------- 522 (772)
...+|+++.|.+.+.+.+...+ .. + ..+ +++|+||||+|||++++++|+.+..
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSDQP-----------R-DLP-HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTTCT-----------T-CCC-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred CCCCHHHhcCCHHHHHHHHHHHhhC-----------C-CCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence 3456889999999999888776 22 1 122 3999999999999999999996411
Q ss_pred ----------------cEEEEecccchhccccc-chHHHHHHHHHHH--------------hCCCeEEEEcCchhhhhcc
Q 044198 523 ----------------NFISIKGPELLTMWFGE-SEANVRDVFDKAR--------------QSAPCVLFFDELDSIAIQR 571 (772)
Q Consensus 523 ----------------~~i~v~~~~l~~~~vg~-se~~i~~vf~~a~--------------~~~p~ilfiDEid~l~~~r 571 (772)
.++.++.++. +. ....+++.++.+. ...|.+++|||++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L---- 146 (354)
T 1sxj_E 76 VTASNRKLELNVVSSPYHLEITPSDM-----GNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL---- 146 (354)
T ss_dssp ----------CCEECSSEEEECCC---------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS----
T ss_pred cccccccceeeeecccceEEecHhhc-----CCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc----
Confidence 1222322221 11 1113555555442 225679999999986
Q ss_pred CCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC
Q 044198 572 GSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS 651 (772)
Q Consensus 572 ~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~ 651 (772)
.....+.|+..|+... .+..+|.+||.++.+.+++.+ |+ ..+.|++|+.+++.++++..+++.++.
T Consensus 147 ---------~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 147 ---------TKDAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp ---------CHHHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred ---------CHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 2345677888887653 357888889999999999987 99 689999999999999999888665443
Q ss_pred -C-cccHHHHHHHcCCCCHHHHHHHHHHHH
Q 044198 652 -K-DIDLKAIAKYTHGFSGADITEICQRAC 679 (772)
Q Consensus 652 -~-~~~~~~la~~~~g~sg~di~~l~~~a~ 679 (772)
+ +..++.+++.+.| +.+++.++++.+.
T Consensus 213 ~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 213 LETKDILKRIAQASNG-NLRVSLLMLESMA 241 (354)
T ss_dssp ECCSHHHHHHHHHHTT-CHHHHHHHHTHHH
T ss_pred CCcHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 3 4557888887765 5555556665554
No 131
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.48 E-value=1.4e-12 Score=133.05 Aligned_cols=186 Identities=15% Similarity=0.114 Sum_probs=121.5
Q ss_pred CccccccC---cHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CeEEEEechhh
Q 044198 186 VGYEDVGG---VRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG---CYFLCINGPEI 259 (772)
Q Consensus 186 ~~~~~i~G---~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~---~~~~~v~~~~~ 259 (772)
.+|+++.| .++.++.++.++.. ..+.+++|+||||||||++++++++.+. ..++.+++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 45666664 34666666666543 2357899999999999999999998874 67888888776
Q ss_pred hhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCce-EEEEeeCCCC--
Q 044198 260 MSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHV-MVIGATNRPN-- 336 (772)
Q Consensus 260 ~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v-~vI~atn~~~-- 336 (772)
....... ++. ...+.+++|||++.+.... .....|..+++.......+ ++++++..+.
T Consensus 92 ~~~~~~~--------~~~--~~~~~vliiDe~~~~~~~~---------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 92 ASISTAL--------LEG--LEQFDLICIDDVDAVAGHP---------LWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp GGSCGGG--------GTT--GGGSSEEEEETGGGGTTCH---------HHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred HHHHHHH--------HHh--ccCCCEEEEeccccccCCH---------HHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 5443211 111 1346799999999885421 1234455555554444444 4444444443
Q ss_pred -CCChhhhccCCce--eEEEeCCCCHHHHHHHHHHHhccCC--cccccchhHHHHHhcCCchhhHHHHHHHHHHHh
Q 044198 337 -SIDPALRRSGRFD--KEIDIGVPDEVGRLEVLRIHTKNMK--LAEDVNLETVARETHGFVGADLAALCTEGAMQC 407 (772)
Q Consensus 337 -~ld~al~r~gRf~--~~i~i~~p~~~~r~~Il~~~~~~~~--l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~ 407 (772)
.+++++.+ ||. ..++++.|+.+++.++++.++.... +.+ ..++.++..+.| ..+++..++..+...+
T Consensus 153 ~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~~~g-~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 153 GFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPE-DVGRFLLNRMAR-DLRTLFDVLDRLDKAS 224 (242)
T ss_dssp TCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCH-HHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 45688887 775 8899999999999999998765332 332 246677777655 4556666666655443
No 132
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.46 E-value=1.4e-12 Score=143.09 Aligned_cols=192 Identities=19% Similarity=0.194 Sum_probs=129.1
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh-----------CCeEEEEech
Q 044198 189 EDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET-----------GCYFLCINGP 257 (772)
Q Consensus 189 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l-----------~~~~~~v~~~ 257 (772)
+++.|.+++++.+.+++...... ..+.+++|+||||||||++++++++.+ +.+++.++|.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 67999999999998887643221 345689999999999999999999987 8899999986
Q ss_pred hhh-hh----------c-------ccc-hHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhh
Q 044198 258 EIM-SK----------M-------AGE-SESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMD 318 (772)
Q Consensus 258 ~~~-~~----------~-------~g~-~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld 318 (772)
... .. . .+. ....+..++..+....+ +|||||+|.+..... ..+ .+..+++
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~-------~~~--~l~~l~~ 160 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG-------GDI--VLYQLLR 160 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT-------SHH--HHHHHHT
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC-------Cce--eHHHHhc
Confidence 543 10 0 011 12234444444433333 999999999864321 111 0233333
Q ss_pred cccccCceEEEEeeCCC---CCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhcc----CCcccccchhHHHHHhcCC
Q 044198 319 GMKSRAHVMVIGATNRP---NSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKN----MKLAEDVNLETVARETHGF 391 (772)
Q Consensus 319 ~~~~~~~v~vI~atn~~---~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~----~~l~~~~~l~~la~~t~g~ 391 (772)
.. .++.+|++||.+ +.+++++++ ||...+.+++|+.++..++++.++.. ..+. +..++.+++.+.+.
T Consensus 161 ~~---~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 234 (384)
T 2qby_B 161 SD---ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEILSYIAAISAKE 234 (384)
T ss_dssp SS---SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHHHHHHHTT
T ss_pred CC---cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHHHHHHHhc
Confidence 22 678899999887 678999988 88779999999999999999987652 2232 22466777777632
Q ss_pred ch--hhHHHHHHHHHH
Q 044198 392 VG--ADLAALCTEGAM 405 (772)
Q Consensus 392 ~~--~dl~~l~~~a~~ 405 (772)
.| ..+..++..+..
T Consensus 235 ~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 235 HGDARKAVNLLFRAAQ 250 (384)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 22 233445555543
No 133
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.46 E-value=7.6e-13 Score=142.39 Aligned_cols=152 Identities=23% Similarity=0.284 Sum_probs=107.4
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEech------hhhh
Q 044198 188 YEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGP------EIMS 261 (772)
Q Consensus 188 ~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~------~~~~ 261 (772)
++++.|.++.++.+...+.. +.++||+||||||||++|+++++.++.+++.+++. ++.+
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred ccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 45688888888777665543 35899999999999999999999999999888873 2222
Q ss_pred hcccchHHHHHHHHHHHHHcC---CceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcc---------cccCceEEE
Q 044198 262 KMAGESESNLREAFNVAEKNA---PSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGM---------KSRAHVMVI 329 (772)
Q Consensus 262 ~~~g~~~~~l~~~f~~a~~~~---p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~---------~~~~~v~vI 329 (772)
........ ..|. .... .+++||||++.+.+ ...+.|+..++.. ....++++|
T Consensus 91 ~~~~~~~~---~~~~--~~~g~l~~~vl~iDEi~~~~~-----------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~vi 154 (331)
T 2r44_A 91 TMIYNQHK---GNFE--VKKGPVFSNFILADEVNRSPA-----------KVQSALLECMQEKQVTIGDTTYPLDNPFLVL 154 (331)
T ss_dssp EEEEETTT---TEEE--EEECTTCSSEEEEETGGGSCH-----------HHHHHHHHHHHHSEEEETTEEEECCSSCEEE
T ss_pred ceeecCCC---CceE--eccCcccccEEEEEccccCCH-----------HHHHHHHHHHhcCceeeCCEEEECCCCEEEE
Confidence 11100000 0000 0011 36999999998642 3345666666542 123468888
Q ss_pred EeeCCCC-----CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhcc
Q 044198 330 GATNRPN-----SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKN 372 (772)
Q Consensus 330 ~atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~ 372 (772)
+|+|+.+ .+++++++ ||...+.++.|+.+++.+|++.+...
T Consensus 155 at~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 155 ATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp EEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred EecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 9999764 38999998 99988999999999999999987654
No 134
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.45 E-value=1e-13 Score=161.24 Aligned_cols=261 Identities=19% Similarity=0.246 Sum_probs=159.4
Q ss_pred ccCCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCc---EEEEeccc
Q 044198 455 EVPNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQAN---FISIKGPE 531 (772)
Q Consensus 455 ~~~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~---~i~v~~~~ 531 (772)
..+...|+++.|++.+.+.+...+.. ..+++|+||||||||++|+++|+.+... .+.+.+..
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred cccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 44556789999999988777665532 3579999999999999999999987432 22221111
Q ss_pred ch--hc------------------------------------------------------ccccchHHHHHHHH------
Q 044198 532 LL--TM------------------------------------------------------WFGESEANVRDVFD------ 549 (772)
Q Consensus 532 l~--~~------------------------------------------------------~vg~se~~i~~vf~------ 549 (772)
.- .. ++.+.......+|.
T Consensus 99 ~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~ 178 (604)
T 3k1j_A 99 EDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDP 178 (604)
T ss_dssp TCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCC
T ss_pred ccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEech
Confidence 00 00 00000111122221
Q ss_pred -----------------HHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC----------------
Q 044198 550 -----------------KARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS---------------- 596 (772)
Q Consensus 550 -----------------~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~---------------- 596 (772)
......+.+|||||++.+- ..+.+.|+..|+...
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~-------------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~ 245 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS-------------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVR 245 (604)
T ss_dssp C----CCCCGGGGEECCHHHHTTTSEEEETTGGGSC-------------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCB
T ss_pred hhcCCccccccccccCceeeecCCCEEEEechhhCC-------------HHHHHHHHHHHHcCcEEecccccccccccCC
Confidence 0112245699999999972 456777888887321
Q ss_pred ---CCCcEEEEeecCCC--CCCCccccCCCCcc---ccccCCCC---CHHHHHHHHHHhhccC------CCCCcccHHHH
Q 044198 597 ---AKKTVFVIGATNRP--DMIDPALLRPGRLD---QLIYIPLP---DEHSRLQIFKSCLRKS------PVSKDIDLKAI 659 (772)
Q Consensus 597 ---~~~~v~vi~aTn~~--~~ld~allrpgRf~---~~i~~~~p---~~~~r~~Il~~~~~~~------~~~~~~~~~~l 659 (772)
-..++.||+|||+. +.++++|++ ||+ ..+.++.. +.+....+++...+.. +.-.+..+..|
T Consensus 246 ~~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~L 323 (604)
T 3k1j_A 246 TEPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEI 323 (604)
T ss_dssp CSCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHH
T ss_pred CCccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHH
Confidence 12367899999987 679999998 997 45555432 3455666665443221 11123335555
Q ss_pred HHHc---CC------CCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHHHHHHhhCCCCCCHHHH
Q 044198 660 AKYT---HG------FSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHFEESMKYARRSVSDSDV 730 (772)
Q Consensus 660 a~~~---~g------~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~~~~~~ 730 (772)
++.. .| .+.+++.++++.|...|..+.. ..|+.+|+.+|+.. +..+..+.+
T Consensus 324 i~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~-------------------~~I~~edv~~A~~~-~~~i~~~~~ 383 (604)
T 3k1j_A 324 VREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGK-------------------KYVEREDVIEAVKM-AKPLEKQLA 383 (604)
T ss_dssp HHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTC-------------------SSBCHHHHHHHHHH-TCCHHHHHH
T ss_pred HHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCc-------------------ccccHHHHHHHHHh-hhhhHHHHH
Confidence 5533 44 2789999999998776643321 25999999999965 333444444
Q ss_pred HHHHHHHHHHhhccCCCChhhcccCCCCCcccCCCCC-CCC
Q 044198 731 RKYQAFANTLQQSRGFGSSAAANNVIPVSSFANGDGY-GDL 770 (772)
Q Consensus 731 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 770 (772)
+.|..-.. ....-......++.+.|+||+..+ |++
T Consensus 384 e~~l~~~~-----~~~~i~~~~~~~g~v~gla~~~~~~g~~ 419 (604)
T 3k1j_A 384 DWYIERKK-----EYQVIKTEGSEIGRVNGLAVIGEQSGIV 419 (604)
T ss_dssp HHHHHHHH-----TTCCCCCSSEETTEEEEEEEETTTEEEE
T ss_pred HHHhcccc-----ccchhhccCcccEEEEEEEEECCCccEE
Confidence 44443322 122334456678889999998776 654
No 135
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.45 E-value=1.3e-12 Score=170.79 Aligned_cols=323 Identities=15% Similarity=0.213 Sum_probs=171.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh-CCeEEEEechhhhhhcccchHHHHHHHHHHHH----------------HcCCc
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANET-GCYFLCINGPEIMSKMAGESESNLREAFNVAE----------------KNAPS 284 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l-~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~----------------~~~p~ 284 (772)
..++|||+||||||||++++.....+ +..++.++++.-.+ ...+...++..- .+...
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 36789999999999998776544433 55677788754322 233333333210 12235
Q ss_pred eEEeccccccccCCCCCchhhHHHHHHHHHHHhhc--c--------cccCceEEEEeeCCC-----CCCChhhhccCCce
Q 044198 285 IIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDG--M--------KSRAHVMVIGATNRP-----NSIDPALRRSGRFD 349 (772)
Q Consensus 285 il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~--~--------~~~~~v~vI~atn~~-----~~ld~al~r~gRf~ 349 (772)
|+||||++.......+. . ..++.|..++|. + ..-.++.+|||+|++ ..+++++.| ||.
T Consensus 1377 VlFiDDiNmp~~D~yGt--Q---~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~ 1449 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDKYGT--Q---RVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP 1449 (3245)
T ss_dssp EEEETTTTCCCCCTTSC--C---HHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC
T ss_pred EEEecccCCCCcccccc--c---cHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce
Confidence 99999999654433222 1 234555555542 1 122468899999998 479999998 887
Q ss_pred eEEEeCCCCHHHHHHHHHHHhccCC-cccccc--hhHH------------------HHHhcCCchhhHHHHHHHHHHHhh
Q 044198 350 KEIDIGVPDEVGRLEVLRIHTKNMK-LAEDVN--LETV------------------ARETHGFVGADLAALCTEGAMQCI 408 (772)
Q Consensus 350 ~~i~i~~p~~~~r~~Il~~~~~~~~-l~~~~~--l~~l------------------a~~t~g~~~~dl~~l~~~a~~~~~ 408 (772)
. +.++.|+.+....|+......+. ..+++. ...+ ++...-|+.+|+..+++-... +.
T Consensus 1450 v-i~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~-~~ 1527 (3245)
T 3vkg_A 1450 I-LLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLE-AI 1527 (3245)
T ss_dssp E-EECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHH-HH
T ss_pred E-EEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHH-hc
Confidence 6 99999999999999775543211 111110 0011 112345678888877654321 11
Q ss_pred hhhccccccccchhhHhhh------hhhhccchh-------hhhhhhhcCcccchhhhcccCC-------cccccccchH
Q 044198 409 REKMDLIDLEEDTIDAEVL------SSMYVTNEN-------LNAAVAITSPSALREIAVEVPN-------VRWADIGGLD 468 (772)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~------~~~~v~~~d-------~~~al~~~~ps~~~~~~~~~~~-------v~~~~i~g~~ 468 (772)
.... ... .+..+..... ...-++.+| +...+....+... +.....|. ..+..+ ..+
T Consensus 1528 ~~~~-~~~-~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~~~F~~~~-~~~~~~pllf~~f~~~~Y~~v-~~~ 1603 (3245)
T 3vkg_A 1528 QTMD-GCT-LEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVN-LDALKRPILYSNWLTKDYQPV-NRS 1603 (3245)
T ss_dssp HTSS-CCC-TTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHCTTSC-GGGGCSSCCCCSSCC----CC-CHH
T ss_pred Cccc-cCC-HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcch-hhhcccCcchhhhccccCccC-CHH
Confidence 1000 000 0000000000 000011111 1111111111000 00000010 012222 223
Q ss_pred HHHHHHhhhcc---------------ccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch
Q 044198 469 TVKRELQETVQ---------------YPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 533 (772)
Q Consensus 469 ~~k~~l~~~i~---------------~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~ 533 (772)
++++.+.+.+. ..+.|.-+..+.-.+|.+++||+|..||||++|++..|...++.++.+..+.-+
T Consensus 1604 ~l~~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i~k~Y 1683 (3245)
T 3vkg_A 1604 DLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNNY 1683 (3245)
T ss_dssp HHHHHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHHHHHHTTCEEECCC----C
T ss_pred HHHHHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHHHHHHhCCeeEEEeeeCCC
Confidence 34443333221 112233334444557888999999999999999999999999999988776532
Q ss_pred hcccccchHHHHHHHHHHHh-CCCeEEEEcCch
Q 044198 534 TMWFGESEANVRDVFDKARQ-SAPCVLFFDELD 565 (772)
Q Consensus 534 ~~~vg~se~~i~~vf~~a~~-~~p~ilfiDEid 565 (772)
+ ..+-...++.++.+|.. ..|.+++|+|-+
T Consensus 1684 ~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1714 (3245)
T 3vkg_A 1684 K--SSDFDDDLRMLLKRAGCKEEKICFIFDESN 1714 (3245)
T ss_dssp C--HHHHHHHHHHHHHHHHTSCCCEEEEEEGGG
T ss_pred C--HHHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 2 23446779999999854 556777787653
No 136
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=2.6e-13 Score=154.91 Aligned_cols=194 Identities=20% Similarity=0.257 Sum_probs=124.6
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHccc-CChhHHHHhCC---CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEech
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPL-RHPQIFKALGV---KPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGP 257 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l-~~~~~~~~~~~---~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~ 257 (772)
+..+.+|+++.|.+++++.|++++.... ..+..++..|. .+++++||+||||||||++|+++|++++.+++.++++
T Consensus 32 kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 3456789999999999999999887521 11112222232 2467899999999999999999999999999999997
Q ss_pred hhhhhcccchH-------HHHHHHHHHH-----HHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCc
Q 044198 258 EIMSKMAGESE-------SNLREAFNVA-----EKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAH 325 (772)
Q Consensus 258 ~~~~~~~g~~~-------~~l~~~f~~a-----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~ 325 (772)
+.......... ..+..+|..+ ....+.+|||||+|.+..... ..+..|..+++.. ...
T Consensus 112 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--------~~l~~L~~~l~~~--~~~ 181 (516)
T 1sxj_A 112 DVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------GGVGQLAQFCRKT--STP 181 (516)
T ss_dssp SCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST--------THHHHHHHHHHHC--SSC
T ss_pred CcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH--------HHHHHHHHHHHhc--CCC
Confidence 75432211000 0012223222 124578999999999875422 1245566666542 334
Q ss_pred eEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhc--cCCcccccchhHHHHHhcC
Q 044198 326 VMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTK--NMKLAEDVNLETVARETHG 390 (772)
Q Consensus 326 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~--~~~l~~~~~l~~la~~t~g 390 (772)
+++++++.....+. .++ |+...+.|+.|+.+++.+++...+. ++.+.++ .+..++..+.|
T Consensus 182 iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~G 243 (516)
T 1sxj_A 182 LILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTRG 243 (516)
T ss_dssp EEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTTT
T ss_pred EEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Confidence 55554433333343 343 4556899999999999999976653 3444443 47778877654
No 137
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.44 E-value=4.7e-14 Score=119.07 Aligned_cols=82 Identities=27% Similarity=0.400 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHH
Q 044198 633 DEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKE 712 (772)
Q Consensus 633 ~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 712 (772)
|.++|.+||+.+++++++..++|++.||+.|+||||+||.++|++|++.|+++.. ..|+++
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~-------------------~~i~~~ 62 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENR-------------------YIVLAK 62 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCC-------------------SSBCHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-------------------CCcCHH
Confidence 7899999999999999998999999999999999999999999999999987642 369999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHH
Q 044198 713 HFEESMKYARRSVSDSDVRKYQ 734 (772)
Q Consensus 713 ~~~~al~~~~~s~~~~~~~~y~ 734 (772)
||..|+++++||++ +++++|+
T Consensus 63 df~~Al~~~~ps~~-~~l~~y~ 83 (83)
T 3aji_B 63 DFEKAYKTVIKKDE-QEHEFYK 83 (83)
T ss_dssp HHHHHHHHHCC-----------
T ss_pred HHHHHHHHHccCch-HHHHhcC
Confidence 99999999999999 8888885
No 138
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.44 E-value=2.4e-12 Score=140.88 Aligned_cols=200 Identities=19% Similarity=0.250 Sum_probs=132.5
Q ss_pred CccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCeEEEEechhh
Q 044198 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET------GCYFLCINGPEI 259 (772)
Q Consensus 186 ~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l------~~~~~~v~~~~~ 259 (772)
...+++.|.+++++.|.+++...+.. ..+..++|+||+|||||+|++++++.+ +..++.++|...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 34478999999999998877542211 345689999999999999999999988 788999997643
Q ss_pred hh------h----------cccc-hHHHHHHHHHHHHHcC-CceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc
Q 044198 260 MS------K----------MAGE-SESNLREAFNVAEKNA-PSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK 321 (772)
Q Consensus 260 ~~------~----------~~g~-~~~~l~~~f~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~ 321 (772)
.. . ..+. .......+++...... |.+|+|||++.+..... ..++..|...++..
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-------~~~l~~l~~~~~~~- 159 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-------DDILYKLSRINSEV- 159 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-------STHHHHHHHHHHSC-
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-------CHHHHHHhhchhhc-
Confidence 21 1 0111 2233444555444433 88999999999875421 12345566666544
Q ss_pred ccCceEEEEeeCCC---CCCChhhhccCCce-eEEEeCCCCHHHHHHHHHHHhcc----CCcccccchhHHHHHhc---C
Q 044198 322 SRAHVMVIGATNRP---NSIDPALRRSGRFD-KEIDIGVPDEVGRLEVLRIHTKN----MKLAEDVNLETVARETH---G 390 (772)
Q Consensus 322 ~~~~v~vI~atn~~---~~ld~al~r~gRf~-~~i~i~~p~~~~r~~Il~~~~~~----~~l~~~~~l~~la~~t~---g 390 (772)
...++.+|++++.+ ..+++.+.+ ||. +.+.+++++.++..++++..+.. ..+. +..++.++..+. |
T Consensus 160 ~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~G 236 (386)
T 2qby_A 160 NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP-DNVIKLCAALAAREHG 236 (386)
T ss_dssp CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC-HHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHHhcC
Confidence 34578888899876 467888887 664 58999999999999999876542 1222 223555666665 5
Q ss_pred CchhhHHHHHHHHHHH
Q 044198 391 FVGADLAALCTEGAMQ 406 (772)
Q Consensus 391 ~~~~dl~~l~~~a~~~ 406 (772)
... .+..++..+...
T Consensus 237 ~~r-~~~~ll~~a~~~ 251 (386)
T 2qby_A 237 DAR-RALDLLRVSGEI 251 (386)
T ss_dssp CHH-HHHHHHHHHHHH
T ss_pred CHH-HHHHHHHHHHHH
Confidence 433 344466665443
No 139
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.43 E-value=2.6e-12 Score=139.14 Aligned_cols=159 Identities=23% Similarity=0.335 Sum_probs=100.1
Q ss_pred CCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEE----Eechhh
Q 044198 184 DDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLC----INGPEI 259 (772)
Q Consensus 184 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~----v~~~~~ 259 (772)
++.+|+++.|.++.++.+......+ ...++||+||||||||++|+++++.++..... ++|...
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~-------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCG-------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCchhccChHHHHHHHHHHhhCC-------------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 5678999999998766543333221 13469999999999999999999988631110 111110
Q ss_pred hh---------------------hcccchHHHH------HHHHHHH---------HHcCCceEEeccccccccCCCCCch
Q 044198 260 MS---------------------KMAGESESNL------REAFNVA---------EKNAPSIIFIDEIDSIAPKREKTHG 303 (772)
Q Consensus 260 ~~---------------------~~~g~~~~~l------~~~f~~a---------~~~~p~il~iDEid~l~~~~~~~~~ 303 (772)
.. ...+.....+ ...+... ....+.++||||++.+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~------- 158 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED------- 158 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH-------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH-------
Confidence 00 0001111111 1112111 112357999999998743
Q ss_pred hhHHHHHHHHHHHhhccc-----------ccCceEEEEeeCCCC-CCChhhhccCCceeEEEeCCC-CHHHHHHHHHH
Q 044198 304 EVEKRIVSQLLTLMDGMK-----------SRAHVMVIGATNRPN-SIDPALRRSGRFDKEIDIGVP-DEVGRLEVLRI 368 (772)
Q Consensus 304 ~~~~~v~~~L~~lld~~~-----------~~~~v~vI~atn~~~-~ld~al~r~gRf~~~i~i~~p-~~~~r~~Il~~ 368 (772)
...+.|+..++... ...++.+|+++|+.+ .+++++.+ ||+..+.++.| +.+.+.+|++.
T Consensus 159 ----~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 159 ----HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp ----HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 23456666665411 123789999999855 89999999 99999999999 67777788865
No 140
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.43 E-value=1.1e-13 Score=117.73 Aligned_cols=86 Identities=20% Similarity=0.346 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHH
Q 044198 633 DEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKE 712 (772)
Q Consensus 633 ~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 712 (772)
|.++|.+||+.+++++++..++|++.||+.|+||||+||.++|++|++.|+++.. ..|+.+
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~-------------------~~i~~~ 62 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR-------------------KVATEK 62 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC-------------------SSBCHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc-------------------ccCCHH
Confidence 5689999999999999999999999999999999999999999999999998843 269999
Q ss_pred HHHHHHhhCCCCCCH-HHHHHHHHHH
Q 044198 713 HFEESMKYARRSVSD-SDVRKYQAFA 737 (772)
Q Consensus 713 ~~~~al~~~~~s~~~-~~~~~y~~~~ 737 (772)
||+.|++++.++... .....|..|.
T Consensus 63 df~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 63 DFLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp HHHHHHHHHTC---------------
T ss_pred HHHHHHHHHhcCcccccchhHHhccC
Confidence 999999999998765 4578888774
No 141
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.42 E-value=1.6e-13 Score=142.87 Aligned_cols=194 Identities=20% Similarity=0.233 Sum_probs=115.1
Q ss_pred ccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhC---CcEEEEecccchhc-
Q 044198 460 RWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPELLTM- 535 (772)
Q Consensus 460 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~---~~~i~v~~~~l~~~- 535 (772)
+|+++.|.+...+.+.+.+.... ....++||+||||||||++|++++..+. .+|+.++++++...
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 56778888777776665544311 2346799999999999999999999874 68999998876321
Q ss_pred ----ccccchH-------HHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC--------
Q 044198 536 ----WFGESEA-------NVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-------- 596 (772)
Q Consensus 536 ----~vg~se~-------~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-------- 596 (772)
..|.... .....|..+ ..++|||||+|.+. ..+.+.|+..|+...
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~-------------~~~q~~Ll~~l~~~~~~~~g~~~ 136 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP-------------MMVQEKLLRVIEYGELERVGGSQ 136 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSC-------------HHHHHHHHHHHHHCEECCCCC--
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcC-------------HHHHHHHHHHHHhCCeecCCCcc
Confidence 1121100 011223333 34699999999883 345677888877421
Q ss_pred -CCCcEEEEeecCCC-------CCCCccccCCCCcc-ccccCCCCCH--HHHHHHHHHhhcc----CCCCC--ccc---H
Q 044198 597 -AKKTVFVIGATNRP-------DMIDPALLRPGRLD-QLIYIPLPDE--HSRLQIFKSCLRK----SPVSK--DID---L 656 (772)
Q Consensus 597 -~~~~v~vi~aTn~~-------~~ld~allrpgRf~-~~i~~~~p~~--~~r~~Il~~~~~~----~~~~~--~~~---~ 656 (772)
...++.+|+|||.+ ..+++++.+ ||+ ..+.+|+... ++...+++.++++ ..... .++ +
T Consensus 137 ~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~ 214 (265)
T 2bjv_A 137 PLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERAR 214 (265)
T ss_dssp CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHH
T ss_pred cccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHH
Confidence 12357899999985 246778887 886 3456665543 4455555544432 22211 233 3
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH
Q 044198 657 KAIAKYTHGFSGADITEICQRACKCA 682 (772)
Q Consensus 657 ~~la~~~~g~sg~di~~l~~~a~~~a 682 (772)
..|.+..-..+.++++++++.+...+
T Consensus 215 ~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 215 ETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 44444332234578888888876543
No 142
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.42 E-value=6.1e-12 Score=127.92 Aligned_cols=187 Identities=20% Similarity=0.287 Sum_probs=129.0
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY------------ 250 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~------------ 250 (772)
..+..++++.|.++.++.|.+.+... ..+..++|+||||||||++++.+++.+...
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 34556788999999999998887641 224579999999999999999999887431
Q ss_pred ------------EEEEechhhhhhcccchHHHHHHHHHHHH----HcCCceEEeccccccccCCCCCchhhHHHHHHHHH
Q 044198 251 ------------FLCINGPEIMSKMAGESESNLREAFNVAE----KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLL 314 (772)
Q Consensus 251 ------------~~~v~~~~~~~~~~g~~~~~l~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~ 314 (772)
++.+++.. ......++.+++... ...+.+|+|||+|.+.+ ...+.|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-----------~~~~~l~ 147 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALL 147 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-----------HHHHHHH
T ss_pred HHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-----------HHHHHHH
Confidence 12222111 112234455554432 23468999999998732 2345566
Q ss_pred HHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCch
Q 044198 315 TLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVG 393 (772)
Q Consensus 315 ~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~ 393 (772)
..++.. ..++.+|++|+.+..+++++.+ |+ ..+++++++.++..++++.++...... +...++.+++.+.| .+
T Consensus 148 ~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~ 221 (250)
T 1njg_A 148 KTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SL 221 (250)
T ss_dssp HHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CH
T ss_pred HHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CH
Confidence 666543 3468888899988889999887 65 579999999999999998776543221 22346788888877 56
Q ss_pred hhHHHHHHHHH
Q 044198 394 ADLAALCTEGA 404 (772)
Q Consensus 394 ~dl~~l~~~a~ 404 (772)
..+..++..+.
T Consensus 222 ~~~~~~~~~~~ 232 (250)
T 1njg_A 222 RDALSLTDQAI 232 (250)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67777776654
No 143
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.41 E-value=6.9e-12 Score=137.69 Aligned_cols=200 Identities=19% Similarity=0.159 Sum_probs=132.8
Q ss_pred CccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCc--eEEEECCCCCcHHHHHHHHHHHh----CCeEEEEechhh
Q 044198 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPK--GILLHGPPGTGKTLLARAIANET----GCYFLCINGPEI 259 (772)
Q Consensus 186 ~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~--~vLL~GppGtGKT~Lar~la~~l----~~~~~~v~~~~~ 259 (772)
...+++.|.+++++.|.+++...... ..+. +++|+||||||||++++++++.+ +..++.++|...
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 34477999999999998887642211 2234 89999999999999999999998 567888987543
Q ss_pred hh------h----c------ccc-hHHHHHHHHHHHHH-cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc
Q 044198 260 MS------K----M------AGE-SESNLREAFNVAEK-NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK 321 (772)
Q Consensus 260 ~~------~----~------~g~-~~~~l~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~ 321 (772)
.. . . .+. .......+...... ..|.+|+|||++.+. ......|..+++...
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-----------~~~~~~L~~~~~~~~ 153 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-----------PDILSTFIRLGQEAD 153 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-----------HHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-----------hHHHHHHHHHHHhCC
Confidence 21 0 0 111 12222223333322 457899999999871 234566777765543
Q ss_pred c--cCceEEEEeeCCC---CCCChhhhccCCcee-EEEeCCCCHHHHHHHHHHHhccC---CcccccchhHHHHHhcCC-
Q 044198 322 S--RAHVMVIGATNRP---NSIDPALRRSGRFDK-EIDIGVPDEVGRLEVLRIHTKNM---KLAEDVNLETVARETHGF- 391 (772)
Q Consensus 322 ~--~~~v~vI~atn~~---~~ld~al~r~gRf~~-~i~i~~p~~~~r~~Il~~~~~~~---~l~~~~~l~~la~~t~g~- 391 (772)
. ..++.+|+++|.+ +.+++.+.+ ||.. .+.+++++.++..++++..+... ...++..++.++..+.+.
T Consensus 154 ~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (389)
T 1fnn_A 154 KLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQT 231 (389)
T ss_dssp HHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSS
T ss_pred CCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcc
Confidence 2 2478888999887 678888877 7764 79999999999999998776431 112233467778887422
Q ss_pred -------chhhHHHHHHHHHHHh
Q 044198 392 -------VGADLAALCTEGAMQC 407 (772)
Q Consensus 392 -------~~~dl~~l~~~a~~~~ 407 (772)
....+..++..+...+
T Consensus 232 ~~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 232 PLDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp TTCTTSCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHHHHHHHHHH
Confidence 2334556666665444
No 144
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.39 E-value=2.6e-13 Score=114.69 Aligned_cols=78 Identities=31% Similarity=0.498 Sum_probs=71.6
Q ss_pred cCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccc
Q 044198 628 YIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVA 707 (772)
Q Consensus 628 ~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (772)
.-.+||.++|.+||+.+++++++..++|++.||+.|+||||+||.++|++|++.|+++.. .
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~-------------------~ 67 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR-------------------V 67 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTC-------------------S
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcC-------------------C
Confidence 456899999999999999999999999999999999999999999999999999998752 3
Q ss_pred cccHHHHHHHHhhCCCC
Q 044198 708 EIKKEHFEESMKYARRS 724 (772)
Q Consensus 708 ~i~~~~~~~al~~~~~s 724 (772)
.|+++||+.|+++++|.
T Consensus 68 ~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 68 HVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp EECHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHccC
Confidence 69999999999998774
No 145
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.39 E-value=9.1e-12 Score=162.43 Aligned_cols=128 Identities=19% Similarity=0.274 Sum_probs=94.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCc
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTH 302 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~ 302 (772)
..|+++.||+|||||++++++|+.+|.+++.+||.+-+. ...+..+|..+... .+++++||++.+.+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~~~------ 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRLDE------ 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCH------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhcCh------
Confidence 568999999999999999999999999999999976543 34567777766554 37999999987643
Q ss_pred hhhHHHHHHHHHHHhhcc--------------cccCceEEEEeeCCC----CCCChhhhccCCceeEEEeCCCCHHHHHH
Q 044198 303 GEVEKRIVSQLLTLMDGM--------------KSRAHVMVIGATNRP----NSIDPALRRSGRFDKEIDIGVPDEVGRLE 364 (772)
Q Consensus 303 ~~~~~~v~~~L~~lld~~--------------~~~~~v~vI~atn~~----~~ld~al~r~gRf~~~i~i~~p~~~~r~~ 364 (772)
++...+..++..+.+.+ .-..+..+++|+|+. ..|++++++ || +.+.+..||.+...+
T Consensus 712 -evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~e 787 (2695)
T 4akg_A 712 -KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAE 787 (2695)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHH
Confidence 23333333333332221 123457788999964 578999988 77 569999999998888
Q ss_pred HHH
Q 044198 365 VLR 367 (772)
Q Consensus 365 Il~ 367 (772)
|+-
T Consensus 788 i~l 790 (2695)
T 4akg_A 788 MIL 790 (2695)
T ss_dssp HHH
T ss_pred HHH
Confidence 854
No 146
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.39 E-value=3.3e-13 Score=143.27 Aligned_cols=190 Identities=20% Similarity=0.262 Sum_probs=117.1
Q ss_pred cccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhc----
Q 044198 463 DIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM---- 535 (772)
Q Consensus 463 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~---- 535 (772)
++.|.....+.+.+.+... .....++||+||||||||++|++++..+ +.+|+.++++.+...
T Consensus 3 ~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 4566666666555544331 1335679999999999999999999975 578999998775321
Q ss_pred -cccc--------chHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC---------C
Q 044198 536 -WFGE--------SEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS---------A 597 (772)
Q Consensus 536 -~vg~--------se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~---------~ 597 (772)
+.|. .. .....|..|.. ++||||||+.+. ..+...|+..|+... .
T Consensus 72 ~lfg~~~g~~tg~~~-~~~g~~~~a~~---g~L~LDEi~~l~-------------~~~q~~Ll~~l~~~~~~~~g~~~~~ 134 (304)
T 1ojl_A 72 ELFGHEKGAFTGADK-RREGRFVEADG---GTLFLDEIGDIS-------------PLMQVRLLRAIQEREVQRVGSNQTI 134 (304)
T ss_dssp HHTCCCSSCCC---C-CCCCHHHHHTT---SEEEEESCTTCC-------------HHHHHHHHHHHHSSBCCBTTBCCCC
T ss_pred HhcCccccccCchhh-hhcCHHHhcCC---CEEEEeccccCC-------------HHHHHHHHHHHhcCEeeecCCcccc
Confidence 1221 11 12345655543 599999999883 346777888887642 1
Q ss_pred CCcEEEEeecCCC-------CCCCccccCCCCcc-ccccCCCCC--HHHHHHHHHHhhcc----CCC---C-CcccHHHH
Q 044198 598 KKTVFVIGATNRP-------DMIDPALLRPGRLD-QLIYIPLPD--EHSRLQIFKSCLRK----SPV---S-KDIDLKAI 659 (772)
Q Consensus 598 ~~~v~vi~aTn~~-------~~ld~allrpgRf~-~~i~~~~p~--~~~r~~Il~~~~~~----~~~---~-~~~~~~~l 659 (772)
..++.||+|||.+ ..+++.+.. ||. ..|.+|+.. .++...+++.++++ ... . ++..+..|
T Consensus 135 ~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L 212 (304)
T 1ojl_A 135 SVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLL 212 (304)
T ss_dssp BCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHH
T ss_pred cCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHH
Confidence 2458899999986 234555665 665 224455544 34445566655432 211 1 22334555
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHH
Q 044198 660 AKYTHGFSGADITEICQRACKCA 682 (772)
Q Consensus 660 a~~~~g~sg~di~~l~~~a~~~a 682 (772)
....-.-+.+++.+++..|...+
T Consensus 213 ~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 213 IHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp HHCCCSSHHHHHHHHHHHHHHHC
T ss_pred HcCCCCCCHHHHHHHHHHHHHhC
Confidence 55442235678888888876543
No 147
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.39 E-value=1.5e-11 Score=132.28 Aligned_cols=195 Identities=22% Similarity=0.325 Sum_probs=131.4
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhh
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSK 262 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~ 262 (772)
+..-+++++.|.+..++.+...+..... -+ .++.+++|+||||||||||++++|+.++.++...+++.+..
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~- 89 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKM-------RG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK- 89 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHH-------HT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHh-------cC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-
Confidence 3444677888888888888766653210 01 34567999999999999999999999998887777654321
Q ss_pred cccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc----------------ccCce
Q 044198 263 MAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK----------------SRAHV 326 (772)
Q Consensus 263 ~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~----------------~~~~v 326 (772)
...+..++.. .....|+|+||++.+.+. +.+.|+..++... ....+
T Consensus 90 -----~~~l~~~~~~--~~~~~v~~iDE~~~l~~~-----------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 90 -----QGDMAAILTS--LERGDVLFIDEIHRLNKA-----------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp -----HHHHHHHHHH--CCTTCEEEEETGGGCCHH-----------HHHHHHHHHHTSCCCC---------------CCC
T ss_pred -----HHHHHHHHHH--ccCCCEEEEcchhhcCHH-----------HHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 1223333321 134579999999988531 1233333333211 01246
Q ss_pred EEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCchhhHHHHHHHHHH
Q 044198 327 MVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVGADLAALCTEGAM 405 (772)
Q Consensus 327 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 405 (772)
.++++++++..|++.+++ ||...+.+++|+.+++.+|++...+..... ++..+..++..+.|.. +++..+++.+..
T Consensus 152 ~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~-R~a~~ll~~~~~ 228 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTP-RIAIRLTKRVRD 228 (334)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCH-HHHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCh-HHHHHHHHHHHH
Confidence 788899999999999998 998889999999999999998776543332 2224677888777754 566666666544
Q ss_pred Hh
Q 044198 406 QC 407 (772)
Q Consensus 406 ~~ 407 (772)
.+
T Consensus 229 ~a 230 (334)
T 1in4_A 229 ML 230 (334)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 148
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.37 E-value=5.3e-13 Score=111.08 Aligned_cols=75 Identities=33% Similarity=0.567 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccc
Q 044198 630 PLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEI 709 (772)
Q Consensus 630 ~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i 709 (772)
|+||.++|.+||+.+++++++..++|++.||+.|+||||+||.++|++|++.|+++.. ..|
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~-------------------~~i 61 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR-------------------VHV 61 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-------------------SEE
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-------------------CCC
Confidence 7899999999999999999998999999999999999999999999999999998742 369
Q ss_pred cHHHHHHHHhhCCC
Q 044198 710 KKEHFEESMKYARR 723 (772)
Q Consensus 710 ~~~~~~~al~~~~~ 723 (772)
+.+||+.|++++..
T Consensus 62 ~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 62 TQEDFEMAVAKVMQ 75 (78)
T ss_dssp CHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998744
No 149
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.34 E-value=8.7e-12 Score=135.07 Aligned_cols=174 Identities=21% Similarity=0.237 Sum_probs=121.1
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC------CeEEEEe
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG------CYFLCIN 255 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~------~~~~~v~ 255 (772)
+..+.+|+++.|.++.++.+..++... ...++||+||||||||++++++++.++ ..++.++
T Consensus 30 k~~p~~~~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 96 (353)
T 1sxj_D 30 KYRPKNLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 96 (353)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred hcCCCCHHHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc
Confidence 345667899999999999888777541 123599999999999999999999864 3567777
Q ss_pred chhhhhhcccchHHHHHHHHHHHHH----------------cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhc
Q 044198 256 GPEIMSKMAGESESNLREAFNVAEK----------------NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDG 319 (772)
Q Consensus 256 ~~~~~~~~~g~~~~~l~~~f~~a~~----------------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~ 319 (772)
+.+..+ ...++..+..... ..+.++||||+|.+.+. ..+.|+..++.
T Consensus 97 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-----------~~~~Ll~~le~ 159 (353)
T 1sxj_D 97 ASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-----------AQSALRRTMET 159 (353)
T ss_dssp SSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-----------HHHHHHHHHHH
T ss_pred cccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-----------HHHHHHHHHHh
Confidence 655311 1122222221111 23459999999988532 23567777765
Q ss_pred ccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhcc--CCcccccchhHHHHHhcCC
Q 044198 320 MKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKN--MKLAEDVNLETVARETHGF 391 (772)
Q Consensus 320 ~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~--~~l~~~~~l~~la~~t~g~ 391 (772)
... ...+|.++|.+..+++++++ |+. .+.+++|+.++...+++..+.. +.+.+ ..++.++..+.|.
T Consensus 160 ~~~--~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~-~~l~~l~~~~~G~ 227 (353)
T 1sxj_D 160 YSG--VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDD-GVLERILDISAGD 227 (353)
T ss_dssp TTT--TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCH-HHHHHHHHHTSSC
T ss_pred cCC--CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHcCCC
Confidence 433 45666788999999999998 886 6899999999999999877643 33333 3467777777764
No 150
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.34 E-value=7.5e-12 Score=135.17 Aligned_cols=172 Identities=20% Similarity=0.266 Sum_probs=120.4
Q ss_pred CCcccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCC-----cEEEEeccc
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQA-----NFISIKGPE 531 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~-----~~i~v~~~~ 531 (772)
....|+++.|++.+.+.|...+.. | ...+++|+||||||||++|+++|+.+.. .++.++.++
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~-----------g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDE-----------G--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHT-----------T--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc-----------C--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 344678889999888888766542 2 1224999999999999999999998632 366677665
Q ss_pred chhcccccchHHHHHHHHHHHh------CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEe
Q 044198 532 LLTMWFGESEANVRDVFDKARQ------SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIG 605 (772)
Q Consensus 532 l~~~~vg~se~~i~~vf~~a~~------~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 605 (772)
.. | ...+++......+ ..+.|++|||+|.+. ....+.|+..|+... ....+|+
T Consensus 87 ~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-------------~~~~~~L~~~le~~~--~~~~~il 145 (340)
T 1sxj_C 87 DR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-------------NAAQNALRRVIERYT--KNTRFCV 145 (340)
T ss_dssp CC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-------------HHHHHHHHHHHHHTT--TTEEEEE
T ss_pred cc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-------------HHHHHHHHHHHhcCC--CCeEEEE
Confidence 31 1 2334444333221 236899999999883 345677888888643 3566778
Q ss_pred ecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCC-CcccHHHHHHHcCC
Q 044198 606 ATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVS-KDIDLKAIAKYTHG 665 (772)
Q Consensus 606 aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~~~~~la~~~~g 665 (772)
+||.++.+.+++.+ |+. .+.|++++.++..+++...+++..+. .+.....+++.+.|
T Consensus 146 ~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 146 LANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred EecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 88999999999998 987 78899999999999988887543332 23345566665544
No 151
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.34 E-value=5.6e-12 Score=134.43 Aligned_cols=178 Identities=20% Similarity=0.226 Sum_probs=121.1
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEec
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET-----GCYFLCING 256 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l-----~~~~~~v~~ 256 (772)
+..+..|+++.|.++.++.++.++.. ....++||+||||||||++++++++.+ +.+++.+++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 34566789999999999988876643 112349999999999999999999986 335778887
Q ss_pred hhhhhhcccchHHHHHHHHHH-HH-HcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCC
Q 044198 257 PEIMSKMAGESESNLREAFNV-AE-KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNR 334 (772)
Q Consensus 257 ~~~~~~~~g~~~~~l~~~f~~-a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~ 334 (772)
++..+ .......+...... +. ...+.+++|||+|.+.. ...+.|+..++.. ..++.+|++||.
T Consensus 77 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~--~~~~~~i~~~~~ 141 (319)
T 2chq_A 77 SDERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEMY--SKSCRFILSCNY 141 (319)
T ss_dssp TSTTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-----------HHHHTTGGGTSSS--SSSEEEEEEESC
T ss_pred ccccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-----------HHHHHHHHHHHhc--CCCCeEEEEeCC
Confidence 65422 11122222222110 00 13467999999998743 1234455555542 346788889999
Q ss_pred CCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcC
Q 044198 335 PNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHG 390 (772)
Q Consensus 335 ~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g 390 (772)
+..+.+++++ |+. .+.+++|+.++..+++...+....+. ++..++.++..+.|
T Consensus 142 ~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 195 (319)
T 2chq_A 142 VSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195 (319)
T ss_dssp GGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT
T ss_pred hhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999999998 876 69999999999999998776543332 22245666665544
No 152
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.34 E-value=1.9e-11 Score=130.52 Aligned_cols=175 Identities=18% Similarity=0.197 Sum_probs=124.2
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEech
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET-----GCYFLCINGP 257 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l-----~~~~~~v~~~ 257 (772)
..+..++++.|.++.++.+..++... . ..+++|+||||+|||++++++++.+ +..++.+++.
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~~------------~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKDG------------N-MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 81 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHSC------------C-CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHcC------------C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence 45567889999999999998887541 1 2249999999999999999999986 3346777765
Q ss_pred hhhhhcccchHHHHHHHHHHHH-------HcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEE
Q 044198 258 EIMSKMAGESESNLREAFNVAE-------KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIG 330 (772)
Q Consensus 258 ~~~~~~~g~~~~~l~~~f~~a~-------~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~ 330 (772)
+.. ....++.+++... ...+.+++|||+|.+... ..+.|+..++.. ..++.+|.
T Consensus 82 ~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~~--~~~~~~il 142 (323)
T 1sxj_B 82 DDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-----------AQQALRRTMELY--SNSTRFAF 142 (323)
T ss_dssp SCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-----------HHHTTHHHHHHT--TTTEEEEE
T ss_pred ccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-----------HHHHHHHHHhcc--CCCceEEE
Confidence 421 1334555555444 223779999999987531 234566666543 24577788
Q ss_pred eeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhcc--CCcccccchhHHHHHhcCCch
Q 044198 331 ATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKN--MKLAEDVNLETVARETHGFVG 393 (772)
Q Consensus 331 atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~--~~l~~~~~l~~la~~t~g~~~ 393 (772)
+||.+..+.+++++ |+. .+.+++|+.++..++++..... ..+.+ ..++.++..+.|...
T Consensus 143 ~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~~~G~~r 203 (323)
T 1sxj_B 143 ACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTN-DGLEAIIFTAEGDMR 203 (323)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCH-HHHHHHHHHHTTCHH
T ss_pred EeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCCCHH
Confidence 88999999999988 776 7999999999999999876543 23322 246677777765443
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.34 E-value=3.5e-11 Score=128.70 Aligned_cols=178 Identities=21% Similarity=0.248 Sum_probs=121.6
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CeEEEEech
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG-----CYFLCINGP 257 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~-----~~~~~v~~~ 257 (772)
..+.+|+++.|.++.++.+..++... ...++||+||||||||++++++++.+. ..++.+++.
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~ 85 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKTG-------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS 85 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHHT-------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc
Confidence 45667889999999999998887641 233599999999999999999999863 236777775
Q ss_pred hhhhhcccchHHHHHHHHHH-HH-HcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCC
Q 044198 258 EIMSKMAGESESNLREAFNV-AE-KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP 335 (772)
Q Consensus 258 ~~~~~~~g~~~~~l~~~f~~-a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~ 335 (772)
+..+. ......+...... +. ...+.+++|||+|.+.+ ...+.|+..++.. ...+.+|+++|.+
T Consensus 86 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~--~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 86 DERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-----------DAQQALRRTMEMF--SSNVRFILSCNYS 150 (327)
T ss_dssp CHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHT--TTTEEEEEEESCG
T ss_pred ccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH-----------HHHHHHHHHHHhc--CCCCeEEEEeCCc
Confidence 53221 1111112211110 00 13467999999998743 2245666777653 3457788889999
Q ss_pred CCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCC
Q 044198 336 NSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGF 391 (772)
Q Consensus 336 ~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 391 (772)
..+.+++++ |+. .+.+++|+.++..++++..+....+. ++..++.++..+.|.
T Consensus 151 ~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~ 204 (327)
T 1iqp_A 151 SKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGD 204 (327)
T ss_dssp GGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTC
T ss_pred cccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCC
Confidence 899999988 876 68999999999999998776543321 222466677766553
No 154
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.33 E-value=2.1e-11 Score=131.20 Aligned_cols=158 Identities=18% Similarity=0.252 Sum_probs=114.1
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhCCc------------------------EEEEecccchhcccccchHHHHHHHHH
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQAN------------------------FISIKGPELLTMWFGESEANVRDVFDK 550 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~~~------------------------~i~v~~~~l~~~~vg~se~~i~~vf~~ 550 (772)
.+..+||+||||+|||++|+++|..+... ++.+.+.+- +. .-+-..++++.+.
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~--~~~i~~ir~l~~~ 99 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KN--TLGVDAVREVTEK 99 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CS--SBCHHHHHHHHHH
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CC--CCCHHHHHHHHHH
Confidence 35569999999999999999999987532 333333210 00 1123457788877
Q ss_pred HHhC----CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCcccc
Q 044198 551 ARQS----APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQL 626 (772)
Q Consensus 551 a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~ 626 (772)
+... .+.|++|||+|.+. ....|.||..|+. +..++++|.+||.++.+.|++.+ |+. .
T Consensus 100 ~~~~~~~~~~kvviIdead~l~-------------~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc~-~ 161 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLT-------------DAAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RCR-L 161 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBC-------------HHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TSE-E
T ss_pred HhhccccCCcEEEEECchhhcC-------------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cce-e
Confidence 6532 36899999999982 4467889999985 44578888889999999999998 986 7
Q ss_pred ccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHH
Q 044198 627 IYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRA 678 (772)
Q Consensus 627 i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a 678 (772)
+.|++|+.++..++++... .+ ++..+..+++.+.| +.+.+.+++..+
T Consensus 162 ~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~~~ 208 (334)
T 1a5t_A 162 HYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQGD 208 (334)
T ss_dssp EECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTSSH
T ss_pred eeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhccc
Confidence 9999999999999998775 22 34456777877765 555555555443
No 155
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.31 E-value=1.1e-11 Score=139.44 Aligned_cols=152 Identities=18% Similarity=0.213 Sum_probs=93.6
Q ss_pred cccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CeEEEEech-----hhhhh
Q 044198 190 DVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG--CYFLCINGP-----EIMSK 262 (772)
Q Consensus 190 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~--~~~~~v~~~-----~~~~~ 262 (772)
.+.|.++.++.+...+.. ..++||+||||||||++|+++|..++ .++..+++. ++.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 366777777666544432 46899999999999999999999884 355555553 22222
Q ss_pred cccchHHHHHHHHHHHHHc---CCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc--------ccCceEEEEe
Q 044198 263 MAGESESNLREAFNVAEKN---APSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK--------SRAHVMVIGA 331 (772)
Q Consensus 263 ~~g~~~~~l~~~f~~a~~~---~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~--------~~~~v~vI~a 331 (772)
+.+..... ...|..+... .++|+|||||+.+. ..+.+.|+..|+... .....++|+|
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~-----------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~A 155 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG-----------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAA 155 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGCC-----------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhc-----------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhc
Confidence 22111111 1122211111 36799999997653 245577788775321 1112245777
Q ss_pred eCCCC---CCChhhhccCCceeEEEeCCCCH-HHHHHHHHHHh
Q 044198 332 TNRPN---SIDPALRRSGRFDKEIDIGVPDE-VGRLEVLRIHT 370 (772)
Q Consensus 332 tn~~~---~ld~al~r~gRf~~~i~i~~p~~-~~r~~Il~~~~ 370 (772)
||+.. ...+++.+ ||...+.++.|+. +++.+|++.+.
T Consensus 156 TN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 156 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp ESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred cccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhccc
Confidence 77642 24458887 9999999999987 67888887553
No 156
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.29 E-value=2e-11 Score=126.93 Aligned_cols=149 Identities=19% Similarity=0.239 Sum_probs=91.9
Q ss_pred CccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CeEEEEechhhhhh
Q 044198 186 VGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG---CYFLCINGPEIMSK 262 (772)
Q Consensus 186 ~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~---~~~~~v~~~~~~~~ 262 (772)
.+|+++.|.+..+..+.+.+.... ..+.++||+||||||||++|++++..+. .+++.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 467788999999988877765422 2246899999999999999999999874 57999999775321
Q ss_pred c-----ccchHHH-------HHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc---------
Q 044198 263 M-----AGESESN-------LREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK--------- 321 (772)
Q Consensus 263 ~-----~g~~~~~-------l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~--------- 321 (772)
. .|..... ....|.. ....+|||||++.+.+ .....|+..++...
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM-----------MVQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCH-----------HHHHHHHHHHHHCEECCCCC--C
T ss_pred HHHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCH-----------HHHHHHHHHHHhCCeecCCCccc
Confidence 1 1110000 0011221 2356999999998853 23455666666421
Q ss_pred ccCceEEEEeeCCC-------CCCChhhhccCCceeEEEeCCCCHHHH
Q 044198 322 SRAHVMVIGATNRP-------NSIDPALRRSGRFDKEIDIGVPDEVGR 362 (772)
Q Consensus 322 ~~~~v~vI~atn~~-------~~ld~al~r~gRf~~~i~i~~p~~~~r 362 (772)
...++.+|++||++ ..+++++.+ ||.. +.+..|...+|
T Consensus 138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R 182 (265)
T 2bjv_A 138 LQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRER 182 (265)
T ss_dssp EECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGC
T ss_pred ccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhh
Confidence 12467899999985 357788887 8853 34444444443
No 157
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.28 E-value=6.4e-13 Score=111.61 Aligned_cols=81 Identities=23% Similarity=0.272 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcccccccccHHHH
Q 044198 635 HSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQRACKCAIREEIEKDIKKGQRENPEGAAGEVAEIKKEHF 714 (772)
Q Consensus 635 ~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 714 (772)
++|.+||+.+++++++..++|++.||+.|+||||+||.++|++|++.|+++.. ..|+.+||
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~-------------------~~i~~~df 61 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR-------------------YVILQSDL 61 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC-------------------SEECHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-------------------CCcCHHHH
Confidence 47999999999999998899999999999999999999999999999998742 26999999
Q ss_pred HHHHhhC-CCCCCHHHHHHHH
Q 044198 715 EESMKYA-RRSVSDSDVRKYQ 734 (772)
Q Consensus 715 ~~al~~~-~~s~~~~~~~~y~ 734 (772)
+.|+.++ .|+.++++++.|.
T Consensus 62 ~~Al~~v~~~~~~~~~~~~y~ 82 (82)
T 2dzn_B 62 EEAYATQVKTDNTVDKFDFYK 82 (82)
T ss_dssp HHHHHTTCC------------
T ss_pred HHHHHHHHcCcCChHHHHhhC
Confidence 9999998 5888888988884
No 158
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.26 E-value=6.1e-12 Score=118.21 Aligned_cols=91 Identities=16% Similarity=0.249 Sum_probs=69.9
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhcc
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQR 571 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r 571 (772)
...++||+||||||||++|++++... +.+|+ ++++.+... ......|..+.. ++|||||+|.+.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a~~---g~l~ldei~~l~--- 89 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALAQG---GTLVLSHPEHLT--- 89 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHHTT---SCEEEECGGGSC---
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHcCC---cEEEEcChHHCC---
Confidence 35679999999999999999999987 67899 999876543 345566776644 599999999983
Q ss_pred CCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCC
Q 044198 572 GSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRP 610 (772)
Q Consensus 572 ~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 610 (772)
......|+..|... ..++.+|+|||.+
T Consensus 90 ----------~~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 90 ----------REQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp ----------HHHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred ----------HHHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 44567788888543 3356788999874
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.25 E-value=1e-10 Score=127.56 Aligned_cols=186 Identities=20% Similarity=0.278 Sum_probs=126.3
Q ss_pred CCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe------------
Q 044198 183 LDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY------------ 250 (772)
Q Consensus 183 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~------------ 250 (772)
..+..|+++.|.++.++.+...+... ..+..+||+||+|||||++++++++.++..
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred hCCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 34557888999999999998887531 224579999999999999999999988542
Q ss_pred ------------EEEEechhhhhhcccchHHHHHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHHH
Q 044198 251 ------------FLCINGPEIMSKMAGESESNLREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLL 314 (772)
Q Consensus 251 ------------~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~ 314 (772)
++.+++.. ......++.++..+.. ..+.+++|||+|.+.. ...+.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~Ll 140 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALL 140 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-----------HHHHHHH
T ss_pred HHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-----------HHHHHHH
Confidence 22222211 0111234555554432 3467999999998742 2345667
Q ss_pred HHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-cccchhHHHHHhcCCch
Q 044198 315 TLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-EDVNLETVARETHGFVG 393 (772)
Q Consensus 315 ~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~ 393 (772)
..++.. ..++.+|++|+.+..+.+.+++ |+ ..+.+++|+.++..++++..+....+. ++..++.++..+.|. .
T Consensus 141 ~~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~-~ 214 (373)
T 1jr3_A 141 KTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGS-L 214 (373)
T ss_dssp HHHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSC-H
T ss_pred HHHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCC-H
Confidence 777653 3467888888888889999987 76 569999999999999998776543222 222366777777663 4
Q ss_pred hhHHHHHHHH
Q 044198 394 ADLAALCTEG 403 (772)
Q Consensus 394 ~dl~~l~~~a 403 (772)
.++..++..+
T Consensus 215 r~~~~~l~~~ 224 (373)
T 1jr3_A 215 RDALSLTDQA 224 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 160
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.24 E-value=1.3e-11 Score=115.92 Aligned_cols=112 Identities=16% Similarity=0.198 Sum_probs=77.8
Q ss_pred cccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcccc
Q 044198 190 DVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKMAGE 266 (772)
Q Consensus 190 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~~g~ 266 (772)
++.|.+.+++.+.+.+.... ....+|||+||||||||++|++++... +.+++ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 46788888888887775421 235679999999999999999999976 66888 999776543
Q ss_pred hHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCC
Q 044198 267 SESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP 335 (772)
Q Consensus 267 ~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~ 335 (772)
......|..+ ..++|||||+|.+.+ .....|+..+... ..++.+|++||.+
T Consensus 66 --~~~~~~~~~a---~~g~l~ldei~~l~~-----------~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALA---QGGTLVLSHPEHLTR-----------EQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHH---TTSCEEEECGGGSCH-----------HHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred --hhhhcHHHHc---CCcEEEEcChHHCCH-----------HHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 1233344444 346999999998853 2335566666332 3457788888875
No 161
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.24 E-value=7.6e-11 Score=127.81 Aligned_cols=177 Identities=16% Similarity=0.215 Sum_probs=115.6
Q ss_pred CCCCCccccccCcHHHHHHHHHHH-HcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----------
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVV-ELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGC----------- 249 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i-~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~----------- 249 (772)
+..+.+|+++.|.++.++.++.++ .. + ..+ +++|+||+||||||+++++++.+..
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSDQP-----------R-DLP-HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTTCT-----------T-CCC-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHhhC-----------C-CCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 345667899999999988887766 22 1 123 3999999999999999999996421
Q ss_pred ------------------eEEEEechhhhhhcccchHHHHHHHHHHHH--------------HcCCceEEeccccccccC
Q 044198 250 ------------------YFLCINGPEIMSKMAGESESNLREAFNVAE--------------KNAPSIIFIDEIDSIAPK 297 (772)
Q Consensus 250 ------------------~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~--------------~~~p~il~iDEid~l~~~ 297 (772)
.++.+++.+.. ......++..+..+. ...|.+++|||++.+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~- 148 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK- 148 (354)
T ss_dssp ------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH-
T ss_pred eecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH-
Confidence 11222221110 001112344443332 22567999999998531
Q ss_pred CCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccC--Cc
Q 044198 298 REKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNM--KL 375 (772)
Q Consensus 298 ~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~--~l 375 (772)
...+.|+..++... .+..+|.+|+.++.+.+++++ |+ ..+.|++|+.++..++++..+... .+
T Consensus 149 ----------~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 149 ----------DAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp ----------HHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred ----------HHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 22455666666543 357788889999999999998 88 669999999999999998776433 33
Q ss_pred ccccchhHHHHHhcCC
Q 044198 376 AEDVNLETVARETHGF 391 (772)
Q Consensus 376 ~~~~~l~~la~~t~g~ 391 (772)
..+..++.++..+.|-
T Consensus 214 ~~~~~l~~i~~~~~G~ 229 (354)
T 1sxj_E 214 ETKDILKRIAQASNGN 229 (354)
T ss_dssp CCSHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHcCCC
Confidence 3133467777776553
No 162
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.24 E-value=1.1e-12 Score=123.09 Aligned_cols=112 Identities=17% Similarity=0.195 Sum_probs=79.1
Q ss_pred cccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcccccchH
Q 044198 463 DIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEA 542 (772)
Q Consensus 463 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~ 542 (772)
++.|.+...+.+.+.+... .....+++|+||||||||++|++++.... +|+.++++++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-----------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 3556666666666555421 12346799999999999999999999888 99999998865443
Q ss_pred HHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCC
Q 044198 543 NVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRP 610 (772)
Q Consensus 543 ~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 610 (772)
...+|..+. .++|||||+|.+. ......|+..|+... ..++.+|+|||++
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l~-------------~~~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQYS-------------RNIQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTCC-------------HHHHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred -hhhHHHhCC---CCeEEEeChHHCC-------------HHHHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 456676664 3599999999883 334566777776532 3457888999875
No 163
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=2.9e-11 Score=127.89 Aligned_cols=125 Identities=10% Similarity=0.132 Sum_probs=98.8
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh------CCcEEEEecccchhcccccchHHHHHHHHHHHhCC----CeEEEEcCch
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMWFGESEANVRDVFDKARQSA----PCVLFFDELD 565 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~------~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~----p~ilfiDEid 565 (772)
..++|||||||+|||++|+++|..+ +..++.+++++- ..+-..++++.+.+...+ ..|+||||+|
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~id~ir~li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCCHHHHHHHHHHHhhccccCCceEEEeccHH
Confidence 3579999999999999999999864 446777776520 122346888888886543 3799999999
Q ss_pred hhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhh
Q 044198 566 SIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCL 645 (772)
Q Consensus 566 ~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~ 645 (772)
.+. ....|.||..|+.. ..++++|.+||.|+.|-|++.+ | ++.|++|+.++..++++..+
T Consensus 93 ~lt-------------~~a~naLLk~LEep--~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 93 RMT-------------QQAANAFLKALEEP--PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp GBC-------------HHHHHHTHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HhC-------------HHHHHHHHHHHhCC--CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 982 45688999999953 4567777778889999999998 8 89999999999999888776
No 164
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.22 E-value=1.8e-10 Score=127.37 Aligned_cols=204 Identities=14% Similarity=0.168 Sum_probs=128.6
Q ss_pred ccccchHHHHHHHhhhc-cccCCchHHHhhcCC-CCCCceEE--eCCCCCchhHHHHHHHHHh---------CCcEEEEe
Q 044198 462 ADIGGLDTVKRELQETV-QYPVEHPEMFEKFGM-SPSRGVLF--YGPPGCGKTLLAKAIANEC---------QANFISIK 528 (772)
Q Consensus 462 ~~i~g~~~~k~~l~~~i-~~~~~~~~~~~~~~~-~~~~~iLl--~GppGtGKT~la~alA~~~---------~~~~i~v~ 528 (772)
+.+.|.+...+.|.+.+ ..... +. ..+..+++ +||||+|||+|++++++.+ +..++.++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 55677776666666554 32100 10 13456899 9999999999999999876 45667777
Q ss_pred cccc------hhcc---c-------ccchHH-HHHHHHHHH-hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHH
Q 044198 529 GPEL------LTMW---F-------GESEAN-VRDVFDKAR-QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLT 590 (772)
Q Consensus 529 ~~~l------~~~~---v-------g~se~~-i~~vf~~a~-~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~ 590 (772)
+... +... + |.+... ...+.+... ...|.+|+|||++.+...+. ....++..++.
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-------~~~~~l~~l~~ 166 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-------IAAEDLYTLLR 166 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-------SCHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-------cchHHHHHHHH
Confidence 5331 1110 1 111111 222222222 34578999999999964311 12456666666
Q ss_pred HhcCCC-CC--CcEEEEeecCCCC---CCC---ccccCCCCccccccCCCCCHHHHHHHHHHhhccCC---CCCcccHHH
Q 044198 591 EMDGLS-AK--KTVFVIGATNRPD---MID---PALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSP---VSKDIDLKA 658 (772)
Q Consensus 591 ~ld~~~-~~--~~v~vi~aTn~~~---~ld---~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~---~~~~~~~~~ 658 (772)
.++... .. .++.+|++||.++ .++ +.+.+ ||...+.+++++.++..++++..+.... ...+..+..
T Consensus 167 ~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~ 244 (412)
T 1w5s_A 167 VHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLEL 244 (412)
T ss_dssp HHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHH
T ss_pred HHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 666543 12 6788998998765 344 55665 6665599999999999999987664321 123345677
Q ss_pred HHHHcC------CCCHHHHHHHHHHHHHHHH
Q 044198 659 IAKYTH------GFSGADITEICQRACKCAI 683 (772)
Q Consensus 659 la~~~~------g~sg~di~~l~~~a~~~a~ 683 (772)
+++.+. | +++.+..+|+.|...|.
T Consensus 245 i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~ 274 (412)
T 1w5s_A 245 ISDVYGEDKGGDG-SARRAIVALKMACEMAE 274 (412)
T ss_dssp HHHHHCGGGTSCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCC-cHHHHHHHHHHHHHHHH
Confidence 888887 5 56788888888876654
No 165
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.20 E-value=7.8e-11 Score=124.87 Aligned_cols=144 Identities=23% Similarity=0.352 Sum_probs=92.2
Q ss_pred cccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhc---
Q 044198 190 DVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKM--- 263 (772)
Q Consensus 190 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~--- 263 (772)
++.|.+..++.+.+.+.... ....+|||+||||||||++|++++... +.+++.++|..+....
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 47788888888877776421 235689999999999999999999976 4679999987653211
Q ss_pred --ccc----hHH---HHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc---------ccCc
Q 044198 264 --AGE----SES---NLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK---------SRAH 325 (772)
Q Consensus 264 --~g~----~~~---~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~---------~~~~ 325 (772)
.|. ... .....|..+ ..++|||||++.+.. .....|+..++... ...+
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 137 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISP-----------LMQVRLLRAIQEREVQRVGSNQTISVD 137 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCH-----------HHHHHHHHHHHSSBCCBTTBCCCCBCC
T ss_pred HhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCH-----------HHHHHHHHHHhcCEeeecCCcccccCC
Confidence 110 000 111233333 246999999998853 23455666666432 1246
Q ss_pred eEEEEeeCCC-------CCCChhhhccCCceeEEEeCCCCHHH
Q 044198 326 VMVIGATNRP-------NSIDPALRRSGRFDKEIDIGVPDEVG 361 (772)
Q Consensus 326 v~vI~atn~~-------~~ld~al~r~gRf~~~i~i~~p~~~~ 361 (772)
+.+|++||++ ..+++.+.. ||. .+.+..|...+
T Consensus 138 ~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~e 177 (304)
T 1ojl_A 138 VRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQ 177 (304)
T ss_dssp CEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGG
T ss_pred eEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHH
Confidence 8899999986 245666666 664 24444444443
No 166
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.17 E-value=7.7e-10 Score=119.29 Aligned_cols=173 Identities=20% Similarity=0.277 Sum_probs=116.9
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----eEEEEec
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGC-----YFLCING 256 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~-----~~~~v~~ 256 (772)
+..+-.++++.|.++.++.|+..+.. | ..+ +++|+|||||||||+++++|+.+.. .+..+++
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 34566788999999999998877763 1 112 4999999999999999999998732 3566665
Q ss_pred hhhhhhcccchHHHHHHHHHHHHH------cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEE
Q 044198 257 PEIMSKMAGESESNLREAFNVAEK------NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIG 330 (772)
Q Consensus 257 ~~~~~~~~g~~~~~l~~~f~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~ 330 (772)
++.. + ...++..+..... ..+.+++|||+|.+.. ...+.|+..++... ....+|.
T Consensus 85 ~~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~~--~~~~~il 145 (340)
T 1sxj_C 85 SDDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN-----------AAQNALRRVIERYT--KNTRFCV 145 (340)
T ss_dssp TSCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH-----------HHHHHHHHHHHHTT--TTEEEEE
T ss_pred cccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhcCC--CCeEEEE
Confidence 4321 1 2233333333221 1357999999998842 12356777776543 3466777
Q ss_pred eeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhc--cCCcccccchhHHHHHhcC
Q 044198 331 ATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTK--NMKLAEDVNLETVARETHG 390 (772)
Q Consensus 331 atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~--~~~l~~~~~l~~la~~t~g 390 (772)
+||.+..+.+++++ |+. .+.+..++.++..+++...+. ++.+.++ .+..++..+.|
T Consensus 146 ~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~-~~~~i~~~s~G 203 (340)
T 1sxj_C 146 LANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPN-AEKALIELSNG 203 (340)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHH-HHHHHHHHHTT
T ss_pred EecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Confidence 88999999999998 876 588999999988888877663 3333322 34455554433
No 167
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.17 E-value=2.5e-11 Score=113.66 Aligned_cols=112 Identities=19% Similarity=0.268 Sum_probs=79.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcccchHH
Q 044198 190 DVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESES 269 (772)
Q Consensus 190 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~~g~~~~ 269 (772)
++.|.+++++++++.+.... ....+|||+||||||||++|++++...+ +++.++|.++....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 46788888888888776421 2356799999999999999999999887 89999998765433
Q ss_pred HHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCC
Q 044198 270 NLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP 335 (772)
Q Consensus 270 ~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~ 335 (772)
....|..+. ..++||||+|.+.+. ....|+..++... ..++.+|++||.+
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l~~~-----------~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQYSRN-----------IQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTCCHH-----------HHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred -hhhHHHhCC---CCeEEEeChHHCCHH-----------HHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 344455443 469999999988532 2344566665432 3567788888765
No 168
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.09 E-value=9.9e-11 Score=135.12 Aligned_cols=162 Identities=21% Similarity=0.222 Sum_probs=96.8
Q ss_pred cccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEE----echhhhhhc--
Q 044198 190 DVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCI----NGPEIMSKM-- 263 (772)
Q Consensus 190 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v----~~~~~~~~~-- 263 (772)
.|.|.+..++.+...+.. ..+.......+....++||+||||||||+||+++|+.++..++.. ++..+....
T Consensus 296 ~I~G~e~vk~al~~~l~~--g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 296 SIYGHWELKEALALALFG--GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp TTSCCHHHHHHHTTTTTC--CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred hhcChHHHHHHHHHHHhC--CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 577888766555322211 000000001122334799999999999999999999887655432 122221111
Q ss_pred ---ccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc-----------ccCceEEE
Q 044198 264 ---AGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK-----------SRAHVMVI 329 (772)
Q Consensus 264 ---~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~-----------~~~~v~vI 329 (772)
.+.....- ..+..+ ..+++||||+|.+.+ ...+.|+..|+... ...++.+|
T Consensus 374 ~~~~g~~~~~~-G~l~~A---~~gil~IDEid~l~~-----------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 374 EKGTGEYYLEA-GALVLA---DGGIAVIDEIDKMRD-----------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp GGGTSSCSEEE-CHHHHH---SSSEECCTTTTCCCS-----------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred ccccccccccC-CeeEec---CCCcEEeehhhhCCH-----------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 11110000 112222 346999999998743 23466777776432 12468899
Q ss_pred EeeCCCC-------------CCChhhhccCCcee-EEEeCCCCHHHHHHHHHHHhc
Q 044198 330 GATNRPN-------------SIDPALRRSGRFDK-EIDIGVPDEVGRLEVLRIHTK 371 (772)
Q Consensus 330 ~atn~~~-------------~ld~al~r~gRf~~-~i~i~~p~~~~r~~Il~~~~~ 371 (772)
+|||+.. .+++++.+ ||+. .+..+.|+.+ ...|++....
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~ 491 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILD 491 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHT
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHH
Confidence 9999986 89999998 9974 4566677777 7777766554
No 169
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.02 E-value=8.9e-09 Score=110.60 Aligned_cols=164 Identities=15% Similarity=0.210 Sum_probs=109.6
Q ss_pred cHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe-----------------------
Q 044198 194 VRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY----------------------- 250 (772)
Q Consensus 194 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~----------------------- 250 (772)
+++..+.+...+... ..++.+||+||||+|||++|+++|+.+...
T Consensus 7 ~~~~~~~l~~~i~~~------------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 7 LRPDFEKLVASYQAG------------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GHHHHHHHHHHHHTT------------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHcC------------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 455566666555431 235679999999999999999999987532
Q ss_pred -EEEEechhhhhhcccchHHHHHHHHHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCc
Q 044198 251 -FLCINGPEIMSKMAGESESNLREAFNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAH 325 (772)
Q Consensus 251 -~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~ 325 (772)
+..+++.+- ........++.+++.+.. ....|++|||+|.+.. ...+.|+..++.. ..+
T Consensus 75 d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~-----------~a~naLLk~lEep--~~~ 138 (334)
T 1a5t_A 75 DYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD-----------AAANALLKTLEEP--PAE 138 (334)
T ss_dssp TEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH-----------HHHHHHHHHHTSC--CTT
T ss_pred CEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCH-----------HHHHHHHHHhcCC--CCC
Confidence 233322100 011223456666665542 3357999999998842 2346677777753 346
Q ss_pred eEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCc
Q 044198 326 VMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFV 392 (772)
Q Consensus 326 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~ 392 (772)
+++|.+|+.++.+.|++++ |+. .+.|+.|+.++..++++... .+ ++..+..++..+.|-.
T Consensus 139 ~~~Il~t~~~~~l~~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G~~ 198 (334)
T 1a5t_A 139 TWFFLATREPERLLATLRS--RCR-LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAGSP 198 (334)
T ss_dssp EEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTTCH
T ss_pred eEEEEEeCChHhCcHHHhh--cce-eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCH
Confidence 7888889989999999998 775 59999999999999888664 22 2223556666665543
No 170
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.93 E-value=1.2e-08 Score=134.00 Aligned_cols=128 Identities=19% Similarity=0.239 Sum_probs=91.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCc
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTH 302 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~ 302 (772)
..|..+.||+|||||.+++.+|+.+|.+++.+||.+-+. ...+..+|.-+... .+..++||++.+-+
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~~------ 670 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLEE------ 670 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCH------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCCH------
Confidence 457789999999999999999999999999999976432 24566677665543 46899999987732
Q ss_pred hhhHHHHHHHHHHHhh-------------c--ccccCceEEEEeeCCC----CCCChhhhccCCceeEEEeCCCCHHHHH
Q 044198 303 GEVEKRIVSQLLTLMD-------------G--MKSRAHVMVIGATNRP----NSIDPALRRSGRFDKEIDIGVPDEVGRL 363 (772)
Q Consensus 303 ~~~~~~v~~~L~~lld-------------~--~~~~~~v~vI~atn~~----~~ld~al~r~gRf~~~i~i~~p~~~~r~ 363 (772)
++..-+..++..+.. | +.-+....+++|+|+- ..|+++++. ||-. +.+..||.+...
T Consensus 671 -~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr~-v~m~~Pd~~~i~ 746 (3245)
T 3vkg_A 671 -RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFRS-MAMIKPDREMIA 746 (3245)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TEEE-EECCSCCHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hcEE-EEEeCCCHHHHH
Confidence 222222233322211 1 2223467889999964 689999998 7744 999999999888
Q ss_pred HHHH
Q 044198 364 EVLR 367 (772)
Q Consensus 364 ~Il~ 367 (772)
+|+-
T Consensus 747 ei~L 750 (3245)
T 3vkg_A 747 QVML 750 (3245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8863
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.93 E-value=1e-08 Score=113.25 Aligned_cols=204 Identities=12% Similarity=0.106 Sum_probs=122.6
Q ss_pred cccccCcHHHHHHHHHHH-HcccCChhHHHHhCCCCCceEEE--ECCCCCcHHHHHHHHHHHh---------CCeEEEEe
Q 044198 188 YEDVGGVRKQLGQIREVV-ELPLRHPQIFKALGVKPPKGILL--HGPPGTGKTLLARAIANET---------GCYFLCIN 255 (772)
Q Consensus 188 ~~~i~G~~~~~~~i~~~i-~~~l~~~~~~~~~~~~~~~~vLL--~GppGtGKT~Lar~la~~l---------~~~~~~v~ 255 (772)
.+.+.|.+++++.|.+.+ ......+ -..+..++| +||+|+|||+|++.+++.+ +..+++++
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 367899999999998887 5321110 013457999 9999999999999999876 44677888
Q ss_pred chhh------hhhc----------ccch-HHHHHHHHHHHH-HcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHh
Q 044198 256 GPEI------MSKM----------AGES-ESNLREAFNVAE-KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLM 317 (772)
Q Consensus 256 ~~~~------~~~~----------~g~~-~~~l~~~f~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~ll 317 (772)
|... .... .+.. ......+..... ...|.+|+|||++.+....... ...+..|...+
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~-----~~~l~~l~~~~ 168 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIA-----AEDLYTLLRVH 168 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSC-----HHHHHHHHTHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcc-----hHHHHHHHHHH
Confidence 6431 1110 0111 122223333222 2457899999999886431111 12334444444
Q ss_pred hccc-cc--CceEEEEeeCCCC---CCC---hhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCC---cccccchhHHH
Q 044198 318 DGMK-SR--AHVMVIGATNRPN---SID---PALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMK---LAEDVNLETVA 385 (772)
Q Consensus 318 d~~~-~~--~~v~vI~atn~~~---~ld---~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~---l~~~~~l~~la 385 (772)
.... .. .++.+|++++.++ .++ +.+.+ +|...+.+++++.++..++++....... ...+..+..++
T Consensus 169 ~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~ 246 (412)
T 1w5s_A 169 EEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELIS 246 (412)
T ss_dssp HHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHH
T ss_pred HhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 4332 12 5788888887654 334 55555 6655699999999999999976543211 11223466677
Q ss_pred HHhc------CCchhhHHHHHHHHHHH
Q 044198 386 RETH------GFVGADLAALCTEGAMQ 406 (772)
Q Consensus 386 ~~t~------g~~~~dl~~l~~~a~~~ 406 (772)
..+. |.. ..+..++..+...
T Consensus 247 ~~~~~~~~~~G~p-~~~~~l~~~a~~~ 272 (412)
T 1w5s_A 247 DVYGEDKGGDGSA-RRAIVALKMACEM 272 (412)
T ss_dssp HHHCGGGTSCCCH-HHHHHHHHHHHHH
T ss_pred HHHHHhccCCCcH-HHHHHHHHHHHHH
Confidence 7777 543 3455556555433
No 172
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.93 E-value=7.8e-09 Score=109.21 Aligned_cols=142 Identities=11% Similarity=0.189 Sum_probs=100.9
Q ss_pred CcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCeEEEEechhhhhhcccc
Q 044198 193 GVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET------GCYFLCINGPEIMSKMAGE 266 (772)
Q Consensus 193 G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l------~~~~~~v~~~~~~~~~~g~ 266 (772)
|.++.++.|+..+... . ...+||+||||+|||++++++|+.+ ...++.+++.. . ..
T Consensus 1 g~~~~~~~L~~~i~~~------------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--NI 62 (305)
T ss_dssp ---CHHHHHHHHHHTC------------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--CB
T ss_pred ChHHHHHHHHHHHHCC------------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--CC
Confidence 4566677777776541 1 3579999999999999999999864 23566666431 0 12
Q ss_pred hHHHHHHHHHHHHHc----CCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhh
Q 044198 267 SESNLREAFNVAEKN----APSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPAL 342 (772)
Q Consensus 267 ~~~~l~~~f~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al 342 (772)
....++.+++.+... ...|++|||+|.+.. ...+.|+..++.. ...+.+|.+|+.++.+.|++
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt~-----------~a~naLLk~LEep--~~~t~fIl~t~~~~kl~~tI 129 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ-----------QAANAFLKALEEP--PEYAVIVLNTRRWHYLLPTI 129 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-----------HHHHHTHHHHHSC--CTTEEEEEEESCGGGSCHHH
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhCH-----------HHHHHHHHHHhCC--CCCeEEEEEECChHhChHHH
Confidence 334567777766432 235999999998842 2246788888753 34677778888889999999
Q ss_pred hccCCceeEEEeCCCCHHHHHHHHHHHh
Q 044198 343 RRSGRFDKEIDIGVPDEVGRLEVLRIHT 370 (772)
Q Consensus 343 ~r~gRf~~~i~i~~p~~~~r~~Il~~~~ 370 (772)
++ | .++|++|+.++..+.++...
T Consensus 130 ~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 130 KS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred Hc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 98 7 68999999999988887665
No 173
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.91 E-value=1e-08 Score=119.14 Aligned_cols=52 Identities=27% Similarity=0.427 Sum_probs=44.0
Q ss_pred CCCCCccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 044198 182 RLDDVGYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG 248 (772)
Q Consensus 182 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~ 248 (772)
.+++..++++.|.+..++.+...+.. ..+++|+|||||||||+++++++.++
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 45667788999999998888776653 35899999999999999999999875
No 174
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.91 E-value=4.3e-10 Score=117.59 Aligned_cols=122 Identities=23% Similarity=0.320 Sum_probs=81.4
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHhCCc--EEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhh
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANECQAN--FISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAI 569 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~~~~--~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~ 569 (772)
|+.+.+.++|+||||||||+||.++|...+.+ |+....++.++.+..+.+..+..+++...+.. +||||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 44455668999999999999999999875544 56664455555554455666666777766654 999999999965
Q ss_pred ccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccc
Q 044198 570 QRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPAL 617 (772)
Q Consensus 570 ~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~al 617 (772)
..... +..+...+.+.++|..|+++....++.+|++|| |...|+++
T Consensus 197 ~~~~~-s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGN-TTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccc-cccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 44321 111223566778888887765556778899999 66777765
No 175
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.87 E-value=5.7e-09 Score=101.45 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=61.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh----CCeEEEEechhhhhhcccchHHH-HHHHHHHHHHcCCceEEeccccc
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET----GCYFLCINGPEIMSKMAGESESN-LREAFNVAEKNAPSIIFIDEIDS 293 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l----~~~~~~v~~~~~~~~~~g~~~~~-l~~~f~~a~~~~p~il~iDEid~ 293 (772)
.+..+.+++|+||||||||||++++++.+ +..++.++..++........... ....++. -..|.+|+|||++.
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~ 111 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGS 111 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSS
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCC
Confidence 34456789999999999999999999887 55667777776654322111000 0011221 13578999999974
Q ss_pred cccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCC
Q 044198 294 IAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP 335 (772)
Q Consensus 294 l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~ 335 (772)
... +. .....|..+++...... ..+|.+||.+
T Consensus 112 ~~~------~~---~~~~~l~~ll~~~~~~~-~~ii~tsn~~ 143 (180)
T 3ec2_A 112 ERL------SD---WQRELISYIITYRYNNL-KSTIITTNYS 143 (180)
T ss_dssp SCC------CH---HHHHHHHHHHHHHHHTT-CEEEEECCCC
T ss_pred CcC------CH---HHHHHHHHHHHHHHHcC-CCEEEEcCCC
Confidence 321 11 12234555555443333 4555567655
No 176
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.85 E-value=2.5e-09 Score=90.19 Aligned_cols=77 Identities=35% Similarity=0.607 Sum_probs=68.4
Q ss_pred eCCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccccchhhHhhhhhhhcc
Q 044198 354 IGVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEEDTIDAEVLSSMYVT 433 (772)
Q Consensus 354 i~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 433 (772)
-.+|+.++|.+||+.+++++++..+++++.+|..|+||+|+||..+|++|++.++++. ...|+
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~-----------------~~~I~ 70 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------------RVHVT 70 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT-----------------CSEEC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc-----------------CCCCC
Confidence 3689999999999999999999889999999999999999999999999999998764 23578
Q ss_pred chhhhhhhhhcCcc
Q 044198 434 NENLNAAVAITSPS 447 (772)
Q Consensus 434 ~~d~~~al~~~~ps 447 (772)
.+||..|+..+.|.
T Consensus 71 ~~df~~Al~~v~p~ 84 (86)
T 2krk_A 71 QEDFEMAVAKVMQK 84 (86)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHccC
Confidence 89999998877653
No 177
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.84 E-value=2.1e-09 Score=104.52 Aligned_cols=106 Identities=20% Similarity=0.150 Sum_probs=63.3
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh----CCcEEEEecccchhcccccchH-HHHHHHHHHHhCCCeEEEEcCchh
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC----QANFISIKGPELLTMWFGESEA-NVRDVFDKARQSAPCVLFFDELDS 566 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~----~~~~i~v~~~~l~~~~vg~se~-~i~~vf~~a~~~~p~ilfiDEid~ 566 (772)
....+.+++|+||||||||+|++++++.+ +..++.++..++...+...... ....+.+... .|.+|+|||++.
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~llilDE~~~ 111 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVL--NSPVLVLDDLGS 111 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHH--TCSEEEEETCSS
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhc--CCCEEEEeCCCC
Confidence 34456789999999999999999999887 5566777777766543211100 0012222222 467999999975
Q ss_pred hhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCC
Q 044198 567 IAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPD 611 (772)
Q Consensus 567 l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 611 (772)
.. ........+..++.... . .+..+|.|||.+.
T Consensus 112 ~~--------~~~~~~~~l~~ll~~~~---~-~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 112 ER--------LSDWQRELISYIITYRY---N-NLKSTIITTNYSL 144 (180)
T ss_dssp SC--------CCHHHHHHHHHHHHHHH---H-TTCEEEEECCCCS
T ss_pred Cc--------CCHHHHHHHHHHHHHHH---H-cCCCEEEEcCCCh
Confidence 41 11113334444444432 1 2346777887753
No 178
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.79 E-value=3.5e-09 Score=99.63 Aligned_cols=103 Identities=15% Similarity=0.213 Sum_probs=65.0
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhcc
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQR 571 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r 571 (772)
+...++|+||+|+|||+|+++++... +...+.+++.++... +....|.+|+|||++.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~- 98 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE- 98 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH-
Confidence 45679999999999999999999987 666888888876543 11234679999999875321
Q ss_pred CCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecC-CCCCCC--ccccCCCCccccc
Q 044198 572 GSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATN-RPDMID--PALLRPGRLDQLI 627 (772)
Q Consensus 572 ~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn-~~~~ld--~allrpgRf~~~i 627 (772)
. ...|+..++.....+..++|.||| .|+.+. +.+.+ ||..-.
T Consensus 99 ---------~---~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~ 143 (149)
T 2kjq_A 99 ---------E---QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCL 143 (149)
T ss_dssp ---------H---HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSE
T ss_pred ---------H---HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHH--HHhcCe
Confidence 1 233444443332222332344555 565443 56665 775433
No 179
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.77 E-value=8.7e-09 Score=85.38 Aligned_cols=73 Identities=37% Similarity=0.648 Sum_probs=65.3
Q ss_pred CCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccccchhhHhhhhhhhccc
Q 044198 355 GVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEEDTIDAEVLSSMYVTN 434 (772)
Q Consensus 355 ~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 434 (772)
|+|+.++|.+||+.+++++++..++++..+|..|+||+|+||..+|++|++.++++. ...++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------------~~~i~~ 63 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------------RVHVTQ 63 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------CSEECH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------------CCCCCH
Confidence 689999999999999999998889999999999999999999999999999998763 234788
Q ss_pred hhhhhhhhhc
Q 044198 435 ENLNAAVAIT 444 (772)
Q Consensus 435 ~d~~~al~~~ 444 (772)
+||..|+..+
T Consensus 64 ~d~~~Al~~v 73 (78)
T 3kw6_A 64 EDFEMAVAKV 73 (78)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8999888765
No 180
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.76 E-value=7.9e-09 Score=97.21 Aligned_cols=100 Identities=16% Similarity=0.324 Sum_probs=65.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCC
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKR 298 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~ 298 (772)
+...++|+||+|+|||+|++++++.+ +...+++++.++... .....+.+|+|||++.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH
Confidence 45689999999999999999999987 666788888765433 012347799999998754211
Q ss_pred CCCchhhHHHHHHHHHHHhhcccccCce-EEEEeeCCCCCCC--hhhhccCCce
Q 044198 299 EKTHGEVEKRIVSQLLTLMDGMKSRAHV-MVIGATNRPNSID--PALRRSGRFD 349 (772)
Q Consensus 299 ~~~~~~~~~~v~~~L~~lld~~~~~~~v-~vI~atn~~~~ld--~al~r~gRf~ 349 (772)
...|..+++....+... +++++..+++.+. +++++ |+.
T Consensus 100 -----------~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~S--Rl~ 140 (149)
T 2kjq_A 100 -----------QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRT--RMA 140 (149)
T ss_dssp -----------HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHH--HGG
T ss_pred -----------HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHH--HHh
Confidence 24455555554444343 4554433554443 77776 654
No 181
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.73 E-value=5.7e-09 Score=113.09 Aligned_cols=119 Identities=21% Similarity=0.282 Sum_probs=82.0
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhh-c
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAI-Q 570 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~-~ 570 (772)
+++++..++|+||||+||||+++++++..+..++.+..++-. ....+..+| ...++|+||++.+.. .
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~------~~~~lg~~~------q~~~~l~dd~~~~~~~~ 232 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR------LNFELGVAI------DQFLVVFEDVKGTGGES 232 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT------HHHHHGGGT------TCSCEEETTCCCSTTTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh------HHHHHHHhc------chhHHHHHHHHHHHHHH
Confidence 677888899999999999999999999987766654443310 011122233 235789999999875 3
Q ss_pred cCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCC
Q 044198 571 RGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPL 631 (772)
Q Consensus 571 r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~ 631 (772)
|+.. ...+. .....+...+||. +.|+++||+++.+ +++++|||++..++...
T Consensus 233 r~l~--~~~~~-~~~~~l~~~ldG~-----v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 233 RDLP--SGQGI-NNLDNLRDYLDGS-----VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTCC--CCSHH-HHHHTTHHHHHCS-----SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred hhcc--ccCcc-hHHHHHHHHhcCC-----CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 3221 11111 1234566777763 4578889999999 89999999998888755
No 182
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.70 E-value=2.1e-08 Score=109.54 Aligned_cols=143 Identities=18% Similarity=0.157 Sum_probs=84.8
Q ss_pred ccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHH-HHHhCCcEE-EEeccc---chhcc--
Q 044198 464 IGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAI-ANECQANFI-SIKGPE---LLTMW-- 536 (772)
Q Consensus 464 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~al-A~~~~~~~i-~v~~~~---l~~~~-- 536 (772)
|.|++.+|+.+.-.+...... .+...++||.|+||| ||++|+++ +..+....+ ...++. +....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEc
Confidence 678888888776554332111 122337999999999 99999999 766543222 111111 11110
Q ss_pred -cccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-------CCCcEEEEeecC
Q 044198 537 -FGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-------AKKTVFVIGATN 608 (772)
Q Consensus 537 -vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-------~~~~v~vi~aTn 608 (772)
-| ..-. ...+..|.. .++|+|||+.+ ...+++.|+..|+.-. -..++.||||+|
T Consensus 286 ~tG-~~~~-~G~l~LAdg---Gvl~lDEIn~~-------------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~N 347 (506)
T 3f8t_A 286 DRG-WALR-AGAAVLADG---GILAVDHLEGA-------------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAIN 347 (506)
T ss_dssp SSS-EEEE-ECHHHHTTT---SEEEEECCTTC-------------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEEC
T ss_pred CCC-cccC-CCeeEEcCC---CeeehHhhhhC-------------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeC
Confidence 01 0000 112233433 49999999887 3667888998887431 134689999999
Q ss_pred CCC-----------CCCccccCCCCcccc-ccCCCCCHH
Q 044198 609 RPD-----------MIDPALLRPGRLDQL-IYIPLPDEH 635 (772)
Q Consensus 609 ~~~-----------~ld~allrpgRf~~~-i~~~~p~~~ 635 (772)
..+ .|.++++. |||.. +..+.|+.+
T Consensus 348 P~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e 384 (506)
T 3f8t_A 348 PGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPG 384 (506)
T ss_dssp CCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC-----
T ss_pred cccccCCCCCccccCCChHHhh--heeeEEEecCCCChh
Confidence 865 67789998 99953 344555543
No 183
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.66 E-value=2.5e-08 Score=84.50 Aligned_cols=74 Identities=30% Similarity=0.460 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccccchhhHhhhhhhhccchhh
Q 044198 358 DEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEEDTIDAEVLSSMYVTNENL 437 (772)
Q Consensus 358 ~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 437 (772)
|.++|.+||+.+++++++..+++++.+|..|+||+|+||..+|++|++.++++.. ..++.+||
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~-----------------~~i~~~df 64 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR-----------------KVATEKDF 64 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC-----------------SSBCHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc-----------------ccCCHHHH
Confidence 6789999999999999999999999999999999999999999999999987642 24788999
Q ss_pred hhhhhhcCccc
Q 044198 438 NAAVAITSPSA 448 (772)
Q Consensus 438 ~~al~~~~ps~ 448 (772)
..|+..+.+..
T Consensus 65 ~~Al~~v~~~~ 75 (88)
T 3vlf_B 65 LKAVDKVISGY 75 (88)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHhcCc
Confidence 99999887654
No 184
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.64 E-value=2.7e-08 Score=108.90 Aligned_cols=168 Identities=21% Similarity=0.286 Sum_probs=100.3
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhC---CcEEEEecccchhc-------------ccccchHHHHHHHHHHHhCCCeEE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPELLTM-------------WFGESEANVRDVFDKARQSAPCVL 559 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~---~~~i~v~~~~l~~~-------------~vg~se~~i~~vf~~a~~~~p~il 559 (772)
..+++++|++|||||++|+++..... .+|+.++++.+-.. |.|... .....|..|.. .+|
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~-~~~g~~~~a~~---gtl 235 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVS-SKEGFFELADG---GTL 235 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCS-CBCCHHHHTTT---SEE
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCccc-ccCCceeeCCC---cEE
Confidence 45689999999999999999998764 68999999875321 112211 12345666654 499
Q ss_pred EEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-----C----CCcEEEEeecCCCC-------CCCccccCCCCc
Q 044198 560 FFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-----A----KKTVFVIGATNRPD-------MIDPALLRPGRL 623 (772)
Q Consensus 560 fiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-----~----~~~v~vi~aTn~~~-------~ld~allrpgRf 623 (772)
|||||+.+ ...++..||..|+... . ..++-+|+|||+.- .+.+.+.. |+
T Consensus 236 fldei~~l-------------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl 300 (387)
T 1ny5_A 236 FLDEIGEL-------------SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RL 300 (387)
T ss_dssp EEESGGGC-------------CHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HH
T ss_pred EEcChhhC-------------CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hh
Confidence 99999998 3556777888877421 1 13577999999731 22223322 33
Q ss_pred c-ccccCCCCCH--HHHHHHHHHhhc----cCCCC-CcccHHHHHHHc-CCCCH--HHHHHHHHHHHHHH
Q 044198 624 D-QLIYIPLPDE--HSRLQIFKSCLR----KSPVS-KDIDLKAIAKYT-HGFSG--ADITEICQRACKCA 682 (772)
Q Consensus 624 ~-~~i~~~~p~~--~~r~~Il~~~~~----~~~~~-~~~~~~~la~~~-~g~sg--~di~~l~~~a~~~a 682 (772)
. ..|.+|+.-. ++...+++.+++ +.... ..++-+.+.... ..|.| ++|+++++.|...+
T Consensus 301 ~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 301 GVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp TTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC
T ss_pred cCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 3 2244444322 444445555443 22222 223333333322 33444 69999999887643
No 185
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.64 E-value=2.1e-08 Score=104.86 Aligned_cols=120 Identities=19% Similarity=0.255 Sum_probs=70.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEecccccccc
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANETGCY--FLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAP 296 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~--~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~ 296 (772)
|+.+...++|+||||||||+|+.+++...+.. |+.....+..+.+..+.+..+..+++...... ++|||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 34455668999999999999999999865433 45542233333333455666666666665544 999999999865
Q ss_pred CCCCC--chhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhh
Q 044198 297 KREKT--HGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPAL 342 (772)
Q Consensus 297 ~~~~~--~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al 342 (772)
..... .+.. .+.+.+++..+.++....++.+|+++| +...++++
T Consensus 197 ~~~~~s~~G~v-~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNTTSGGI-SRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ----------C-CHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccccccchH-HHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 43321 1111 122334444444443445677888888 44556554
No 186
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.63 E-value=3.9e-08 Score=82.48 Aligned_cols=74 Identities=24% Similarity=0.402 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccccchhhHhhhhhhhccchhh
Q 044198 358 DEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEEDTIDAEVLSSMYVTNENL 437 (772)
Q Consensus 358 ~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 437 (772)
|.++|.+||+.+++++++..+++++.+|..|+||+|+||..+|++|++.++++. ...++.+||
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------------~~~i~~~df 64 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN-----------------RYIVLAKDF 64 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC-----------------CSSBCHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------cCCcCHHHH
Confidence 678999999999999998889999999999999999999999999999988754 235788999
Q ss_pred hhhhhhcCccc
Q 044198 438 NAAVAITSPSA 448 (772)
Q Consensus 438 ~~al~~~~ps~ 448 (772)
..|+..+.|+.
T Consensus 65 ~~Al~~~~ps~ 75 (83)
T 3aji_B 65 EKAYKTVIKKD 75 (83)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHHccCc
Confidence 99999998875
No 187
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.61 E-value=1.9e-06 Score=92.39 Aligned_cols=180 Identities=20% Similarity=0.211 Sum_probs=108.1
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh-------
Q 044198 188 YEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIM------- 260 (772)
Q Consensus 188 ~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~------- 260 (772)
...+.|-+++++.|.+.+.. ...++|+||+|+|||+|++.+++..+ .+++++....
T Consensus 11 ~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 11 REDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHIT 73 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBC
T ss_pred hHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCC
Confidence 34578999999999887753 15799999999999999999999876 5666664321
Q ss_pred -----h---hcc-------------------------cchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHH
Q 044198 261 -----S---KMA-------------------------GESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEK 307 (772)
Q Consensus 261 -----~---~~~-------------------------g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~ 307 (772)
. ... ......+..+.+.+....|.+|+|||++.+..... ....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~----~~~~ 149 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS----RGGK 149 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT----TTTH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc----cchh
Confidence 0 000 01111122222222223488999999998854110 0112
Q ss_pred HHHHHHHHHhhcccccCceEEEEeeCCCC---------CCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcc-c
Q 044198 308 RIVSQLLTLMDGMKSRAHVMVIGATNRPN---------SIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLA-E 377 (772)
Q Consensus 308 ~v~~~L~~lld~~~~~~~v~vI~atn~~~---------~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~-~ 377 (772)
.+...|..+++.. .++.+|.++.... .....+ .+|+...+.+++.+.++..+++.......... .
T Consensus 150 ~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l--~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~ 224 (350)
T 2qen_A 150 ELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPL--YGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP 224 (350)
T ss_dssp HHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTT--TTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC
T ss_pred hHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCcc--ccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 3344454544432 3555565554321 111112 24677789999999999999988765432221 2
Q ss_pred ccchhHHHHHhcCCch
Q 044198 378 DVNLETVARETHGFVG 393 (772)
Q Consensus 378 ~~~l~~la~~t~g~~~ 393 (772)
...+..+...+.|+..
T Consensus 225 ~~~~~~i~~~tgG~P~ 240 (350)
T 2qen_A 225 ENEIEEAVELLDGIPG 240 (350)
T ss_dssp HHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCCHH
Confidence 2346677788888764
No 188
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.61 E-value=8.7e-07 Score=95.32 Aligned_cols=185 Identities=14% Similarity=0.150 Sum_probs=110.6
Q ss_pred ccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch------
Q 044198 460 RWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL------ 533 (772)
Q Consensus 460 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~------ 533 (772)
....+.|-+...+.|.+ +.. ..++++||+|+|||+|++.+++..+..++.+++...-
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYIS 73 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCC
T ss_pred CHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCC
Confidence 34556676666666655 321 3699999999999999999999887777777765320
Q ss_pred -----h---------------------cccc-------c-------chHHHHHHHHHHHhC--CCeEEEEcCchhhhhcc
Q 044198 534 -----T---------------------MWFG-------E-------SEANVRDVFDKARQS--APCVLFFDELDSIAIQR 571 (772)
Q Consensus 534 -----~---------------------~~vg-------~-------se~~i~~vf~~a~~~--~p~ilfiDEid~l~~~r 571 (772)
. ...| . ....+..+++..... .|.+|+|||++.+....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC
Confidence 0 0000 0 012345555554442 38899999999985421
Q ss_pred CCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCC---------CccccCCCCccccccCCCCCHHHHHHHHH
Q 044198 572 GSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMI---------DPALLRPGRLDQLIYIPLPDEHSRLQIFK 642 (772)
Q Consensus 572 ~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l---------d~allrpgRf~~~i~~~~p~~~~r~~Il~ 642 (772)
. ......+..+... . .++.+|+|++....+ ...+ .||+...+.+++.+.++..++++
T Consensus 154 ~------~~~~~~l~~~~~~---~---~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~l~ 219 (357)
T 2fna_A 154 G------VNLLPALAYAYDN---L---KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEFLR 219 (357)
T ss_dssp T------CCCHHHHHHHHHH---C---TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHHHH
T ss_pred c------hhHHHHHHHHHHc---C---CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHHHH
Confidence 1 0112233333322 1 245566666543211 1122 24776789999999999999998
Q ss_pred HhhccCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 044198 643 SCLRKSPVSKDIDLKAIAKYTHGFSGADITEICQR 677 (772)
Q Consensus 643 ~~~~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~ 677 (772)
..+...+...+ +...+.+.+.|+. .-++.++..
T Consensus 220 ~~~~~~~~~~~-~~~~i~~~t~G~P-~~l~~~~~~ 252 (357)
T 2fna_A 220 RGFQEADIDFK-DYEVVYEKIGGIP-GWLTYFGFI 252 (357)
T ss_dssp HHHHHHTCCCC-CHHHHHHHHCSCH-HHHHHHHHH
T ss_pred HHHHHcCCCCC-cHHHHHHHhCCCH-HHHHHHHHH
Confidence 87654333322 2378888888865 345555543
No 189
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.57 E-value=4.3e-08 Score=96.99 Aligned_cols=69 Identities=29% Similarity=0.417 Sum_probs=48.8
Q ss_pred CceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhcccccc-hHHHHHHHHHHHhCCCeEEEEcCchhh
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGES-EANVRDVFDKARQSAPCVLFFDELDSI 567 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~s-e~~i~~vf~~a~~~~p~ilfiDEid~l 567 (772)
.+++|+||||||||++|++++..+ +.+++.++.+++...+.... ...+..++...... .+|||||++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lilDei~~~ 127 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKKV--PVLMLDDLGAE 127 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHHS--SEEEEEEECCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcCC--CEEEEcCCCCC
Confidence 789999999999999999999887 56788888887665432211 11123344444433 59999999765
No 190
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.56 E-value=1.3e-06 Score=93.91 Aligned_cols=177 Identities=16% Similarity=0.212 Sum_probs=108.5
Q ss_pred ccccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh------
Q 044198 187 GYEDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIM------ 260 (772)
Q Consensus 187 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~------ 260 (772)
....+.|-+++++.|.+ +.. ..++|+||+|+|||+|++.+++..+..++++++....
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYIS 73 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCC
T ss_pred CHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCC
Confidence 34567899999888877 531 3799999999999999999999987777788765320
Q ss_pred -hhcc------------------------------c---c------hHHHHHHHHHHHHHc--CCceEEeccccccccCC
Q 044198 261 -SKMA------------------------------G---E------SESNLREAFNVAEKN--APSIIFIDEIDSIAPKR 298 (772)
Q Consensus 261 -~~~~------------------------------g---~------~~~~l~~~f~~a~~~--~p~il~iDEid~l~~~~ 298 (772)
.... + . ....+..+++..... .|.+|+|||++.+....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC
Confidence 0000 0 0 011234455444442 38899999999886421
Q ss_pred CCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCC---------hhhhccCCceeEEEeCCCCHHHHHHHHHHH
Q 044198 299 EKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSID---------PALRRSGRFDKEIDIGVPDEVGRLEVLRIH 369 (772)
Q Consensus 299 ~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld---------~al~r~gRf~~~i~i~~p~~~~r~~Il~~~ 369 (772)
. . .+...|..+.+.. .++.+|.+++....+. ..+ .+|+...+.+++.+.++..+++...
T Consensus 154 ~---~----~~~~~l~~~~~~~---~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~l~~~ 221 (357)
T 2fna_A 154 G---V----NLLPALAYAYDNL---KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEFLRRG 221 (357)
T ss_dssp T---C----CCHHHHHHHHHHC---TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHHHHHH
T ss_pred c---h----hHHHHHHHHHHcC---CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHHHHHH
Confidence 1 1 1223333333322 2456666665431111 112 2466678999999999999999876
Q ss_pred hccCCcccccchhHHHHHhcCCch
Q 044198 370 TKNMKLAEDVNLETVARETHGFVG 393 (772)
Q Consensus 370 ~~~~~l~~~~~l~~la~~t~g~~~ 393 (772)
........+ +...+...+.|+..
T Consensus 222 ~~~~~~~~~-~~~~i~~~t~G~P~ 244 (357)
T 2fna_A 222 FQEADIDFK-DYEVVYEKIGGIPG 244 (357)
T ss_dssp HHHHTCCCC-CHHHHHHHHCSCHH
T ss_pred HHHcCCCCC-cHHHHHHHhCCCHH
Confidence 542222222 23677888888765
No 191
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.50 E-value=1.4e-07 Score=93.28 Aligned_cols=71 Identities=31% Similarity=0.510 Sum_probs=47.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhhcccch-HHHHHHHHHHHHHcCCceEEeccccccc
Q 044198 223 PKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSKMAGES-ESNLREAFNVAEKNAPSIIFIDEIDSIA 295 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~~~g~~-~~~l~~~f~~a~~~~p~il~iDEid~l~ 295 (772)
+.+++|+||||||||+|++++++.+ +.+++.++++++........ ...+...+..... +.+|+|||++...
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 3789999999999999999999987 56788888877654322110 0011223333332 3599999997653
No 192
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.50 E-value=7.8e-08 Score=94.79 Aligned_cols=127 Identities=14% Similarity=0.168 Sum_probs=79.6
Q ss_pred ceEEeCCCCCchhHHHHHHHHHh--------C-CcEEEEecccchhccc----------ccchH--HHHHHHHHH--HhC
Q 044198 498 GVLFYGPPGCGKTLLAKAIANEC--------Q-ANFISIKGPELLTMWF----------GESEA--NVRDVFDKA--RQS 554 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~--------~-~~~i~v~~~~l~~~~v----------g~se~--~i~~vf~~a--~~~ 554 (772)
-.|++|+||||||++|..++... + .+++..+..++...+. ...+. ....++..+ ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 47899999999999998865442 3 5555566555532221 11111 112333331 223
Q ss_pred CCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCH
Q 044198 555 APCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDE 634 (772)
Q Consensus 555 ~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~ 634 (772)
..++|+|||++.+.+.+... .+ ..+ +|..+.... ...+-+|.+|+.++.||.++.. |++..+++++|..
T Consensus 87 ~~~vliIDEAq~l~~~~~~~---~e-~~r----ll~~l~~~r-~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAG---SK-IPE----NVQWLNTHR-HQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKM 155 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTT---CC-CCH----HHHGGGGTT-TTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSS
T ss_pred CceEEEEEChhhhccCcccc---ch-hHH----HHHHHHhcC-cCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCccc
Confidence 35799999999998765321 11 122 555665433 3455677788889999999887 9999999887644
Q ss_pred H
Q 044198 635 H 635 (772)
Q Consensus 635 ~ 635 (772)
.
T Consensus 156 ~ 156 (199)
T 2r2a_A 156 G 156 (199)
T ss_dssp C
T ss_pred C
Confidence 3
No 193
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.50 E-value=2.7e-06 Score=91.17 Aligned_cols=189 Identities=19% Similarity=0.249 Sum_probs=110.0
Q ss_pred ccccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch------
Q 044198 460 RWADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL------ 533 (772)
Q Consensus 460 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~------ 533 (772)
.-..+.|-+...+.|.+.+.. + ..++++||+|+|||+|++.+++..+ .+.+++....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHI 72 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCB
T ss_pred ChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCC
Confidence 334566777666666654431 1 5699999999999999999998875 5555543321
Q ss_pred ------h---ccccc---------------------chHHHHHHHH----HHHhCCCeEEEEcCchhhhhccCCCCCCCC
Q 044198 534 ------T---MWFGE---------------------SEANVRDVFD----KARQSAPCVLFFDELDSIAIQRGSSVGDGG 579 (772)
Q Consensus 534 ------~---~~vg~---------------------se~~i~~vf~----~a~~~~p~ilfiDEid~l~~~r~~~~~~~~ 579 (772)
. ..++. ....+..+++ .+....|.+|+|||++.+......
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~------ 146 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR------ 146 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT------
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc------
Confidence 0 00100 0112233332 233223899999999998542100
Q ss_pred chhHHHHHHHHHhcCCCCCCcEEEEeecCCCC---------CCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCC
Q 044198 580 GVDRIVNQLLTEMDGLSAKKTVFVIGATNRPD---------MIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPV 650 (772)
Q Consensus 580 ~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~---------~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~ 650 (772)
....+...|-..++.. .++.+|.|++... .....+. ||+...+.+++.+.++-.++++..+.....
T Consensus 147 ~~~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~ 221 (350)
T 2qen_A 147 GGKELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNL 221 (350)
T ss_dssp TTHHHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred chhhHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 0123344343334432 2455555554321 1112222 477678999999999999999887755443
Q ss_pred C-CcccHHHHHHHcCCCCHHHHHHHHHH
Q 044198 651 S-KDIDLKAIAKYTHGFSGADITEICQR 677 (772)
Q Consensus 651 ~-~~~~~~~la~~~~g~sg~di~~l~~~ 677 (772)
. .+..+..+.+.+.|+. .-++.++..
T Consensus 222 ~~~~~~~~~i~~~tgG~P-~~l~~~~~~ 248 (350)
T 2qen_A 222 DVPENEIEEAVELLDGIP-GWLVVFGVE 248 (350)
T ss_dssp CCCHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 3 3345677888888865 446555543
No 194
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.46 E-value=2.3e-07 Score=91.48 Aligned_cols=125 Identities=21% Similarity=0.266 Sum_probs=77.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh--------C-CeEEEEechhhhhhcc----------cc-----hHHHHHHHHHHHH
Q 044198 224 KGILLHGPPGTGKTLLARAIANET--------G-CYFLCINGPEIMSKMA----------GE-----SESNLREAFNVAE 279 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l--------~-~~~~~v~~~~~~~~~~----------g~-----~~~~l~~~f~~a~ 279 (772)
.-+|++|+||||||++|..++... + .+++..+..++.-... .. ....+...+.. .
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-~ 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK-P 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-G
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-c
Confidence 358999999999999998865442 3 5555555554432111 00 11222222211 2
Q ss_pred HcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCC
Q 044198 280 KNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPD 358 (772)
Q Consensus 280 ~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~ 358 (772)
....++|+|||++.+.+.+....+.. + ++..+...+ ...+.+|.++++++.|+.+++. |+...+++..|.
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~~--r----ll~~l~~~r-~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~ 154 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKIP--E----NVQWLNTHR-HQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNK 154 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCCC--H----HHHGGGGTT-TTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECS
T ss_pred ccCceEEEEEChhhhccCccccchhH--H----HHHHHHhcC-cCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcc
Confidence 34577999999999976553222111 1 334444322 3456778888889999999987 999999887754
No 195
>1qcs_A N-ethylmaleimide sensitive factor (NSF-N); double-PSI beta barrel alpha beta roll, fusion protein; 1.90A {Cricetulus griseus} SCOP: b.52.2.3 d.31.1.1 PDB: 1qdn_A
Probab=98.45 E-value=3.9e-06 Score=83.02 Aligned_cols=154 Identities=10% Similarity=0.079 Sum_probs=104.6
Q ss_pred EEEecccCCC---CcEEEECHhhHhhcCCCCCCeEEEeecCcceEEEEEEeCCCCCCCeEEEcHHHHhhcCCCCCCeEEE
Q 044198 12 LIVEEALQDD---NSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDDDTCDASKIRMNKVVRSNLRLRLGDLVSV 88 (772)
Q Consensus 12 ~~v~~~~~~~---~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~v~v 88 (772)
++|.....+. .+++|+||++.. .+.+|.+........|+.+.+++.+++|.|.++..+|+|+++.+||.|+|
T Consensus 10 l~v~~~P~~~la~TN~~~vsp~Df~-----~~~~v~v~~~~~~~fVft~~~~~~i~~G~Igls~~QR~wa~lsl~~~v~V 84 (211)
T 1qcs_A 10 MQAARCPTDELSLSNCAVVSEKDYQ-----SGQHVIVRTSPNHKYIFTLRTHPSVVPGSVAFSLPQRKWAGLSIGQEIEV 84 (211)
T ss_dssp EEEEECSCHHHHHHTCEEECTTTCC-----TTCEEEEEEETTEEEEEEEEECTTSCTTEEEECHHHHHHHTCCTTCEEEE
T ss_pred EEEecCCChhhhhcceEEECHHHcC-----CCceEEEEecCCCeEEEEEecCCCCCCCEeecCHHHHhhhcccCCCcEEE
Confidence 7776665542 789999999986 45567774222346788999999999999999999999999999999999
Q ss_pred EEccCC---CCCceeEee--ccc--cc-ccCcchhhHHHHHHHhhhcCCcCccCCcEEEEecCceeEEEEEEEec-----
Q 044198 89 KICNDV---VNATKMHVL--PLH--DT-IEGITGNLFDVYLKPYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTE----- 155 (772)
Q Consensus 89 ~~~~~~---~~~~~v~~~--~~~--~~-~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~----- 155 (772)
+++... .....+.+. ... .. ...++.+.+...++..|. ..++++|+.+.+...+..+.++|.+++
T Consensus 85 ~~y~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~--~Qift~gQ~l~f~~~g~~l~l~V~~v~~~d~~ 162 (211)
T 1qcs_A 85 ALYSFDKAKQCIGTMTIEIDFLQKKNIDSNPYDTDKMAAEFIQQFN--NQAFSVGQQLVFSFNDKLFGLLVKDIEAMDPS 162 (211)
T ss_dssp EEECCCHHHHBEEEEEEEEEESCGGGCCCCEEEHHHHHHHHHHHHT--TCEEETTCEEEEEETTEEEEEEEEEEEECCCC
T ss_pred EEecCCCCCceEEEEEEEEEehhcCCCCCcccCHHHHHHHHHHHHc--CCCCCCCCEEEEEECCcEEEEEEeEEEEeccc
Confidence 998421 123334332 221 11 122433334444444554 457999999988666556667776641
Q ss_pred ------------CCceEEeCCCceEEecC
Q 044198 156 ------------PGEYCHITPKTEIFCEG 172 (772)
Q Consensus 156 ------------~~~~~~~~~~t~i~~~~ 172 (772)
+...++++++|.|.+..
T Consensus 163 ~~~~~~~~~~~~~~~~GiL~~~T~i~F~k 191 (211)
T 1qcs_A 163 ILKGEPASGKRQKIEVGLVVGNSQVAFEK 191 (211)
T ss_dssp TTC-------CCBCSEEECCTTCEEEEEE
T ss_pred ccccCcccccCCCcceeEEcCCcEEEEEE
Confidence 12468999999987643
No 196
>1cr5_A SEC18P (residues 22 - 210); double-PSI beta barrel, vesicle fusion, endocytosis/exocytosis complex; 2.30A {Saccharomyces cerevisiae} SCOP: b.52.2.3 d.31.1.1
Probab=98.45 E-value=3.2e-06 Score=82.08 Aligned_cols=149 Identities=11% Similarity=0.031 Sum_probs=100.6
Q ss_pred EEEecccCC---CCcEEEECHhhHhhcCCCCCCeEEEeecCcceEEEEEEeCCCCCCCeEEEcHHHHhhcCCCCCCeEEE
Q 044198 12 LIVEEALQD---DNSVVGLHPLTMEKLDIFKYDTILIKGKRRRNTICTAVDDDTCDASKIRMNKVVRSNLRLRLGDLVSV 88 (772)
Q Consensus 12 ~~v~~~~~~---~~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~v~v 88 (772)
++|...... -.+++|+||++.. .+-+|.|.+ ..|+.+.+++.+++|.|.++..+|+|+++.+||.|+|
T Consensus 8 l~v~~~P~~~la~TN~~~vsp~Df~-----~~~~v~v~~----~fVft~~~~~~i~~G~I~ls~~QR~wa~lsl~~~v~V 78 (189)
T 1cr5_A 8 LKVSNCPNNSYALANVAAVSPNDFP-----NNIYIIIDN----LFVFTTRHSNDIPPGTIGFNGNQRTWGGWSLNQDVQA 78 (189)
T ss_dssp EEEEECCCHHHHTTTEEEECTTTSC-----SSCEEEETT----TEEEEEEECTTSCTTEEEECHHHHHHHTCCTTCEEEE
T ss_pred EEEEeCCChhhhhcceEEECHHHcC-----CCceEEEcC----cEEEEEecCCCCCCCEEecCHHHHHhhcccCCCeEEE
Confidence 677666553 3789999999986 234777732 3688899999999999999999999999999999999
Q ss_pred EEccCC------CCCceeEee--ccc--cc-ccCcchhhHHHHHHHhhhcCCcCccCCcEEEEecCceeEEEEEEEecC-
Q 044198 89 KICNDV------VNATKMHVL--PLH--DT-IEGITGNLFDVYLKPYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEP- 156 (772)
Q Consensus 89 ~~~~~~------~~~~~v~~~--~~~--~~-~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~- 156 (772)
+++... .....+.+. ... .. ...+..+.+...++..|. ..++++|+.+.+...+..+.++|.+++.
T Consensus 79 ~~y~p~~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~--~Qift~gQ~l~f~~~g~~l~l~V~~i~~~ 156 (189)
T 1cr5_A 79 KAFDLFKYSGKQSYLGSIDIDISFRARGKAVSTVFDQDELAKQFVRCYE--SQIFSPTQYLIMEFQGHFFDLKIRNVQAI 156 (189)
T ss_dssp EECCHHHHHTTCCEEEEEEEEEEECC-------CCCHHHHHHHHHHHHT--TCEECTTCEEEEEETTEEEEEEEEEEEEE
T ss_pred EEeCCccCCCCcceEEEEEEEEEehhcCCCCCCccCHHHHHHHHHHHHc--CCCCCCCCEEEEEECCcEEEEEEEEEEEe
Confidence 998321 223333332 121 11 122433334444444554 4579999999886665556667766421
Q ss_pred ---------------CceEEeCCCceEEec
Q 044198 157 ---------------GEYCHITPKTEIFCE 171 (772)
Q Consensus 157 ---------------~~~~~~~~~t~i~~~ 171 (772)
...++++++|.|.+.
T Consensus 157 d~~~~~~~~~~~~~~~~~GiL~~~T~i~F~ 186 (189)
T 1cr5_A 157 DLGDIEPTSAVATGIETKGILTKQTQINFF 186 (189)
T ss_dssp CTTSSSCSSCCBCSTTCCEECCTTCEEEEE
T ss_pred ccccccccCcCCCCccceEEEcCCcEEEEE
Confidence 236888888887754
No 197
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.45 E-value=1e-07 Score=100.86 Aligned_cols=70 Identities=23% Similarity=0.376 Sum_probs=47.5
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhC----CcEEEEecccchhcccccc-hHHHHHHHHHHHhCCCeEEEEcCchhh
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQ----ANFISIKGPELLTMWFGES-EANVRDVFDKARQSAPCVLFFDELDSI 567 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~----~~~i~v~~~~l~~~~vg~s-e~~i~~vf~~a~~~~p~ilfiDEid~l 567 (772)
..+++|+||||||||+||+++|..+. .+++.+..++++..+.+.. .......+..... +.+|||||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKN--VPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHT--SSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 57899999999999999999998654 7788888888766543321 1112222333332 359999999654
No 198
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.41 E-value=1.7e-06 Score=98.71 Aligned_cols=76 Identities=21% Similarity=0.282 Sum_probs=50.3
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhc------ccc----------------------cc
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM------WFG----------------------ES 540 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~------~vg----------------------~s 540 (772)
++.+...++|.||||+|||+|++.++... +.+.+.+...+-... ..| ..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 55666779999999999999999999764 334455543321000 000 11
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcCchhh
Q 044198 541 EANVRDVFDKARQSAPCVLFFDELDSI 567 (772)
Q Consensus 541 e~~i~~vf~~a~~~~p~ilfiDEid~l 567 (772)
....+.+...+....|.++++|=+..+
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~L 383 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSAL 383 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHH
Confidence 345566777777788999999965555
No 199
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.40 E-value=1.8e-06 Score=94.39 Aligned_cols=120 Identities=24% Similarity=0.370 Sum_probs=75.3
Q ss_pred cccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CeEEEEechhhhhhc---
Q 044198 190 DVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETG---CYFLCINGPEIMSKM--- 263 (772)
Q Consensus 190 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~---~~~~~v~~~~~~~~~--- 263 (772)
.+.|....++++.+.+.. +. ....+|+|+|++|||||++|+++....+ .+|+.+||..+....
T Consensus 138 ~~ig~s~~m~~l~~~i~~----------~a-~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~ 206 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKK----------IS-CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEA 206 (387)
T ss_dssp CCCCCSHHHHHHHHHHHH----------HT-TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHH
T ss_pred hhhhccHHhhHHHHHHHH----------hc-CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHH
Confidence 455556666666555543 11 2345699999999999999999998764 689999997653211
Q ss_pred ----------ccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc---------ccC
Q 044198 264 ----------AGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK---------SRA 324 (772)
Q Consensus 264 ----------~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~---------~~~ 324 (772)
.|.... ....|..+. ..+||+|||+.+.+ .+...|+..++... ...
T Consensus 207 elfg~~~g~~tga~~~-~~g~~~~a~---~gtlfldei~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~~ 271 (387)
T 1ny5_A 207 ELFGYEKGAFTGAVSS-KEGFFELAD---GGTLFLDEIGELSL-----------EAQAKLLRVIESGKFYRLGGRKEIEV 271 (387)
T ss_dssp HHHCBCTTSSTTCCSC-BCCHHHHTT---TSEEEEESGGGCCH-----------HHHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred HhcCCCCCCCCCcccc-cCCceeeCC---CcEEEEcChhhCCH-----------HHHHHHHHHHhcCcEEeCCCCceeec
Confidence 011000 112344333 35999999998853 33455666655321 124
Q ss_pred ceEEEEeeCCC
Q 044198 325 HVMVIGATNRP 335 (772)
Q Consensus 325 ~v~vI~atn~~ 335 (772)
++.+|+|||..
T Consensus 272 ~~rii~at~~~ 282 (387)
T 1ny5_A 272 NVRILAATNRN 282 (387)
T ss_dssp CCEEEEEESSC
T ss_pred cEEEEEeCCCC
Confidence 68899999975
No 200
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.40 E-value=3.1e-07 Score=99.70 Aligned_cols=167 Identities=22% Similarity=0.314 Sum_probs=99.4
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCc--EEEEecccchhc-----c--------cccchHHHHHHHHHHHhCCCeEEE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQAN--FISIKGPELLTM-----W--------FGESEANVRDVFDKARQSAPCVLF 560 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~--~i~v~~~~l~~~-----~--------vg~se~~i~~vf~~a~~~~p~ilf 560 (772)
...++++|++||||+++|+++....+.. |+.+++..+-.. . .|... .-...|+.|... +||
T Consensus 152 ~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~-~~~g~~~~a~~g---tlf 227 (368)
T 3dzd_A 152 KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALT-RKKGKLELADQG---TLF 227 (368)
T ss_dssp CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCC-CEECHHHHTTTS---EEE
T ss_pred chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCccc-ccCChHhhcCCC---eEE
Confidence 3459999999999999999999887543 999999865321 1 11111 112356666543 899
Q ss_pred EcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCC-----C----CCcEEEEeecCCC-------CCCCccccCCCCcc
Q 044198 561 FDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLS-----A----KKTVFVIGATNRP-------DMIDPALLRPGRLD 624 (772)
Q Consensus 561 iDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-----~----~~~v~vi~aTn~~-------~~ld~allrpgRf~ 624 (772)
||||+.+ ...++..||..|+... . .-++-+|+|||+. ..+.+.|.. |+.
T Consensus 228 ldei~~l-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~ 292 (368)
T 3dzd_A 228 LDEVGEL-------------DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLS 292 (368)
T ss_dssp EETGGGS-------------CHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHT
T ss_pred ecChhhC-------------CHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhC
Confidence 9999998 3567778888887431 1 1256789999963 122233333 444
Q ss_pred -ccccCCCCCH--HHHHHHHHHhhcc----CCCC-CcccHHHHHHHc-CCC--CHHHHHHHHHHHHHH
Q 044198 625 -QLIYIPLPDE--HSRLQIFKSCLRK----SPVS-KDIDLKAIAKYT-HGF--SGADITEICQRACKC 681 (772)
Q Consensus 625 -~~i~~~~p~~--~~r~~Il~~~~~~----~~~~-~~~~~~~la~~~-~g~--sg~di~~l~~~a~~~ 681 (772)
..|.+|+..+ ++...+++.++++ .... ..++-+.+.... ..| +-++++++++.|...
T Consensus 293 ~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 293 VFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp SEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHT
T ss_pred CeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 2455666544 4555555555533 2211 223333333322 223 348888888877643
No 201
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.39 E-value=1.9e-07 Score=101.04 Aligned_cols=120 Identities=20% Similarity=0.194 Sum_probs=77.4
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEecccccccc-
Q 044198 218 LGVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAP- 296 (772)
Q Consensus 218 ~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~- 296 (772)
+++.++..++|+||||||||||++++++.++..++.++.++- .....+..+| +..++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg~~~------q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELGVAI------DQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHGGGT------TCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHHHhc------chhHHHHHHHHHHHHH
Confidence 367788889999999999999999999998776655443221 0111222223 235789999998875
Q ss_pred CCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCC
Q 044198 297 KREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGV 356 (772)
Q Consensus 297 ~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~ 356 (772)
.+....+... .....+.+.++| .+.++.++|+++.+ +++.+++|++..+....
T Consensus 232 ~r~l~~~~~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLPSGQGI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCCCCSHH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HhhccccCcc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 2221111100 012344555554 35677889999999 78888889887655533
No 202
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.24 E-value=3.6e-07 Score=76.32 Aligned_cols=69 Identities=20% Similarity=0.348 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhccCCcccccchhHHHHHhcCCchhhHHHHHHHHHHHhhhhhccccccccchhhHhhhhhhhccchhhhh
Q 044198 360 VGRLEVLRIHTKNMKLAEDVNLETVARETHGFVGADLAALCTEGAMQCIREKMDLIDLEEDTIDAEVLSSMYVTNENLNA 439 (772)
Q Consensus 360 ~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 439 (772)
++|.+||+.+++++++..+++++.+|..|+||+|+||..+|++|++.++++.. ..++.+||..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~-----------------~~i~~~df~~ 63 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR-----------------YVILQSDLEE 63 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC-----------------SEECHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-----------------CCcCHHHHHH
Confidence 46899999999999988889999999999999999999999999999987642 3478899999
Q ss_pred hhhhcC
Q 044198 440 AVAITS 445 (772)
Q Consensus 440 al~~~~ 445 (772)
|+..+.
T Consensus 64 Al~~v~ 69 (82)
T 2dzn_B 64 AYATQV 69 (82)
T ss_dssp HHHTTC
T ss_pred HHHHHH
Confidence 998874
No 203
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=98.21 E-value=5.7e-06 Score=68.19 Aligned_cols=70 Identities=24% Similarity=0.327 Sum_probs=58.2
Q ss_pred CCceeEeecccccccCcchhhHHHHHHHhhhcCCcCccCCcEEEEecCceeEEEEEEEecCCceEEeCCCceEEec
Q 044198 96 NATKMHVLPLHDTIEGITGNLFDVYLKPYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGEYCHITPKTEIFCE 171 (772)
Q Consensus 96 ~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~t~i~~~ 171 (772)
.|++|+|+|... .. +.++ +..+++++|. ++||..||.|.+...++.+.|+|++++|. +++++++|.|.+.
T Consensus 11 ~A~kVvLAP~~~-i~-~~~~-~~~~lk~~L~--grPV~~GD~I~i~~~G~~i~F~Vv~t~P~-~V~Vt~~T~I~i~ 80 (83)
T 2jv2_A 11 IMSELKLKPLPK-VE-LPPD-FVDVIRIKLQ--GKTVRTGDVIGISILGKEVKFKVVQAYPS-PLRVEDRTKITLV 80 (83)
T ss_dssp CCCEEEEEESSS-CC-CCHH-HHHHHHHHHT--TSEECTTCEEEEEETTEEEEEEEEEEESS-SEECCTTSEEEEC
T ss_pred EEEEEEEcCCCc-ee-cCcc-HHHHHHHHHC--CCCccCCCEEEEeeCCCEEEEEEEEecCc-cEEECCCcEEEEE
Confidence 588999999852 22 3333 4679999998 69999999999875568899999999999 9999999999985
No 204
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.20 E-value=1e-06 Score=86.00 Aligned_cols=109 Identities=18% Similarity=0.251 Sum_probs=62.3
Q ss_pred CCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhcccccchHHHHHHHHHHHhCCCeEEEEcCchhhhhccC
Q 044198 493 MSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVLFFDELDSIAIQRG 572 (772)
Q Consensus 493 ~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~ 572 (772)
++...+++||||||||||++|.++|+.+....+.+..+. +.+ .++.... ..++++||+|.-.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f----------~l~~l~~--~kIiiLDEad~~~---- 116 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHF----------WLEPLTD--TKVAMLDDATTTC---- 116 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCG----------GGGGGTT--CSSEEEEEECHHH----
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chh----------hhcccCC--CCEEEEECCCchh----
Confidence 444567999999999999999999999865433221110 000 0111111 2499999998431
Q ss_pred CCCCCCCchhHHHHHHHHHhcCCC------CC-----CcEEEEeecCCCCCCCc---cccCCCCccccccCC
Q 044198 573 SSVGDGGGVDRIVNQLLTEMDGLS------AK-----KTVFVIGATNRPDMIDP---ALLRPGRLDQLIYIP 630 (772)
Q Consensus 573 ~~~~~~~~~~~~~~~lL~~ld~~~------~~-----~~v~vi~aTn~~~~ld~---allrpgRf~~~i~~~ 630 (772)
.+.+-..+-+.|||.. .. ..-.+|.|||.+-.-+. .+.+ |+. .+.|+
T Consensus 117 --------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~-~f~F~ 177 (212)
T 1tue_A 117 --------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RIT-VFEFP 177 (212)
T ss_dssp --------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCE-EEECC
T ss_pred --------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEE-EEEcC
Confidence 1223344566677741 11 13468889987433333 3444 665 55555
No 205
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.16 E-value=1.1e-05 Score=87.38 Aligned_cols=120 Identities=24% Similarity=0.438 Sum_probs=75.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhhhhhc----
Q 044198 190 DVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANETGCY--FLCINGPEIMSKM---- 263 (772)
Q Consensus 190 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~--~~~v~~~~~~~~~---- 263 (772)
.+.|....+.++.+.+...- .....+|++|++||||+++|+++....+.. |+.+||..+....
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a-----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA-----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH-----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhh-----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 46677776666665554211 224569999999999999999999887543 9999997653211
Q ss_pred ---------ccchHHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhccc---------ccCc
Q 044198 264 ---------AGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMK---------SRAH 325 (772)
Q Consensus 264 ---------~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~---------~~~~ 325 (772)
.|.... -...|+.+. ...||+|||+.+.+ .+...|+..++.-. ...+
T Consensus 199 lfg~~~g~~tga~~~-~~g~~~~a~---~gtlfldei~~l~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 263 (368)
T 3dzd_A 199 LFGHEKGAFTGALTR-KKGKLELAD---QGTLFLDEVGELDQ-----------RVQAKLLRVLETGSFTRLGGNQKIEVD 263 (368)
T ss_dssp HHEECSCSSSSCCCC-EECHHHHTT---TSEEEEETGGGSCH-----------HHHHHHHHHHHHSEECCBTCCCBEECC
T ss_pred hcCccccccCCcccc-cCChHhhcC---CCeEEecChhhCCH-----------HHHHHHHHHHHhCCcccCCCCcceeee
Confidence 000000 012344333 34899999998853 33456666665321 1236
Q ss_pred eEEEEeeCCC
Q 044198 326 VMVIGATNRP 335 (772)
Q Consensus 326 v~vI~atn~~ 335 (772)
+.+|++||..
T Consensus 264 ~rii~at~~~ 273 (368)
T 3dzd_A 264 IRVISATNKN 273 (368)
T ss_dssp CEEEEEESSC
T ss_pred eEEEEecCCC
Confidence 7899999864
No 206
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.14 E-value=1e-06 Score=93.19 Aligned_cols=70 Identities=21% Similarity=0.381 Sum_probs=46.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC----CeEEEEechhhhhhcccch-HHHHHHHHHHHHHcCCceEEecccccc
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETG----CYFLCINGPEIMSKMAGES-ESNLREAFNVAEKNAPSIIFIDEIDSI 294 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~----~~~~~v~~~~~~~~~~g~~-~~~l~~~f~~a~~~~p~il~iDEid~l 294 (772)
..+++|+||||||||+|+++++..+. .+++.++++++........ ...+...+.... .+.+|||||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 57899999999999999999998664 6778888887765432211 111122222222 3459999999654
No 207
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.12 E-value=4.8e-06 Score=81.19 Aligned_cols=111 Identities=13% Similarity=0.172 Sum_probs=62.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhhhcccchHHHHHHHHHHHHHcCCceEEeccccccccCCC
Q 044198 220 VKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMSKMAGESESNLREAFNVAEKNAPSIIFIDEIDSIAPKRE 299 (772)
Q Consensus 220 ~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~ 299 (772)
++..+++||+||||||||++|.++|+.+...++...... ..+ .++.+. ...++++||++.-
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f----------~l~~l~--~~kIiiLDEad~~----- 115 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHF----------WLEPLT--DTKVAMLDDATTT----- 115 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCG----------GGGGGT--TCSSEEEEEECHH-----
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chh----------hhcccC--CCCEEEEECCCch-----
Confidence 444567999999999999999999999865433221100 000 011111 1348999999732
Q ss_pred CCchhhHHHHHHHHHHHhhccc------cc-----CceEEEEeeCCC---CCCChhhhccCCceeEEEeCCC
Q 044198 300 KTHGEVEKRIVSQLLTLMDGMK------SR-----AHVMVIGATNRP---NSIDPALRRSGRFDKEIDIGVP 357 (772)
Q Consensus 300 ~~~~~~~~~v~~~L~~lld~~~------~~-----~~v~vI~atn~~---~~ld~al~r~gRf~~~i~i~~p 357 (772)
..+.+...+.+.+||.. .+ ....+|.|||.. +..-+.+.+ |+. .++++.|
T Consensus 116 -----~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~-~f~F~~~ 179 (212)
T 1tue_A 116 -----CWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RIT-VFEFPNA 179 (212)
T ss_dssp -----HHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCE-EEECCSC
T ss_pred -----hHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEE-EEEcCCC
Confidence 11223345677888742 11 123456688864 222245555 664 3566533
No 208
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.05 E-value=1.5e-05 Score=77.11 Aligned_cols=27 Identities=33% Similarity=0.527 Sum_probs=23.2
Q ss_pred ceEEeCCCCCchhHHHHHHHHHhCCcE
Q 044198 498 GVLFYGPPGCGKTLLAKAIANECQANF 524 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~~~~~ 524 (772)
.+.|.||||+|||||++.+++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 378999999999999999999886443
No 209
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=0.00013 Score=69.46 Aligned_cols=138 Identities=20% Similarity=0.226 Sum_probs=99.4
Q ss_pred CcEEEECHhhHhhcC---CCCCCeEEEeecC-cceEEEEEEeCCCCCCCeEEEcHHHHhhcCCCCCCeEEEEEccCCCCC
Q 044198 22 NSVVGLHPLTMEKLD---IFKYDTILIKGKR-RRNTICTAVDDDTCDASKIRMNKVVRSNLRLRLGDLVSVKICNDVVNA 97 (772)
Q Consensus 22 ~~~v~~~~~~~~~l~---~~~g~~v~i~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~v~v~~~~~~~~~ 97 (772)
.+.|.|.|+.|.+|. +.--=..+|+..+ .+.+.|-|.- -.-+++.|.|+.-++++++++.||.|+|+. ..+|.+
T Consensus 40 GdKI~LP~SaL~~L~~~~i~~Pm~F~l~n~~~~r~th~GVlE-FsA~EG~i~lP~wmm~~L~l~~gd~V~v~~-~~LPkg 117 (190)
T 2yuj_A 40 GGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLE-FVADEGICYLPHWMMQNLLLEEGGLVQVES-VNLQVA 117 (190)
T ss_dssp TTEEECCHHHHHHHHHTTCCSSCEEEEEETTTTEEEEEEEEE-CCCBTTBEECCSHHHHHHTCCTTEEEEEEE-ECCCCC
T ss_pred CCeEECcHHHHHHHHHCCCCcCeEEEEecCCCCceEEEEEEE-EecCCCeEEeCHHHHHhcCCCCCCEEEEEE-eecCCC
Confidence 669999999998873 3323355665532 2345554442 344679999999999999999999999996 579999
Q ss_pred ceeEeecccccccCcchhhHHHHHHHhhhcCCcCccCCcEEEEecCceeEEEEEEEecCCce-EEeCC
Q 044198 98 TKMHVLPLHDTIEGITGNLFDVYLKPYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGEY-CHITP 164 (772)
Q Consensus 98 ~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~-~~~~~ 164 (772)
+.|.+.|.+...-.++ -.++.|...+.+ +-.++.||+|.+..+.+...|+|++++|... ++++.
T Consensus 118 t~vklqP~~~~Fl~i~--npKavLE~~Lrn-fstLT~Gd~I~I~~~~~~y~l~V~e~kP~~aV~IidT 182 (190)
T 2yuj_A 118 TYSKFQPQSPDFLDIT--NPKAVLENALRN-FACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIEC 182 (190)
T ss_dssp SEEEEEESSHHHHHSS--CHHHHHHHHHTT-CCEECTTCEEEEESSSCEEEEEEEEESSSSSEECSSC
T ss_pred cEEEEEECCccccccc--cHHHHHHHHHhc-CcccccCCEEEEEeCCEEEEEEEEEEcCCCeEEEEeC
Confidence 9999999764321221 134455555553 4559999999999888889999999999743 34433
No 210
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.00017 Score=69.55 Aligned_cols=144 Identities=15% Similarity=0.195 Sum_probs=102.8
Q ss_pred CcEEEECHhhHhhcC---CCCCCeEEEeecC-cceEEEEEEeCCCCCCCeEEEcHHHHhhcCCCCCCeEEEEEccCCCCC
Q 044198 22 NSVVGLHPLTMEKLD---IFKYDTILIKGKR-RRNTICTAVDDDTCDASKIRMNKVVRSNLRLRLGDLVSVKICNDVVNA 97 (772)
Q Consensus 22 ~~~v~~~~~~~~~l~---~~~g~~v~i~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~v~v~~~~~~~~~ 97 (772)
.+.|.|.|+.|.+|. +.--=.-+|+... .+.+.|-|.- -.-++|.|.|+.-+++++++..||.|+|+. ..+|.+
T Consensus 45 GdKIiLP~SaL~~L~~~~i~~Pm~F~l~n~~~~~~th~GVlE-F~A~EG~v~lP~wmm~~L~l~~gd~V~i~~-~~LPkg 122 (208)
T 1zc1_A 45 GGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVTHGGVLE-FIAEEGRVYLPQWMMETLGIQPGSLLQISS-TDVPLG 122 (208)
T ss_dssp SSEEEECHHHHHHHHHTTCCSSCCEEEECTTTCCEEEEEEEE-ECCSSCEEEECHHHHHHHTCCTTCEEEEEE-EECCCC
T ss_pred CCeEECCHHHHHHHHHCCCCcCEEEEEEeCCCCCEEEEEEEE-EEcCCCeEEcCHHHHHhcCCCCCCEEEEEE-eEcCCC
Confidence 569999999998873 4333455665432 3345555541 234679999999999999999999999995 579999
Q ss_pred ceeEeecccccccCcchhhHHHHHHHhhhcCCcCccCCcEEEEecCceeEEEEEEEecCCc----eEEeCCCceEEe
Q 044198 98 TKMHVLPLHDTIEGITGNLFDVYLKPYFLGHYRPVRKGDLFLVRGGMRSVKFKVVDTEPGE----YCHITPKTEIFC 170 (772)
Q Consensus 98 ~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~----~~~~~~~t~i~~ 170 (772)
+.|.+.|.+.....++. .++.|...+.+ +-.++.||+|.+..+.+...|+|.+++|.. .+++..+-.+.+
T Consensus 123 t~vklqP~~~~Fldi~n--pKavLE~~LRn-fstLT~Gd~I~i~~~~~~y~l~V~e~kP~~~~~aV~IidTDleVDf 196 (208)
T 1zc1_A 123 QFVKLEPQSVDFLDISD--PKAVLENVLRN-FSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDF 196 (208)
T ss_dssp SEEEEECCHHHHHTSSC--HHHHHHHHHHH-CSCEESSSEEEEEETTEEEEEEEEEEECSSTTCEECCSSSCSEEEE
T ss_pred CEEEEeECccccccccC--HHHHHHHHhhc-CccccCCCEEEEEeCCEEEEEEEEEEcCCCCCceEEEEeCceEEEe
Confidence 99999997643222321 23344444442 556999999999988888999999999974 555555544444
No 211
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.98 E-value=7.6e-05 Score=72.01 Aligned_cols=26 Identities=38% Similarity=0.667 Sum_probs=23.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCe
Q 044198 225 GILLHGPPGTGKTLLARAIANETGCY 250 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~~~ 250 (772)
.+.|.||+|+|||||++.+++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999988643
No 212
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.89 E-value=1.8e-05 Score=86.54 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=69.3
Q ss_pred eEEEECCCCCcHHHHHHHH-HHHhCCeEEEEech-----hhhhhcccc--hHHHHHHHHHHHHHcCCceEEecccccccc
Q 044198 225 GILLHGPPGTGKTLLARAI-ANETGCYFLCINGP-----EIMSKMAGE--SESNLREAFNVAEKNAPSIIFIDEIDSIAP 296 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~l-a~~l~~~~~~v~~~-----~~~~~~~g~--~~~~l~~~f~~a~~~~p~il~iDEid~l~~ 296 (772)
+|||.|+||| ||++++++ ++.++...+ +.+. .+.....+. ..-.-+ .+..|. ..++|+||++.+.+
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~gLt~s~r~~tG~~~~~G-~l~LAd---gGvl~lDEIn~~~~ 314 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTDLTAVLKEDRGWALRAG-AAVLAD---GGILAVDHLEGAPE 314 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHHHSEEEEESSSEEEEEC-HHHHTT---TSEEEEECCTTCCH
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccCceEEEEcCCCcccCCC-eeEEcC---CCeeehHhhhhCCH
Confidence 7999999999 99999999 776655332 2221 111110000 000001 111222 35999999987642
Q ss_pred CCCCCchhhHHHHHHHHHHHhhcc-------cccCceEEEEeeCCCC-----------CCChhhhccCCceeEEE-eCCC
Q 044198 297 KREKTHGEVEKRIVSQLLTLMDGM-------KSRAHVMVIGATNRPN-----------SIDPALRRSGRFDKEID-IGVP 357 (772)
Q Consensus 297 ~~~~~~~~~~~~v~~~L~~lld~~-------~~~~~v~vI~atn~~~-----------~ld~al~r~gRf~~~i~-i~~p 357 (772)
.....|++.|+.. .-..++.||||+|+.. .|++++.. ||+..+. +..|
T Consensus 315 -----------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~p 381 (506)
T 3f8t_A 315 -----------PHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDP 381 (506)
T ss_dssp -----------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--
T ss_pred -----------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCC
Confidence 4456677777642 2235789999999975 78889988 9977543 4455
Q ss_pred CHHH
Q 044198 358 DEVG 361 (772)
Q Consensus 358 ~~~~ 361 (772)
+.+.
T Consensus 382 d~e~ 385 (506)
T 3f8t_A 382 RPGE 385 (506)
T ss_dssp ----
T ss_pred ChhH
Confidence 5443
No 213
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.81 E-value=1.4e-05 Score=81.57 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=25.0
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHhCC
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANECQA 522 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~~~ 522 (772)
++..+++||||||||||++|+++|+.+..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 34567999999999999999999997654
No 214
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.78 E-value=4.5e-05 Score=77.14 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=50.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH--h-------CCeEEEEechhh------hh--hccc----------------
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANE--T-------GCYFLCINGPEI------MS--KMAG---------------- 265 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~--l-------~~~~~~v~~~~~------~~--~~~g---------------- 265 (772)
|+.+..-++|+||||+|||||++.++.. + +...+++++.+. .. ...+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4566677999999999999999999985 3 345677766441 00 0000
Q ss_pred chH---HHHHHHHHHHHHcCCceEEeccccccccC
Q 044198 266 ESE---SNLREAFNVAEKNAPSIIFIDEIDSIAPK 297 (772)
Q Consensus 266 ~~~---~~l~~~f~~a~~~~p~il~iDEid~l~~~ 297 (772)
... ..+..+.+......|.+++|||+..+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 011 11222334444567899999999987643
No 215
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.77 E-value=9e-05 Score=74.23 Aligned_cols=109 Identities=17% Similarity=0.271 Sum_probs=61.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechh----hhhh--cc-------------------------
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPE----IMSK--MA------------------------- 264 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~----~~~~--~~------------------------- 264 (772)
|+.+..-++|+||||+|||||++.++..+ +..++.++... +... ..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 35566779999999999999999999654 44555544321 1000 00
Q ss_pred -----cchHHHHHHHHHHHHHcCCc--eEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCC
Q 044198 265 -----GESESNLREAFNVAEKNAPS--IIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP 335 (772)
Q Consensus 265 -----g~~~~~l~~~f~~a~~~~p~--il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~ 335 (772)
.........+...+....|. ++++||+..+.... ......+...|..+. ...++.++.+++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d----~~~~~~~~~~l~~~~----~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK----PAMARKISYYLKRVL----NKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC----GGGHHHHHHHHHHHH----HHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC----HHHHHHHHHHHHHHH----HhCCCeEEEEeccC
Confidence 01122233344445556888 99999999875321 112233444444433 23356666666644
No 216
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.76 E-value=6.3e-05 Score=80.67 Aligned_cols=156 Identities=12% Similarity=0.071 Sum_probs=98.9
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHh---CC-cEEEEecccchhcccccchHHHHHHHHHHHh----CCCeEEEEcCchh
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANEC---QA-NFISIKGPELLTMWFGESEANVRDVFDKARQ----SAPCVLFFDELDS 566 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~---~~-~~i~v~~~~l~~~~vg~se~~i~~vf~~a~~----~~p~ilfiDEid~ 566 (772)
....+|||||+|.||++.++.++..+ +. ++..+. +-+ +..++++.+.+.. ....|+++||++.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-------IDP--NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-------CCT--TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-------ecC--CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 34569999999999999999998765 22 221111 111 2345666655542 3457999999987
Q ss_pred -hhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCC------CCCccccCCCCccccccCCCCCHHHHHH
Q 044198 567 -IAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPD------MIDPALLRPGRLDQLIYIPLPDEHSRLQ 639 (772)
Q Consensus 567 -l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~------~ld~allrpgRf~~~i~~~~p~~~~r~~ 639 (772)
+. ....+.|+..++...+ ..++|++++ .++ .+-+++.+ |+. ++.|.+++..+...
T Consensus 88 kl~-------------~~~~~aLl~~le~p~~-~~~~il~~~-~~~~~~~~~k~~~~i~s--r~~-~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 88 GPN-------------AAINEQLLTLTGLLHD-DLLLIVRGN-KLSKAQENAAWFTALAN--RSV-QVTCQTPEQAQLPR 149 (343)
T ss_dssp CCC-------------TTHHHHHHHHHTTCBT-TEEEEEEES-CCCTTTTTSHHHHHHTT--TCE-EEEECCCCTTHHHH
T ss_pred CCC-------------hHHHHHHHHHHhcCCC-CeEEEEEcC-CCChhhHhhHHHHHHHh--Cce-EEEeeCCCHHHHHH
Confidence 51 2356778999986432 344444444 332 34456665 774 78899999999998
Q ss_pred HHHHhhccCCCC-CcccHHHHHHHcCCCCHHHHHHHHHHH
Q 044198 640 IFKSCLRKSPVS-KDIDLKAIAKYTHGFSGADITEICQRA 678 (772)
Q Consensus 640 Il~~~~~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~a 678 (772)
.++..+++.++. ++..+..|++.+.| +-+++.+.+...
T Consensus 150 ~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl 188 (343)
T 1jr3_D 150 WVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERL 188 (343)
T ss_dssp HHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHH
Confidence 998888776654 33446666765544 444444444443
No 217
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.69 E-value=0.00014 Score=77.73 Aligned_cols=114 Identities=21% Similarity=0.339 Sum_probs=66.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh----------------cccchHHHHHHHHHHHH
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSK----------------MAGESESNLREAFNVAE 279 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~----------------~~g~~~~~l~~~f~~a~ 279 (772)
|+.+..-++|+||||||||||+..++..+ +..++++++...... .....+..+..+-....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 34556669999999999999999999865 456677776432110 01112222322222233
Q ss_pred HcCCceEEeccccccccCCC--CCchh----hHHHHHHHHHHHhhcccccCceEEEEee
Q 044198 280 KNAPSIIFIDEIDSIAPKRE--KTHGE----VEKRIVSQLLTLMDGMKSRAHVMVIGAT 332 (772)
Q Consensus 280 ~~~p~il~iDEid~l~~~~~--~~~~~----~~~~v~~~L~~lld~~~~~~~v~vI~at 332 (772)
...+.+++||.+..+.+... ...++ ...+.+.+++..+..+....++.+|.+.
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~in 195 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTN 195 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 46788999999988875211 00111 2234555555555555445556666543
No 218
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.69 E-value=6.2e-05 Score=74.84 Aligned_cols=40 Identities=25% Similarity=0.303 Sum_probs=32.7
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEeccc
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 531 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~ 531 (772)
|+++..-++|+||||+|||++++.+|...+.+.+.++..+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4666777999999999999999999986666777776654
No 219
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.67 E-value=8.2e-05 Score=79.65 Aligned_cols=116 Identities=23% Similarity=0.272 Sum_probs=70.4
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhc----ccc------------cchHHHHHHHHHHH
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM----WFG------------ESEANVRDVFDKAR 552 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~----~vg------------~se~~i~~vf~~a~ 552 (772)
|+++..-++|+||||+|||+|+..++..+ +.+.+.++..+.... .+| ..+..+..+....+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45566678999999999999999999764 556777777653221 011 11222322333334
Q ss_pred hCCCeEEEEcCchhhhhc-c-CCCCCCC--CchhHHHHHHHHHhcCCCCCCcEEEEeec
Q 044198 553 QSAPCVLFFDELDSIAIQ-R-GSSVGDG--GGVDRIVNQLLTEMDGLSAKKTVFVIGAT 607 (772)
Q Consensus 553 ~~~p~ilfiDEid~l~~~-r-~~~~~~~--~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 607 (772)
...|.++++|.+..+.+. . ....++. ....+.+.++|..|..+....++.||++.
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~in 195 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTN 195 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 567899999999988751 1 1111111 12356777887777766544555555543
No 220
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.67 E-value=2.9e-05 Score=78.61 Aligned_cols=118 Identities=15% Similarity=0.132 Sum_probs=63.8
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHH--h-------CCcEEEEecccchh--------ccccc---------------
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANE--C-------QANFISIKGPELLT--------MWFGE--------------- 539 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~--~-------~~~~i~v~~~~l~~--------~~vg~--------------- 539 (772)
|+++..-++|+||||+|||+|++.++.. . +...+.+++.+... ..+|.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4566677999999999999999999985 2 45677777655210 00111
Q ss_pred chH----HHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCch--hHHHHHHHHHhcCCCCCCcEEEEeecCCCC
Q 044198 540 SEA----NVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGV--DRIVNQLLTEMDGLSAKKTVFVIGATNRPD 611 (772)
Q Consensus 540 se~----~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~--~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 611 (772)
+.. .+..+.+......|.+|+|||+..+....-+ +..... .+.+..++..|..+....++.||.++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYS--GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC---------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 111 1223444455567899999999988643211 000112 112444444444332223456677665443
No 221
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.64 E-value=8.2e-05 Score=80.18 Aligned_cols=116 Identities=24% Similarity=0.283 Sum_probs=68.6
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhcc----ccc-----------c-hHHHHHHHHHHH
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMW----FGE-----------S-EANVRDVFDKAR 552 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~----vg~-----------s-e~~i~~vf~~a~ 552 (772)
|+++..-++|+||||+|||+||..+|... +.+.+.++...-...+ .|. + +..+..+....+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45667779999999999999999888654 5567777665432211 111 1 222222223334
Q ss_pred hCCCeEEEEcCchhhhhccCCC--CCCC--CchhHHHHHHHHHhcCCCCCCcEEEEeec
Q 044198 553 QSAPCVLFFDELDSIAIQRGSS--VGDG--GGVDRIVNQLLTEMDGLSAKKTVFVIGAT 607 (772)
Q Consensus 553 ~~~p~ilfiDEid~l~~~r~~~--~~~~--~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 607 (772)
...+++||||.+..+.+..... .++. +...+.+.+++..|..+....++.||++.
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 4678999999999997432111 0110 11235667777777655444556666654
No 222
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.62 E-value=5.9e-05 Score=75.61 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=28.0
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEe
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIK 528 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~ 528 (772)
|+.+...++|+||||+|||+|++.++... +.+.+.+.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45556678999999999999999999654 44554444
No 223
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.61 E-value=8.2e-05 Score=75.90 Aligned_cols=27 Identities=44% Similarity=0.548 Sum_probs=24.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGC 249 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~ 249 (772)
..+++|+||||||||+++++||+.++.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 457999999999999999999998654
No 224
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.61 E-value=0.00016 Score=73.27 Aligned_cols=114 Identities=22% Similarity=0.225 Sum_probs=65.7
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHH--HH--hCCcEEEEecccchhc------cccc----------------------
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIA--NE--CQANFISIKGPELLTM------WFGE---------------------- 539 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA--~~--~~~~~i~v~~~~l~~~------~vg~---------------------- 539 (772)
|+++..-+.|.||||+|||||++.++ .. .+...+.+...+.... .+|-
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 45667779999999999999999998 33 2444444444321100 0110
Q ss_pred --------------chHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEe
Q 044198 540 --------------SEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIG 605 (772)
Q Consensus 540 --------------se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 605 (772)
.+.....+........|.++++||.-++..... +.....+.+..++..+.. .+..||.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~----d~~~~~~~l~~l~~~l~~----~g~tii~ 177 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE----EERKIREVLLKLNTILLE----MGVTTIL 177 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS----SGGGHHHHHHHHHHHHHH----HCCEEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC----CHHHHHHHHHHHHHHHHH----CCCeEEE
Confidence 011122333344557889999999998875321 111234446666666642 2456777
Q ss_pred ecCCCCCC
Q 044198 606 ATNRPDMI 613 (772)
Q Consensus 606 aTn~~~~l 613 (772)
+|+..+..
T Consensus 178 vtH~~~~~ 185 (251)
T 2ehv_A 178 TTEAPDPQ 185 (251)
T ss_dssp EECCC---
T ss_pred EECCCCCC
Confidence 88776554
No 225
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.60 E-value=0.00017 Score=71.55 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=32.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEech
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGP 257 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~ 257 (772)
|+.+..-++|+||||+|||||++.++...+...++++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 466677799999999999999999998556677777654
No 226
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.58 E-value=9.2e-05 Score=74.12 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=25.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET 247 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l 247 (772)
|+.+..-+.|+||+|+|||||++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45666679999999999999999999854
No 227
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.57 E-value=4.9e-05 Score=81.58 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=65.4
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhc----cccc------------chHHHHHHHHHHH
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM----WFGE------------SEANVRDVFDKAR 552 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~----~vg~------------se~~i~~vf~~a~ 552 (772)
|+++..-++|+||||+|||+|+..++... +.+.+.++....... ..|- .++.+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45666779999999999999999988654 456666665442211 1121 1222222333344
Q ss_pred hCCCeEEEEcCchhhhhccC--CCCCCC--CchhHHHHHHHHHhcCCCCCCcEEEEeecC
Q 044198 553 QSAPCVLFFDELDSIAIQRG--SSVGDG--GGVDRIVNQLLTEMDGLSAKKTVFVIGATN 608 (772)
Q Consensus 553 ~~~p~ilfiDEid~l~~~r~--~~~~~~--~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn 608 (772)
...|.+|+||++..+..... ...++. +...+.+.+++..|.......++.||+++.
T Consensus 137 ~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh 196 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINE 196 (349)
T ss_dssp TTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred cCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 56789999999999873211 000111 112234556666654332223445555554
No 228
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.55 E-value=0.00013 Score=78.27 Aligned_cols=78 Identities=27% Similarity=0.372 Sum_probs=49.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh----hccc------------chHHHHHHHHHHHH
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMS----KMAG------------ESESNLREAFNVAE 279 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~----~~~g------------~~~~~l~~~f~~a~ 279 (772)
|+.+..-++|+||||+|||||+..++... +...++++...... ...| ..+..+..+.....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45556679999999999999999998654 45566666532111 0011 11222222222333
Q ss_pred HcCCceEEecccccccc
Q 044198 280 KNAPSIIFIDEIDSIAP 296 (772)
Q Consensus 280 ~~~p~il~iDEid~l~~ 296 (772)
...|.+++||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 45689999999999874
No 229
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.53 E-value=4.3e-05 Score=76.59 Aligned_cols=118 Identities=20% Similarity=0.189 Sum_probs=63.7
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHhC---------CcEEEEecccchhc--------ccccch-------------
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANECQ---------ANFISIKGPELLTM--------WFGESE------------- 541 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~~---------~~~i~v~~~~l~~~--------~vg~se------------- 541 (772)
|+.+..-+.|.||||+|||||++.++.... ...+.+++.+.... ..+-..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 100 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 100 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecC
Confidence 455666699999999999999999998542 23666665442110 001000
Q ss_pred ------HHHHHHHHHHH-----hCCCeEEEEcCchhhhhccCCCCCCCCchh--HHHHHHHHHhcCCCCCCcEEEEeecC
Q 044198 542 ------ANVRDVFDKAR-----QSAPCVLFFDELDSIAIQRGSSVGDGGGVD--RIVNQLLTEMDGLSAKKTVFVIGATN 608 (772)
Q Consensus 542 ------~~i~~vf~~a~-----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~--~~~~~lL~~ld~~~~~~~v~vi~aTn 608 (772)
..+..+..... ...|.++++||..+.......+ ...... +.+.+++..|..+....++.||.+|.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~--~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH 178 (231)
T 4a74_A 101 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIG--RGALAERQQKLAKHLADLHRLANLYDIAVFVTNQ 178 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCS--TTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCC--CcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEee
Confidence 01223333334 5678999999998876543221 000111 11233444443332223456777776
Q ss_pred CCC
Q 044198 609 RPD 611 (772)
Q Consensus 609 ~~~ 611 (772)
..+
T Consensus 179 ~~~ 181 (231)
T 4a74_A 179 VQA 181 (231)
T ss_dssp CC-
T ss_pred ccc
Confidence 433
No 230
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.53 E-value=0.00027 Score=71.60 Aligned_cols=38 Identities=29% Similarity=0.324 Sum_probs=28.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHH--HH--hCCeEEEEec
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIA--NE--TGCYFLCING 256 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la--~~--l~~~~~~v~~ 256 (772)
|+.+..-++|.||+|+|||||++.++ .. .+...+.+++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 45667779999999999999999998 43 2344444443
No 231
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.52 E-value=0.00032 Score=75.49 Aligned_cols=115 Identities=22% Similarity=0.364 Sum_probs=63.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhhh----ccc-----------chHHHHHHHHHH-HH
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMSK----MAG-----------ESESNLREAFNV-AE 279 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~~----~~g-----------~~~~~l~~~f~~-a~ 279 (772)
|+.+..-++|+||||+|||+|+..++... +..+++++....... ..+ .....+...+.. .+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45566679999999999999999888754 556677765321110 000 111222222322 23
Q ss_pred HcCCceEEeccccccccCCCCCc--hh----hHHHHHHHHHHHhhcccccCceEEEEeeC
Q 044198 280 KNAPSIIFIDEIDSIAPKREKTH--GE----VEKRIVSQLLTLMDGMKSRAHVMVIGATN 333 (772)
Q Consensus 280 ~~~p~il~iDEid~l~~~~~~~~--~~----~~~~v~~~L~~lld~~~~~~~v~vI~atn 333 (772)
...+.+|+||.+..+.+...... ++ ...+.+.+++..+..+....++.||.+..
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 35688999999999875322110 11 12233344444443333445666666543
No 232
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.51 E-value=0.00023 Score=76.20 Aligned_cols=116 Identities=18% Similarity=0.205 Sum_probs=63.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---------CCeEEEEechhh---------hhhcc---------------c
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET---------GCYFLCINGPEI---------MSKMA---------------G 265 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l---------~~~~~~v~~~~~---------~~~~~---------------g 265 (772)
|+.+..-++|+||||+|||+|+..++... +...++++.... ..... .
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 45666669999999999999999999863 446677765431 10000 0
Q ss_pred chH---HHHHHHHHHHHH--cCCceEEeccccccccCCCCCchhhHH--HHHHHHHHHhhcccccCceEEEEeeCC
Q 044198 266 ESE---SNLREAFNVAEK--NAPSIIFIDEIDSIAPKREKTHGEVEK--RIVSQLLTLMDGMKSRAHVMVIGATNR 334 (772)
Q Consensus 266 ~~~---~~l~~~f~~a~~--~~p~il~iDEid~l~~~~~~~~~~~~~--~v~~~L~~lld~~~~~~~v~vI~atn~ 334 (772)
..+ ..+..+...... ..+.+++||.+..+........++... ..+..++..+..+....++.||.+...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 011 112223334444 567899999999887432111112221 123333333333333445666655443
No 233
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.50 E-value=0.0001 Score=78.47 Aligned_cols=116 Identities=17% Similarity=0.196 Sum_probs=68.3
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh---------CCcEEEEecccchh--------ccccc---------------
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC---------QANFISIKGPELLT--------MWFGE--------------- 539 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~---------~~~~i~v~~~~l~~--------~~vg~--------------- 539 (772)
|+++..-++|+||||+|||+++..+|... +.+.+.++....+. ...|-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 56667779999999999999999999764 45667776654210 00111
Q ss_pred -ch---HHHHHHHHHHHh-CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeec
Q 044198 540 -SE---ANVRDVFDKARQ-SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGAT 607 (772)
Q Consensus 540 -se---~~i~~vf~~a~~-~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 607 (772)
.+ ..+..+....+. ..+.+|+||.+..+......+.++.......+.+++..|..+....++.||++.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 11 122334444555 678999999999997542111011000123466677666655434455566654
No 234
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.48 E-value=0.00016 Score=76.95 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=50.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---------CCeEEEEechhh---------hhhc------------c---c
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET---------GCYFLCINGPEI---------MSKM------------A---G 265 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l---------~~~~~~v~~~~~---------~~~~------------~---g 265 (772)
|+.+..-++|+||||+|||+|+..++... +...++++.... .... . .
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 56666779999999999999999999865 456677765431 0100 0 0
Q ss_pred chH---HHHHHHHHHHHH-cCCceEEecccccccc
Q 044198 266 ESE---SNLREAFNVAEK-NAPSIIFIDEIDSIAP 296 (772)
Q Consensus 266 ~~~---~~l~~~f~~a~~-~~p~il~iDEid~l~~ 296 (772)
..+ ..+..+...... ..+.+++||.+..+..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 011 122333344444 6688999999998864
No 235
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.44 E-value=0.0003 Score=75.48 Aligned_cols=78 Identities=21% Similarity=0.381 Sum_probs=50.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhhh----hccc-----------chHHHHHHHHHH-HH
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIMS----KMAG-----------ESESNLREAFNV-AE 279 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~~----~~~g-----------~~~~~l~~~f~~-a~ 279 (772)
|+.+..-++|+|+||+|||+||..++... +..+++++...... ...+ .....+..++.. .+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 35566779999999999999999988754 55677777622110 0000 112223333332 23
Q ss_pred HcCCceEEecccccccc
Q 044198 280 KNAPSIIFIDEIDSIAP 296 (772)
Q Consensus 280 ~~~p~il~iDEid~l~~ 296 (772)
...+.+++||.+..+.+
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 46788999999998875
No 236
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.44 E-value=0.00031 Score=67.32 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=30.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechh
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLCINGPE 258 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~ 258 (772)
+.-|+|+|+|||||||+++.|++.++.+++.++...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 346999999999999999999999998887766533
No 237
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.43 E-value=0.00024 Score=77.41 Aligned_cols=116 Identities=18% Similarity=0.213 Sum_probs=64.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---------CCeEEEEechhhhh--------hccc----------------
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET---------GCYFLCINGPEIMS--------KMAG---------------- 265 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l---------~~~~~~v~~~~~~~--------~~~g---------------- 265 (772)
|+.+..-++|+||||||||||++.++-.. +...+++++.+... ...+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56677779999999999999999776432 23467776643210 0001
Q ss_pred ch---HHHHHHHHHHHHHcCCceEEeccccccccCCCCCchhhH--HHHHHHHHHHhhcccccCceEEEEeeCC
Q 044198 266 ES---ESNLREAFNVAEKNAPSIIFIDEIDSIAPKREKTHGEVE--KRIVSQLLTLMDGMKSRAHVMVIGATNR 334 (772)
Q Consensus 266 ~~---~~~l~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~--~~v~~~L~~lld~~~~~~~v~vI~atn~ 334 (772)
.. ...+..+........|.+++||++..+........++.. .+.+..++..+..+....++.||.++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 00 112223333444567899999999888754322112221 2333455555554444445667666654
No 238
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.41 E-value=0.00021 Score=74.35 Aligned_cols=115 Identities=14% Similarity=0.232 Sum_probs=65.0
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh-----CCcEEEEecccchhc----ccccc--------hHHHHHH-H---HH
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPELLTM----WFGES--------EANVRDV-F---DK 550 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~-----~~~~i~v~~~~l~~~----~vg~s--------e~~i~~v-f---~~ 550 (772)
|+++. -++++||||+|||+|+-.++... +...+.++..+-+.. -+|-. +....++ + +.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45555 58999999999999987766543 456777777653321 11111 1112222 2 22
Q ss_pred ---HHhCCCeEEEEcCchhhhhccCCC--CCCC--C--chhHHHHHHHHHhcCCCCCCcEEEEeec
Q 044198 551 ---ARQSAPCVLFFDELDSIAIQRGSS--VGDG--G--GVDRIVNQLLTEMDGLSAKKTVFVIGAT 607 (772)
Q Consensus 551 ---a~~~~p~ilfiDEid~l~~~r~~~--~~~~--~--~~~~~~~~lL~~ld~~~~~~~v~vi~aT 607 (772)
.+...|.++++|-|.++.+...-. .++. + ...|.+++.|..|..+....++.+|.+-
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tN 169 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAIN 169 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 255679999999999997532111 0111 1 2456677777766555444455555443
No 239
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.41 E-value=0.00015 Score=77.70 Aligned_cols=115 Identities=19% Similarity=0.186 Sum_probs=67.3
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh---------CCcEEEEecccchh--------ccccc---------------
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC---------QANFISIKGPELLT--------MWFGE--------------- 539 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~---------~~~~i~v~~~~l~~--------~~vg~--------------- 539 (772)
|+++..-++|+||||+|||+++..+|... +.+.+.++....+. ...|.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 56666678999999999999999999863 44566766654211 00111
Q ss_pred -ch---HHHHHHHHHHHh--CCCeEEEEcCchhhhhccCCCCCCCCchh--HHHHHHHHHhcCCCCCCcEEEEeecC
Q 044198 540 -SE---ANVRDVFDKARQ--SAPCVLFFDELDSIAIQRGSSVGDGGGVD--RIVNQLLTEMDGLSAKKTVFVIGATN 608 (772)
Q Consensus 540 -se---~~i~~vf~~a~~--~~p~ilfiDEid~l~~~r~~~~~~~~~~~--~~~~~lL~~ld~~~~~~~v~vi~aTn 608 (772)
.+ ..+..+.+..+. ..+.+|+||.+..+....-.+ ..+..+ ..+.+++..|..+....++.||+++.
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~--~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG--RGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCG--GGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 11 112223344555 678999999999997542111 001122 23566666666554444556666554
No 240
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.40 E-value=0.00028 Score=75.76 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=31.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhC---------CeEEEEech
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANETG---------CYFLCINGP 257 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l~---------~~~~~v~~~ 257 (772)
++.+..-+.|+||||||||||++.++.... ...+++++.
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 556666799999999999999999999861 355777663
No 241
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.36 E-value=0.00015 Score=77.98 Aligned_cols=117 Identities=22% Similarity=0.339 Sum_probs=67.2
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchhc----cccc-----------chHHHHHHHH-HHH
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM----WFGE-----------SEANVRDVFD-KAR 552 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~----~vg~-----------se~~i~~vf~-~a~ 552 (772)
|+++..-++++||||+|||+||..+|... +.+.+.++..+.... ..|. +...+..+.+ ..+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 46667779999999999999999988664 567777776432211 1111 1222333333 234
Q ss_pred hCCCeEEEEcCchhhhhccC--CCCCCC--CchhHHHHHHHHHhcCCCCCCcEEEEeecC
Q 044198 553 QSAPCVLFFDELDSIAIQRG--SSVGDG--GGVDRIVNQLLTEMDGLSAKKTVFVIGATN 608 (772)
Q Consensus 553 ~~~p~ilfiDEid~l~~~r~--~~~~~~--~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn 608 (772)
...+.+|+||.+..+..... ...++. +...+.+.+++..|..+....++.||++..
T Consensus 139 ~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq 198 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 198 (356)
T ss_dssp HTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 56789999999999874211 000110 012245566666665443334556665543
No 242
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.34 E-value=0.00012 Score=79.87 Aligned_cols=118 Identities=14% Similarity=0.186 Sum_probs=66.3
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh---------CCcEEEEecccchhc--------ccccch-------------
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC---------QANFISIKGPELLTM--------WFGESE------------- 541 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~---------~~~~i~v~~~~l~~~--------~vg~se------------- 541 (772)
|+.+..-++|+||||||||+|++.++... +...+++++.+.+.. .+|-..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56677779999999999999999776332 234677776553111 111110
Q ss_pred ------HHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCC
Q 044198 542 ------ANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNR 609 (772)
Q Consensus 542 ------~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~ 609 (772)
..+..+........|.+|++|++-.+....-.+.++.+...+.+.+++..|..+....++.||+++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 11222333444567899999999887643211100001113344666666665544445667777654
No 243
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.34 E-value=0.0033 Score=72.43 Aligned_cols=166 Identities=13% Similarity=0.164 Sum_probs=89.3
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHH-------hCCeEEEEechh---
Q 044198 189 EDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANE-------TGCYFLCINGPE--- 258 (772)
Q Consensus 189 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~-------l~~~~~~v~~~~--- 258 (772)
..+.|.+..++.|.+.+...- ...+-|+|+||+|+|||+||+.++.. .....+.++...
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~-----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~ 192 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLK-----------GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDK 192 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTST-----------TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCH
T ss_pred CeecccHHHHHHHHHHHhccc-----------CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCch
Confidence 457899999999988875310 12456999999999999999998642 222233333211
Q ss_pred --hhhhc----------------ccchHHHHHHHHHH-HHH-cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhh
Q 044198 259 --IMSKM----------------AGESESNLREAFNV-AEK-NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMD 318 (772)
Q Consensus 259 --~~~~~----------------~g~~~~~l~~~f~~-a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld 318 (772)
+.... .......+...+.. ... ..|.+|++|+++.. ..+ +
T Consensus 193 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------------~~l----~ 252 (591)
T 1z6t_A 193 SGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------------WVL----K 252 (591)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------------HHH----H
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------------HHH----H
Confidence 11100 00111222222222 222 26889999999631 111 1
Q ss_pred cccccCceEEEEeeCCCCCCChhhhccCCceeEEEe---CCCCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCch
Q 044198 319 GMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDI---GVPDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVG 393 (772)
Q Consensus 319 ~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i---~~p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~ 393 (772)
.+ ..+..+|.||....... .. . ...+.+ ...+.++-.+++......-..........+++.+.|..-
T Consensus 253 ~l--~~~~~ilvTsR~~~~~~-~~--~---~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PL 322 (591)
T 1z6t_A 253 AF--DSQCQILLTTRDKSVTD-SV--M---GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPL 322 (591)
T ss_dssp TT--CSSCEEEEEESCGGGGT-TC--C---SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHH
T ss_pred Hh--cCCCeEEEECCCcHHHH-hc--C---CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcH
Confidence 12 22345666665432111 11 0 122333 356888888888876543111112245677888887754
No 244
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.33 E-value=0.00017 Score=77.36 Aligned_cols=118 Identities=20% Similarity=0.224 Sum_probs=66.3
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHhC---------CcEEEEecccchh-c--------------------cccc--
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANECQ---------ANFISIKGPELLT-M--------------------WFGE-- 539 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~~---------~~~i~v~~~~l~~-~--------------------~vg~-- 539 (772)
++++..-+.|+||||+|||+|++.++.... -..+.+++.+... . ++..
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~ 206 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 206 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecC
Confidence 566677799999999999999999998862 3457777654310 0 0100
Q ss_pred -ch---HHHHHHHHHHHh-----CCCeEEEEcCchhhhhccCCCCCCCCchh--HHHHHHHHHhcCCCCCCcEEEEeecC
Q 044198 540 -SE---ANVRDVFDKARQ-----SAPCVLFFDELDSIAIQRGSSVGDGGGVD--RIVNQLLTEMDGLSAKKTVFVIGATN 608 (772)
Q Consensus 540 -se---~~i~~vf~~a~~-----~~p~ilfiDEid~l~~~r~~~~~~~~~~~--~~~~~lL~~ld~~~~~~~v~vi~aTn 608 (772)
+. +.+..+-..... ..|.+|++||+-++......+ ...... ..+.+++..|..+....++.||.++.
T Consensus 207 ~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~--~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h 284 (349)
T 1pzn_A 207 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIG--RGALAERQQKLAKHLADLHRLANLYDIAVFVTNQ 284 (349)
T ss_dssp SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCS--TTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcc--cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcc
Confidence 00 112222222333 578999999999887542111 001111 23455555555443333456666665
Q ss_pred CCC
Q 044198 609 RPD 611 (772)
Q Consensus 609 ~~~ 611 (772)
...
T Consensus 285 ~~~ 287 (349)
T 1pzn_A 285 VQA 287 (349)
T ss_dssp CC-
T ss_pred ccc
Confidence 443
No 245
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.30 E-value=0.0006 Score=70.99 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=48.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCeEEEEechhhhh----hcc------------cchHHHHHHHHHH
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET-----GCYFLCINGPEIMS----KMA------------GESESNLREAFNV 277 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l-----~~~~~~v~~~~~~~----~~~------------g~~~~~l~~~f~~ 277 (772)
|+.+. -++|+||||+|||+|+..++... +...+++++..-.. ... ...+...-.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 34444 58999999999999987776543 56778887643211 000 1112220222222
Q ss_pred H---HHcCCceEEeccccccccC
Q 044198 278 A---EKNAPSIIFIDEIDSIAPK 297 (772)
Q Consensus 278 a---~~~~p~il~iDEid~l~~~ 297 (772)
+ +...|.+++||-+..+.+.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHhhccCceEEEEecccccccc
Confidence 2 3457899999999999753
No 246
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.25 E-value=0.00022 Score=69.99 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=28.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANETGCYFLCI 254 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v 254 (772)
.+++.|+|+|||||||||+++.|++.++..++..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 4556799999999999999999999999876543
No 247
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.23 E-value=0.00022 Score=73.23 Aligned_cols=79 Identities=23% Similarity=0.384 Sum_probs=48.0
Q ss_pred HHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhCC---eEEEEechhhh-----------hhcccchHHHHHHHHHHHH
Q 044198 214 IFKALGVKPPKGILLHGPPGTGKTLLARAIANETGC---YFLCINGPEIM-----------SKMAGESESNLREAFNVAE 279 (772)
Q Consensus 214 ~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~---~~~~v~~~~~~-----------~~~~g~~~~~l~~~f~~a~ 279 (772)
+++.+.+.+..-++|+||+|+||||+++++++.+.. --+.+++..+. ....+.....++..+..+-
T Consensus 16 vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL 95 (261)
T 2eyu_A 16 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL 95 (261)
T ss_dssp HHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHH
T ss_pred HHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHH
Confidence 334444455666999999999999999999987631 12333332110 0000101123455666666
Q ss_pred HcCCceEEecccc
Q 044198 280 KNAPSIIFIDEID 292 (772)
Q Consensus 280 ~~~p~il~iDEid 292 (772)
...|.++++||.-
T Consensus 96 ~~~p~illlDEp~ 108 (261)
T 2eyu_A 96 REDPDVIFVGEMR 108 (261)
T ss_dssp HHCCSEEEESCCC
T ss_pred hhCCCEEEeCCCC
Confidence 6789999999983
No 248
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.21 E-value=0.00051 Score=65.72 Aligned_cols=35 Identities=11% Similarity=0.283 Sum_probs=30.4
Q ss_pred CceEEeCCCCCchhHHHHHHHHHhCCcEEEEeccc
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 531 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~ 531 (772)
.-++|.|+||+||||++++++..++.+++.++..+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 45899999999999999999999998888766543
No 249
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.16 E-value=9.8e-05 Score=71.65 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=37.3
Q ss_pred ceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecc-c------chhcccccc-----hHHHHHHHHHHHhCCCeEEEEc
Q 044198 498 GVLFYGPPGCGKTLLAKAIANEC---QANFISIKGP-E------LLTMWFGES-----EANVRDVFDKARQSAPCVLFFD 562 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~-~------l~~~~vg~s-----e~~i~~vf~~a~~~~p~ilfiD 562 (772)
-.+++||+|+|||+++..++..+ +.+.+.+... + .+....|.. .....++++.+. ..+.+||||
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviID 83 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFID 83 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEEE
Confidence 47899999999999986666543 4554443221 0 000001100 011223333332 245799999
Q ss_pred Cchhh
Q 044198 563 ELDSI 567 (772)
Q Consensus 563 Eid~l 567 (772)
|+..+
T Consensus 84 E~Q~~ 88 (184)
T 2orw_A 84 EVQFF 88 (184)
T ss_dssp CGGGS
T ss_pred CcccC
Confidence 99886
No 250
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.16 E-value=0.0024 Score=64.29 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=28.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCING 256 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~ 256 (772)
|+.+..-++|+||||+|||+++..++... +...++++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 45667779999999999999988877543 445555554
No 251
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.15 E-value=0.0031 Score=72.64 Aligned_cols=168 Identities=14% Similarity=0.152 Sum_probs=88.7
Q ss_pred ccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh-----CC--cE--EEEeccc-
Q 044198 462 ADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC-----QA--NF--ISIKGPE- 531 (772)
Q Consensus 462 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~-----~~--~~--i~v~~~~- 531 (772)
..++|-+...+.|.+.+... -...+-++++||+|+|||+||+.++... .+ .. +.+...+
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~ 192 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDK 192 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCH
T ss_pred CeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCch
Confidence 34677777777776665421 1123458999999999999999987532 12 23 3333221
Q ss_pred --chhcc------cc----------cchHHHHHHHHH-HHh-CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHH
Q 044198 532 --LLTMW------FG----------ESEANVRDVFDK-ARQ-SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTE 591 (772)
Q Consensus 532 --l~~~~------vg----------~se~~i~~vf~~-a~~-~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ 591 (772)
++..+ ++ .....+...+.. ... ..|.+|+||+++... .+..
T Consensus 193 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-------------------~l~~ 253 (591)
T 1z6t_A 193 SGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-------------------VLKA 253 (591)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-------------------HHHT
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-------------------HHHH
Confidence 11111 11 111122222222 222 257899999996421 1222
Q ss_pred hcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCC
Q 044198 592 MDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFS 667 (772)
Q Consensus 592 ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~s 667 (772)
+ . .+..||.||..+..... .. |..-.+....+.+.++-.++|...+.............+++.++|..
T Consensus 254 l---~--~~~~ilvTsR~~~~~~~--~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 254 F---D--SQCQILLTTRDKSVTDS--VM-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp T---C--SSCEEEEEESCGGGGTT--CC-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred h---c--CCCeEEEECCCcHHHHh--cC-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 2 2 24466667765432211 11 11111111246788888999988775422122345678888888754
No 252
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.09 E-value=0.00036 Score=67.35 Aligned_cols=32 Identities=28% Similarity=0.251 Sum_probs=28.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLCI 254 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v 254 (772)
++.|+|+|||||||||+++.|++.++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45799999999999999999999999876653
No 253
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.09 E-value=0.00028 Score=68.42 Aligned_cols=40 Identities=30% Similarity=0.437 Sum_probs=32.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 044198 220 VKPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEI 259 (772)
Q Consensus 220 ~~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~ 259 (772)
+.++.-++|.|||||||||+++.|++..+...+.+++.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 4556679999999999999999999987666777776554
No 254
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.08 E-value=0.0053 Score=77.03 Aligned_cols=167 Identities=13% Similarity=0.134 Sum_probs=95.4
Q ss_pred ccccchHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh---C--C--cEEEEecccc--
Q 044198 462 ADIGGLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC---Q--A--NFISIKGPEL-- 532 (772)
Q Consensus 462 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~---~--~--~~i~v~~~~l-- 532 (772)
....|.+...+.|.+.+... -...+-+.|+|++|+|||+||+.++... . + ..+.+..+..
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 192 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK 192 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH
T ss_pred ceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc
Confidence 34677777777777665321 1223458899999999999999988652 1 2 2233433221
Q ss_pred ---h-------hcc---------cccchHHHHHHHHHHHhCC--CeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHH
Q 044198 533 ---L-------TMW---------FGESEANVRDVFDKARQSA--PCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTE 591 (772)
Q Consensus 533 ---~-------~~~---------vg~se~~i~~vf~~a~~~~--p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ 591 (772)
. ... .......+...+...-... +.+|+||+++... .
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~----------------------~ 250 (1249)
T 3sfz_A 193 SGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW----------------------V 250 (1249)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH----------------------H
T ss_pred hHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH----------------------H
Confidence 0 000 0111222333333332323 7899999997541 1
Q ss_pred hcCCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCC-CCHHHHHHHHHHhhccCCCCCcccHHHHHHHcCCCC
Q 044198 592 MDGLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPL-PDEHSRLQIFKSCLRKSPVSKDIDLKAIAKYTHGFS 667 (772)
Q Consensus 592 ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~-p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~s 667 (772)
++.+. .+.-||.||..+...... . .....+.+++ .+.++-.++|..+.....-.......++++.+.|..
T Consensus 251 ~~~~~--~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 251 LKAFD--NQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp HTTTC--SSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred HHhhc--CCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 22222 234677888766543221 1 2335677775 888888999988775443333344678888887764
No 255
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.08 E-value=0.0006 Score=69.94 Aligned_cols=75 Identities=20% Similarity=0.296 Sum_probs=47.5
Q ss_pred hcCCCCCCceEEeCCCCCchhHHHHHHHHHhC---CcEEEEecccc--h---------hcccccchHHHHHHHHHHHhCC
Q 044198 490 KFGMSPSRGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPEL--L---------TMWFGESEANVRDVFDKARQSA 555 (772)
Q Consensus 490 ~~~~~~~~~iLl~GppGtGKT~la~alA~~~~---~~~i~v~~~~l--~---------~~~vg~se~~i~~vf~~a~~~~ 555 (772)
.+.+.+..-++|.||+|+||||++++++.... ..-+.+.+..+ + ...+|......+..+..+-...
T Consensus 19 ~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~ 98 (261)
T 2eyu_A 19 ELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALRED 98 (261)
T ss_dssp HGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHC
T ss_pred HHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhC
Confidence 33345555689999999999999999998763 22333333221 0 0011212234566666666678
Q ss_pred CeEEEEcCc
Q 044198 556 PCVLFFDEL 564 (772)
Q Consensus 556 p~ilfiDEi 564 (772)
|.++++||.
T Consensus 99 p~illlDEp 107 (261)
T 2eyu_A 99 PDVIFVGEM 107 (261)
T ss_dssp CSEEEESCC
T ss_pred CCEEEeCCC
Confidence 999999997
No 256
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.07 E-value=0.00037 Score=68.33 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=29.2
Q ss_pred CCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEE
Q 044198 493 MSPSRGVLFYGPPGCGKTLLAKAIANECQANFISI 527 (772)
Q Consensus 493 ~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v 527 (772)
+.+...++|.|||||||||+++++|..++.+++..
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 34556799999999999999999999999887643
No 257
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.04 E-value=0.0005 Score=73.80 Aligned_cols=70 Identities=26% Similarity=0.436 Sum_probs=44.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC----CeEEEEech-hhh---------hhcccchHHHHHHHHHHHHHcCCceEEe
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETG----CYFLCINGP-EIM---------SKMAGESESNLREAFNVAEKNAPSIIFI 288 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~----~~~~~v~~~-~~~---------~~~~g~~~~~l~~~f~~a~~~~p~il~i 288 (772)
..-++|.||+||||||+++++++.++ ..++.+..+ ++. ....+.....+...+..+-.+.|.+|++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvill 202 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILV 202 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEec
Confidence 34599999999999999999998763 334433221 110 0001111122444666677789999999
Q ss_pred cccc
Q 044198 289 DEID 292 (772)
Q Consensus 289 DEid 292 (772)
||.-
T Consensus 203 DEp~ 206 (356)
T 3jvv_A 203 GEMR 206 (356)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9984
No 258
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.01 E-value=0.00051 Score=66.56 Aligned_cols=33 Identities=36% Similarity=0.535 Sum_probs=28.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
..+.-|+|.|+|||||||+++.|+..++..++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 345679999999999999999999999876554
No 259
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.00 E-value=0.0013 Score=67.06 Aligned_cols=39 Identities=36% Similarity=0.522 Sum_probs=32.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEI 259 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~ 259 (772)
..+..++|.|+|||||||+++.|++.++..++.+++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 445669999999999999999999999866677777554
No 260
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.96 E-value=0.00049 Score=72.98 Aligned_cols=116 Identities=15% Similarity=0.144 Sum_probs=65.7
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh---------------C----CcEEEEecccch--h---cc---ccc-----
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC---------------Q----ANFISIKGPELL--T---MW---FGE----- 539 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~---------------~----~~~i~v~~~~l~--~---~~---vg~----- 539 (772)
|+++..-++|+||||+|||++|..+|... + .+.+.++..+-+ . .+ .|-
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 55666678999999999999999998652 2 456666655421 0 00 111
Q ss_pred -----------chH---HHHHHHHHHHh-CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEE
Q 044198 540 -----------SEA---NVRDVFDKARQ-SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVI 604 (772)
Q Consensus 540 -----------se~---~i~~vf~~a~~-~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi 604 (772)
.+. .+..+.+..+. ..+.+|+||.+..+......+.++.......+.+++..|..+....++.||
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi 253 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVL 253 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 011 12233344444 567899999999997532111011000123456666666655444455666
Q ss_pred eec
Q 044198 605 GAT 607 (772)
Q Consensus 605 ~aT 607 (772)
++.
T Consensus 254 ~~n 256 (322)
T 2i1q_A 254 VTN 256 (322)
T ss_dssp EEE
T ss_pred EEC
Confidence 653
No 261
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.96 E-value=0.0012 Score=65.79 Aligned_cols=70 Identities=23% Similarity=0.225 Sum_probs=42.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechh-------hhhhcccch-----HHHHHHHHHHHHH----cCCce
Q 044198 225 GILLHGPPGTGKTLLARAIANET---GCYFLCINGPE-------IMSKMAGES-----ESNLREAFNVAEK----NAPSI 285 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~-------~~~~~~g~~-----~~~l~~~f~~a~~----~~p~i 285 (772)
-++++||+|+||||++..++..+ +..++.++... +.+. .|-. ......+++.+.. ..+.+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 37889999999999988887665 44555553221 1111 1100 0112345555444 34789
Q ss_pred EEeccccccc
Q 044198 286 IFIDEIDSIA 295 (772)
Q Consensus 286 l~iDEid~l~ 295 (772)
++|||+.++.
T Consensus 93 ViIDEaQ~l~ 102 (223)
T 2b8t_A 93 IGIDEVQFFD 102 (223)
T ss_dssp EEECSGGGSC
T ss_pred EEEecCccCc
Confidence 9999998763
No 262
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.96 E-value=0.00056 Score=65.12 Aligned_cols=29 Identities=34% Similarity=0.667 Sum_probs=25.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 044198 224 KGILLHGPPGTGKTLLARAIANETGCYFL 252 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l~~~~~ 252 (772)
..|.|+|||||||||+++.|++.++..++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 46999999999999999999999987443
No 263
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.94 E-value=0.00097 Score=70.66 Aligned_cols=28 Identities=21% Similarity=0.289 Sum_probs=24.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANE 246 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~ 246 (772)
|+.+..-++|+||||+|||+++..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4556667999999999999999999875
No 264
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.93 E-value=0.00056 Score=65.91 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=28.4
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCcEEEE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQANFISI 527 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~~i~v 527 (772)
+..++|.|||||||||+++.+|..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45699999999999999999999999888753
No 265
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.92 E-value=0.0046 Score=59.89 Aligned_cols=101 Identities=20% Similarity=0.225 Sum_probs=63.7
Q ss_pred CceEEeCCCCCchhHHHHHHHHHh---CCcEEEE---ecc------cchhcccc------------c------chHHHHH
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANEC---QANFISI---KGP------ELLTMWFG------------E------SEANVRD 546 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~---~~~~i~v---~~~------~l~~~~vg------------~------se~~i~~ 546 (772)
..+++|+++|.||||+|-.+|-.. |..+..+ ++. +++..+ + . .+...+.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L-~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH-GVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG-TCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC-CcEEEEcccccccCCCCcHHHHHHHHH
Confidence 458999999999999999998664 5666555 431 233332 1 0 1234556
Q ss_pred HHHHHHh----CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCC
Q 044198 547 VFDKARQ----SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRP 610 (772)
Q Consensus 547 vf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 610 (772)
.+..+++ ...++|++||+-......--+ .++++..+..- ..+.-||.|+|.+
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~----------~~ev~~~l~~R--p~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLP----------LEEVISALNAR--PGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSC----------HHHHHHHHHTS--CTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCC----------HHHHHHHHHhC--cCCCEEEEECCCC
Confidence 6666654 346899999997765443221 33466666643 3355677888764
No 266
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.92 E-value=0.00042 Score=67.18 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=33.4
Q ss_pred CCCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccc
Q 044198 493 MSPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 532 (772)
Q Consensus 493 ~~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l 532 (772)
+.++..+.|.||||+||||+++.++...+.+.+.+++.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3445568999999999999999999988778888877664
No 267
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.92 E-value=0.0068 Score=76.05 Aligned_cols=168 Identities=13% Similarity=0.100 Sum_probs=93.2
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHh---C----CeEEEEechh---
Q 044198 189 EDVGGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIANET---G----CYFLCINGPE--- 258 (772)
Q Consensus 189 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l---~----~~~~~v~~~~--- 258 (772)
..+.|.++.+++|.+.+...- ...+-|.|+|+.|+|||+||+.++... . ..++.++...
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~-----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 192 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLN-----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK 192 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTT-----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH
T ss_pred ceeccHHHHHHHHHHHHhhcc-----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc
Confidence 458899999999998875321 224568999999999999999887642 1 2233444322
Q ss_pred --hh-------hh---------cccchHHHHHHHHHHHHHcC--CceEEeccccccccCCCCCchhhHHHHHHHHHHHhh
Q 044198 259 --IM-------SK---------MAGESESNLREAFNVAEKNA--PSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMD 318 (772)
Q Consensus 259 --~~-------~~---------~~g~~~~~l~~~f~~a~~~~--p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld 318 (772)
.. .. ........+...+....... +.+|++|+++.. .++ .
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~----------------~~~----~ 252 (1249)
T 3sfz_A 193 SGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----------------WVL----K 252 (1249)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH----------------HHH----T
T ss_pred hHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH----------------HHH----H
Confidence 00 00 00111222333333333333 789999999732 111 1
Q ss_pred cccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCC-CCHHHHHHHHHHHhccCCcccccchhHHHHHhcCCch
Q 044198 319 GMKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGV-PDEVGRLEVLRIHTKNMKLAEDVNLETVARETHGFVG 393 (772)
Q Consensus 319 ~~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~-p~~~~r~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~ 393 (772)
.+. .+..||.||......... . .-...+.++. .+.++-.+++..+.............++++.+.|..-
T Consensus 253 ~~~--~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPL 322 (1249)
T 3sfz_A 253 AFD--NQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPL 322 (1249)
T ss_dssp TTC--SSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHH
T ss_pred hhc--CCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHH
Confidence 121 234566677654322111 1 2234467775 7888888888876533222222235667777777653
No 268
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.91 E-value=0.001 Score=71.33 Aligned_cols=99 Identities=19% Similarity=0.321 Sum_probs=61.5
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhC----CcEEEEecc-cchh---------cccccchHHHHHHHHHHHhCCCeEEE
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQ----ANFISIKGP-ELLT---------MWFGESEANVRDVFDKARQSAPCVLF 560 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~----~~~i~v~~~-~l~~---------~~vg~se~~i~~vf~~a~~~~p~ilf 560 (772)
+...+++.||+|+||||+.+++++... ...+.+.-+ ++.. ..++.........+..|-...|.+|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 344589999999999999999998763 333333211 1110 01222223456677788888999999
Q ss_pred EcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCC
Q 044198 561 FDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMI 613 (772)
Q Consensus 561 iDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~l 613 (772)
+||+-. ......+++.... +..|++++...+..
T Consensus 202 lDEp~d---------------~e~~~~~~~~~~~-----G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 202 VGEMRD---------------LETIRLALTAAET-----GHLVFGTLHTTSAA 234 (356)
T ss_dssp ESCCCS---------------HHHHHHHHHHHHT-----TCEEEEEESCSSHH
T ss_pred cCCCCC---------------HHHHHHHHHHHhc-----CCEEEEEEccChHH
Confidence 999831 2334444554431 34688888876544
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.91 E-value=0.00055 Score=64.92 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=27.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEEEe
Q 044198 225 GILLHGPPGTGKTLLARAIANETGCYFLCIN 255 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~~~~~~v~ 255 (772)
-|+|.|+|||||||+++.|++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4899999999999999999999998765544
No 270
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.90 E-value=0.003 Score=62.90 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=43.5
Q ss_pred ceEEeCCCCCchhHHHHHHHHHh---CCcEEEEeccc-------chhcccccch-----HHHHHHHHHHHh----CCCeE
Q 044198 498 GVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPE-------LLTMWFGESE-----ANVRDVFDKARQ----SAPCV 558 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~-------l~~~~vg~se-----~~i~~vf~~a~~----~~p~i 558 (772)
-++++||+|+||||++..++..+ +...+.++... +.+. .|... ....++++.+.. ..+.+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 36788999999999988887665 45555553221 2121 22210 122456666655 34789
Q ss_pred EEEcCchhh
Q 044198 559 LFFDELDSI 567 (772)
Q Consensus 559 lfiDEid~l 567 (772)
|+|||+..+
T Consensus 93 ViIDEaQ~l 101 (223)
T 2b8t_A 93 IGIDEVQFF 101 (223)
T ss_dssp EEECSGGGS
T ss_pred EEEecCccC
Confidence 999999875
No 271
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.89 E-value=0.0024 Score=64.39 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=28.5
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEec
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKG 529 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~ 529 (772)
|+.+..-++++||||+|||+++..+|... +.+.+.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 56667779999999999999988777543 455555544
No 272
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.88 E-value=0.00089 Score=64.25 Aligned_cols=32 Identities=38% Similarity=0.666 Sum_probs=27.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
.+..|+|+|+|||||||+++.++..++..++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 35569999999999999999999999876654
No 273
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.88 E-value=0.0027 Score=65.65 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=24.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET 247 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l 247 (772)
|+....-++|+||||+|||||+..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45566779999999999999999998754
No 274
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.88 E-value=0.00057 Score=66.07 Aligned_cols=31 Identities=48% Similarity=0.650 Sum_probs=26.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH-hCCeEEE
Q 044198 223 PKGILLHGPPGTGKTLLARAIANE-TGCYFLC 253 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~-l~~~~~~ 253 (772)
+..|+|+|+|||||||+++.|++. ++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 456999999999999999999998 6765543
No 275
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.87 E-value=0.014 Score=66.55 Aligned_cols=166 Identities=13% Similarity=0.124 Sum_probs=89.6
Q ss_pred cCcHHHHHHHHHHHHcccCChhHHHHhCCCCCceEEEECCCCCcHHHHHHHHHH----HhCCeE---EEEechh-----h
Q 044198 192 GGVRKQLGQIREVVELPLRHPQIFKALGVKPPKGILLHGPPGTGKTLLARAIAN----ETGCYF---LCINGPE-----I 259 (772)
Q Consensus 192 ~G~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~----~l~~~~---~~v~~~~-----~ 259 (772)
.|.++.+++|.+++... +-...+-|.|+|+.|+||||||+.+++ .....| ++++.+. .
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 39999999998887431 012245689999999999999999996 333222 3333222 1
Q ss_pred -------hhhccc-----------c-hHHHHHHHHHHHHHcC-CceEEeccccccccCCCCCchhhHHHHHHHHHHHhhc
Q 044198 260 -------MSKMAG-----------E-SESNLREAFNVAEKNA-PSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDG 319 (772)
Q Consensus 260 -------~~~~~g-----------~-~~~~l~~~f~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~ 319 (772)
...... + ....+...+...-... +.+|++|+++... .+ .+. ..
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~------------~~--~~~---~~ 263 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE------------TI--RWA---QE 263 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH------------HH--HHH---HH
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch------------hh--ccc---cc
Confidence 000000 0 1122333343333443 7899999997421 11 111 11
Q ss_pred ccccCceEEEEeeCCCCCCChhhhccCCceeEEEeCCCCHHHHHHHHHHHhccCCcccc--cchhHHHHHhcCCc
Q 044198 320 MKSRAHVMVIGATNRPNSIDPALRRSGRFDKEIDIGVPDEVGRLEVLRIHTKNMKLAED--VNLETVARETHGFV 392 (772)
Q Consensus 320 ~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~Il~~~~~~~~l~~~--~~l~~la~~t~g~~ 392 (772)
.+..||.||.... +... .+.....+.++..+.++-.+++..+......... .....+++.+.|..
T Consensus 264 ----~gs~ilvTTR~~~-v~~~---~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 264 ----LRLRCLVTTRDVE-ISNA---ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp ----TTCEEEEEESBGG-GGGG---CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred ----CCCEEEEEcCCHH-HHHH---cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 2344555665432 1111 1123456889999999999998877432221011 12345556666554
No 276
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.87 E-value=0.00069 Score=64.77 Aligned_cols=29 Identities=41% Similarity=0.583 Sum_probs=26.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 225 GILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
.|+|.|+|||||||+++.||+.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 59999999999999999999999976654
No 277
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.86 E-value=0.0042 Score=70.01 Aligned_cols=74 Identities=18% Similarity=0.319 Sum_probs=51.3
Q ss_pred eEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCC--CCCccccCCCCccccccCCCCCH
Q 044198 557 CVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPD--MIDPALLRPGRLDQLIYIPLPDE 634 (772)
Q Consensus 557 ~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~--~ld~allrpgRf~~~i~~~~p~~ 634 (772)
-+|+|||+..++...+. .....+..+.++ ...-++.+|.+|.+|. .|+..+.. -|..+|.+...+.
T Consensus 345 ivvVIDE~~~L~~~~~~------~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~ 412 (574)
T 2iut_A 345 IVVVVDEFADMMMIVGK------KVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSK 412 (574)
T ss_dssp EEEEESCCTTHHHHTCH------HHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCH
T ss_pred EEEEEeCHHHHhhhhhH------HHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCH
Confidence 58999999988754210 122223333332 3356899999999998 78777664 6778888888898
Q ss_pred HHHHHHHH
Q 044198 635 HSRLQIFK 642 (772)
Q Consensus 635 ~~r~~Il~ 642 (772)
.+...|+.
T Consensus 413 ~Dsr~ILd 420 (574)
T 2iut_A 413 IDSRTILD 420 (574)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88888874
No 278
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.84 E-value=0.00053 Score=65.50 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=18.9
Q ss_pred CCCceEEEECCCCCcHHHHHHH
Q 044198 221 KPPKGILLHGPPGTGKTLLARA 242 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~ 242 (772)
.++.-+.|+||+|||||||++.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4455699999999999999994
No 279
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.84 E-value=0.001 Score=68.89 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=24.1
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC 520 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~ 520 (772)
|+.+..-++|+||||+|||+|+..++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44556679999999999999999998644
No 280
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.83 E-value=0.0015 Score=70.29 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=24.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 044198 220 VKPPKGILLHGPPGTGKTLLARAIANETG 248 (772)
Q Consensus 220 ~~~~~~vLL~GppGtGKT~Lar~la~~l~ 248 (772)
+.+..-+.|.||+|||||||++.|++...
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 34456689999999999999999998653
No 281
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.83 E-value=0.00081 Score=63.76 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=27.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLCI 254 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v 254 (772)
...|+|.|++||||||+++.|++.++.+++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45799999999999999999999999877653
No 282
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.81 E-value=0.00074 Score=65.44 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=28.4
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
+.+.-++|.|+||+||||+++.++..++.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 345568999999999999999999999887665
No 283
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.81 E-value=0.0017 Score=72.46 Aligned_cols=96 Identities=22% Similarity=0.298 Sum_probs=54.7
Q ss_pred ceEEeCCCCCchhHHHHHHHHHh---CC-cEEEEecccc----hhcccccchHHHHHHHHHH----------------Hh
Q 044198 498 GVLFYGPPGCGKTLLAKAIANEC---QA-NFISIKGPEL----LTMWFGESEANVRDVFDKA----------------RQ 553 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~---~~-~~i~v~~~~l----~~~~vg~se~~i~~vf~~a----------------~~ 553 (772)
.+++.|+||||||+++.+++..+ +. ..+.+..+.- +....|.....+..++... ..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~ 126 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDL 126 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccc
Confidence 69999999999999999998776 32 3333322211 1111222222333333210 01
Q ss_pred CCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCC
Q 044198 554 SAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNR 609 (772)
Q Consensus 554 ~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~ 609 (772)
....++++||+..+ ....+..|+..+. ...++++++=.+.
T Consensus 127 ~~~~~iiiDE~~~~-------------~~~~~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 127 AKCRVLICDEVSMY-------------DRKLFKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp SSCSEEEESCGGGC-------------CHHHHHHHHHHSC---TTCEEEEEECTTS
T ss_pred cCCCEEEEECchhC-------------CHHHHHHHHHhcc---CCCEEEEECCHHH
Confidence 13469999999765 2345566666654 4456777775554
No 284
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.81 E-value=0.002 Score=71.76 Aligned_cols=23 Identities=35% Similarity=0.626 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh
Q 044198 225 GILLHGPPGTGKTLLARAIANET 247 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l 247 (772)
.++|.|+||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998876
No 285
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.79 E-value=0.00095 Score=72.19 Aligned_cols=79 Identities=22% Similarity=0.418 Sum_probs=48.3
Q ss_pred HHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHhC----CeEEEEech-hhh-hh---cccc-----hHHHHHHHHHHHH
Q 044198 214 IFKALGVKPPKGILLHGPPGTGKTLLARAIANETG----CYFLCINGP-EIM-SK---MAGE-----SESNLREAFNVAE 279 (772)
Q Consensus 214 ~~~~~~~~~~~~vLL~GppGtGKT~Lar~la~~l~----~~~~~v~~~-~~~-~~---~~g~-----~~~~l~~~f~~a~ 279 (772)
.++.+.+.+...++|+||+|+||||+++++++.+. ..++.+..+ +.. .. +..+ ....+...+..+.
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHT
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHh
Confidence 44555556666799999999999999999998763 333333321 000 00 0101 1112344555555
Q ss_pred HcCCceEEecccc
Q 044198 280 KNAPSIIFIDEID 292 (772)
Q Consensus 280 ~~~p~il~iDEid 292 (772)
...|.++++||+-
T Consensus 207 ~~~pd~illdE~~ 219 (372)
T 2ewv_A 207 REDPDVIFVGEMR 219 (372)
T ss_dssp TSCCSEEEESCCC
T ss_pred hhCcCEEEECCCC
Confidence 6789999999983
No 286
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.76 E-value=0.0019 Score=65.80 Aligned_cols=38 Identities=29% Similarity=0.487 Sum_probs=32.0
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccc
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 532 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l 532 (772)
.+..++|.||||+||||+++.++..++.+++.+++..+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34568999999999999999999999876777777665
No 287
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.75 E-value=0.0016 Score=70.13 Aligned_cols=28 Identities=39% Similarity=0.649 Sum_probs=23.8
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHhC
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANECQ 521 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~~ 521 (772)
.+..-+.|.||+|||||||.+++|+...
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 4455588999999999999999998763
No 288
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.75 E-value=0.007 Score=67.67 Aligned_cols=75 Identities=19% Similarity=0.344 Sum_probs=49.5
Q ss_pred Cc-eEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCC--CCChhhhccCCceeEEEeCCCCH
Q 044198 283 PS-IIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPN--SIDPALRRSGRFDKEIDIGVPDE 359 (772)
Q Consensus 283 p~-il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~--~ld~al~r~gRf~~~i~i~~p~~ 359 (772)
|. +++|||+..++... ...+.+.+..+...- ....+.+|.+|.++. .++..++. -|...|.+...+.
T Consensus 297 P~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~g-Ra~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~ 366 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV-------GKKVEELIARLAQKA-RAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSK 366 (512)
T ss_dssp CEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHHC-GGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSH
T ss_pred CcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHHh-hhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCH
Confidence 54 78999998776411 122233333332211 224677778888876 68888877 7888899999999
Q ss_pred HHHHHHHH
Q 044198 360 VGRLEVLR 367 (772)
Q Consensus 360 ~~r~~Il~ 367 (772)
.+...|+.
T Consensus 367 ~dsr~ilg 374 (512)
T 2ius_A 367 IDSRTILD 374 (512)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88887774
No 289
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.75 E-value=0.0008 Score=64.21 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=18.0
Q ss_pred CCCceEEeCCCCCchhHHHHH
Q 044198 495 PSRGVLFYGPPGCGKTLLAKA 515 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~a 515 (772)
++.-+.|.||||||||||+++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 445588999999999999994
No 290
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.74 E-value=0.0017 Score=66.64 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.4
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHh
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANEC 520 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~ 520 (772)
.+..-+.|.||+|+|||||++++++..
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 445568999999999999999999876
No 291
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.74 E-value=0.0025 Score=68.14 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=24.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Q 044198 220 VKPPKGILLHGPPGTGKTLLARAIANET 247 (772)
Q Consensus 220 ~~~~~~vLL~GppGtGKT~Lar~la~~l 247 (772)
+.+..-+.|.||+|+|||||+++|++..
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3455669999999999999999999865
No 292
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.74 E-value=0.011 Score=66.48 Aligned_cols=74 Identities=18% Similarity=0.294 Sum_probs=51.7
Q ss_pred ceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCC--CCChhhhccCCceeEEEeCCCCHHH
Q 044198 284 SIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPN--SIDPALRRSGRFDKEIDIGVPDEVG 361 (772)
Q Consensus 284 ~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~--~ld~al~r~gRf~~~i~i~~p~~~~ 361 (772)
.+++|||++.+..... +.+...|..+...- ....|.+|.+|.+|. .++..++. -|...|.+...+..+
T Consensus 345 ivvVIDE~~~L~~~~~-------~~~~~~L~~Iar~G-Ra~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~D 414 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-------KKVEELIARIAQKA-RAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKID 414 (574)
T ss_dssp EEEEESCCTTHHHHTC-------HHHHHHHHHHHHHC-TTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHH
T ss_pred EEEEEeCHHHHhhhhh-------HHHHHHHHHHHHHH-hhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHH
Confidence 4799999998864321 12333343333322 235688888998886 78988887 788889999998888
Q ss_pred HHHHHH
Q 044198 362 RLEVLR 367 (772)
Q Consensus 362 r~~Il~ 367 (772)
...||.
T Consensus 415 sr~ILd 420 (574)
T 2iut_A 415 SRTILD 420 (574)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 877764
No 293
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.73 E-value=0.00099 Score=64.15 Aligned_cols=29 Identities=34% Similarity=0.568 Sum_probs=26.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 225 GILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
.|+|+|+|||||||+++.|++.++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 49999999999999999999999987654
No 294
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.73 E-value=0.0047 Score=68.67 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=30.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh----CCeEEEEec
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET----GCYFLCING 256 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l----~~~~~~v~~ 256 (772)
|+.++.-++|.|+||+|||+|+..++..+ +.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 67777779999999999999999988754 445666553
No 295
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.72 E-value=0.0036 Score=64.07 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=30.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH---hCCeEEEEechhhh
Q 044198 223 PKGILLHGPPGTGKTLLARAIANE---TGCYFLCINGPEIM 260 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~---l~~~~~~v~~~~~~ 260 (772)
+.-|+|+|+|||||||+++.|+.. .+..++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 446999999999999999999997 67777766665443
No 296
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.71 E-value=0.0011 Score=62.91 Aligned_cols=29 Identities=28% Similarity=0.679 Sum_probs=25.8
Q ss_pred CceEEeCCCCCchhHHHHHHHHHhCCcEE
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANECQANFI 525 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~~~~~i 525 (772)
..+.|.|||||||||+++.+|..++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 45899999999999999999999987654
No 297
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.70 E-value=0.001 Score=63.78 Aligned_cols=32 Identities=34% Similarity=0.604 Sum_probs=28.0
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
.+..++|.|+||+||||+++.++..++.+++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 34569999999999999999999999887764
No 298
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.70 E-value=0.00012 Score=78.47 Aligned_cols=40 Identities=28% Similarity=0.419 Sum_probs=30.3
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhh
Q 044198 220 VKPPKGILLHGPPGTGKTLLARAIANETGCY--FLCINGPEI 259 (772)
Q Consensus 220 ~~~~~~vLL~GppGtGKT~Lar~la~~l~~~--~~~v~~~~~ 259 (772)
+.+..-+.|.||+|||||||+++|++..... -+.+++.++
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i 68 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTI 68 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 3445568999999999999999999976432 366666554
No 299
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.69 E-value=0.0018 Score=66.88 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=23.8
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHhC
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANECQ 521 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~~ 521 (772)
.+..-+.|.||+|+|||||++++++...
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4455589999999999999999998763
No 300
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.69 E-value=0.0043 Score=69.42 Aligned_cols=76 Identities=17% Similarity=0.324 Sum_probs=50.5
Q ss_pred Ce-EEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCC--CCCccccCCCCccccccCCCC
Q 044198 556 PC-VLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPD--MIDPALLRPGRLDQLIYIPLP 632 (772)
Q Consensus 556 p~-ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~--~ld~allrpgRf~~~i~~~~p 632 (772)
|. +++|||+..+.... ... +..++..+-.....-++.+|.+|.+|. .++..+.. -|..+|.+...
T Consensus 297 P~ivlvIDE~~~ll~~~---------~~~-~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~ 364 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV---------GKK-VEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVS 364 (512)
T ss_dssp CEEEEEEETHHHHHHHH---------HHH-HHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCS
T ss_pred CcEEEEEeCHHHHHhhh---------hHH-HHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcC
Confidence 54 89999998886421 111 223333332222234788899999987 57766654 67778888889
Q ss_pred CHHHHHHHHHH
Q 044198 633 DEHSRLQIFKS 643 (772)
Q Consensus 633 ~~~~r~~Il~~ 643 (772)
+..+...|+..
T Consensus 365 s~~dsr~ilg~ 375 (512)
T 2ius_A 365 SKIDSRTILDQ 375 (512)
T ss_dssp SHHHHHHHHSS
T ss_pred CHHHHHHhcCC
Confidence 99888888853
No 301
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.68 E-value=0.0015 Score=63.93 Aligned_cols=39 Identities=26% Similarity=0.378 Sum_probs=30.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhh
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEI 259 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~ 259 (772)
.++.-+.|.||+||||||+++.|++.+ +...+.+++.++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 345669999999999999999999988 444446665443
No 302
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.68 E-value=0.00099 Score=68.01 Aligned_cols=32 Identities=38% Similarity=0.468 Sum_probs=28.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEEEec
Q 044198 225 GILLHGPPGTGKTLLARAIANETGCYFLCING 256 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~ 256 (772)
-++|+||||||||||++.||+.++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999987776654
No 303
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.68 E-value=0.001 Score=62.96 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=26.6
Q ss_pred ceEEeCCCCCchhHHHHHHHHHhCCcEEEE
Q 044198 498 GVLFYGPPGCGKTLLAKAIANECQANFISI 527 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~~~~~i~v 527 (772)
-++|.|||||||||+++.++..++.+++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 32 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKG 32 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecC
Confidence 378999999999999999999999887643
No 304
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.68 E-value=0.00088 Score=64.69 Aligned_cols=31 Identities=35% Similarity=0.514 Sum_probs=26.6
Q ss_pred CCceEEeCCCCCchhHHHHHHHHH-hCCcEEE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANE-CQANFIS 526 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~-~~~~~i~ 526 (772)
+..++|.|+|||||||+++.+|.. ++++++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 456999999999999999999998 6766654
No 305
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.67 E-value=0.0015 Score=63.99 Aligned_cols=36 Identities=31% Similarity=0.567 Sum_probs=29.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEI 259 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~ 259 (772)
++.-+.|.||+||||||+++.|++.++. +.+++.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~--~~i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGL--EFAEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCC--EEEEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCC--eEEccccc
Confidence 3556999999999999999999999875 45555443
No 306
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.66 E-value=0.0011 Score=63.32 Aligned_cols=29 Identities=34% Similarity=0.635 Sum_probs=26.4
Q ss_pred ceEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 498 GVLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
.++|.|||||||||+++++|..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 48999999999999999999999987764
No 307
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.66 E-value=0.0015 Score=62.33 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=27.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEI 259 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~ 259 (772)
+..++|+||+|+||||+++.|++.++.. .+++.++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~--~i~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAA--FLDGDFL 42 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCE--EEEGGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcE--EEeCccc
Confidence 4459999999999999999999988764 4454443
No 308
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.66 E-value=0.0014 Score=68.20 Aligned_cols=38 Identities=39% Similarity=0.598 Sum_probs=30.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEI 259 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~ 259 (772)
.+.-++|+|||||||||+++.|+..++..++.+++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 34569999999999999999999988655677776444
No 309
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.65 E-value=0.0013 Score=63.63 Aligned_cols=31 Identities=19% Similarity=0.099 Sum_probs=22.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCeEEEE
Q 044198 224 KGILLHGPPGTGKTLLARAIANET---GCYFLCI 254 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v 254 (772)
.-++++||+|+||||++..++..+ +...+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 347899999999999986665543 4444443
No 310
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.65 E-value=0.0015 Score=64.89 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=27.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
+..|+|.|+|||||||+++.|++.++..++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 4569999999999999999999999875544
No 311
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.64 E-value=0.0012 Score=69.52 Aligned_cols=36 Identities=31% Similarity=0.529 Sum_probs=31.0
Q ss_pred CceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccc
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 532 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l 532 (772)
..++|.||+|||||++++.+|..++..++.++.-.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv 41 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALI 41 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh
Confidence 358999999999999999999999988888766544
No 312
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.64 E-value=0.0012 Score=63.58 Aligned_cols=29 Identities=38% Similarity=0.655 Sum_probs=25.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 044198 224 KGILLHGPPGTGKTLLARAIANETGCYFL 252 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l~~~~~ 252 (772)
..|+|.|+|||||||+++.|++.++.+++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 45899999999999999999999986543
No 313
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.64 E-value=0.0014 Score=62.25 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=26.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 224 KGILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
..|+|+|+|||||||+++.|++.++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999976554
No 314
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.64 E-value=0.0024 Score=65.57 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=23.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Q 044198 220 VKPPKGILLHGPPGTGKTLLARAIANET 247 (772)
Q Consensus 220 ~~~~~~vLL~GppGtGKT~Lar~la~~l 247 (772)
+.+..-+.|.||+|+|||||++.+++.+
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3455669999999999999999999865
No 315
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.64 E-value=0.0015 Score=68.22 Aligned_cols=111 Identities=15% Similarity=0.227 Sum_probs=0.0
Q ss_pred cCCCCCCceEEeCCCCCchhHHHHHHHHHh----CCcEEEEecccchhccccc---------------------------
Q 044198 491 FGMSPSRGVLFYGPPGCGKTLLAKAIANEC----QANFISIKGPELLTMWFGE--------------------------- 539 (772)
Q Consensus 491 ~~~~~~~~iLl~GppGtGKT~la~alA~~~----~~~~i~v~~~~l~~~~vg~--------------------------- 539 (772)
.++.+..-++|.||||+|||+|++.+|... +.+.+.+....-...+...
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~ 109 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFD 109 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHH
Q ss_pred ------------------chHHHHHHHHHH----HhCCCeEEEEcCchhhhhccCCCCCCCCchh-HHHHHHHHHhcCCC
Q 044198 540 ------------------SEANVRDVFDKA----RQSAPCVLFFDELDSIAIQRGSSVGDGGGVD-RIVNQLLTEMDGLS 596 (772)
Q Consensus 540 ------------------se~~i~~vf~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~-~~~~~lL~~ld~~~ 596 (772)
....+.++.+.+ ....|.+|++||...+....... .. ..+..++..|..+.
T Consensus 110 ~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~------d~~~~~~~i~~~L~~la 183 (296)
T 1cr0_A 110 QWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGES------DERKMIDNLMTKLKGFA 183 (296)
T ss_dssp HHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCC------CHHHHHHHHHHHHHHHH
Q ss_pred CCCcEEEEeec
Q 044198 597 AKKTVFVIGAT 607 (772)
Q Consensus 597 ~~~~v~vi~aT 607 (772)
...++.||++|
T Consensus 184 ~~~~~~vi~vs 194 (296)
T 1cr0_A 184 KSTGVVLVVIC 194 (296)
T ss_dssp HHHCCEEEEEE
T ss_pred HHhCCeEEEEE
No 316
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.64 E-value=0.0027 Score=67.79 Aligned_cols=28 Identities=36% Similarity=0.623 Sum_probs=23.8
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHhC
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANECQ 521 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~~ 521 (772)
.+..-+.|.||+|||||||.+++|+...
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 4455588999999999999999998763
No 317
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.63 E-value=0.0016 Score=63.71 Aligned_cols=31 Identities=35% Similarity=0.530 Sum_probs=26.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
+..|+|+|+|||||||+++.|++.++.+++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~ 50 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 3459999999999999999999999876544
No 318
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.62 E-value=0.0015 Score=63.44 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=27.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
+.-|+|.|+|||||||+++.|++.++.+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 4569999999999999999999999876544
No 319
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.61 E-value=0.0029 Score=67.63 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=24.3
Q ss_pred CCCCCceEEeCCCCCchhHHHHHHHHHhC
Q 044198 493 MSPSRGVLFYGPPGCGKTLLAKAIANECQ 521 (772)
Q Consensus 493 ~~~~~~iLl~GppGtGKT~la~alA~~~~ 521 (772)
+.+..-+.|.||+|+|||||.++++....
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 34555689999999999999999998763
No 320
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.61 E-value=0.0014 Score=62.08 Aligned_cols=28 Identities=36% Similarity=0.672 Sum_probs=24.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 225 GILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
-|+|+|||||||||+++.| ..++.+++.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 4899999999999999999 888877654
No 321
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.61 E-value=0.0014 Score=64.10 Aligned_cols=31 Identities=35% Similarity=0.618 Sum_probs=26.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
+.-|+|+|++||||||+++.|++.++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 3469999999999999999999999865543
No 322
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.61 E-value=0.0016 Score=70.39 Aligned_cols=78 Identities=21% Similarity=0.345 Sum_probs=48.4
Q ss_pred HhhcCCCCCCceEEeCCCCCchhHHHHHHHHHhC----CcEEEEecc-cc-hhc---cccc-----chHHHHHHHHHHHh
Q 044198 488 FEKFGMSPSRGVLFYGPPGCGKTLLAKAIANECQ----ANFISIKGP-EL-LTM---WFGE-----SEANVRDVFDKARQ 553 (772)
Q Consensus 488 ~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~~----~~~i~v~~~-~l-~~~---~vg~-----se~~i~~vf~~a~~ 553 (772)
+..+.+.+...+++.||+|+||||++++++..+. ..++.+..+ ++ ... ++.+ .....+.....+-.
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR 207 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTT
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhh
Confidence 3444455566689999999999999999998763 223233211 11 000 1111 22234556666666
Q ss_pred CCCeEEEEcCch
Q 044198 554 SAPCVLFFDELD 565 (772)
Q Consensus 554 ~~p~ilfiDEid 565 (772)
..|.+|++||+-
T Consensus 208 ~~pd~illdE~~ 219 (372)
T 2ewv_A 208 EDPDVIFVGEMR 219 (372)
T ss_dssp SCCSEEEESCCC
T ss_pred hCcCEEEECCCC
Confidence 789999999983
No 323
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.60 E-value=0.0016 Score=63.01 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=26.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFL 252 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~ 252 (772)
+.-|+|.|+|||||||+++.|++.++.+++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 456999999999999999999999987654
No 324
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.58 E-value=0.0016 Score=74.47 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=24.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEE
Q 044198 223 PKGILLHGPPGTGKTLLARAIANET---GCYFLCI 254 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v 254 (772)
...++|+||||||||+++.+++..+ +..++..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3569999999999999999998765 4444433
No 325
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.58 E-value=0.012 Score=62.74 Aligned_cols=141 Identities=16% Similarity=0.157 Sum_probs=83.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh---CC-e--EEEEechhhhhhcccchHHHHHHHHHHHH----HcCCceEEeccc
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANET---GC-Y--FLCINGPEIMSKMAGESESNLREAFNVAE----KNAPSIIFIDEI 291 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l---~~-~--~~~v~~~~~~~~~~g~~~~~l~~~f~~a~----~~~p~il~iDEi 291 (772)
.+..+||+||+|.||++.++.+++.+ +. . .+.+++ ...++.+++.+. -....+++|||+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-----------NTDWNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-----------TCCHHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-----------CCCHHHHHHHhcCcCCccCCeEEEEECC
Confidence 35579999999999999999998865 21 2 122221 012333443332 244569999999
Q ss_pred cc-cccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCC------CCCChhhhccCCceeEEEeCCCCHHHHHH
Q 044198 292 DS-IAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRP------NSIDPALRRSGRFDKEIDIGVPDEVGRLE 364 (772)
Q Consensus 292 d~-l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~------~~ld~al~r~gRf~~~i~i~~p~~~~r~~ 364 (772)
+. +.. ...+.|+..++.... .+++|.+++.. ..+-+++.+ |. ..+++..++..+...
T Consensus 86 ~~kl~~-----------~~~~aLl~~le~p~~--~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 86 ENGPNA-----------AINEQLLTLTGLLHD--DLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPR 149 (343)
T ss_dssp SSCCCT-----------THHHHHHHHHTTCBT--TEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHH
T ss_pred CCCCCh-----------HHHHHHHHHHhcCCC--CeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHH
Confidence 87 532 123567777765432 34444444432 235567666 44 458899999888888
Q ss_pred HHHHHhccCCcc-cccchhHHHHHhc
Q 044198 365 VLRIHTKNMKLA-EDVNLETVARETH 389 (772)
Q Consensus 365 Il~~~~~~~~l~-~~~~l~~la~~t~ 389 (772)
.++..++...+. +...++.++..+.
T Consensus 150 ~l~~~~~~~g~~i~~~a~~~l~~~~~ 175 (343)
T 1jr3_D 150 WVAARAKQLNLELDDAANQVLCYCYE 175 (343)
T ss_dssp HHHHHHHHTTCEECHHHHHHHHHSST
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhc
Confidence 887766544332 1223455555443
No 326
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.58 E-value=0.0013 Score=75.36 Aligned_cols=97 Identities=23% Similarity=0.316 Sum_probs=54.3
Q ss_pred CceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccc----hhcccccchHHHHHHHHHH---------HhCCCeEEE
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPEL----LTMWFGESEANVRDVFDKA---------RQSAPCVLF 560 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l----~~~~vg~se~~i~~vf~~a---------~~~~p~ilf 560 (772)
..+++.||||||||+++.+++..+ +.+++.+..+.- +....|.....+..++... ......+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 458999999999999999998765 445444322211 1111122222333333111 011347999
Q ss_pred EcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCC
Q 044198 561 FDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNR 609 (772)
Q Consensus 561 iDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~ 609 (772)
+||+..+ ....+..|+..+ ....++++++-.+.
T Consensus 285 IDEasml-------------~~~~~~~Ll~~~---~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDEVSMM-------------GDALMLSLLAAV---PPGARVLLVGDTDQ 317 (574)
T ss_dssp ECCGGGC-------------CHHHHHHHHTTS---CTTCEEEEEECTTS
T ss_pred EcCccCC-------------CHHHHHHHHHhC---cCCCEEEEEecccc
Confidence 9999766 133444454433 44566777776654
No 327
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.56 E-value=0.0033 Score=63.43 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=28.2
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHH----hCCcEEEEec
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANE----CQANFISIKG 529 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~----~~~~~i~v~~ 529 (772)
|+++..-++++|+||+|||++|..+|.. .+.+.+.++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 5666777999999999999999876643 2555655543
No 328
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.56 E-value=0.0021 Score=61.55 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=30.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechh
Q 044198 223 PKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPE 258 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~ 258 (772)
+.-+.|.|++||||||+++.|++.+ +.+++.+++..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 4568999999999999999999987 88888777543
No 329
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.55 E-value=0.0038 Score=66.89 Aligned_cols=29 Identities=34% Similarity=0.447 Sum_probs=24.3
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 044198 220 VKPPKGILLHGPPGTGKTLLARAIANETG 248 (772)
Q Consensus 220 ~~~~~~vLL~GppGtGKT~Lar~la~~l~ 248 (772)
+....-+.|.||+|||||||++.|++...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 34455689999999999999999998653
No 330
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.54 E-value=0.0035 Score=67.12 Aligned_cols=28 Identities=36% Similarity=0.377 Sum_probs=23.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Q 044198 220 VKPPKGILLHGPPGTGKTLLARAIANET 247 (772)
Q Consensus 220 ~~~~~~vLL~GppGtGKT~Lar~la~~l 247 (772)
+.+..-+.|.||+|||||||++.|++..
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3445568999999999999999999865
No 331
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.54 E-value=0.0017 Score=62.49 Aligned_cols=29 Identities=21% Similarity=0.518 Sum_probs=26.5
Q ss_pred ceEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 498 GVLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
.++|.|+|||||||+|+.+|..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 48999999999999999999999988764
No 332
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.53 E-value=0.0041 Score=65.34 Aligned_cols=35 Identities=34% Similarity=0.580 Sum_probs=30.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechh
Q 044198 224 KGILLHGPPGTGKTLLARAIANETGCYFLCINGPE 258 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~ 258 (772)
..|+|+||+|||||+|++.||+.++..++.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 46999999999999999999999998777776543
No 333
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.52 E-value=0.0017 Score=64.96 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=27.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
.+..|+|.|+|||||||+++.|++.++..++.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 34679999999999999999999999876544
No 334
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.52 E-value=0.0021 Score=63.73 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=31.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhhh
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEIMS 261 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~~ 261 (772)
..++-|+|.|||||||+|.|+.|++.++.+ .++..+++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdllR 65 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLLR 65 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHHH
Confidence 445668999999999999999999999864 555555553
No 335
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.52 E-value=0.0012 Score=62.99 Aligned_cols=26 Identities=42% Similarity=0.584 Sum_probs=22.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHH-HhCC
Q 044198 224 KGILLHGPPGTGKTLLARAIAN-ETGC 249 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~-~l~~ 249 (772)
.-|+|.|+|||||||+++.|++ .++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~ 29 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGF 29 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCc
Confidence 4589999999999999999998 3443
No 336
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.52 E-value=0.0012 Score=63.35 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=22.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFL 252 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~ 252 (772)
+.-|+|.|+|||||||+++.|++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 346999999999999999999999998765
No 337
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.51 E-value=0.0017 Score=62.67 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=23.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Q 044198 224 KGILLHGPPGTGKTLLARAIANETG 248 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l~ 248 (772)
.-|+|.|+|||||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999887
No 338
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.51 E-value=0.0039 Score=63.82 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=30.3
Q ss_pred CceEEeCCCCCchhHHHHHHHHH---hCCcEEEEecccch
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANE---CQANFISIKGPELL 533 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~---~~~~~i~v~~~~l~ 533 (772)
.-++|.|+||+||||+|+.++.. .+.+++.++...+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 45899999999999999999988 67787766665543
No 339
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.51 E-value=0.0017 Score=61.51 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=27.5
Q ss_pred CceEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
..++|.|+|||||||+++.+|..++.+++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 458999999999999999999999998875
No 340
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.49 E-value=0.0022 Score=61.82 Aligned_cols=31 Identities=29% Similarity=0.534 Sum_probs=26.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
+.-|+|.|+|||||||+++.|++.++.+++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 4569999999999999999999999865543
No 341
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.49 E-value=0.025 Score=55.99 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=25.3
Q ss_pred CceEEeCCCCCchhHHHHHHHHHh---CCcEEEEec
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANEC---QANFISIKG 529 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~ 529 (772)
..+++.|+||+|||+++-.+|..+ |..++.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 358999999999999999888765 555544433
No 342
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.48 E-value=0.0016 Score=66.34 Aligned_cols=31 Identities=35% Similarity=0.492 Sum_probs=27.9
Q ss_pred eEEeCCCCCchhHHHHHHHHHhCCcEEEEec
Q 044198 499 VLFYGPPGCGKTLLAKAIANECQANFISIKG 529 (772)
Q Consensus 499 iLl~GppGtGKT~la~alA~~~~~~~i~v~~ 529 (772)
++|.|||||||||+|+.+|..++..++..+.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 7899999999999999999999988876654
No 343
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.48 E-value=0.0032 Score=67.29 Aligned_cols=28 Identities=36% Similarity=0.487 Sum_probs=23.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANETG 248 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l~ 248 (772)
.+..-+.|.||+|||||||++.|++...
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4456689999999999999999998653
No 344
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.47 E-value=0.0033 Score=67.14 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=23.7
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHhC
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANECQ 521 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~~ 521 (772)
.+..-+.|.||+|||||||.+++|+...
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3455588999999999999999998763
No 345
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.47 E-value=0.0024 Score=64.10 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=27.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
+..|+|.|+|||||||+++.|++.++..++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4569999999999999999999999876544
No 346
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.46 E-value=0.0036 Score=67.01 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=23.7
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHhC
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANECQ 521 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~~ 521 (772)
.+..-+.|.||+|||||||.+++|+...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 4455588999999999999999998763
No 347
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.46 E-value=0.0016 Score=64.65 Aligned_cols=40 Identities=20% Similarity=0.424 Sum_probs=31.2
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchhc
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 535 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~ 535 (772)
+.++-++|.||||+||+|.|+.+|..++.+. ++..+++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdllR~ 66 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLLRA 66 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHHHH
Confidence 4456688999999999999999999998654 455555543
No 348
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.45 E-value=0.0021 Score=62.44 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=26.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
+.-|+|+|+|||||||+++.|++.++..++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 4569999999999999999999999865443
No 349
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.45 E-value=0.0021 Score=60.71 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=25.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 225 GILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
.|+|.|+|||||||+++.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48999999999999999999999976654
No 350
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.45 E-value=0.0089 Score=65.55 Aligned_cols=71 Identities=13% Similarity=0.061 Sum_probs=46.5
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccc-------------------hhccccc-chHHHHHHHHHH
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPEL-------------------LTMWFGE-SEANVRDVFDKA 551 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l-------------------~~~~vg~-se~~i~~vf~~a 551 (772)
++.-+++.|+||+||||++..+|..+ +.....+.+.-+ +....+. ....++..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35668999999999999999999765 455554443211 0001111 223345667778
Q ss_pred HhCCCeEEEEcCch
Q 044198 552 RQSAPCVLFFDELD 565 (772)
Q Consensus 552 ~~~~p~ilfiDEid 565 (772)
+...+.++++|..-
T Consensus 179 ~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 179 KSKGVDIIIVDTAG 192 (443)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HhCCCCEEEEECCC
Confidence 77677899999873
No 351
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.45 E-value=0.0023 Score=64.76 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=27.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
.+..|+|.|||||||||+++.|++.++..++.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 45679999999999999999999999865443
No 352
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.45 E-value=0.0025 Score=67.75 Aligned_cols=72 Identities=25% Similarity=0.320 Sum_probs=50.9
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhC--CcEEEEecccchh-----c---ccccchHHHHHHHHHHHhCCCeEEEEcCc
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLT-----M---WFGESEANVRDVFDKARQSAPCVLFFDEL 564 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~--~~~i~v~~~~l~~-----~---~vg~se~~i~~vf~~a~~~~p~ilfiDEi 564 (772)
+...+++.||+|+|||||+++++.... ...+.+.+...+. . ++.......+..+..|-...|.+|++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 456699999999999999999998874 3456666543211 1 22112345666777887888999999997
Q ss_pred hh
Q 044198 565 DS 566 (772)
Q Consensus 565 d~ 566 (772)
-+
T Consensus 250 ~~ 251 (330)
T 2pt7_A 250 RS 251 (330)
T ss_dssp CS
T ss_pred Ch
Confidence 43
No 353
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.45 E-value=0.002 Score=64.06 Aligned_cols=31 Identities=29% Similarity=0.537 Sum_probs=27.2
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
+..++|.|+|||||||+++.+|..++.+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 4568999999999999999999999977654
No 354
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.44 E-value=0.0016 Score=66.21 Aligned_cols=31 Identities=29% Similarity=0.487 Sum_probs=27.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
...|.|+|++||||||+++.|++.++.+++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 4579999999999999999999999986654
No 355
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.44 E-value=0.002 Score=63.71 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=25.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 225 GILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
.|+|.|||||||||+++.|++.++..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIS 30 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEee
Confidence 48899999999999999999999876544
No 356
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.43 E-value=0.0019 Score=63.86 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=25.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q 044198 225 GILLHGPPGTGKTLLARAIANETGCYFLCI 254 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~~~~~~v 254 (772)
.|+|.|||||||||+++.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999988765443
No 357
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.42 E-value=0.0023 Score=62.61 Aligned_cols=31 Identities=39% Similarity=0.515 Sum_probs=27.1
Q ss_pred CceEEeCCCCCchhHHHHHHHHHhCCcEEEE
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANECQANFISI 527 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~~~~~i~v 527 (772)
..++|.|+|||||||+|+.++..++.+++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3589999999999999999999999876643
No 358
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.42 E-value=0.0033 Score=67.59 Aligned_cols=108 Identities=22% Similarity=0.272 Sum_probs=0.0
Q ss_pred hcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcE--EEEecccc-----------------------------------
Q 044198 490 KFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANF--ISIKGPEL----------------------------------- 532 (772)
Q Consensus 490 ~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~--i~v~~~~l----------------------------------- 532 (772)
.+.+.+..-+.|.||+|||||||.+++|+.....- +.+++.++
T Consensus 31 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~ 110 (372)
T 1v43_A 31 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKI 110 (372)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHh
Q ss_pred ------------------------hhccccc--chHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHH
Q 044198 533 ------------------------LTMWFGE--SEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVN 586 (772)
Q Consensus 533 ------------------------~~~~vg~--se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~ 586 (772)
..++.++ ..+.-|-.+.+|-...|.++++|| ..++-......
T Consensus 111 ~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE------------P~s~LD~~~r~ 178 (372)
T 1v43_A 111 KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE------------PLSNLDAKLRV 178 (372)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES------------TTTTSCHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC------------CCccCCHHHHH
Q ss_pred HHHHHhcCCCCCCcEEEEeecCC
Q 044198 587 QLLTEMDGLSAKKTVFVIGATNR 609 (772)
Q Consensus 587 ~lL~~ld~~~~~~~v~vi~aTn~ 609 (772)
+++..|..+....+..+|.+|..
T Consensus 179 ~l~~~l~~l~~~~g~tvi~vTHd 201 (372)
T 1v43_A 179 AMRAEIKKLQQKLKVTTIYVTHD 201 (372)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESC
T ss_pred HHHHHHHHHHHhCCCEEEEEeCC
No 359
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.42 E-value=0.0064 Score=61.21 Aligned_cols=37 Identities=30% Similarity=0.367 Sum_probs=27.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH----hCCeEEEEe
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANE----TGCYFLCIN 255 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~----l~~~~~~v~ 255 (772)
|+.+..-++|+|+||+|||++|..+|.. .+.++++++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 4556667999999999999999877643 255555554
No 360
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.40 E-value=0.0019 Score=64.37 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=25.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeE
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYF 251 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~ 251 (772)
+..|+|.|||||||||+++.|++.++..+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~ 33 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAH 33 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 45699999999999999999999998644
No 361
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.39 E-value=0.0023 Score=66.57 Aligned_cols=37 Identities=41% Similarity=0.555 Sum_probs=30.1
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccc
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 532 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l 532 (772)
+.-++|.||||+||||+++.++..+...++.|++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 4558999999999999999999988555677776444
No 362
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.38 E-value=0.0026 Score=62.16 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=26.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
+.-|+|+|+|||||||+++.|++.++..++.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 3459999999999999999999999875544
No 363
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.37 E-value=0.0021 Score=63.35 Aligned_cols=34 Identities=38% Similarity=0.610 Sum_probs=28.0
Q ss_pred eEEeCCCCCchhHHHHHHHHHhCCcEEEEecccchh
Q 044198 499 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 534 (772)
Q Consensus 499 iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~ 534 (772)
++|.||||+||+|.|+.+|..++.+.+ +..+++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdllR 36 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDILR 36 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHHH
Confidence 789999999999999999999987654 4455543
No 364
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.37 E-value=0.0021 Score=60.85 Aligned_cols=29 Identities=38% Similarity=0.565 Sum_probs=25.1
Q ss_pred ceEEeCCCCCchhHHHHHHHHHhCCcEEEE
Q 044198 498 GVLFYGPPGCGKTLLAKAIANECQANFISI 527 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~~~~~i~v 527 (772)
-++|.|||||||||+++.+ ..++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 3789999999999999999 8888876653
No 365
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.36 E-value=0.0024 Score=62.40 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=28.7
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccc
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 532 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l 532 (772)
++.-+.|.||||+||||++++++..++. +.+++.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~--~~i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGL--EFAEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCC--EEEEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCC--eEEccccc
Confidence 4556899999999999999999999865 44555554
No 366
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.36 E-value=0.0023 Score=60.73 Aligned_cols=29 Identities=24% Similarity=0.596 Sum_probs=26.3
Q ss_pred ceEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 498 GVLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
.++|.|+|||||||+++.+|..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 48999999999999999999999987664
No 367
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.35 E-value=0.0026 Score=62.69 Aligned_cols=34 Identities=35% Similarity=0.631 Sum_probs=27.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhhh
Q 044198 225 GILLHGPPGTGKTLLARAIANETGCYFLCINGPEIM 260 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~~ 260 (772)
-|+|.||||+||+|.|+.|++.++.+ .++..+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~--~istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFV--HISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE--EEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCe--EEcHHHHH
Confidence 37899999999999999999999875 45555554
No 368
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.35 E-value=0.014 Score=64.62 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=30.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh----CCeEEEEec
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET----GCYFLCING 256 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l----~~~~~~v~~ 256 (772)
|+.++.-++|.|+||+|||+++..+|... +.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 57777779999999999999999888653 445666654
No 369
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.34 E-value=0.0021 Score=61.82 Aligned_cols=29 Identities=38% Similarity=0.653 Sum_probs=25.5
Q ss_pred CceEEeCCCCCchhHHHHHHHHHhCCcEE
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANECQANFI 525 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~~~~~i 525 (772)
..++|.|+|||||||+++.+|..++.+++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 34899999999999999999999887654
No 370
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.34 E-value=0.0023 Score=62.00 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=27.7
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCcEEEE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQANFISI 527 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~~i~v 527 (772)
+.-++|.|+|||||||+++.+|..++.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45689999999999999999999998876643
No 371
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.33 E-value=0.0028 Score=61.99 Aligned_cols=31 Identities=32% Similarity=0.619 Sum_probs=27.0
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
+.-++|.|+||+||||+++.++..++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 3468999999999999999999999876654
No 372
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.32 E-value=0.019 Score=65.40 Aligned_cols=165 Identities=13% Similarity=0.120 Sum_probs=87.8
Q ss_pred chHHHHHHHhhhccccCCchHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHH----HhCCcE---EEEecccc------
Q 044198 466 GLDTVKRELQETVQYPVEHPEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIAN----ECQANF---ISIKGPEL------ 532 (772)
Q Consensus 466 g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~----~~~~~~---i~v~~~~l------ 532 (772)
|.+..++.|.+.+... +-...+.+.++|++|+|||+||+.+++ .....| +.++.++-
T Consensus 132 GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 7777777776655220 112245688999999999999999996 232222 22332221
Q ss_pred ------hhccccc------------chHHHHHHHHHHHhCC-CeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhc
Q 044198 533 ------LTMWFGE------------SEANVRDVFDKARQSA-PCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMD 593 (772)
Q Consensus 533 ------~~~~vg~------------se~~i~~vf~~a~~~~-p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld 593 (772)
+....+. ....+...+...-... +.+|+||+++... .+ .+ ...
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~--------------~~--~~-~~~- 263 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE--------------TI--RW-AQE- 263 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH--------------HH--HH-HHH-
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch--------------hh--cc-ccc-
Confidence 1111000 0112233333333343 7899999987641 11 11 111
Q ss_pred CCCCCCcEEEEeecCCCCCCCccccCCCCccccccCCCCCHHHHHHHHHHhhccCCCCCc--ccHHHHHHHcCCCC
Q 044198 594 GLSAKKTVFVIGATNRPDMIDPALLRPGRLDQLIYIPLPDEHSRLQIFKSCLRKSPVSKD--IDLKAIAKYTHGFS 667 (772)
Q Consensus 594 ~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~--~~~~~la~~~~g~s 667 (772)
.+.-||.||+....... . +-.+..+.+++.+.++-.++|..+.-..+...+ .....+++.+.|..
T Consensus 264 -----~gs~ilvTTR~~~v~~~--~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 264 -----LRLRCLVTTRDVEISNA--A--SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp -----TTCEEEEEESBGGGGGG--C--CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred -----CCCEEEEEcCCHHHHHH--c--CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 23457777775432211 1 113356888899999999999988533221111 12345566665543
No 373
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.32 E-value=0.0023 Score=61.88 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=26.2
Q ss_pred CceEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
.-++|.|+|||||||+++.++..++.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 458999999999999999999999876653
No 374
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.31 E-value=0.003 Score=62.84 Aligned_cols=29 Identities=34% Similarity=0.542 Sum_probs=25.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 044198 224 KGILLHGPPGTGKTLLARAIANETGCYFL 252 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l~~~~~ 252 (772)
..|.|.||+||||||+++.|++.++.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 46899999999999999999999986554
No 375
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.31 E-value=0.0029 Score=62.79 Aligned_cols=31 Identities=32% Similarity=0.515 Sum_probs=26.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCeEEEE
Q 044198 224 KGILLHGPPGTGKTLLARAIANETGCYFLCI 254 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l~~~~~~v 254 (772)
..|+|.|+|||||||+++.|++.++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4699999999999999999999998765543
No 376
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.31 E-value=0.018 Score=56.02 Aligned_cols=19 Identities=26% Similarity=0.308 Sum_probs=15.9
Q ss_pred CceEEeCCCCCchhHHHHH
Q 044198 497 RGVLFYGPPGCGKTLLAKA 515 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~a 515 (772)
+.+++.+|+|+|||..+-.
T Consensus 39 ~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5699999999999987443
No 377
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.31 E-value=0.00018 Score=74.35 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=29.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCe--EEEEechhh
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANETGCY--FLCINGPEI 259 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l~~~--~~~v~~~~~ 259 (772)
.+..-+.|.||+|+|||||++.|++.+... -+.+++.++
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i 72 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPI 72 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEEC
Confidence 445669999999999999999999976432 366666544
No 378
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.30 E-value=0.0021 Score=61.64 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=22.6
Q ss_pred CceEEeCCCCCchhHHHHHHHHHhCCcEE
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANECQANFI 525 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~~~~~i 525 (772)
.-++|.|+|||||||+++.++..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45899999999999999999999998876
No 379
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.29 E-value=0.0051 Score=60.05 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=29.8
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccc
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPEL 532 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l 532 (772)
.++.-+.|.||+||||||+++++|..+ +...+.+++.++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 345568899999999999999999988 444446666554
No 380
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.29 E-value=0.0023 Score=64.01 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=27.2
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
+.-++|.|+|||||||+++.+|..++.+++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 4568999999999999999999999877654
No 381
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.29 E-value=0.019 Score=60.43 Aligned_cols=38 Identities=24% Similarity=0.167 Sum_probs=29.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCING 256 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~ 256 (772)
|+.+..-++|.|+||+|||+++..+|... +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 57777779999999999999999998654 345666553
No 382
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.27 E-value=0.0024 Score=61.59 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=25.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCC---eEEEEec
Q 044198 225 GILLHGPPGTGKTLLARAIANETGC---YFLCING 256 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~~---~~~~v~~ 256 (772)
-|+|.|+|||||||+++.|++.++. .+..++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 4899999999999999999998862 3445543
No 383
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.27 E-value=0.0027 Score=60.47 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=27.6
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccc
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 532 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l 532 (772)
+..++|.||||+||||+++.++..++..+ +++.++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCccc
Confidence 34588999999999999999999887554 444443
No 384
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.26 E-value=0.003 Score=63.38 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=27.3
Q ss_pred CceEEeCCCCCchhHHHHHHHHHhCCcEEEE
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANECQANFISI 527 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~~~~~i~v 527 (772)
..++|.|+|||||||+++.+|..++.+++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4589999999999999999999999776653
No 385
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.26 E-value=0.008 Score=60.53 Aligned_cols=36 Identities=28% Similarity=0.237 Sum_probs=28.6
Q ss_pred ceEEeCCCCCchhHHHHHHHHHhCCcEEEEecc-cch
Q 044198 498 GVLFYGPPGCGKTLLAKAIANECQANFISIKGP-ELL 533 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~-~l~ 533 (772)
.++++||+|+|||.++.+++...+.+.+.+... ++.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~ 146 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHH
Confidence 489999999999999999998887766665544 443
No 386
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.25 E-value=0.0044 Score=66.06 Aligned_cols=108 Identities=21% Similarity=0.239 Sum_probs=0.0
Q ss_pred hcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcE--EEEecccc-----------------------------------
Q 044198 490 KFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANF--ISIKGPEL----------------------------------- 532 (772)
Q Consensus 490 ~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~--i~v~~~~l----------------------------------- 532 (772)
.+.+.+..-+.|.||+|||||||.+++|+.....- +.+++.++
T Consensus 20 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~ 99 (348)
T 3d31_A 20 SLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRM 99 (348)
T ss_dssp EEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHH
Q ss_pred ---------------------hhccccc--chHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHH
Q 044198 533 ---------------------LTMWFGE--SEANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLL 589 (772)
Q Consensus 533 ---------------------~~~~vg~--se~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL 589 (772)
..++.++ ..+.-|-.+.+|-...|.++++|| ..++-.......+.
T Consensus 100 ~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDE------------P~s~LD~~~~~~l~ 167 (348)
T 3d31_A 100 KKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDE------------PLSALDPRTQENAR 167 (348)
T ss_dssp HCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEES------------SSTTSCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC------------ccccCCHHHHHHHH
Q ss_pred HHhcCCCCCCcEEEEeecCC
Q 044198 590 TEMDGLSAKKTVFVIGATNR 609 (772)
Q Consensus 590 ~~ld~~~~~~~v~vi~aTn~ 609 (772)
..|..+....+..+|.+|..
T Consensus 168 ~~l~~l~~~~g~tii~vTHd 187 (348)
T 3d31_A 168 EMLSVLHKKNKLTVLHITHD 187 (348)
T ss_dssp HHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHHhcCCEEEEEeCC
No 387
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.25 E-value=0.0028 Score=61.12 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=26.8
Q ss_pred CceEEeCCCCCchhHHHHHHHHHhCCcEEEE
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANECQANFISI 527 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~~~~~i~v 527 (772)
.-++|.|+|||||||+++.++..++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 4589999999999999999999998766543
No 388
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.24 E-value=0.015 Score=60.56 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=22.6
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHh
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANEC 520 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~ 520 (772)
++..++|.||+|+||||++..+|..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45568999999999999999999765
No 389
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.24 E-value=0.009 Score=62.55 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=27.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANET---GCYFLCING 256 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~ 256 (772)
.++.-++|+||+|+||||++..+|..+ +..+..+++
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 345569999999999999999999876 444444443
No 390
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.23 E-value=0.0032 Score=63.75 Aligned_cols=29 Identities=31% Similarity=0.531 Sum_probs=25.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeE
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYF 251 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~ 251 (772)
+.-+.|.||+||||||+++.|++.++...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 56799999999999999999999887644
No 391
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.23 E-value=0.003 Score=61.52 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=25.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 225 GILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
.|.|.|++||||||+++.|++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 48899999999999999999999976543
No 392
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.23 E-value=0.0046 Score=68.79 Aligned_cols=38 Identities=26% Similarity=0.319 Sum_probs=30.0
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh----CCcEEEEec
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC----QANFISIKG 529 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~----~~~~i~v~~ 529 (772)
|+.++.-+++.|+||+|||+++..+|... +.+++.++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 67777789999999999999999888653 446665543
No 393
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.23 E-value=0.019 Score=62.93 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=47.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh----------h----------hcccchHHHHHHHHHHHH
Q 044198 223 PKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIM----------S----------KMAGESESNLREAFNVAE 279 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~----------~----------~~~g~~~~~l~~~f~~a~ 279 (772)
+.-|+++|++|+||||++..||..+ +..+..+.+.... . ....+....+...++.+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 5569999999999999999998766 4555555542110 0 011123344566777777
Q ss_pred HcCCceEEecccc
Q 044198 280 KNAPSIIFIDEID 292 (772)
Q Consensus 280 ~~~p~il~iDEid 292 (772)
.....+++||..-
T Consensus 180 ~~~~DvVIIDTaG 192 (443)
T 3dm5_A 180 SKGVDIIIVDTAG 192 (443)
T ss_dssp HTTCSEEEEECCC
T ss_pred hCCCCEEEEECCC
Confidence 7778899999774
No 394
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.23 E-value=0.0023 Score=63.45 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=27.2
Q ss_pred CceEEeCCCCCchhHHHHHHHHHhCCcEEEE
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANECQANFISI 527 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~~~~~i~v 527 (772)
..++|.|+|||||||+++.+|..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4589999999999999999999998776654
No 395
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.22 E-value=0.0026 Score=61.35 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.9
Q ss_pred CceEEeCCCCCchhHHHHHHHHHhC
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANECQ 521 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~~ 521 (772)
.-++|.|+|||||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999887
No 396
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.21 E-value=0.0028 Score=62.64 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=25.7
Q ss_pred eEEeCCCCCchhHHHHHHHHHhCCcEEEE
Q 044198 499 VLFYGPPGCGKTLLAKAIANECQANFISI 527 (772)
Q Consensus 499 iLl~GppGtGKT~la~alA~~~~~~~i~v 527 (772)
++|.||||+||||+|+.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999998776543
No 397
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.21 E-value=0.002 Score=68.43 Aligned_cols=30 Identities=23% Similarity=0.522 Sum_probs=26.8
Q ss_pred CceEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
..++|.||||+|||++++++|..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 358999999999999999999999888754
No 398
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.21 E-value=0.0033 Score=59.06 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=25.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET 247 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l 247 (772)
.+.+..-+.|.||.|+|||||++.+++.+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44555669999999999999999999987
No 399
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.21 E-value=0.0037 Score=60.35 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=26.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 044198 225 GILLHGPPGTGKTLLARAIANET---GCYFLCIN 255 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~ 255 (772)
-|.|.|++||||||+++.|++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 77776654
No 400
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.20 E-value=0.0032 Score=59.42 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=26.2
Q ss_pred ceEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 498 GVLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
.++|.|+|||||||+++.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 37899999999999999999999987764
No 401
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.19 E-value=0.0082 Score=58.04 Aligned_cols=67 Identities=24% Similarity=0.161 Sum_probs=41.3
Q ss_pred ceEEeCCCCCchh-HHHHHHHHHh--CCcEEEEecccchhccc-------ccc-----hHHHHHHHHHHHhCCCeEEEEc
Q 044198 498 GVLFYGPPGCGKT-LLAKAIANEC--QANFISIKGPELLTMWF-------GES-----EANVRDVFDKARQSAPCVLFFD 562 (772)
Q Consensus 498 ~iLl~GppGtGKT-~la~alA~~~--~~~~i~v~~~~l~~~~v-------g~s-----e~~i~~vf~~a~~~~p~ilfiD 562 (772)
=.++|||.|+||| .|.+++.+.. +...+.++.. +-.+|. |.. -....++++..+. ..+|+||
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~-~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~--~DvIlID 98 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRDVAQEALG--VAVIGID 98 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET-TCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHT--CSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc-cCccchhhhhhccCCcccceecCCHHHHHHhccC--CCEEEEE
Confidence 3688999999999 8899888654 5677777643 111111 100 0112233333332 4699999
Q ss_pred Cchhh
Q 044198 563 ELDSI 567 (772)
Q Consensus 563 Eid~l 567 (772)
|+..+
T Consensus 99 EaQFf 103 (195)
T 1w4r_A 99 EGQFF 103 (195)
T ss_dssp SGGGC
T ss_pred chhhh
Confidence 99988
No 402
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.18 E-value=0.0031 Score=62.36 Aligned_cols=29 Identities=31% Similarity=0.520 Sum_probs=25.7
Q ss_pred eEEeCCCCCchhHHHHHHHHHhCCcEEEE
Q 044198 499 VLFYGPPGCGKTLLAKAIANECQANFISI 527 (772)
Q Consensus 499 iLl~GppGtGKT~la~alA~~~~~~~i~v 527 (772)
++|.||||+||||+|+.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999998776543
No 403
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.16 E-value=0.0032 Score=62.25 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=25.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 225 GILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
.|+|.|+|||||||+++.|++.++..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~ 30 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS 30 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 48999999999999999999999875544
No 404
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.15 E-value=0.0038 Score=62.27 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=24.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 044198 225 GILLHGPPGTGKTLLARAIANETGCYFL 252 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~~~~~ 252 (772)
.|+|.|+|||||||+++.|++.++.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 29 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHI 29 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 4899999999999999999999986543
No 405
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.14 E-value=0.0013 Score=69.81 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=47.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC--eEEEEechhhhh-----h---cccchHHHHHHHHHHHHHcCCceEEeccc
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETGC--YFLCINGPEIMS-----K---MAGESESNLREAFNVAEKNAPSIIFIDEI 291 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~~--~~~~v~~~~~~~-----~---~~g~~~~~l~~~f~~a~~~~p~il~iDEi 291 (772)
+...++|.||+|+|||||++++++.+.. ..+.+++..... . +........+..+..+....|.++++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 3567999999999999999999998742 356666543211 0 11001123345555666778999999998
Q ss_pred c
Q 044198 292 D 292 (772)
Q Consensus 292 d 292 (772)
-
T Consensus 250 ~ 250 (330)
T 2pt7_A 250 R 250 (330)
T ss_dssp C
T ss_pred C
Confidence 5
No 406
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.14 E-value=0.0022 Score=61.14 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.6
Q ss_pred ceEEeCCCCCchhHHHHHHHH-HhCC
Q 044198 498 GVLFYGPPGCGKTLLAKAIAN-ECQA 522 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~-~~~~ 522 (772)
-++|.|+||+||||+|+.++. ..+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~~~ 29 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNPGF 29 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTE
T ss_pred EEEEecCCCCCHHHHHHHHHhhcCCc
Confidence 488999999999999999998 4443
No 407
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.13 E-value=0.0035 Score=63.47 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=27.5
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
++..++|.||||+||||+|+.++..++.+++.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 45569999999999999999999999876654
No 408
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.12 E-value=0.0033 Score=61.09 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=26.7
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
+.-++|.|+|||||||+++.++..++.+++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 3458999999999999999999999866554
No 409
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.10 E-value=0.0047 Score=61.90 Aligned_cols=30 Identities=33% Similarity=0.651 Sum_probs=26.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFL 252 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~ 252 (772)
+..+.|.|||||||||+++.|++.++..++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 456999999999999999999999987553
No 410
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.10 E-value=0.012 Score=59.31 Aligned_cols=33 Identities=33% Similarity=0.254 Sum_probs=26.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCeEEEEec
Q 044198 224 KGILLHGPPGTGKTLLARAIANETGCYFLCING 256 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~ 256 (772)
..++++||+|+|||.++..++...+...+.+..
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 359999999999999999998888666555543
No 411
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.10 E-value=0.0035 Score=60.01 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=30.5
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEeccc
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPE 531 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~ 531 (772)
+.-+.|.|++||||||+++.++..+ +.+++.+++..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 3458899999999999999999987 88888777544
No 412
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.10 E-value=0.0029 Score=62.99 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=26.7
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
+..++|.|||||||||+++.+|..++..++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4568999999999999999999999875543
No 413
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.10 E-value=0.0037 Score=61.10 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=23.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETG 248 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~ 248 (772)
++.-+.|.||+|||||||++.|++..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 455689999999999999999999864
No 414
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.09 E-value=0.0071 Score=64.77 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=23.7
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHhC
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANECQ 521 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~~ 521 (772)
.+..-+.|.||+|||||||.+++|+...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 4455588999999999999999998763
No 415
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.08 E-value=0.0038 Score=59.91 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=23.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETG 248 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~ 248 (772)
++-+.|+||+|+|||||++.|++...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45689999999999999999999764
No 416
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.08 E-value=0.0074 Score=72.31 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=56.7
Q ss_pred CCCCCceEEeCCCCCchhHHHHHHHHHh-----CCc----EE----------EEecccchhcccccchHHHHHHHHHHH-
Q 044198 493 MSPSRGVLFYGPPGCGKTLLAKAIANEC-----QAN----FI----------SIKGPELLTMWFGESEANVRDVFDKAR- 552 (772)
Q Consensus 493 ~~~~~~iLl~GppGtGKT~la~alA~~~-----~~~----~i----------~v~~~~l~~~~vg~se~~i~~vf~~a~- 552 (772)
.....-++|.||+|+||||+.+.++... +.. .. .+...+.+....+......+++-..++
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~ 749 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK 749 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh
Confidence 3445668999999999999999988432 211 01 111122111111111111222222222
Q ss_pred hCCCeEEEEcCchhhhhccCCCCCCCCchhHHHHHHHHHhcCCCCCCcEEEEeecCCCCCCC
Q 044198 553 QSAPCVLFFDELDSIAIQRGSSVGDGGGVDRIVNQLLTEMDGLSAKKTVFVIGATNRPDMID 614 (772)
Q Consensus 553 ~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 614 (772)
...|+++++||.-+-. +......+...++..+.. ..+..+|++|...+..+
T Consensus 750 a~~p~LlLLDEP~~Gl--------D~~~~~~i~~~il~~L~~---~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 750 ATSQSLVILDELGRGT--------STHDGIAIAYATLEYFIR---DVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp CCTTCEEEEESTTTTS--------CHHHHHHHHHHHHHHHHH---TTCCEEEEECSCGGGGG
T ss_pred ccCCCEEEEeCCCCCC--------CHHHHHHHHHHHHHHHHH---hcCCeEEEEeCcHHHHH
Confidence 4678999999974321 111133444566666631 12457888998876543
No 417
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.08 E-value=0.0047 Score=59.82 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=25.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 044198 226 ILLHGPPGTGKTLLARAIANET---GCYFLCIN 255 (772)
Q Consensus 226 vLL~GppGtGKT~Lar~la~~l---~~~~~~v~ 255 (772)
|.|.|++||||||+++.|++.+ +.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999998 87776553
No 418
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.08 E-value=0.0075 Score=63.09 Aligned_cols=29 Identities=21% Similarity=0.486 Sum_probs=25.0
Q ss_pred CCCCCceEEeCCCCCchhHHHHHHHHHhC
Q 044198 493 MSPSRGVLFYGPPGCGKTLLAKAIANECQ 521 (772)
Q Consensus 493 ~~~~~~iLl~GppGtGKT~la~alA~~~~ 521 (772)
+.+..-+.|.||+|+|||||++++++.+.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 45566799999999999999999998764
No 419
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.06 E-value=0.0038 Score=61.02 Aligned_cols=28 Identities=36% Similarity=0.504 Sum_probs=24.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 225 GILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
.|.|+|++||||||+++.|++ ++.+++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~ 30 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD 30 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE
Confidence 489999999999999999999 8765544
No 420
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.06 E-value=0.0074 Score=63.21 Aligned_cols=71 Identities=20% Similarity=0.293 Sum_probs=43.5
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccchh--------cc------------cc-cchHHHHHHHH
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLT--------MW------------FG-ESEANVRDVFD 549 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~--------~~------------vg-~se~~i~~vf~ 549 (772)
.++.-+++.||+|+||||++..+|..+ +.....+.. |... .| .| +....+...+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 345568999999999999999999776 334433332 2110 01 01 11111233455
Q ss_pred HHHhCCCeEEEEcCch
Q 044198 550 KARQSAPCVLFFDELD 565 (772)
Q Consensus 550 ~a~~~~p~ilfiDEid 565 (772)
.+....|.++++|+.-
T Consensus 181 ~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 5666778999999873
No 421
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.05 E-value=0.0043 Score=60.60 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=26.7
Q ss_pred CceEEeCCCCCchhHHHHHHHHHhCCcEEEE
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANECQANFISI 527 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~~~~~i~v 527 (772)
.-++|.|+|||||||+++.++..++.+++..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 3588999999999999999999998766553
No 422
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.05 E-value=0.0044 Score=61.63 Aligned_cols=29 Identities=34% Similarity=0.511 Sum_probs=25.8
Q ss_pred CceEEeCCCCCchhHHHHHHHHHhCCcEE
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANECQANFI 525 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~~~~~i 525 (772)
..+.|.|||||||||+++.++..++.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 35889999999999999999999987665
No 423
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.03 E-value=0.011 Score=64.67 Aligned_cols=70 Identities=14% Similarity=0.068 Sum_probs=42.4
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEecccc----------hhc------ccc---cc-hHHHHHHHHHHH
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPEL----------LTM------WFG---ES-EANVRDVFDKAR 552 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~~~l----------~~~------~vg---~s-e~~i~~vf~~a~ 552 (772)
+.-+++.||+|+||||++..+|..+ +.....+.+.-. ... +.. .. ..........+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 5568899999999999999999766 455544443211 000 111 11 111234455555
Q ss_pred hCCCeEEEEcCch
Q 044198 553 QSAPCVLFFDELD 565 (772)
Q Consensus 553 ~~~p~ilfiDEid 565 (772)
...+.++++|...
T Consensus 177 ~~~~DvvIIDTaG 189 (433)
T 3kl4_A 177 KNKMDIIIVDTAG 189 (433)
T ss_dssp TTTCSEEEEEECC
T ss_pred hcCCCEEEEECCC
Confidence 5567899999874
No 424
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.03 E-value=0.0038 Score=61.05 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=24.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANET 247 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l 247 (772)
.++.-+.|+||+||||||+++.|++.+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 455679999999999999999999976
No 425
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.01 E-value=0.0047 Score=59.66 Aligned_cols=28 Identities=36% Similarity=0.602 Sum_probs=24.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCeE
Q 044198 224 KGILLHGPPGTGKTLLARAIANETGCYF 251 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l~~~~ 251 (772)
+.|+|+||+|+|||||++.|....+..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4699999999999999999998875433
No 426
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.00 E-value=0.0053 Score=62.48 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=26.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFL 252 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~ 252 (772)
..-|.|.||+||||||+++.|++.++..++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 346999999999999999999999987544
No 427
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.99 E-value=0.0047 Score=60.26 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=27.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh-CCeEEEEe
Q 044198 223 PKGILLHGPPGTGKTLLARAIANET-GCYFLCIN 255 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l-~~~~~~v~ 255 (772)
+.-|.|.|++||||||+++.|++.+ +.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4569999999999999999999988 45565544
No 428
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.98 E-value=0.0044 Score=60.77 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=24.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANETG 248 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l~ 248 (772)
..+.-++|+||||+||||+++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4456699999999999999999999885
No 429
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.98 E-value=0.0038 Score=62.05 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=23.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANETG 248 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l~ 248 (772)
.++.-+.|+||+|+|||||++.|++...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4455599999999999999999999873
No 430
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.97 E-value=0.015 Score=69.76 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHH
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANE 246 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~ 246 (772)
...-++|+||+|+||||+++.++..
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHH
Confidence 3455999999999999999998753
No 431
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.94 E-value=0.0038 Score=61.19 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=25.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 044198 225 GILLHGPPGTGKTLLARAIANETGCYFLCINGPEI 259 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~ 259 (772)
-|.|.||+||||||+++.|++ ++.+++ ++.++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~ 35 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVV 35 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc--chHHH
Confidence 488999999999999999998 776554 44443
No 432
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.94 E-value=0.0047 Score=60.57 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=24.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGC 249 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~ 249 (772)
+.-|+|.|+|||||||+++.|++.++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 345899999999999999999999876
No 433
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.93 E-value=0.0053 Score=59.70 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=25.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 225 GILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
-|.|+|++||||||+++.+++.++.+++.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 38899999999999999999988876544
No 434
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.92 E-value=0.069 Score=56.47 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=30.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCING 256 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~ 256 (772)
|+.+..-++|.|+||+|||+|+..+|... +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 67777779999999999999999998764 556655543
No 435
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.91 E-value=0.0043 Score=61.29 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=26.0
Q ss_pred eEEeCCCCCchhHHHHHHHHHhCCcEEEE
Q 044198 499 VLFYGPPGCGKTLLAKAIANECQANFISI 527 (772)
Q Consensus 499 iLl~GppGtGKT~la~alA~~~~~~~i~v 527 (772)
++|.|+|||||||+++.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999998776654
No 436
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.91 E-value=0.005 Score=60.21 Aligned_cols=29 Identities=31% Similarity=0.589 Sum_probs=26.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 225 GILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
-|.|.|++||||||+++.|++.++.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 58899999999999999999999976654
No 437
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.89 E-value=0.0049 Score=62.38 Aligned_cols=30 Identities=27% Similarity=0.502 Sum_probs=26.0
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCcEE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQANFI 525 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~~i 525 (772)
+.-++|.||||+||||+++.++..++...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 456999999999999999999998886543
No 438
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.89 E-value=0.0052 Score=65.17 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=26.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 224 KGILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
.+++|+|+||+||||++++||+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 459999999999999999999998766543
No 439
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.88 E-value=0.0037 Score=63.51 Aligned_cols=31 Identities=29% Similarity=0.451 Sum_probs=27.9
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
...+.|.|++||||||+++.+|..++.+|+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 4569999999999999999999999987765
No 440
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.88 E-value=0.0048 Score=60.68 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=24.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhC
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANETG 248 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l~ 248 (772)
.+.++.-+.|.||+|+|||||++.|++.+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345566799999999999999999999875
No 441
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.88 E-value=0.0059 Score=59.54 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=28.2
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHh-CCcEEEEe
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANEC-QANFISIK 528 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~-~~~~i~v~ 528 (772)
+.-+.|.|++||||||+++.++..+ +.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4458999999999999999999998 57777654
No 442
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.88 E-value=0.008 Score=57.82 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=27.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC---CeEEEEech
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETG---CYFLCINGP 257 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~---~~~~~v~~~ 257 (772)
.+.-|+|.|+|||||||+++.++..++ ..+..+++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 345699999999999999999998874 334555543
No 443
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.87 E-value=0.0051 Score=61.30 Aligned_cols=28 Identities=25% Similarity=0.566 Sum_probs=24.8
Q ss_pred eEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 499 VLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 499 iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
++|.|+|||||||+++.++..++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 7899999999999999999999875544
No 444
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.87 E-value=0.0048 Score=60.07 Aligned_cols=28 Identities=18% Similarity=0.464 Sum_probs=25.5
Q ss_pred eEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 499 VLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 499 iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
+.|.|+|||||||+++.++..++..++.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 7899999999999999999999987654
No 445
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.86 E-value=0.017 Score=68.44 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=35.9
Q ss_pred CCcccccccchHHHHHHHhhhccccCCc--hHHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHH
Q 044198 457 PNVRWADIGGLDTVKRELQETVQYPVEH--PEMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANE 519 (772)
Q Consensus 457 ~~v~~~~i~g~~~~k~~l~~~i~~~~~~--~~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~ 519 (772)
+...|++++-.+...+.+.+.-..|... ...... +.....+++.||+|+|||+++..++..
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~--l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKL--YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHH--HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3345666666666666665544444321 111111 122456999999999999977776544
No 446
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.85 E-value=0.0057 Score=63.88 Aligned_cols=32 Identities=28% Similarity=0.556 Sum_probs=27.1
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Q 044198 218 LGVKPPKGILLHGPPGTGKTLLARAIANETGC 249 (772)
Q Consensus 218 ~~~~~~~~vLL~GppGtGKT~Lar~la~~l~~ 249 (772)
+.+.+...+.|+||+|+|||||++.|++.+..
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G 152 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGG 152 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHHTC
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhcCc
Confidence 35566677999999999999999999998833
No 447
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.85 E-value=0.0046 Score=60.42 Aligned_cols=27 Identities=33% Similarity=0.711 Sum_probs=22.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETG 248 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~ 248 (772)
+++.+.|+||+|+|||||++.|++...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345699999999999999999999764
No 448
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.84 E-value=0.0067 Score=59.77 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=30.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC----CeEEEEechhh
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANETG----CYFLCINGPEI 259 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l~----~~~~~v~~~~~ 259 (772)
..+.-|+|.|++|+||||+++.|++.++ .+++.+++..+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 4456699999999999999999998764 44677765443
No 449
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.84 E-value=0.047 Score=54.46 Aligned_cols=54 Identities=24% Similarity=0.185 Sum_probs=30.6
Q ss_pred cccccccchHHHHHHHhhhcc-ccCCch-HHHhhcCCCCCCceEEeCCCCCchhHHHH
Q 044198 459 VRWADIGGLDTVKRELQETVQ-YPVEHP-EMFEKFGMSPSRGVLFYGPPGCGKTLLAK 514 (772)
Q Consensus 459 v~~~~i~g~~~~k~~l~~~i~-~~~~~~-~~~~~~~~~~~~~iLl~GppGtGKT~la~ 514 (772)
..|++++-.+.+.+.+.+.-. .+..+. +.+..+ ...+.+++.+|+|+|||..+-
T Consensus 25 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~--~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 25 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLA--LQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp SBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH--hCCCCEEEEeCCCCcHHHHHH
Confidence 457777766677666654321 111111 111111 123569999999999998644
No 450
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.84 E-value=0.02 Score=62.78 Aligned_cols=71 Identities=23% Similarity=0.217 Sum_probs=43.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEechhhh----------hhcc----------cchHHHHHHHHHHHH
Q 044198 223 PKGILLHGPPGTGKTLLARAIANET---GCYFLCINGPEIM----------SKMA----------GESESNLREAFNVAE 279 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~~~~~----------~~~~----------g~~~~~l~~~f~~a~ 279 (772)
+.-++++||+|+||||++..||..+ +..+..+.+.... .... .+........+..+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4568999999999999999999766 5555555532110 0000 011222334455555
Q ss_pred HcCCceEEeccccc
Q 044198 280 KNAPSIIFIDEIDS 293 (772)
Q Consensus 280 ~~~p~il~iDEid~ 293 (772)
...+.++++|....
T Consensus 177 ~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 177 KNKMDIIIVDTAGR 190 (433)
T ss_dssp TTTCSEEEEEECCC
T ss_pred hcCCCEEEEECCCC
Confidence 55678999997743
No 451
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.83 E-value=0.0074 Score=67.85 Aligned_cols=71 Identities=24% Similarity=0.362 Sum_probs=48.8
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhC--CcEEEEeccc-chh---cc--------cccchHHHHHHHHHHHhCCCeEEE
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPE-LLT---MW--------FGESEANVRDVFDKARQSAPCVLF 560 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~--~~~i~v~~~~-l~~---~~--------vg~se~~i~~vf~~a~~~~p~ilf 560 (772)
.+..+++.||+|+||||+++++++... ...+.+.++. +.- .+ ++.....+..+...+-.+.|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 456699999999999999999998874 3466666543 210 01 111223455666666678899999
Q ss_pred EcCch
Q 044198 561 FDELD 565 (772)
Q Consensus 561 iDEid 565 (772)
++|+-
T Consensus 339 vgEir 343 (511)
T 2oap_1 339 VGEVR 343 (511)
T ss_dssp ESCCC
T ss_pred eCCcC
Confidence 99973
No 452
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.80 E-value=0.0066 Score=58.52 Aligned_cols=30 Identities=27% Similarity=0.224 Sum_probs=27.0
Q ss_pred eEEeCCCCCchhHHHHHHHHHh---CCcEEEEe
Q 044198 499 VLFYGPPGCGKTLLAKAIANEC---QANFISIK 528 (772)
Q Consensus 499 iLl~GppGtGKT~la~alA~~~---~~~~i~v~ 528 (772)
+.|.|+|||||||+++.++..+ +.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999988 88887764
No 453
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.78 E-value=0.0064 Score=60.91 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=26.8
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
+..+.|.|||||||||+++.+|..++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3468999999999999999999999876643
No 454
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.78 E-value=0.0051 Score=60.58 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGC 249 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~ 249 (772)
+.-+.|+||+|+|||||++.|++.++.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 455899999999999999999998753
No 455
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.77 E-value=0.0047 Score=69.46 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=45.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC--CeEEEEechhhhhh-c-----------ccchHHHHHHHHHHHHHcCCceEE
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETG--CYFLCINGPEIMSK-M-----------AGESESNLREAFNVAEKNAPSIIF 287 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~--~~~~~v~~~~~~~~-~-----------~g~~~~~l~~~f~~a~~~~p~il~ 287 (772)
.+.+++|.||+||||||+++++++.+. ...+.+.+..-... . .+.....+...+..+..+.|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 356799999999999999999999874 34566655431110 0 001111234445555567899999
Q ss_pred eccc
Q 044198 288 IDEI 291 (772)
Q Consensus 288 iDEi 291 (772)
+.|+
T Consensus 339 vgEi 342 (511)
T 2oap_1 339 VGEV 342 (511)
T ss_dssp ESCC
T ss_pred eCCc
Confidence 9998
No 456
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.74 E-value=0.0069 Score=58.39 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=26.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 044198 225 GILLHGPPGTGKTLLARAIANETGCYFLCINGPEI 259 (772)
Q Consensus 225 ~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~ 259 (772)
-++|.||+|+||||+++.|++..+. .+.+++.++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 4789999999999999999986543 255665544
No 457
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.73 E-value=0.0057 Score=60.16 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=24.3
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANETG 248 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l~ 248 (772)
.++.-+.|.||+|+|||||++.|++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455689999999999999999999875
No 458
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.73 E-value=0.0046 Score=64.30 Aligned_cols=38 Identities=24% Similarity=0.465 Sum_probs=31.6
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecccch
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 533 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~~l~ 533 (772)
+.-+++.||+|+|||+||..+|..++..+++.+.-.++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY 47 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIY 47 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTB
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccccc
Confidence 34578999999999999999999998887777665553
No 459
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.72 E-value=0.0077 Score=58.26 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=26.5
Q ss_pred eEEeCCCCCchhHHHHHHHHHh---CCcEEEEec
Q 044198 499 VLFYGPPGCGKTLLAKAIANEC---QANFISIKG 529 (772)
Q Consensus 499 iLl~GppGtGKT~la~alA~~~---~~~~i~v~~ 529 (772)
+.|.|++||||||+++.++..+ +.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7899999999999999999998 888876543
No 460
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.70 E-value=0.0063 Score=59.24 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=26.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEI 259 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~ 259 (772)
+.-|.|.|++||||||+++.|++. +.++ ++..++
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~--id~d~~ 41 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPV--LDLDAL 41 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCE--EEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEE--EcccHH
Confidence 445999999999999999999997 6554 444443
No 461
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.70 E-value=0.0057 Score=59.77 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=24.3
Q ss_pred ceEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 498 GVLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
.+.|.|++||||||+++.++. ++.+++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~ 30 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD 30 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE
Confidence 378999999999999999999 7766554
No 462
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.69 E-value=0.02 Score=62.64 Aligned_cols=68 Identities=21% Similarity=0.340 Sum_probs=40.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCC---eEEEEechhhhhh-------ccc-chHHHHHHHHHHHHHcCCceEEecccc
Q 044198 224 KGILLHGPPGTGKTLLARAIANETGC---YFLCINGPEIMSK-------MAG-ESESNLREAFNVAEKNAPSIIFIDEID 292 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l~~---~~~~v~~~~~~~~-------~~g-~~~~~l~~~f~~a~~~~p~il~iDEid 292 (772)
.-++|+||+|+||||+++++++.++. .++.+. ..+... ... ...-.....+..+..+.|.++++.|+-
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e-d~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE-DPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE-SSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec-ccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 34899999999999999999998853 333332 211000 000 000112333444555789999998873
No 463
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.68 E-value=0.0071 Score=62.84 Aligned_cols=37 Identities=32% Similarity=0.525 Sum_probs=30.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLCINGPEI 259 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~ 259 (772)
+.-++|.||+|||||+|+..+|+.++..++..+...+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 3458899999999999999999999877766655443
No 464
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.68 E-value=0.0041 Score=59.96 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=26.1
Q ss_pred ceEEeCCCCCchhHHHHHHHHHhC---CcEEEEeccc
Q 044198 498 GVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPE 531 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~~---~~~i~v~~~~ 531 (772)
-++|.|+|||||||+++.++..++ .++..+...+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 378999999999999999999875 2344444333
No 465
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.66 E-value=0.006 Score=58.86 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=22.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Q 044198 224 KGILLHGPPGTGKTLLARAIANETG 248 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l~ 248 (772)
+-+.|.||+|+|||||++.|++.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999999875
No 466
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.65 E-value=0.0063 Score=59.62 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.6
Q ss_pred ceEEeCCCCCchhHHHHHHHHHhCCcEE
Q 044198 498 GVLFYGPPGCGKTLLAKAIANECQANFI 525 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~~~~~i 525 (772)
.+.|.||+||||||+++.++. ++.+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i 30 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV 30 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc
Confidence 378999999999999999998 777665
No 467
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.65 E-value=0.032 Score=53.92 Aligned_cols=108 Identities=13% Similarity=0.186 Sum_probs=61.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCeEEEE---ech------hhhhhcc-------------c----chHHHHHHH
Q 044198 224 KGILLHGPPGTGKTLLARAIANET---GCYFLCI---NGP------EIMSKMA-------------G----ESESNLREA 274 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v---~~~------~~~~~~~-------------g----~~~~~l~~~ 274 (772)
..|++|+++|.||||+|-.+|-.. |..+..+ .+. .+..... . +........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 359999999999999998887654 6666655 221 2222221 0 012334555
Q ss_pred HHHHHH----cCCceEEeccccccccCCCCCchhhHHHHHHHHHHHhhcccccCceEEEEeeCCCCCCChhhhc
Q 044198 275 FNVAEK----NAPSIIFIDEIDSIAPKREKTHGEVEKRIVSQLLTLMDGMKSRAHVMVIGATNRPNSIDPALRR 344 (772)
Q Consensus 275 f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L~~lld~~~~~~~v~vI~atn~~~~ld~al~r 344 (772)
+..+.. ....+|++||+.....-+--. .+.+++++.... ...-||.|.|.+ ++.|..
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~--------~~ev~~~l~~Rp--~~~~vIlTGr~a---p~~l~e 169 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLP--------LEEVISALNARP--GHQTVIITGRGC---HRDILD 169 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSC--------HHHHHHHHHTSC--TTCEEEEECSSC---CHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCC--------HHHHHHHHHhCc--CCCEEEEECCCC---cHHHHH
Confidence 555554 346899999997654322211 133455554322 345666677654 444443
No 468
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.65 E-value=0.0079 Score=58.58 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=23.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETG 248 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~ 248 (772)
.++-+.|+||+|+|||||++.|++..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 455699999999999999999999875
No 469
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.64 E-value=0.0067 Score=59.63 Aligned_cols=27 Identities=41% Similarity=0.508 Sum_probs=24.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETG 248 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~ 248 (772)
++.-+.|.||+|||||||++.|++.++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345589999999999999999999887
No 470
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.62 E-value=0.016 Score=66.75 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=19.7
Q ss_pred CceEEeCCCCCchhHHHHHHHHHh
Q 044198 497 RGVLFYGPPGCGKTLLAKAIANEC 520 (772)
Q Consensus 497 ~~iLl~GppGtGKT~la~alA~~~ 520 (772)
+.+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 458999999999999888776544
No 471
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.60 E-value=0.014 Score=64.63 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=29.9
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh----CCcEEEEec
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC----QANFISIKG 529 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~----~~~~i~v~~ 529 (772)
|++++.-+++.|+||+|||+++..+|... +.+++.++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 67777779999999999999999888653 446665544
No 472
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.60 E-value=0.0073 Score=61.09 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=24.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCC
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANETGC 249 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l~~ 249 (772)
++.-+.|.||+|||||||++.|++.++.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 3444889999999999999999998864
No 473
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.59 E-value=0.032 Score=67.07 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 044198 224 KGILLHGPPGTGKTLLARAIAN 245 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~ 245 (772)
.-++|+||+|+||||++|.++.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999954
No 474
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.59 E-value=0.006 Score=59.89 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=23.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGC 249 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~ 249 (772)
+.-|+|.|+|||||||+++.|++.++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 456999999999999999999998754
No 475
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.59 E-value=0.01 Score=59.60 Aligned_cols=33 Identities=30% Similarity=0.516 Sum_probs=27.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
..+..|.|.|++||||||+++.|++.++.+++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 345569999999999999999999999876543
No 476
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.59 E-value=0.0059 Score=59.87 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANET 247 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l 247 (772)
++.-+.|.|++||||||+++.|++.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34458899999999999999999977
No 477
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.56 E-value=0.0097 Score=58.85 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=24.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCeEEE
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCYFLC 253 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~~~~ 253 (772)
+.-|.|.|++||||||+++.|++ ++.+++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 34689999999999999999998 7765443
No 478
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.55 E-value=0.029 Score=59.03 Aligned_cols=38 Identities=24% Similarity=0.132 Sum_probs=29.5
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh---CCcEEEEec
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC---QANFISIKG 529 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~---~~~~i~v~~ 529 (772)
|+.+..-+++.|+||+|||+++..+|... +.+.+.++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 67777779999999999999999988654 345555543
No 479
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.54 E-value=0.0064 Score=59.80 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=23.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETG 248 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~ 248 (772)
+.-|+|.|++||||||+++.|++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45699999999999999999999864
No 480
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.54 E-value=0.011 Score=59.94 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=30.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCe--------EEEEechhhh
Q 044198 223 PKGILLHGPPGTGKTLLARAIANETGCY--------FLCINGPEIM 260 (772)
Q Consensus 223 ~~~vLL~GppGtGKT~Lar~la~~l~~~--------~~~v~~~~~~ 260 (772)
+.-|.|.|++||||||+++.|+..++.+ ...++..++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 4459999999999999999999998865 3356655543
No 481
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.54 E-value=0.0059 Score=64.38 Aligned_cols=34 Identities=26% Similarity=0.286 Sum_probs=29.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCeEEEEech
Q 044198 224 KGILLHGPPGTGKTLLARAIANETGCYFLCINGP 257 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~ 257 (772)
+-|+|.||+|||||+|+..||+.++..++..+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4589999999999999999999998777666554
No 482
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.51 E-value=0.018 Score=57.02 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=24.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 044198 224 KGILLHGPPGTGKTLLARAIANET---GCYFLCIN 255 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~ 255 (772)
..|++.|+||+||||++-.+|..+ |..++.++
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 359999999999999988888765 55554443
No 483
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.49 E-value=0.0098 Score=60.45 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=26.3
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCcEE
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQANFI 525 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~~i 525 (772)
...+.|.||+||||||+++.+|..++..++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 345889999999999999999999987655
No 484
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.48 E-value=0.0077 Score=56.53 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=24.8
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHh
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANEC 520 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~ 520 (772)
.+.+..-+.|.||+|+|||||++++++.+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34555568999999999999999999987
No 485
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.48 E-value=0.035 Score=69.76 Aligned_cols=38 Identities=24% Similarity=0.458 Sum_probs=29.5
Q ss_pred CCCCCCceEEeCCCCCchhHHHHHHHHHhCCc--EEEEec
Q 044198 492 GMSPSRGVLFYGPPGCGKTLLAKAIANECQAN--FISIKG 529 (772)
Q Consensus 492 ~~~~~~~iLl~GppGtGKT~la~alA~~~~~~--~i~v~~ 529 (772)
.++++..+.++||+|||||||++++.+.+... -+.+++
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG 479 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDG 479 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETT
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCC
Confidence 34566779999999999999999999887532 355544
No 486
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.46 E-value=0.072 Score=58.77 Aligned_cols=38 Identities=24% Similarity=0.167 Sum_probs=30.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 044198 219 GVKPPKGILLHGPPGTGKTLLARAIANET---GCYFLCING 256 (772)
Q Consensus 219 ~~~~~~~vLL~GppGtGKT~Lar~la~~l---~~~~~~v~~ 256 (772)
|+.+..-++|.|+||+|||+++..+|... +.++.+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 67777779999999999999999888654 556666654
No 487
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.45 E-value=0.0094 Score=58.19 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=26.3
Q ss_pred ceEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 498 GVLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
.+.|.|++||||||+++.+|..++.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 58899999999999999999999987764
No 488
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.44 E-value=0.049 Score=57.88 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=32.5
Q ss_pred cccccccchHHHHHHHhhhccc-cCCch-HHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHH
Q 044198 459 VRWADIGGLDTVKRELQETVQY-PVEHP-EMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANE 519 (772)
Q Consensus 459 v~~~~i~g~~~~k~~l~~~i~~-~~~~~-~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~ 519 (772)
.+|++++-.+.+.+.|.+.--. +..+. +.+..+ +.....+++.+|+|+|||..+-..+..
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLF-LNDEYNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHH-HHTCSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-hCCCCCEEEECCCCChHHHHHHHHHHH
Confidence 4566666556666655543211 11111 111111 122357999999999999987655544
No 489
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.44 E-value=0.02 Score=68.70 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=20.3
Q ss_pred CCCceEEeCCCCCchhHHHHHHHH
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIAN 518 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~ 518 (772)
...-++|.||+|+||||+.+.+|.
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345589999999999999999853
No 490
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.43 E-value=0.04 Score=59.60 Aligned_cols=102 Identities=22% Similarity=0.243 Sum_probs=0.0
Q ss_pred hcCCCCCCceEEeCCCCCchhHHHHHHHHHhCCcE--EEEecccc-----------------------------------
Q 044198 490 KFGMSPSRGVLFYGPPGCGKTLLAKAIANECQANF--ISIKGPEL----------------------------------- 532 (772)
Q Consensus 490 ~~~~~~~~~iLl~GppGtGKT~la~alA~~~~~~~--i~v~~~~l----------------------------------- 532 (772)
.+.+.+..-+.|.||+|||||||.+++++... .- +.+++.++
T Consensus 41 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~ 119 (390)
T 3gd7_A 41 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAA 119 (390)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCC
T ss_pred eEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhccc
Q ss_pred ------------------hhccccc------------c-hHHHHHHHHHHHhCCCeEEEEcCchhhhhccCCCCCCCCch
Q 044198 533 ------------------LTMWFGE------------S-EANVRDVFDKARQSAPCVLFFDELDSIAIQRGSSVGDGGGV 581 (772)
Q Consensus 533 ------------------~~~~vg~------------s-e~~i~~vf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~ 581 (772)
..++..+ | .+.-|-.+.+|-...|.+|++||--+-+ .
T Consensus 120 ~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~L------------D 187 (390)
T 3gd7_A 120 HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHL------------D 187 (390)
T ss_dssp SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHS------------C
T ss_pred cCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC------------C
Q ss_pred hHHHHHHHHHhcCCCCCCcEEEE
Q 044198 582 DRIVNQLLTEMDGLSAKKTVFVI 604 (772)
Q Consensus 582 ~~~~~~lL~~ld~~~~~~~v~vi 604 (772)
.....++...|........++++
T Consensus 188 ~~~~~~l~~~l~~~~~~~tvi~v 210 (390)
T 3gd7_A 188 PVTYQIIRRTLKQAFADCTVILC 210 (390)
T ss_dssp HHHHHHHHHHHHTTTTTSCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEE
No 491
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.42 E-value=0.0071 Score=59.05 Aligned_cols=27 Identities=26% Similarity=0.408 Sum_probs=23.5
Q ss_pred CCCCceEEeCCCCCchhHHHHHHHHHh
Q 044198 494 SPSRGVLFYGPPGCGKTLLAKAIANEC 520 (772)
Q Consensus 494 ~~~~~iLl~GppGtGKT~la~alA~~~ 520 (772)
.++.-+.|.||||+||||+++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 345568999999999999999999876
No 492
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.42 E-value=0.0098 Score=57.79 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=25.6
Q ss_pred ceEEeCCCCCchhHHHHHHHHHhCCcEEE
Q 044198 498 GVLFYGPPGCGKTLLAKAIANECQANFIS 526 (772)
Q Consensus 498 ~iLl~GppGtGKT~la~alA~~~~~~~i~ 526 (772)
-+.|.|++||||||+++.++..++++++.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 37899999999999999999988877654
No 493
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.40 E-value=0.038 Score=57.55 Aligned_cols=35 Identities=29% Similarity=0.285 Sum_probs=27.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHh----CCeEEEEec
Q 044198 222 PPKGILLHGPPGTGKTLLARAIANET----GCYFLCING 256 (772)
Q Consensus 222 ~~~~vLL~GppGtGKT~Lar~la~~l----~~~~~~v~~ 256 (772)
.+.-++|+||+|+||||++..||..+ |..+..+.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 35569999999999999999999765 335555544
No 494
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.39 E-value=0.1 Score=51.22 Aligned_cols=60 Identities=18% Similarity=0.107 Sum_probs=33.9
Q ss_pred cccccccchHHHHHHHhhhc-cccCCch-HHHhhcCCCCCCceEEeCCCCCchhHHHHHHHHHh
Q 044198 459 VRWADIGGLDTVKRELQETV-QYPVEHP-EMFEKFGMSPSRGVLFYGPPGCGKTLLAKAIANEC 520 (772)
Q Consensus 459 v~~~~i~g~~~~k~~l~~~i-~~~~~~~-~~~~~~~~~~~~~iLl~GppGtGKT~la~alA~~~ 520 (772)
..|++++-.+.+.+.+.+.- ..+..+. +.+..+ -....+++.+|+|+|||..+-..+-..
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~--~~~~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQA--ILGMDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH--hCCCCEEEECCCCCchhhhhhHHHHHh
Confidence 45777766666666665521 1121111 111111 113569999999999998766555443
No 495
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.39 E-value=0.0099 Score=59.06 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=24.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC
Q 044198 221 KPPKGILLHGPPGTGKTLLARAIANETG 248 (772)
Q Consensus 221 ~~~~~vLL~GppGtGKT~Lar~la~~l~ 248 (772)
.++.-+.|.||+|+|||||++.|++...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4455699999999999999999999875
No 496
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.36 E-value=0.0091 Score=57.21 Aligned_cols=26 Identities=12% Similarity=0.419 Sum_probs=22.5
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhC
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQ 521 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~ 521 (772)
+.-+.|.||+|+|||||+++++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999998764
No 497
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.35 E-value=0.0044 Score=61.00 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=24.0
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhCC
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQA 522 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~~ 522 (772)
.+.-++|.|+|||||||+++.++..++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3456899999999999999999988643
No 498
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.35 E-value=0.0096 Score=61.97 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=29.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCeEEEEechhh
Q 044198 224 KGILLHGPPGTGKTLLARAIANETGCYFLCINGPEI 259 (772)
Q Consensus 224 ~~vLL~GppGtGKT~Lar~la~~l~~~~~~v~~~~~ 259 (772)
+-|+|.||+|||||+|+..||+.++..++..+...+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Qv 39 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQV 39 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccc
Confidence 358899999999999999999998876666554433
No 499
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.34 E-value=0.0091 Score=58.20 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=26.1
Q ss_pred CCCceEEeCCCCCchhHHHHHHHHHhCCcEEEEecc
Q 044198 495 PSRGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 530 (772)
Q Consensus 495 ~~~~iLl~GppGtGKT~la~alA~~~~~~~i~v~~~ 530 (772)
++.-+.|.||+|+|||||++.++.... .+.+.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~~ 39 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA--EIKISIS 39 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS--SEEECCC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC--CeEEece
Confidence 345588999999999999999999853 3444443
No 500
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.34 E-value=0.0044 Score=60.87 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=24.1
Q ss_pred CCceEEeCCCCCchhHHHHHHHHHhCCc
Q 044198 496 SRGVLFYGPPGCGKTLLAKAIANECQAN 523 (772)
Q Consensus 496 ~~~iLl~GppGtGKT~la~alA~~~~~~ 523 (772)
+.-++|.|+|||||||+++.++..++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4558999999999999999999987544
Done!