Query 044200
Match_columns 132
No_of_seqs 118 out of 342
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 12:23:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03479 DUF296: Domain of unk 99.7 1.6E-16 3.4E-21 116.1 6.6 84 2-89 36-120 (120)
2 COG1661 Predicted DNA-binding 99.5 6.3E-14 1.4E-18 107.2 8.6 87 2-94 44-132 (141)
3 KOG1545 Voltage-gated shaker-l 48.3 11 0.00023 34.2 1.6 43 55-98 417-461 (507)
4 PF11906 DUF3426: Protein of u 43.1 64 0.0014 23.5 4.9 42 24-66 65-106 (149)
5 PRK15235 outer membrane fimbri 34.4 55 0.0012 31.3 4.1 45 5-60 269-318 (814)
6 PF14869 DUF4488: Domain of un 33.7 54 0.0012 25.2 3.3 28 2-32 36-63 (133)
7 PRK15273 putative fimbrial out 29.5 72 0.0016 30.9 4.0 47 5-61 283-329 (881)
8 PF15631 Imm-NTF2-2: NTF2 fold 28.4 96 0.0021 21.1 3.4 27 30-61 34-60 (66)
9 PRK15255 fimbrial outer membra 28.3 82 0.0018 30.2 4.1 46 5-60 285-330 (829)
10 PF03306 AAL_decarboxy: Alpha- 25.7 1.4E+02 0.003 24.4 4.5 85 2-91 113-207 (220)
11 PRK15223 pilin outer membrane 25.5 1.2E+02 0.0026 29.0 4.7 47 5-60 285-331 (836)
12 PRK15198 outer membrane usher 25.5 1.2E+02 0.0027 29.1 4.8 47 5-60 288-334 (860)
13 PRK15304 putative fimbrial out 25.2 95 0.0021 29.5 3.9 48 5-61 271-318 (801)
14 COG0174 GlnA Glutamine synthet 25.0 91 0.002 28.0 3.6 32 30-61 225-258 (443)
15 PRK15193 outer membrane usher 24.9 1.3E+02 0.0028 29.1 4.8 47 5-60 307-353 (876)
16 PRK15298 fimbrial outer membra 24.6 1.3E+02 0.0029 28.9 4.8 47 5-60 294-340 (848)
17 PF11141 DUF2914: Protein of u 24.6 95 0.0021 20.5 2.8 19 44-62 41-59 (66)
18 PF06974 DUF1298: Protein of u 24.6 1.9E+02 0.0041 21.5 4.8 47 17-71 87-133 (153)
19 PRK15294 putative fimbrial out 24.1 1.4E+02 0.003 28.7 4.8 47 5-60 290-336 (845)
20 COG4136 ABC-type uncharacteriz 23.6 68 0.0015 26.2 2.3 31 3-33 4-35 (213)
21 PRK15248 fimbrial outer membra 23.2 1.5E+02 0.0033 28.5 4.9 47 5-60 286-332 (853)
22 PRK15217 fimbrial outer membra 23.0 1.5E+02 0.0032 28.4 4.8 47 5-60 273-319 (826)
23 PRK15207 long polar fimbrial o 22.0 1.6E+02 0.0035 28.3 4.8 47 5-60 303-349 (842)
24 PF02852 Pyr_redox_dim: Pyridi 21.2 98 0.0021 21.3 2.5 24 45-68 47-70 (110)
25 PRK15213 fimbrial outer membra 21.2 1.4E+02 0.0029 28.5 4.1 46 5-60 274-319 (797)
26 PRK15284 putative fimbrial out 21.1 1.3E+02 0.0028 29.1 4.1 46 5-60 305-350 (881)
No 1
>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown. Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.
Probab=99.66 E-value=1.6e-16 Score=116.15 Aligned_cols=84 Identities=29% Similarity=0.462 Sum_probs=65.9
Q ss_pred cceeEEEeeCCCC-CCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceEeeecccCceecceEEEEee
Q 044200 2 GTVASVTLRQPSA-TPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVVAA 80 (132)
Q Consensus 2 GsVs~VtLR~p~~-~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqViGG~V~G~liAat~V~Vv~~ 80 (132)
|+|++|+||+++. ....+.+++|+|||+||+||+.+.+. ++..||||+|+++||+|+||||....+ ..++||++-
T Consensus 36 Gsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g---~~~~HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~ 111 (120)
T PF03479_consen 36 GSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDG---KPFVHLHISLADPDGQVFGGHLLEGTV-FATAEVVIT 111 (120)
T ss_dssp EEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETT---EEEEEEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEE
T ss_pred eEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCC---CCcceEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEE
Confidence 8999999999631 11468899999999999999998332 345799999999999999999995555 666677777
Q ss_pred ecCCcceee
Q 044200 81 TFNNPSYHR 89 (132)
Q Consensus 81 sF~~~~f~R 89 (132)
.+....|.|
T Consensus 112 ~~~~~~~~~ 120 (120)
T PF03479_consen 112 ELSGINFTR 120 (120)
T ss_dssp EETTEEEEE
T ss_pred EecCccccC
Confidence 666666665
No 2
>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]
Probab=99.51 E-value=6.3e-14 Score=107.23 Aligned_cols=87 Identities=15% Similarity=0.147 Sum_probs=78.2
Q ss_pred cceeEEEeeCCCCC--CCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceEeeecccCceecceEEEEe
Q 044200 2 GTVASVTLRQPSAT--PGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVVA 79 (132)
Q Consensus 2 GsVs~VtLR~p~~~--~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqViGG~V~G~liAat~V~Vv~ 79 (132)
|++++++||..+.. .-.++++.+|||||||.|++..++ +..|+|++|++++|+++|||+....+.. ++||+|
T Consensus 44 Gal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~-----p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I 117 (141)
T COG1661 44 GALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD-----PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFI 117 (141)
T ss_pred eeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC-----CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEE
Confidence 78999999998732 135889999999999999999987 3469999999999999999999999988 999999
Q ss_pred eecCCcceeeccCcc
Q 044200 80 ATFNNPSYHRLPVQD 94 (132)
Q Consensus 80 ~sF~~~~f~R~p~~~ 94 (132)
-.++...+.|.+++.
T Consensus 118 ~el~~~~~~R~~d~~ 132 (141)
T COG1661 118 RELPGELFRREFDPT 132 (141)
T ss_pred EEccccceeEecCCC
Confidence 999999999999884
No 3
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=48.32 E-value=11 Score=34.21 Aligned_cols=43 Identities=33% Similarity=0.437 Sum_probs=34.0
Q ss_pred CCCCceEeee--cccCceecceEEEEeeecCCcceeeccCcchhcc
Q 044200 55 GPQGQIMGGS--VVGPLLAVGTVFVVAATFNNPSYHRLPVQDEQQR 98 (132)
Q Consensus 55 ~~~GqViGG~--V~G~liAat~V~Vv~~sF~~~~f~R~p~~~~~~~ 98 (132)
..-|+++|.- ++|-|..|=||-||+..| |.-|||+-..++++.
T Consensus 417 TvgGKIVGslCAiaGVLTiALPVPVIVsNF-nyFYhrEte~ee~~~ 461 (507)
T KOG1545|consen 417 TVGGKIVGSLCAIAGVLTIALPVPVIVSNF-NYFYHRETEGEEQAQ 461 (507)
T ss_pred ccCceehhhHHhhhhheEecccccEEEecc-cceeeccccchhhhc
Confidence 3568888886 789999999999999999 567888766555443
No 4
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=43.13 E-value=64 Score=23.53 Aligned_cols=42 Identities=21% Similarity=0.172 Sum_probs=31.1
Q ss_pred eeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceEeeecc
Q 044200 24 GRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVV 66 (132)
Q Consensus 24 G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqViGG~V~ 66 (132)
..=+++.++|++.+..... ...-.+.++|.|.+|+++-=-+.
T Consensus 65 ~~~~~l~v~g~i~N~~~~~-~~~P~l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 65 DGPGVLVVSGTIRNRADFP-QALPALELSLLDAQGQPLARRVF 106 (149)
T ss_pred CCCCEEEEEEEEEeCCCCc-ccCceEEEEEECCCCCEEEEEEE
Confidence 3567888999998876432 23348999999999998765554
No 5
>PRK15235 outer membrane fimbrial usher protein SefC; Provisional
Probab=34.45 E-value=55 Score=31.29 Aligned_cols=45 Identities=27% Similarity=0.303 Sum_probs=27.5
Q ss_pred eEEEeeCCCCCCCCcEEEeeeeeEE-----EeeeeeecCCCCCCCCCCeeEEEEeCCCCce
Q 044200 5 ASVTLRQPSATPGSTITFHGRFDIL-----WISATFLPQNAAYLPLPNIFAISLAGPQGQI 60 (132)
Q Consensus 5 s~VtLR~p~~~~~~~~tl~G~FEIl-----SLsGT~~p~~~~~~~~~~~l~ISLA~~~GqV 60 (132)
+.|+|||-+.---++..=.|||||= .| .+ . .+-|.|.+-+++|++
T Consensus 269 A~V~V~QnG~~iY~t~VppGPF~I~d~p~~dl-~~----~------~GdL~V~V~EadG~~ 318 (814)
T PRK15235 269 ATVEVRQNGYLIYSTSVPPGQFEIGREQIADL-GV----G------VGVLDVSIYEKNGQV 318 (814)
T ss_pred cEEEEEECCEEEEEEEeCCCCeEecCcccccC-CC----C------cceEEEEEEEcCCCE
Confidence 5789999652101233334999993 34 22 1 135888888888875
No 6
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=33.74 E-value=54 Score=25.23 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=21.4
Q ss_pred cceeEEEeeCCCCCCCCcEEEeeeeeEEEee
Q 044200 2 GTVASVTLRQPSATPGSTITFHGRFDILWIS 32 (132)
Q Consensus 2 GsVs~VtLR~p~~~~~~~~tl~G~FEIlSLs 32 (132)
|+..|++++ +.+ ++++++.|.||+.|=+
T Consensus 36 gtf~Ni~~~-~~~--~aiIt~~GtY~~~sD~ 63 (133)
T PF14869_consen 36 GTFVNITMI-PKS--GAIITGYGTYEQPSDN 63 (133)
T ss_pred CcEEEEEEe-CCC--CcEEEEeEEEEEcCCc
Confidence 678888884 332 5799999999998743
No 7
>PRK15273 putative fimbrial outer membrane usher protein SteB; Provisional
Probab=29.48 E-value=72 Score=30.88 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=30.3
Q ss_pred eEEEeeCCCCCCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceE
Q 044200 5 ASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIM 61 (132)
Q Consensus 5 s~VtLR~p~~~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqVi 61 (132)
++|+|||-+.---++..=.|||+|=-|. .. ..+-|.|.+-+++|++-
T Consensus 283 A~VtV~QnG~~IY~t~VPpGPF~I~DLp-----~~-----~~GdL~V~V~EadG~~~ 329 (881)
T PRK15273 283 AKVKVSWQGRVLYETQVPAGPFRIQDLN-----QS-----VSGTLHVTVEEQNGQTQ 329 (881)
T ss_pred cEEEEEECCEEEEEeEeCCCCeEecCCC-----CC-----CCccEEEEEEEcCCCEE
Confidence 6899999652101233334999997761 11 12369999999999874
No 8
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=28.45 E-value=96 Score=21.09 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=20.1
Q ss_pred EeeeeeecCCCCCCCCCCeeEEEEeCCCCceE
Q 044200 30 WISATFLPQNAAYLPLPNIFAISLAGPQGQIM 61 (132)
Q Consensus 30 SLsGT~~p~~~~~~~~~~~l~ISLA~~~GqVi 61 (132)
-.+||+-|. ...+-++|.|...||+|+
T Consensus 34 iV~Gtl~~~-----~~GGv~~I~I~K~dgkVl 60 (66)
T PF15631_consen 34 IVEGTLPPG-----MLGGVFYIEIRKKDGKVL 60 (66)
T ss_pred EEEeecCCC-----ccCCeEEEEEEccCCeEE
Confidence 456888322 245789999999999986
No 9
>PRK15255 fimbrial outer membrane usher protein StdB; Provisional
Probab=28.32 E-value=82 Score=30.17 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=29.6
Q ss_pred eEEEeeCCCCCCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCce
Q 044200 5 ASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60 (132)
Q Consensus 5 s~VtLR~p~~~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqV 60 (132)
++|+|||-+.---++..=.|||||=-|. .. ..+-|.|.+-+++|++
T Consensus 285 A~V~V~QnG~~iY~t~VppGPF~I~Dlp--~~--------~~GdL~V~V~EadG~~ 330 (829)
T PRK15255 285 AQVTVSQNGRILYQTRVSPGPFELPDLS--QN--------ISGNLDVSVRESDGSV 330 (829)
T ss_pred cEEEEEECCEEEEEeEeCCCCeEeccCC--CC--------CCccEEEEEEEcCCCE
Confidence 6799999652101233344999997762 11 1236999999999984
No 10
>PF03306 AAL_decarboxy: Alpha-acetolactate decarboxylase; InterPro: IPR005128 Alpha-acetolactate decarboxylase plays a dual role in the cell: (i) it catalyzes the second step of the acetoin pathway, (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2 and thus potentially the internal pH of cells and (ii) it controls the pool of alpha-acetolactate during leucine and valine synthesis.; GO: 0047605 acetolactate decarboxylase activity, 0019751 polyol metabolic process, 0005789 endoplasmic reticulum membrane; PDB: 1XV2_B.
Probab=25.73 E-value=1.4e+02 Score=24.36 Aligned_cols=85 Identities=21% Similarity=0.264 Sum_probs=39.5
Q ss_pred cceeEEEeeCCCCCCC------CcEEEeeeeeEEEeeee----eecCCCCCCCCCCeeEEEEeCCCCceEeeecccCcee
Q 044200 2 GTVASVTLRQPSATPG------STITFHGRFDILWISAT----FLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLA 71 (132)
Q Consensus 2 GsVs~VtLR~p~~~~~------~~~tl~G~FEIlSLsGT----~~p~~~~~~~~~~~l~ISLA~~~GqViGG~V~G~liA 71 (132)
|..+.+++|-...... ..+.-.=.|+.=-++|| +.|.-....+. .++|+.+-+.| |-+||||..--+.
T Consensus 113 G~F~~v~~Rsv~~qe~Py~~l~e~~~~Q~~f~~~ni~GTlVGf~sP~~~~gi~v-~G~HlHFls~D-r~~GGHvld~~~~ 190 (220)
T PF03306_consen 113 GTFSSVKTRSVPKQEKPYPPLAEVAKNQPEFTFENIEGTLVGFYSPEYMGGINV-PGFHLHFLSDD-RTFGGHVLDFELD 190 (220)
T ss_dssp EEEEEEEEE------SS---THHHHTT--EEEEEEEEEEEEEEEE-GGGBTTB--CEEEEEEEETT-SS-EEEEEEEEEE
T ss_pred EEECeEEEEeccCccCCCCChhHHhccCceEEecCcEEEEEEEEcchhccccCC-ceEEEEEecCC-CCCCCCeEEEEec
Confidence 6677888886542101 01111224555445555 45554322222 36777777644 7789999887774
Q ss_pred cceEEEEeeecCCcceeecc
Q 044200 72 VGTVFVVAATFNNPSYHRLP 91 (132)
Q Consensus 72 at~V~Vv~~sF~~~~f~R~p 91 (132)
. ++|-+..+.+... ++|
T Consensus 191 ~--~~v~~~~~~~~~l-~lP 207 (220)
T PF03306_consen 191 N--GTVEIDVFDDFEL-ELP 207 (220)
T ss_dssp E--EEEEEEE-SEEEE-E--
T ss_pred e--EEEEEEecCCEEE-ECc
Confidence 4 4444555544433 566
No 11
>PRK15223 pilin outer membrane usher protein SafC; Provisional
Probab=25.50 E-value=1.2e+02 Score=29.00 Aligned_cols=47 Identities=21% Similarity=0.183 Sum_probs=28.7
Q ss_pred eEEEeeCCCCCCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCce
Q 044200 5 ASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60 (132)
Q Consensus 5 s~VtLR~p~~~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqV 60 (132)
++|+|||-+.---.+..=.|||+|=-|.-+ .-.+-|.|.+-++||++
T Consensus 285 A~V~V~QnG~~IY~t~VppGPF~I~Dl~~~---------~~~GdL~VtV~EadG~~ 331 (836)
T PRK15223 285 ARVEVKQNGYTIYNTTVAPGPFALRDLSVT---------DSSGDLHVTVWEADGST 331 (836)
T ss_pred cEEEEEECCEEEEEEEeCCCCeEecccccc---------CCCceEEEEEEEcCCCE
Confidence 678999965210123333499999554111 12346888888888876
No 12
>PRK15198 outer membrane usher protein FimD; Provisional
Probab=25.48 E-value=1.2e+02 Score=29.11 Aligned_cols=47 Identities=19% Similarity=0.211 Sum_probs=28.0
Q ss_pred eEEEeeCCCCCCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCce
Q 044200 5 ASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60 (132)
Q Consensus 5 s~VtLR~p~~~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqV 60 (132)
++|+|||-+.---++..=.|||||=-|.-+ .-.+-|.|.+-++||++
T Consensus 288 A~V~V~QnG~~iYst~VppGPF~I~Dl~~~---------~~~GdL~VtV~EadG~~ 334 (860)
T PRK15198 288 AKLTIRQNGYVIYQSYVSPGAFAITDLNPT---------SSSGDLDVTVDEKDGNQ 334 (860)
T ss_pred cEEEEEECCEEEEEeEeCCCCeEeccccCC---------CCCccEEEEEEECCCCE
Confidence 678999965210123334499999554111 12246888888888874
No 13
>PRK15304 putative fimbrial outer membrane usher protein; Provisional
Probab=25.16 E-value=95 Score=29.53 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=30.1
Q ss_pred eEEEeeCCCCCCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceE
Q 044200 5 ASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIM 61 (132)
Q Consensus 5 s~VtLR~p~~~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqVi 61 (132)
++|+|||-+.---++..=.|||+|=-|.-+ .-.+-|.|.+-++||++.
T Consensus 271 A~V~V~QnG~~iY~t~VppGPF~I~Dl~~~---------~~~GdL~V~V~EadG~~~ 318 (801)
T PRK15304 271 ARVEIRQSGQLIYSTLVPAGAFTLDDVPVI---------NGNTDLNVTVVETDGSTS 318 (801)
T ss_pred cEEEEEECCEEEEEeEcCCCCeEeccccCC---------CCCccEEEEEEEcCCCEE
Confidence 689999965210123333499999665211 123469999999999863
No 14
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]
Probab=25.05 E-value=91 Score=28.04 Aligned_cols=32 Identities=22% Similarity=0.148 Sum_probs=22.7
Q ss_pred EeeeeeecCCCCC-CCCCCeeEEEEeCCCC-ceE
Q 044200 30 WISATFLPQNAAY-LPLPNIFAISLAGPQG-QIM 61 (132)
Q Consensus 30 SLsGT~~p~~~~~-~~~~~~l~ISLA~~~G-qVi 61 (132)
-+.-||+|-+-.. ....-|+|+||.+.+| .+|
T Consensus 225 G~~aTFMpKP~~g~~GSGMH~H~Sl~~~dg~nlF 258 (443)
T COG0174 225 GLTATFMPKPFFGDNGSGMHVHQSLWDKDGGNLF 258 (443)
T ss_pred CCeEEEeCCCCCCCCCCceeEEEEEecCCCCccc
Confidence 3567899976432 1234599999999886 777
No 15
>PRK15193 outer membrane usher protein; Provisional
Probab=24.90 E-value=1.3e+02 Score=29.13 Aligned_cols=47 Identities=23% Similarity=0.240 Sum_probs=28.2
Q ss_pred eEEEeeCCCCCCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCce
Q 044200 5 ASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60 (132)
Q Consensus 5 s~VtLR~p~~~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqV 60 (132)
++|+|||-+.---++..=.|||||=-|.- . .-.+-|.|.+-+++|++
T Consensus 307 A~V~V~QnG~~iY~t~VPpGPF~I~Dl~~----~-----~~~GdL~VtV~EadG~~ 353 (876)
T PRK15193 307 AQVTIKQNGYTIYQTYVSPGAFEISDLYP----T-----SSSGDLLVEVKEADGSI 353 (876)
T ss_pred cEEEEEECCEEEEEEEeCCCCeEeccCcC----C-----CCCceEEEEEEeCCCCE
Confidence 57899996521012333349999955411 0 12346888888888875
No 16
>PRK15298 fimbrial outer membrane usher protein StiC; Provisional
Probab=24.61 E-value=1.3e+02 Score=28.92 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=27.1
Q ss_pred eEEEeeCCCCCCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCce
Q 044200 5 ASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60 (132)
Q Consensus 5 s~VtLR~p~~~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqV 60 (132)
++|+|||-+.---++..=.|||+|=-|.-+ .-.+-|.|.+-+++|++
T Consensus 294 A~V~V~QnG~~iy~t~VppGPF~I~Dl~~~---------~~~GdL~VtV~EadG~~ 340 (848)
T PRK15298 294 AQVIVRQNGYIAYQTAVSPGEFEINDMFPT---------GSNGDYDVTVKEADGSE 340 (848)
T ss_pred cEEEEEECCEEEEEeEeCCCCeEeccCcCC---------CCCceEEEEEEEcCCCE
Confidence 678999965210123334499999554110 11245777777777765
No 17
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=24.60 E-value=95 Score=20.47 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=16.6
Q ss_pred CCCCeeEEEEeCCCCceEe
Q 044200 44 PLPNIFAISLAGPQGQIMG 62 (132)
Q Consensus 44 ~~~~~l~ISLA~~~GqViG 62 (132)
...+...|.|.|.+|++|+
T Consensus 41 ~~~G~WrV~V~~~~G~~l~ 59 (66)
T PF11141_consen 41 DQPGDWRVEVVDEDGQVLG 59 (66)
T ss_pred CCCcCEEEEEEcCCCCEEE
Confidence 3568999999999999986
No 18
>PF06974 DUF1298: Protein of unknown function (DUF1298); InterPro: IPR009721 This entry represents the C terminus (approximately 170 residues) of a number of hypothetical plant proteins. O-acyltransferase WSD1 is a bifunctional wax ester synthase/diacylglycerol acyltransferase, which is involved in cuticular wax biosynthesis [].; GO: 0004144 diacylglycerol O-acyltransferase activity
Probab=24.59 E-value=1.9e+02 Score=21.49 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=32.5
Q ss_pred CCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceEeeecccCcee
Q 044200 17 GSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLA 71 (132)
Q Consensus 17 ~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqViGG~V~G~liA 71 (132)
...+.+.|. +|..+..+.... ...|.|++..-+|++.=|.++.+-++
T Consensus 87 ~~~l~~~G~-~v~~i~~~~~~~-------~~~L~itv~SY~g~l~~gi~ad~~~v 133 (153)
T PF06974_consen 87 QEPLYFAGA-RVEYIYPSPLGD-------GQALNITVFSYAGKLDFGIVADRDAV 133 (153)
T ss_pred hhheEECCe-eeEEEEeeeecC-------CcceEEEEEEeCCEEEEEEEEccccC
Confidence 467888887 677665543222 23799999999999977777665444
No 19
>PRK15294 putative fimbrial outer membrane usher protein SthC; Provisional
Probab=24.07 E-value=1.4e+02 Score=28.67 Aligned_cols=47 Identities=21% Similarity=0.099 Sum_probs=28.2
Q ss_pred eEEEeeCCCCCCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCce
Q 044200 5 ASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60 (132)
Q Consensus 5 s~VtLR~p~~~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqV 60 (132)
+.|+|||-+.---++..=.|||+|=-|. .- .-.+-|.|.+-+++|++
T Consensus 290 A~V~V~QnG~~iY~t~VppGPF~I~Dl~-----~~----~~~GdL~VtV~EadG~~ 336 (845)
T PRK15294 290 AQVTVEQNGYTIYKTNVPAGPFAINDLY-----PT----GGSGDLYVTIKESDGSE 336 (845)
T ss_pred cEEEEEECCEEEEEeEeCCCCeEecccc-----CC----CCCceEEEEEEeCCCCE
Confidence 5789999652101233334999995541 11 12346888888888875
No 20
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=23.59 E-value=68 Score=26.21 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=18.0
Q ss_pred ceeEEEeeCCCCCCCCcEEE-eeeeeEEEeee
Q 044200 3 TVASVTLRQPSATPGSTITF-HGRFDILWISA 33 (132)
Q Consensus 3 sVs~VtLR~p~~~~~~~~tl-~G~FEIlSLsG 33 (132)
+++||+||++.+-=-..+.+ .-+=||++|.|
T Consensus 4 ~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMG 35 (213)
T COG4136 4 CLKNVSLRLPGSCLLANVNFTIAKGEIVTLMG 35 (213)
T ss_pred eeeeeeecCCCceEEEeeeEEecCCcEEEEEC
Confidence 68999999987410000111 14457788766
No 21
>PRK15248 fimbrial outer membrane usher protein StbC; Provisional
Probab=23.20 E-value=1.5e+02 Score=28.51 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=26.2
Q ss_pred eEEEeeCCCCCCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCce
Q 044200 5 ASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60 (132)
Q Consensus 5 s~VtLR~p~~~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqV 60 (132)
+.|+|||-+.---.+..=.|||+|=-|. .- .-.+-|.|.+-+++|++
T Consensus 286 A~V~V~QnG~~iY~t~VppGPF~I~dl~-----~~----~~~GdL~VtV~EadG~~ 332 (853)
T PRK15248 286 AHVVVKQLGKVIYETNVPPGPFYIDDLY-----NT----RYQGDLEVEVIEASGKT 332 (853)
T ss_pred cEEEEEECCEEEEEeEcCCCCeEeccCc-----CC----CCCceEEEEEEECCCCE
Confidence 5788998542001122334999995541 10 11245777777777764
No 22
>PRK15217 fimbrial outer membrane usher protein; Provisional
Probab=23.00 E-value=1.5e+02 Score=28.43 Aligned_cols=47 Identities=19% Similarity=0.113 Sum_probs=28.2
Q ss_pred eEEEeeCCCCCCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCce
Q 044200 5 ASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60 (132)
Q Consensus 5 s~VtLR~p~~~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqV 60 (132)
++|+|||-+.---++..=.|||+|=-|.-+ .-.+-|.|.+-+++|++
T Consensus 273 A~V~V~QnG~~iy~t~VppGPF~I~dl~~~---------~~~GdL~V~V~EadG~~ 319 (826)
T PRK15217 273 ALVTIEQNGFVVYQKEVPPGPFAIADLQLA---------GGGADLDVSVKEADGSV 319 (826)
T ss_pred cEEEEEECCEEEEEEEeCCCCeEeccccCC---------CCCceEEEEEEECCCCE
Confidence 578899865210123333499999554111 12246888888888876
No 23
>PRK15207 long polar fimbrial outer membrane usher protein LpfC; Provisional
Probab=21.99 E-value=1.6e+02 Score=28.34 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=28.3
Q ss_pred eEEEeeCCCCCCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCce
Q 044200 5 ASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60 (132)
Q Consensus 5 s~VtLR~p~~~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqV 60 (132)
++|+|||-+.---++..=.|||+|=-|. .- .-.+-|.|.+-+++|++
T Consensus 303 A~V~V~QnG~~iY~t~VppGPF~I~dl~-----~~----~~~GdL~VtV~EadG~~ 349 (842)
T PRK15207 303 AEVSIEQNGYVIYRTFVQPGAFEINDLY-----PT----SNSGDLTVIIKEADGSE 349 (842)
T ss_pred cEEEEEECCEEEEEEEeCCCCeEecccc-----CC----CCCceEEEEEEeCCCCE
Confidence 5788999652101233334999995541 11 12346888888888875
No 24
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=21.21 E-value=98 Score=21.26 Aligned_cols=24 Identities=25% Similarity=0.600 Sum_probs=18.9
Q ss_pred CCCeeEEEEeCCCCceEeeecccC
Q 044200 45 LPNIFAISLAGPQGQIMGGSVVGP 68 (132)
Q Consensus 45 ~~~~l~ISLA~~~GqViGG~V~G~ 68 (132)
..+.+.+-+-..+++++|.++.|.
T Consensus 47 ~~g~~Kli~d~~t~~IlGa~~vg~ 70 (110)
T PF02852_consen 47 TEGFVKLIFDKKTGRILGAQIVGP 70 (110)
T ss_dssp TEEEEEEEEETTTTBEEEEEEEET
T ss_pred cceeeEEEEEeeccceeeeeeecC
Confidence 456777766666999999999885
No 25
>PRK15213 fimbrial outer membrane usher protein PefC; Provisional
Probab=21.16 E-value=1.4e+02 Score=28.46 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=29.0
Q ss_pred eEEEeeCCCCCCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCce
Q 044200 5 ASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60 (132)
Q Consensus 5 s~VtLR~p~~~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqV 60 (132)
++|+|||-+.---++..=.|||||=-|.-+ . .+-|.|.+-+++|++
T Consensus 274 A~V~V~QnG~~iy~t~VppGpF~I~dlp~~--~--------~Gdl~V~V~EadG~~ 319 (797)
T PRK15213 274 SRVTISQNGYTLYSEVVPAGPFQLDDVPLV--G--------SGDLTVTVEEEDGHK 319 (797)
T ss_pred cEEEEEECCEEEEEEEeCCCCeEeccCCCC--C--------CceEEEEEEECCCcE
Confidence 578899865210122333499999766211 1 136999999999986
No 26
>PRK15284 putative fimbrial outer membrane usher protein StfC; Provisional
Probab=21.12 E-value=1.3e+02 Score=29.11 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=29.4
Q ss_pred eEEEeeCCCCCCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCce
Q 044200 5 ASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60 (132)
Q Consensus 5 s~VtLR~p~~~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqV 60 (132)
++|+|||-+.---++..=.|||||=-|.- . ..+-|.|.+-+++|++
T Consensus 305 A~VtV~QnG~~IY~t~VppGPF~I~Dl~~----~------~~GdL~VtV~EadG~~ 350 (881)
T PRK15284 305 AKVTVSQMGRVIYETQVPAGPFRIQDIGD----S------VSGTLHVRIEEQNGQV 350 (881)
T ss_pred cEEEEEECCEEEEEEEcCCCCceeccCCC----C------CCCcEEEEEEECCCCE
Confidence 57899996521012333349999977621 1 1246999999999984
Done!