Query 044200
Match_columns 132
No_of_seqs 118 out of 342
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 21:42:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p6y_A Hypothetical protein VC 99.8 4.7E-20 1.6E-24 137.4 10.4 84 2-94 38-121 (142)
2 2hx0_A Putative DNA-binding pr 99.8 2.1E-19 7.2E-24 135.6 10.8 84 2-94 54-137 (154)
3 2dt4_A Hypothetical protein PH 99.8 2.9E-19 9.8E-24 132.8 6.1 87 2-94 44-132 (143)
4 2h6l_A Hypothetical protein; N 99.8 3.9E-19 1.3E-23 132.4 6.2 86 2-94 44-132 (146)
5 3htn_A Putative DNA binding pr 99.7 4.6E-18 1.6E-22 127.7 7.4 88 2-94 50-139 (149)
6 3hwu_A Putative DNA-binding pr 99.6 5.6E-15 1.9E-19 110.5 7.0 88 2-94 47-136 (147)
7 3fcg_A F1 capsule-anchoring pr 68.9 9.6 0.00033 26.2 5.0 47 5-60 27-73 (90)
8 4i95_A Putative uncharacterize 62.1 8.3 0.00029 28.9 3.9 26 2-30 45-70 (142)
9 1xv2_A ALDC, hypothetical prot 38.2 54 0.0019 25.9 5.3 86 2-92 119-214 (237)
10 3rfz_B Outer membrane usher pr 37.5 64 0.0022 29.6 6.3 47 5-60 264-310 (843)
11 4gzv_A Hypothetical protein; A 35.1 41 0.0014 25.1 3.9 26 2-30 45-70 (142)
12 2k8e_A UPF0339 protein YEGP; p 26.2 66 0.0023 23.2 3.7 32 20-64 15-46 (130)
13 3fip_A Outer membrane usher pr 24.5 70 0.0024 27.5 4.1 46 5-60 129-174 (493)
No 1
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.82 E-value=4.7e-20 Score=137.41 Aligned_cols=84 Identities=23% Similarity=0.335 Sum_probs=76.1
Q ss_pred cceeEEEeeCCCCCCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceEeeecccCceecceEEEEeee
Q 044200 2 GTVASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVVAAT 81 (132)
Q Consensus 2 GsVs~VtLR~p~~~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqViGG~V~G~liAat~V~Vv~~s 81 (132)
|+|++++||+|+. ..+++++|+|||+||+||+.+.. .||||+++|+||||+||||+..+++..++||++..
T Consensus 38 Gsl~~~~l~~~~~--~~~~~~~g~~EIlsl~Gti~~~~-------~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~ 108 (142)
T 2p6y_A 38 GCLSTLHIRLADS--VSTLQVSAPFEILSLSGTLTYQH-------CHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHH 108 (142)
T ss_dssp EEEEEEEEECTTS--SCEEEECSCEEEEEEEEEECSSC-------EEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEE
T ss_pred EEEEeEEEECCCC--CccEecCCcEEEEEeEEEEeCCC-------CEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEE
Confidence 7889999999986 34789999999999999999862 59999999999999999999888888999999999
Q ss_pred cCCcceeeccCcc
Q 044200 82 FNNPSYHRLPVQD 94 (132)
Q Consensus 82 F~~~~f~R~p~~~ 94 (132)
|.++.|.|+||++
T Consensus 109 ~~~~~~~R~~D~e 121 (142)
T 2p6y_A 109 YPQHHFTREFDPN 121 (142)
T ss_dssp CTTEEEEEEEETT
T ss_pred ccCCeEEEeeCCC
Confidence 9999999999875
No 2
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.80 E-value=2.1e-19 Score=135.63 Aligned_cols=84 Identities=19% Similarity=0.389 Sum_probs=77.0
Q ss_pred cceeEEEeeCCCCCCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceEeeecccCceecceEEEEeee
Q 044200 2 GTVASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVVAAT 81 (132)
Q Consensus 2 GsVs~VtLR~p~~~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqViGG~V~G~liAat~V~Vv~~s 81 (132)
|+|++++||+++. ..+++|+|+|||+||+||+.+.. .||||+++|+||||+||||+..+++..++||++..
T Consensus 54 Gsl~~~~l~~~~~--~~~~~~~g~~EIlsl~Gti~~~~-------~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~ 124 (154)
T 2hx0_A 54 GSLTDVALRYAGQ--EATTSLTGTFEVISLNGTLELTG-------EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGE 124 (154)
T ss_dssp EEEEEEEEECTTC--SSCEEEEEEEEEEEEEEEEETTE-------EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEE
T ss_pred eeeEEeEEEccCC--CccEecCCcEEEEEeeeeEeCCC-------CEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEE
Confidence 7889999999986 34889999999999999999962 59999999999999999999888888999999999
Q ss_pred cCCcceeeccCcc
Q 044200 82 FNNPSYHRLPVQD 94 (132)
Q Consensus 82 F~~~~f~R~p~~~ 94 (132)
|.+..|.|+||++
T Consensus 125 ~~~~~~~R~~D~e 137 (154)
T 2hx0_A 125 LPALTFSRQPCAI 137 (154)
T ss_dssp CTTEEEEEEECTT
T ss_pred ccCceEEEecCCC
Confidence 9999999999875
No 3
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.77 E-value=2.9e-19 Score=132.76 Aligned_cols=87 Identities=14% Similarity=0.214 Sum_probs=74.9
Q ss_pred cceeEEEeeCCCCCC--CCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceEeeecccCceecceEEEEe
Q 044200 2 GTVASVTLRQPSATP--GSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVVA 79 (132)
Q Consensus 2 GsVs~VtLR~p~~~~--~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqViGG~V~G~liAat~V~Vv~ 79 (132)
|+|++|+||+++... -..++++|+|||+||+||+.+.+. .+..||||+++|+||||+||||...+ .. ++||++
T Consensus 44 Gsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g---~p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i 118 (143)
T 2dt4_A 44 GTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDG---EPFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFL 118 (143)
T ss_dssp EEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETT---EEEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEE
T ss_pred EEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCC---CceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEE
Confidence 789999999987421 136889999999999999998632 34579999999999999999999888 56 999999
Q ss_pred eecCCcceeeccCcc
Q 044200 80 ATFNNPSYHRLPVQD 94 (132)
Q Consensus 80 ~sF~~~~f~R~p~~~ 94 (132)
..|.+..|.|+| ++
T Consensus 119 ~~~~~~~~~R~~-~e 132 (143)
T 2dt4_A 119 QELKGEKIERKP-TK 132 (143)
T ss_dssp EEEEESCCEEBC-CT
T ss_pred EEcCCCeEEEeC-CC
Confidence 999999999999 54
No 4
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.77 E-value=3.9e-19 Score=132.45 Aligned_cols=86 Identities=14% Similarity=0.141 Sum_probs=75.8
Q ss_pred cceeEEEeeCCCCCCC---CcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceEeeecccCceecceEEEE
Q 044200 2 GTVASVTLRQPSATPG---STITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVV 78 (132)
Q Consensus 2 GsVs~VtLR~p~~~~~---~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqViGG~V~G~liAat~V~Vv 78 (132)
|+|++++||+++.. . .+++++|+|||+||+||+.+.+. .+..||||+|+ +||+|+||||...++ .++||+
T Consensus 44 Gsl~~~~l~~~~~~-~~~y~~~~~~g~~EIlsl~Gti~~~dg---~p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evv 116 (146)
T 2h6l_A 44 GAVRSAVIGYYDQE-KKEYVKKELMEPLEILSLSGNVSMKDS---KPFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVF 116 (146)
T ss_dssp EEEEEEEEEEEETT-TTEEEEEEECSCEEEEEEEEEEEEETT---EEEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEE
T ss_pred EEEEEEEEECCCCC-CcceeEEEecCcEEEEEeEEEEECCCC---CceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEE
Confidence 78999999998752 2 26899999999999999998632 34579999999 999999999999995 799999
Q ss_pred eeecCCcceeeccCcc
Q 044200 79 AATFNNPSYHRLPVQD 94 (132)
Q Consensus 79 ~~sF~~~~f~R~p~~~ 94 (132)
+.+|.+..|.|+||++
T Consensus 117 i~~~~~~~~~R~~D~e 132 (146)
T 2h6l_A 117 VLPLSGEAPERAFDEQ 132 (146)
T ss_dssp EEECBSCCCBEEECTT
T ss_pred EEEcCCCcEEEeECCC
Confidence 9999999999999875
No 5
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.73 E-value=4.6e-18 Score=127.69 Aligned_cols=88 Identities=16% Similarity=0.224 Sum_probs=76.0
Q ss_pred cceeEEEeeCCCCCC--CCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceEeeecccCceecceEEEEe
Q 044200 2 GTVASVTLRQPSATP--GSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVVA 79 (132)
Q Consensus 2 GsVs~VtLR~p~~~~--~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqViGG~V~G~liAat~V~Vv~ 79 (132)
|++++|+||+++... -.+++++|+|||+||+||+.+.+. .+..||||+|+|++|+|+||||... ++..++||+|
T Consensus 50 Gsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG---~p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i 125 (149)
T 3htn_A 50 GAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE---QVYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVV 125 (149)
T ss_dssp EEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT---EEEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEE
T ss_pred EEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC---CceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEE
Confidence 889999999976421 127899999999999999999632 3457999999999999999999988 7889999999
Q ss_pred eecCCcceeeccCcc
Q 044200 80 ATFNNPSYHRLPVQD 94 (132)
Q Consensus 80 ~sF~~~~f~R~p~~~ 94 (132)
..+.. .+.|.+|++
T Consensus 126 ~~~~~-~~~R~~D~~ 139 (149)
T 3htn_A 126 EDYSE-RISRTYNPD 139 (149)
T ss_dssp EECCS-CCEEEEETT
T ss_pred EEcCC-eeEEeeCCc
Confidence 99988 899998875
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.56 E-value=5.6e-15 Score=110.47 Aligned_cols=88 Identities=10% Similarity=0.103 Sum_probs=71.4
Q ss_pred cceeEEEeeCCCCCC--CCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceEeeecccCceecceEEEEe
Q 044200 2 GTVASVTLRQPSATP--GSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVVA 79 (132)
Q Consensus 2 GsVs~VtLR~p~~~~--~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqViGG~V~G~liAat~V~Vv~ 79 (132)
|++++++||..+... -...+++ +|||+||+||+.+.+. .+..||||+++|.+|+|+|||+....+...|+||++
T Consensus 47 Gsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG---~p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i 122 (147)
T 3hwu_A 47 GFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEG---KPSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITV 122 (147)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETT---EEEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEE
T ss_pred ecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCC---CceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEE
Confidence 789999999765321 1256788 8999999999998542 345699999999999999999998855445999999
Q ss_pred eecCCcceeeccCcc
Q 044200 80 ATFNNPSYHRLPVQD 94 (132)
Q Consensus 80 ~sF~~~~f~R~p~~~ 94 (132)
..+.. .|.|.+|++
T Consensus 123 ~~~~~-~~~R~~D~~ 136 (147)
T 3hwu_A 123 TVYPQ-RLDRFVDPE 136 (147)
T ss_dssp EEESS-CCBEEEETT
T ss_pred EEcCC-eEEEEECCc
Confidence 98764 999999875
No 7
>3fcg_A F1 capsule-anchoring protein; beta barrel, beta strand swapping, cell membrane, cell outer membrane, cell projection, fimbrium, membrane; 2.85A {Yersinia pestis}
Probab=68.87 E-value=9.6 Score=26.16 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=29.6
Q ss_pred eEEEeeCCCCCCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCce
Q 044200 5 ASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60 (132)
Q Consensus 5 s~VtLR~p~~~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqV 60 (132)
++|+|||-+.---++..=.|||+|--|.-+ ...+-|.|.+-+++|++
T Consensus 27 A~V~v~qnG~~iy~~~VppGpF~I~dl~~~---------~~~Gdl~V~v~eadG~~ 73 (90)
T 3fcg_A 27 ARVEVLRDGYTVSNELVPSGPFELANLPLG---------GGSGELKVIIHESDGTK 73 (90)
T ss_dssp EEEEEESSSCEEEEEEECSEEEEECCCC------------CCEEEEEEEECTTSCE
T ss_pred cEEEEEECCEEEEEeEeCCCCeEEcCCccc---------CCceeEEEEEEECCCCE
Confidence 679999955210112233499999654211 23468999999999986
No 8
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=62.14 E-value=8.3 Score=28.91 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=22.1
Q ss_pred cceeEEEeeCCCCCCCCcEEEeeeeeEEE
Q 044200 2 GTVASVTLRQPSATPGSTITFHGRFDILW 30 (132)
Q Consensus 2 GsVs~VtLR~p~~~~~~~~tl~G~FEIlS 30 (132)
|+..|++++ |++ +++++..|.|||.|
T Consensus 45 gtF~Ni~m~-~~~--~aiIt~~GtY~~~S 70 (142)
T 4i95_A 45 GRIVNFTIR-PGT--DAIITGYGTYRQIS 70 (142)
T ss_dssp SEEEEEECC-TTS--CCEEEEEEEEEEEE
T ss_pred CcEEEEEEe-cCC--CcEEEEeEEEEecC
Confidence 788999999 443 68999999999987
No 9
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=38.18 E-value=54 Score=25.86 Aligned_cols=86 Identities=21% Similarity=0.172 Sum_probs=45.9
Q ss_pred cceeEEEeeCCCCC--CCC----cEEEeeeeeEEEee----eeeecCCCCCCCCCCeeEEEEeCCCCceEeeecccCcee
Q 044200 2 GTVASVTLRQPSAT--PGS----TITFHGRFDILWIS----ATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLA 71 (132)
Q Consensus 2 GsVs~VtLR~p~~~--~~~----~~tl~G~FEIlSLs----GT~~p~~~~~~~~~~~l~ISLA~~~GqViGG~V~G~liA 71 (132)
|+.++|+.|-.... |-. .+.-.=.|+.=-.+ |-++|.-..+. ...++|+.+.+.|- -+||||..--+.
T Consensus 119 G~F~~v~~R~vp~Q~~Py~~l~e~~~~Q~~f~~~~v~GTivGF~tP~~~~Gi-~v~G~HlHFisdDr-~~GGHVldf~~~ 196 (237)
T 1xv2_A 119 GTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGV-GSAGFHIHFADDER-AYGGHVLDFEVD 196 (237)
T ss_dssp EEEEEEEEECCCCCCSSCCCTHHHHTTCCEEEEEEEEEEEEEEEECGGGBTT-BCSEEEEEEEETTS-SCEEEEEEEEEE
T ss_pred EEeCeEEEEecCCCCCCCCCHHHHhcCCceEEEeccEEEEEEEecchhhccc-CCceeEEEEEcCCC-CCCcceEEEEec
Confidence 67888888865321 100 00111224444444 44556542221 23478888887654 489999987665
Q ss_pred cceEEEEeeecCCcceeeccC
Q 044200 72 VGTVFVVAATFNNPSYHRLPV 92 (132)
Q Consensus 72 at~V~Vv~~sF~~~~f~R~p~ 92 (132)
..+| -+..+.+... ++|.
T Consensus 197 ~~~~--~~~~~~~~~l-~lP~ 214 (237)
T 1xv2_A 197 DVVV--EIQNFETFQQ-HFPV 214 (237)
T ss_dssp EEEE--EEEECSEEEE-ECCT
T ss_pred ceEE--EEeecccEEE-ECCC
Confidence 5444 4455543322 6665
No 10
>3rfz_B Outer membrane usher protein, type 1 fimbrial SYN; beta-barrel, pilus assembly, outer-membrane, cell adhesion-T protein-chaperone complex; 2.80A {Escherichia coli} PDB: 3ohn_A 1zdv_A
Probab=37.48 E-value=64 Score=29.59 Aligned_cols=47 Identities=19% Similarity=0.164 Sum_probs=28.0
Q ss_pred eEEEeeCCCCCCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCce
Q 044200 5 ASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60 (132)
Q Consensus 5 s~VtLR~p~~~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqV 60 (132)
++|+|||-+.---++..=.|||||=-|. +. .-.+-|.|.+-++||++
T Consensus 264 A~V~V~QnG~~iy~t~VppGpF~I~Dl~----~~-----~~~GdL~V~V~EadG~~ 310 (843)
T 3rfz_B 264 AQVTIKQNGYDIYNSTVPPGPFTINDIY----AA-----GNSGDLQVTIKEADGST 310 (843)
T ss_dssp EEEEEEETTEEEEEEEECSEEEEECCCC----CC-----TTSCCEEEEEECSSSCE
T ss_pred cEEEEEECCEEEEEEEeCCCceEecCCC----CC-----CCCceEEEEEEECCCCE
Confidence 6799999542101223334999995431 11 12356888888888876
No 11
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=35.15 E-value=41 Score=25.08 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=21.1
Q ss_pred cceeEEEeeCCCCCCCCcEEEeeeeeEEE
Q 044200 2 GTVASVTLRQPSATPGSTITFHGRFDILW 30 (132)
Q Consensus 2 GsVs~VtLR~p~~~~~~~~tl~G~FEIlS 30 (132)
|+..|++++... +++++..|.|||.|
T Consensus 45 gtF~N~~m~~~~---~aiIt~yGtY~l~S 70 (142)
T 4gzv_A 45 GRIVNFTIIPGA---DAIITGYGTYKQLT 70 (142)
T ss_dssp SEEEEEECCTTS---CCEEEEEEEEEEEE
T ss_pred CcEEEEEEeCCC---CcEEEEeEEEEecC
Confidence 778888885533 56999999999987
No 12
>2k8e_A UPF0339 protein YEGP; protein structure initiative (PSI), northeast structur genomics consortium (NESG), ontario centre for structural P (OCSP); NMR {Escherichia coli} SCOP: d.348.1.1 d.348.1.1
Probab=26.24 E-value=66 Score=23.17 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=24.8
Q ss_pred EEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceEeee
Q 044200 20 ITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGS 64 (132)
Q Consensus 20 ~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqViGG~ 64 (132)
+++.|+|||.. ...+.++.-|-..+|+||.=.
T Consensus 15 ~~Mag~FEi~~-------------~~~G~~rfrLka~NGeiI~sS 46 (130)
T 2k8e_A 15 VIMAGWFELSK-------------SSDNQFRFVLKAGNGETILTS 46 (130)
T ss_dssp CCCCCEEEEEE-------------CTTCCEEEEEECTTSCEEEEC
T ss_pred ceeeeeEEEEE-------------cCCCCEEEEEEeCCCCEEEEc
Confidence 45678999976 234579999999999998743
No 13
>3fip_A Outer membrane usher protein PAPC; beta barrel, protein translocase, cell membrane, cell outer fimbrium, transmembrane, transport; 3.15A {Escherichia coli} PDB: 2vqi_A*
Probab=24.49 E-value=70 Score=27.52 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=28.6
Q ss_pred eEEEeeCCCCCCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCce
Q 044200 5 ASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60 (132)
Q Consensus 5 s~VtLR~p~~~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqV 60 (132)
++|+|||-+.---.+..=.|||||=-|. +. ..+-|.|.+-++||++
T Consensus 129 A~V~v~qnG~~iy~t~VppGpF~i~dl~----~~------~~Gdl~V~v~EadG~~ 174 (493)
T 3fip_A 129 ARVVVSQQGRVLYDSMVPAGPFSIQDLD----SS------VRGRLDVEVIEQNGRK 174 (493)
T ss_dssp CEEEEEETTEEEEEEECCSEEECCCCSC----SC------CCSEEEEEEECTTSCB
T ss_pred cEEEEEECCEEEEEEEeCCCCeEecCCC----CC------CceeEEEEEEECCCcE
Confidence 5788888542001122234999996652 11 2357999999999976
Done!