Query 044201
Match_columns 558
No_of_seqs 67 out of 69
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 12:24:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 99.6 1.9E-16 4.2E-21 154.1 2.7 244 267-546 8-329 (351)
2 PF01531 Glyco_transf_11: Glyc 84.9 1.5 3.2E-05 44.2 5.1 30 265-294 37-66 (298)
3 KOG3849 GDP-fucose protein O-f 53.1 7.5 0.00016 41.2 1.6 67 265-336 34-104 (386)
4 PF05830 NodZ: Nodulation prot 51.7 7.3 0.00016 41.4 1.2 239 265-541 9-279 (321)
5 PF01320 Colicin_Pyocin: Colic 35.7 25 0.00054 31.0 1.9 30 430-463 46-75 (85)
6 PF06900 DUF1270: Protein of u 31.7 14 0.0003 30.4 -0.3 20 24-43 5-24 (53)
7 PRK15367 type III secretion sy 31.2 57 0.0012 35.7 4.1 53 24-77 115-171 (395)
8 PF14399 Transpep_BrtH: NlpC/p 25.4 81 0.0018 31.1 3.7 54 413-484 53-106 (317)
9 PF10917 DUF2708: Protein of u 25.0 28 0.0006 27.7 0.3 15 24-38 4-18 (43)
10 PF14642 FAM47: FAM47 family 24.3 51 0.0011 34.4 2.1 29 441-470 132-160 (258)
11 PF05620 DUF788: Protein of un 24.1 89 0.0019 29.7 3.6 28 56-83 63-90 (170)
12 PF02602 HEM4: Uroporphyrinoge 23.3 69 0.0015 30.0 2.7 49 450-498 102-151 (231)
13 cd03002 PDI_a_MPD1_like PDI fa 23.3 63 0.0014 26.5 2.2 34 121-154 54-87 (109)
14 PF03610 EIIA-man: PTS system 22.8 1.9E+02 0.0042 25.0 5.2 62 406-482 9-73 (116)
15 PF06245 DUF1015: Protein of u 22.0 77 0.0017 34.1 3.0 54 408-476 152-210 (416)
16 PF12841 YvrJ: YvrJ protein fa 21.5 47 0.001 25.5 1.0 18 17-34 1-18 (38)
17 PRK15447 putative protease; Pr 20.6 1.6E+02 0.0035 30.2 4.9 74 401-485 7-82 (301)
18 cd02992 PDI_a_QSOX PDIa family 20.3 66 0.0014 27.9 1.8 33 121-153 58-90 (114)
19 KOG3705 Glycoprotein 6-alpha-L 20.3 1.5E+02 0.0032 33.4 4.8 142 374-533 322-469 (580)
20 cd06592 GH31_glucosidase_KIAA1 20.0 1.7E+02 0.0037 29.9 4.8 48 407-461 28-81 (303)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=99.61 E-value=1.9e-16 Score=154.09 Aligned_cols=244 Identities=24% Similarity=0.314 Sum_probs=122.3
Q ss_pred CCcchhHHHHHhhccccccccceeeeecccccccccCCCCCCCccccceeecchhhhcccc-ceeecchhhhchhhhhcc
Q 044201 267 KGMNQYMWSFLCGLGEAIYLNRTFVMDLSVCLAATYNPSNKDEEGKDFRYYFDFEHLKEVA-SVVEEGEFLRDWKKWDRG 345 (558)
Q Consensus 267 kgm~H~~~SllCAL~EA~yLNRTfVMdl~mCLs~~~n~~g~~eegkd~r~yfD~ehl~~tv-~VIe~~qF~~dw~~W~~~ 345 (558)
.|.|.|.-+|+-|+-=|+.||||||||- .+.....+ +......-.|.-+||++||++.+ +||+-.+|+. ..|...
T Consensus 8 GGfnNQr~~~~~a~~~A~~LnRTLVLPp-~~~~~~~~-~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~--~~~~~~ 83 (351)
T PF10250_consen 8 GGFNNQRMGFENAVVFAKALNRTLVLPP-FIKHYHWK-DQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLP--KHWDEV 83 (351)
T ss_dssp SSHHHHHHHHHHHHHHHHHHT-EEE--E-EEEESSSS-----EEEEEHHHHB-HHHHTTTS--EE-HHHHHH--HHS-GG
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEcCC-cccccccc-ccccccccChhhhccHHHHHHHhhCceehheecc--chhccc
Confidence 4899999999999999999999999987 33332222 11112334578899999999999 9999888872 223331
Q ss_pred cc---------------------------CccCceeeeEE-eeeeee-ecc------------cccceEEeccCCCCCCC
Q 044201 346 HK---------------------------RKVPVKKVVTH-KVTPVQ-LKK------------DKSTIIWRQFDSPEPEN 384 (558)
Q Consensus 346 ~~---------------------------~kL~~r~v~~~-~Vtp~~-l~~------------~k~~li~rkf~~~ep~n 384 (558)
.. ++......... ...+.- +.+ ....+.+..+...-+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 163 (351)
T PF10250_consen 84 FRLQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDN 163 (351)
T ss_dssp G-EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--
T ss_pred cchhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhc
Confidence 00 01111111000 111100 111 01222233333331221
Q ss_pred ceEEEecccccccccccchhhhhhHHHHHHHHHHhcccC---CCCcEEEeecC-cc------------------------
Q 044201 385 YWYRVCEGQAAKYIQRPWHALWKSKRLMNIVTEISGQMD---WDFDAVHVVRG-EK------------------------ 436 (558)
Q Consensus 385 yWy~vCeg~~~s~i~~P~~~l~kskrLm~iv~~I~~rm~---~DfDavHVrRG-Dk------------------------ 436 (558)
++ ...+++ .|..++.|+++|+++..++. ..|-|||+|+| |+
T Consensus 164 ~~--------~~~~~r---~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~~~~C~~~~~~~~~~~~~~~~~~~~ 232 (351)
T PF10250_consen 164 YL--------DRDLQR---YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDWFSACEFKGERHLLASPRCWGKKSI 232 (351)
T ss_dssp GG--------GGGGGG---G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHHHHHHCT-T----TTTHHHH-GGGT
T ss_pred cc--------CccceE---EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCchHhhcccCCchHHHHHhHhhccccc
Confidence 11 122333 77888999999999998876 99999999999 88
Q ss_pred ---c-cccccCCCCCCCCCHHHHHHHhhcccC--CCcEEEEecCCCC--ccchhhhhcceEEeeccchHHHhhcCCcccc
Q 044201 437 ---A-QNKELWPHLDVDTSPDALLTKLQGMIH--PWRNLYIATNEPF--YNYFDKLRSQYKVHLLDDYKELWSNTSEWYN 508 (558)
Q Consensus 437 ---~-~nk~l~P~LD~DtspE~i~~~i~~~i~--~GR~LYIATnE~~--~~fFdpLk~kY~vh~LddFk~Lw~~~SeWy~ 508 (558)
. ......| +.+.++..|++.+. ..++||||||+.. ...+++|++.|.-.+ .++.+. ...
T Consensus 233 ~~~~~~~~~~~p------~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~---~~~~~~----~~~ 299 (351)
T PF10250_consen 233 NPEKKRRNGCCP------STPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVV---TKDDLL----SHE 299 (351)
T ss_dssp T-----HHHHS--------HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHH---GGGT------EE-
T ss_pred cchhhhhcCCCC------ChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhE---eccccC----CHH
Confidence 1 0112223 23455566665554 4599999999943 356788888777444 111111 112
Q ss_pred cccccCCCcccccCCchhhhhhHHhHhccceeEEeecc
Q 044201 509 ETTLLNDGRPVEFDGYMRVAVDTEVFYRAKTRVETFYN 546 (558)
Q Consensus 509 Et~~Ln~G~PV~fdgYmr~mVDteVf~rGK~~VeTf~~ 546 (558)
| ...+++.+..|||++|.+++..||+|..+
T Consensus 300 ~--------~~~~~~~~~a~vD~~i~~~s~~Figt~~S 329 (351)
T PF10250_consen 300 E--------LEPLNDDQLAMVDQEICSRSDVFIGTCGS 329 (351)
T ss_dssp ---------S-----S--HHHHHHHHHHSSEEEE-TT-
T ss_pred H--------hhhccccchhHHHHHHHhcCCEEEecCcc
Confidence 2 22444577899999999999999999876
No 2
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=84.93 E-value=1.5 Score=44.19 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=25.1
Q ss_pred cCCCcchhHHHHHhhccccccccceeeeec
Q 044201 265 YCKGMNQYMWSFLCGLGEAIYLNRTFVMDL 294 (558)
Q Consensus 265 ~Ckgm~H~~~SllCAL~EA~yLNRTfVMdl 294 (558)
...++|-|++-+-..++.|+.++|+.+++.
T Consensus 37 ~~g~LGNqmfqya~l~~lak~~~~~~~i~~ 66 (298)
T PF01531_consen 37 LNGRLGNQMFQYASLYGLAKLNGRTAFIPI 66 (298)
T ss_pred EcchHHHHHhHHHHHHHHHHhcCCccccch
Confidence 467899999999899999998888877654
No 3
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=53.11 E-value=7.5 Score=41.25 Aligned_cols=67 Identities=30% Similarity=0.481 Sum_probs=46.4
Q ss_pred cCCCcc---hhHHHHHhhccccccccceeeeecccccccccCCCCCCCc-cccceeecchhhhccccceeecchhh
Q 044201 265 YCKGMN---QYMWSFLCGLGEAIYLNRTFVMDLSVCLAATYNPSNKDEE-GKDFRYYFDFEHLKEVASVVEEGEFL 336 (558)
Q Consensus 265 ~Ckgm~---H~~~SllCAL~EA~yLNRTfVMdl~mCLs~~~n~~g~~ee-gkd~r~yfD~ehl~~tv~VIe~~qF~ 336 (558)
+|--|| .|---||=.|+=|.-||||||+|-=+ .|- .+.... --.|++||-.|-|++---||.-.+|.
T Consensus 34 yCPCMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwi----Ey~-~pe~~n~~vpf~~yF~vepl~~YhRVitm~dFm 104 (386)
T KOG3849|consen 34 YCPCMGRFGNQADHFLGSLAFAKALNRTLVLPPWI----EYK-HPETKNLMVPFEFYFQVEPLAKYHRVITMQDFM 104 (386)
T ss_pred EccccccccchHHHHHHHHHHHHHhcccccCCcch----hcc-CCcccccccchhheeecccHhhhhhheeHHHHH
Confidence 466664 45566777788899999999998644 222 111100 13489999999999999999766664
No 4
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=51.67 E-value=7.3 Score=41.39 Aligned_cols=239 Identities=16% Similarity=0.277 Sum_probs=104.3
Q ss_pred cCCCcchhHHHHHhhccccccccceeeeecc-cccccccCCCCCCCccccceeecchhhhcccccee-ec--ch------
Q 044201 265 YCKGMNQYMWSFLCGLGEAIYLNRTFVMDLS-VCLAATYNPSNKDEEGKDFRYYFDFEHLKEVASVV-EE--GE------ 334 (558)
Q Consensus 265 ~Ckgm~H~~~SllCAL~EA~yLNRTfVMdl~-mCLs~~~n~~g~~eegkd~r~yfD~ehl~~tv~VI-e~--~q------ 334 (558)
+|.|||--+|||--|-.=|+-+|||||+|-+ -|....-. --+|.-+|+.-.=-..|+|| |. .|
T Consensus 9 ~r~g~gd~l~~la~aw~~a~~~~r~l~idw~~s~~~~~~f-------~n~f~~ffepv~~i~~~~~~~~d~i~~~~~~g~ 81 (321)
T PF05830_consen 9 RRTGLGDCLWSLAAAWRYAKRTGRTLVIDWRGSCYLDQPF-------TNAFPVFFEPVEDIAGVRVICDDRINQFSFPGP 81 (321)
T ss_dssp --S-HHHHHHHHHHHHHHHHHHT-EEEEE-BT-TT-SSTT-------SBSHHHHB---SEETTEEEE-SGGGGT----SS
T ss_pred ccCCchhHHHHHHHHHHHHHHhCCeEEEEcCCceecCCcc-------cccCCcccchhhhhcCceeEecchhhhhcCCCC
Confidence 6999999999999999999999999999965 33321111 13444444433322457777 22 12
Q ss_pred hhhchhhhhccccCccCceeeeEEee--ee------eeeccc--ccceEEeccCCCCCCCceEEEecccccccccccchh
Q 044201 335 FLRDWKKWDRGHKRKVPVKKVVTHKV--TP------VQLKKD--KSTIIWRQFDSPEPENYWYRVCEGQAAKYIQRPWHA 404 (558)
Q Consensus 335 F~~dw~~W~~~~~~kL~~r~v~~~~V--tp------~~l~~~--k~~li~rkf~~~ep~nyWy~vCeg~~~s~i~~P~~~ 404 (558)
|.. ..|.+-...-+ .| .|..| .+ -+++++ .+|+|--+-.-. -|+-++|+-| |..
T Consensus 82 ~fp--~~w~~p~~~~~-~~--pd~qi~re~d~l~~lf~~~~d~~a~~vv~d~c~~~--------~c~~~aeR~i---f~s 145 (321)
T PF05830_consen 82 FFP--AWWNKPSIDCV-YR--PDEQIFRERDELRQLFQSQEDHEANTVVCDACLMW--------RCDEEAEREI---FSS 145 (321)
T ss_dssp EES--GGGGS-GGGGS------HHHHHHHHHHHHHHHHSSS--S-SEEEE-S--TT--------SS-HHHHHHH---HHH
T ss_pred cCh--hHHhCCCccee-cC--ChHHHhhhhHHHHHHhhcccccccchhhhHhhcCC--------cchhHHHHHH---HHh
Confidence 222 23554211111 01 01000 00 112222 245554443333 4777777655 445
Q ss_pred hhhhHHHHHHHHHHhcccCCCCc--EEEeecCccccccccCCCCCCCCCHHHHHH----Hhh--cccCCC--cEEEEecC
Q 044201 405 LWKSKRLMNIVTEISGQMDWDFD--AVHVVRGEKAQNKELWPHLDVDTSPDALLT----KLQ--GMIHPW--RNLYIATN 474 (558)
Q Consensus 405 l~kskrLm~iv~~I~~rm~~DfD--avHVrRGDk~~nk~l~P~LD~DtspE~i~~----~i~--~~i~~G--R~LYIATn 474 (558)
|-..+....-+++|..+.-.++. .||||+|.-. ..+-|-..=+.++--++ .|. +...++ -.||+|||
T Consensus 146 lkpR~eIqarID~iy~ehf~g~~~IGVHVRhGnge---D~~~h~~~~~D~e~~L~~V~~ai~~ak~~~~~k~~~IFLATD 222 (321)
T PF05830_consen 146 LKPRPEIQARIDAIYREHFAGYSVIGVHVRHGNGE---DIMDHAPYWADEERALRQVCTAIDKAKALAPPKPVRIFLATD 222 (321)
T ss_dssp S-B-HHHHHHHHHHHHHHTTTSEEEEEEE------------------HHHHHHHHHHHHHHHHHHTS--SS-EEEEEEES
T ss_pred CCCCHHHHHHHHHHHHHHcCCCceEEEEEeccCCc---chhccCccccCchHHHHHHHHHHHHHHhccCCCCeeEEEecC
Confidence 66677778888887766544664 5899999542 11111111122332232 221 223444 45999999
Q ss_pred CCCccchhhhhcceE--EeeccchHHHhhcCCcccccccccCCCcccccCCchhhhhhHHhHhccceeE
Q 044201 475 EPFYNYFDKLRSQYK--VHLLDDYKELWSNTSEWYNETTLLNDGRPVEFDGYMRVAVDTEVFYRAKTRV 541 (558)
Q Consensus 475 E~~~~fFdpLk~kY~--vh~LddFk~Lw~~~SeWy~Et~~Ln~G~PV~fdgYmr~mVDteVf~rGK~~V 541 (558)
+.. .-+.||++|- ++--++|.. .-...+++-...++ |=...+||-..++|-.+-|
T Consensus 223 Sae--Vid~fr~~FPdiiti~k~F~~--~~~g~Lhs~~~g~~--------gg~~ALIDM~LLSrCD~LI 279 (321)
T PF05830_consen 223 SAE--VIDQFRKKFPDIITIPKQFPA--SQAGPLHSAAVGIE--------GGESALIDMYLLSRCDYLI 279 (321)
T ss_dssp -HH--HHHHHHHHSTTEE------------------HHHHHH--------HHHHHHHHHHHHTTSSEEE
T ss_pred cHH--HHHHHHHHCCCeEEcccccCC--CCCCcCcccccccc--------hHHHHHHHHHHHHhCCeEE
Confidence 875 4677777775 233344431 10112222111122 2334788888888888777
No 5
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=35.68 E-value=25 Score=31.01 Aligned_cols=30 Identities=13% Similarity=0.328 Sum_probs=23.9
Q ss_pred EeecCccccccccCCCCCCCCCHHHHHHHhhccc
Q 044201 430 HVVRGEKAQNKELWPHLDVDTSPDALLTKLQGMI 463 (558)
Q Consensus 430 HVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~i 463 (558)
|-...|.+ -||.-++|-|||.|++.|++|=
T Consensus 46 HP~gSDLI----fYP~~~~edsPegIv~~vKeWR 75 (85)
T PF01320_consen 46 HPDGSDLI----FYPEDGREDSPEGIVKEVKEWR 75 (85)
T ss_dssp -TTTTHHH----HS-STTSTSSHHHHHHHHHHHH
T ss_pred CCCCCcee----eeCCCCCCCCHHHHHHHHHHHH
Confidence 66667776 5899999999999999999884
No 6
>PF06900 DUF1270: Protein of unknown function (DUF1270); InterPro: IPR009682 This entry is represented by Bacteriophage 92, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Staphylococcus aureus and phage proteins of 53 residues in length. The function of this family is unknown.
Probab=31.67 E-value=14 Score=30.44 Aligned_cols=20 Identities=30% Similarity=0.698 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhheeeeccC
Q 044201 24 FSVFVFSVLIFTVIAITYQP 43 (558)
Q Consensus 24 fs~fV~~vl~fTv~A~tyqP 43 (558)
+--|++|+|.||++|+.-+|
T Consensus 5 ykSylIA~l~ftvlsi~L~~ 24 (53)
T PF06900_consen 5 YKSYLIANLCFTVLSIALMP 24 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34478888888888887663
No 7
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=31.20 E-value=57 Score=35.75 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhheeeeccCCCCCCcchhhhhhhhcccC----CceeecCCcceeccc
Q 044201 24 FSVFVFSVLIFTVIAITYQPPDPWLESAPALTKFFTKTE----NATFKDDSSILKTGE 77 (558)
Q Consensus 24 fs~fV~~vl~fTv~A~tyqP~DP~l~~s~~~t~~~t~~~----NaTf~~d~svl~TGe 77 (558)
+.++++.+|+|+++..+=+| .|.......+..+|.... +++..+|++|+.+|-
T Consensus 115 ~~~li~l~ll~~~~~ls~~~-~~~~~~~~~l~~~L~~p~l~~V~~~W~~dg~l~LsGy 171 (395)
T PRK15367 115 GVFLIFIGGMGVLLSISGQP-ETVNDLPLRVKFLLDKSNIHYVRAQWKEDGSLQLSGY 171 (395)
T ss_pred HHHHHHHHHHHHHeeccCCC-CCCCChHHHHHHHhhcccccceEEEECCCCcEEEEEE
Confidence 46778888888888888888 444555667777776443 677888999999984
No 8
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=25.44 E-value=81 Score=31.12 Aligned_cols=54 Identities=11% Similarity=0.203 Sum_probs=43.2
Q ss_pred HHHHHHhcccCCCCcEEEeecCccccccccCCCCCCCCCHHHHHHHhhcccCCCcEEEEecCCCCccchhhh
Q 044201 413 NIVTEISGQMDWDFDAVHVVRGEKAQNKELWPHLDVDTSPDALLTKLQGMIHPWRNLYIATNEPFYNYFDKL 484 (558)
Q Consensus 413 ~iv~~I~~rm~~DfDavHVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~i~~GR~LYIATnE~~~~fFdpL 484 (558)
++.+.+..+||+.+. +... .+++++++.|++.|..|+-|.|.+|.-.-.|+...
T Consensus 53 ~~~~~~~~~lG~~~~---~~~~---------------~~~~~~~~~l~~~l~~g~pv~~~~D~~~lpy~~~~ 106 (317)
T PF14399_consen 53 DFEENLLERLGIKYE---WREF---------------SSPDEAWEELKEALDAGRPVIVWVDMYYLPYRPNY 106 (317)
T ss_pred HHHHHHHHHCCceEE---EEec---------------CCHHHHHHHHHHHHhCCCceEEEeccccCCCCccc
Confidence 788888889997554 2211 46899999999999999999999998777776653
No 9
>PF10917 DUF2708: Protein of unknown function (DUF2708); InterPro: IPR024415 This entry represents fungus-induced proteins which may have role in hypoxia response[].
Probab=25.02 E-value=28 Score=27.67 Aligned_cols=15 Identities=40% Similarity=0.915 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhhee
Q 044201 24 FSVFVFSVLIFTVIA 38 (558)
Q Consensus 24 fs~fV~~vl~fTv~A 38 (558)
+|+|||++|+++-..
T Consensus 4 YsvfvFaiLaissvs 18 (43)
T PF10917_consen 4 YSVFVFAILAISSVS 18 (43)
T ss_pred eeehHHHHhhhhccc
Confidence 689999999887544
No 10
>PF14642 FAM47: FAM47 family
Probab=24.29 E-value=51 Score=34.37 Aligned_cols=29 Identities=45% Similarity=0.776 Sum_probs=23.5
Q ss_pred ccCCCCCCCCCHHHHHHHhhcccCCCcEEE
Q 044201 441 ELWPHLDVDTSPDALLTKLQGMIHPWRNLY 470 (558)
Q Consensus 441 ~l~P~LD~DtspE~i~~~i~~~i~~GR~LY 470 (558)
-+||||..|+.|| |+.++-+.+++.|.|=
T Consensus 132 AlyP~LeE~mPpd-Lll~VLevLDPerkLe 160 (258)
T PF14642_consen 132 ALYPHLEEDMPPD-LLLKVLEVLDPERKLE 160 (258)
T ss_pred ccCCCccccCCHH-HHHHHHhccCcccchh
Confidence 6999999999997 6666777778888763
No 11
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=24.12 E-value=89 Score=29.70 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=23.8
Q ss_pred hhhcccCCceeecCCcceeccccccCCC
Q 044201 56 KFFTKTENATFKDDSSILKTGEDLQAMP 83 (558)
Q Consensus 56 ~~~t~~~NaTf~~d~svl~TGeD~~~~~ 83 (558)
.++...+..+|..++.++..|+|++.+.
T Consensus 63 ~~l~~~~rp~~~~~g~Lv~~G~DL~~~G 90 (170)
T PF05620_consen 63 YFLEKMARPKYDETGELVDAGEDLNQPG 90 (170)
T ss_pred HHHHHhCCCCcCCCCCeecCcccccCCc
Confidence 3556788999999999999999998665
No 12
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=23.31 E-value=69 Score=29.95 Aligned_cols=49 Identities=20% Similarity=0.167 Sum_probs=41.3
Q ss_pred CCHHHHHHHhhcccCCCcEEEEecCCCCccchhhhhcc-eEEeeccchHH
Q 044201 450 TSPDALLTKLQGMIHPWRNLYIATNEPFYNYFDKLRSQ-YKVHLLDDYKE 498 (558)
Q Consensus 450 tspE~i~~~i~~~i~~GR~LYIATnE~~~~fFdpLk~k-Y~vh~LddFk~ 498 (558)
-+.|.|++.++..+.++|.||+.++.....+-+.|+++ ++|..+.=|+.
T Consensus 102 ~~s~~L~~~l~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~ 151 (231)
T PF02602_consen 102 GSSEGLAELLKEQLRGKRVLILRGEGGRPDLPEKLREAGIEVTEVIVYET 151 (231)
T ss_dssp SSHHHHHGGHHHCCTTEEEEEEESSSSCHHHHHHHHHTTEEEEEEECEEE
T ss_pred CCHHHHHHHHHhhCCCCeEEEEcCCCccHHHHHHHHHCCCeEEEEEEeec
Confidence 46899999999888889999999999999999999544 56777766665
No 13
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=23.30 E-value=63 Score=26.50 Aligned_cols=34 Identities=12% Similarity=0.304 Sum_probs=26.6
Q ss_pred cccccCChHHHHHHHHHHhhhccceeeeeecCCc
Q 044201 121 RVVNCSDPRVLIAVERFNLRLFKSIVFLEYQKPV 154 (558)
Q Consensus 121 ~p~~CsDp~v~~~~~r~~~~~F~~i~f~~~g~PV 154 (558)
.-+||.+.+.-.+..+++++.+|.+.||.-|.++
T Consensus 54 ~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~ 87 (109)
T cd03002 54 AAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKKA 87 (109)
T ss_pred EEEecCccccHHHHHHcCCCcCCEEEEEeCCCcc
Confidence 4467776455567789999999999999988743
No 14
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=22.84 E-value=1.9e+02 Score=25.05 Aligned_cols=62 Identities=23% Similarity=0.171 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHHhcccCCCCcEEEeecCccccccccCCCCCCCCCHHHHHHHhhccc---CCCcEEEEecCCCCccchh
Q 044201 406 WKSKRLMNIVTEISGQMDWDFDAVHVVRGEKAQNKELWPHLDVDTSPDALLTKLQGMI---HPWRNLYIATNEPFYNYFD 482 (558)
Q Consensus 406 ~kskrLm~iv~~I~~rm~~DfDavHVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~i---~~GR~LYIATnE~~~~fFd 482 (558)
.-|+-+.+.++.|.+.. .+.+|.. .+..|.+++++.+++++.| +++..+.|=||=..-+-|.
T Consensus 9 ~~A~g~~~~~~~i~G~~---~~~i~~~------------~~~~~~~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp~n 73 (116)
T PF03610_consen 9 SLAEGLLESAEMILGED---QDNIEAV------------DLYPDESIEDFEEKLEEAIEELDEGDGVLILTDLGGGSPFN 73 (116)
T ss_dssp THHHHHHHHHHHHHTST---CSSEEEE------------EETTTSCHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHHHH
T ss_pred HHHHHHHHHHHHHcCCC---cccEEEE------------ECcCCCCHHHHHHHHHHHHHhccCCCcEEEEeeCCCCccch
Confidence 34778888999988752 3455555 1234578888888888887 7789999998866554443
No 15
>PF06245 DUF1015: Protein of unknown function (DUF1015); InterPro: IPR008323 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.97 E-value=77 Score=34.07 Aligned_cols=54 Identities=22% Similarity=0.363 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhcccCCCCcE-----EEeecCccccccccCCCCCCCCCHHHHHHHhhcccCCCcEEEEecCCC
Q 044201 408 SKRLMNIVTEISGQMDWDFDA-----VHVVRGEKAQNKELWPHLDVDTSPDALLTKLQGMIHPWRNLYIATNEP 476 (558)
Q Consensus 408 skrLm~iv~~I~~rm~~DfDa-----vHVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~i~~GR~LYIATnE~ 476 (558)
...|..++++++......||. +|.+ +|. .+.++.+++|++.+...+.+||| |+.
T Consensus 152 ~~~i~~~i~~~~~~~~p~~~~~~~~G~~H~---------lW~-----v~d~~~i~~i~~~~~~~~~lyIA-DGH 210 (416)
T PF06245_consen 152 DNEIDELIDEAKEKGEPLYDFTDMDGVRHR---------LWR-----VTDPAVIAKIQEAFEADKPLYIA-DGH 210 (416)
T ss_pred chHHHHHHHHHHhcCCCeEEEEcCCCCEEE---------EEE-----eCCHHHHHHHHHHHhhcCceEEe-cCc
Confidence 677888888888445545543 3433 776 55688999999999889999999 664
No 16
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=21.54 E-value=47 Score=25.50 Aligned_cols=18 Identities=39% Similarity=0.530 Sum_probs=15.5
Q ss_pred HHHhhhhHHHHHHHHHHh
Q 044201 17 KLISNLCFSVFVFSVLIF 34 (558)
Q Consensus 17 ~~i~n~cfs~fV~~vl~f 34 (558)
++|||+.|..+|..-|++
T Consensus 1 ~~I~n~GFPi~va~yLL~ 18 (38)
T PF12841_consen 1 QLISNVGFPIAVAIYLLV 18 (38)
T ss_pred CchhhcCcHHHHHHHHHH
Confidence 468999999999988875
No 17
>PRK15447 putative protease; Provisional
Probab=20.63 E-value=1.6e+02 Score=30.20 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=53.8
Q ss_pred cchhhhhhHHHHHHHHHHhcccCCCCcEEEeecCccccccccCCCCCCCCCHHHHHHHhhcccCCCcEEEEecCCCC--c
Q 044201 401 PWHALWKSKRLMNIVTEISGQMDWDFDAVHVVRGEKAQNKELWPHLDVDTSPDALLTKLQGMIHPWRNLYIATNEPF--Y 478 (558)
Q Consensus 401 P~~~l~kskrLm~iv~~I~~rm~~DfDavHVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~i~~GR~LYIATnE~~--~ 478 (558)
|-.+-|++.++.+..-+|+.. +.|+|.+. + ...+.+. ..+.|+|.+.++..=..|..||+||+-.. .
T Consensus 7 ~~~~~~p~~~~~~~~~~~~~~---gaDaVY~g-~-~~~~~R~------~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~ 75 (301)
T PRK15447 7 PVLYYWPKETVRDFYQRAADS---PVDIVYLG-E-TVCSKRR------ELKVGDWLELAERLAAAGKEVVLSTLALVEAP 75 (301)
T ss_pred ccccCCCCCCHHHHHHHHHcC---CCCEEEEC-C-ccCCCcc------CCCHHHHHHHHHHHHHcCCEEEEEecccccCH
Confidence 556779999999998888652 59999998 3 2323322 26789999888887789999999998852 3
Q ss_pred cchhhhh
Q 044201 479 NYFDKLR 485 (558)
Q Consensus 479 ~fFdpLk 485 (558)
.-++-++
T Consensus 76 ~e~~~l~ 82 (301)
T PRK15447 76 SELKELR 82 (301)
T ss_pred HHHHHHH
Confidence 3444444
No 18
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=20.34 E-value=66 Score=27.92 Aligned_cols=33 Identities=12% Similarity=0.323 Sum_probs=27.2
Q ss_pred cccccCChHHHHHHHHHHhhhccceeeeeecCC
Q 044201 121 RVVNCSDPRVLIAVERFNLRLFKSIVFLEYQKP 153 (558)
Q Consensus 121 ~p~~CsDp~v~~~~~r~~~~~F~~i~f~~~g~P 153 (558)
+-+||+......+..++.++.+|.+.||+-|.+
T Consensus 58 ~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~~~ 90 (114)
T cd02992 58 AAVDCADEENVALCRDFGVTGYPTLRYFPPFSK 90 (114)
T ss_pred EEEeccchhhHHHHHhCCCCCCCEEEEECCCCc
Confidence 557887655667788999999999999999884
No 19
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.33 E-value=1.5e+02 Score=33.43 Aligned_cols=142 Identities=21% Similarity=0.280 Sum_probs=77.0
Q ss_pred EeccCCCCCCCceEEEecccccccccccchhhhhhHHHHHHHHHHhcccCCCC--cEEEeecCccccccccCCCCC-CCC
Q 044201 374 WRQFDSPEPENYWYRVCEGQAAKYIQRPWHALWKSKRLMNIVTEISGQMDWDF--DAVHVVRGEKAQNKELWPHLD-VDT 450 (558)
Q Consensus 374 ~rkf~~~ep~nyWy~vCeg~~~s~i~~P~~~l~kskrLm~iv~~I~~rm~~Df--DavHVrRGDk~~nk~l~P~LD-~Dt 450 (558)
.|--|+| -.|+. |+--+++|||...+. +-.++-...+|||= =.|||||-||.-.---+-.|. -=+
T Consensus 322 ~rlHgdP---~vwwV---gqFikYL~Rpqp~t~------~~l~~a~k~lg~~~PivGvhvRRTDKVGTEAAfH~~eEYM~ 389 (580)
T KOG3705|consen 322 TRLHGDP---PVWWV---GQFIKYLMRPQPATQ------EKLDKALKSLGLDKPIVGVHVRRTDKVGTEAAFHALEEYME 389 (580)
T ss_pred HHhcCCC---ceeeH---HHHHHHHhCCChhhH------HHHHHHHHhCCCCCceeeEEEEecccccchhhhhhHHHHHH
Confidence 3555777 67764 555689999987654 22222233377664 468999999985542111000 001
Q ss_pred CHHHHHHHhhcccC-CCcEEEEecCCCCccchhhhhcceE-EeeccchHHHhh-cCCcccccccccCCCcccccCCchhh
Q 044201 451 SPDALLTKLQGMIH-PWRNLYIATNEPFYNYFDKLRSQYK-VHLLDDYKELWS-NTSEWYNETTLLNDGRPVEFDGYMRV 527 (558)
Q Consensus 451 spE~i~~~i~~~i~-~GR~LYIATnE~~~~fFdpLk~kY~-vh~LddFk~Lw~-~~SeWy~Et~~Ln~G~PV~fdgYmr~ 527 (558)
-.|...+.+++.-+ -.|.+|+|||.+. ...--|.+|- --+..|=+=-|. .-+.=|.|+ .|+ .|+.|=|.+-
T Consensus 390 ~vE~~f~~le~rg~~~~rRiflAsDDp~--vv~EAk~kYPnYe~igd~eia~~A~l~nRYTd~-sL~---GvIlDIh~LS 463 (580)
T KOG3705|consen 390 WVEIWFKVLEKRGKPLERRIFLASDDPT--VVPEAKNKYPNYEVIGDTEIAKTAQLNNRYTDA-SLM---GVILDIHILS 463 (580)
T ss_pred HHHHHHHHHHHhCCchhheEEEecCCch--hchHhhccCCCcEEeccHHHHHHhhccccchhh-hhh---heeeeeeeec
Confidence 23444444444433 4688999999765 4556666665 344444433332 112234442 222 4566666666
Q ss_pred hhhHHh
Q 044201 528 AVDTEV 533 (558)
Q Consensus 528 mVDteV 533 (558)
++|-+|
T Consensus 464 ~~d~LV 469 (580)
T KOG3705|consen 464 KVDYLV 469 (580)
T ss_pred ccceEE
Confidence 666543
No 20
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.00 E-value=1.7e+02 Score=29.85 Aligned_cols=48 Identities=15% Similarity=0.351 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHhcccCCCCcEEEee------cCccccccccCCCCCCCCCHHHHHHHhhc
Q 044201 407 KSKRLMNIVTEISGQMDWDFDAVHVV------RGEKAQNKELWPHLDVDTSPDALLTKLQG 461 (558)
Q Consensus 407 kskrLm~iv~~I~~rm~~DfDavHVr------RGDk~~nk~l~P~LD~DtspE~i~~~i~~ 461 (558)
....|+++|+++.+ .+--+|.||+- .||+.-+++.||+ |.++++.|++
T Consensus 28 s~~~v~~~~~~~~~-~~iP~d~i~iD~~w~~~~g~f~~d~~~FPd------p~~mi~~l~~ 81 (303)
T cd06592 28 NQETVLNYAQEIID-NGFPNGQIEIDDNWETCYGDFDFDPTKFPD------PKGMIDQLHD 81 (303)
T ss_pred CHHHHHHHHHHHHH-cCCCCCeEEeCCCccccCCccccChhhCCC------HHHHHHHHHH
Confidence 45678999999888 56678999985 6888888899994 7889888886
Done!