Query 044201
Match_columns 558
No_of_seqs 67 out of 69
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 21:43:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044201.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044201hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.6 5.2E-16 1.8E-20 155.3 8.5 274 252-558 20-398 (408)
2 3zy2_A Putative GDP-fucose pro 98.4 1.4E-06 4.8E-11 89.4 10.4 240 266-545 14-333 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 97.8 1.2E-05 4.2E-10 85.0 4.2 242 250-546 141-407 (526)
4 2hhc_A NODZ, nodulation fucosy 97.2 0.00029 1E-08 68.1 5.3 41 252-296 2-42 (330)
5 3u43_A Colicin-E2 immunity pro 31.6 21 0.00073 30.7 2.0 30 430-463 46-75 (94)
6 1fr2_A Colicin E9 immunity pro 29.6 25 0.00087 29.7 2.1 30 430-463 46-75 (86)
7 1gxg_A Colicin E8 immunity pro 29.5 25 0.00086 29.7 2.1 30 430-463 45-74 (85)
8 1unk_A Colicin E7; immunity pr 26.2 32 0.0011 29.4 2.2 41 410-463 36-76 (87)
9 3gdw_A Sigma-54 interaction do 22.7 1E+02 0.0036 27.1 4.9 53 407-476 16-73 (139)
10 2w45_A Nuclease, alkaline exon 21.3 42 0.0014 35.9 2.4 47 127-174 240-300 (470)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.62 E-value=5.2e-16 Score=155.35 Aligned_cols=274 Identities=15% Similarity=0.174 Sum_probs=158.4
Q ss_pred ccceeEEEeCC-CCcCCCcchhHHHHHhhccccccccce----eeeecccccccccCCCCCCCccccceeecchhhhccc
Q 044201 252 RKGKYLYYSRG-GDYCKGMNQYMWSFLCGLGEAIYLNRT----FVMDLSVCLAATYNPSNKDEEGKDFRYYFDFEHLKEV 326 (558)
Q Consensus 252 ~~gKYLyy~~g-Gd~Ckgm~H~~~SllCAL~EA~yLNRT----fVMdl~mCLs~~~n~~g~~eegkd~r~yfD~ehl~~t 326 (558)
++-|||.|--- | .|-|=|-=.|+=++.=|+.|||| ||||--.=+ ..|......+..-.|.-+||+++|++-
T Consensus 20 ~~~rYl~y~~~~g---~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~-~h~~~~~~~~~~ipf~~fFDv~~L~~~ 95 (408)
T 4ap5_A 20 SRRRYLLYDVNPP---EGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRL-YHWQSPDIHQVRIPWSEFFDLPSLNKN 95 (408)
T ss_dssp CCCEEEEECCCTT---CCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCS-CGGGSTTSCCCSBCGGGTBCHHHHHTT
T ss_pred cccceEEecCCCC---CcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCccc-ccccCCcccceeccHHHhcCHHHHHhh
Confidence 56899998542 2 35666656666666788999999 999933212 222222222223458889999999999
Q ss_pred cceeecchhhhchhh--hhcc--cc---CccCceeeeEEeeeeeeecccccceEEecc--CCCCCCCce--------EEE
Q 044201 327 ASVVEEGEFLRDWKK--WDRG--HK---RKVPVKKVVTHKVTPVQLKKDKSTIIWRQF--DSPEPENYW--------YRV 389 (558)
Q Consensus 327 v~VIe~~qF~~dw~~--W~~~--~~---~kL~~r~v~~~~Vtp~~l~~~k~~li~rkf--~~~ep~nyW--------y~v 389 (558)
+|||+-.+|+++... |..+ .+ .+.......+ ..+.+...+......- +.+. +-+| -..
T Consensus 96 vpVI~meeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~----k~~~~~c~~~~~~~~~~~~~~~-gpfw~~~~v~~~~~~ 170 (408)
T 4ap5_A 96 IPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEE----KVDERPCIDQLLYSQDKHEYYR-GWFWGYEETRGLNVS 170 (408)
T ss_dssp SCEEEHHHHHHHSSSSEEEEEEEEECCTTCCCTTCCCC----CEEEECCSSCCSCEECTTSCEE-CCGGGCTTCEEEEEE
T ss_pred CCeeEHHHHHHHhCCCCCcceeeccccHhhcccccccc----hhhhhhhhhccccccccccCcc-CCcccccccccCCce
Confidence 999999999987642 3322 00 0000000000 0111110111110000 0000 0011 112
Q ss_pred eccccc--cccc-------------------ccch------------hhhhhHHHHHHHHHHhcc---------------
Q 044201 390 CEGQAA--KYIQ-------------------RPWH------------ALWKSKRLMNIVTEISGQ--------------- 421 (558)
Q Consensus 390 Ceg~~~--s~i~-------------------~P~~------------~l~kskrLm~iv~~I~~r--------------- 421 (558)
|-.--. +.+. .|.+ .|..++.|++++++....
T Consensus 171 c~~~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~r~l~~s~~l~~~a~~fi~~~L~~~~~~~h~r~~~ 250 (408)
T 4ap5_A 171 CLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLNSTDDADRIPFQE 250 (408)
T ss_dssp EEEECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHHHTCCBCHHHHHHHHHHHHHHHCCCTTTTTCCCCS
T ss_pred eEEEeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHHHHhhhhHHHHHHHHHHHHHHhCcccceeecccch
Confidence 211000 0000 0111 133578888888775432
Q ss_pred ------------cCCCCcEEEeecCcccccccc-CCCCCCCCCHHHHHHHhhcccC--CCcEEEEecCCCCccchhhhhc
Q 044201 422 ------------MDWDFDAVHVVRGEKAQNKEL-WPHLDVDTSPDALLTKLQGMIH--PWRNLYIATNEPFYNYFDKLRS 486 (558)
Q Consensus 422 ------------m~~DfDavHVrRGDk~~nk~l-~P~LD~DtspE~i~~~i~~~i~--~GR~LYIATnE~~~~fFdpLk~ 486 (558)
+++.|.++|+||||+++.+++ .| |.+.+++.|++.+. ..+.||||||+.+..+++..+.
T Consensus 251 dw~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~~~~~p------s~~~~~~~i~~~~~~~~~~~VyiATD~~~~~~~~l~~~ 324 (408)
T 4ap5_A 251 DWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVP------SLEGAVRKIRSLMKTHRLDKVFVATDAVRKEYEELKKL 324 (408)
T ss_dssp SGGGCCCCTTCBCCEEEEEEEECCTTTTTTTCSSSC------CHHHHHHHHHHHHHHHTCSCEEEEECCCHHHHHHHHHH
T ss_pred hHhhhhcccccccCCCccccccccccchhhhhccCC------CHHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHh
Confidence 356899999999999876532 23 45677777776655 6678999999988777665555
Q ss_pred ceEEeeccchHHHhhcCCcccccccccCCCcccccCCchhhhhhHHhHhccceeEEeecc--------------ccc---
Q 044201 487 QYKVHLLDDYKELWSNTSEWYNETTLLNDGRPVEFDGYMRVAVDTEVFYRAKTRVETFYN--------------LTK--- 549 (558)
Q Consensus 487 kY~vh~LddFk~Lw~~~SeWy~Et~~Ln~G~PV~fdgYmr~mVDteVf~rGK~~VeTf~~--------------lt~--- 549 (558)
...+.+++++.+... + ..||| ..|||++|..||+.||+|..+ +++
T Consensus 325 ~~~~~~~~~~~~~~~----------------~-~~d~~-~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~~~t 386 (408)
T 4ap5_A 325 LPEMVRFEPTWEELE----------------L-YKDGG-VAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDPKTT 386 (408)
T ss_dssp CTTEECCCCCHHHHH----------------H-HHHHH-HHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCGGGT
T ss_pred CCCcEEecCcchhhh----------------c-cCcch-hhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCCCcc
Confidence 555666666665543 1 23445 489999999999999998754 232
Q ss_pred ---ccccccCCC
Q 044201 550 ---DCKDGVNTC 558 (558)
Q Consensus 550 ---DCKdGintC 558 (558)
=|+|+-..|
T Consensus 387 ~~~~c~~~~~~~ 398 (408)
T 4ap5_A 387 YNRFCGDQEKAC 398 (408)
T ss_dssp SCBCCCTTCSSC
T ss_pred ccccCCCCccCC
Confidence 388888777
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=98.35 E-value=1.4e-06 Score=89.43 Aligned_cols=240 Identities=18% Similarity=0.211 Sum_probs=136.2
Q ss_pred CCCcc---hhHHHHHhhccccccccceeeeecccccccccCCCCCCCccccceeecchhhhccccceeecchhhhch--h
Q 044201 266 CKGMN---QYMWSFLCGLGEAIYLNRTFVMDLSVCLAATYNPSNKDEEGKDFRYYFDFEHLKEVASVVEEGEFLRDW--K 340 (558)
Q Consensus 266 Ckgm~---H~~~SllCAL~EA~yLNRTfVMdl~mCLs~~~n~~g~~eegkd~r~yfD~ehl~~tv~VIe~~qF~~dw--~ 340 (558)
|--|| -|.--||=+|+=|+-||||||+|-=+ .|.. ++ .----|.-||++|.|++---||.-.+|.++- .
T Consensus 14 CPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi----~y~~-~~-~~~vpf~~yF~v~~l~~yhrvi~me~Fm~~lap~ 87 (362)
T 3zy2_A 14 CPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFI----EFKH-PE-TKMIPFEFLFQVGTVAKYTRVVTMQEFTKKIMPT 87 (362)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEE----ECSS-SS-CEEECHHHHBCHHHHTTTSCEECHHHHHHHTHHH
T ss_pred CCCcCccccHHHHHHHHHHHHHhhCceEecCccc----cccC-Cc-ccccchhheeecchhhhhceeeeHHHHHHHhccc
Confidence 66665 56778888899999999999998754 3432 21 1112378899999999999999888886542 1
Q ss_pred hhhccccCccCceeeeEEeeeeee-----------ecccccce--EEec----------cCCCCCCCce------EEEec
Q 044201 341 KWDRGHKRKVPVKKVVTHKVTPVQ-----------LKKDKSTI--IWRQ----------FDSPEPENYW------YRVCE 391 (558)
Q Consensus 341 ~W~~~~~~kL~~r~v~~~~Vtp~~-----------l~~~k~~l--i~rk----------f~~~ep~nyW------y~vCe 391 (558)
-|-. +.|+.-=+.. +.+ .|+ .+.. .|.. |+.--.++.+ -..++
T Consensus 88 ~WP~------~~R~~~C~~~-~~~~~~~~~~~~C~~K~-GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~~ 159 (362)
T 3zy2_A 88 VWPP------EKRKAFCWTP-RQAIYDKSAEPGCHSKE-GNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWLE 159 (362)
T ss_dssp HSCG------GGCEEEESSC-BC-------CCBCCTTS-STTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHHH
T ss_pred cCCc------ccceEeeccc-cccccCCCCCCCCCCCC-CCCCCcchhccccccccceeccCccccccccchhHHHHHHH
Confidence 1211 1121110000 000 000 0000 0111 1110000111 00000
Q ss_pred ccc--c-ccc-----------ccc----chhhhhhHHHHHHHHH-HhcccCCCCcEEEeecC-cccccccc-----CCCC
Q 044201 392 GQA--A-KYI-----------QRP----WHALWKSKRLMNIVTE-ISGQMDWDFDAVHVVRG-EKAQNKEL-----WPHL 446 (558)
Q Consensus 392 g~~--~-s~i-----------~~P----~~~l~kskrLm~iv~~-I~~rm~~DfDavHVrRG-Dk~~nk~l-----~P~L 446 (558)
-=. + .|+ +.= ...|.+|+.+++.+++ |..-|+..|=+||.||| |+..--+. -|||
T Consensus 160 ~~p~~~~pVlAf~gaPa~FPv~~e~r~LqkYm~WS~~i~~~a~~fI~~~L~rpyVgIHLR~G~DW~~aC~hlk~~~~~~l 239 (362)
T 3zy2_A 160 KFPSEEYPVLAFSSAPAPFPSKGKVWSIQKYLRWSSRITEQAKKFISANLAKPFVAVHLRNDADWVRVCEHIDTTTNRPL 239 (362)
T ss_dssp HSCTTTCSEEEESSCSSCSSCCGGGGGGGGGCCBCHHHHHHHHHHHHHHCCSSEEEEEECCCHHHHHHHHTCCTTTCCCC
T ss_pred hCCcccCceEeecCCCCCCCcChhhHhHHHhccccHHHHHHHHHHHHHhcCCCeEEEEEecCCcHHHHHhhhccccCccc
Confidence 000 0 111 111 2244589999999999 66669999999999999 76521110 2444
Q ss_pred CC-----------C--------CCHHHHHHHhhcccC--CCcEEEEecCCCCccchhhhhcceEEeeccchHHHhhcCCc
Q 044201 447 DV-----------D--------TSPDALLTKLQGMIH--PWRNLYIATNEPFYNYFDKLRSQYKVHLLDDYKELWSNTSE 505 (558)
Q Consensus 447 D~-----------D--------tspE~i~~~i~~~i~--~GR~LYIATnE~~~~fFdpLk~kY~vh~LddFk~Lw~~~Se 505 (558)
=. + -|.+.|+++|++++. .-+.||||||... +.+.|++.+ .. .+
T Consensus 240 faSPQC~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~~~lksVFIATDa~~--~~~ELk~~L------------~~-~~ 304 (362)
T 3zy2_A 240 FASEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIGAKSVFVASDKDH--MIDEINEAL------------KP-YE 304 (362)
T ss_dssp TTTHHHHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHHHTCSEEEEEESSCC--CHHHHHHHH------------GG-GT
T ss_pred ccCCcccCCcccCcccchhccCCCHHHHHHHHHHHHHhcCCcEEEEecCCHH--HHHHHHHHh------------hc-cC
Confidence 21 1 156889999988877 6799999999754 667766532 10 00
Q ss_pred ccccccccCCCcccccCCchhhhhhHHhHhccceeEEeec
Q 044201 506 WYNETTLLNDGRPVEFDGYMRVAVDTEVFYRAKTRVETFY 545 (558)
Q Consensus 506 Wy~Et~~Ln~G~PV~fdgYmr~mVDteVf~rGK~~VeTf~ 545 (558)
+ ++.++. | . ..+||+.|..++..||+|-.
T Consensus 305 v--~vv~~~---p-----e-~a~ID~~I~~~A~~FIGN~~ 333 (362)
T 3zy2_A 305 I--EAHRQE---P-----D-DMYTSLAIMGRADLFVGNCV 333 (362)
T ss_dssp C--CEECCS---S-----C-CHHHHHHHHHHSSEEEECTT
T ss_pred c--eEEEeC---C-----c-hhHHHHHHHHhCCEeecCcc
Confidence 0 111111 1 1 36999999999999999854
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.77 E-value=1.2e-05 Score=85.02 Aligned_cols=242 Identities=18% Similarity=0.252 Sum_probs=121.3
Q ss_pred ccccceeEEEeCCCCcCCCcchhHHHHHhhccccccccceeeeecccccccccCCCCCCCccccceeecchhhhccc-cc
Q 044201 250 NFRKGKYLYYSRGGDYCKGMNQYMWSFLCGLGEAIYLNRTFVMDLSVCLAATYNPSNKDEEGKDFRYYFDFEHLKEV-AS 328 (558)
Q Consensus 250 ~f~~gKYLyy~~gGd~Ckgm~H~~~SllCAL~EA~yLNRTfVMdl~mCLs~~~n~~g~~eegkd~r~yfD~ehl~~t-v~ 328 (558)
..+..|||.+.-+ ..-|||=++..++.+|-=|..+|||||+|.+-|. |..++ +.-||.- +++. .+
T Consensus 141 ~Cs~aK~Lv~~~~--~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~w~---Y~~g~-------w~~yF~P--~s~~C~~ 206 (526)
T 2de0_X 141 DCSKAKKLVCNIN--KGCGYGCQLHHVVYCFMIAYGTQRTLILESQNWR---YATGG-------WETVFRP--VSETCTD 206 (526)
T ss_dssp CGGGSCEEEEECC--CSSCHHHHHHHHHHHHHHHHHHTCEEEEECTTCS---SCTTC-------GGGTBCC--SCSSCCC
T ss_pred cCCCCCEEEEEec--CCCchHHHHHHHHHHHHHHHhhCCEEEEECCCCC---cCCCC-------HHHhhhC--cCccccC
Confidence 5666799998653 2347888899999999999999999999998875 43221 3555554 3322 11
Q ss_pred ee-ecchhhhchhhhhccccCccCceeeeEEeeeeeeecccccce--EEecc---------CCCCCCCceEEEecccccc
Q 044201 329 VV-EEGEFLRDWKKWDRGHKRKVPVKKVVTHKVTPVQLKKDKSTI--IWRQF---------DSPEPENYWYRVCEGQAAK 396 (558)
Q Consensus 329 VI-e~~qF~~dw~~W~~~~~~kL~~r~v~~~~Vtp~~l~~~k~~l--i~rkf---------~~~ep~nyWy~vCeg~~~s 396 (558)
-. .+. ..|... ..-....|.+..+.. .+...+.-+ -+.+. +++ ..|++-. .-+
T Consensus 207 ~~~~~~------~~w~~~--~~~~~~~vV~~~~i~-~~~~~~~~~~~~~P~~~~~~L~~l~~dp---~~w~~~q---~~~ 271 (526)
T 2de0_X 207 RSGIST------GHWSGE--VKDKNVQVVELPIVD-SLHPRPPYLPLAVPEDLADRLVRVHGDP---AVWWVSQ---FVK 271 (526)
T ss_dssp CCCSCC------CBCCCT--TGGGGCSEEEECCGG-GCSSCCSCCTTCEEGGGHHHHHHHCSCH---HHHHHHH---HHH
T ss_pred CCcccc------CCCCCc--ccCCCcceEEeeccc-cccccccccccccchhHHHHHHhccCCc---HHHHHHH---HHH
Confidence 00 011 123221 000011111111000 000000000 00100 111 3344322 223
Q ss_pred cccccchhhhhhHHHHHHHHHHhccc--CCCCcEEEeecCcccc-ccccCCCCCCCCCHHHHHHHhhcc--------cCC
Q 044201 397 YIQRPWHALWKSKRLMNIVTEISGQM--DWDFDAVHVVRGEKAQ-NKELWPHLDVDTSPDALLTKLQGM--------IHP 465 (558)
Q Consensus 397 ~i~~P~~~l~kskrLm~iv~~I~~rm--~~DfDavHVrRGDk~~-nk~l~P~LD~DtspE~i~~~i~~~--------i~~ 465 (558)
++++| .+.+.+.+++...++ +.-.=+|||||||+.. ....+| .++.++.++++ -+.
T Consensus 272 yl~rP------~~~i~~~I~~~~~~l~~~~piVGVHIRrGDk~~~E~~~~~-------~~~Y~~~v~~~~~~l~~~~~~~ 338 (526)
T 2de0_X 272 YLIRP------QPWLEKEIEEATKKLGFKHPVIGVHVRRTDKVGTEAAFHP-------IEEYMVHVEEHFQLLARRMQVD 338 (526)
T ss_dssp HHTCB------CHHHHHHHHHHHHHHTCCSSEEEEEECCC-----CCCSCS-------HHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHcCC------CHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCCccccccCC-------HHHHHHHHHHHHHHHHhhcCCC
Confidence 34444 445555566666553 5567799999999953 333333 34444444432 357
Q ss_pred CcEEEEecCCCCccchhhhhcceE-EeeccchHHHhhcCCcccccccccCCCcccccCCchhhhhhHHhHhccceeEEee
Q 044201 466 WRNLYIATNEPFYNYFDKLRSQYK-VHLLDDYKELWSNTSEWYNETTLLNDGRPVEFDGYMRVAVDTEVFYRAKTRVETF 544 (558)
Q Consensus 466 GR~LYIATnE~~~~fFdpLk~kY~-vh~LddFk~Lw~~~SeWy~Et~~Ln~G~PV~fdgYmr~mVDteVf~rGK~~VeTf 544 (558)
-+.+|||||.+ ..++.++.+|. ..+..|-+--|.. ...++.+ .++-...++|-.++++...+|.|+
T Consensus 339 ~~~ifLATDDp--~v~~e~k~~~p~~~~~~d~~~~~~a-----~~~~R~s------~~~l~~~l~DL~lLs~cd~~Vgt~ 405 (526)
T 2de0_X 339 KKRVYLATDDP--SLLKEAKTKYPNYEFISDNSISWSA-----GLHNRYT------ENSLRGVILDIHFLSQADFLVCTF 405 (526)
T ss_dssp SCEEEEEESCH--HHHHHHHHHCTTSEEECCCCSSCSS-----GGGGGTC------CTHHHHHHHHHHHHHHSSEEEECT
T ss_pred CCeEEEEcCCH--HHHHHHHHhCCCCEEecCccccccc-----Ccccccc------HHHHHHHHHHHHHHhcCCeeecCC
Confidence 89999999955 45888876553 1111111000100 0011111 111233689999999999999998
Q ss_pred cc
Q 044201 545 YN 546 (558)
Q Consensus 545 ~~ 546 (558)
.+
T Consensus 406 sS 407 (526)
T 2de0_X 406 SS 407 (526)
T ss_dssp TS
T ss_pred CC
Confidence 75
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.21 E-value=0.00029 Score=68.12 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=36.5
Q ss_pred ccceeEEEeCCCCcCCCcchhHHHHHhhccccccccceeeeeccc
Q 044201 252 RKGKYLYYSRGGDYCKGMNQYMWSFLCGLGEAIYLNRTFVMDLSV 296 (558)
Q Consensus 252 ~~gKYLyy~~gGd~Ckgm~H~~~SllCAL~EA~yLNRTfVMdl~m 296 (558)
++.||++|... .|||-||..+..|+.-|+-.||++++|...
T Consensus 2 ~~~r~iv~~~~----gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~ 42 (330)
T 2hhc_A 2 TKERFVISRRR----TGFGDCLWSLASAWSYAQRTGRTLVIDWRG 42 (330)
T ss_dssp CCCCEEEEECC----SCHHHHHHHHHHHHHHHHHHTCEEEEECBT
T ss_pred CCCCEEEEeCC----CcHHHHHHHHHHHHHHHHHhCCEEEEECCC
Confidence 46899999754 389999999999999999999999999775
No 5
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=31.58 E-value=21 Score=30.74 Aligned_cols=30 Identities=17% Similarity=0.370 Sum_probs=23.7
Q ss_pred EeecCccccccccCCCCCCCCCHHHHHHHhhccc
Q 044201 430 HVVRGEKAQNKELWPHLDVDTSPDALLTKLQGMI 463 (558)
Q Consensus 430 HVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~i 463 (558)
|-...|.+ -||.=++|.|||.|++.|++|=
T Consensus 46 HP~gSDLI----fyP~~~~e~SPEgIv~~IKeWR 75 (94)
T 3u43_A 46 HPDGSDLI----YYPRDDREDSPEGIVKEIKEWR 75 (94)
T ss_dssp CTTTTHHH----HSCCTTSCSSHHHHHHHHHHHH
T ss_pred CCCccCee----eeCCCCCCCCHHHHHHHHHHHH
Confidence 33345555 5888899999999999999984
No 6
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=29.62 E-value=25 Score=29.68 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=24.0
Q ss_pred EeecCccccccccCCCCCCCCCHHHHHHHhhccc
Q 044201 430 HVVRGEKAQNKELWPHLDVDTSPDALLTKLQGMI 463 (558)
Q Consensus 430 HVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~i 463 (558)
|-...|.+ -||+=++|.|||.|++.|++|=
T Consensus 46 HP~gSDLI----fyP~~~~e~spE~Iv~~ik~wR 75 (86)
T 1fr2_A 46 HPSGSDLI----YYPKEGDDDSPSGIVNTVKQWR 75 (86)
T ss_dssp CTTTTHHH----HSCCTTCCCSHHHHHHHHHHHH
T ss_pred CCCcCcee----ecCCCCCCCCHHHHHHHHHHHH
Confidence 44445666 5898899999999999999874
No 7
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=29.51 E-value=25 Score=29.65 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=23.9
Q ss_pred EeecCccccccccCCCCCCCCCHHHHHHHhhccc
Q 044201 430 HVVRGEKAQNKELWPHLDVDTSPDALLTKLQGMI 463 (558)
Q Consensus 430 HVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~i 463 (558)
|-...|.+ -||+=++|.|||.|++.+++|=
T Consensus 45 HP~gSDLI----fyP~~~~e~spE~Iv~~ik~wR 74 (85)
T 1gxg_A 45 HPSGSDLI----YYPEGNNDGSPEAVIKEIKEWR 74 (85)
T ss_dssp CTTTTHHH----HSCCTTCCSSHHHHHHHHHHHH
T ss_pred CCCcCcee----ecCCCCCCCCHHHHHHHHHHHH
Confidence 44445665 5898899999999999999873
No 8
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=26.17 E-value=32 Score=29.36 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcccCCCCcEEEeecCccccccccCCCCCCCCCHHHHHHHhhccc
Q 044201 410 RLMNIVTEISGQMDWDFDAVHVVRGEKAQNKELWPHLDVDTSPDALLTKLQGMI 463 (558)
Q Consensus 410 rLm~iv~~I~~rm~~DfDavHVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~i 463 (558)
.|++-..+|.. |-...|++ -||.=++|-|||.|++.|++|=
T Consensus 36 ~lv~hF~~ite---------HP~gsDLI----fYP~~~~edsPEgIv~~iKeWR 76 (87)
T 1unk_A 36 VLLEHFVKITE---------HPDGTDLI----YYPSDNRDDSPEGIVKEIKEWR 76 (87)
T ss_dssp HHHHHHHHHHC---------CTTTTHHH----HSCCSSCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC---------CCCCCCee----eeCCCCCCCCHHHHHHHHHHHH
Confidence 35555555544 55566776 5888899999999999999874
No 9
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=22.68 E-value=1e+02 Score=27.13 Aligned_cols=53 Identities=9% Similarity=0.179 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHhcccCCCCcEEEeecCccccccccCCCCCCCCCHHHHHHHhhcccCC-----CcEEEEecCCC
Q 044201 407 KSKRLMNIVTEISGQMDWDFDAVHVVRGEKAQNKELWPHLDVDTSPDALLTKLQGMIHP-----WRNLYIATNEP 476 (558)
Q Consensus 407 kskrLm~iv~~I~~rm~~DfDavHVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~i~~-----GR~LYIATnE~ 476 (558)
-|..|.+.|+.|.+. . .+.++-+. .|.+||++++++++.|.. |.-|.|-||=-
T Consensus 16 ~A~~l~~~a~~i~G~-~-~~~aid~~---------------~~~~~~~~~~~i~~~i~~~~~d~g~GVLiL~DmG 73 (139)
T 3gdw_A 16 TASSMLKTAQELLGT-S-IGTAMNMP---------------LTMEVQTMYEQLRNQVITQKESLNNGILLLTDMG 73 (139)
T ss_dssp HHHHHHHHHHHHHTC-C-CCEEEEEC---------------TTSCHHHHHHHHHHHHHTSTGGGTTCEEEEECSG
T ss_pred HHHHHHHHHHHHcCc-c-cEEEEEcc---------------CCCCHHHHHHHHHHHHHhhcCCCCCCEEEEEeCC
Confidence 377899999999987 3 67766443 347899999998887743 77899999873
No 10
>2w45_A Nuclease, alkaline exonuclease; endonuclease, gamma-herpesvirus, EBV, BGLF5, DNAse, hydrolase, epstein-BARR virus; 3.00A {Human herpesvirus 4} PDB: 2w4b_A
Probab=21.30 E-value=42 Score=35.89 Aligned_cols=47 Identities=17% Similarity=0.341 Sum_probs=36.6
Q ss_pred Ch---HHHHHHHHHHhhh---c------cceeeeeecCCcCCCCC--Ccccccccccccccc
Q 044201 127 DP---RVLIAVERFNLRL---F------KSIVFLEYQKPVNGSKA--NECDVAWRFRNKKEK 174 (558)
Q Consensus 127 Dp---~v~~~~~r~~~~~---F------~~i~f~~~g~PV~g~~~--~~CD~aWRfR~~~~~ 174 (558)
|| -+..|+.+-..+. | |.|.|+.=|+ +|+..+ -+||-+|+.+|++.+
T Consensus 240 dpl~~~y~~Ll~~p~~~~~~~Fi~si~~P~VEy~~~g~-~Ps~~e~LlT~d~~w~~~~~k~~ 300 (470)
T 2w45_A 240 DPIYPSYTALYKRPCKRSFIRFINSIARPTVEYVPDGR-LPSEGDYLLTQDEAWNLKDVRKR 300 (470)
T ss_dssp CSSHHHHHHHHHSCSHHHHHHHHTTSSSCSEEECCTTB-CCCSSCSEEECCGGGCCSCCCCB
T ss_pred ChhHHHHHHHHhCCCHHHHHHHHHhCCCCceeeeCCCC-CCChhhhhhhcChhhccCCcccc
Confidence 78 7777777655544 3 9999998887 788777 789999999997643
Done!