Query 044201
Match_columns 558
No_of_seqs 67 out of 69
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 21:43:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044201.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044201hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yzha1 c.66.1.53 (A:8-211) tR 62.5 2.7 0.0002 36.7 3.8 25 453-477 126-150 (204)
2 d2fcaa1 c.66.1.53 (A:10-213) t 32.0 14 0.001 32.0 3.2 63 453-519 124-195 (204)
3 d1pdoa_ c.54.1.1 (A:) IIA doma 22.2 48 0.0035 26.4 4.7 57 407-479 12-71 (129)
4 d1gxha_ a.28.2.1 (A:) ImmE8 (I 20.2 21 0.0015 28.5 1.9 30 430-463 45-74 (85)
5 d1a8ya1 c.47.1.3 (A:3-126) Cal 20.1 15 0.0011 28.4 1.1 33 120-155 70-103 (124)
6 d1ayia_ a.28.2.1 (A:) ImmE7 pr 18.1 27 0.002 27.9 2.1 30 430-463 47-76 (86)
7 d2b5ea4 c.47.1.2 (A:23-141) Pr 16.4 27 0.0019 26.8 1.7 34 119-154 62-95 (119)
8 d2vlqa1 a.28.2.1 (A:4-84) ImmE 16.2 39 0.0028 26.7 2.6 41 410-463 32-72 (81)
9 d1p3da2 c.59.1.1 (A:322-473) U 14.1 30 0.0022 26.6 1.4 38 451-488 115-152 (152)
10 d1nw2a_ c.47.1.1 (A:) Thioredo 12.9 34 0.0025 25.3 1.3 33 119-154 51-84 (105)
No 1
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}
Probab=62.46 E-value=2.7 Score=36.72 Aligned_cols=25 Identities=8% Similarity=0.141 Sum_probs=22.3
Q ss_pred HHHHHHhhcccCCCcEEEEecCCCC
Q 044201 453 DALLTKLQGMIHPWRNLYIATNEPF 477 (558)
Q Consensus 453 E~i~~~i~~~i~~GR~LYIATnE~~ 477 (558)
.++++.+...+.||..|||+||-.+
T Consensus 126 ~~~l~~~~~~LkpgG~l~i~TD~~~ 150 (204)
T d1yzha1 126 KTFLDTFKRILPENGEIHFKTDNRG 150 (204)
T ss_dssp HHHHHHHHHHSCTTCEEEEEESCHH
T ss_pred HHHHHHHHHhCCCCcEEEEEECCcc
Confidence 6889999999999999999998544
No 2
>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}
Probab=32.04 E-value=14 Score=32.00 Aligned_cols=63 Identities=16% Similarity=0.244 Sum_probs=37.5
Q ss_pred HHHHHHhhcccCCCcEEEEecCCCCccchhhhhcceE-----Eee--ccchHHHhhc--CCcccccccccCCCccc
Q 044201 453 DALLTKLQGMIHPWRNLYIATNEPFYNYFDKLRSQYK-----VHL--LDDYKELWSN--TSEWYNETTLLNDGRPV 519 (558)
Q Consensus 453 E~i~~~i~~~i~~GR~LYIATnE~~~~fFdpLk~kY~-----vh~--LddFk~Lw~~--~SeWy~Et~~Ln~G~PV 519 (558)
.++++.+...+.||..|+||||-.. |++-..+.+. ..+ .|.+..-+.. .+++ |.+-+..|+||
T Consensus 124 ~~~l~~~~r~LkpgG~l~i~TD~~~--y~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~T~y--E~k~~~~G~~i 195 (204)
T d2fcaa1 124 SHFLKKYEEVMGKGGSIHFKTDNRG--LFEYSLKSFSEYGLLLTYVSLDLHNSNLEGNIMTEY--EEKFSALGQPI 195 (204)
T ss_dssp HHHHHHHHHHHTTSCEEEEEESCHH--HHHHHHHHHHHHTCEEEEEESSGGGSSCTTCCCCTT--GGGSSSSSCCC
T ss_pred HHHHHHHHHhCCCCcEEEEEECChH--HHHHHHHHHHHCCCccccCChhhcccCCCCCCCCHH--HHHHHHcCCCe
Confidence 4788999999999999999998554 3443332221 111 1223322221 0111 67778888887
No 3
>d1pdoa_ c.54.1.1 (A:) IIA domain of mannose transporter, IIA-Man {Escherichia coli [TaxId: 562]}
Probab=22.19 E-value=48 Score=26.35 Aligned_cols=57 Identities=7% Similarity=0.147 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHhcccCCCCcEEEeecCccccccccCCCCCCCCCHHHHHHHhhccc---CCCcEEEEecCCCCcc
Q 044201 407 KSKRLMNIVTEISGQMDWDFDAVHVVRGEKAQNKELWPHLDVDTSPDALLTKLQGMI---HPWRNLYIATNEPFYN 479 (558)
Q Consensus 407 kskrLm~iv~~I~~rm~~DfDavHVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~i---~~GR~LYIATnE~~~~ 479 (558)
-|+-|.+.|+-|.+... ++.++.. ..|.+++++.+++++.+ .++..+.|-||=..-+
T Consensus 12 ~A~gl~~s~~~i~G~~~-~i~~i~~---------------~~~~~~~~~~~~~~~~i~~~~~~~~vliltDl~GGs 71 (129)
T d1pdoa_ 12 AAEQLLKTAEMLLGEQE-NVGWIDF---------------VPGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGS 71 (129)
T ss_dssp HHHHHHHHHHHHHCCCS-SEEEECB---------------CTTCCHHHHHHHHHHHHTTSCCTTCEEEEESSTTSH
T ss_pred HHHHHHHHHHHHhCCCC-CeEEEEc---------------cCCCCHHHHHHHHHHHHHhcCCCCCEEEEEeccccc
Confidence 47788999999998644 4444443 34577899998888776 5678899999964433
No 4
>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
Probab=20.17 E-value=21 Score=28.47 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=25.3
Q ss_pred EeecCccccccccCCCCCCCCCHHHHHHHhhccc
Q 044201 430 HVVRGEKAQNKELWPHLDVDTSPDALLTKLQGMI 463 (558)
Q Consensus 430 HVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~i 463 (558)
|-...|++ -+|.=++|.|||-|++.|++|=
T Consensus 45 HP~gsDLI----fYP~~~~edsPegIv~~IKeWR 74 (85)
T d1gxha_ 45 HPSGSDLI----YYPEGNNDGSPEAVIKEIKEWR 74 (85)
T ss_dssp CTTTTHHH----HSCCSSCSSCTHHHHHHHHHHH
T ss_pred CCCCCcee----eeCCCCCCCCHHHHHHHHHHHH
Confidence 66667777 5788899999999999999884
No 5
>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=20.09 E-value=15 Score=28.42 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=26.6
Q ss_pred CcccccC-ChHHHHHHHHHHhhhccceeeeeecCCcC
Q 044201 120 LRVVNCS-DPRVLIAVERFNLRLFKSIVFLEYQKPVN 155 (558)
Q Consensus 120 ~~p~~Cs-Dp~v~~~~~r~~~~~F~~i~f~~~g~PV~ 155 (558)
-+-|||. +++ +.++++|+.||.|.||.=|.|+.
T Consensus 70 ~a~Vd~~~~~~---l~~~~~I~~yPTi~~f~~g~~~~ 103 (124)
T d1a8ya1 70 FGLVDSEKDAA---VAKKLGLTEEDSIYVFKEDEVIE 103 (124)
T ss_dssp EEEEETTTSHH---HHHTTTCCSTTCEEEEESSSEEE
T ss_pred EEEEEeecccc---hhhccccccCCcEEEeccCccEE
Confidence 4668887 444 57999999999999998877763
No 6
>d1ayia_ a.28.2.1 (A:) ImmE7 protein (Im7) {Escherichia coli [TaxId: 562]}
Probab=18.12 E-value=27 Score=27.93 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=25.6
Q ss_pred EeecCccccccccCCCCCCCCCHHHHHHHhhccc
Q 044201 430 HVVRGEKAQNKELWPHLDVDTSPDALLTKLQGMI 463 (558)
Q Consensus 430 HVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~i 463 (558)
|-..+|.+ -+|.=++|-|||-|++.|++|=
T Consensus 47 HP~gsDLI----yYP~~~~edsPegI~k~IKeWR 76 (86)
T d1ayia_ 47 HPDGTDLI----YYPSDNRDDSPEGIVKEIKEWR 76 (86)
T ss_dssp CTTTTHHH----HSCCTTSCCSHHHHHHHHHHHH
T ss_pred CCCCCcee----eeCCCCCCCCHHHHHHHHHHHH
Confidence 66677777 5788899999999999999884
No 7
>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.45 E-value=27 Score=26.77 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=26.0
Q ss_pred CCcccccCChHHHHHHHHHHhhhccceeeeeecCCc
Q 044201 119 ELRVVNCSDPRVLIAVERFNLRLFKSIVFLEYQKPV 154 (558)
Q Consensus 119 ~~~p~~CsDp~v~~~~~r~~~~~F~~i~f~~~g~PV 154 (558)
.-+-|||.+-. .+..+++++.+|.|.||+=|..+
T Consensus 62 ~~~~vd~~~~~--~l~~~~~v~~~Pti~~f~~g~~~ 95 (119)
T d2b5ea4 62 TLAQIDCTENQ--DLCMEHNIPGFPSLKIFKNSDVN 95 (119)
T ss_dssp EEEEEETTTCH--HHHHHTTCCSSSEEEEEETTCTT
T ss_pred eeeeeeccchH--HHHHHhccccCCeEEEEECCEEe
Confidence 34568888543 56889999999999999866554
No 8
>d2vlqa1 a.28.2.1 (A:4-84) ImmE9 protein (Im9) {Escherichia coli [TaxId: 562]}
Probab=16.18 E-value=39 Score=26.66 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcccCCCCcEEEeecCccccccccCCCCCCCCCHHHHHHHhhccc
Q 044201 410 RLMNIVTEISGQMDWDFDAVHVVRGEKAQNKELWPHLDVDTSPDALLTKLQGMI 463 (558)
Q Consensus 410 rLm~iv~~I~~rm~~DfDavHVrRGDk~~nk~l~P~LD~DtspE~i~~~i~~~i 463 (558)
.|++-..+|.+ |-...|.+ -+|.=++|-|||-|++.|++|=
T Consensus 32 ~l~~hF~~ite---------HP~gsDLI----fYP~~~~edsPegIv~~IK~WR 72 (81)
T d2vlqa1 32 KLVTHFEEMTE---------HPSGSDLI----YYPKEGDDDSPSGIVNTVKQWR 72 (81)
T ss_dssp HHHHHHHHHHC---------CTTTTHHH----HSCCTTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc---------CCCCCcee----eeCCCCCcCCHHHHHHHHHHHH
Confidence 35555555555 66667777 5788899999999999999884
No 9
>d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}
Probab=14.10 E-value=30 Score=26.57 Aligned_cols=38 Identities=11% Similarity=0.041 Sum_probs=31.6
Q ss_pred CHHHHHHHhhcccCCCcEEEEecCCCCccchhhhhcce
Q 044201 451 SPDALLTKLQGMIHPWRNLYIATNEPFYNYFDKLRSQY 488 (558)
Q Consensus 451 spE~i~~~i~~~i~~GR~LYIATnE~~~~fFdpLk~kY 488 (558)
..+++.+.+.+.+++|..|-|++++.-..+-..|.++|
T Consensus 115 ~~~~~i~~~~~~~~~gDiil~mGaGdi~~i~~~l~e~~ 152 (152)
T d1p3da2 115 DTSQLGDVLDQIIQDGDLILAQGAGSVSKISRGLAESW 152 (152)
T ss_dssp CGGGHHHHHHHHCCTTCEEEEECSSTHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhCCCCCEEEEEcCCCHHHHHHHHHhcC
Confidence 46788899999999999999999997777777776655
No 10
>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}
Probab=12.89 E-value=34 Score=25.33 Aligned_cols=33 Identities=15% Similarity=0.445 Sum_probs=25.9
Q ss_pred CCcccccC-ChHHHHHHHHHHhhhccceeeeeecCCc
Q 044201 119 ELRVVNCS-DPRVLIAVERFNLRLFKSIVFLEYQKPV 154 (558)
Q Consensus 119 ~~~p~~Cs-Dp~v~~~~~r~~~~~F~~i~f~~~g~PV 154 (558)
.-.-+||. +|++ ..++++...|.+.+|+=|+++
T Consensus 51 ~~~~vd~~~~~~~---~~~~~V~~~Pt~~~~~~G~~~ 84 (105)
T d1nw2a_ 51 TVAKLNVDENPET---TSQFGIMSIPTLILFKGGEPV 84 (105)
T ss_dssp EEEEEETTTCHHH---HHHTTCCBSSEEEEEETTEEE
T ss_pred EEEEEECCCCccc---HHHCCcceeeEEEEEECCEEE
Confidence 34567777 4443 689999999999999999876
Done!