BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044203
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 67/109 (61%), Gaps = 6/109 (5%)
Query: 44 FQVPLIFFYKNNPSPSMKGKDPVKVIKEALSRALVYYYPFAGRLREGSDGKLMVDCNGEG 103
F P ++FY+ P+ S D KV+K+ALSRALV +YP AGRL+ DG++ ++CNGEG
Sbjct: 39 FHTPSVYFYR--PTGSSNFFD-AKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEG 95
Query: 104 VLFTEADADFSLDQLGDDEIKPPCPYLDELLYDVPGSEGTLGCPLLLIQ 152
VLF EA++D +D GD P L L+ V S+G LL++Q
Sbjct: 96 VLFVEAESDGVVDDFGDFA---PTLELRRLIPAVDYSQGISSYALLVLQ 141
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 67/109 (61%), Gaps = 6/109 (5%)
Query: 44 FQVPLIFFYKNNPSPSMKGKDPVKVIKEALSRALVYYYPFAGRLREGSDGKLMVDCNGEG 103
F P ++FY+ P+ S D KV+K+ALSRALV +YP AGRL+ DG++ ++CNGEG
Sbjct: 39 FHTPSVYFYR--PTGSSNFFD-AKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEG 95
Query: 104 VLFTEADADFSLDQLGDDEIKPPCPYLDELLYDVPGSEGTLGCPLLLIQ 152
VLF EA++D +D GD P L L+ V S+G LL++Q
Sbjct: 96 VLFVEAESDGVVDDFGD---FAPTLELRRLIPAVDYSQGISSYALLVLQ 141
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 67/109 (61%), Gaps = 6/109 (5%)
Query: 44 FQVPLIFFYKNNPSPSMKGKDPVKVIKEALSRALVYYYPFAGRLREGSDGKLMVDCNGEG 103
F P ++FY+ P+ S D KV+K+ALSRALV +YP AGRL+ DG++ ++CNGEG
Sbjct: 36 FHTPSVYFYR--PTGSSNFFD-AKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEG 92
Query: 104 VLFTEADADFSLDQLGDDEIKPPCPYLDELLYDVPGSEGTLGCPLLLIQ 152
VLF EA++D +D GD P L L+ V S+G LL++Q
Sbjct: 93 VLFVEAESDGVVDDFGDFA---PTLELRRLIPAVDYSQGISSYALLVLQ 138
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 18/114 (15%)
Query: 11 VKRRAPELIGPA----LALKSHEVKQLSDIDDQQGLWFQVPLIFFYKNNPSPSMKGKDPV 66
+++ + ELI P+ +LK +++ L DQ L +P I FY P+P DP
Sbjct: 5 MEKVSEELILPSSPTPQSLKCYKISHL----DQLLLTCHIPFILFY---PNPLDSNLDPA 57
Query: 67 KV---IKEALSRALVYYYPFAGRLREGSDGKLMVDCNGEGVLFTEADADFSLDQ 117
+ +K++LS+ L ++YP AGR+ S VDCN GV F EA L Q
Sbjct: 58 QTSQHLKQSLSKVLTHFYPLAGRINVNSS----VDCNDSGVPFVEARVQAQLSQ 107
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 42 LWFQVPLI---FFYKNNPSPSMKGKDPVKVIKEALSRALVYYYPFAGRLR---EGSDGKL 95
W + P I FFY+ + S + V IK +LS L ++YPF G+L +
Sbjct: 35 FWLRSPPINNLFFYELPITRSQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPE 94
Query: 96 MVDCNGEGVLFTEADADFSLDQLGDDE 122
+ G+ V T A+ + L++L +
Sbjct: 95 ICYVEGDSVAVTFAECNLDLNELTGNH 121
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 42 LWFQVPLI---FFYKNNPSPSMKGKDPVKVIKEALSRALVYYYPFAGRLR---EGSDGKL 95
W + P I FFY+ + S + V IK +LS L ++YPF G+L +
Sbjct: 35 FWLRSPPINNLFFYELPITRSQFTETVVPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPE 94
Query: 96 MVDCNGEGVLFTEADADFSLDQLGDDE 122
+ G+ V T A+ + L++L +
Sbjct: 95 ICYVEGDSVAVTFAECNLDLNELTGNH 121
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 49 IFFYKNNPSPSMKGKDPVKVIKEALSRALVYYYPFAGRLREGSDGK-----LMVDCNGEG 103
I FYK S + + +K++LS L YY P AG + D V N
Sbjct: 40 ILFYKLPISRPDFVQTIIPTLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVS 99
Query: 104 VLFTEADADFS 114
V+F+E+D DF+
Sbjct: 100 VIFSESDXDFN 110
>pdb|3OWO|A Chain A, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OWO|B Chain B, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OWO|C Chain C, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OWO|D Chain D, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OX4|A Chain A, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
pdb|3OX4|B Chain B, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
pdb|3OX4|C Chain C, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
pdb|3OX4|D Chain D, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
Length = 383
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 78 VYYYPFAGRLREGSDGKLMVDCNGEG 103
+Y PF + EGS K + D NG G
Sbjct: 5 TFYIPFVNEMGEGSLEKAIKDLNGSG 30
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.142 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,070,079
Number of Sequences: 62578
Number of extensions: 213968
Number of successful extensions: 376
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 365
Number of HSP's gapped (non-prelim): 11
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)