Query 044203
Match_columns 156
No_of_seqs 106 out of 1037
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 21:46:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044203.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044203hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f7la_ d.150.1.2 (A:) Holo-(a 35.3 27 0.002 21.7 4.5 36 68-103 55-95 (118)
2 d1zq1c3 d.128.1.5 (C:5-276,C:4 31.4 23 0.0017 26.5 4.1 23 93-115 170-192 (321)
3 d1q9ja1 c.43.1.2 (A:1-175) Pol 29.2 47 0.0034 21.1 5.1 35 65-99 35-69 (175)
4 d1bvsa3 b.40.4.2 (A:1-63) DNA 25.8 24 0.0017 19.6 2.5 25 82-106 4-28 (63)
5 d2f2ab2 d.128.1.5 (B:4-293) As 23.2 39 0.0028 24.8 3.9 21 95-115 134-154 (290)
6 d2d6fc3 d.128.1.5 (C:1-270,C:3 22.8 38 0.0027 25.2 3.8 21 95-115 171-191 (319)
7 d1g2ra_ d.192.1.1 (A:) Hypothe 19.9 30 0.0022 20.9 2.3 22 86-107 22-47 (94)
8 d2joza1 b.60.1.1 (A:2-127) Hyp 19.5 33 0.0024 21.3 2.4 29 75-103 77-105 (126)
9 d2vqei1 d.14.1.1 (I:2-128) Rib 19.4 27 0.0019 22.4 2.0 19 64-82 71-89 (127)
10 g2gac.1 d.153.1.5 (A:,B:) Glyc 18.1 1.3E+02 0.0092 21.6 5.9 49 64-112 212-268 (275)
No 1
>d1f7la_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS {Bacillus subtilis [TaxId: 1423]}
Probab=35.31 E-value=27 Score=21.72 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhhc-----ccCCeeEeecCCCcEEEEecCCC
Q 044203 68 VIKEALSRALVYY-----YPFAGRLREGSDGKLMVDCNGEG 103 (156)
Q Consensus 68 ~Lk~sLs~~L~~y-----~plAGRL~~~~~g~~~i~cn~~G 103 (156)
+.|+|+.++|..- .+--=.+..+++|+|.+.+++.+
T Consensus 55 AaKEA~~Kalg~g~~~~~~~~dieI~~~~~G~P~~~~~~~~ 95 (118)
T d1f7la_ 55 AAKEAFSKAFGTGIGRQLSFQDIEIRKDQNGKPYIICTKLS 95 (118)
T ss_dssp HHHHHHHHHHTSCSBTTBCGGGCEEEECTTSCEEEEETTTE
T ss_pred HHHHHHHHhcccCCCCCCcccEEEEEECCCCCcEEEecCCc
Confidence 6899999999641 11111233344566666666543
No 2
>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Pyrococcus abyssi [TaxId: 29292]}
Probab=31.43 E-value=23 Score=26.49 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=17.3
Q ss_pred CcEEEEecCCCeEEEEEEcCCCc
Q 044203 93 GKLMVDCNGEGVLFTEADADFSL 115 (156)
Q Consensus 93 g~~~i~cn~~Gv~fv~A~~~~~l 115 (156)
+...++.|-+|+.++|=.+.-++
T Consensus 170 ~~~lvD~NRaGvPLiEIVTePd~ 192 (321)
T d1zq1c3 170 KEVIYRLDRLGIPLIEISTTPDI 192 (321)
T ss_dssp TEEEEESTTTTCEEEEEECCTTB
T ss_pred CceEEeecccCcceEEEeccccc
Confidence 34567889999999998876443
No 3
>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=29.19 E-value=47 Score=21.10 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHhhhcccCCeeEeecCCCcEEEEe
Q 044203 65 PVKVIKEALSRALVYYYPFAGRLREGSDGKLMVDC 99 (156)
Q Consensus 65 ~~~~Lk~sLs~~L~~y~plAGRL~~~~~g~~~i~c 99 (156)
-.+.|++++..++..++-|-.+++.+++|.+....
T Consensus 35 d~~~l~~A~~~lv~rh~~LRt~f~~~~~~~~~~~~ 69 (175)
T d1q9ja1 35 DVDALSDAFDALLETHPVLASHLEQSSDGGWNLVA 69 (175)
T ss_dssp CHHHHHHHHHHHHHHCGGGSEEEEECTTSSEEEEE
T ss_pred CHHHHHHHHHHHHHhchhheEEEEEeCCeeEEEEE
Confidence 57899999999999999999999988776655443
No 4
>d1bvsa3 b.40.4.2 (A:1-63) DNA helicase RuvA subunit, N-terminal domain {Mycobacterium leprae [TaxId: 1769]}
Probab=25.84 E-value=24 Score=19.60 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=19.2
Q ss_pred cCCeeEeecCCCcEEEEecCCCeEE
Q 044203 82 PFAGRLREGSDGKLMVDCNGEGVLF 106 (156)
Q Consensus 82 plAGRL~~~~~g~~~i~cn~~Gv~f 106 (156)
-+.|++...+.+.+.|+|||=|-+.
T Consensus 4 ~i~G~i~~~~~~~ivi~v~GvGY~v 28 (63)
T d1bvsa3 4 SVRGEVLEVALDHAVIEAAGIGYRV 28 (63)
T ss_dssp EECEEEEEECSSCEEEEETTEEECC
T ss_pred EEEEEEEEECCCEEEEEECCEEEEE
Confidence 4679999988889999997544443
No 5
>d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=23.15 E-value=39 Score=24.83 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=15.9
Q ss_pred EEEEecCCCeEEEEEEcCCCc
Q 044203 95 LMVDCNGEGVLFTEADADFSL 115 (156)
Q Consensus 95 ~~i~cn~~Gv~fv~A~~~~~l 115 (156)
-.|+.|-.|+.++|-.++-++
T Consensus 134 slvD~NRaGvPLiEIVTePd~ 154 (290)
T d2f2ab2 134 SLVDLNRQGTPLIEIVSEPDI 154 (290)
T ss_dssp EEEECSSTTCEEEEEEECTTB
T ss_pred cEEeeccCCCceeeeeccCCc
Confidence 347788899999998876443
No 6
>d2d6fc3 d.128.1.5 (C:1-270,C:396-444) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.84 E-value=38 Score=25.22 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=15.7
Q ss_pred EEEEecCCCeEEEEEEcCCCc
Q 044203 95 LMVDCNGEGVLFTEADADFSL 115 (156)
Q Consensus 95 ~~i~cn~~Gv~fv~A~~~~~l 115 (156)
..++.|-.||.++|=.++-++
T Consensus 171 ~~vD~NRaGvPLiEIVTePd~ 191 (319)
T d2d6fc3 171 VVFRLDRLGIPLVEITTDPSM 191 (319)
T ss_dssp EEEETTSTTCEEEEEECCSCC
T ss_pred eEecccccCceeEEEEeeccc
Confidence 456788899999998876433
No 7
>d1g2ra_ d.192.1.1 (A:) Hypothetical cytosolic protein SP0554 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=19.95 E-value=30 Score=20.91 Aligned_cols=22 Identities=23% Similarity=0.628 Sum_probs=16.5
Q ss_pred eEeecCCCcEEEEec----CCCeEEE
Q 044203 86 RLREGSDGKLMVDCN----GEGVLFT 107 (156)
Q Consensus 86 RL~~~~~g~~~i~cn----~~Gv~fv 107 (156)
|++.+++|.+.+|.+ |.|+++.
T Consensus 22 R~v~~~dg~v~~D~~~k~~GRGayl~ 47 (94)
T d1g2ra_ 22 RIVKNKEGQVFIDPTGKANGRGAYIK 47 (94)
T ss_dssp EEEECTTSCEEEETTSCCCSEEEEEE
T ss_pred EEEecCCCcEEEcCCCCCCCCEEEEC
Confidence 777888899999874 4576654
No 8
>d2joza1 b.60.1.1 (A:2-127) Hypothetical protein YxeF {Bacillus subtilis [TaxId: 1423]}
Probab=19.49 E-value=33 Score=21.26 Aligned_cols=29 Identities=34% Similarity=0.690 Sum_probs=23.9
Q ss_pred HHhhhcccCCeeEeecCCCcEEEEecCCC
Q 044203 75 RALVYYYPFAGRLREGSDGKLMVDCNGEG 103 (156)
Q Consensus 75 ~~L~~y~plAGRL~~~~~g~~~i~cn~~G 103 (156)
+-|.+|||+-..|.+.++|.+.-..|++-
T Consensus 77 ~ylg~~~p~kstlkrg~n~tliw~~~g~~ 105 (126)
T d2joza1 77 QYLGPYYPLKSTLKRGENGTLIWEQNGQR 105 (126)
T ss_dssp EEESTTCSCEEEEEECSTTCEEEEETTEE
T ss_pred EEcCCCcchhhHHhCCCCCcEEEEecCce
Confidence 35788999999999999888877777753
No 9
>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus thermophilus [TaxId: 274]}
Probab=19.40 E-value=27 Score=22.43 Aligned_cols=19 Identities=42% Similarity=0.688 Sum_probs=16.7
Q ss_pred ChHHHHHHHHHHHhhhccc
Q 044203 64 DPVKVIKEALSRALVYYYP 82 (156)
Q Consensus 64 ~~~~~Lk~sLs~~L~~y~p 82 (156)
.-+.+++.|+|++|+.|.|
T Consensus 71 gQa~Air~aIaRaL~~~~~ 89 (127)
T d2vqei1 71 GQIDAIKLGIARALVQYNP 89 (127)
T ss_dssp HHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHHCH
Confidence 3688999999999999976
No 10
>g2gac.1 d.153.1.5 (A:,B:) Glycosylasparaginase (aspartylglucosaminidase, AGA) {Flavobacterium meningosepticum [TaxId: 238]}
Probab=18.06 E-value=1.3e+02 Score=21.56 Aligned_cols=49 Identities=22% Similarity=0.305 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHhhhccc--------CCeeEeecCCCcEEEEecCCCeEEEEEEcC
Q 044203 64 DPVKVIKEALSRALVYYYP--------FAGRLREGSDGKLMVDCNGEGVLFTEADAD 112 (156)
Q Consensus 64 ~~~~~Lk~sLs~~L~~y~p--------lAGRL~~~~~g~~~i~cn~~Gv~fv~A~~~ 112 (156)
.+-++.++++.+.+..+.. -+|-|..+.+|+.-..||..|..+.....+
T Consensus 212 ~~~~A~~~ai~~~~~~~~~~g~~~~~~~~G~Iavd~~G~~~~~~~t~~m~~av~~~~ 268 (275)
T g2gac.1 212 TPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCIQDGFNFAVHDQK 268 (275)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEEETTSCEEEEESSSCCCEEEEETT
T ss_pred CHHHHHHHHHHHHHHHhccCCccccccceeEEEEcCCCCEEEEEcCCCceEEEECCC
Confidence 3566777788777765433 346677788899999999999888887654
Done!