BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044205
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 22 DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
DVF++ RG DT+ + LY L R ++R F D+K ++ G + + I + V V
Sbjct: 10 DVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVV 69
Query: 82 FSPTYCQSYFCLHELALMMETKKK----VIPIFCDIKPSQL 118
S Y S +CL EL +M+ +KK V+PIF ++P+ +
Sbjct: 70 VSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHV 110
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 22 DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
+VF++ RG DT+ + LY L R + F D+ + G ++ N+ RAI K+ V +
Sbjct: 37 EVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPI 96
Query: 82 FSPTYCQSYFCLHELALMMETKKK-----VIPIFCDIKPSQL 118
S Y S +CL ELA ++ +++ ++PIF + PS +
Sbjct: 97 ISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDV 138
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 20 PCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGV 79
P D+FI+H D V L + L + D+ +++PGD L +I++ + + + G+
Sbjct: 20 PHDIFISHAWEDKADFVEALAHT-LRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGI 78
Query: 80 AVFSPTYCQSYFCLHEL----ALMMETKKKVIPIFCDIKPSQL 118
V S + + + EL L + +++PI+ + ++
Sbjct: 79 VVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEV 121
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 10/140 (7%)
Query: 22 DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
FI++ G D+ V L +L + + L +N PG + +NI I + V
Sbjct: 14 HAFISYSGHDSFW-VKNELLPNLEKEGXQICLHERNFVPGKSIVENIITCIEKSYKSIFV 72
Query: 82 FSPTYCQSYFCLHELA-----LMMETKKKVIPIFCDIKPSQLLVIDDGKCSANELRR--F 134
SP + QS +C +EL L E +I I + P + K + RR
Sbjct: 73 LSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSLXARRTYL 132
Query: 135 SWALEEAKFTVGLTFDSLKG 154
W E++K GL + +L+
Sbjct: 133 EWPKEKSK--RGLFWANLRA 150
>pdb|1W91|A Chain A, Crystal Structure Of 1,4-Beta-D-Xylan Xylohydrolase Solve
Using Anomalous Signal From Seleniomethionine
pdb|1W91|B Chain B, Crystal Structure Of 1,4-Beta-D-Xylan Xylohydrolase Solve
Using Anomalous Signal From Seleniomethionine
pdb|1W91|C Chain C, Crystal Structure Of 1,4-Beta-D-Xylan Xylohydrolase Solve
Using Anomalous Signal From Seleniomethionine
pdb|1W91|D Chain D, Crystal Structure Of 1,4-Beta-D-Xylan Xylohydrolase Solve
Using Anomalous Signal From Seleniomethionine
pdb|1W91|E Chain E, Crystal Structure Of 1,4-Beta-D-Xylan Xylohydrolase Solve
Using Anomalous Signal From Seleniomethionine
pdb|1W91|F Chain F, Crystal Structure Of 1,4-Beta-D-Xylan Xylohydrolase Solve
Using Anomalous Signal From Seleniomethionine
pdb|1W91|G Chain G, Crystal Structure Of 1,4-Beta-D-Xylan Xylohydrolase Solve
Using Anomalous Signal From Seleniomethionine
pdb|1W91|H Chain H, Crystal Structure Of 1,4-Beta-D-Xylan Xylohydrolase Solve
Using Anomalous Signal From Seleniomethionine
Length = 503
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 11 NRLRNQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINR 70
N+ R+ + FI GI+ +V T L++ + NL F + N + KL++ R
Sbjct: 128 NKWRDLIVAVVSHFIERYGIE---EVRTWLFEVWNEPNLVNFWKDANKQEYFKLYEVTAR 184
Query: 71 AIRNCKVGVAVFSPTYC 87
A+++ + V P C
Sbjct: 185 AVKSVDPHLQVGGPAIC 201
>pdb|2BS9|A Chain A, Native Crystal Structure Of A Gh39 Beta-Xylosidase Xynb1
From Geobacillus Stearothermophilus
pdb|2BS9|B Chain B, Native Crystal Structure Of A Gh39 Beta-Xylosidase Xynb1
From Geobacillus Stearothermophilus
pdb|2BS9|C Chain C, Native Crystal Structure Of A Gh39 Beta-Xylosidase Xynb1
From Geobacillus Stearothermophilus
pdb|2BS9|D Chain D, Native Crystal Structure Of A Gh39 Beta-Xylosidase Xynb1
From Geobacillus Stearothermophilus
pdb|2BS9|E Chain E, Native Crystal Structure Of A Gh39 Beta-Xylosidase Xynb1
From Geobacillus Stearothermophilus
pdb|2BS9|F Chain F, Native Crystal Structure Of A Gh39 Beta-Xylosidase Xynb1
From Geobacillus Stearothermophilus
pdb|2BS9|G Chain G, Native Crystal Structure Of A Gh39 Beta-Xylosidase Xynb1
From Geobacillus Stearothermophilus
pdb|2BS9|H Chain H, Native Crystal Structure Of A Gh39 Beta-Xylosidase Xynb1
From Geobacillus Stearothermophilus
Length = 503
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 11 NRLRNQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINR 70
N+ R+ + FI GI+ +V T L++ + NL F + N + KL++ R
Sbjct: 128 NKWRDLIVAVVSHFIERYGIE---EVRTWLFEVWNEPNLVNFWKDANKQEYFKLYEVTAR 184
Query: 71 AIRNCKVGVAVFSPTYC 87
A+++ + V P C
Sbjct: 185 AVKSVDPHLQVGGPAIC 201
>pdb|3C64|A Chain A, The Mc179 Portion Of The Cysteine-Rich Interdomain Region
(Cidr) Of A Plasmodium Falciparum Erythrocyte Membrane
Protein-1 (Pfemp1)
Length = 179
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 118 LLVIDDGKCSANELRRFSWALEEAKFTVGLTFDSLKGNWSDIVTSASDIIIRSLMEIDYK 177
L +I D ANE++R LE+A G+ F +L G ++ + D I L++ + K
Sbjct: 96 LEIIQDTYGDANEIKRIEALLEQAGVG-GIDFAALAGLYTKGFVAEKDTTIDKLLQHEQK 154
Query: 178 E 178
E
Sbjct: 155 E 155
>pdb|2BFG|A Chain A, Crystal Structure Of Beta-Xylosidase (Fam Gh39) In Complex
With Dinitrophenyl-Beta-Xyloside And Covalently Bound
Xyloside
pdb|2BFG|B Chain B, Crystal Structure Of Beta-Xylosidase (Fam Gh39) In Complex
With Dinitrophenyl-Beta-Xyloside And Covalently Bound
Xyloside
pdb|2BFG|C Chain C, Crystal Structure Of Beta-Xylosidase (Fam Gh39) In Complex
With Dinitrophenyl-Beta-Xyloside And Covalently Bound
Xyloside
pdb|2BFG|D Chain D, Crystal Structure Of Beta-Xylosidase (Fam Gh39) In Complex
With Dinitrophenyl-Beta-Xyloside And Covalently Bound
Xyloside
pdb|2BFG|E Chain E, Crystal Structure Of Beta-Xylosidase (Fam Gh39) In Complex
With Dinitrophenyl-Beta-Xyloside And Covalently Bound
Xyloside
pdb|2BFG|F Chain F, Crystal Structure Of Beta-Xylosidase (Fam Gh39) In Complex
With Dinitrophenyl-Beta-Xyloside And Covalently Bound
Xyloside
pdb|2BFG|G Chain G, Crystal Structure Of Beta-Xylosidase (Fam Gh39) In Complex
With Dinitrophenyl-Beta-Xyloside And Covalently Bound
Xyloside
pdb|2BFG|H Chain H, Crystal Structure Of Beta-Xylosidase (Fam Gh39) In Complex
With Dinitrophenyl-Beta-Xyloside And Covalently Bound
Xyloside
Length = 503
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 11 NRLRNQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINR 70
N+ R+ + FI GI+ +V T L++ + NL F + N + KL++ R
Sbjct: 128 NKWRDLIVAVVSHFIERYGIE---EVRTWLFEVWNAPNLVNFWKDANKQEYFKLYEVTAR 184
Query: 71 AIRNCKVGVAVFSPTYC 87
A+++ + V P C
Sbjct: 185 AVKSVDPHLQVGGPAIC 201
>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|B Chain B, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|E Chain E, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
Length = 371
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 30 IDTKRKVATLLYDHLSRLNLRPFLDNKNMK------PGDKLFDNINRAIRNCKVGVAVFS 83
++ KR + + + L +L F DN N+ PG ++F ++ R R + ++
Sbjct: 110 LNEKRILQAVNFPFLVKLEFS-FKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYA 168
Query: 84 PTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDG 124
++ LH L L I+ D+KP LL+ G
Sbjct: 169 AQIVLTFEYLHSLDL----------IYRDLKPENLLIDQQG 199
>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl)amide
pdb|2C1B|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
(4r,2s)-5'-(4-(4-Chlorobenzyloxy)pyrrolidin-2-
Ylmethanesulfonyl)isoquinoline
pdb|2VO7|A Chain A, Structure Of Pka Complexed With 4-(4-Chlorobenzyl)-1-(7h-
Pyrrolo(2,3-D)pyrimidin-4-Yl)piperidin-4-Ylamine
pdb|3AG9|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
pdb|3AG9|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
Length = 351
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 30 IDTKRKVATLLYDHLSRLNLRPFLDNKNMK------PGDKLFDNINRAIRNCKVGVAVFS 83
++ KR + + + L +L F DN N+ PG ++F ++ R R + ++
Sbjct: 90 LNEKRILQAVNFPFLVKLEFS-FKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYA 148
Query: 84 PTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDG 124
++ LH L L I+ D+KP LL+ G
Sbjct: 149 AQIVLTFEYLHSLDL----------IYRDLKPENLLIDQQG 179
>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 8
pdb|1XH5|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH6|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH8|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|2GFC|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 30 IDTKRKVATLLYDHLSRLNLRPFLDNKNMK------PGDKLFDNINRAIRNCKVGVAVFS 83
++ KR + + + L +L F DN N+ PG ++F ++ R R + ++
Sbjct: 89 LNEKRILQAVNFPFLVKLEFS-FKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYA 147
Query: 84 PTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDG 124
++ LH L L I+ D+KP LL+ G
Sbjct: 148 AQIVLTFEYLHSLDL----------IYRDLKPENLLIDQQG 178
>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol
Length = 351
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 30 IDTKRKVATLLYDHLSRLNLRPFLDNKNMK------PGDKLFDNINRAIRNCKVGVAVFS 83
++ KR + + + L +L F DN N+ PG ++F ++ R R + ++
Sbjct: 90 LNEKRILQAVNFPFLVKLEFS-FKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYA 148
Query: 84 PTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDG 124
++ LH L L I+ D+KP LL+ G
Sbjct: 149 AQIVLTFEYLHSLDL----------IYRDLKPENLLIDQQG 179
>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3AGL|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3VQH|A Chain A, Bromine Sad Partially Resolves Multiple Binding Modes For
Pka Inhibitor H-89
Length = 351
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 30 IDTKRKVATLLYDHLSRLNLRPFLDNKNMK------PGDKLFDNINRAIRNCKVGVAVFS 83
++ KR + + + L +L F DN N+ PG ++F ++ R R + ++
Sbjct: 90 LNEKRILQAVNFPFLVKLEFS-FKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYA 148
Query: 84 PTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDG 124
++ LH L L I+ D+KP LL+ G
Sbjct: 149 AQIVLTFEYLHSLDL----------IYRDLKPENLLIDQQG 179
>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In
Complex With Staurosporine
pdb|1Q8T|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase
(Pka) In Complex With Rho-Kinase Inhibitor Y-27632
pdb|1Q8U|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor H-1152p
pdb|1SVE|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 1
pdb|1SVG|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 4
pdb|1VEB|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 5
pdb|3E8C|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|C Chain C, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|D Chain D, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|F Chain F, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8E|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|I Chain I, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|L Chain L, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|P Chain P, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
Length = 350
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 30 IDTKRKVATLLYDHLSRLNLRPFLDNKNMK------PGDKLFDNINRAIRNCKVGVAVFS 83
++ KR + + + L +L F DN N+ PG ++F ++ R R + ++
Sbjct: 89 LNEKRILQAVNFPFLVKLEFS-FKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYA 147
Query: 84 PTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDG 124
++ LH L L I+ D+KP LL+ G
Sbjct: 148 AQIVLTFEYLHSLDL----------IYRDLKPENLLIDQQG 178
>pdb|2F7E|E Chain E, Pka Complexed With
(S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6-
Yl-Pyridin-3-Yloxymethyl-Etylamine
pdb|2F7X|E Chain E, Protein Kinase A Bound To
(s)-2-(1h-indol-3-yl)-1-[5-((e)-2-
Pyridin-4-yl-vinyl)-pyridin-3-yloxymethyl]-ethylamine
pdb|2F7Z|E Chain E, Protein Kinase A Bound To
(R)-1-(1h-Indol-3-Ylmethyl)-2-(2-
Pyridin-4-Yl-[1,7]naphtyridin-5-Yloxy)-Ehylamine
pdb|2OH0|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
pdb|2OJF|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
Length = 351
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 30 IDTKRKVATLLYDHLSRLNLRPFLDNKNMK------PGDKLFDNINRAIRNCKVGVAVFS 83
++ KR + + + L +L F DN N+ PG ++F ++ R R + ++
Sbjct: 90 LNEKRILQAVNFPFLVKLEFS-FKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYA 148
Query: 84 PTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDG 124
++ LH L L I+ D+KP LL+ G
Sbjct: 149 AQIVLTFEYLHSLDL----------IYRDLKPENLLIDQQG 179
>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-670
pdb|3L9L|A Chain A, Crystal Structure Of Pka With Compound 36
pdb|3L9L|B Chain B, Crystal Structure Of Pka With Compound 36
pdb|3OOG|A Chain A, Human Camp-Dependent Protein Kinase In Complex With A
Small Fragment
pdb|3OVV|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OWP|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OXT|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3P0M|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3POO|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
Length = 351
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 30 IDTKRKVATLLYDHLSRLNLRPFLDNKNMK------PGDKLFDNINRAIRNCKVGVAVFS 83
++ KR + + + L +L F DN N+ PG ++F ++ R R + ++
Sbjct: 90 LNEKRILQAVNFPFLVKLEFS-FKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYA 148
Query: 84 PTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDG 124
++ LH L L I+ D+KP LL+ G
Sbjct: 149 AQIVLTFEYLHSLDL----------IYRDLKPENLLIDQQG 179
>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632
pdb|2GNL|A Chain A, Pka Threefold Mutant Model Of Rho-Kinase With Inhibitor H-
1152p
Length = 350
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 30 IDTKRKVATLLYDHLSRLNLRPFLDNKNMK------PGDKLFDNINRAIRNCKVGVAVFS 83
++ KR + + + L +L F DN N+ PG ++F ++ R R + ++
Sbjct: 89 LNEKRILQAVNFPFLVKLEFS-FKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYA 147
Query: 84 PTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDG 124
++ LH L L I+ D+KP LL+ G
Sbjct: 148 AQIVLTFEYLHSLDL----------IYRDLKPENLLIDQQG 178
>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
pdb|3DNE|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 30 IDTKRKVATLLYDHLSRLNLRPFLDNKNMK------PGDKLFDNINRAIRNCKVGVAVFS 83
++ KR + + + L +L F DN N+ PG ++F ++ R R + ++
Sbjct: 89 LNEKRILQAVNFPFLVKLEFS-FKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYA 147
Query: 84 PTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDG 124
++ LH L L I+ D+KP LL+ G
Sbjct: 148 AQIVLTFEYLHSLDL----------IYRDLKPENLLIDQQG 178
>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors
pdb|2UZU|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
pdb|2UZV|A Chain A, Pka Structures Of Indazole-pyridine Series Of Akt
Inhibitors
pdb|2UZW|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
Length = 336
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 17/108 (15%)
Query: 30 IDTKRKVATLLYDHLSRLNLRPFLDNKNMK------PGDKLFDNINRAIRNCKVGVAVFS 83
++ KR + + + L +L F DN N+ PG ++F ++ R R + ++
Sbjct: 75 LNEKRILQAVNFPFLVKLEFS-FKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYA 133
Query: 84 PTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCSANEL 131
++ LH L L I+ D+KP LL+ G +
Sbjct: 134 AQIVLTFEYLHSLDL----------IYRDLKPENLLIDQQGYIQVTDF 171
>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
pdb|4AE6|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
Length = 343
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 17/108 (15%)
Query: 30 IDTKRKVATLLYDHLSRLNLRPFLDNKNMK------PGDKLFDNINRAIRNCKVGVAVFS 83
++ KR + + + L +L F DN N+ PG ++F ++ R R + ++
Sbjct: 82 LNEKRILQAVNFPFLVKLEFS-FKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYA 140
Query: 84 PTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCSANEL 131
++ LH L L I+ D+KP LL+ G +
Sbjct: 141 AQIVLTFEYLHSLDL----------IYRDLKPENLLIDQQGYIQVTDF 178
>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
A- 443654
Length = 351
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 30 IDTKRKVATLLYDHLSRLNLRPFLDNKNMK------PGDKLFDNINRAIRNCKVGVAVFS 83
++ KR + + + L +L F DN N+ PG ++F ++ R R + ++
Sbjct: 90 LNEKRILQAVNFPFLVKLEFS-FKDNSNLYMVMEYVPGGEMFSHLRRIGRFXEPHARFYA 148
Query: 84 PTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDG 124
++ LH L L I+ D+KP LL+ G
Sbjct: 149 AQIVLTFEYLHSLDL----------IYRDLKPENLLIDQQG 179
>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 30 IDTKRKVATLLYDHLSRLNLRPFLDNKNMK------PGDKLFDNINRAIRNCKVGVAVFS 83
++ KR + + + L +L F DN N+ PG ++F ++ R R + ++
Sbjct: 89 LNEKRILQAVNFPFLVKLEFS-FKDNSNLYMVMEYVPGGEMFSHLRRIGRFXEPHARFYA 147
Query: 84 PTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDG 124
++ LH L L I+ D+KP LL+ G
Sbjct: 148 AQIVLTFEYLHSLDL----------IYRDLKPENLLIDQQG 178
>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077)
pdb|1XH4|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|3BWJ|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Lead Compound Arc-1034
pdb|3KKV|A Chain A, Structure Of Pka With A Protein Kinase B-Selective
Inhibitor
Length = 350
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 30 IDTKRKVATLLYDHLSRLNLRPFLDNKNMK------PGDKLFDNINRAIRNCKVGVAVFS 83
++ KR + + + L +L F DN N+ PG ++F ++ R R + ++
Sbjct: 89 LNEKRILQAVNFPFLVKLEFS-FKDNSNLYMVMEYVPGGEMFSHLRRIGRFXEPHARFYA 147
Query: 84 PTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDG 124
++ LH L L I+ D+KP LL+ G
Sbjct: 148 AQIVLTFEYLHSLDL----------IYRDLKPENLLIDQQG 178
>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of
Camp-Dependent Protein Kinase And An Inhibitor Peptide
Displays An Open Conformation
Length = 350
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 30 IDTKRKVATLLYDHLSRLNLRPFLDNKNMK------PGDKLFDNINRAIRNCKVGVAVFS 83
++ KR + + + L +L F DN N+ PG ++F ++ R R + ++
Sbjct: 89 LNEKRILQAVNFPFLVKLEYS-FKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYA 147
Query: 84 PTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDG 124
++ LH L L I+ D+KP LL+ G
Sbjct: 148 AQIVLTFEYLHSLDL----------IYRDLKPENLLIDQQG 178
>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
pdb|4AE9|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
Length = 343
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 17/108 (15%)
Query: 30 IDTKRKVATLLYDHLSRLNLRPFLDNKNMK------PGDKLFDNINRAIRNCKVGVAVFS 83
++ KR + + + L +L F DN N+ PG ++F ++ R R + ++
Sbjct: 82 LNEKRILQAVNFPFLVKLEFS-FKDNSNLYMVMEYVPGGEMFSHLRRIGRFXEPHARFYA 140
Query: 84 PTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCSANEL 131
++ LH L L I+ D+KP LL+ G +
Sbjct: 141 AQIVLTFEYLHSLDL----------IYRDLKPENLLIDQQGYIQVTDF 178
>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit
Of Camp- Dependent Protein Kinase Reveal Open And Closed
Conformations
Length = 350
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 30 IDTKRKVATLLYDHLSRLNLRPFLDNKNMK------PGDKLFDNINRAIRNCKVGVAVFS 83
++ KR + + + L +L F DN N+ PG ++F ++ R R + ++
Sbjct: 89 LNEKRILQAVNFPFLVKLEYS-FKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYA 147
Query: 84 PTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDG 124
++ LH L L I+ D+KP LL+ G
Sbjct: 148 AQIVLTFEYLHSLDL----------IYRDLKPENLLIDQQG 178
>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
pdb|1CDK|B Chain B, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
Length = 350
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 30 IDTKRKVATLLYDHLSRLNLRPFLDNKNMK------PGDKLFDNINRAIRNCKVGVAVFS 83
++ KR + + + L +L F DN N+ PG ++F ++ R R + ++
Sbjct: 89 LNEKRILQAVNFPFLVKLEYS-FKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYA 147
Query: 84 PTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDG 124
++ LH L L I+ D+KP LL+ G
Sbjct: 148 AQIVLTFEYLHSLDL----------IYRDLKPENLLIDQQG 178
>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Jnj- 7706621
pdb|3AMB|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Vx- 680
Length = 351
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
Query: 52 FLDNKNM------KPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALMMETKKK 105
F DN N+ PG ++F ++ R R + ++ ++ LH L L
Sbjct: 111 FKDNSNLYMVLEYAPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDL------- 163
Query: 106 VIPIFCDIKPSQLLVIDDG 124
I+ D+KP LL+ G
Sbjct: 164 ---IYRDLKPENLLIDQQG 179
>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase
pdb|2GNH|A Chain A, Pka Five Fold Mutant Model Of Rho-Kinase With H1152p
pdb|2GNI|A Chain A, Pka Fivefold Mutant Model Of Rho-Kinase With Inhibitor
Fasudil (Ha1077)
Length = 350
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 30 IDTKRKVATLLYDHLSRLNLRPFLDNKNMK------PGDKLFDNINRAIRNCKVGVAVFS 83
++ KR + + + L +L F DN N+ PG +F ++ R R + ++
Sbjct: 89 LNEKRILQAVNFPFLVKLEFS-FKDNSNLYMVMEYMPGGDMFSHLRRIGRFSEPHARFYA 147
Query: 84 PTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDG 124
++ LH L L I+ D+KP LL+ G
Sbjct: 148 AQIVLTFEYLHSLDL----------IYRDLKPENLLIDQQG 178
>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With
Y- 27632
Length = 350
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 30 IDTKRKVATLLYDHLSRLNLRPFLDNKNMK------PGDKLFDNINRAIRNCKVGVAVFS 83
++ KR + + + L +L F DN N+ PG +F ++ R R + ++
Sbjct: 89 LNEKRILQAVNFPFLVKLEFS-FKDNSNLYMVMEYMPGGDMFSHLRRIGRFSEPHARFYA 147
Query: 84 PTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDG 124
++ LH L L I+ D+KP LL+ G
Sbjct: 148 AQIVLTFEYLHSLDL----------IYRDLKPENLLIDQQG 178
>pdb|1Y7E|A Chain A, The Crystal Structure Of Aminopeptidase I From Borrelia
Burgdorferi B31
Length = 458
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 32 TKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLF 65
T+R+V D +L + KN+ PGDK+F
Sbjct: 34 TEREVTAYALDKAKKLGFINAEEKKNLXPGDKIF 67
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 52 FLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
+ NK + GD++ D N+A CKV +A+
Sbjct: 265 WYSNKLLNHGDQILDEANKAFLGCKVKLAI 294
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 52 FLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
+ NK + GD++ D N+A CKV +A+
Sbjct: 265 WYSNKLLNHGDQILDEANKAFLGCKVKLAI 294
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 5.4
pdb|1Q6F|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 7.1
Length = 495
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 52 FLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
+ NK + GD++ D N+A CKV +A+
Sbjct: 265 WYSNKLLNHGDQILDEANKAFLGCKVKLAI 294
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 52 FLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
+ NK + GD++ D N+A CKV +A+
Sbjct: 265 WYSNKLLNHGDQILDEANKAFLGCKVKLAI 294
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 52 FLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
+ NK + GD++ D N+A CKV +A+
Sbjct: 265 WYSNKLLNHGDQILDEANKAFLGCKVKLAI 294
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 52 FLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
+ NK + GD++ D N+A CKV +A+
Sbjct: 265 WYSNKLLNHGDQILDEANKAFLGCKVKLAI 294
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 52 FLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
+ NK + GD++ D N+A CKV +A+
Sbjct: 265 WYSNKLLNHGDQILDEANKAFLGCKVKLAI 294
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 52 FLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
+ NK + GD++ D N+A CKV +A+
Sbjct: 265 WYSNKLLNHGDQILDEANKAFLGCKVKLAI 294
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 52 FLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
+ NK + GD++ D N+A CKV +A+
Sbjct: 265 WYSNKLLNHGDQILDEANKAFLGCKVKLAI 294
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 52 FLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
+ NK + GD++ D N+A CKV +A+
Sbjct: 261 WYSNKLLNHGDQILDEANKAFLGCKVKLAI 290
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 52 FLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
+ NK + GD++ D N+A CKV +A+
Sbjct: 265 WYSNKLLNHGDQILDEANKAFLGCKVKLAI 294
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 52 FLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
+ NK + GD++ D N+A CKV +A+
Sbjct: 265 WYSNKLLNHGDQILDEANKAFLGCKVKLAI 294
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 52 FLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
+ NK + GD++ D N+A CKV +A+
Sbjct: 265 WYSNKLLNHGDQILDEANKAFLGCKVKLAI 294
>pdb|3LA6|A Chain A, Octameric Kinase Domain Of The E. Coli Tyrosine Kinase Wzc
With Bound Adp
pdb|3LA6|B Chain B, Octameric Kinase Domain Of The E. Coli Tyrosine Kinase Wzc
With Bound Adp
pdb|3LA6|C Chain C, Octameric Kinase Domain Of The E. Coli Tyrosine Kinase Wzc
With Bound Adp
pdb|3LA6|D Chain D, Octameric Kinase Domain Of The E. Coli Tyrosine Kinase Wzc
With Bound Adp
pdb|3LA6|E Chain E, Octameric Kinase Domain Of The E. Coli Tyrosine Kinase Wzc
With Bound Adp
pdb|3LA6|F Chain F, Octameric Kinase Domain Of The E. Coli Tyrosine Kinase Wzc
With Bound Adp
pdb|3LA6|G Chain G, Octameric Kinase Domain Of The E. Coli Tyrosine Kinase Wzc
With Bound Adp
pdb|3LA6|H Chain H, Octameric Kinase Domain Of The E. Coli Tyrosine Kinase Wzc
With Bound Adp
pdb|3LA6|I Chain I, Octameric Kinase Domain Of The E. Coli Tyrosine Kinase Wzc
With Bound Adp
pdb|3LA6|J Chain J, Octameric Kinase Domain Of The E. Coli Tyrosine Kinase Wzc
With Bound Adp
pdb|3LA6|K Chain K, Octameric Kinase Domain Of The E. Coli Tyrosine Kinase Wzc
With Bound Adp
pdb|3LA6|L Chain L, Octameric Kinase Domain Of The E. Coli Tyrosine Kinase Wzc
With Bound Adp
pdb|3LA6|M Chain M, Octameric Kinase Domain Of The E. Coli Tyrosine Kinase Wzc
With Bound Adp
pdb|3LA6|N Chain N, Octameric Kinase Domain Of The E. Coli Tyrosine Kinase Wzc
With Bound Adp
pdb|3LA6|O Chain O, Octameric Kinase Domain Of The E. Coli Tyrosine Kinase Wzc
With Bound Adp
pdb|3LA6|P Chain P, Octameric Kinase Domain Of The E. Coli Tyrosine Kinase Wzc
With Bound Adp
Length = 286
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 83 SPTYCQSYFCLHELALMMETKKKVIPIFCDIK 114
SP+ ++ C + A++ +T K+V+ I CD++
Sbjct: 101 SPSIGMTFVCANLAAVISQTNKRVLLIDCDMR 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,352,237
Number of Sequences: 62578
Number of extensions: 203103
Number of successful extensions: 710
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 57
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)