BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044205
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
Length = 1144
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 13/123 (10%)
Query: 22 DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
DVF++ RG DT++ + LY+ L+ ++ F D+K ++ G + + +AI + + V
Sbjct: 13 DVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVV 72
Query: 82 FSPTYCQSYFCLHELALMMETKKK----VIPIFCDIKPSQLLVIDDGKCSANELRRFSWA 137
FS Y S +CL+EL +ME K + VIPIF D+ PS + N+ F+ A
Sbjct: 73 FSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHV---------RNQKESFAKA 123
Query: 138 LEE 140
EE
Sbjct: 124 FEE 126
>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis
thaliana GN=At4g11170 PE=2 SV=1
Length = 1095
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 15/160 (9%)
Query: 22 DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
DVF + RG D + + L + F D+ ++K + + AIR K+ V +
Sbjct: 12 DVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDD-HIKRSHTIGHELRAAIRESKISVVL 70
Query: 82 FSPTYCQSYFCLHELALMMETKK----KVIPIFCDIKPSQL--------LVIDDGKCSAN 129
FS Y S +CL EL +M+ K+ KV+P+F + PS + + + C
Sbjct: 71 FSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGMSFLETCCGKT 130
Query: 130 ELRRFSW--ALEEAKFTVGLTFDSLKGNWSDIVTSASDII 167
E R+ +W AL +A +G + I T + D++
Sbjct: 131 EERQHNWRRALTDAANILGDHPQNWDNEAYKITTISKDVL 170
>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6
PE=2 SV=1
Length = 392
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 23 VFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVF 82
VFI RG D ++ + L L N+ F+D +N G ++ + + R I ++ + +F
Sbjct: 17 VFICFRGADVRKHFISFLVPALREANINVFID-ENEFLGSEMANLLTR-IEESELALVIF 74
Query: 83 SPTYCQSYFCLHELALMMETKKK----VIPIFCDIKPSQLLVIDDGKCSAN 129
S + +S+ CL+ELA + E K + VIPIF +KPS + + +GK N
Sbjct: 75 SVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFL-EGKFGDN 124
>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8
PE=2 SV=1
Length = 354
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 23 VFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVF 82
VFIN RG D + + L + N+ F+D + D + N+ I+ +V V +F
Sbjct: 16 VFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLV--NLFVRIQESRVAVVIF 73
Query: 83 SPTYCQSYFCLHELALMMETKKK----VIPIFCDIKPSQLLVIDDG 124
S Y S +CL ELA + + + IPIF + PS +L + G
Sbjct: 74 SKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGG 119
>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5
PE=2 SV=1
Length = 411
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 23 VFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGD--KLFDNINRAIRNCKVGVA 80
VFIN RG D ++ + L L + + F+D + + LFD I + K+ +
Sbjct: 24 VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLISLFDTIGES----KIALV 79
Query: 81 VFSPTYCQSYFCLHELALMMETKKK----VIPIF 110
+FS YC+S++C+ EL + E + +IPIF
Sbjct: 80 IFSEGYCESHWCMDELVKIKEYMDQNRLIIIPIF 113
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14
PE=2 SV=1
Length = 571
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 23 VFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVF 82
VFIN RG + + L + + F D ++ G L + + R I +V VA+F
Sbjct: 360 VFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELR-GTNL-NYLFRRIEESRVAVAIF 417
Query: 83 SPTYCQSYFCLHELALMMETKKK----VIPIF 110
S Y +S +CL EL M E ++ V+P+F
Sbjct: 418 SERYTESCWCLDELVKMKEQMEQGKLVVVPVF 449
>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis
thaliana GN=SNC1 PE=1 SV=3
Length = 1301
Score = 37.4 bits (85), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 22 DVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81
DVF + RG D + + L L R F+D++ ++ + + AI+ ++ + +
Sbjct: 13 DVFPSFRGEDVRDSFLSHLLKEL-RGKAITFIDDE-IERSRSIGPELLSAIKESRIAIVI 70
Query: 82 FSPTYCQSYFCLHELALMMET----KKKVIPIFCDIKPSQL 118
FS Y S +CL+EL + + + VIPIF + S++
Sbjct: 71 FSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEV 111
>sp|Q15399|TLR1_HUMAN Toll-like receptor 1 OS=Homo sapiens GN=TLR1 PE=1 SV=3
Length = 786
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 23 VFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVF 82
FI++ G D+ V L +L + ++ L +N PG + +NI I + V
Sbjct: 639 AFISYSGHDS-FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVL 697
Query: 83 SPTYCQSYFCLHEL 96
SP + QS +C +EL
Sbjct: 698 SPNFVQSEWCHYEL 711
>sp|Q9Y2C9|TLR6_HUMAN Toll-like receptor 6 OS=Homo sapiens GN=TLR6 PE=1 SV=2
Length = 796
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 24 FINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFS 83
FI++ D+ V + L +L + +++ L +N PG + +NI I + V S
Sbjct: 645 FISYSEHDSAW-VKSELVPYLEKEDIQICLHERNFVPGKSIVENIINCIEKSYKSIFVLS 703
Query: 84 PTYCQSYFCLHEL 96
P + QS +C +EL
Sbjct: 704 PNFVQSEWCHYEL 716
>sp|Q9EPQ1|TLR1_MOUSE Toll-like receptor 1 OS=Mus musculus GN=Tlr1 PE=1 SV=1
Length = 795
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 24 FINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFS 83
F+++ G D+ V L +L + +++ L +N PG + +NI I + V S
Sbjct: 643 FVSYSGHDSAW-VKNELLPNLEKDDIQICLHERNFVPGKSIVENIINFIEKSYKSIFVLS 701
Query: 84 PTYCQSYFCLHEL 96
P + QS +C +EL
Sbjct: 702 PHFIQSEWCHYEL 714
>sp|Q6R5N8|TLR13_MOUSE Toll-like receptor 13 OS=Mus musculus GN=Tlr13 PE=1 SV=1
Length = 991
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 53 LDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFC-----LHELALMMETKKKVI 107
L ++ +PG +F+NI AI + + V S Y S +C L + + E K +I
Sbjct: 868 LHQRDFEPGIDIFENIQNAINTSRKTLCVVSNHYLHSEWCRLEVQLASMKMFYEHKDVII 927
Query: 108 PIFCDIKPS 116
IF + P+
Sbjct: 928 LIFLEEIPN 936
>sp|Q06595|YP196_YEAST Maltose fermentation regulatory protein YPR196W OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YPR196W PE=3
SV=1
Length = 470
Score = 33.9 bits (76), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 17/104 (16%)
Query: 98 LMMETKKKVIPIFC------DIKPSQLLVIDDGKCSANEL-----------RRFSWALEE 140
L+M + + I C I P Q ++ D + S + + F AL
Sbjct: 232 LLMTERYYAVYIKCVTSLDTTISPPQPEIVTDSRLSLDSFLEVIKVFTVPGKYFYDALAT 291
Query: 141 AKFTVGLTFDSLKGNWSDIVTSASDIIIRSLMEIDYKEQRHWRR 184
T DSLK W+++ S+ DI S IDY RHW R
Sbjct: 292 NSVNGSYTEDSLKRIWNELHISSLDIEPYSYGYIDYLFSRHWVR 335
>sp|Q9EPW9|TLR6_MOUSE Toll-like receptor 6 OS=Mus musculus GN=Tlr6 PE=1 SV=2
Length = 795
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 40 LYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHEL 96
L +L + ++R L +N PG + +NI I + V SP + QS +C +EL
Sbjct: 660 LLPNLEKDDIRVCLHERNFVPGKSIVENIINFIEKSYKAIFVLSPHFIQSEWCHYEL 716
>sp|O95803|NDST3_HUMAN Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3
OS=Homo sapiens GN=NDST3 PE=2 SV=1
Length = 873
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 115 PSQLLVID------DGKCSANELRRFSWALEEAKFTVGLTFDSLKGNWSDIVTSA 163
P QLL+ID D +E+++F L ++ LTFDS KG W ++
Sbjct: 761 PFQLLIIDGQQLRTDPATVMDEVQKFLGVLPHYNYSEALTFDSHKGFWCQLLEEG 815
>sp|Q1QDK7|SYP_PSYCK Proline--tRNA ligase OS=Psychrobacter cryohalolentis (strain K5)
GN=proS PE=3 SV=1
Length = 572
Score = 33.5 bits (75), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 31 DTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFD 66
DT + AT LY+ L L + LD++N +PG K D
Sbjct: 490 DTVMETATALYEELKALGINVLLDDRNERPGVKFAD 525
>sp|Q4FUL6|SYP_PSYA2 Proline--tRNA ligase OS=Psychrobacter arcticus (strain DSM 17307 /
273-4) GN=proS PE=3 SV=1
Length = 572
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 31 DTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFD 66
+T + AT LYD L L + LD++N +PG K D
Sbjct: 490 ETVMQTATALYDELKALGVNVLLDDRNERPGVKFAD 525
>sp|Q704V6|TLR6_BOVIN Toll-like receptor 6 OS=Bos taurus GN=TLR6 PE=2 SV=1
Length = 793
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Query: 40 LYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELA-- 97
L +L + ++R L +N G + +NI I + V SP + QS +C +EL
Sbjct: 660 LIPNLEKEDIRICLHERNFVAGKSIVENIINCIEKSYKSIFVLSPNFVQSEWCHYELYFA 719
Query: 98 ---LMMETKKKVIPIFCDIKPSQLLVIDDGKCSANELRR--FSWALEEAKFTVGLTFDSL 152
L E +I I D P + K A +R W E++K GL + +L
Sbjct: 720 HHNLFHEGSDNLILILLDPIPQYSIPSSYHKLRALMAQRTYLEWPKEKSKH--GLFWANL 777
Query: 153 KGN 155
+ +
Sbjct: 778 RAS 780
>sp|B0BC28|SYP_CHLTB Proline--tRNA ligase OS=Chlamydia trachomatis serovar L2b (strain
UCH-1/proctitis) GN=proS PE=3 SV=1
Length = 581
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 17 AIKPCDVFINHRGIDTKRKVATL-LYDHLSRLNLRPFLDNKNMKPGDKLFDN 67
A+ P + I + G DT+ + L LY L+ P LD++N + G KL D+
Sbjct: 470 AVAPFSITILYNGGDTEGEATALQLYQSLNTEGFEPLLDDRNERLGFKLKDS 521
>sp|B0B7W3|SYP_CHLT2 Proline--tRNA ligase OS=Chlamydia trachomatis serovar L2 (strain
434/Bu / ATCC VR-902B) GN=proS PE=3 SV=1
Length = 581
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 17 AIKPCDVFINHRGIDTKRKVATL-LYDHLSRLNLRPFLDNKNMKPGDKLFDN 67
A+ P + I + G DT+ + L LY L+ P LD++N + G KL D+
Sbjct: 470 AVAPFSITILYNGGDTEGEATALQLYQSLNTEGFEPLLDDRNERLGFKLKDS 521
>sp|P36431|SYP_CHLTR Proline--tRNA ligase OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=proS PE=3 SV=2
Length = 581
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 17 AIKPCDVFINHRGIDTKRKVATL-LYDHLSRLNLRPFLDNKNMKPGDKLFDN 67
A+ P + I + G DT+ + L LY L+ P LD++N + G KL D+
Sbjct: 470 AVAPFSITILYNGGDTEGEATALQLYQSLNTEGFEPLLDDRNERLGFKLKDS 521
>sp|Q3KLW0|SYP_CHLTA Proline--tRNA ligase OS=Chlamydia trachomatis serovar A (strain
HAR-13 / ATCC VR-571B) GN=proS PE=3 SV=1
Length = 581
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 17 AIKPCDVFINHRGIDTKRKVATL-LYDHLSRLNLRPFLDNKNMKPGDKLFDN 67
A+ P + I + G DT+ + L LY L+ P LD++N + G KL D+
Sbjct: 470 AVTPFSITILYNGGDTEGEATALQLYQSLNTEGFEPLLDDRNERLGFKLKDS 521
>sp|P47335|EFG_MYCGE Elongation factor G OS=Mycoplasma genitalium (strain ATCC 33530 /
G-37 / NCTC 10195) GN=fusA PE=3 SV=1
Length = 688
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 15/142 (10%)
Query: 8 FRQNRLRNQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDN 67
F N+ N KP I + +D K+ L + ++ L+ + D + KP + D
Sbjct: 186 FDGNKEENAIEKP----IPEQYVDQVEKLYNNLVEEVASLDDQLMADYLDGKPIE--IDA 239
Query: 68 INRAIRNCKVGVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIKPSQLLVIDDGKCS 127
I AIRN + F P C S F + L+++ +P D+ P++ + ++ + S
Sbjct: 240 IKNAIRNGVIHCKFF-PVLCGSAFKNKGIKLLLDAVVDFLPSPVDVPPAKAIDANNKEIS 298
Query: 128 ANELRRFSWALEEAKFTVGLTF 149
A ++A F +GL F
Sbjct: 299 IK-------ASDDANF-IGLAF 312
>sp|Q9Z2B1|I18RA_MOUSE Interleukin-18 receptor accessory protein OS=Mus musculus
GN=Il18rap PE=2 SV=1
Length = 614
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 19/119 (15%)
Query: 19 KPCDVFINHRGIDTKR--KVATLLYDHLSRLNLRP-----------FLDNKNMKPGDKLF 65
K D F+++ + V +L +HL+ LNL P L ++++ PG
Sbjct: 405 KEFDAFVSYSNWSSPETDAVGSLSEEHLA-LNLFPEVLEDTYGYRLCLLDRDVTPGGVYA 463
Query: 66 DNINRAIRNCKVGVAVFSPTYCQS--YFCLHE---LALMMETKKKVIPIFCDIKPSQLL 119
D+I I+ + G+ + SP+Y F L LAL+ +T K ++ FC + + L
Sbjct: 464 DDIVSIIKKSRRGIFILSPSYLNGPRVFELQAAVNLALVDQTLKLILIKFCSFQEPESL 522
>sp|A4G341|ILVD_HERAR Dihydroxy-acid dehydratase OS=Herminiimonas arsenicoxydans GN=ilvD
PE=3 SV=1
Length = 557
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 17/79 (21%)
Query: 56 KNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALM-----------METKK 104
K++KP D + +AI N VAV T + LH LA+ E +
Sbjct: 245 KDLKPRDIV---TRKAIENA---VAVIMATGGSTNAVLHFLAIAHAAEIDWTIDDFERMR 298
Query: 105 KVIPIFCDIKPSQLLVIDD 123
K +P+ CD+KPS V D
Sbjct: 299 KKVPVICDLKPSGKYVATD 317
>sp|Q6DCQ6|VWA2_XENLA von Willebrand factor A domain-containing protein 2 OS=Xenopus
laevis GN=vwa2 PE=2 SV=1
Length = 790
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 105 KVIPIFCDIK---PSQLLVIDDGKCSANELRRFSWALEEAKFTVGLTFDSLKGNWSDIVT 161
K P+F D++ P ++++ K + ++A ++ F +G+T DS KG ++IV
Sbjct: 434 KSTPVFSDVRDDLPRLVVLLTGSKSQDSVTGPATYARDQEVFLIGVTSDSNKGEMAEIVG 493
Query: 162 SASDIIIRS 170
+ +++ S
Sbjct: 494 NPLNLVTYS 502
>sp|B2LT65|TLR2_SHEEP Toll-like receptor 2 OS=Ovis aries GN=TLR2 PE=2 SV=1
Length = 784
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 22 DVFINHRGIDTKRKVATLLYDHLSRLNLRPF---LDNKNMKPGDKLFDNINRAIRNCKVG 78
D F+++ D+ V L+ L N PF L ++ PG + DNI +I +
Sbjct: 642 DAFVSYSERDSYW-VENLMVQELEHFN-PPFKLCLHKRDFVPGKWIIDNIIDSIEKSRKT 699
Query: 79 VAVFSPTYCQSYFCLHEL 96
+ V S ++ +S +C +EL
Sbjct: 700 IFVLSESFVRSEWCKYEL 717
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,971,547
Number of Sequences: 539616
Number of extensions: 2616241
Number of successful extensions: 8285
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 8264
Number of HSP's gapped (non-prelim): 37
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)