Query 044205
Match_columns 192
No_of_seqs 252 out of 1430
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 21:47:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 1.9E-50 6.6E-55 320.3 7.1 158 14-175 2-174 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 2.8E-49 9.6E-54 319.2 12.1 156 16-173 31-202 (204)
3 3h16_A TIR protein; bacteria T 100.0 5.7E-32 2E-36 209.8 7.6 108 17-126 17-128 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.9 2.3E-27 8E-32 182.7 0.7 103 15-119 5-113 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 4.1E-25 1.4E-29 170.5 3.2 101 17-119 2-111 (149)
6 2js7_A Myeloid differentiation 99.9 7E-25 2.4E-29 171.2 4.3 99 15-115 11-117 (160)
7 2j67_A TOLL like receptor 10; 99.9 1.8E-24 6.2E-29 171.7 4.4 98 15-114 30-135 (178)
8 1t3g_A X-linked interleukin-1 99.9 6.3E-24 2.2E-28 165.6 6.0 98 19-116 1-115 (159)
9 3j0a_A TOLL-like receptor 5; m 99.7 5.6E-18 1.9E-22 160.2 9.2 100 15-116 665-775 (844)
10 1eiw_A Hypothetical protein MT 98.6 3E-08 1E-12 72.4 4.5 74 18-111 2-75 (111)
11 3hyn_A Putative signal transdu 98.0 6.8E-05 2.3E-09 59.0 10.7 118 20-140 5-146 (189)
12 2f62_A Nucleoside 2-deoxyribos 95.3 0.12 4.2E-06 39.5 9.1 76 34-109 26-104 (161)
13 4fyk_A Deoxyribonucleoside 5'- 93.5 0.36 1.2E-05 36.6 8.0 86 22-111 4-102 (152)
14 2khz_A C-MYC-responsive protei 92.1 1.3 4.4E-05 33.5 9.6 88 18-109 9-109 (165)
15 3ehd_A Uncharacterized conserv 91.1 1.2 4.2E-05 33.9 8.4 75 35-110 20-104 (162)
16 3hjn_A DTMP kinase, thymidylat 85.5 7.9 0.00027 29.6 9.9 144 24-170 2-192 (197)
17 1s2d_A Purine trans deoxyribos 84.6 4.4 0.00015 30.8 7.8 86 22-110 9-116 (167)
18 2yvq_A Carbamoyl-phosphate syn 83.7 2.1 7.2E-05 31.6 5.6 83 2-86 6-106 (143)
19 3dt5_A Uncharacterized protein 72.0 2.5 8.5E-05 29.6 2.6 52 85-140 36-100 (135)
20 1f8y_A Nucleoside 2-deoxyribos 71.4 6.5 0.00022 29.5 5.1 86 22-110 5-113 (157)
21 4hlc_A DTMP kinase, thymidylat 57.8 61 0.0021 24.7 11.6 147 23-173 3-204 (205)
22 1byr_A Protein (endonuclease); 53.8 35 0.0012 24.1 6.2 36 36-72 15-50 (155)
23 1evl_A Threonyl-tRNA synthetas 48.6 51 0.0018 27.8 7.3 61 18-83 296-356 (401)
24 2jug_A TUBC protein; docking d 47.8 13 0.00043 24.3 2.6 40 37-76 7-49 (78)
25 1v95_A Nuclear receptor coacti 46.2 62 0.0021 23.5 6.4 45 34-80 21-66 (130)
26 2i4l_A Proline-tRNA ligase; al 44.7 28 0.00094 30.3 5.0 60 19-83 364-426 (458)
27 1nj1_A PROR, proline-tRNA synt 40.0 33 0.0011 30.3 4.8 60 19-83 313-377 (501)
28 1wu7_A Histidyl-tRNA synthetas 38.9 47 0.0016 28.3 5.6 59 19-83 331-390 (434)
29 3net_A Histidyl-tRNA synthetas 38.5 67 0.0023 27.9 6.5 62 18-84 369-430 (465)
30 4g85_A Histidine-tRNA ligase, 36.7 1.1E+02 0.0038 26.7 7.7 63 17-83 416-478 (517)
31 4g84_A Histidine--tRNA ligase, 36.6 94 0.0032 26.5 7.2 63 17-83 363-425 (464)
32 3lc0_A Histidyl-tRNA synthetas 36.6 91 0.0031 27.1 7.1 61 18-83 359-419 (456)
33 2d00_A V-type ATP synthase sub 36.1 1.1E+02 0.0036 21.2 6.7 65 42-114 16-80 (109)
34 1hc7_A Prolyl-tRNA synthetase; 35.9 46 0.0016 29.1 5.1 38 19-56 286-327 (477)
35 1htt_A Histidyl-tRNA synthetas 35.3 91 0.0031 26.3 6.8 60 18-83 325-387 (423)
36 4e51_A Histidine--tRNA ligase; 33.2 97 0.0033 26.9 6.7 65 18-83 352-416 (467)
37 3aon_B V-type sodium ATPase su 32.5 27 0.00092 24.7 2.5 62 43-114 16-77 (115)
38 1shu_X Anthrax toxin receptor 31.0 1.4E+02 0.0049 21.2 8.6 91 60-171 80-181 (182)
39 2j3l_A Prolyl-tRNA synthetase; 30.9 1.2E+02 0.0041 26.8 7.0 63 19-85 469-533 (572)
40 1v7p_C Integrin alpha-2; snake 30.2 1.6E+02 0.0055 21.5 6.9 102 61-174 83-198 (200)
41 4dik_A Flavoprotein; TM0755, e 29.4 2.1E+02 0.0073 24.3 8.2 66 22-90 267-334 (410)
42 1qe0_A Histidyl-tRNA synthetas 29.0 1.2E+02 0.0042 25.4 6.5 61 18-83 327-387 (420)
43 1qf6_A THRRS, threonyl-tRNA sy 28.0 1.8E+02 0.0062 26.3 7.8 63 18-85 537-599 (642)
44 4hvc_A Bifunctional glutamate/ 27.4 68 0.0023 28.6 4.7 50 16-65 304-363 (519)
45 2zt5_A Glycyl-tRNA synthetase; 27.1 1.7E+02 0.0058 26.9 7.5 62 19-84 558-620 (693)
46 1bax_A M-PMV MA, M-PMV matrix 26.7 34 0.0012 23.6 2.0 18 34-51 9-26 (94)
47 3n2n_F Anthrax toxin receptor 26.2 1.3E+02 0.0044 21.5 5.5 91 60-171 81-184 (185)
48 2q62_A ARSH; alpha/beta, flavo 25.9 1.8E+02 0.0061 22.9 6.6 54 35-89 52-112 (247)
49 1nyr_A Threonyl-tRNA synthetas 25.8 72 0.0024 28.9 4.7 61 19-83 544-604 (645)
50 2fz5_A Flavodoxin; alpha/beta 25.5 1.6E+02 0.0054 19.8 5.8 46 34-89 14-60 (137)
51 3n75_A LDC, lysine decarboxyla 25.3 1.4E+02 0.0048 27.6 6.6 69 35-115 17-85 (715)
52 2ql9_B Caspase-7; cysteine pro 24.2 18 0.00063 24.5 0.3 24 25-48 24-47 (97)
53 3ikl_A DNA polymerase subunit 24.0 64 0.0022 28.4 3.8 38 19-56 347-388 (459)
54 1sc3_B Interleukin-1 beta conv 23.6 22 0.00076 23.8 0.6 25 24-48 21-45 (88)
55 1qtn_B Caspase-8; apoptosis, d 23.3 17 0.00058 24.7 -0.0 30 18-47 10-48 (95)
56 1pt6_A Integrin alpha-1; cell 22.4 65 0.0022 24.1 3.2 111 62-184 85-209 (213)
57 2fcj_A Small toprim domain pro 21.7 32 0.0011 24.6 1.2 49 35-87 39-87 (119)
58 2lpy_A Matrix protein P10; GAG 21.3 50 0.0017 23.9 2.1 20 34-53 8-27 (124)
59 3uh0_A Threonyl-tRNA synthetas 21.3 1.1E+02 0.0038 26.5 4.9 62 18-83 343-420 (460)
60 2dko_B Caspase-3; low barrier 21.3 23 0.00078 24.4 0.3 31 18-48 14-53 (103)
61 2fzv_A Putative arsenical resi 21.0 1.3E+02 0.0043 24.5 4.9 54 35-89 76-137 (279)
62 1pyo_B Caspase-2; apoptosis, c 20.8 24 0.0008 24.4 0.3 24 25-48 28-51 (105)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.9e-50 Score=320.29 Aligned_cols=158 Identities=25% Similarity=0.425 Sum_probs=129.1
Q ss_pred CCCCCCCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCchhHH
Q 044205 14 RNQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCL 93 (192)
Q Consensus 14 ~~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~ 93 (192)
+.+..++|||||||+|+|+|++|+++|+.+|+++||++|+|++++.+|+.+.++|.+||++|+++|+|||+||++|+||+
T Consensus 2 sss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl 81 (176)
T 3jrn_A 2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCL 81 (176)
T ss_dssp -----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHH
T ss_pred CCCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHH
Confidence 45678999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc----CceeeEEeecCCCcccccccCCC-----------chhHhhhHHHHHHHHHHhcCccccCCCCCHHH
Q 044205 94 HELALMMETK----KKVIPIFCDIKPSQLLVIDDGKC-----------SANELRRFSWALEEAKFTVGLTFDSLKGNWSD 158 (192)
Q Consensus 94 ~EL~~~~~~~----~~ViPVf~~v~p~~vr~~~~g~~-----------~~~~~~~W~~aL~~~~~~~G~~~~~~~~~~~~ 158 (192)
+||.+|++|. +.||||||+|+|++||+|+ |.| +++++++|+.||+++|+++||++. ++|++
T Consensus 82 ~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~-g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~---~~e~~ 157 (176)
T 3jrn_A 82 DELVTIMDFEKKGSITVMPIFYGVEPNHVRWQT-GVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG---DDDSK 157 (176)
T ss_dssp HHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTC-THHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC---SCHHH
T ss_pred HHHHHHHhhhccCCCEEEEEEecCCHHHhhhcc-CcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC---CCHHH
Confidence 9999999874 5999999999999999998 765 457899999999999999999984 57999
Q ss_pred HHHHHHHHHHHHhhhcC
Q 044205 159 IVTSASDIIIRSLMEID 175 (192)
Q Consensus 159 ~v~~Iv~~v~~~l~~~~ 175 (192)
+|++||++|+++|+..|
T Consensus 158 ~i~~Iv~~v~~~l~~~~ 174 (176)
T 3jrn_A 158 LVDKIANEISNKKTIYA 174 (176)
T ss_dssp HHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999997654
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=2.8e-49 Score=319.18 Aligned_cols=156 Identities=25% Similarity=0.421 Sum_probs=144.4
Q ss_pred CCCCCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCchhHHHH
Q 044205 16 QAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHE 95 (192)
Q Consensus 16 ~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~E 95 (192)
.+.++|||||||+|+|+|++|+++|+.+|+++||++|+|++++.+|+.+.++|.+||++|+++|+|||++|++|.||++|
T Consensus 31 ~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~E 110 (204)
T 3ozi_A 31 FPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLME 110 (204)
T ss_dssp ---CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHH
T ss_pred CCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc-----CceeeEEeecCCCcccccccCCC-----------chhHhhhHHHHHHHHHHhcCccccCCCCCHHHH
Q 044205 96 LALMMETK-----KKVIPIFCDIKPSQLLVIDDGKC-----------SANELRRFSWALEEAKFTVGLTFDSLKGNWSDI 159 (192)
Q Consensus 96 L~~~~~~~-----~~ViPVf~~v~p~~vr~~~~g~~-----------~~~~~~~W~~aL~~~~~~~G~~~~~~~~~~~~~ 159 (192)
|.+|++|. ++||||||+|+|++||+|+ |.| .++++++|+.||+++|+++||++.. ..+++++
T Consensus 111 L~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~-g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~-~~~e~~~ 188 (204)
T 3ozi_A 111 LAEIVRRQEEDPRRIILPIFYMVDPSDVRHQT-GCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGK-NDKQGAI 188 (204)
T ss_dssp HHHHHHHHHHCTTSEECCEEESSCHHHHHHTC-TTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECT-TSCHHHH
T ss_pred HHHHHHHHHhcCCeeeEEEEeecCHHHHHhcc-ccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCC-CCCHHHH
Confidence 99999873 5899999999999999998 765 4578999999999999999999975 5689999
Q ss_pred HHHHHHHHHHHhhh
Q 044205 160 VTSASDIIIRSLME 173 (192)
Q Consensus 160 v~~Iv~~v~~~l~~ 173 (192)
|++||++|.++|.+
T Consensus 189 i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 189 ADKVSADIWSHISK 202 (204)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999964
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.97 E-value=5.7e-32 Score=209.75 Aligned_cols=108 Identities=20% Similarity=0.424 Sum_probs=101.5
Q ss_pred CCCCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCchhHHHHH
Q 044205 17 AIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHEL 96 (192)
Q Consensus 17 ~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL 96 (192)
+.++|||||||+++| +..|+.+|+.+|+++|+++|+|.+++.+|+.|.++|.++|++|+++|+|+|++|++|.||++||
T Consensus 17 ~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El 95 (154)
T 3h16_A 17 SAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKEL 95 (154)
T ss_dssp -CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHH
T ss_pred CCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHH
Confidence 468999999999999 5679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc----CceeeEEeecCCCcccccccCCC
Q 044205 97 ALMMETK----KKVIPIFCDIKPSQLLVIDDGKC 126 (192)
Q Consensus 97 ~~~~~~~----~~ViPVf~~v~p~~vr~~~~g~~ 126 (192)
..++++. ++||||||+++|++|++|. |.|
T Consensus 96 ~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~-~~~ 128 (154)
T 3h16_A 96 DGLFQLESSGRSRILPIWHKVSKDEVASFS-PTM 128 (154)
T ss_dssp HHHTCCCTTSCCCEEEEEESCCTGGGTTTC-CCC
T ss_pred HHHHHHHhcCCCEEEEEEecCCHHHHhhCC-ccH
Confidence 9999863 5899999999999999997 765
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.93 E-value=2.3e-27 Score=182.74 Aligned_cols=103 Identities=20% Similarity=0.336 Sum_probs=77.7
Q ss_pred CCCCCCccEEEecccccCchhHHHHHHHHHhc--CCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCchhH
Q 044205 15 NQAIKPCDVFINHRGIDTKRKVATLLYDHLSR--LNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFC 92 (192)
Q Consensus 15 ~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~--~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc 92 (192)
+...+.|||||||+++|+ .||.+|..+|++ .|+++|+|++++.+|+.+.++|.++|++|+++|+|+|++|++|.||
T Consensus 5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 456789999999999996 579999999998 5999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc----CceeeEEeecCCCccc
Q 044205 93 LHELALMMETK----KKVIPIFCDIKPSQLL 119 (192)
Q Consensus 93 ~~EL~~~~~~~----~~ViPVf~~v~p~~vr 119 (192)
..|+..|+.+. ++||||||+++++++.
T Consensus 83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp 113 (146)
T 3ub2_A 83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYP 113 (146)
T ss_dssp HHHHHHHHHTSSSSSSEEEEEECSCCGGGSC
T ss_pred HHHHHHHHHHHhhcCCcEEEEEcCCChhhCC
Confidence 99999999763 3788999998755543
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.90 E-value=4.1e-25 Score=170.48 Aligned_cols=101 Identities=19% Similarity=0.251 Sum_probs=89.7
Q ss_pred CCCCccEEEecccccCchhHHHH-HHHHHhcC--CCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCchhHH
Q 044205 17 AIKPCDVFINHRGIDTKRKVATL-LYDHLSRL--NLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCL 93 (192)
Q Consensus 17 ~~~~ydVFISy~~~D~~~~fv~~-L~~~L~~~--gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~ 93 (192)
.++.|||||||+++|. .||.+ |...|++. |+++|+|++++.+|+.+.++|.++|++|+++|+|+||+|++|.||.
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 3578999999999995 79996 99999986 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-----hcCceeeEEee-cCCCccc
Q 044205 94 HELALMME-----TKKKVIPIFCD-IKPSQLL 119 (192)
Q Consensus 94 ~EL~~~~~-----~~~~ViPVf~~-v~p~~vr 119 (192)
.|+..|+. .++.||||||+ +++..+.
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p 111 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP 111 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence 99999874 24589999995 4444443
No 6
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.90 E-value=7e-25 Score=171.21 Aligned_cols=99 Identities=21% Similarity=0.323 Sum_probs=90.0
Q ss_pred CCCCCCccEEEecccccCchhHHHHHHHHHhcC--CCeeEEeCCCCCCCCchHHHHHHHHH-hcceeEEEecCCCCCchh
Q 044205 15 NQAIKPCDVFINHRGIDTKRKVATLLYDHLSRL--NLRPFLDNKNMKPGDKLFDNINRAIR-NCKVGVAVFSPTYCQSYF 91 (192)
Q Consensus 15 ~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~--gi~vf~D~~~l~~G~~~~~~i~~aI~-~S~~~Ivv~S~~y~~S~w 91 (192)
++..+.|||||||+++| ..||.+|..+|++. |+++|+|++++.+|+.+.++|.++|+ +|+.+|+|+|++|++|.|
T Consensus 11 ~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w 88 (160)
T 2js7_A 11 GHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE 88 (160)
T ss_dssp SCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred CCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence 44578999999999999 47999999999984 69999999999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHhh-----cCceeeEEeecCC
Q 044205 92 CLHELALMMET-----KKKVIPIFCDIKP 115 (192)
Q Consensus 92 c~~EL~~~~~~-----~~~ViPVf~~v~p 115 (192)
|..|+..|+++ ++.||||+|+.-+
T Consensus 89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 89 CDFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 99999999975 2489999997653
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.89 E-value=1.8e-24 Score=171.66 Aligned_cols=98 Identities=19% Similarity=0.252 Sum_probs=87.8
Q ss_pred CCCCCCccEEEecccccCchhHHHH-HHHHHhc--CCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCchh
Q 044205 15 NQAIKPCDVFINHRGIDTKRKVATL-LYDHLSR--LNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYF 91 (192)
Q Consensus 15 ~~~~~~ydVFISy~~~D~~~~fv~~-L~~~L~~--~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~w 91 (192)
.+..+.|||||||+++|. +||.. |...|++ .|+++|+|++++.+|+.+.++|.++|++|+.+|+|+||+|++|.|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 456789999999999995 79975 9999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-----cCceeeEEeecC
Q 044205 92 CLHELALMMET-----KKKVIPIFCDIK 114 (192)
Q Consensus 92 c~~EL~~~~~~-----~~~ViPVf~~v~ 114 (192)
|..|+..|+.+ ++.||||||+.-
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i 135 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPI 135 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCC
Confidence 99999999853 358999999643
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.89 E-value=6.3e-24 Score=165.62 Aligned_cols=98 Identities=19% Similarity=0.402 Sum_probs=87.1
Q ss_pred CCccEEEecccccC---------chhHHHHHHH-HHh-cCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCC
Q 044205 19 KPCDVFINHRGIDT---------KRKVATLLYD-HLS-RLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYC 87 (192)
Q Consensus 19 ~~ydVFISy~~~D~---------~~~fv~~L~~-~L~-~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~ 87 (192)
+.|||||||+++|. ++.||.+|.. .|+ +.|+++|+|++++.+|+.+.++|.++|++|+.+|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 57999999999996 3679988665 699 799999999999999999999999999999999999999997
Q ss_pred -CchhHHHHHHHHHhh-----cCceeeEEeecCCC
Q 044205 88 -QSYFCLHELALMMET-----KKKVIPIFCDIKPS 116 (192)
Q Consensus 88 -~S~wc~~EL~~~~~~-----~~~ViPVf~~v~p~ 116 (192)
.|.||..|+..|+.+ +..||||+++..+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 999999999998864 35899999976554
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.73 E-value=5.6e-18 Score=160.20 Aligned_cols=100 Identities=17% Similarity=0.306 Sum_probs=89.1
Q ss_pred CCCCCCccEEEecccccCchhHH-HHHHHHHhc-----CCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCC
Q 044205 15 NQAIKPCDVFINHRGIDTKRKVA-TLLYDHLSR-----LNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQ 88 (192)
Q Consensus 15 ~~~~~~ydVFISy~~~D~~~~fv-~~L~~~L~~-----~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~ 88 (192)
....+.|||||||+++|. .|| ..|...|+. .|+++|++++|+.||+.+.++|.++|++|+.+|+|+|++|+.
T Consensus 665 ~~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~ 742 (844)
T 3j0a_A 665 EPDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLR 742 (844)
T ss_dssp SSSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHH
T ss_pred cccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEecccccc
Confidence 446789999999999995 577 679999985 589999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhh-----cCceeeEEeecCCC
Q 044205 89 SYFCLHELALMMET-----KKKVIPIFCDIKPS 116 (192)
Q Consensus 89 S~wc~~EL~~~~~~-----~~~ViPVf~~v~p~ 116 (192)
|.||..|+..|+.+ +++||||||+..|.
T Consensus 743 s~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 743 DGWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp HTSTTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred ChHHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 99999999998743 46899999975543
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.61 E-value=3e-08 Score=72.44 Aligned_cols=74 Identities=9% Similarity=0.082 Sum_probs=59.6
Q ss_pred CCCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCchhHHHHHH
Q 044205 18 IKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELA 97 (192)
Q Consensus 18 ~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~ 97 (192)
.++|.+||||+.+| . ...|...|.+.|+.. .| ..|+.|+++|++.++...+|+||..|+.
T Consensus 2 ~~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~-~~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~ 61 (111)
T 1eiw_A 2 TAEIRLYITEGEVE-D---YRVFLERLEQSGLEW-RP---------------ATPEDADAVIVLAGLWGTRRDEILGAVD 61 (111)
T ss_dssp CCCEEEEECCCCSH-H---HHHHHHHHHHHCSCE-EE---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHH
T ss_pred CceEEEEEecccHh-H---HHHHHHHHhCCCCee-ec---------------CccccCCEEEEEeCCCcCCChHHHHHHH
Confidence 35899999999988 2 455555565556643 33 5589999999999999999999999999
Q ss_pred HHHhhcCceeeEEe
Q 044205 98 LMMETKKKVIPIFC 111 (192)
Q Consensus 98 ~~~~~~~~ViPVf~ 111 (192)
.|.+.+++|+-|.-
T Consensus 62 ~A~~~gkpIigV~~ 75 (111)
T 1eiw_A 62 LARKSSKPIITVRP 75 (111)
T ss_dssp HHTTTTCCEEEECC
T ss_pred HHHHcCCCEEEEEc
Confidence 99999998887764
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=97.98 E-value=6.8e-05 Score=58.96 Aligned_cols=118 Identities=15% Similarity=0.088 Sum_probs=86.7
Q ss_pred CccEEEec--------------ccccCchhHHHHHHHHHhcCCCeeEEeCCCC----C---C-CCchHHHHHHHHHhcce
Q 044205 20 PCDVFINH--------------RGIDTKRKVATLLYDHLSRLNLRPFLDNKNM----K---P-GDKLFDNINRAIRNCKV 77 (192)
Q Consensus 20 ~ydVFISy--------------~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l----~---~-G~~~~~~i~~aI~~S~~ 77 (192)
+--+|++| ..+|. ...+.|..--.+..+-.|.|..+. . . -..|...|.+.|..|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 34578888 44553 457778777777766667776544 2 2 34588999999999999
Q ss_pred eEEEecCCCCCchhHHHHHHHHH-hhcCceeeEEeecC-CCcccccccCCCchhHhhhHHHHHHH
Q 044205 78 GVAVFSPTYCQSYFCLHELALMM-ETKKKVIPIFCDIK-PSQLLVIDDGKCSANELRRFSWALEE 140 (192)
Q Consensus 78 ~Ivv~S~~y~~S~wc~~EL~~~~-~~~~~ViPVf~~v~-p~~vr~~~~g~~~~~~~~~W~~aL~~ 140 (192)
+|+++|++...|.|...|+..|+ +++.+||-|..+-. .+++.. .+|.+....-..|..++..
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~~~~~PII~Vy~~~~~~~~i~~-~~g~~~~~~~~~wpk~p~~ 146 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIGTKGLPVIVIYPDYDKKSDIVD-SNGNFKKQIKDLWDKLPAF 146 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTTTTCCCEEEEETTCCSGGGTBC-TTSCBCHHHHHHHHTCHHH
T ss_pred EEEEEecCccccchhHHHHHHHHHhcCCcEEEEECCccccchhhh-ccccchhhHhhcCCcchhh
Confidence 99999999999999999999999 89999999987633 334443 2355555555678864443
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=95.27 E-value=0.12 Score=39.47 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHhcCCCeeEEeCCCCC-CCCchHHHHHHHHHhcceeEEEecC--CCCCchhHHHHHHHHHhhcCceeeE
Q 044205 34 RKVATLLYDHLSRLNLRPFLDNKNMK-PGDKLFDNINRAIRNCKVGVAVFSP--TYCQSYFCLHELALMMETKKKVIPI 109 (192)
Q Consensus 34 ~~fv~~L~~~L~~~gi~vf~D~~~l~-~G~~~~~~i~~aI~~S~~~Ivv~S~--~y~~S~wc~~EL~~~~~~~~~ViPV 109 (192)
..+...+.+.|++.|+.+|.-.++-. .+..+.+.=.++|++|+++|++++| .-..+.-+..|+..+...+++|+-+
T Consensus 26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l 104 (161)
T 2f62_A 26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTF 104 (161)
T ss_dssp HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEE
Confidence 36789999999999999987432111 1223333447899999999999996 3233455889999999999977654
No 13
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=93.48 E-value=0.36 Score=36.59 Aligned_cols=86 Identities=16% Similarity=0.193 Sum_probs=58.0
Q ss_pred cEEEe--cccccCchhHHHHHHHHHhcCCCeeEEeC---CCC-CCCC-------chHHHHHHHHHhcceeEEEecCCCCC
Q 044205 22 DVFIN--HRGIDTKRKVATLLYDHLSRLNLRPFLDN---KNM-KPGD-------KLFDNINRAIRNCKVGVAVFSPTYCQ 88 (192)
Q Consensus 22 dVFIS--y~~~D~~~~fv~~L~~~L~~~gi~vf~D~---~~l-~~G~-------~~~~~i~~aI~~S~~~Ivv~S~~y~~ 88 (192)
.||++ +++.+....+...+.+.|++.| .|+... .++ ..|+ .+.+.-.+.|++|+++|++++ ..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 36665 3332333467899999999999 675421 111 1121 255556688999999999998 45
Q ss_pred chhHHHHHHHHHhhcCceeeEEe
Q 044205 89 SYFCLHELALMMETKKKVIPIFC 111 (192)
Q Consensus 89 S~wc~~EL~~~~~~~~~ViPVf~ 111 (192)
|.=...|+..|...+++|+-++-
T Consensus 80 d~Gt~~EiG~A~algkPV~~l~~ 102 (152)
T 4fyk_A 80 SLGVGYELGRAVALGKPILCLFR 102 (152)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCHHHHHHHHHHcCCeEEEEEe
Confidence 67788899999999997776554
No 14
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=92.10 E-value=1.3 Score=33.54 Aligned_cols=88 Identities=15% Similarity=0.153 Sum_probs=58.7
Q ss_pred CCCccEEEecccc--cCchhHHHHHHHHHhcCCCeeEEeCCC----CCCCC-------chHHHHHHHHHhcceeEEEecC
Q 044205 18 IKPCDVFINHRGI--DTKRKVATLLYDHLSRLNLRPFLDNKN----MKPGD-------KLFDNINRAIRNCKVGVAVFSP 84 (192)
Q Consensus 18 ~~~ydVFISy~~~--D~~~~fv~~L~~~L~~~gi~vf~D~~~----l~~G~-------~~~~~i~~aI~~S~~~Ivv~S~ 84 (192)
+++..|||+=.-. .........+.+.|++.| .|+.+..- -..|. .+...-.+.|++|+++|++++
T Consensus 9 ~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~- 86 (165)
T 2khz_A 9 QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT- 86 (165)
T ss_dssp CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS-
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC-
Confidence 3455799983222 111224588999999999 88654321 11221 122333578999999999997
Q ss_pred CCCCchhHHHHHHHHHhhcCceeeE
Q 044205 85 TYCQSYFCLHELALMMETKKKVIPI 109 (192)
Q Consensus 85 ~y~~S~wc~~EL~~~~~~~~~ViPV 109 (192)
..+.-+..|+..+...+++|+-+
T Consensus 87 --~~d~Gt~~EiGyA~algKPVi~l 109 (165)
T 2khz_A 87 --QPSLGVGYELGRAVALGKPILCL 109 (165)
T ss_dssp --SCCHHHHHHHHHHHHTCSSEEEE
T ss_pred --CCCCCHHHHHHHHHHCCCEEEEE
Confidence 45677999999999999988765
No 15
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=91.09 E-value=1.2 Score=33.87 Aligned_cols=75 Identities=12% Similarity=0.166 Sum_probs=54.0
Q ss_pred hHHHHHHHHHhcC--CCeeEEeCCCC----CCCCc----hHHHHHHHHHhcceeEEEecCCCCCchhHHHHHHHHHhhcC
Q 044205 35 KVATLLYDHLSRL--NLRPFLDNKNM----KPGDK----LFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALMMETKK 104 (192)
Q Consensus 35 ~fv~~L~~~L~~~--gi~vf~D~~~l----~~G~~----~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~~~~~~~ 104 (192)
.+...+.++|+.. |+.+|.-.++- .++.. +...=.++|++|+++|+++.. ...+..+..|+..+...++
T Consensus 20 ~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ldg-~~~D~Gt~~EiG~A~a~gk 98 (162)
T 3ehd_A 20 RYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLDG-PTIDAGVASEIGVAYAKGI 98 (162)
T ss_dssp HHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECCS-SSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECCC-CCCCCCHHHHHHHHHHCCC
Confidence 4678899999875 88888733221 12223 334445689999999999953 3456789999999999999
Q ss_pred ceeeEE
Q 044205 105 KVIPIF 110 (192)
Q Consensus 105 ~ViPVf 110 (192)
+|+.+.
T Consensus 99 PVi~~~ 104 (162)
T 3ehd_A 99 PVVALY 104 (162)
T ss_dssp CEEEEC
T ss_pred EEEEEE
Confidence 877664
No 16
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=85.49 E-value=7.9 Score=29.65 Aligned_cols=144 Identities=19% Similarity=0.182 Sum_probs=77.8
Q ss_pred EEecccccC--chhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhc--------------------------
Q 044205 24 FINHRGIDT--KRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNC-------------------------- 75 (192)
Q Consensus 24 FISy~~~D~--~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S-------------------------- 75 (192)
||.+-|-|. +.+.+..|.+.|+.+|++|..-.+ +.|..+.+.+.+.+...
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre--P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L 79 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE--PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL 79 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES--SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC--CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877664 245788899999999998866432 33444444433322111
Q ss_pred ceeEEEecCCCCCchhHHH--------H----HHHHHhh-cCceeeEEeecCCCcccccc--cCCC-chhHhhhHHHHHH
Q 044205 76 KVGVAVFSPTYCQSYFCLH--------E----LALMMET-KKKVIPIFCDIKPSQLLVID--DGKC-SANELRRFSWALE 139 (192)
Q Consensus 76 ~~~Ivv~S~~y~~S~wc~~--------E----L~~~~~~-~~~ViPVf~~v~p~~vr~~~--~g~~-~~~~~~~W~~aL~ 139 (192)
..--+|++..|..|....+ + |...... -.+=+-+|++++|.....-. ..+| ..+..++-+++..
T Consensus 80 ~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~e~~ef~~rv~~~y~ 159 (197)
T 3hjn_A 80 SEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKREFLERVREGYL 159 (197)
T ss_dssp TTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTTCCHHHHHHHHHHHH
T ss_pred HCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCccccHHHHHHHHHHHH
Confidence 1123466777877765433 1 1111111 13555577888886532221 1233 2344556777777
Q ss_pred HHHHhcCc--c-ccCCCCCHHHHHHHHHHHHHHH
Q 044205 140 EAKFTVGL--T-FDSLKGNWSDIVTSASDIIIRS 170 (192)
Q Consensus 140 ~~~~~~G~--~-~~~~~~~~~~~v~~Iv~~v~~~ 170 (192)
+++...+. . .+. +.+..+..++|.+.|.++
T Consensus 160 ~la~~~~~~~~~IDa-~~~~eeV~~~I~~~i~~r 192 (197)
T 3hjn_A 160 VLAREHPERIVVLDG-KRSIEEIHRDVVREVKRR 192 (197)
T ss_dssp HHHHHCTTTEEEEET-TSCHHHHHHHHHHHHSCC
T ss_pred HHHHhCCCCEEEEcC-CCCHHHHHHHHHHHHHHH
Confidence 77776553 2 343 345545555555555443
No 17
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=84.55 E-value=4.4 Score=30.77 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=59.4
Q ss_pred cEEEe---cccccCchhHHHHHHHHHhcC--CCeeEEeCCC-C--------CCC--------CchHHHHHHHHHhcceeE
Q 044205 22 DVFIN---HRGIDTKRKVATLLYDHLSRL--NLRPFLDNKN-M--------KPG--------DKLFDNINRAIRNCKVGV 79 (192)
Q Consensus 22 dVFIS---y~~~D~~~~fv~~L~~~L~~~--gi~vf~D~~~-l--------~~G--------~~~~~~i~~aI~~S~~~I 79 (192)
.||+. |+..+ ..+...+.+.|++. |+.+|.-.++ . ..| ..+.+.=.++|++|+++|
T Consensus 9 kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV 86 (167)
T 1s2d_A 9 KIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV 86 (167)
T ss_dssp EEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence 47776 23222 35788999999999 8888864331 1 111 123344457899999999
Q ss_pred EEecCCCCCchhHHHHHHHHHhhcCceeeEE
Q 044205 80 AVFSPTYCQSYFCLHELALMMETKKKVIPIF 110 (192)
Q Consensus 80 vv~S~~y~~S~wc~~EL~~~~~~~~~ViPVf 110 (192)
+++...-. ++=+..|+..+...+++|+-+.
T Consensus 87 A~ldg~~~-D~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 87 FLYDMDQL-DDGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp EEEESSSC-CHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCC-CCCceeehhhHhhCCCeEEEEE
Confidence 99987554 4568889999999999887764
No 18
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=83.71 E-value=2.1 Score=31.56 Aligned_cols=83 Identities=10% Similarity=0.089 Sum_probs=48.5
Q ss_pred cccchhhhccccCCCCCCCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeC-------------CC---CCCC-Cc-
Q 044205 2 NLQRQVFRQNRLRNQAIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDN-------------KN---MKPG-DK- 63 (192)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~-------------~~---l~~G-~~- 63 (192)
+|..-+.+.+.+.+..-.+.-||||.++.|. .-+..+.+.|...|++++--. .. +.-| +.
T Consensus 6 ~~~~A~~Ka~~aag~~lP~~gvliSv~d~dK--~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~ 83 (143)
T 2yvq_A 6 SGHTAFLKAMLSTGFKIPQKGILIGIQQSFR--PRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNP 83 (143)
T ss_dssp CCCHHHHHHHTSCSCCCCCSEEEEECCGGGH--HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC----
T ss_pred CHHHHHHHHHHhcCCCCCCCCEEEEecccch--HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCccc
Confidence 4555566666655443322229999987663 335567778888888877211 11 1112 10
Q ss_pred hHHHHHHHHHhcceeEEEecCCC
Q 044205 64 LFDNINRAIRNCKVGVAVFSPTY 86 (192)
Q Consensus 64 ~~~~i~~aI~~S~~~Ivv~S~~y 86 (192)
-.++|.+.|++-++-+||.+|+-
T Consensus 84 ~~~~i~d~i~~g~i~lVInt~~~ 106 (143)
T 2yvq_A 84 SLSSIRKLIRDGSIDLVINLPNN 106 (143)
T ss_dssp -CBCHHHHHHTTSCCEEEECCCC
T ss_pred ccccHHHHHHCCCceEEEECCCC
Confidence 00357777888888888887765
No 19
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=72.00 E-value=2.5 Score=29.63 Aligned_cols=52 Identities=15% Similarity=0.411 Sum_probs=35.6
Q ss_pred CCCCchhHHHHHHHHHhhcC--------ceeeEEeecCCCcccccccCC-----CchhHhhhHHHHHHH
Q 044205 85 TYCQSYFCLHELALMMETKK--------KVIPIFCDIKPSQLLVIDDGK-----CSANELRRFSWALEE 140 (192)
Q Consensus 85 ~y~~S~wc~~EL~~~~~~~~--------~ViPVf~~v~p~~vr~~~~g~-----~~~~~~~~W~~aL~~ 140 (192)
+|+-..-.-+|+..++.|++ +|+|.-++.....+. |+ |..+.+++|++||.-
T Consensus 36 syvytaqtedeietiitcrrylagnnllrvlpmhfkfkadkia----gsanwtfyakedfeqwkealdv 100 (135)
T 3dt5_A 36 SYVYTAQTEDEIETIITCRRYLAGNNLLRVLPMHFKFKADKIA----GSANWTFYAKEDFEQWKEALDV 100 (135)
T ss_dssp SSCCCTTHHHHHHHHHHTTGGGSCHHHHHHCCSCCGGGEECCT----TCSSEEESSHHHHHHHHHHHHH
T ss_pred hHheeccchhHHHHHHHHHHHhcccchhhhcchheeeecchhc----cccceeEEeHhhHHHHHHHHHH
Confidence 35555567889999999875 677766654333322 33 457889999999873
No 20
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=71.35 E-value=6.5 Score=29.47 Aligned_cols=86 Identities=13% Similarity=0.161 Sum_probs=57.3
Q ss_pred cEEEe---cccccCchhHHHHHHHHHhcCCC----eeEEeCCCCC---------C---C----CchHHHHHHHHHhccee
Q 044205 22 DVFIN---HRGIDTKRKVATLLYDHLSRLNL----RPFLDNKNMK---------P---G----DKLFDNINRAIRNCKVG 78 (192)
Q Consensus 22 dVFIS---y~~~D~~~~fv~~L~~~L~~~gi----~vf~D~~~l~---------~---G----~~~~~~i~~aI~~S~~~ 78 (192)
.||++ |+... ......+.+.|+..|. .+|.-.++-. . + ..+.+.=.++|++|+++
T Consensus 5 kIYLAGP~F~~~q--~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~v 82 (157)
T 1f8y_A 5 TIYFGAGWFTDRQ--NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIM 82 (157)
T ss_dssp CEEEECCCSSHHH--HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEE
Confidence 36665 33222 3578889999999985 6665432111 1 1 12334445789999999
Q ss_pred EEEecCCCCCchhHHHHHHHHHhhcCceeeEE
Q 044205 79 VAVFSPTYCQSYFCLHELALMMETKKKVIPIF 110 (192)
Q Consensus 79 Ivv~S~~y~~S~wc~~EL~~~~~~~~~ViPVf 110 (192)
|+++...- .++=+..|+..+...+++|+-+.
T Consensus 83 vA~ldg~~-~D~GT~~EiGyA~A~gkPVv~~~ 113 (157)
T 1f8y_A 83 LGVYIPDE-EDVGLGMELGYALSQGKYVLLVI 113 (157)
T ss_dssp EEECCGGG-CCHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEcCCCC-CCccHHHHHHHHHHCCCeEEEEE
Confidence 99997433 34568889999999999886654
No 21
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=57.80 E-value=61 Score=24.72 Aligned_cols=147 Identities=14% Similarity=0.199 Sum_probs=73.4
Q ss_pred EEEecccccC--chhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhc-------------------------
Q 044205 23 VFINHRGIDT--KRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNC------------------------- 75 (192)
Q Consensus 23 VFISy~~~D~--~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S------------------------- 75 (192)
-||.+-|-|. +.+.+..|.+.|. +|+++..-.+ +.|.++.+.|.+.+.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~e--P~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~ 79 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTRE--PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVI 79 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEES--STTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEeeC--CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4888877664 2456788888886 5887765432 22333332222221110
Q ss_pred ---ceeEEEecCCCCCchhHHH---------HHHHHH----hhcCceeeEEeecCCCccccc--ccC----CCchh---H
Q 044205 76 ---KVGVAVFSPTYCQSYFCLH---------ELALMM----ETKKKVIPIFCDIKPSQLLVI--DDG----KCSAN---E 130 (192)
Q Consensus 76 ---~~~Ivv~S~~y~~S~wc~~---------EL~~~~----~~~~~ViPVf~~v~p~~vr~~--~~g----~~~~~---~ 130 (192)
...-+|++..|..|....+ .+..+. ..-++=+-||++++|.....- ..| ++..+ -
T Consensus 80 p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~~~~f 159 (205)
T 4hlc_A 80 PALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKF 159 (205)
T ss_dssp HHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHHHHHH
T ss_pred HHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhccCHHH
Confidence 1123466777776665432 111111 111344457889988763221 112 23221 2
Q ss_pred hhhHHHHHHHHHHhcC--cc-ccCCCCCHHHHHHHHHHHHHHHhhh
Q 044205 131 LRRFSWALEEAKFTVG--LT-FDSLKGNWSDIVTSASDIIIRSLME 173 (192)
Q Consensus 131 ~~~W~~aL~~~~~~~G--~~-~~~~~~~~~~~v~~Iv~~v~~~l~~ 173 (192)
.++=+++..+++...+ +. ++. +.+..+..++|.+.|.+.|.+
T Consensus 160 ~~~v~~~Y~~l~~~~~~~~~~IDa-~~~~e~V~~~i~~~i~~~L~~ 204 (205)
T 4hlc_A 160 HEKVIEGYQEIIHNESQRFKSVNA-DQPLENVVEDTYQTIIKYLEK 204 (205)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEET-TSCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEC-CCCHHHHHHHHHHHHHHHHhc
Confidence 2344556555555433 32 343 455666667777777776643
No 22
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=53.81 E-value=35 Score=24.14 Aligned_cols=36 Identities=6% Similarity=0.054 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHH
Q 044205 36 VATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAI 72 (192)
Q Consensus 36 fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI 72 (192)
+...+.+.+.+..-.+++-...+ +.+.+.+.|.++.
T Consensus 15 ~~~~~~~~i~~A~~~I~i~~~~~-~~~~i~~aL~~a~ 50 (155)
T 1byr_A 15 ARVLVLSAIDSAKTSIRMMAYSF-TAPDIMKALVAAK 50 (155)
T ss_dssp HHHHHHHHHHHCSSEEEEEESSB-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhEEEEEEEEe-CCHHHHHHHHHHH
Confidence 45566666665554555443333 3344555555544
No 23
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=48.59 E-value=51 Score=27.81 Aligned_cols=61 Identities=18% Similarity=0.103 Sum_probs=40.9
Q ss_pred CCCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEec
Q 044205 18 IKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFS 83 (192)
Q Consensus 18 ~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S 83 (192)
...++|+|---+++. ...+..|.+.|.+.|++|-+|.. +..+...+..|-..---.++++.
T Consensus 296 ~ap~~v~vi~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~----~~~~~~k~~~A~~~g~p~~iiiG 356 (401)
T 1evl_A 296 LAPVQVVIMNITDSQ-SEYVNELTQKLSNAGIRVKADLR----NEKIGFKIREHTLRRVPYMLVCG 356 (401)
T ss_dssp TCSSCEEEEESSGGG-HHHHHHHHHHHHHTTCCEEEECC----SSCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCeEEEEEecCHHH-HHHHHHHHHHHHHCCCEEEEECC----CCCHHHHHHHHHhcCCCEEEEEC
Confidence 356899887655443 46788999999999999999874 34566666655433333444443
No 24
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=47.79 E-value=13 Score=24.27 Aligned_cols=40 Identities=15% Similarity=0.392 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCCeeEEeCCCCC---CCCchHHHHHHHHHhcc
Q 044205 37 ATLLYDHLSRLNLRPFLDNKNMK---PGDKLFDNINRAIRNCK 76 (192)
Q Consensus 37 v~~L~~~L~~~gi~vf~D~~~l~---~G~~~~~~i~~aI~~S~ 76 (192)
+..|...|.+.||..|.|.+.++ |-..+.+++...+...+
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~K 49 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGAR 49 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHHH
Confidence 45677899999999999987654 33346666666665543
No 25
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=46.22 E-value=62 Score=23.45 Aligned_cols=45 Identities=11% Similarity=0.038 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHh-cceeEE
Q 044205 34 RKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRN-CKVGVA 80 (192)
Q Consensus 34 ~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~-S~~~Iv 80 (192)
..++..+...|...|++|=+|.. .+++.+...|.++-.+ .-+.+|
T Consensus 21 ~~YA~~V~~~L~~~GiRvevD~~--r~~e~Lg~kIR~a~~~kvPy~lV 66 (130)
T 1v95_A 21 KDYAESVGRKVRDLGMVVDLIFL--NTEVSLSQALEDVSRGGSPFAIV 66 (130)
T ss_dssp GHHHHHHHHHHHTTTCCEEEEEC--TTSSCHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEecC--CCCCcHHHHHHHHHHcCCCEEEE
Confidence 57899999999999999999863 2356677677665433 343333
No 26
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=44.73 E-value=28 Score=30.28 Aligned_cols=60 Identities=15% Similarity=0.076 Sum_probs=37.8
Q ss_pred CCccEEEeccc--ccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHH-hcceeEEEec
Q 044205 19 KPCDVFINHRG--IDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIR-NCKVGVAVFS 83 (192)
Q Consensus 19 ~~ydVFISy~~--~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~-~S~~~Ivv~S 83 (192)
..++|+|---+ .+.....+..|++.|.+.|++|.+|.++ ..+...+..|-. +.. .++++.
T Consensus 364 ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~----~~~g~k~~~ad~~g~p-~~iivG 426 (458)
T 2i4l_A 364 APFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTD----QRAGAKFATADLIGIP-WQIHVG 426 (458)
T ss_dssp CSCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSS----CCHHHHHHHHHHHTCS-EEEEEC
T ss_pred CCceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCC----CCHHHHHHHHHhcCCC-EEEEEC
Confidence 46889887432 1223457889999999999999999764 344445544332 333 344444
No 27
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=39.99 E-value=33 Score=30.32 Aligned_cols=60 Identities=12% Similarity=0.027 Sum_probs=38.4
Q ss_pred CCccEEEecc-c-cc--CchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHH-hcceeEEEec
Q 044205 19 KPCDVFINHR-G-ID--TKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIR-NCKVGVAVFS 83 (192)
Q Consensus 19 ~~ydVFISy~-~-~D--~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~-~S~~~Ivv~S 83 (192)
..|+|+|--- + .+ .-...+..|.+.|.+.|++|-+|.++- .+...+..+-. +... ++++.
T Consensus 313 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~----s~g~k~~~a~~~G~p~-~iiiG 377 (501)
T 1nj1_A 313 AAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDI----RAGRKYYEWEMRGVPL-RVEIG 377 (501)
T ss_dssp SSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSS----CHHHHHHHHHHEECSE-EEEEC
T ss_pred cCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCC----CHHHHHHHHHhcCCCE-EEEEC
Confidence 5688987754 3 31 234678999999999999999997643 34445544332 3443 34443
No 28
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=38.94 E-value=47 Score=28.33 Aligned_cols=59 Identities=12% Similarity=0.138 Sum_probs=38.9
Q ss_pred CCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHH-hcceeEEEec
Q 044205 19 KPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIR-NCKVGVAVFS 83 (192)
Q Consensus 19 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~-~S~~~Ivv~S 83 (192)
..+||+|..-+++. ...+..+.+.|.+.|++|-+|..+ ..+...+..|-. +... ++|+.
T Consensus 331 ~p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~~~g~~~-~iiiG 390 (434)
T 1wu7_A 331 EKKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIME----RGLSAQLKYASAIGADF-AVIFG 390 (434)
T ss_dssp SSCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCSC----CCHHHHHHHHHHTTCSE-EEEEE
T ss_pred CCCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecCC----CCHHHHHHHHHHCCCCE-EEEEC
Confidence 35899966554443 456889999999999999998643 345555655433 3444 44443
No 29
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=38.49 E-value=67 Score=27.88 Aligned_cols=62 Identities=10% Similarity=0.039 Sum_probs=42.1
Q ss_pred CCCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecC
Q 044205 18 IKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSP 84 (192)
Q Consensus 18 ~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~ 84 (192)
...+||+|-.-+++. ...+..+.+.|.+.|++|-+|..+ ..+...+..|-..---.++++.+
T Consensus 369 ~~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~~----~sl~~q~k~A~~~g~p~~iiiG~ 430 (465)
T 3net_A 369 PTPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFEK----RQLGKQFQAADKQGIRFCVIIGA 430 (465)
T ss_dssp SCSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCSC----CCHHHHHHHHHHHTCCEEEECCH
T ss_pred CCCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeCC----CCHHHHHHHHHHcCCCEEEEECc
Confidence 456899987655543 356889999999999999998653 45556666654443335555543
No 30
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=36.65 E-value=1.1e+02 Score=26.73 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=40.9
Q ss_pred CCCCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEec
Q 044205 17 AIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFS 83 (192)
Q Consensus 17 ~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S 83 (192)
.....||||..-+++. ...+-.|...|.+.||+|-+|.. .+..+...+..|=..---.++|+.
T Consensus 416 ~~~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~~~viiG 478 (517)
T 4g85_A 416 RTTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK---KNPKLLNQLQYCEEAGIPLVAIIG 478 (517)
T ss_dssp CSCCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECSS---SSCCHHHHHHHHHHHCCCEEEEEC
T ss_pred cCCCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC---CCCCHHHHHHHHHHCCCCEEEEEC
Confidence 4567899987765543 34578899999999999987642 233566666655443223444443
No 31
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=36.61 E-value=94 Score=26.49 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=40.6
Q ss_pred CCCCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEec
Q 044205 17 AIKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFS 83 (192)
Q Consensus 17 ~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S 83 (192)
.....||+|...+++. ...+-.|...|.++||+|-+|.. .+..+...+..|=..---.++|+.
T Consensus 363 ~~~~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~~~viiG 425 (464)
T 4g84_A 363 RTTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK---KNPKLLNQLQYCEEAGIPLVAIIG 425 (464)
T ss_dssp CSCCCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCSC---SSCCHHHHHHHHHHHTCCEEEECC
T ss_pred ccccceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC---CCCCHHHHHHHHHHCCCCEEEEEC
Confidence 3456789998776554 34578899999999999977642 233466666555443222444443
No 32
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=36.56 E-value=91 Score=27.06 Aligned_cols=61 Identities=13% Similarity=-0.006 Sum_probs=41.5
Q ss_pred CCCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEec
Q 044205 18 IKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFS 83 (192)
Q Consensus 18 ~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S 83 (192)
....||||..-+++.. .-+-.+...|.+.|++|-+|.. +..+...+..|-+.---.++++.
T Consensus 359 ~~~~~v~v~~~~~~~~-~~a~~la~~LR~~Gi~ve~~~~----~~slkkq~k~A~k~ga~~vviiG 419 (456)
T 3lc0_A 359 PHVVDDVVIPFDESMR-PHALAVLRRLRDAGRSADIILD----KKKVVQAFNYADRVGAVRAVLVA 419 (456)
T ss_dssp CCCEEEEEEESSGGGH-HHHHHHHHHHHHTTCCEEECCS----CCCHHHHHHHHHHTTEEEEEEEC
T ss_pred CCCCcEEEEEcCHHHH-HHHHHHHHHHHHCCCeEEEecC----CCCHHHHHHHHHHcCCCEEEEEC
Confidence 3457888776555543 4577899999999999988753 33466677666655444555554
No 33
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=36.12 E-value=1.1e+02 Score=21.21 Aligned_cols=65 Identities=6% Similarity=0.090 Sum_probs=44.0
Q ss_pred HHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCchhHHHHHHHHHhhcCceeeEEeecC
Q 044205 42 DHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIK 114 (192)
Q Consensus 42 ~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~~~~~~~~ViPVf~~v~ 114 (192)
..+.-.|+.+|... ..+.+.+.+.+.+++.++.|++++++.+. .+.+++..... ...+|++..+.
T Consensus 16 ~GFrLaGi~~~~v~----~~ee~~~~~~~l~~~~digIIlIte~~a~--~i~~~i~~~~~--~~~~P~Il~IP 80 (109)
T 2d00_A 16 QGFRLAGLEGYGAS----SAEEAQSLLETLVERGGYALVAVDEALLP--DPERAVERLMR--GRDLPVLLPIA 80 (109)
T ss_dssp HHHHHTTSEEEECS----SHHHHHHHHHHHHHHCCCSEEEEETTTCS--CHHHHHHHHTT--CCCCCEEEEES
T ss_pred HHHHHcCCeEEEeC----CHHHHHHHHHHHhhCCCeEEEEEeHHHHH--hhHHHHHHHHh--CCCCeEEEEEC
Confidence 34556899888542 33556777888888889999999999887 35555544431 34467776644
No 34
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=35.87 E-value=46 Score=29.15 Aligned_cols=38 Identities=26% Similarity=0.207 Sum_probs=29.1
Q ss_pred CCccEEEecccc-c---CchhHHHHHHHHHhcCCCeeEEeCC
Q 044205 19 KPCDVFINHRGI-D---TKRKVATLLYDHLSRLNLRPFLDNK 56 (192)
Q Consensus 19 ~~ydVFISy~~~-D---~~~~fv~~L~~~L~~~gi~vf~D~~ 56 (192)
..++|+|---+. | .-...+..|.+.|...|++|-+|.+
T Consensus 286 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~ 327 (477)
T 1hc7_A 286 APIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDR 327 (477)
T ss_dssp CSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCC
T ss_pred CCceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 568898875443 2 2245788999999999999999975
No 35
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=35.26 E-value=91 Score=26.30 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=40.2
Q ss_pred CCCccEEEecccccCchhHHHHHHHHHhcC--CCeeEEeCCCCCCCCchHHHHHHHHH-hcceeEEEec
Q 044205 18 IKPCDVFINHRGIDTKRKVATLLYDHLSRL--NLRPFLDNKNMKPGDKLFDNINRAIR-NCKVGVAVFS 83 (192)
Q Consensus 18 ~~~ydVFISy~~~D~~~~fv~~L~~~L~~~--gi~vf~D~~~l~~G~~~~~~i~~aI~-~S~~~Ivv~S 83 (192)
...+||+|-.-+++. ...+..|.+.|.+. |++|-+|..+ ..+...+..|-. +.. .++++.
T Consensus 325 ~~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~~~Gi~v~~d~~~----~~~~~~~~~a~~~g~p-~~iiiG 387 (423)
T 1htt_A 325 DPVVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNHGG----GNFKKQFARADKWGAR-VAVVLG 387 (423)
T ss_dssp CCSCSEEEEECSTTH-HHHHHHHHHHHHHHSTTCCEEECCSC----CCHHHHHHHHHHHTCS-EEEEEC
T ss_pred CCCCcEEEEEcCHHH-HHHHHHHHHHHHcCCCCcEEEEeCCC----CCHHHHHHHHHHcCCC-EEEEEC
Confidence 456899888755443 45688999999999 9999998653 345556655433 344 444443
No 36
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=33.16 E-value=97 Score=26.89 Aligned_cols=65 Identities=20% Similarity=0.274 Sum_probs=43.1
Q ss_pred CCCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEec
Q 044205 18 IKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFS 83 (192)
Q Consensus 18 ~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S 83 (192)
....||+|-.-+++. ...+..+.+.|.+.|++|-+|...-..+..+...+..|-..---.++|+.
T Consensus 352 ~~p~~V~Vip~~~~~-~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG 416 (467)
T 4e51_A 352 QEGVDVYVVHQGDAA-REQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFG 416 (467)
T ss_dssp CCCCSEEEEECSHHH-HHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCCeEEEEEcChHH-HHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 355799876554443 34688999999999999999864100256677777776554334555554
No 37
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=32.47 E-value=27 Score=24.72 Aligned_cols=62 Identities=10% Similarity=0.136 Sum_probs=41.4
Q ss_pred HHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCchhHHHHHHHHHhhcCceeeEEeecC
Q 044205 43 HLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIK 114 (192)
Q Consensus 43 ~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~~~~~~~~ViPVf~~v~ 114 (192)
.+.-.|+.+|.. ..-+.+.+.+.+.+++ ++.|++++++.+.. +.+++.. ++ +..+|++..+.
T Consensus 16 GFrLaGie~~~v----~~~ee~~~~~~~l~~~-digIIlIte~ia~~--i~~~i~~-~~--~~~~P~IveIP 77 (115)
T 3aon_B 16 PFRLFGFDVQHG----TTKTEIRKTIDEMAKN-EYGVIYITEQCANL--VPETIER-YK--GQLTPAIILIP 77 (115)
T ss_dssp GGGGGTCEEECC----CSHHHHHHHHHHHHHT-TEEEEEEEHHHHTT--CHHHHHH-HH--TSSSCEEEEEC
T ss_pred HHHHcCCeEEEe----CCHHHHHHHHHHHHhc-CceEEEEeHHHHHH--hHHHHHH-Hh--CCCCCEEEEEC
Confidence 345678888754 2235566777777777 99999999987763 4455555 22 55667777644
No 38
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=31.05 E-value=1.4e+02 Score=21.15 Aligned_cols=91 Identities=9% Similarity=-0.015 Sum_probs=49.8
Q ss_pred CCCchHHHHHHHHH--------hcceeEEEecCCCCCchh--HHHHHHHHH-hhcCceeeEEeecCCCcccccccCCCch
Q 044205 60 PGDKLFDNINRAIR--------NCKVGVAVFSPTYCQSYF--CLHELALMM-ETKKKVIPIFCDIKPSQLLVIDDGKCSA 128 (192)
Q Consensus 60 ~G~~~~~~i~~aI~--------~S~~~Ivv~S~~y~~S~w--c~~EL~~~~-~~~~~ViPVf~~v~p~~vr~~~~g~~~~ 128 (192)
.|.++...+..+.+ .....|+++|....+..+ ...+....+ +.+-.|+.|-++ ..+
T Consensus 80 g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~i~i~~igvg--~~~----------- 146 (182)
T 1shu_X 80 GETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVL--DFE----------- 146 (182)
T ss_dssp SCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTHHHHHHHHHHHHHHTTCEEEEEECS--SCC-----------
T ss_pred CCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCCCchhHHHHHHHHHhCCCEEEEEeCC--cCC-----------
Confidence 35666667666654 345789999988876544 222233222 233345555443 111
Q ss_pred hHhhhHHHHHHHHHHhcCccccCCCCCHHHHHHHHHHHHHHHh
Q 044205 129 NELRRFSWALEEAKFTVGLTFDSLKGNWSDIVTSASDIIIRSL 171 (192)
Q Consensus 129 ~~~~~W~~aL~~~~~~~G~~~~~~~~~~~~~v~~Iv~~v~~~l 171 (192)
...|..++...|..|... .+ .+-+.++.+.|.+.+
T Consensus 147 ------~~~L~~ia~~~~~~~~~~-~~-~~~L~~~~~~i~~~i 181 (182)
T 1shu_X 147 ------QAQLERIADSKEQVFPVK-GG-FQALKGIINSILAQS 181 (182)
T ss_dssp ------HHHHHHHSSSGGGEEESS-ST-THHHHHHHHHHHHTB
T ss_pred ------HHHHHHHhCCCCceEEcc-CC-HHHHHHHHHHHHhcc
Confidence 255778888777776532 12 234555666665543
No 39
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=30.94 E-value=1.2e+02 Score=26.84 Aligned_cols=63 Identities=10% Similarity=0.061 Sum_probs=40.4
Q ss_pred CCccEEEeccc-c-cCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCC
Q 044205 19 KPCDVFINHRG-I-DTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPT 85 (192)
Q Consensus 19 ~~ydVFISy~~-~-D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~ 85 (192)
..++|+|---+ + +.....+..|.+.|.+.|++|-+|.++ ..+...+..|-..---.++++.++
T Consensus 469 ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~~~----~~~g~k~~~a~~~g~p~~iivG~~ 533 (572)
T 2j3l_A 469 APFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRN----ERAGVKFADADLIGCPIRITVGKK 533 (572)
T ss_dssp SSCSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECSS----CCHHHHHHHHHHHCCSEEEEECGG
T ss_pred CCeEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeCCC----CCHhHHHHHHHhcCCCEEEEEccc
Confidence 45899887544 1 222456889999999999999999753 355556655543333344455443
No 40
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=30.24 E-value=1.6e+02 Score=21.52 Aligned_cols=102 Identities=8% Similarity=-0.051 Sum_probs=55.4
Q ss_pred CCchHHHHHHHHHh-----------cceeEEEecCCCCCchhHHHHHHHHHh-hcCceeeEEeecCCCcccccccCCCch
Q 044205 61 GDKLFDNINRAIRN-----------CKVGVAVFSPTYCQSYFCLHELALMME-TKKKVIPIFCDIKPSQLLVIDDGKCSA 128 (192)
Q Consensus 61 G~~~~~~i~~aI~~-----------S~~~Ivv~S~~y~~S~wc~~EL~~~~~-~~~~ViPVf~~v~p~~vr~~~~g~~~~ 128 (192)
|.++...|..+.+. ....|+++|....+...-..+....++ .+-.|+.|-++-.. .. +..+.
T Consensus 83 ~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~gi~i~~igvg~~~--~~----~~~~~ 156 (200)
T 1v7p_C 83 LTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVIDQCNHDNILRFGIAVLGYL--NR----NALDT 156 (200)
T ss_dssp CCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGGGHHHHHHHHHHTTEEEEEEEECHHH--HH----TTCCC
T ss_pred CCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcccHHHHHHHHHHCCCEEEEEEecccc--cc----cccch
Confidence 36788888887763 245799999888877664555444443 34456666552100 00 00010
Q ss_pred hHhhhHHHHHHHHHHhcC--ccccCCCCCHHHHHHHHHHHHHHHhhhc
Q 044205 129 NELRRFSWALEEAKFTVG--LTFDSLKGNWSDIVTSASDIIIRSLMEI 174 (192)
Q Consensus 129 ~~~~~W~~aL~~~~~~~G--~~~~~~~~~~~~~v~~Iv~~v~~~l~~~ 174 (192)
. .-...|..+|+..| +.+... + ..-+.+|++.+.+++..+
T Consensus 157 ~---~~~~~L~~iA~~~~g~~~~~~~--~-~~~l~~i~~~i~~~ic~~ 198 (200)
T 1v7p_C 157 K---NLIKEIKAIASIPTERYFFNVS--D-EAALLEKAGTLGEQIFSI 198 (200)
T ss_dssp H---HHHHHHHHHSCSSHHHHEEEES--S-SGGGHHHHHHHHHHHHTC
T ss_pred h---hHHHHHHHHhCCccHhcEEEcC--C-HHHHHHHHHHHHhhhcCC
Confidence 0 11345888888775 333321 1 134566677777776544
No 41
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=29.40 E-value=2.1e+02 Score=24.26 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=41.1
Q ss_pred cEEEecccc-cCchhHHHHHHHHHhcCCCeeEE-eCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCch
Q 044205 22 DVFINHRGI-DTKRKVATLLYDHLSRLNLRPFL-DNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSY 90 (192)
Q Consensus 22 dVFISy~~~-D~~~~fv~~L~~~L~~~gi~vf~-D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~ 90 (192)
.|-|-|.+. ..-+..|..+.+.|.+.|+.+-+ .-.++... .+ ..+...+.+|+ .|++-||.|....
T Consensus 267 ~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~-~~-s~i~~~i~~~~-~ivlGspT~~~~~ 334 (410)
T 4dik_A 267 KVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERP-AI-SEILKDIPDSE-ALIFGVSTYEAEI 334 (410)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCC-CH-HHHHHHSTTCS-EEEEEECCTTSSS
T ss_pred ceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCC-CH-HHHHHHHHhCC-eEEEEeCCcCCcC
Confidence 476766432 11145789999999999997643 22233222 22 35666677777 5677899887653
No 42
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=29.01 E-value=1.2e+02 Score=25.39 Aligned_cols=61 Identities=21% Similarity=0.184 Sum_probs=39.7
Q ss_pred CCCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEec
Q 044205 18 IKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFS 83 (192)
Q Consensus 18 ~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S 83 (192)
...++|+|-.-+++. ...+..+.+.|.+.|++|-+|..+ ..+...+..|-..---.++++.
T Consensus 327 ~~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~~~g~p~~iiig 387 (420)
T 1qe0_A 327 EENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYLQ----RKIKGQMKQADRLGAKFTIVIG 387 (420)
T ss_dssp CCCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCSC----CCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEecCC----CCHHHHHHHHHHcCCCEEEEEC
Confidence 456899877544332 356888999999999999998643 3555566554433223445554
No 43
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=28.04 E-value=1.8e+02 Score=26.34 Aligned_cols=63 Identities=19% Similarity=0.123 Sum_probs=40.2
Q ss_pred CCCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCC
Q 044205 18 IKPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPT 85 (192)
Q Consensus 18 ~~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~ 85 (192)
-..++|+|---+++ ....+..|.+.|.+.|++|-+|.++ ..+...+.+|-..---.++|+.++
T Consensus 537 laP~qv~vipi~~~-~~~~a~~v~~~L~~~Gi~v~~D~~~----~~~g~kir~a~~~g~p~~ivvG~~ 599 (642)
T 1qf6_A 537 LAPVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLRN----EKIGFKIREHTLRRVPYMLVCGDK 599 (642)
T ss_dssp TCSSCEEEEESSHH-HHHHHHHHHHHHHTTTCCEEEECCS----SCHHHHHHHHHHTTCSEEEEECTT
T ss_pred cCCceEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEECCC----CCHHHHHHHHHHcCCCEEEEECch
Confidence 34688987654433 3467899999999999999999753 345555554433222244444443
No 44
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=27.37 E-value=68 Score=28.56 Aligned_cols=50 Identities=22% Similarity=0.189 Sum_probs=34.8
Q ss_pred CCCCCccEEEecccc---------cCchhHHHHHHHHHhcCCCeeEEeCCCC-CCCCchH
Q 044205 16 QAIKPCDVFINHRGI---------DTKRKVATLLYDHLSRLNLRPFLDNKNM-KPGDKLF 65 (192)
Q Consensus 16 ~~~~~ydVFISy~~~---------D~~~~fv~~L~~~L~~~gi~vf~D~~~l-~~G~~~~ 65 (192)
+.-..++|.|-=-+. +.-...+..|++.|...||+|-+|+++- .+|..+.
T Consensus 304 ~~laP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Girv~~Ddr~~~s~G~K~~ 363 (519)
T 4hvc_A 304 PRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFN 363 (519)
T ss_dssp TTTCSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHH
T ss_pred ccCCCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
Confidence 455678998754321 2224578899999999999999998763 5665444
No 45
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=27.14 E-value=1.7e+02 Score=26.95 Aligned_cols=62 Identities=10% Similarity=-0.029 Sum_probs=41.0
Q ss_pred CCccEEEeccccc-CchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecC
Q 044205 19 KPCDVFINHRGID-TKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSP 84 (192)
Q Consensus 19 ~~ydVFISy~~~D-~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~ 84 (192)
..++|+|---+++ .-...+..|.+.|.+.|++|.+|.. +..+...+.++=..---.++++.+
T Consensus 558 AP~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~----~~sigkk~k~Ad~~G~p~~IiIG~ 620 (693)
T 2zt5_A 558 APFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDS----SGSIGRRYARTDEIGVAFGVTIDF 620 (693)
T ss_dssp SSCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCC----CSCHHHHHHHHHHTTCCEEEEECH
T ss_pred CCCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECC----CCCHHHHHHHHHHcCCCEEEEEcc
Confidence 4689988765443 2356799999999999999999874 335555665544333334445543
No 46
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=26.70 E-value=34 Score=23.56 Aligned_cols=18 Identities=11% Similarity=0.135 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHhcCCCee
Q 044205 34 RKVATLLYDHLSRLNLRP 51 (192)
Q Consensus 34 ~~fv~~L~~~L~~~gi~v 51 (192)
..|+..|...|..+||+|
T Consensus 9 q~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKV 26 (94)
T ss_pred hHHHHHHHHHHHHcCeee
Confidence 479999999999999998
No 47
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=26.22 E-value=1.3e+02 Score=21.49 Aligned_cols=91 Identities=8% Similarity=0.004 Sum_probs=48.9
Q ss_pred CCCchHHHHHHHHHh----------cceeEEEecCCCCCchhHH--HHHHHHH-hhcCceeeEEeecCCCcccccccCCC
Q 044205 60 PGDKLFDNINRAIRN----------CKVGVAVFSPTYCQSYFCL--HELALMM-ETKKKVIPIFCDIKPSQLLVIDDGKC 126 (192)
Q Consensus 60 ~G~~~~~~i~~aI~~----------S~~~Ivv~S~~y~~S~wc~--~EL~~~~-~~~~~ViPVf~~v~p~~vr~~~~g~~ 126 (192)
.|.++...|..+.+. ....|+++|....+..++. .+....+ +.+-.|+.|-++ +..
T Consensus 81 g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~igvg----~~~------- 149 (185)
T 3n2n_F 81 GDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYAVGVK----DFN------- 149 (185)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHTTEEEEEEECS----SCC-------
T ss_pred CCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCcccchHHHHHHHHHCCCEEEEEEec----cCC-------
Confidence 456677777776652 2368999999888776652 3333333 233345555443 110
Q ss_pred chhHhhhHHHHHHHHHHhcCccccCCCCCHHHHHHHHHHHHHHHh
Q 044205 127 SANELRRFSWALEEAKFTVGLTFDSLKGNWSDIVTSASDIIIRSL 171 (192)
Q Consensus 127 ~~~~~~~W~~aL~~~~~~~G~~~~~~~~~~~~~v~~Iv~~v~~~l 171 (192)
...|..+|...|..|.- .+..+-+..+++.|.+.+
T Consensus 150 --------~~~L~~iA~~~~~~~~~--~~~~~~L~~~~~~i~~~i 184 (185)
T 3n2n_F 150 --------ETQLARIADSKDHVFPV--NDGFQALQGIIHSILKKS 184 (185)
T ss_dssp --------HHHHTTTSSSGGGEEEH--HHHHHHHHHHHHHHHHTB
T ss_pred --------HHHHHHHhCCCCCeEEe--ccHHHHHHHHHHHHHHhc
Confidence 24455566555555532 121344566666665543
No 48
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=25.94 E-value=1.8e+02 Score=22.87 Aligned_cols=54 Identities=9% Similarity=-0.034 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhcCCCeeE-EeCCCCC--CCC----chHHHHHHHHHhcceeEEEecCCCCCc
Q 044205 35 KVATLLYDHLSRLNLRPF-LDNKNMK--PGD----KLFDNINRAIRNCKVGVAVFSPTYCQS 89 (192)
Q Consensus 35 ~fv~~L~~~L~~~gi~vf-~D~~~l~--~G~----~~~~~i~~aI~~S~~~Ivv~S~~y~~S 89 (192)
..+..+.+.++..|+.+- +|-.++. ..+ .-...+.+.|.+++. ||+.||-|..|
T Consensus 52 ~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~-iI~~sP~Yn~s 112 (247)
T 2q62_A 52 LLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEG-QVWVSPERHGA 112 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSE-EEEEEECSSSS
T ss_pred HHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCE-EEEEeCCCCCC
Confidence 456677777777888664 3433322 111 113567788999995 56678998876
No 49
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=25.79 E-value=72 Score=28.94 Aligned_cols=61 Identities=25% Similarity=0.192 Sum_probs=38.8
Q ss_pred CCccEEEecccccCchhHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEec
Q 044205 19 KPCDVFINHRGIDTKRKVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFS 83 (192)
Q Consensus 19 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S 83 (192)
..++|+|---+.+.....+..+.+.|.+.|++|.+|.++ ..+...+..|-..---.++|+.
T Consensus 544 ap~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~----~~~g~k~~~a~~~g~p~~iivG 604 (645)
T 1nyr_A 544 APKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRN----EKMGYKIREAQMQKIPYQIVVG 604 (645)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCSS----CCHHHHHHHHHHHTCSEEEEEC
T ss_pred CCceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEECCC----CCHHHHHHHHHhcCCCEEEEEc
Confidence 457888765431223467899999999999999999753 4555566554333222444443
No 50
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=25.45 E-value=1.6e+02 Score=19.84 Aligned_cols=46 Identities=4% Similarity=-0.018 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHhcCCCee-EEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCc
Q 044205 34 RKVATLLYDHLSRLNLRP-FLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQS 89 (192)
Q Consensus 34 ~~fv~~L~~~L~~~gi~v-f~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S 89 (192)
+.++..+.+.|...|+.+ .+|-.+.. ...+.+++ .|++.||.|..+
T Consensus 14 ~~~a~~i~~~l~~~g~~v~~~~~~~~~---------~~~l~~~d-~vi~g~p~y~~~ 60 (137)
T 2fz5_A 14 EAMANEIEAAVKAAGADVESVRFEDTN---------VDDVASKD-VILLGCPAMGSE 60 (137)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTSCC---------HHHHHTCS-EEEEECCCBTTT
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcccCC---------HHHHhcCC-EEEEEccccCCC
Confidence 468999999999888876 33433221 12356666 566778888654
No 51
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=25.34 E-value=1.4e+02 Score=27.64 Aligned_cols=69 Identities=17% Similarity=0.154 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCCCchhHHHHHHHHHhhcCceeeEEeecC
Q 044205 35 KVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYCQSYFCLHELALMMETKKKVIPIFCDIK 114 (192)
Q Consensus 35 ~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~~~~~~~~ViPVf~~v~ 114 (192)
..+..|.++|++.|+.|..-. +..+.+.-.-.++++..+|+|-+- ...++...++....=+|||+-.+
T Consensus 17 ~~i~~L~~~Le~~g~~V~~a~-------s~~Da~~~i~~~~~i~avIld~d~-----~~~~ll~~Ir~~~~~iPVFl~~~ 84 (715)
T 3n75_A 17 EPIRELHRALERLNFQIVYPN-------DRDDLLKLIENNARLCGVIFDWDK-----YNLELCEEISKMNENLPLYAFAN 84 (715)
T ss_dssp HHHHHHHHHHHHTTCEEECCS-------SHHHHHHHHHHCTTEEEEEEEHHH-----HHHHHHHHHHHHCTTCEEEEECC
T ss_pred HHHHHHHHHHHHCCcEEEEeC-------CHHHHHHHHHhCCCceEEEEeccc-----cHHHHHHHHHHhCCCCCEEEEec
Confidence 358889999999999986543 233444444466789999998432 13466666666677889998554
Q ss_pred C
Q 044205 115 P 115 (192)
Q Consensus 115 p 115 (192)
.
T Consensus 85 ~ 85 (715)
T 3n75_A 85 T 85 (715)
T ss_dssp T
T ss_pred C
Confidence 4
No 52
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=24.18 E-value=18 Score=24.54 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=13.5
Q ss_pred EecccccCchhHHHHHHHHHhcCC
Q 044205 25 INHRGIDTKRKVATLLYDHLSRLN 48 (192)
Q Consensus 25 ISy~~~D~~~~fv~~L~~~L~~~g 48 (192)
.|||+.+..-.|+..|.+.|++.|
T Consensus 24 ~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 24 YSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp CCEEETTTEEHHHHHHHHHHHHHT
T ss_pred EeeecCCCCCeeHHHHHHHHHHhC
Confidence 344444334457777777776543
No 53
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=24.02 E-value=64 Score=28.38 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=25.7
Q ss_pred CCccEEEeccc--ccCchhHHHHHHHHHhcCCCeeE--EeCC
Q 044205 19 KPCDVFINHRG--IDTKRKVATLLYDHLSRLNLRPF--LDNK 56 (192)
Q Consensus 19 ~~ydVFISy~~--~D~~~~fv~~L~~~L~~~gi~vf--~D~~ 56 (192)
..|+|=|--.. .|.-..++..|++.|.+.||+|. +|++
T Consensus 347 AP~qV~Iii~~~~~e~~~~~A~~L~~~Lr~~GIrV~~d~Ddr 388 (459)
T 3ikl_A 347 APIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLET 388 (459)
T ss_dssp CSCCEEEEESSCCSTTHHHHHHHHHHHHHHTSCCEECGGGSS
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCCeEEEeecCC
Confidence 34555433221 23345689999999999999999 6664
No 54
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=23.64 E-value=22 Score=23.79 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=16.9
Q ss_pred EEecccccCchhHHHHHHHHHhcCC
Q 044205 24 FINHRGIDTKRKVATLLYDHLSRLN 48 (192)
Q Consensus 24 FISy~~~D~~~~fv~~L~~~L~~~g 48 (192)
|.|||+....-.|+..|.+.|++.+
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhC
Confidence 4566655545568888888887654
No 55
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=23.31 E-value=17 Score=24.70 Aligned_cols=30 Identities=10% Similarity=0.011 Sum_probs=16.7
Q ss_pred CCCccEEEecc---------cccCchhHHHHHHHHHhcC
Q 044205 18 IKPCDVFINHR---------GIDTKRKVATLLYDHLSRL 47 (192)
Q Consensus 18 ~~~ydVFISy~---------~~D~~~~fv~~L~~~L~~~ 47 (192)
+..-|.+++|+ +.+..-.|+..|.+.|++.
T Consensus 10 P~~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~ 48 (95)
T 1qtn_B 10 PDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRER 48 (95)
T ss_dssp CTTCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHh
Confidence 33556666665 3333334677777777653
No 56
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=22.36 E-value=65 Score=24.08 Aligned_cols=111 Identities=8% Similarity=0.016 Sum_probs=54.8
Q ss_pred CchHHHHHHHHHh-----------cceeEEEecCCCCCchhHHHHHHHHH-hhcCceeeEEeecCCCcccccccCCCchh
Q 044205 62 DKLFDNINRAIRN-----------CKVGVAVFSPTYCQSYFCLHELALMM-ETKKKVIPIFCDIKPSQLLVIDDGKCSAN 129 (192)
Q Consensus 62 ~~~~~~i~~aI~~-----------S~~~Ivv~S~~y~~S~wc~~EL~~~~-~~~~~ViPVf~~v~p~~vr~~~~g~~~~~ 129 (192)
.++...|..+.+. ....|+++|....+...-..+....+ +.+-.|+.|-++..... |.+...
T Consensus 85 T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~~~gi~i~~igig~~~~~------~~~~~~ 158 (213)
T 1pt6_A 85 TMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNHRLKKVIQDCEDENIQRFSIAILGSYNR------GNLSTE 158 (213)
T ss_dssp CCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSHHHHHHHHHHHHTTEEEEEEEECHHHHH------TTCCCH
T ss_pred ccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEecccccc------ccccch
Confidence 5777788877653 35679999988776553233333333 33445666665421100 111111
Q ss_pred HhhhHHHHHHHHHHhc--CccccCCCCCHHHHHHHHHHHHHHHhhhcCCcchhhhhh
Q 044205 130 ELRRFSWALEEAKFTV--GLTFDSLKGNWSDIVTSASDIIIRSLMEIDYKEQRHWRR 184 (192)
Q Consensus 130 ~~~~W~~aL~~~~~~~--G~~~~~~~~~~~~~v~~Iv~~v~~~l~~~~~~~vg~~~r 184 (192)
+-...|..+|+.+ |..+.- .+. +-+.+|++.+.+++..+.....+...|
T Consensus 159 ---~~~~~L~~iA~~~~~g~~~~~--~~~-~~l~~i~~~l~~~i~~~~~~~~~~~~~ 209 (213)
T 1pt6_A 159 ---KFVEEIKSIASEPTEKHFFNV--SDE-LALVTIVKTLGERIFALEATAVDSSGR 209 (213)
T ss_dssp ---HHHHHHHHHSCSSHHHHEEEE--SSG-GGGGGGHHHHHHHHTC-----------
T ss_pred ---hhHHHHHHHhCCCchhcEEEe--CCH-HHHHHHHHHHHHhheeccceeeCCCCc
Confidence 1236788888763 444432 122 345677778888887776665555444
No 57
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=21.66 E-value=32 Score=24.60 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhcCCCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEEecCCCC
Q 044205 35 KVATLLYDHLSRLNLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAVFSPTYC 87 (192)
Q Consensus 35 ~fv~~L~~~L~~~gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv~S~~y~ 87 (192)
.-...|..+.+.+|+-+|.|.+ .+|+.+...|.+.+.+++ ...+...+.
T Consensus 39 ~~l~~I~~~~~~r~VIi~TD~D--~~GekIRk~i~~~lp~~~--hafi~r~~~ 87 (119)
T 2fcj_A 39 ARLEELADELEGYDVYLLADAD--EAGEKLRRQFRRMFPEAE--HLYIDRAYR 87 (119)
T ss_dssp HHHHHHHHHTTTSEEEEECCSS--HHHHHHHHHHHHHCTTSE--EECCCTTTC
T ss_pred HHHHHHHHHhcCCCEEEEECCC--ccHHHHHHHHHHHCCCCc--EEeccCCcc
Confidence 3355667777788888888876 678888888888887774 345555554
No 58
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=21.32 E-value=50 Score=23.86 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHhcCCCeeEE
Q 044205 34 RKVATLLYDHLSRLNLRPFL 53 (192)
Q Consensus 34 ~~fv~~L~~~L~~~gi~vf~ 53 (192)
..|++.|+..|+++|++|-.
T Consensus 8 ~~fi~~Lk~~LK~rGvkV~~ 27 (124)
T 2lpy_A 8 ERYVEQLKQALKTRGVKVKY 27 (124)
T ss_dssp HHHHHHHHHHHHTTTCCCCH
T ss_pred HHHHHHHHHHHHHCCeeecH
Confidence 47999999999999998743
No 59
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=21.31 E-value=1.1e+02 Score=26.53 Aligned_cols=62 Identities=18% Similarity=0.159 Sum_probs=38.6
Q ss_pred CCCccEEEeccccc--CchhHHHHHHHHHhcC--------------CCeeEEeCCCCCCCCchHHHHHHHHHhcceeEEE
Q 044205 18 IKPCDVFINHRGID--TKRKVATLLYDHLSRL--------------NLRPFLDNKNMKPGDKLFDNINRAIRNCKVGVAV 81 (192)
Q Consensus 18 ~~~ydVFISy~~~D--~~~~fv~~L~~~L~~~--------------gi~vf~D~~~l~~G~~~~~~i~~aI~~S~~~Ivv 81 (192)
...++|+|---+++ .-...+..|.+.|... |++|-+|.++ ..+...+.+|-..---.+++
T Consensus 343 laP~qv~Vipi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi~v~~D~~~----~~lg~k~r~Ad~~g~p~~iv 418 (460)
T 3uh0_A 343 LNPYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDIRN----EPVGYRIKSAILKNYSYLII 418 (460)
T ss_dssp GCSCCEEEEESSTTCHHHHHHHHHHHHHHHCCCCTTSSCCCCTTCCCCCEEECCCS----SCHHHHHHHHHHHTCSEEEE
T ss_pred CCCceEEEEEecCCcHHHHHHHHHHHHHHHcCcccccccccccCCCCEEEEEECCC----CCHHHHHHHHHHcCCCEEEE
Confidence 45688877643333 0235789999999988 9999999864 34445555544332233444
Q ss_pred ec
Q 044205 82 FS 83 (192)
Q Consensus 82 ~S 83 (192)
+.
T Consensus 419 vG 420 (460)
T 3uh0_A 419 VG 420 (460)
T ss_dssp EC
T ss_pred Ec
Confidence 43
No 60
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=21.28 E-value=23 Score=24.43 Aligned_cols=31 Identities=10% Similarity=-0.021 Sum_probs=17.3
Q ss_pred CCCccEEEecc---------cccCchhHHHHHHHHHhcCC
Q 044205 18 IKPCDVFINHR---------GIDTKRKVATLLYDHLSRLN 48 (192)
Q Consensus 18 ~~~ydVFISy~---------~~D~~~~fv~~L~~~L~~~g 48 (192)
+..-|.+++|+ +....-.|+..|.+.|++.|
T Consensus 14 P~~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 14 PVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp CTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 34456666665 33333346777777776543
No 61
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=21.04 E-value=1.3e+02 Score=24.46 Aligned_cols=54 Identities=7% Similarity=-0.060 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhcCCCeeE-EeCCCCC--CCC-----chHHHHHHHHHhcceeEEEecCCCCCc
Q 044205 35 KVATLLYDHLSRLNLRPF-LDNKNMK--PGD-----KLFDNINRAIRNCKVGVAVFSPTYCQS 89 (192)
Q Consensus 35 ~fv~~L~~~L~~~gi~vf-~D~~~l~--~G~-----~~~~~i~~aI~~S~~~Ivv~S~~y~~S 89 (192)
..+..+.+.|+..|..+- +|-.++. .++ .-...+.+.|..++. ||+.||-|..|
T Consensus 76 ~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADg-iV~aSP~Yn~s 137 (279)
T 2fzv_A 76 LAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEG-QVWCSPERHGQ 137 (279)
T ss_dssp HHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSE-EEEEEEEETTE
T ss_pred HHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCe-EEEEcCccccC
Confidence 356667777777888663 3444432 111 124567788999995 56678988866
No 62
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=20.83 E-value=24 Score=24.44 Aligned_cols=24 Identities=13% Similarity=-0.036 Sum_probs=13.8
Q ss_pred EecccccCchhHHHHHHHHHhcCC
Q 044205 25 INHRGIDTKRKVATLLYDHLSRLN 48 (192)
Q Consensus 25 ISy~~~D~~~~fv~~L~~~L~~~g 48 (192)
+|||+....-.|+..|.+.|++.+
T Consensus 28 ~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 28 AAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp CCEEETTTEEHHHHHHHHHHHHHT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHC
Confidence 344444434457777777776543
Done!