BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044206
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%)
Query: 46 PEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLT 105
P++ S P++G L L H K+ +YGPI+ ++MG ++V + ++AKE L
Sbjct: 10 PKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLI 69
Query: 106 THDKVFASRPKTLAMEILGYNFSMFGFSPYGSYWREIRKIA 146
K F+ RP+ ++I N F+ G++W+ R++A
Sbjct: 70 KKGKDFSGRPQMATLDIASNNRKGIAFADSGAHWQLHRRLA 110
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 20/223 (8%)
Query: 34 LSKYTSKKKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALV 93
++K TS K + P WP+IGH+ LG + H L +M+ +YG + +I++G +V
Sbjct: 1 MAKKTSSKGLKNPPGPWGWPLIGHMLTLG--KNPHLALSRMSQQYGDVLQIRIGSTPVVV 58
Query: 94 VSNWEMAKECLTTHDKVFASRPKTLAMEILGYNFSMFGFSP-YGSYWREIRKIA-----T 147
+S + ++ L F RP ++ SM FSP G W R++A +
Sbjct: 59 LSGLDTIRQALVRQGDDFKGRPDLYTFTLISNGQSM-SFSPDSGPVWAARRRLAQNGLKS 117
Query: 148 LELLSNHRLGKLRHVREY---ELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDTIRNVV 204
+ S+ ++ E+ E + + L EL N R+ ++ NV+
Sbjct: 118 FSIASDPASSTSCYLEEHVSKEAEVLISTLQELMAGPGHFNPY------RYVVVSVTNVI 171
Query: 205 LRMIVGKGCDSVDGE--EWIELLTRFSEMSGKFVVSDALPFLR 245
+ G+ D E + L F E+ G +D +P LR
Sbjct: 172 CAICFGRRYDHNHQELLSLVNLNNNFGEVVGSGNPADFIPILR 214
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 16/218 (7%)
Query: 34 LSKYTSKKKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALV 93
++K TS K + P +WP+IG+ +G + +H ++A YG +F+I++G +V
Sbjct: 1 MAKKTSSKGK--PPGPFAWPLIGNAAAVG--QAAHLSFARLARRYGDVFQIRLGSCPIVV 56
Query: 94 VSNWEMAKECLTTHDKVFASRPKTLAMEILGYNFSMFGFSPYGSYWREIRKIATLELLSN 153
++ + L FA RP + ++ SM F Y +W+ +++ A ++ N
Sbjct: 57 LNGERAIHQALVQQGSAFADRPSFASFRVVSGGRSM-AFGHYSEHWK-VQRRAAHSMMRN 114
Query: 154 H--RLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDTIRNVVLRMIVGK 211
R + R V E + + ++L L + + L + + + NV+ V
Sbjct: 115 FFTRQPRSRQVLEGHVLSEARELVALLVRGSADGAFL--DPRPLTVVAVANVM--SAVCF 170
Query: 212 GCD-SVDGEEWIELLTR---FSEMSGKFVVSDALPFLR 245
GC S D E+ ELL+ F G + D +P+L+
Sbjct: 171 GCRYSHDDPEFRELLSHNEEFGRTVGAGSLVDVMPWLQ 208
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 40 KKKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEM 99
K + PE G WP++GH+ LG + H L +M+ YG + +I++G LV+S +
Sbjct: 13 KGLKSPPEPWG-WPLLGHVLTLG--KNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDT 69
Query: 100 AKECLTTHDKVFASRPKTLAMEILGYNFSMFGFSPYGSYWREIRKIA 146
++ L F RP ++ S+ + G W R++A
Sbjct: 70 IRQALVRQGDDFKGRPDLYTSTLITDGQSLTFSTDSGPVWAARRRLA 116
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 20/193 (10%)
Query: 60 LLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLA 119
L E H + K + YG IF + +G +V++ +++ KECL ++FA RP
Sbjct: 29 LAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRP---C 85
Query: 120 MEILGYNFSMFGF--SPYGSYWREIRKIATLELLSNHRLGKLRHV--REYELKTSLKDLY 175
+ + M G S YG W + R++A + R+ + ++ + +
Sbjct: 86 LPLFMKMTKMGGLLNSRYGRGWVDHRRLA---------VNSFRYFGYGQKSFESKILEET 136
Query: 176 ELWDKNKSTNKMLLVEMKRWFTDTIRNVVLRMIVGK--GCDSVDGEEWIELLTRFSEM-- 231
+ ++ T K + K+ T+ + N+ +I G+ + D + IEL + E+
Sbjct: 137 KFFNDAIETYKGRPFDFKQLITNAVSNITNLIIFGERFTYEDTDFQHMIELFSENVELAA 196
Query: 232 SGKFVVSDALPFL 244
S + +A P++
Sbjct: 197 SASVFLYNAFPWI 209
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 20/193 (10%)
Query: 60 LLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLA 119
L E H + K + YG IF + +G +V++ +++ KECL ++FA RP
Sbjct: 29 LAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRP---C 85
Query: 120 MEILGYNFSMFGF--SPYGSYWREIRKIATLELLSNHRLGKLRHV--REYELKTSLKDLY 175
+ + M G S YG W + R++A + R+ + ++ + +
Sbjct: 86 LPLFMKMTKMGGLLNSRYGRGWVDHRRLA---------VNSFRYFGYGQKSFESKILEET 136
Query: 176 ELWDKNKSTNKMLLVEMKRWFTDTIRNVVLRMIVGK--GCDSVDGEEWIELLTRFSEM-- 231
+ ++ T K + K+ T+ + N+ +I G+ + D + IEL + E+
Sbjct: 137 KFFNDAIETYKGRPFDFKQLITNAVSNITNLIIFGERFTYEDTDFQHMIELFSENVELAA 196
Query: 232 SGKFVVSDALPFL 244
S + +A P++
Sbjct: 197 SASVFLYNAFPWI 209
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 34 LSKYTSKKKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALV 93
++K TS + + P PVIG++ +G + S L ++ YGP+F + G+ +V
Sbjct: 1 MAKKTSSGRGKLPPGPTPLPVIGNILQIGIKDISKS-LTNLSKVYGPVFTLYFGLKPIVV 59
Query: 94 VSNWEMAKECLTTHDKVFASRPKTLAMEILGYNFSMFGFSPYGSYWREIRKIATLELLSN 153
+ +E KE L + F+ R E F + FS G W+EIR+ + L L N
Sbjct: 60 LHGYEAVKEALIDLGEEFSGRGIFPLAERANRGFGIV-FS-NGKKWKEIRRFS-LMTLRN 116
Query: 154 HRLGK 158
+GK
Sbjct: 117 FGMGK 121
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 6/125 (4%)
Query: 34 LSKYTSKKKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALV 93
++K TS K R P PVIG++ +G + S L ++ YGP+F + G+ +V
Sbjct: 1 MAKKTSSKGR--PPGPTPLPVIGNILQIGIKDISKS-LTNLSKVYGPVFTLYFGLKPIVV 57
Query: 94 VSNWEMAKECLTTHDKVFASRPKTLAMEILGYNFSMFGFSPYGSYWREIRKIATLELLSN 153
+ +E KE L + F+ R E F + FS G W+EIR+ + L L N
Sbjct: 58 LHGYEAVKEALIDLGEEFSGRGIFPLAERANRGFGIV-FS-NGKKWKEIRRFS-LMTLRN 114
Query: 154 HRLGK 158
+GK
Sbjct: 115 FGMGK 119
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 69 WVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAMEILGYNFS 128
+ ++ +G +F +++ +V++ +E L TH + A RP +ILG+
Sbjct: 34 YCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPR 93
Query: 129 MFG--FSPYGSYWREIRKIATLELLSNHRLGK 158
G + YG WRE R+ ++ L N LGK
Sbjct: 94 SQGVFLARYGPAWREQRRF-SVSTLRNLGLGK 124
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 69 WVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAMEILGYNFS 128
+ ++ +G +F +++ +V++ +E L TH + A RP +ILG+
Sbjct: 34 YCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPR 93
Query: 129 MFG--FSPYGSYWREIRKIATLELLSNHRLGK 158
G + YG WRE R+ ++ L N LGK
Sbjct: 94 SQGVFLARYGPAWREQRRF-SVSTLRNLGLGK 124
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 20/196 (10%)
Query: 34 LSKYTSKKKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALV 93
++K TS K + P P IG+ +L E + L K+++ YGP+F I +G R +V
Sbjct: 1 MAKKTSSKGK-LPPGPTPLPFIGN-YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVV 58
Query: 94 VSNWEMAKECLTTHDKVFASRPKTLAMEIL--GYNFSMFGFSPYGSYWREIRK--IATLE 149
+ + KE L + F+ R + + L GY + FS G +++R+ IATL
Sbjct: 59 LCGHDAVKEALVDQAEEFSGRGEQATFDWLFKGYGVA---FS-NGERAKQLRRFSIATLR 114
Query: 150 LLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDTIRNVVLRMIV 209
+ G ++E + L D + T+ ++ + + T+ NV+ ++
Sbjct: 115 GFGVGKRGIEERIQE--------EAGFLIDALRGTHGA-NIDPTFFLSRTVSNVISSIVF 165
Query: 210 GKGCDSVDGEEWIELL 225
G D D +E++ LL
Sbjct: 166 GDRFDYED-KEFLSLL 180
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 88/199 (44%), Gaps = 16/199 (8%)
Query: 34 LSKYTSKKKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALV 93
++K TS K + P P+IG++ + + + YGP+F + G+N +V
Sbjct: 1 MAKKTSSKGK-LPPGPTPLPIIGNMLQIDVKDICKS-FTNFSKVYGPVFTVYFGMNPIVV 58
Query: 94 VSNWEMAKECLTTHDKVFASRPKTLAMEILGYNFSMFGFSPYGSYWREIRKIATLELLSN 153
+E KE L + + F+ R + + + + S G W+EIR+ + L L N
Sbjct: 59 FHGYEAVKEALIDNGEEFSGRGNSPISQRITKGLGI--ISSNGKRWKEIRRFS-LTTLRN 115
Query: 154 HRLGKLRHVREYELKTSLKDLYELWDKNKST--NKMLLVEMKRWFTDTIRNVVLRMIVGK 211
+GK R + E ++ L E K K++ + ++ NV+ ++ K
Sbjct: 116 FGMGK-RSI-EDRVQEEAHCLVEELRKTKASPCDPTFILGCAPC------NVICSVVFQK 167
Query: 212 GCDSVDGEEWIELLTRFSE 230
D D + ++ L+ RF+E
Sbjct: 168 RFDYKD-QNFLTLMKRFNE 185
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 16/194 (8%)
Query: 34 LSKYTSKKKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALV 93
++K TS K + P P IG+ +L E + L K+++ YGP+F I +G R +V
Sbjct: 1 MAKKTSSKGK-LPPGPTPLPFIGN-YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVV 58
Query: 94 VSNWEMAKECLTTHDKVFASRPKTLAMEILGYNFSMFG--FSPYGSYWREIRKIATLELL 151
+ + +E L + F+ R + + + F +G FS G +++R+ ++ L
Sbjct: 59 LCGHDAVREALVDQAEEFSGRGEQATFD---WVFKGYGVVFS-NGERAKQLRRF-SIATL 113
Query: 152 SNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDTIRNVVLRMIVGK 211
+ +GK R + E ++ L + N ++ + + T+ NV+ ++ G
Sbjct: 114 RDFGVGK-RGIEE-RIQEEAGFLIDALRGTGGAN----IDPTFFLSRTVSNVISSIVFGD 167
Query: 212 GCDSVDGEEWIELL 225
D D +E++ LL
Sbjct: 168 RFDYKD-KEFLSLL 180
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 16/194 (8%)
Query: 34 LSKYTSKKKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALV 93
++K TS K + P P IG+ +L E + L K+++ YGP+F I +G R +V
Sbjct: 1 MAKKTSSKGK-LPPGPTPLPFIGN-YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVV 58
Query: 94 VSNWEMAKECLTTHDKVFASRPKTLAMEILGYNFSMFG--FSPYGSYWREIRKIATLELL 151
+ + +E L + F+ R + + + F +G FS G +++R+ + + L
Sbjct: 59 LCGHDAVREALVDQAEEFSGRGEQATFD---WVFKGYGVVFS-NGERAKQLRRFS-IATL 113
Query: 152 SNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDTIRNVVLRMIVGK 211
+ +GK R + E ++ L + N ++ + + T+ NV+ ++ G
Sbjct: 114 RDFGVGK-RGIEE-RIQEEAGFLIDALRGTGGAN----IDPTFFLSRTVSNVISSIVFGD 167
Query: 212 GCDSVDGEEWIELL 225
D D +E++ LL
Sbjct: 168 RFDYKD-KEFLSLL 180
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 20/196 (10%)
Query: 34 LSKYTSKKKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALV 93
++K TS K + P P IG+ +L E + L K+++ YGP+F I +G R +V
Sbjct: 1 MAKKTSSKGK-LPPGPTPLPFIGN-YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVV 58
Query: 94 VSNWEMAKECLTTHDKVFASRPKTLAMEILGYNFSMFG--FSPYGSYWREIRK--IATLE 149
+ + +E L + F+ R + + + F +G FS G +++R+ IATL
Sbjct: 59 LCGHDAVREALVDQAEEFSGRGEQATFD---WVFKGYGVVFS-NGERAKQLRRFSIATLR 114
Query: 150 LLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDTIRNVVLRMIV 209
+ G ++E + L D + T ++ + + T+ NV+ ++
Sbjct: 115 DFGVGKRGIEERIQE--------EAGFLIDALRGTGGA-NIDPTFFLSRTVSNVISSIVF 165
Query: 210 GKGCDSVDGEEWIELL 225
G D D +E++ LL
Sbjct: 166 GDRFDYKD-KEFLSLL 180
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 16/194 (8%)
Query: 34 LSKYTSKKKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALV 93
++K TS K + P P IG+ +L E + L K+++ YGP+F I +G R +V
Sbjct: 1 MAKKTSSKGK-LPPGPTPLPFIGN-YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVV 58
Query: 94 VSNWEMAKECLTTHDKVFASRPKTLAMEILGYNFSMFG--FSPYGSYWREIRKIATLELL 151
+ + +E L + F+ R + + + F +G FS G +++R+ + + L
Sbjct: 59 LCGHDAVREALVDQAEEFSGRGEQATFD---WVFKGYGVVFS-NGERAKQLRRFS-IATL 113
Query: 152 SNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDTIRNVVLRMIVGK 211
+ +GK R + E ++ L + N ++ + + T+ NV+ ++ G
Sbjct: 114 RDFGVGK-RGIEE-RIQEEAGFLIDALRGTGGAN----IDPTFFLSRTVSNVISSIVFGD 167
Query: 212 GCDSVDGEEWIELL 225
D D +E++ LL
Sbjct: 168 RFDYKD-KEFLSLL 180
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 16/194 (8%)
Query: 34 LSKYTSKKKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALV 93
++K TS K + P P IG+ +L E + L K+++ YGP+F I +G R +V
Sbjct: 1 MAKKTSSKGK-LPPGPTPLPFIGN-YLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVV 58
Query: 94 VSNWEMAKECLTTHDKVFASRPKTLAMEILGYNFSMFG--FSPYGSYWREIRKIATLELL 151
+ + +E L + F+ R + + + F +G FS G +++R+ + + L
Sbjct: 59 LCGHDAVREALVDQAEEFSGRGEQATFD---WVFKGYGVVFS-NGERAKQLRRFS-IATL 113
Query: 152 SNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDTIRNVVLRMIVGK 211
+ +GK R + E ++ L + N ++ + + T+ NV+ ++ G
Sbjct: 114 RDFGVGK-RGIEE-RIQEEAGFLIDALRGTGGAN----IDPTFFLSRTVSNVISSIVFGD 167
Query: 212 GCDSVDGEEWIELL 225
D D +E++ LL
Sbjct: 168 RFDYKD-KEFLSLL 180
>pdb|3QZ1|A Chain A, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|B Chain B, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|C Chain C, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|D Chain D, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
Length = 496
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 54 VIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFAS 113
V G LHLL P H L + + GP++++++G+ +V+++ +E + FA
Sbjct: 34 VPGFLHLLQPNLPIH--LLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAG 91
Query: 114 RPKTLAMEILGYNFSMFGFSPYGSYWREIRKIATLELLSNHR 155
RP+ + +++ Y W+ +K+ LL R
Sbjct: 92 RPQIPSYKLVSQRCQDISLGDYSLLWKAHKKLTRSALLLGTR 133
>pdb|3U0H|A Chain A, The Structure Of A Xylose Isomerase Domain Protein From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius.
pdb|3U0H|B Chain B, The Structure Of A Xylose Isomerase Domain Protein From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Length = 281
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 140 REIRKIATLELLSNHRLG-------KLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEM 192
R IR++A L R+G LRH R Y SL DL W+ + N LV+
Sbjct: 122 RRIRQVAVELLPLGXRVGLEYVGPHHLRH-RRYPFVQSLADLKTFWEAIGAPNVGALVDS 180
Query: 193 KRWFT 197
W+T
Sbjct: 181 YHWYT 185
>pdb|3K9V|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9V|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9Y|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
pdb|3K9Y|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
Length = 482
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 51 SWPVIGHLHLL---GGPEPSHWVLGKMADEYGPIFKIKMG 87
+WP++G L + GG + H L + +YG IF++K+G
Sbjct: 31 NWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLG 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,932,919
Number of Sequences: 62578
Number of extensions: 266751
Number of successful extensions: 623
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 602
Number of HSP's gapped (non-prelim): 24
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)