Query 044206
Match_columns 245
No_of_seqs 157 out of 1825
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 21:49:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swz_A Steroid 17-alpha-hydrox 100.0 2.8E-28 9.6E-33 202.3 18.8 192 43-244 8-203 (494)
2 3pm0_A Cypib1, cytochrome P450 100.0 2.1E-27 7.1E-32 197.6 16.1 193 41-244 7-207 (507)
3 3s79_A Cytochrome P450 19A1; o 99.9 3.2E-27 1.1E-31 196.3 13.1 166 39-214 41-209 (503)
4 3nxu_A Cytochrome P450 3A4; al 99.9 6.5E-27 2.2E-31 193.6 11.8 164 38-215 9-173 (485)
5 3qz1_A Steroid 21-hydroxylase; 99.9 1.8E-27 6.3E-32 197.5 8.4 156 39-211 25-180 (496)
6 2hi4_A Cytochrome P450 1A2; CY 99.9 4E-26 1.4E-30 189.4 16.3 193 41-244 14-218 (495)
7 3k9v_A 1,25-dihydroxyvitamin D 99.9 7.4E-26 2.5E-30 187.1 17.1 190 35-232 16-217 (482)
8 3tbg_A Cytochrome P450 2D6; mo 99.9 2.3E-24 8E-29 178.0 19.3 166 41-217 8-177 (479)
9 3czh_A Cytochrome P450 2R1; vi 99.9 7.8E-25 2.7E-29 181.1 16.4 177 42-230 11-193 (481)
10 3gw9_A Sterol 14alpha-demethyl 99.9 1.2E-25 4.2E-30 184.2 11.4 186 42-244 2-191 (450)
11 3e6i_A CYPIIE1, P450-J, cytoch 99.9 2.3E-24 7.8E-29 178.0 18.9 163 41-217 8-172 (476)
12 2fdv_A Cytochrome P450 2A6; CY 99.9 1.3E-24 4.5E-29 179.5 16.9 164 41-217 8-173 (476)
13 3ld6_A Lanosterol 14-alpha dem 99.9 6.7E-26 2.3E-30 186.5 9.0 178 41-232 9-186 (461)
14 1po5_A Cytochrome P450 2B4; ox 99.9 5E-24 1.7E-28 176.1 17.5 172 42-227 9-182 (476)
15 1r9o_A Cytochrome P450 2C9; mo 99.9 1.4E-24 4.9E-29 179.3 14.0 163 42-217 10-174 (477)
16 3n9y_A Cholesterol SIDE-chain 99.9 1.5E-23 5.2E-28 173.5 17.5 172 38-215 4-181 (487)
17 2cib_A Cytochrome P450 51; hem 99.9 2E-23 6.9E-28 171.5 13.0 170 43-230 4-174 (455)
18 2ve3_A Putative cytochrome P45 99.9 1.6E-23 5.6E-28 171.5 11.6 176 35-230 4-179 (444)
19 3i3k_A Lanosterol 14-alpha dem 99.9 9.9E-24 3.4E-28 173.6 9.8 175 39-229 7-183 (461)
20 2ij2_A Cytochrome P450 BM3; mo 99.9 2.3E-22 8E-27 165.8 17.9 174 43-228 3-180 (470)
21 3dbg_A Putative cytochrome P45 99.9 1.1E-22 3.9E-27 167.5 9.8 171 43-231 22-193 (467)
22 3v8d_A Cholesterol 7-alpha-mon 99.9 7.1E-22 2.4E-26 163.7 11.6 167 40-215 10-177 (491)
23 2cd8_A Cytochrome P450 monooxy 99.8 5.1E-21 1.7E-25 156.3 11.2 172 38-229 21-199 (436)
24 1n97_A CYP175A1; electron tran 99.8 7.4E-21 2.5E-25 153.2 8.7 156 51-230 6-162 (389)
25 1izo_A P450bsbeta, cytochrome 99.8 1.1E-19 3.9E-24 147.5 14.9 161 51-229 7-170 (417)
26 3mdm_A Cholesterol 24-hydroxyl 99.8 1.8E-19 6.2E-24 147.9 16.1 157 65-230 10-172 (456)
27 3dax_A Cytochrome P450 7A1; ch 99.8 6.8E-20 2.3E-24 151.8 12.1 167 41-216 11-178 (491)
28 3awm_A Fatty acid alpha-hydrox 99.8 7.1E-19 2.4E-23 142.8 13.7 159 52-228 7-168 (415)
29 3b6h_A Prostacyclin synthase; 99.8 7.3E-19 2.5E-23 145.9 12.5 165 37-216 12-178 (498)
30 3dsk_A Cytochrome P450 74A, ch 99.8 6.4E-19 2.2E-23 146.1 10.2 165 41-215 26-205 (495)
31 1jfb_A Nitric-oxide reductase 99.8 5.5E-18 1.9E-22 137.1 11.2 155 45-214 3-163 (404)
32 3b98_A Prostaglandin I2 syntha 99.8 3.3E-18 1.1E-22 141.1 10.0 159 39-212 14-174 (475)
33 1ued_A P450 OXYC, P450 monooxy 99.7 2E-17 6.8E-22 133.9 11.6 160 45-228 11-182 (406)
34 3dan_A Cytochrome P450 74A2; A 99.7 2E-17 6.7E-22 136.4 11.0 166 40-215 6-187 (473)
35 1s1f_A Putative cytochrome P45 99.7 1.8E-16 6.1E-21 128.3 14.3 164 43-229 8-179 (406)
36 2zbx_A Cytochrome P450-SU1; be 99.7 1.4E-16 4.8E-21 129.2 13.2 166 44-229 6-181 (412)
37 1cpt_A Cytochrome P450-TERP; o 99.7 7.9E-17 2.7E-21 131.3 11.2 160 54-229 11-188 (428)
38 3oo3_A OXY protein; cytochrome 99.7 1.7E-16 6E-21 127.4 12.5 150 65-229 12-165 (384)
39 2zwu_A Camphor 5-monooxygenase 99.7 6.4E-16 2.2E-20 125.3 15.2 166 42-229 10-186 (415)
40 3ivy_A Cytochrome P450 CYP125; 99.7 1.4E-16 4.8E-21 129.9 10.7 148 48-212 22-186 (433)
41 3abb_A CYP105D6, cytochrome P4 99.7 4.3E-16 1.5E-20 126.2 13.0 147 65-229 24-180 (408)
42 3ejb_B Biotin biosynthesis cyt 99.7 1.1E-15 3.8E-20 123.6 14.9 146 65-230 13-166 (404)
43 3a4g_A Vitamin D hydroxylase; 99.7 4.3E-16 1.5E-20 126.2 12.0 147 65-229 20-172 (411)
44 2jjn_A Cytochrome P450 113A1; 99.7 2.6E-16 8.9E-21 127.5 10.0 152 30-215 6-158 (411)
45 3aba_A Cytochrome P450; oxidor 99.6 1.9E-15 6.5E-20 122.2 13.3 148 65-229 19-173 (403)
46 2wm5_A CYP124, putative cytoch 99.6 9.5E-16 3.2E-20 125.1 11.5 151 66-230 45-206 (435)
47 1z8o_A 6-deoxyerythronolide B 99.6 2.4E-15 8.3E-20 121.6 13.1 146 65-229 14-175 (404)
48 4fb2_A P450CIN; heme, monooxyg 99.6 4.3E-16 1.5E-20 125.7 8.4 148 65-229 19-169 (398)
49 3tyw_A Putative cytochrome P45 99.6 2.9E-15 1E-19 121.6 13.2 148 65-229 29-185 (417)
50 1odo_A Putative cytochrome P45 99.6 1.1E-15 3.8E-20 123.7 10.6 150 65-229 15-175 (408)
51 2z3t_A Cytochrome P450; monoxy 99.6 5.8E-15 2E-19 120.1 13.7 148 65-230 20-184 (425)
52 2y5n_A MYCG, P-450-like protei 99.6 1.8E-15 6.1E-20 122.8 10.6 146 65-227 37-187 (417)
53 2xbk_A PIMD protein; epoxidati 99.6 8.1E-15 2.8E-19 118.5 14.1 147 65-229 26-183 (404)
54 2uuq_A CYP130, cytochrome P450 99.6 3.6E-15 1.2E-19 120.9 11.3 146 65-229 25-181 (414)
55 2z36_A MOXA, cytochrome P450 t 99.6 7.5E-15 2.6E-19 119.0 12.7 145 65-226 22-179 (413)
56 3mgx_A Putative P450 monooxyge 99.6 2E-15 6.9E-20 122.4 9.2 149 65-230 37-192 (415)
57 2xkr_A CYP142, putative cytoch 99.6 7.6E-15 2.6E-19 118.4 11.8 143 65-230 18-161 (398)
58 1gwi_A CYP154C1, cytochrome P4 99.6 1.4E-14 4.6E-19 117.4 13.1 149 65-230 17-179 (411)
59 1q5d_A P450 epoxidase; cytochr 99.6 2.7E-15 9.2E-20 121.9 8.2 147 65-231 26-182 (419)
60 2dkk_A Cytochrome P450; CYP158 99.6 1E-14 3.4E-19 118.2 10.4 135 65-214 27-169 (411)
61 3tkt_A Cytochrome P450; aromat 99.6 8.5E-15 2.9E-19 120.0 9.8 148 67-230 47-211 (450)
62 3r9b_A Cytochrome P450 164A2; 99.6 3.6E-14 1.2E-18 115.2 13.3 145 65-230 29-182 (418)
63 3buj_A CALO2; heme, iron, meta 99.6 3.6E-14 1.2E-18 114.4 12.0 146 65-231 13-166 (397)
64 3lxh_A Cytochrome P450; heme, 99.5 9.8E-14 3.4E-18 112.7 14.0 150 65-231 38-189 (421)
65 3oft_A Cytochrome P450, CYP101 99.5 3.8E-14 1.3E-18 114.3 11.1 147 65-229 24-171 (396)
66 1n40_A P450 MT2, cytochrome P4 99.5 1.7E-14 5.7E-19 116.4 7.3 145 65-230 16-169 (396)
67 3nc3_A Cytochrome P450 CYPX; c 99.5 2.2E-14 7.6E-19 117.2 7.8 147 65-231 53-200 (441)
68 1lfk_A OXYB, P450 monooxygenas 99.5 6E-14 2.1E-18 113.2 9.1 141 71-228 19-173 (398)
69 2rfb_A Cytochrome P450; heme, 99.5 1E-13 3.4E-18 109.7 9.0 128 76-230 2-130 (343)
70 3rwl_A Cytochrome P450 alkane 99.5 7.2E-13 2.5E-17 107.8 12.8 146 65-227 38-194 (426)
71 3b4x_A 367AA long hypothetical 99.5 3.8E-13 1.3E-17 107.3 10.6 138 68-231 2-150 (367)
72 1io7_A Cytochrome P450 CYP119; 99.5 2E-13 6.8E-18 109.0 8.7 127 68-214 2-139 (368)
73 2wiy_A XPLA-heme, cytochrome P 99.3 5.1E-12 1.7E-16 101.8 10.1 141 65-225 20-160 (394)
74 3p3o_A Cytochrome P450; monoox 99.3 3.8E-12 1.3E-16 103.3 5.6 141 65-229 33-184 (416)
75 4dnj_A Putative cytochrome P45 99.2 4.6E-11 1.6E-15 96.7 10.0 147 50-212 18-171 (412)
76 4dxy_A Cytochrome P450, CYP101 98.8 6.7E-08 2.3E-12 78.3 11.7 148 65-229 37-186 (417)
77 2yjn_B Erycii, DTDP-4-keto-6-d 98.0 2.4E-08 8.1E-13 79.7 -8.8 126 51-214 42-180 (381)
78 2diu_A KIAA0430 protein; struc 86.3 2 6.7E-05 26.5 5.1 63 53-116 12-76 (96)
79 2a3j_A U1 small nuclear ribonu 73.8 15 0.00052 23.8 6.6 63 52-114 31-100 (127)
80 1s79_A Lupus LA protein; RRM, 72.5 14 0.00049 22.7 6.7 57 52-112 13-77 (103)
81 2krb_A Eukaryotic translation 72.5 12 0.0004 21.7 7.6 58 54-113 5-74 (81)
82 1iqt_A AUF1, heterogeneous nuc 70.5 12 0.00041 21.1 5.4 50 55-108 4-62 (75)
83 2knc_A Integrin alpha-IIB; tra 68.2 12 0.00041 20.2 4.6 21 24-44 23-43 (54)
84 2nlw_A Eukaryotic translation 68.2 18 0.00062 22.2 6.6 59 53-113 18-88 (105)
85 2dgx_A KIAA0430 protein; RRM d 63.5 17 0.00058 21.8 5.0 54 53-106 12-71 (96)
86 1nu4_A U1A RNA binding domain; 61.6 18 0.00063 21.6 4.9 55 52-106 10-70 (97)
87 3lqv_A PRE-mRNA branch site pr 58.1 31 0.001 21.4 7.6 54 48-105 6-65 (115)
88 2mss_A Protein (musashi1); RNA 58.0 23 0.00077 19.9 5.6 54 55-112 4-66 (75)
89 3s7r_A Heterogeneous nuclear r 53.5 31 0.001 20.0 5.1 53 52-108 13-74 (87)
90 2l8s_A Integrin alpha-1; trans 50.3 29 0.00097 18.7 4.4 16 27-42 23-38 (54)
91 2kvi_A Nuclear polyadenylated 48.9 40 0.0014 20.0 6.7 58 52-113 12-72 (96)
92 4fxv_A ELAV-like protein 1; RN 48.0 40 0.0014 20.4 4.8 55 53-111 22-86 (99)
93 3d2w_A TAR DNA-binding protein 48.0 41 0.0014 19.8 5.7 49 51-103 12-64 (89)
94 3v4m_A Splicing factor U2AF 65 46.1 50 0.0017 20.3 6.0 47 69-115 30-88 (105)
95 3beg_B Splicing factor, argini 45.8 52 0.0018 20.5 7.2 58 53-114 19-79 (115)
96 3s6e_A RNA-binding protein 39; 45.7 32 0.0011 21.7 4.1 46 70-115 33-84 (114)
97 1whx_A Hypothetical protein ri 45.3 52 0.0018 20.3 7.0 58 53-114 13-74 (111)
98 2jwn_A Embryonic polyadenylate 44.6 56 0.0019 20.5 5.5 54 54-111 40-102 (124)
99 2dgs_A DAZ-associated protein 43.8 50 0.0017 19.7 6.7 58 52-113 12-78 (99)
100 2pe8_A Splicing factor 45; RRM 43.3 56 0.0019 20.1 6.0 64 51-114 9-84 (105)
101 3ns6_A Eukaryotic translation 43.1 53 0.0018 19.7 6.2 60 53-112 9-80 (100)
102 2dh8_A DAZ-associated protein 41.8 56 0.0019 19.7 5.2 57 52-112 18-83 (105)
103 2hvz_A Splicing factor, argini 41.4 56 0.0019 19.5 6.1 57 54-114 4-65 (101)
104 3ue2_A Poly(U)-binding-splicin 40.9 67 0.0023 20.3 5.3 65 51-115 21-100 (118)
105 4f25_A Polyadenylate-binding p 40.7 64 0.0022 20.0 5.9 55 53-111 8-70 (115)
106 2rs2_A Musashi-1, RNA-binding 40.3 63 0.0021 19.8 5.5 51 53-107 28-87 (109)
107 3md1_A Nuclear and cytoplasmic 39.8 51 0.0018 18.7 5.1 48 55-106 6-62 (83)
108 3ex7_B RNA-binding protein 8A; 38.5 72 0.0025 20.0 7.0 58 53-114 25-92 (126)
109 1x4b_A Heterogeneous nuclear r 38.0 64 0.0022 19.9 4.8 51 54-108 31-90 (116)
110 2xnq_A Nuclear polyadenylated 37.6 65 0.0022 19.2 7.0 50 53-106 25-76 (97)
111 2dgu_A Heterogeneous nuclear r 37.5 67 0.0023 19.3 6.6 56 52-111 13-70 (103)
112 2div_A TRNA selenocysteine ass 37.4 64 0.0022 19.1 5.4 59 52-114 11-80 (99)
113 2cpf_A RNA binding motif prote 37.2 65 0.0022 19.0 5.9 56 52-111 7-75 (98)
114 1p27_B RNA-binding protein 8A; 36.7 69 0.0024 19.3 6.6 56 53-112 26-91 (106)
115 2adc_A Polypyrimidine tract-bi 36.5 1.1E+02 0.0038 21.6 7.7 59 52-114 36-100 (229)
116 1x4e_A RNA binding motif, sing 36.4 61 0.0021 18.5 5.1 50 52-105 7-65 (85)
117 2cq4_A RNA binding motif prote 35.7 76 0.0026 19.4 5.6 54 54-111 29-91 (114)
118 2jvo_A Nucleolar protein 3; nu 35.7 76 0.0026 19.4 5.5 54 54-111 35-90 (108)
119 2err_A Ataxin-2-binding protei 35.6 63 0.0022 19.8 4.4 49 54-106 33-88 (109)
120 2cq1_A PTB-like protein L; RRM 35.2 76 0.0026 19.3 6.0 54 48-105 13-69 (101)
121 2voo_A Lupus LA protein; RNA-b 34.2 74 0.0025 22.1 4.9 50 54-107 113-170 (193)
122 2dnh_A Bruno-like 5, RNA bindi 34.1 77 0.0026 19.0 5.5 51 52-106 17-75 (105)
123 2cq3_A RNA-binding protein 9; 34.1 76 0.0026 19.0 6.1 56 52-111 17-80 (103)
124 2dnr_A Synaptojanin-1; RRM dom 34.0 79 0.0027 19.1 4.8 46 66-111 27-73 (91)
125 2jvr_A Nucleolar protein 3; RN 33.9 86 0.0029 19.5 5.9 57 52-112 30-93 (111)
126 2cqb_A Peptidyl-prolyl CIS-tra 33.6 65 0.0022 19.2 4.2 51 52-106 14-73 (102)
127 3ulh_A THO complex subunit 4; 33.6 80 0.0027 19.0 5.7 55 53-111 32-95 (107)
128 2cpi_A CCR4-NOT transcription 33.5 49 0.0017 20.4 3.6 58 52-113 17-90 (111)
129 1x4c_A Splicing factor, argini 33.4 82 0.0028 19.1 7.0 50 53-106 18-69 (108)
130 1uaw_A Mouse-musashi-1; RNP-ty 33.3 64 0.0022 17.9 4.4 50 54-107 4-62 (77)
131 1x5u_A Splicing factor 3B subu 32.9 81 0.0028 18.9 7.0 58 53-114 18-85 (105)
132 2kn4_A Immunoglobulin G-bindin 32.8 1E+02 0.0036 20.1 6.3 57 53-113 73-139 (158)
133 2wbr_A GW182, gawky, LD47780P; 31.9 86 0.0029 18.9 6.9 50 51-104 8-60 (89)
134 3pgw_S U1-70K; protein-RNA com 31.8 1.1E+02 0.0037 24.6 6.1 56 52-111 104-169 (437)
135 1sjr_A Polypyrimidine tract-bi 31.7 1.2E+02 0.0042 20.6 6.4 54 54-111 50-109 (164)
136 2cpj_A Non-POU domain-containi 31.6 83 0.0028 18.6 4.7 58 52-113 17-78 (99)
137 2cjk_A Nuclear polyadenylated 31.6 1.1E+02 0.0037 20.0 5.7 56 54-113 91-155 (167)
138 2ywk_A Putative RNA-binding pr 31.5 80 0.0027 18.4 5.7 49 53-105 19-75 (95)
139 1l3k_A Heterogeneous nuclear r 31.4 1.2E+02 0.0042 20.5 6.0 55 53-111 16-79 (196)
140 1jmt_A Splicing factor U2AF 35 31.2 92 0.0031 19.0 5.3 43 72-114 44-96 (104)
141 3tyt_A Heterogeneous nuclear r 31.1 1.4E+02 0.0046 20.9 6.2 58 51-112 5-68 (205)
142 3ucg_A Polyadenylate-binding p 31.0 78 0.0027 18.1 6.1 55 54-112 10-73 (89)
143 1r5q_A KAI A, circadian oscill 30.9 92 0.0031 18.9 5.1 64 135-207 29-92 (102)
144 2i2y_A Fusion protein consists 30.9 1.1E+02 0.0038 19.9 7.6 57 53-113 76-137 (150)
145 2ad9_A Polypyrimidine tract-bi 30.8 1E+02 0.0036 19.5 5.9 51 51-105 32-85 (119)
146 2dnz_A Probable RNA-binding pr 30.7 83 0.0028 18.4 7.6 59 52-114 7-75 (95)
147 3n9u_C Cleavage and polyadenyl 30.5 1.2E+02 0.0041 20.1 6.1 40 67-106 68-118 (156)
148 2xs2_A Deleted in azoospermia- 30.5 72 0.0025 19.0 4.0 48 54-105 13-68 (102)
149 2fy1_A RNA-binding motif prote 30.5 99 0.0034 19.2 5.9 58 53-114 10-76 (116)
150 2dnq_A RNA-binding protein 4B; 30.5 82 0.0028 18.2 7.3 51 52-106 10-61 (90)
151 2x1f_A MRNA 3'-END-processing 30.3 86 0.0029 18.4 6.5 49 54-106 6-63 (96)
152 2cq0_A Eukaryotic translation 29.8 62 0.0021 19.4 3.6 51 52-106 17-76 (103)
153 3zzy_A Polypyrimidine tract-bi 29.3 1.2E+02 0.004 19.7 5.4 54 54-111 32-91 (130)
154 1oo0_B CG8781-PA, drosophila Y 29.2 98 0.0034 18.7 6.6 50 53-106 29-87 (110)
155 3r27_A HnRNP L, heterogeneous 28.4 1.1E+02 0.0036 18.8 7.1 51 51-105 22-75 (100)
156 4a8x_A RNA-binding protein wit 27.9 89 0.003 17.8 6.5 54 54-111 8-72 (88)
157 3p5t_L Cleavage and polyadenyl 27.9 93 0.0032 18.0 4.3 57 54-114 5-73 (90)
158 1p1t_A Cleavage stimulation fa 27.9 1E+02 0.0034 18.4 5.8 50 53-106 11-69 (104)
159 2k1a_A Integrin alpha-IIB; sin 27.4 67 0.0023 16.2 4.7 13 27-39 24-36 (42)
160 3md3_A Nuclear and cytoplasmic 27.2 1.3E+02 0.0045 19.5 5.3 54 54-111 4-66 (166)
161 1v2z_A Circadian clock protein 26.9 1.2E+02 0.004 18.8 6.1 64 136-208 37-100 (111)
162 1rk8_A CG8781-PA, CG8781-PA pr 26.9 1.4E+02 0.0049 19.8 5.9 55 53-111 75-139 (165)
163 1u6f_A Tcubp1, RNA-binding pro 26.9 1.3E+02 0.0043 19.2 6.1 55 54-112 46-110 (139)
164 2ghp_A U4/U6 snRNA-associated 26.6 1.3E+02 0.0046 22.1 5.6 59 52-114 43-108 (292)
165 1whv_A Poly(A)-specific ribonu 26.0 93 0.0032 19.2 3.6 49 67-115 28-79 (100)
166 2do4_A Squamous cell carcinoma 25.8 1.1E+02 0.0037 18.1 7.5 57 52-112 19-84 (100)
167 3ctr_A Poly(A)-specific ribonu 25.6 66 0.0022 19.9 2.9 49 68-116 19-70 (101)
168 2la6_A RNA-binding protein FUS 25.3 1.1E+02 0.0038 18.0 6.4 56 53-112 16-89 (99)
169 3bs9_A Nucleolysin TIA-1 isofo 25.1 1E+02 0.0035 17.5 5.5 50 53-106 9-67 (87)
170 2qfj_A FBP-interacting repress 24.9 1.7E+02 0.0059 20.1 7.6 55 54-112 32-96 (216)
171 1wf0_A TDP-43, TAR DNA-binding 24.5 80 0.0027 18.2 3.3 48 53-104 8-59 (88)
172 2dgv_A HnRNP M, heterogeneous 24.3 1.1E+02 0.0038 17.6 7.0 57 53-113 11-75 (92)
173 2cqi_A Nucleolysin TIAR; RNA r 24.2 1.2E+02 0.0041 18.0 6.4 50 52-105 17-73 (103)
174 2dgo_A Cytotoxic granule-assoc 24.2 1.3E+02 0.0044 18.4 5.9 50 53-106 18-76 (115)
175 1x5s_A Cold-inducible RNA-bind 24.2 1.2E+02 0.0041 18.0 6.9 59 52-114 14-82 (102)
176 1x4g_A Nucleolysin TIAR; struc 24.1 1.3E+02 0.0043 18.2 6.8 51 52-106 27-80 (109)
177 2cph_A RNA binding motif prote 23.7 1.2E+02 0.0043 18.0 8.6 59 52-114 17-87 (107)
178 1fxl_A Paraneoplastic encephal 23.6 1.6E+02 0.0053 19.1 5.3 55 54-112 6-70 (167)
179 2kxn_B Transformer-2 protein h 23.3 1.5E+02 0.0051 18.8 8.7 57 52-112 48-114 (129)
180 2dnm_A SRP46 splicing factor; 23.1 1.3E+02 0.0043 17.9 6.9 57 53-113 16-82 (103)
181 1whw_A Hypothetical protein ri 23.0 1.2E+02 0.0042 17.7 7.0 50 53-106 11-69 (99)
182 1wg5_A Heterogeneous nuclear r 22.7 1.3E+02 0.0045 18.0 6.7 58 53-114 18-84 (104)
183 2cpz_A CUG triplet repeat RNA- 22.7 1.4E+02 0.0047 18.2 5.9 51 52-106 27-86 (115)
184 1ufw_A Synaptojanin 2; RNP dom 22.5 1.4E+02 0.0048 18.2 4.3 46 66-111 36-82 (95)
185 2ytc_A PRE-mRNA-splicing facto 22.4 1.1E+02 0.0039 17.2 7.1 51 52-106 14-67 (85)
186 2e5h_A Zinc finger CCHC-type a 22.4 1.2E+02 0.0042 17.5 6.8 51 51-105 17-76 (94)
187 2la4_A Nuclear and cytoplasmic 22.3 1.3E+02 0.0044 17.8 5.6 50 53-106 30-82 (101)
188 2cqc_A Arginine/serine-rich sp 22.2 1.2E+02 0.0042 17.5 6.6 51 52-106 17-76 (95)
189 2dgt_A RNA-binding protein 30; 22.2 1.2E+02 0.0042 17.5 6.6 56 52-111 12-69 (92)
190 2cqd_A RNA-binding region cont 22.0 1.4E+02 0.0049 18.2 6.4 50 53-106 20-78 (116)
191 3pgw_A U1-A; protein-RNA compl 22.0 1.7E+02 0.006 21.3 5.4 62 52-113 11-79 (282)
192 1h2v_Z 20 kDa nuclear CAP bind 22.0 1.7E+02 0.0059 19.1 5.9 51 52-106 41-100 (156)
193 2d9p_A Polyadenylate-binding p 21.7 1.4E+02 0.0047 17.8 6.7 58 51-112 16-81 (103)
194 4f02_A Polyadenylate-binding p 20.5 2.2E+02 0.0076 19.7 5.9 50 53-106 18-76 (213)
195 1sjq_A Polypyrimidine tract-bi 20.4 1.6E+02 0.0055 18.1 6.6 50 52-105 18-70 (105)
196 1x5t_A Splicing factor 3B subu 20.2 1.4E+02 0.0048 17.3 4.4 49 53-105 8-66 (96)
197 1x4d_A Matrin 3; structural ge 20.2 1.6E+02 0.0054 17.9 5.9 51 51-105 16-70 (102)
198 2cpy_A RNA-binding protein 12; 20.2 1E+02 0.0035 18.9 3.3 55 53-111 18-81 (114)
199 2ki2_A SS-DNA binding protein 20.1 1.4E+02 0.0046 17.1 4.7 55 54-113 5-69 (90)
No 1
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=99.96 E-value=2.8e-28 Score=202.32 Aligned_cols=192 Identities=21% Similarity=0.300 Sum_probs=148.8
Q ss_pred ccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhHHH
Q 044206 43 REAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAMEI 122 (245)
Q Consensus 43 ~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~~~ 122 (245)
+.||||+ ++|++||++++...+..+..+.+|+++||+|+++++|++++|+++||+++++++.+++..|++|+.......
T Consensus 8 ~~PPgP~-~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~~~~~ 86 (494)
T 3swz_A 8 KYPKSLL-SLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDI 86 (494)
T ss_dssp ----CCB-CCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCHHHHH
T ss_pred CCCCCCC-CCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcHHHHH
Confidence 3455554 899999999886434688899999999999999999999999999999999999988889999987666565
Q ss_pred hhcCCcceeeccCCcchHHHHHHHHHhhhhh--hhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHHHHH
Q 044206 123 LGYNFSMFGFSPYGSYWREIRKIATLELLSN--HRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDTI 200 (245)
Q Consensus 123 ~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~--~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~ 200 (245)
.+.+..+++++.+|+.|+++||++.++ |+. ..+..+.+.+.+++.++++.+. ... +.++|+.+++..++
T Consensus 87 ~~~~~~gl~~~~~g~~wr~~Rr~~~~~-f~~~~~~~~~~~~~i~~~~~~l~~~l~------~~~--~~~vd~~~~~~~~t 157 (494)
T 3swz_A 87 ASNNRKGIAFADSGAHWQLHRRLAMAT-FALFKDGDQKLEKIICQEISTLCDMLA------THN--GQSIDISFPVFVAV 157 (494)
T ss_dssp HTTTTCSSSSSCSSHHHHHHHHHHHHH-TTTTSSSTTCHHHHHHHHHHHHHHHHH------HTT--TEEECCHHHHHHHH
T ss_pred hccCCCCeEeCCCCHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHHHHHHHHH------HcC--CCcccHHHHHHHHH
Confidence 655445777777799999999999986 663 4577888999999999888883 222 45899999999999
Q ss_pred HHHHHHHHhcCCCCCCCh--HHHHHHHHHHhhcccCcccccccccC
Q 044206 201 RNVVLRMIVGKGCDSVDG--EEWIELLTRFSEMSGKFVVSDALPFL 244 (245)
Q Consensus 201 ~~vi~~~~fG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~P~l 244 (245)
+|+|+.++||.+++.++. ..+.+..+.+........+.+++||+
T Consensus 158 ~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l 203 (494)
T 3swz_A 158 TNVISLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWL 203 (494)
T ss_dssp HHHHHHHHHSCCCCTTCTHHHHHHHHHHHHHHHHCSSSSCCSSCGG
T ss_pred HHHHHHHHcCCcCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 999999999998875432 22333344444444444566777775
No 2
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=99.95 E-value=2.1e-27 Score=197.61 Aligned_cols=193 Identities=21% Similarity=0.357 Sum_probs=130.5
Q ss_pred ccccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhH
Q 044206 41 KKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAM 120 (245)
Q Consensus 41 ~~~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~ 120 (245)
+.+.||+|+ ++|++|+++.+. .+++..+.+++++||+||++++|+.++|+++||+++++|+.+++..|.+++.....
T Consensus 7 ~~~~pPgP~-~~P~iG~~~~~~--~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~ 83 (507)
T 3pm0_A 7 SKGKPPGPF-AWPLIGNAAAVG--QAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASF 83 (507)
T ss_dssp ------------------------CCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCHHH
T ss_pred CCCCCcCCC-CCCeeCchhhcC--ccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcchHH
Confidence 445666665 799999999987 68999999999999999999999999999999999999998888889888765544
Q ss_pred HHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhh------hchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHH
Q 044206 121 EILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLG------KLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKR 194 (245)
Q Consensus 121 ~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~ 194 (245)
.....+ .+++++.+|+.|+++||++++. |+..... .+.+.+.++++++++.+.+. .+++.++|+.+
T Consensus 84 ~~~~~g-~~l~~~~~g~~w~~~R~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~------~~~~~~vd~~~ 155 (507)
T 3pm0_A 84 RVVSGG-RSMAFGHYSEHWKVQRRAAHSM-MRNFFTRQPRSRQVLEGHVLSEARELVALLVRG------SADGAFLDPRP 155 (507)
T ss_dssp HHGGGG-TCSSSSCSSHHHHHHHHHHHHH-HHHSTTSSTTHHHHHHHHHHHHHHHHHHHHHHT------TGGGCCBCCHH
T ss_pred HhhcCC-CceEECCCChHHHHHHHHHHHH-HHHhcCCccchHHHHHHHHHHHHHHHHHHHHhh------cccCCCcChHH
Confidence 433323 3566666799999999999986 5654433 38889999999999998532 11244899999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHhhcccCcccccccccC
Q 044206 195 WFTDTIRNVVLRMIVGKGCDSVDGE--EWIELLTRFSEMSGKFVVSDALPFL 244 (245)
Q Consensus 195 ~~~~~~~~vi~~~~fG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~P~l 244 (245)
++..+++|+++.++||.+++.++.+ ++.+.+.++........+.+++||+
T Consensus 156 ~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l 207 (507)
T 3pm0_A 156 LTVVAVANVMSAVCFGCRYSHDDPEFRELLSHNEEFGRTVGAGSLVDVMPWL 207 (507)
T ss_dssp HHHHHHHHHHHHHHTSCCCCTTCHHHHHHTSCHHHHHHHHSTTCCTTTCGGG
T ss_pred HHHHHHHHHHHHHHccccCCCCCHHHHHHHHHHHHHHHhcccchHHHHhHHH
Confidence 9999999999999999998764421 2333344444444333345566654
No 3
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=99.95 E-value=3.2e-27 Score=196.35 Aligned_cols=166 Identities=17% Similarity=0.154 Sum_probs=128.7
Q ss_pred ccccccCCCCCCCCcccccccccCC--CCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCC
Q 044206 39 SKKKREAPEARGSWPVIGHLHLLGG--PEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPK 116 (245)
Q Consensus 39 ~~~~~~~p~~~~~~p~lG~~~~~~~--~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~ 116 (245)
.++.+.||||+ ++|++||++.+.. ....+..+.+|+++||||+++++|+.+.|+++||+++++++.+ ..|++++.
T Consensus 41 ~~~~~~pPGP~-~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~--~~~~~r~~ 117 (503)
T 3s79_A 41 YEGTSSIPGPG-YCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKH--NHYSSRFG 117 (503)
T ss_dssp ----CCCCSCC-CCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHS--GGGCCCCC
T ss_pred HhccCCCCCCC-CCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhc--CCCCCcch
Confidence 33556777776 8999999988741 0235568889999999999999999999999999999999943 45777764
Q ss_pred hh-hHHHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHH
Q 044206 117 TL-AMEILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRW 195 (245)
Q Consensus 117 ~~-~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~ 195 (245)
.. .....+....+++++.+|+.|+++||+++++ |+..+++.+.+.+.+++.++++.+. +..+.+..+|+.++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~g~~w~~~Rr~~~~~-f~~~~l~~~~~~~~~~~~~~l~~l~------~~~~~~~~vdl~~~ 190 (503)
T 3s79_A 118 SKLGLQCIGMHEKGIIFNNNPELWKTTRPFFMKA-LSGPGLVRMVTVCAESLKTHLDRLE------EVTNESGYVDVLTL 190 (503)
T ss_dssp CHHHHHHHTCTTSSSTTCCCHHHHHHHHHHHHHH-TSTHHHHHHHHHHHHHHHHHHTTGG------GTBCTTSCBCHHHH
T ss_pred hhhhhhhhccCCCceeeCCCccHHHHHHHhhhHh-hChHHHHHHHHHHHHHHHHHHHHHH------HHhcCCCeEcHHHH
Confidence 33 2233333334666677799999999999986 8999999999999988888887772 22222447999999
Q ss_pred HHHHHHHHHHHHHhcCCCC
Q 044206 196 FTDTIRNVVLRMIVGKGCD 214 (245)
Q Consensus 196 ~~~~~~~vi~~~~fG~~~~ 214 (245)
++.+++|++++++||.+++
T Consensus 191 ~~~~~~~vi~~~~fG~~~~ 209 (503)
T 3s79_A 191 LRRVMLDTSNTLFLRIPLD 209 (503)
T ss_dssp HHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHcCcccC
Confidence 9999999999999999885
No 4
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=99.94 E-value=6.5e-27 Score=193.65 Aligned_cols=164 Identities=16% Similarity=0.207 Sum_probs=135.7
Q ss_pred hccccccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhC-CccccCCCC
Q 044206 38 TSKKKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTH-DKVFASRPK 116 (245)
Q Consensus 38 ~~~~~~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~-~~~~~~~~~ 116 (245)
..++++.+|||+ ++|++||++.+. .+++.++.+|+++|||++++++|+.+.|+++||+++++++.++ ...|.+++.
T Consensus 9 ~~~k~~~~PGP~-~~PliGn~~~~~--~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~ 85 (485)
T 3nxu_A 9 GLFKKLGIPGPT-PLPFLGNILSYH--KGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRP 85 (485)
T ss_dssp THHHHHTCCCCC-CBTTTBTGGGGG--GCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCC
T ss_pred hHHhhCCCCCCC-CcCeecCcHHhh--cChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCcc
Confidence 344667888887 799999999987 6789999999999999999999999999999999999999776 566776654
Q ss_pred hhhHHHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHH
Q 044206 117 TLAMEILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWF 196 (245)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~ 196 (245)
.......+ .++.. .+|+.|+++||+++++ |+.++++.+.+.+.++++++++.+.+... ++.++|+.+++
T Consensus 86 ~~~~~~~~---~~l~~-~~g~~w~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~~~~------~g~~~d~~~~~ 154 (485)
T 3nxu_A 86 FGPVGFMK---SAISI-AEDEEWKRLRSLLSPT-FTSGKLKEMVPIIAQYGDVLVRNLRREAE------TGKPVTLKDVF 154 (485)
T ss_dssp CSCCGGGG---GSTTT-CCHHHHHHHHHHHGGG-GCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HTCCEEHHHHH
T ss_pred cccccccc---cCccc-cCCcHHHHHHhhcChh-cCHHHHHHHHHHHHHHHHHHHHHHHHHhc------cCCcCcHHHHH
Confidence 33222222 24444 4599999999999986 89999999999999999999999954321 13489999999
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 044206 197 TDTIRNVVLRMIVGKGCDS 215 (245)
Q Consensus 197 ~~~~~~vi~~~~fG~~~~~ 215 (245)
..+++|+++.++||.+++.
T Consensus 155 ~~~~~dvi~~~~fG~~~~~ 173 (485)
T 3nxu_A 155 GAYSMDVITSTSFGVNIDS 173 (485)
T ss_dssp HHHHHHHHHHHHHSCCCCG
T ss_pred HHHHHHHHHHHHcCCcccc
Confidence 9999999999999999875
No 5
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=99.94 E-value=1.8e-27 Score=197.48 Aligned_cols=156 Identities=12% Similarity=0.207 Sum_probs=122.1
Q ss_pred ccccccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChh
Q 044206 39 SKKKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTL 118 (245)
Q Consensus 39 ~~~~~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~ 118 (245)
.++.+.||||+ + ++++.. ++++..+.+++++||||+++++|+.+.++++||+++++++.+++..|++++...
T Consensus 25 ~~~~~lPPGP~-~------l~~~~~-~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~~ 96 (496)
T 3qz1_A 25 LRNLHLPPLVP-G------FLHLLQ-PNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIP 96 (496)
T ss_dssp ----CCCCBCS-C------SCTTSS-SCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCCT
T ss_pred ccCCCCCcCCc-c------ccccCC-CcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCcc
Confidence 34445666655 3 444432 689999999999999999999999999999999999999988877888887654
Q ss_pred hHHHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHHH
Q 044206 119 AMEILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTD 198 (245)
Q Consensus 119 ~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~ 198 (245)
.......+..++++.++|+.|+++||+++++ |+...++.+.+.+.++++++++.+. +.. ++++|+.+++..
T Consensus 97 ~~~~~~~~~~~l~~~~~g~~w~~~Rr~~~~~-f~~~~~~~~~~~i~~~~~~l~~~l~------~~~--~~~vd~~~~~~~ 167 (496)
T 3qz1_A 97 SYKLVSQRCQDISLGDYSLLWKAHKKLTRSA-LLLGTRSSMEPWVDQLTQEFCERMR------VQA--GAPVTIQKEFSL 167 (496)
T ss_dssp TTTTSCTTCCCSSSSCCSHHHHHHHHHHHHH-HHC--CCCHHHHHHHHHHHHHHHHH------TTC--SCCCHHHHHHTH
T ss_pred hHHHhcCCCCceEECCCCHHHHHHHHHHHHH-HhhccHhhHHHHHHHHHHHHHHHHH------hcC--CCccCHHHHHHH
Confidence 3332322333666666699999999999997 7877778899999999999999993 222 448999999999
Q ss_pred HHHHHHHHHHhcC
Q 044206 199 TIRNVVLRMIVGK 211 (245)
Q Consensus 199 ~~~~vi~~~~fG~ 211 (245)
+++|+|++++||.
T Consensus 168 ~~~dvi~~~~fG~ 180 (496)
T 3qz1_A 168 LTCSIICYLTFGN 180 (496)
T ss_dssp HHHHHTTTTSTTC
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999998
No 6
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=99.94 E-value=4e-26 Score=189.43 Aligned_cols=193 Identities=23% Similarity=0.370 Sum_probs=141.5
Q ss_pred ccccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhH
Q 044206 41 KKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAM 120 (245)
Q Consensus 41 ~~~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~ 120 (245)
+...+|||+ ++|++|+++.+. ++++..+.+++++||||+++++|+.++++++||+++++++.+++..|.+++.....
T Consensus 14 ~lp~~PgP~-~~p~~G~~~~~~--~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~~~~ 90 (495)
T 2hi4_A 14 GLKSPPEPW-GWPLLGHVLTLG--KNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTS 90 (495)
T ss_dssp TCBCCCCCC-CBTTTBTHHHHT--TCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCCHHH
T ss_pred CCCCCCCCC-CCcceeeHHhcC--ccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCcHHH
Confidence 334447766 799999998886 67899999999999999999999999999999999999998777778877654333
Q ss_pred HHhhcCCcceeec-cCCcchHHHHHHHHHhhhhh---hhh---h---hchHHHHHHHHHHHHHHHHhhhhhccCCCcccc
Q 044206 121 EILGYNFSMFGFS-PYGSYWREIRKIATLELLSN---HRL---G---KLRHVREYELKTSLKDLYELWDKNKSTNKMLLV 190 (245)
Q Consensus 121 ~~~~~~~~~~~~~-~~g~~w~~~R~~~~~~lf~~---~~l---~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 190 (245)
.....+ .+++++ ++|+.|+++||+++++ |+. .+. + .+.+.+.++++++++.+.+.. .. ++++
T Consensus 91 ~~~~~~-~~l~~~~~~g~~w~~~Rr~~~~~-f~~~s~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~----~~--~~~~ 162 (495)
T 2hi4_A 91 TLITDG-QSLTFSTDSGPVWAARRRLAQNA-LNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELM----AG--PGHF 162 (495)
T ss_dssp HTSTTS-CCTTTSSCCSHHHHHHHHHHHHH-HHHTTTSBCSSCSSCBHHHHHHHHHHHHHHHHHHHHH----HT--TSCB
T ss_pred HHhcCC-CCEEEcCCCChHHHHHHHHHHHH-HHHhccCcccccchhhhHHHHHHHHHHHHHHHHHHhc----cC--CCcc
Confidence 222222 355555 4699999999999986 553 222 2 688899999999999985421 11 3379
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCCh--HHHHHHHHHHhhcccCcccccccccC
Q 044206 191 EMKRWFTDTIRNVVLRMIVGKGCDSVDG--EEWIELLTRFSEMSGKFVVSDALPFL 244 (245)
Q Consensus 191 d~~~~~~~~~~~vi~~~~fG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~P~l 244 (245)
|+.+++..+++|++++++||.+++.++. .++.+.++++..........+++||+
T Consensus 163 d~~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l 218 (495)
T 2hi4_A 163 DPYNQVVVSVANVIGAMCFGQHFPESSDEMLSLVKNTHEFVETASSGNPLDFFPIL 218 (495)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGSCTTCHHHHHHHTTTHHHHTTSSTTCGGGTCGGG
T ss_pred chHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccchHHHHhHHH
Confidence 9999999999999999999998875442 12333444444443332344566754
No 7
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=99.94 E-value=7.4e-26 Score=187.10 Aligned_cols=190 Identities=15% Similarity=0.210 Sum_probs=145.3
Q ss_pred hhhhccccccCCCCCCCCcccccccccC---CCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccc
Q 044206 35 SKYTSKKKREAPEARGSWPVIGHLHLLG---GPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVF 111 (245)
Q Consensus 35 ~~~~~~~~~~~p~~~~~~p~lG~~~~~~---~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~ 111 (245)
+..+.++.+.+|||+ ++|++||++.+. ..++.+..+.+++++||||+++++|+.+.|+++||+++++|+.+ ...|
T Consensus 16 ~~~~~~pl~~~PGP~-~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~-~~~~ 93 (482)
T 3k9v_A 16 TDGETRNVTDLPGPT-NWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRT-ESAH 93 (482)
T ss_dssp ---CCEEGGGCCCSC-CCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHT-CCSS
T ss_pred cccccCCCCCCCCCC-CCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHh-cCCC
Confidence 445677888999887 799999988763 11467889999999999999999999999999999999999976 4567
Q ss_pred cCCCChhh---HHHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcc
Q 044206 112 ASRPKTLA---MEILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKML 188 (245)
Q Consensus 112 ~~~~~~~~---~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 188 (245)
.+++.... .........+++.. +|+.|+++||.+.+++++.+.++.+.+.+.++++++++.+.+.. ...++
T Consensus 94 ~~r~~~~~~~~~~~~~~~~~~l~~~-~g~~w~~~Rr~~~~~f~~~~~~~~~~~~i~~~~~~l~~~l~~~~-----~~~g~ 167 (482)
T 3k9v_A 94 PQRLEIKPWKAYRDHRNEAYGLMIL-EGQEWQRVRSAFQKKLMKPVEIMKLDKKINEVLADFLERMDELC-----DERGR 167 (482)
T ss_dssp CCCCCCHHHHHHHHHHTCCCCTTTC-CHHHHHHHHHHHHHHHTCHHHHGGGHHHHHHHHHHHHHHHHHHC-----CTTSC
T ss_pred CCCCCchHHHHHHHhcCCCCCceeC-CCchHHHHHHHhhHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCC
Confidence 77764321 11122222355544 59999999999999755888899999999999999999995421 11244
Q ss_pred cchhHHHHHHHHHHHHHHHHhcCCCCCC------ChHHHHHHHHHHhhcc
Q 044206 189 LVEMKRWFTDTIRNVVLRMIVGKGCDSV------DGEEWIELLTRFSEMS 232 (245)
Q Consensus 189 ~~d~~~~~~~~~~~vi~~~~fG~~~~~~------~~~~~~~~~~~~~~~~ 232 (245)
++|+.+++..+++|++++++||.+++.. +..++.+.+.......
T Consensus 168 ~vd~~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (482)
T 3k9v_A 168 IPDLYSELNKWSFESICLVLYEKRFGLLQKETEEEALTFITAIKTMMSTF 217 (482)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHSCCCCSSSTTSTTSSHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHHHHHcccccCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999988542 2246667666665543
No 8
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=99.93 E-value=2.3e-24 Score=177.99 Aligned_cols=166 Identities=21% Similarity=0.358 Sum_probs=128.0
Q ss_pred ccccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhH
Q 044206 41 KKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAM 120 (245)
Q Consensus 41 ~~~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~ 120 (245)
+.+.||||+ ++|++||++++.. .+.+..+.+|+++|||||++++|++++|+++||+++++||.+++..|++|+.....
T Consensus 8 ~~kLPPGP~-~lP~iGn~~~~~~-~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~~~~ 85 (479)
T 3tbg_A 8 KGKLPPGPL-PLPGLGNLLHVDF-QNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPIT 85 (479)
T ss_dssp -CCCCCCSC-CBTTTBTGGGCCT-TSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCCGGG
T ss_pred CCCCCCCCC-CcCcccchHhhcC-CCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCchHHH
Confidence 334555554 8999999998853 57888999999999999999999999999999999999999888889888766555
Q ss_pred HHhhcC--CcceeeccCCcchHHHHHHHHHhhhhhhhhhh--chHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHH
Q 044206 121 EILGYN--FSMFGFSPYGSYWREIRKIATLELLSNHRLGK--LRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWF 196 (245)
Q Consensus 121 ~~~~~~--~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~ 196 (245)
...+.+ ..+++++.+|+.|+++|+.+.+. |+...+.. +.+.+......+...+ .... +..+|+.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~--~~~~~~~~~~ 156 (479)
T 3tbg_A 86 QILGFGPRSQGVFLARYGPAWREQRRFSVST-LRNLGLGKKSLEQWVTEEAACLCAAF------ANHS--GRPFRPNGLL 156 (479)
T ss_dssp GGGTCBTTBCCSTTCCSSHHHHHHHHHHHHH-HHHTTSTTCHHHHHHHHHHHHHHHHH------HTTT--TCCBCTHHHH
T ss_pred HHhccCCCCCceeeCCCCHHHHHHHHHHHHH-hcchhhhHHHHHHHHHHHHHHHHHHH------Hhcc--CCcccHHHHH
Confidence 444332 23556677799999999999986 67666643 3344444444444444 2222 3478999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCC
Q 044206 197 TDTIRNVVLRMIVGKGCDSVD 217 (245)
Q Consensus 197 ~~~~~~vi~~~~fG~~~~~~~ 217 (245)
..+++|+++.++||.+++..+
T Consensus 157 ~~~~~~~~~~~~fg~~~~~~~ 177 (479)
T 3tbg_A 157 DKAVSNVIASLTCGRRFEYDD 177 (479)
T ss_dssp HHHHHHHHHHHHHSCCCCTTC
T ss_pred HHHHHHHHHHhhcCCcccccc
Confidence 999999999999999998754
No 9
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=99.93 E-value=7.8e-25 Score=181.08 Aligned_cols=177 Identities=22% Similarity=0.317 Sum_probs=134.5
Q ss_pred cccCCCCCCCCcccccccccCCCCC--hhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhh
Q 044206 42 KREAPEARGSWPVIGHLHLLGGPEP--SHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLA 119 (245)
Q Consensus 42 ~~~~p~~~~~~p~lG~~~~~~~~~~--~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~ 119 (245)
.+.+|||+ ++|++|+++.+.. .. ++..+.+++++||||+++++|+.++++++||+.+++++.+++..|++++....
T Consensus 11 ~~lpPgP~-~~p~~G~~~~~~~-~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~~~ 88 (481)
T 3czh_A 11 MGFPPGPP-GLPFIGNIYSLAA-SSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPL 88 (481)
T ss_dssp -CCCCCCC-CBTTTBHHHHHHH-CSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCCHH
T ss_pred CCCCCCCC-CCcccccHhhcCc-ccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCcHH
Confidence 34556655 8999999987752 22 78899999999999999999999999999999999999877777887765433
Q ss_pred HHHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhh--hhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHH
Q 044206 120 MEILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRL--GKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFT 197 (245)
Q Consensus 120 ~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~ 197 (245)
......+ .++++..+|+.|+++||+++++ |+...+ ..+.+.+.++++++++.+. +.. ++++|+.+++.
T Consensus 89 ~~~~~~~-~~~~~~~~g~~w~~~R~~~~~~-f~~~~~~~~~~~~~i~~~~~~l~~~l~------~~~--~~~~d~~~~~~ 158 (481)
T 3czh_A 89 FMKMTKM-GGLLNSRYGRGWVDHRRLAVNS-FRYFGYGQKSFESKILEETKFFNDAIE------TYK--GRPFDFKQLIT 158 (481)
T ss_dssp HHHHHTT-CSSTTCCSSHHHHHHHHHHHHH-HHHTTTTSTTHHHHHHHHHHHHHHHHH------TTT--TCCBCCHHHHH
T ss_pred HHhhcCC-CCeEeCCCChHHHHHHHHHHHH-HHHhcCChHHHHHHHHHHHHHHHHHHH------HcC--CCCcCHHHHHH
Confidence 3333322 2445555699999999999987 776544 5788999999999998883 222 34799999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCh--HHHHHHHHHHhh
Q 044206 198 DTIRNVVLRMIVGKGCDSVDG--EEWIELLTRFSE 230 (245)
Q Consensus 198 ~~~~~vi~~~~fG~~~~~~~~--~~~~~~~~~~~~ 230 (245)
.+++|++++++||.+++.++. .++.+.+.+...
T Consensus 159 ~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~ 193 (481)
T 3czh_A 159 NAVSNITNLIIFGERFTYEDTDFQHMIELFSENVE 193 (481)
T ss_dssp HHHHHHHHHHHHSSCCCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999998865332 233344444444
No 10
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=99.93 E-value=1.2e-25 Score=184.24 Aligned_cols=186 Identities=16% Similarity=0.215 Sum_probs=146.6
Q ss_pred cccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhC-CeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhH
Q 044206 42 KREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYG-PIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAM 120 (245)
Q Consensus 42 ~~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG-~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~ 120 (245)
.+.||++|.++|++||++.+. .+++.++.+++++|| ++|++++++.++++++||+++++++.+++..|++++.....
T Consensus 2 ~~~PPg~p~~~P~iG~~~~~~--~~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~ 79 (450)
T 3gw9_A 2 GKLPPVYPVTVPILGHIIQFG--KSPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFM 79 (450)
T ss_dssp CSCCCBCCCCSTTTBTHHHHH--HCHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGGG
T ss_pred CCCCCCCCCCcchhccHHHHc--cCHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHHH
Confidence 457788887799999999887 678999999999999 99999999999999999999999998877778777644332
Q ss_pred -HHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHH-HHHHhhhhhccCCCcccchhHHHHHH
Q 044206 121 -EILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLK-DLYELWDKNKSTNKMLLVEMKRWFTD 198 (245)
Q Consensus 121 -~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~d~~~~~~~ 198 (245)
..++ .++++..+|+.|+++||++.++ |+..+++.+.+.+.++++++++ .+ .+ . +..+|+.+++..
T Consensus 80 ~~~~g---~~~~~~~~~~~~~~~R~~~~~~-f~~~~l~~~~~~i~~~~~~ll~~~~------~~-~--~~~vd~~~~~~~ 146 (450)
T 3gw9_A 80 VPVFG---EGVAYAAPYPRMREQLNFLAEE-LTIAKFQNFVPAIQHEVRKFMAANW------DK-D--EGEINLLEDCST 146 (450)
T ss_dssp HHHHC---TTSGGGSCHHHHHHHHHHHHHT-TSGGGCTTHHHHHHHHHHHHHHHHS------CS-S--EEEEEHHHHHHH
T ss_pred HHHhc---CCcccCCCcHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHh------cc-C--CCcccHHHHHHH
Confidence 2333 2455555699999999999986 8999999999999999998888 55 22 1 347899999999
Q ss_pred HHHHHHHHHHhcCCCCC-CChHHHHHHHHHHhhcccCcccccccccC
Q 044206 199 TIRNVVLRMIVGKGCDS-VDGEEWIELLTRFSEMSGKFVVSDALPFL 244 (245)
Q Consensus 199 ~~~~vi~~~~fG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~P~l 244 (245)
+++|++++++||.+++. .+..++.+.+..+...... ...++||+
T Consensus 147 ~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~P~l 191 (450)
T 3gw9_A 147 MIINTACQCLFGEDLRKRLDARRFAQLLAKMESSLIP--AAVFLPIL 191 (450)
T ss_dssp HHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHTCCG--GGGTCGGG
T ss_pred HHHHHHHHHHcCcchhhhhhhHHHHHHHHHHHhcccc--chhcccch
Confidence 99999999999988764 2345666666665443322 23355644
No 11
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=99.93 E-value=2.3e-24 Score=177.97 Aligned_cols=163 Identities=22% Similarity=0.295 Sum_probs=128.7
Q ss_pred ccccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhH
Q 044206 41 KKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAM 120 (245)
Q Consensus 41 ~~~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~ 120 (245)
+.+.||||+ ++|++||++++.. .+++..+.+|+++||+|+++++|+.++++++||+.+++++.+++..|++++.....
T Consensus 8 ~~~lpPgP~-~~PliG~~~~~~~-~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~~~ 85 (476)
T 3e6i_A 8 KGKLPPGPF-PLPIIGNLFQLEL-KNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPAF 85 (476)
T ss_dssp --CCCCCCC-CBTTTBTGGGCCT-TCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCGGG
T ss_pred CCCCCcCCC-CcccccChhhhcc-ccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCchh
Confidence 445566655 8999999998843 67899999999999999999999999999999999999998877788877654433
Q ss_pred HHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhh--hhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHHH
Q 044206 121 EILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRL--GKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTD 198 (245)
Q Consensus 121 ~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~ 198 (245)
.....+ ++++. +|+.|+++||+..+. |+...+ ..+.+.+.++++++++.+. ... +.++|+.+++..
T Consensus 86 ~~~~~~--~l~~~-~g~~w~~~Rr~~~~~-l~~~~~~~~~~~~~i~~~~~~l~~~l~------~~~--~~~~d~~~~~~~ 153 (476)
T 3e6i_A 86 HAHRDR--GIIFN-NGPTWKDIRRFSLTT-LRNYGMGKQGNESRIQREAHFLLEALR------KTQ--GQPFDPTFLIGC 153 (476)
T ss_dssp GGGTTS--SSTTC-CSTTHHHHHHHHHHH-HHHTC-CCSHHHHHHHHHHHHHHHHHH------TTT--TSCBCTHHHHTH
T ss_pred heecCC--CEEec-CCcHHHHHHHHHHHH-HHhcCCCchHHHHHHHHHHHHHHHHHH------HhC--CCCcChHHHHHH
Confidence 333222 55555 499999999999876 565444 3467888888888888883 222 447999999999
Q ss_pred HHHHHHHHHHhcCCCCCCC
Q 044206 199 TIRNVVLRMIVGKGCDSVD 217 (245)
Q Consensus 199 ~~~~vi~~~~fG~~~~~~~ 217 (245)
+++|+++.++||.+++..+
T Consensus 154 ~~~dvi~~~~fG~~~~~~~ 172 (476)
T 3e6i_A 154 APCNVIADILFRKHFDYND 172 (476)
T ss_dssp HHHHHHHHHHHSCCCCTTC
T ss_pred HHHHHHHHHHcCCCCCCCC
Confidence 9999999999999997654
No 12
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=99.93 E-value=1.3e-24 Score=179.52 Aligned_cols=164 Identities=21% Similarity=0.330 Sum_probs=131.4
Q ss_pred ccccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhH
Q 044206 41 KKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAM 120 (245)
Q Consensus 41 ~~~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~ 120 (245)
+.+.+|||+ ++|++|+++.+.. ++++..+.+++++||||+++++++.+.++++||+.+++|+.+++..|++++.....
T Consensus 8 ~~~~pPgP~-~~p~iG~~~~~~~-~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~ 85 (476)
T 2fdv_A 8 KGKLPPGPT-PLPFIGNYLQLNT-EQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATF 85 (476)
T ss_dssp CCBCCCCCC-CBTTTBTGGGCCT-TBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHH
T ss_pred cCCCCCCCC-CCcccccHhhcCC-cchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHH
Confidence 334566654 7999999998842 67889999999999999999999999999999999999997766678766543322
Q ss_pred HHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhh--hhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHHH
Q 044206 121 EILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRL--GKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTD 198 (245)
Q Consensus 121 ~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~ 198 (245)
.....+ .++++. +|+.|+++||++.++ |+...+ +.+.+.+.++++++++.+.+ .. +.++|+.+++..
T Consensus 86 ~~~~~~-~~l~~~-~g~~~~~~Rr~~~~~-f~~~~~~~~~~~~~i~~~~~~l~~~l~~------~~--~~~vd~~~~~~~ 154 (476)
T 2fdv_A 86 DWVFKG-YGVVFS-NGERAKQLRRFSIAT-LRDFGVGKRGIEERIQEEAGFLIDALRG------TG--GANIDPTFFLSR 154 (476)
T ss_dssp HHHHTT-CSSSSC-CHHHHHHHHHHHHHH-HHHTTTTSHHHHHHHHHHHHHHHHHHHH------TT--TCCBCCHHHHHH
T ss_pred hhhcCC-CCeEec-CchHHHHHHHHHHHH-HHHhCCChhhHHHHHHHHHHHHHHHHHh------cC--CCccChHHHHHH
Confidence 222222 356555 599999999999986 787766 78899999999999998832 22 347999999999
Q ss_pred HHHHHHHHHHhcCCCCCCC
Q 044206 199 TIRNVVLRMIVGKGCDSVD 217 (245)
Q Consensus 199 ~~~~vi~~~~fG~~~~~~~ 217 (245)
+++|++++++||.+++.++
T Consensus 155 ~~~~vi~~~~fG~~~~~~~ 173 (476)
T 2fdv_A 155 TVSNVISSIVFGDRFDYKD 173 (476)
T ss_dssp HHHHHHHHHHHSSCCCTTC
T ss_pred HHHHHHHHHHcCCcCCCCC
Confidence 9999999999999887543
No 13
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=99.92 E-value=6.7e-26 Score=186.52 Aligned_cols=178 Identities=14% Similarity=0.129 Sum_probs=141.6
Q ss_pred ccccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhH
Q 044206 41 KKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAM 120 (245)
Q Consensus 41 ~~~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~ 120 (245)
..+.||++++++|++||++++. .+++.++.+++++|||||+++++++++|+++||+++++++.+++..|.+++.....
T Consensus 9 g~~~PP~~~~~lP~iG~~~~~~--~~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~ 86 (461)
T 3ld6_A 9 GVKSPPYIFSPIPFLGHAIAFG--KSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRL 86 (461)
T ss_dssp -CCCCCBCCCSSTTTBTHHHHH--HCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHH
T ss_pred CCCCCCCCCCCcCeeeeHHHhh--hCHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhh
Confidence 3456777776799999999987 68999999999999999999999999999999999999998887778776543222
Q ss_pred HHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHHHHH
Q 044206 121 EILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDTI 200 (245)
Q Consensus 121 ~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~ 200 (245)
.....+ .+++++.+|+.|+++|+++.++ |+..+++.+.+.+.++++++++.+ .+. ..+|+.+.+..++
T Consensus 87 ~~~~~g-~~~~~~~~~~~~~~~R~~~~~~-f~~~~l~~~~~~i~~~~~~~~~~~------~~~----~~~~~~~~~~~~~ 154 (461)
T 3ld6_A 87 TTPVFG-KGVAYDVPNPVFLEQKKMLKSG-LNIAHFKQHVSIIEKETKEYFESW------GES----GEKNVFEALSELI 154 (461)
T ss_dssp HHHHHC-TTSGGGSCHHHHHHHHHHHHHH-SSHHHHHHHHHHHHHHHHHHGGGG------CSE----EEEEHHHHHHHHH
T ss_pred hhccCC-CccccCCCcHHHHHHHHhcccc-ccHHHHhhhhHHHHHHHHHHHHHH------hhc----CCccHHHHHHHHH
Confidence 111112 3555666799999999999986 899999999999999888887777 333 2689999999999
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHHHHhhcc
Q 044206 201 RNVVLRMIVGKGCDSVDGEEWIELLTRFSEMS 232 (245)
Q Consensus 201 ~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~ 232 (245)
+++++.++||.+++....+++.+....+...+
T Consensus 155 ~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~ 186 (461)
T 3ld6_A 155 ILTASHCLHGKEIRSQLNEKVAQLYADLDGGF 186 (461)
T ss_dssp HHHHHHHHTCHHHHHTCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCcchhhhhhhhhhhhhhhhhhhh
Confidence 99999999998876544455666555554433
No 14
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=99.92 E-value=5e-24 Score=176.06 Aligned_cols=172 Identities=19% Similarity=0.339 Sum_probs=133.3
Q ss_pred cccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhHH
Q 044206 42 KREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAME 121 (245)
Q Consensus 42 ~~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~~ 121 (245)
.+.+|||+ ++|++|+++.+.. ++++..+.+++++|||++++++|+.+.++++||+.+++|+.+++..|.+++......
T Consensus 9 ~~~pPgP~-~~p~iG~~~~~~~-~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~ 86 (476)
T 1po5_A 9 GKLPPGPS-PLPVLGNLLQMDR-KGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVD 86 (476)
T ss_dssp CCCCCCSC-CBTTTBTGGGCCT-TCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGGC
T ss_pred CCCCcCCC-CCCccccHHhccC-CcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHHH
Confidence 34566665 7999999998832 678999999999999999999999999999999999999977666787665432222
Q ss_pred HhhcCCcceeeccCCcchHHHHHHHHHhhhhhh--hhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHHHH
Q 044206 122 ILGYNFSMFGFSPYGSYWREIRKIATLELLSNH--RLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDT 199 (245)
Q Consensus 122 ~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~ 199 (245)
....+ .+++++ +|+.|+++||++.++ |++. .++.+.+.+.++++++++.+.+ .. +.++|+.+++..+
T Consensus 87 ~~~~~-~~l~~~-~g~~w~~~Rr~~~~~-f~~~~~~~~~~~~~i~~~~~~l~~~l~~------~~--~~~~d~~~~~~~~ 155 (476)
T 1po5_A 87 PIFQG-YGVIFA-NGERWRALRRFSLAT-MRDFGMGKRSVEERIQEEARCLVEELRK------SK--GALLDNTLLFHSI 155 (476)
T ss_dssp SCCSS-CCCCCS-SHHHHHHHHHHHHHH-HHHSCCCHHHHHHHHHHHHHHHHHHHHH------TT--TCCBCCHHHHHHH
T ss_pred hhcCC-CceEec-CCcHHHHHHHHHHHH-HHHhCCChhHHHHHHHHHHHHHHHHHHh------cC--CCccCHHHHHHHH
Confidence 11222 355555 599999999999986 7776 4577889999999999999842 22 3479999999999
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 044206 200 IRNVVLRMIVGKGCDSVDGEEWIELLTR 227 (245)
Q Consensus 200 ~~~vi~~~~fG~~~~~~~~~~~~~~~~~ 227 (245)
++|++++++||.+++.++. ++.+..+.
T Consensus 156 ~~~vi~~~~fG~~~~~~~~-~~~~~~~~ 182 (476)
T 1po5_A 156 TSNIICSIVFGKRFDYKDP-VFLRLLDL 182 (476)
T ss_dssp HHHHHHHHHHSSCCCTTCH-HHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCH-HHHHHHHH
Confidence 9999999999998875442 44444433
No 15
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=99.92 E-value=1.4e-24 Score=179.32 Aligned_cols=163 Identities=23% Similarity=0.332 Sum_probs=123.2
Q ss_pred cccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhHH
Q 044206 42 KREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAME 121 (245)
Q Consensus 42 ~~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~~ 121 (245)
.+.+|||+ ++|++|+++.+.. ++++..+.+++++||||+++++|+.+.++++||+.+++|+.+++..|.+++......
T Consensus 10 ~~~pPgP~-~~p~iG~~~~~~~-~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~~~~~ 87 (477)
T 1r9o_A 10 GKLPPGPT-PLPVIGNILQIGI-KDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAE 87 (477)
T ss_dssp CBCCCCSS-SCC-----CCBCH-HHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCSCCC
T ss_pred CCCCCCCC-CCceeccHhhcCC-CChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcchhhh
Confidence 34566665 7999999988732 568889999999999999999999899999999999999977666777655322111
Q ss_pred HhhcCCcceeeccCCcchHHHHHHHHHhhhhhh--hhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHHHH
Q 044206 122 ILGYNFSMFGFSPYGSYWREIRKIATLELLSNH--RLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDT 199 (245)
Q Consensus 122 ~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~ 199 (245)
....+ .++++. +|+.|+++||++.++ |++. .++.+.+.+.++++++++.+. +.. +.++|+.+++..+
T Consensus 88 ~~~~~-~~l~~~-~g~~w~~~Rr~~~~~-~~~~~~~~~~~~~~i~~~~~~l~~~l~------~~~--~~~vd~~~~~~~~ 156 (477)
T 1r9o_A 88 RANRG-FGIVFS-NGKKWKEIRRFSLMT-LRNFGMGKRSIEDRVQEEARCLVEELR------KTK--ASPCDPTFILGCA 156 (477)
T ss_dssp TTTCT-TSSTTC-CHHHHHHHHHHHHHH-HTTSSSCSSCHHHHHHHHHHHHHHHHH------TTT--TSCBCTHHHHHHH
T ss_pred hccCC-CceEec-CChHHHHHHHHHHHH-HHHhCCChHHHHHHHHHHHHHHHHHHH------hcC--CCccChHHHHHHH
Confidence 11122 355555 599999999999986 7776 456788999999999999983 222 3479999999999
Q ss_pred HHHHHHHHHhcCCCCCCC
Q 044206 200 IRNVVLRMIVGKGCDSVD 217 (245)
Q Consensus 200 ~~~vi~~~~fG~~~~~~~ 217 (245)
++|++++++||.+++.++
T Consensus 157 ~~~vi~~~~fG~~~~~~~ 174 (477)
T 1r9o_A 157 PCNVICSIIFHKRFDYKD 174 (477)
T ss_dssp HHHHHHHHHHSCCCCTTC
T ss_pred HHHHHHHHHccCcCCCCC
Confidence 999999999999887644
No 16
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=99.91 E-value=1.5e-23 Score=173.52 Aligned_cols=172 Identities=13% Similarity=0.049 Sum_probs=133.5
Q ss_pred hccccccCCCCCCCCcccccccccC---CCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCC
Q 044206 38 TSKKKREAPEARGSWPVIGHLHLLG---GPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASR 114 (245)
Q Consensus 38 ~~~~~~~~p~~~~~~p~lG~~~~~~---~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~ 114 (245)
..++.+.+|||+ +.|+. +++.+. ..++.+..+.+++++||||+++++|+.+.|+++||+++++|+.++ ..|+++
T Consensus 4 ~~~pL~~~PGP~-~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~f~~r 80 (487)
T 3n9y_A 4 SPRPFNEIPSPG-DNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSE-GPNPER 80 (487)
T ss_dssp CCBCGGGSCCSC-SCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTC-CSSCCC
T ss_pred CCCCHhhCCCCC-CCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhC-CCCCCC
Confidence 345777889887 55654 665542 114678889999999999999999999999999999999999765 467777
Q ss_pred CChhhH---HHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccch
Q 044206 115 PKTLAM---EILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVE 191 (245)
Q Consensus 115 ~~~~~~---~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d 191 (245)
+..... ........+++ ..+|+.|+++||++++++|+.++++.+.+.+.++++++++.|.+........ +.++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~-~~~g~~w~~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~--~~~vd 157 (487)
T 3n9y_A 81 FLIPPWVAYHQYYQRPIGVL-LKKSAAWKKDRVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSG--NYSGD 157 (487)
T ss_dssp CCCHHHHHHHHHTTCCCCGG-GCCHHHHHHHHHHHHHHHTSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSS--SEEEC
T ss_pred CCCcHHHHHHHHccccCCCc-cCCcHHHHHHHHhcCcccCCchHHHHhhhHHHHHHHHHHHHHHHHhcccccC--CCCcc
Confidence 653321 11222223444 4569999999999998778999999999999999999999996644322222 45799
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCC
Q 044206 192 MKRWFTDTIRNVVLRMIVGKGCDS 215 (245)
Q Consensus 192 ~~~~~~~~~~~vi~~~~fG~~~~~ 215 (245)
+.+++..+++|++++++||.+++.
T Consensus 158 ~~~~~~~~t~dvi~~~~fG~~~~~ 181 (487)
T 3n9y_A 158 ISDDLFRFAFESITNVIFGERQGM 181 (487)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred HHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999865
No 17
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.90 E-value=2e-23 Score=171.47 Aligned_cols=170 Identities=13% Similarity=0.153 Sum_probs=120.4
Q ss_pred ccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhH-H
Q 044206 43 REAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAM-E 121 (245)
Q Consensus 43 ~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~-~ 121 (245)
+.||++|.++|++|++..+. .+++..+.+++++||||+++++++.++++++||+.+++++.+++..|++++..... .
T Consensus 4 ~~PPg~p~~~P~iG~~~~~~--~~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~~~~~~ 81 (455)
T 2cib_A 4 VALPRVSGGHDEHGHLEEFR--TDPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTP 81 (455)
T ss_dssp -CCCBCSCCCBTTBTHHHHT--TCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGHH
T ss_pred CCCCCCCCCCCCccCHHHHh--hChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccchhHHHh
Confidence 45677566899999999886 67899999999999999999999999999999999999997666667766543222 2
Q ss_pred HhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHHHHHH
Q 044206 122 ILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDTIR 201 (245)
Q Consensus 122 ~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~ 201 (245)
..+ .++ .. +|+.|+++|++++++ |++++++.+.+.+.++++++++.+ .. +..+|+.+++..+++
T Consensus 82 ~~g---~~~-~~-~~~~~~~~R~~~~~~-f~~~~l~~~~~~i~~~~~~l~~~~------~~----~~~vd~~~~~~~~~~ 145 (455)
T 2cib_A 82 IFG---EGV-VF-DASPERRKEMLHNAA-LRGEQMKGHAATIEDQVRRMIADW------GE----AGEIDLLDFFAELTI 145 (455)
T ss_dssp HHC--------------------------CCHHHHHHHHHHHHHHHHHHHTTC------CS----EEEEEHHHHHHHHHH
T ss_pred hcC---Ccc-cc-CcHHHHHHHhhhccc-cCHHHHHHHHHHHHHHHHHHHHHh------CC----CCcEeHHHHHHHHHH
Confidence 222 133 33 489999999999986 899999999999999998888776 32 237999999999999
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHHHHhh
Q 044206 202 NVVLRMIVGKGCDSVDGEEWIELLTRFSE 230 (245)
Q Consensus 202 ~vi~~~~fG~~~~~~~~~~~~~~~~~~~~ 230 (245)
|++++++||.+++....+++.+.+..+..
T Consensus 146 ~vi~~~~fG~~~~~~~~~~~~~~~~~~~~ 174 (455)
T 2cib_A 146 YTSSACLIGKKFRDQLDGRFAKLYHELER 174 (455)
T ss_dssp HHHHHHHTCHHHHTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcchhhhHHHHHHHHHHHh
Confidence 99999999998765333567777666644
No 18
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.90 E-value=1.6e-23 Score=171.53 Aligned_cols=176 Identities=15% Similarity=0.123 Sum_probs=131.4
Q ss_pred hhhhccccccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCC
Q 044206 35 SKYTSKKKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASR 114 (245)
Q Consensus 35 ~~~~~~~~~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~ 114 (245)
+..+.++.+.+|||+ ++|++|+++.+. .++. ++.+++++|||+++++++|.+.++++||+.+++++.+++..|+.+
T Consensus 4 yp~~~~~~~~pPgp~-~~P~iG~~~~~~--~~~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~ 79 (444)
T 2ve3_A 4 SPTNLNSLPIPPGDF-GLPWLGETLNFL--NDGD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQAT 79 (444)
T ss_dssp -----CCCCCCCCCC-CBTTTBTHHHHH--HCTT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEE
T ss_pred CCCCCCCCCCCCCCC-CCCccccHHHHh--cCcH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccc
Confidence 344556667777776 899999998875 3455 778999999999999988889999999999999997665556643
Q ss_pred CChhhHHHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHH
Q 044206 115 PKTLAMEILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKR 194 (245)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~ 194 (245)
.........+ ..+++. .+|+.|+++|++++++ |++++++.+.+.+.++++++++.| .. ++++|+.+
T Consensus 80 ~~~~~~~~~g--~~~l~~-~~g~~~~~~R~~~~~~-f~~~~l~~~~~~i~~~~~~l~~~l------~~----~~~vd~~~ 145 (444)
T 2ve3_A 80 WPLSTRILLG--PNALAT-QMGEIHRSRRKILYQA-FLPRTLDSYLPKMDGIVQGYLEQW------GK----ANEVIWYP 145 (444)
T ss_dssp CCHHHHHHHC--TTSGGG-CCHHHHHHHHHHHHGG-GCHHHHHTTHHHHHHHHHHHHHHH------HH----SSEEEHHH
T ss_pred hhHHHHHHhC--cccccc-CCchHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHh------cC----CCcEeHHH
Confidence 3222223333 224544 4599999999999986 899999999999999999999998 32 22799999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhh
Q 044206 195 WFTDTIRNVVLRMIVGKGCDSVDGEEWIELLTRFSE 230 (245)
Q Consensus 195 ~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~ 230 (245)
++..+++|++++++|| +.+.++ +++.+.+..+..
T Consensus 146 ~~~~~~~~vi~~~~fG-~~~~~~-~~~~~~~~~~~~ 179 (444)
T 2ve3_A 146 QLRRMTFDVAATLFMG-EKVSQN-PQLFPWFETYIQ 179 (444)
T ss_dssp HHHHHHHHHHHHHHTC-HHHHSC-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCcccH-HHHHHHHHHHHH
Confidence 9999999999999999 333222 344555444433
No 19
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.90 E-value=9.9e-24 Score=173.55 Aligned_cols=175 Identities=15% Similarity=0.160 Sum_probs=136.0
Q ss_pred ccccccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChh
Q 044206 39 SKKKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTL 118 (245)
Q Consensus 39 ~~~~~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~ 118 (245)
.+..+.||++|.++|++||++.+. .+++.++.+++++|||||++++++++.+++++|+.+++++.++...+.+++...
T Consensus 7 ~~~~~~PPg~P~~lP~iG~l~~~~--~~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~ 84 (461)
T 3i3k_A 7 PAGVKSPPYIFSPIPFLGHAIAFG--KSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYS 84 (461)
T ss_dssp ---CCCCCBCCCSSTTTBTHHHHH--HCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHH
T ss_pred CCCCCCCCCCCCCCCccccHHhhc--cCHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccchHHH
Confidence 345567777566899999999887 678999999999999999999999999999999999999987766665433211
Q ss_pred -h-HHHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHH
Q 044206 119 -A-MEILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWF 196 (245)
Q Consensus 119 -~-~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~ 196 (245)
. ...++ .++.+..+|+.|+++||++.+. |+..+++.+.+.+.+++.++++.| .+. ..+|+.+.+
T Consensus 85 ~~~~~~~g---~g~~~~~~g~~w~~~Rr~~~~~-f~~~~l~~~~~~~~~~~~~ll~~l------~~~----~~~dl~~~~ 150 (461)
T 3i3k_A 85 RLTTPVFG---KGVAYDVPNPVFLEQKKMLKSG-LNIAHFKQHVSIIEKETKEYFESW------GES----GEKNVFEAL 150 (461)
T ss_dssp HHHHHHHC---TTSGGGSCHHHHHHHHHHHHHH-SSHHHHHHHHHHHHHHHHHHGGGG------CSE----EEEEHHHHH
T ss_pred HhhhhhcC---CeeeeCCCcHHHHHHHHHHhhh-hCHHHHHHHHHHHHHHHHHHHHHh------hhc----CCcCHHHHH
Confidence 1 12222 3555665699999999999986 899999999999999998888877 332 258999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHh
Q 044206 197 TDTIRNVVLRMIVGKGCDSVDGEEWIELLTRFS 229 (245)
Q Consensus 197 ~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~ 229 (245)
..++++++++++||.++.....+.+.+.+..+.
T Consensus 151 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 183 (461)
T 3i3k_A 151 SELIILTASHCLHGKEIRSQLNEKVAQLYADLD 183 (461)
T ss_dssp HHHHHHHHHHHHTCHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHhhhhHHHHHHHHHHHHHH
Confidence 999999999999998765433345555555443
No 20
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.90 E-value=2.3e-22 Score=165.78 Aligned_cols=174 Identities=16% Similarity=0.123 Sum_probs=130.9
Q ss_pred ccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhHHH
Q 044206 43 REAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAMEI 122 (245)
Q Consensus 43 ~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~~~ 122 (245)
+.+|||+ ++|++|+++.+.. ++++..+.+++++||||+++++++.+.++++||+.+++++.+ ..|.+.+.......
T Consensus 3 ~~~PGP~-~~p~iG~l~~~~~-~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~--~~f~~~~~~~~~~~ 78 (470)
T 2ij2_A 3 KEMPQPK-TFGELKNLPLLNT-DKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDE--SRFDKNLSQALKFV 78 (470)
T ss_dssp CCCCCCC-CCGGGTTGGGGCS-SCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCT--TTEEECCCHHHHHH
T ss_pred CCCCCCC-CCCccccHHHHhc-ccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhh--cCcCcCchhHHHHH
Confidence 4678776 7999999998853 578888999999999999999999999999999999999953 23533222111111
Q ss_pred hhcCCcceeec-cCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHHHHHH
Q 044206 123 LGYNFSMFGFS-PYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDTIR 201 (245)
Q Consensus 123 ~~~~~~~~~~~-~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~ 201 (245)
......+++.. .+|+.|+++||+++++ |++.+++.+.+.+.++++++++.+. ... .+.++|+.+++..+++
T Consensus 79 ~~~~~~~l~~~~~~g~~w~~~Rr~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~------~~~-~~~~vd~~~~~~~~~~ 150 (470)
T 2ij2_A 79 RDFAGDGLFTSWTHEKNWKKAHNILLPS-FSQQAMKGYHAMMVDIAVQLVQKWE------RLN-ADEHIEVPEDMTRLTL 150 (470)
T ss_dssp HHHHTTSGGGSCTTSHHHHHHHHHHGGG-GSTTTHHHHHHHHHHHHHHHHHHHH------TCC-TTCCEEHHHHHHHHHH
T ss_pred HHhcCCceEEcCCCchHHHHHHHHhccc-cCHHHHHHHHHHHHHHHHHHHHHHH------hhC-CCCeEEHHHHHHHHHH
Confidence 11111345444 4699999999999986 8999999999999999999998883 211 1347999999999999
Q ss_pred HHHHHHHhcCCCCC---CChHHHHHHHHHH
Q 044206 202 NVVLRMIVGKGCDS---VDGEEWIELLTRF 228 (245)
Q Consensus 202 ~vi~~~~fG~~~~~---~~~~~~~~~~~~~ 228 (245)
|+++.++||.+++. ++..++.+.+...
T Consensus 151 ~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~ 180 (470)
T 2ij2_A 151 DTIGLCGFNYRFNSFYRDQPHPFITSMVRA 180 (470)
T ss_dssp HHHHHHHHSCCCCGGGCSSCCHHHHHHHHH
T ss_pred HHHHHHHcCCcccccccCCCCHHHHHHHHH
Confidence 99999999998764 2223444444443
No 21
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.88 E-value=1.1e-22 Score=167.54 Aligned_cols=171 Identities=18% Similarity=0.143 Sum_probs=119.7
Q ss_pred ccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccc-cCCCChhhHH
Q 044206 43 REAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVF-ASRPKTLAME 121 (245)
Q Consensus 43 ~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~-~~~~~~~~~~ 121 (245)
+.+|++|.++|++|+++.+. .+++.++.++++ ||||+++++++.++++++||+.+++++.++ .| .+++......
T Consensus 22 ~eppPgP~~~P~iG~~~~~~--~~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~~~~~~~~~ 96 (467)
T 3dbg_A 22 REPPVAGGGVPLLGHGWRLA--RDPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIAGPLWESLE 96 (467)
T ss_dssp CBCCEECCCCSTTHHHHHHH--HCHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC-----------
T ss_pred CCCCCCCCCCCcccchHHhc--cCHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--CcccccchHHHHH
Confidence 45565666899999999887 688999999988 999999999999999999999999999765 45 3332221111
Q ss_pred HhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHHHHHH
Q 044206 122 ILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDTIR 201 (245)
Q Consensus 122 ~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~ 201 (245)
... +..+++. .+|+.|+++||++++. |++++++.+.+.+.++++++++.+ .. +.++|+.+++..+++
T Consensus 97 ~~~-g~~~l~~-~dg~~h~~~R~~l~~~-fs~~~l~~~~~~i~~~~~~l~~~l------~~----~~~~d~~~~~~~~~~ 163 (467)
T 3dbg_A 97 GLL-GKEGVAT-ANGPLHRRQRRTIQPA-FRLDAIPAYGPIMEEEAHALTERW------QP----GKTVDATSESFRVAV 163 (467)
T ss_dssp ---------------------CGGGHHH-HSTTTSTTTHHHHHHHHHHHHHHS------CT----TSCEEHHHHHHHHHH
T ss_pred Hhc-CCCCccc-CCcHHHHHHHHHhhhh-hCHHHHHHHHHHHHHHHHHHHHHh------cc----CCcCcHHHHHHHHHH
Confidence 111 2124544 4599999999999986 899999999999999999999888 33 237999999999999
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHHHHhhc
Q 044206 202 NVVLRMIVGKGCDSVDGEEWIELLTRFSEM 231 (245)
Q Consensus 202 ~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~ 231 (245)
++++.++||.+++.+..+++.+.+..+...
T Consensus 164 ~vi~~~~~g~~~~~~~~~~~~~~~~~~~~~ 193 (467)
T 3dbg_A 164 RVAARCLLRGQYMDERAERLCVALATVFRG 193 (467)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCcccchhHHHHHHHHHHHHHH
Confidence 999999999988653344566666655443
No 22
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.87 E-value=7.1e-22 Score=163.74 Aligned_cols=167 Identities=16% Similarity=0.106 Sum_probs=127.7
Q ss_pred cccccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCc-cccCCCChh
Q 044206 40 KKKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDK-VFASRPKTL 118 (245)
Q Consensus 40 ~~~~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~-~~~~~~~~~ 118 (245)
++.+.||+|++++|++||++.+. .+++.++.+++++||||+++++++.++++++||+.+++++.++.. .+..++...
T Consensus 10 ~~~~~PPgp~~~lPliG~~~~~~--~~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~~~~~~~~~~~~ 87 (491)
T 3v8d_A 10 RQTGEPPLENGLIPYLGCALQFG--ANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFAL 87 (491)
T ss_dssp CCTTSCCEEEEEESSTTTTGGGT--CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCTTEESSHHHHHH
T ss_pred cCCCCCCCCCCCcceeccHHHHh--cCHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCCccchHHHHHHH
Confidence 34566777773379999999997 789999999999999999999999999999999999999955431 233322223
Q ss_pred hHHHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHHH
Q 044206 119 AMEILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTD 198 (245)
Q Consensus 119 ~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~ 198 (245)
....++.+ .....+|+.|+++|+.+.+. |++++++.+.+.+.+++.++++.+... ......+...++.+++..
T Consensus 88 ~~~~~g~~---~~~~~~g~~~~~~Rr~~~~~-f~~~~l~~~~~~i~~~~~~ll~~~~~~---~~~~~~~~~~~l~~~~~~ 160 (491)
T 3v8d_A 88 SAKAFGHR---SIDPMDGNTTENINDTFIKT-LQGHALNSLTESMMENLQRIMRPPVSS---NSKTAAWVTEGMYSFCYR 160 (491)
T ss_dssp HHHHHTCC---CCCGGGSSBCCCHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHSCCSSC---GGGGCSCEEEEHHHHHHH
T ss_pred HHHhcCCc---ccccccchhHHHHHHHHHHH-cCccchHHHHHHHHHHHHHHHHhhhhc---ccCCCCCcccCHHHHHHH
Confidence 33444432 22334599999999999985 899999999999999888877755221 111112346899999999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 044206 199 TIRNVVLRMIVGKGCDS 215 (245)
Q Consensus 199 ~~~~vi~~~~fG~~~~~ 215 (245)
+++++++.++||.+...
T Consensus 161 ~~~~~~~~~~fG~~~~~ 177 (491)
T 3v8d_A 161 VMFEAGYLTIFGRDLTR 177 (491)
T ss_dssp HHHHHHHHHHHCBCCSC
T ss_pred HHHHHHHHHHcCccccc
Confidence 99999999999998764
No 23
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=99.85 E-value=5.1e-21 Score=156.28 Aligned_cols=172 Identities=11% Similarity=0.111 Sum_probs=120.6
Q ss_pred hccccccCCCCCCCCccccccc-ccCCCCChhHHHHHHHHHhCCeeEEEe-CCeeEEEEcCHHHHHHHHhhCCccccCCC
Q 044206 38 TSKKKREAPEARGSWPVIGHLH-LLGGPEPSHWVLGKMADEYGPIFKIKM-GINRALVVSNWEMAKECLTTHDKVFASRP 115 (245)
Q Consensus 38 ~~~~~~~~p~~~~~~p~lG~~~-~~~~~~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~~~~p~~~~~il~~~~~~~~~~~ 115 (245)
.++.++.+|+|+ ++|++|++. .+. .+++..+.++ ++||||+++++ ++.+.++++||+.+++++.++ .|++++
T Consensus 21 ~~~~~~~~PGP~-~~p~lG~~~~~~~--~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~ 94 (436)
T 2cd8_A 21 MRRTQQGTTASP-PVLDLGALGQDFA--ADPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDW 94 (436)
T ss_dssp --------------CCBHHHHHHHHH--HCCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCG
T ss_pred cchhccCCCCCC-ccccCCCCCcccc--cChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCcccc
Confidence 344556778877 899999976 444 5788899999 89999999998 778899999999999999765 576664
Q ss_pred ChhhHHH----hhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccch
Q 044206 116 KTLAMEI----LGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVE 191 (245)
Q Consensus 116 ~~~~~~~----~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d 191 (245)
....... ...+ .+++. .+|+.|+++||++++. |++.+++.+.+.+.++++++++.|. +.. +.++|
T Consensus 95 ~~~~~~~~~~~~~~~-~~l~~-~dg~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~------~~~--~~~vd 163 (436)
T 2cd8_A 95 RNSTTPLTEAEAALN-HNMLE-SDPPRHTRLRKLVARE-FTMRRVELLRPRVQEIVDGLVDAML------AAP--DGRAD 163 (436)
T ss_dssp GGCSSCCCTTGGGTC-CSGGG-CCTTHHHHHHHHHGGG-SSHHHHHTTHHHHHHHHHHHHHHHH------TCT--TSCEE
T ss_pred ccccccccccccccc-ccccc-cCchHHHHHHHHhHHh-hCHHHHHHHHHHHHHHHHHHHHHHH------hcc--CCCcc
Confidence 3111110 1112 34544 5699999999999985 8999999999999999999999993 211 33789
Q ss_pred hHHHH-HHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHh
Q 044206 192 MKRWF-TDTIRNVVLRMIVGKGCDSVDGEEWIELLTRFS 229 (245)
Q Consensus 192 ~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~ 229 (245)
+.+++ ..+++|+++. +||.+.+ +.+++.+....+.
T Consensus 164 ~~~~~~~~~~~~vi~~-~~G~~~~--~~~~~~~~~~~~~ 199 (436)
T 2cd8_A 164 LMESLAWPLPITVISE-LLGVPEP--DRAAFRVWTDAFV 199 (436)
T ss_dssp HHHHTTTHHHHHHHHH-HHTCCGG--GHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-HhCCCHH--HHHHHHHHHHHHh
Confidence 99877 5799999998 7998754 3345555555443
No 24
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=99.83 E-value=7.4e-21 Score=153.19 Aligned_cols=156 Identities=13% Similarity=0.043 Sum_probs=126.5
Q ss_pred CCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCC-ChhhHHHhhcCCcc
Q 044206 51 SWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRP-KTLAMEILGYNFSM 129 (245)
Q Consensus 51 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~-~~~~~~~~~~~~~~ 129 (245)
.+|++||++++. .+++.++.+++++||||++ ++++.+.++++||+.+++++.++ .|++++ ......... + .+
T Consensus 6 ~~p~iGnl~~~~--~~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~~~-g-~~ 78 (389)
T 1n97_A 6 LREAWPYLKDLQ--QDPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKATFQYRALSRLT-G-RG 78 (389)
T ss_dssp HHHHHHHHHHHH--HCHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHHHH-C-SS
T ss_pred cccccccHHHHh--hChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHHHh-C-Cc
Confidence 579999999886 5789999999999999999 89999999999999999999765 677765 222222222 2 34
Q ss_pred eeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHHHHHHHHHHHHHh
Q 044206 130 FGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDTIRNVVLRMIV 209 (245)
Q Consensus 130 ~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~f 209 (245)
++.. +|+.|+++||+++++ |++++++.+.+.+.++++++++.| . +.++|+.+++..+++|++++++|
T Consensus 79 l~~~-~g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l------~-----~~~~dl~~~~~~~~~~vi~~~~f 145 (389)
T 1n97_A 79 LLTD-WGESWKEARKALKDP-FLPKNVRGYREAMEEEARAFFGEW------R-----GEERDLDHEMLALSLRLLGRALF 145 (389)
T ss_dssp TTTC-CHHHHHHHHHHHCGG-GSHHHHHTTHHHHHHHHHHHHHTC------C-----SCCEEHHHHHHHHHHHHHHHHHH
T ss_pred cccC-CcHHHHHHHHHhCcc-cCHHHHHHHHHHHHHHHHHHHHHc------c-----CCcCcHHHHHHHHHHHHHHHHHc
Confidence 5544 599999999999986 899999999999999999988888 4 22799999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHhh
Q 044206 210 GKGCDSVDGEEWIELLTRFSE 230 (245)
Q Consensus 210 G~~~~~~~~~~~~~~~~~~~~ 230 (245)
|.+++ + ++.+.++.+..
T Consensus 146 G~~~~--~--~~~~~~~~~~~ 162 (389)
T 1n97_A 146 GKPLS--P--SLAEHALKALD 162 (389)
T ss_dssp SSCCC--H--HHHHHHHHHHH
T ss_pred CCcch--H--HHHHHHHHHHH
Confidence 99886 2 55555555544
No 25
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=99.83 E-value=1.1e-19 Score=147.55 Aligned_cols=161 Identities=11% Similarity=0.046 Sum_probs=122.6
Q ss_pred CCcccccccccCCCCChhHHHHHHHHHhC-CeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChh--hHHHhhcCC
Q 044206 51 SWPVIGHLHLLGGPEPSHWVLGKMADEYG-PIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTL--AMEILGYNF 127 (245)
Q Consensus 51 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG-~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~--~~~~~~~~~ 127 (245)
+.|++|++..+. .+++.++.+++++|| ||+++.++|.+.++++||+.++.++. ...|.+++... ...... +.
T Consensus 7 g~P~lG~~~~~~--~~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~-g~ 81 (417)
T 1izo_A 7 HDKSLDNSLTLL--KEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFYD--TDRFQRQNALPKRVQKSLF-GV 81 (417)
T ss_dssp BCCCTTHHHHHH--HHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHTC--TTTEECTTCSCHHHHTTTT-CT
T ss_pred CCCccchHHHHh--hCcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHhc--ccccccccccccchhhhhc-cc
Confidence 459999999886 678999999999998 89999998999999999999986553 33455432211 111111 22
Q ss_pred cceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHHHHHHHHHHHH
Q 044206 128 SMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDTIRNVVLRM 207 (245)
Q Consensus 128 ~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~ 207 (245)
.+++ ..+|+.|+++|++++++ |++++++.+.+.+.+.++++++.| .+. .++|+.+++..+++++++++
T Consensus 82 ~~l~-~~dg~~h~~~R~~~~~~-f~~~~l~~~~~~i~~~~~~l~~~l------~~~----~~~dl~~~~~~~~~~vi~~~ 149 (417)
T 1izo_A 82 NAIQ-GMDGSAHIHRKMLFLSL-MTPPHQKRLAELMTEEWKAAVTRW------EKA----DEVVLFEEAKEILCRVACYW 149 (417)
T ss_dssp TCGG-GCCHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHHHHHH------TTS----SEEEHHHHHHHHHHHHHHHH
T ss_pred ccee-ecCChHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHHHHH------hcC----CCeeHHHHHHHHHHHHHHHH
Confidence 2444 44699999999999986 899999999999999999999988 432 27999999999999999998
Q ss_pred HhcCCCCCCChHHHHHHHHHHh
Q 044206 208 IVGKGCDSVDGEEWIELLTRFS 229 (245)
Q Consensus 208 ~fG~~~~~~~~~~~~~~~~~~~ 229 (245)
||.+.+..+..++.+.+..+.
T Consensus 150 -~G~~~~~~~~~~~~~~~~~~~ 170 (417)
T 1izo_A 150 -AGVPLKETEVKERADDFIDMV 170 (417)
T ss_dssp -HTCCCCTTTHHHHHHHHHHHH
T ss_pred -cCCCCCchHHHHHHHHHHHHH
Confidence 698876544344444444443
No 26
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=99.83 E-value=1.8e-19 Score=147.93 Aligned_cols=157 Identities=15% Similarity=0.168 Sum_probs=119.1
Q ss_pred CChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhh--HHHhhc--CCcceeeccCCcchH
Q 044206 65 EPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLA--MEILGY--NFSMFGFSPYGSYWR 140 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~g~~w~ 140 (245)
..++..+.+|+++||||+++++|+.+.|+++||+++++++.+ ..|.+++.... ...++. ...++++..+|+.|+
T Consensus 10 ~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~w~ 87 (456)
T 3mdm_A 10 RVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMS--TKYNKDSKMYRALQTVFGERLFGQGLVSECNYERWH 87 (456)
T ss_dssp CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTC--TTSCCCHHHHHHHHEETTEESSTTSTTTCCCHHHHH
T ss_pred chHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhh--ccccccchhHHHHHHhhcccccCCCcccCCChHHHH
Confidence 467888999999999999999999999999999999999953 34544432211 111110 113455555699999
Q ss_pred HHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHHHHHHHHHHHHHhcCCCCCC--Ch
Q 044206 141 EIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDTIRNVVLRMIVGKGCDSV--DG 218 (245)
Q Consensus 141 ~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~~~--~~ 218 (245)
++||+++++ |++++++.+.+.+.++++++++.+.+ ..+.+.++|+.+++..+++|++++++||.+++.. ..
T Consensus 88 ~~Rr~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~------~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~~~ 160 (456)
T 3mdm_A 88 KQRRVIDLA-FSRSSLVSLMETFNEKAEQLVEILEA------KADGQTPVSMQDMLTYTAMDILAKAAFGMETSMLLGAQ 160 (456)
T ss_dssp HHHHHHGGG-GSHHHHHTTHHHHHHHHHHHHHHHHH------TCSSSSCEEHHHHHHHHHHHHHHHHHHSCCCCGGGTCC
T ss_pred HHHhhcccc-cCHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCCeeeHHHHHHHHHHHHHHHHHcCCChhhhcccc
Confidence 999999986 89999999999999999999999943 2222458999999999999999999999998752 22
Q ss_pred HHHHHHHHHHhh
Q 044206 219 EEWIELLTRFSE 230 (245)
Q Consensus 219 ~~~~~~~~~~~~ 230 (245)
+++.+.+..+..
T Consensus 161 ~~~~~~~~~~~~ 172 (456)
T 3mdm_A 161 KPLSQAVKLMLE 172 (456)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 345555544443
No 27
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.82 E-value=6.8e-20 Score=151.77 Aligned_cols=167 Identities=15% Similarity=0.080 Sum_probs=118.9
Q ss_pred ccccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCC-ccccCCCChhh
Q 044206 41 KKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHD-KVFASRPKTLA 119 (245)
Q Consensus 41 ~~~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~-~~~~~~~~~~~ 119 (245)
..+.+|+|++++|++|+++++. .+++..+.+++++||+||++++|+.++++++||+++++++.++. ..+.+.+....
T Consensus 11 ~~~~pPgp~~~~P~iG~~~~~~--~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~~~~~~~~~~~~ 88 (491)
T 3dax_A 11 QTGEPPLENGLIPYLGCALQFG--ANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFATS 88 (491)
T ss_dssp CTTCCCEEEEEESCTTTTGGGT--CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCTTEESSHHHHHHH
T ss_pred CCCCCCcCCCcccchhhHHHHh--hCHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCccCChHHHHHHHH
Confidence 3455666663489999999987 67899999999999999999999999999999999999996544 22322211112
Q ss_pred HHHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHHHH
Q 044206 120 MEILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDT 199 (245)
Q Consensus 120 ~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~ 199 (245)
...++. ++....+|+.|+++|+.+.+. |+.++++.+.+.+.+.+.+.+++.... .........+++..++..+
T Consensus 89 ~~~~g~---~~~~~~~g~~w~~~r~~~~~~-f~~~~l~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~l~~~~~~~ 161 (491)
T 3dax_A 89 AKAFGH---RSIDPMDGNTTENINDTFIKT-LQGHALNSLTESMMENLQRIMRPPVSS---NSKTAAWVTEGMYSFCYRV 161 (491)
T ss_dssp HHHHTC---CCCCGGGTSBCCCHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHC-------------CCEEEEHHHHHHHH
T ss_pred HHHcCC---CcccccchhHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHHHHhhccC---CcCCCCceeccHHHHHHHH
Confidence 223332 333133489999999999985 898889888887777777666554210 0001113467899999999
Q ss_pred HHHHHHHHHhcCCCCCC
Q 044206 200 IRNVVLRMIVGKGCDSV 216 (245)
Q Consensus 200 ~~~vi~~~~fG~~~~~~ 216 (245)
++++++.++||.+.+.+
T Consensus 162 i~~~~~~~~fG~~~~~~ 178 (491)
T 3dax_A 162 MFEAGYLTIFGRDLTRR 178 (491)
T ss_dssp HHHHHHHHHHCBCSTTG
T ss_pred HHHHhHHHHcCcccccc
Confidence 99999999999887653
No 28
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=99.80 E-value=7.1e-19 Score=142.78 Aligned_cols=159 Identities=9% Similarity=0.042 Sum_probs=118.9
Q ss_pred CcccccccccCCCCChhHHHHHHHHHh-CCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChh--hHHHhhcCCc
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEY-GPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTL--AMEILGYNFS 128 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~y-G~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~--~~~~~~~~~~ 128 (245)
.|++|++..+. .+++.++.+++++| |||+++..++.+.+++++|+.++ ++.+. ..|++++... ..... .+..
T Consensus 7 ~P~iG~~~~~~--~~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~~-~~f~~~~~~~~~~~~~~-~g~~ 81 (415)
T 3awm_A 7 TKGPDETLSLL--ADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYDT-TRFEREGAMPVAIQKTL-LGQG 81 (415)
T ss_dssp --CCCCHHHHH--HSTTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTCT-TTEECTTCSCHHHHTTT-SCSS
T ss_pred CCccchHHHHH--hChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhcc-cccccccccchhhhhhc-cCCc
Confidence 38999998886 57899999999999 79999999888999999999987 66433 4565543211 11111 1222
Q ss_pred ceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHHHHHHHHHHHHH
Q 044206 129 MFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDTIRNVVLRMI 208 (245)
Q Consensus 129 ~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~ 208 (245)
+++ ..+|+.|+++|++++++ |++++++.+.+.+.+.++++++.| .+.. ++|+.+++..+++++++++
T Consensus 82 ~l~-~~dg~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~~------~~~~----~vdl~~~~~~~~~~vi~~~- 148 (415)
T 3awm_A 82 GVQ-GLDGETHRHRKQMFMGL-MTPERVRALAQLFEAEWRRAVPGW------TRKG----EIVFYDELHEPLTRAVCAW- 148 (415)
T ss_dssp SGG-GCCHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHHHHHH------HHHS----EEEHHHHHHHHHHHHHHHH-
T ss_pred cee-ecCcHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHhh------ccCC----cEeHHHHHHHHHHHHHHHH-
Confidence 444 44699999999999985 899999999999999999999998 3222 7999999999999999999
Q ss_pred hcCCCCCCChHHHHHHHHHH
Q 044206 209 VGKGCDSVDGEEWIELLTRF 228 (245)
Q Consensus 209 fG~~~~~~~~~~~~~~~~~~ 228 (245)
||.+.+..+..++.+.+...
T Consensus 149 ~G~~~~~~~~~~~~~~~~~~ 168 (415)
T 3awm_A 149 AGVPLPDDEAGNRAGELRAL 168 (415)
T ss_dssp HTCCCCGGGHHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHH
Confidence 89887643333344433333
No 29
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.79 E-value=7.3e-19 Score=145.89 Aligned_cols=165 Identities=15% Similarity=0.086 Sum_probs=116.5
Q ss_pred hhccccccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCC
Q 044206 37 YTSKKKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPK 116 (245)
Q Consensus 37 ~~~~~~~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~ 116 (245)
.+.++.+.||+|++++|++||++.+. .+++.++.+++++|||||++++|+.++++++||+++++++.++...++.++.
T Consensus 12 ~~~~~~~~PPgp~~~~P~iG~~~~~~--~~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~~~~~~~~ 89 (498)
T 3b6h_A 12 RRTRRPGEPPLDLGSIPWLGYALDFG--KDAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAY 89 (498)
T ss_dssp -CCCCTTCCCEECCSSTTTBTHHHHH--HCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTTTEECCHH
T ss_pred HhccCCCCCCCCCCCCcchhhHHHhc--cCHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccccCCchhh
Confidence 33445567777774489999999886 5789999999999999999999999999999999999999665432333322
Q ss_pred h--hhHHHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHH
Q 044206 117 T--LAMEILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKR 194 (245)
Q Consensus 117 ~--~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~ 194 (245)
. .....++ .+++. .+|+.| |++..+. |+.++++.+.+.+.+++.+.++.... . .......+++..
T Consensus 90 ~~~~~~~~~g---~~~~~-~~~~~~---rr~~~~~-~~~~~l~~~~~~~~~~~~~~l~~~~~----~-~~~~~~~~~l~~ 156 (498)
T 3b6h_A 90 AIFLMERIFD---VQLPH-YSPSDE---KARMKLT-LLHRELQALTEAMYTNLHAVLLGDAT----E-AGSGWHEMGLLD 156 (498)
T ss_dssp HHHHHHHTSC---CCCTT-CCHHHH---HHHHHTT-SSHHHHHHHHHHHHHHHHHHHHHHHH----H-HCSSCEEEEHHH
T ss_pred HHHHHHHHcC---CCccc-cCHHHH---HHHHHHh-hchHhHHHHHHHHHHHHHHHHhhccc----c-cCCCcceecHHH
Confidence 1 1122222 23333 346666 4555554 78888888877777777766665421 1 111133578999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCC
Q 044206 195 WFTDTIRNVVLRMIVGKGCDSV 216 (245)
Q Consensus 195 ~~~~~~~~vi~~~~fG~~~~~~ 216 (245)
++..+++++++.++||.+++.+
T Consensus 157 ~~~~vi~~~~~~~~fG~~~~~~ 178 (498)
T 3b6h_A 157 FSYSFLLRAGYLTLYGIEALPR 178 (498)
T ss_dssp HHHHHHHHHHHHHHHCBSCSSC
T ss_pred HHHHHHHHHHHHhhcCcccccc
Confidence 9999999999999999987654
No 30
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=99.78 E-value=6.4e-19 Score=146.12 Aligned_cols=165 Identities=10% Similarity=0.082 Sum_probs=119.7
Q ss_pred ccccCCCCCCCCcccccccccC---CCCChhHHHHHHHHHhCC-eeEEEeCCeeE-------EEEcCHHHHHHHHhhCC-
Q 044206 41 KKREAPEARGSWPVIGHLHLLG---GPEPSHWVLGKMADEYGP-IFKIKMGINRA-------LVVSNWEMAKECLTTHD- 108 (245)
Q Consensus 41 ~~~~~p~~~~~~p~lG~~~~~~---~~~~~~~~~~~~~~~yG~-v~~~~~~~~~~-------v~~~~p~~~~~il~~~~- 108 (245)
+.+.|||++ ++|++|++..+. ...+++.++.+++++||+ ||++++++.++ +++++++..+.++....
T Consensus 26 p~~~pPGp~-g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~~~~v 104 (495)
T 3dsk_A 26 PIRNIPGNY-GLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVDKV 104 (495)
T ss_dssp CBCCCCCCC-CSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGCTTTE
T ss_pred CCCCCCCCC-CCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeecccccc
Confidence 445666665 899999987662 126899999999999999 99999988877 67788887776663321
Q ss_pred ---ccccCCCChhhHHHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCC
Q 044206 109 ---KVFASRPKTLAMEILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTN 185 (245)
Q Consensus 109 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (245)
..+........ ..++..........+|+.|+++|+++.+. |++.. +.+.+.+.+.+.++++.|.+...+
T Consensus 105 ~k~~~~~~~~~~~~-~l~g~~~~~~~~~~~g~~h~~~R~~~~~~-f~~~~-~~~~~~i~~~~~~ll~~~~~~~~~----- 176 (495)
T 3dsk_A 105 EKKDLLTGTYMPST-ELTGGYRILSYLDPSEPKHEKLKNLLFFL-LKSSR-NRIFPEFQATYSELFDSLEKELSL----- 176 (495)
T ss_dssp ECSSCTTSSSCCCG-GGGTTCCCGGGCCTTSHHHHHHHHHHHHH-HHHTT-TTHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccccccCCCCc-cccCCCcceeeeCCCchHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 22222211112 34442222333445699999999999986 78754 889999999999999988543211
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhcCCCCC
Q 044206 186 KMLLVEMKRWFTDTIRNVVLRMIVGKGCDS 215 (245)
Q Consensus 186 ~~~~~d~~~~~~~~~~~vi~~~~fG~~~~~ 215 (245)
+.++|+.++++.++++++++++||.+.+.
T Consensus 177 -~~~vdl~~~~~~~~~~~i~~~~~G~~~~~ 205 (495)
T 3dsk_A 177 -KGKADFGGSSDGTAFNFLARAFYGTNPAD 205 (495)
T ss_dssp -HSSEESHHHHHHHHHHHHHHHHHSCCGGG
T ss_pred -CCCccHHHHHHHHHHHHHHHHHcCCCcch
Confidence 23799999999999999999999988765
No 31
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=99.75 E-value=5.5e-18 Score=137.10 Aligned_cols=155 Identities=12% Similarity=0.057 Sum_probs=113.3
Q ss_pred CCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC-CeeEEEEcCHHHHHHHHhhCC-ccccCCCChhh---
Q 044206 45 APEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG-INRALVVSNWEMAKECLTTHD-KVFASRPKTLA--- 119 (245)
Q Consensus 45 ~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-~~~~v~~~~p~~~~~il~~~~-~~~~~~~~~~~--- 119 (245)
||||+ ++|++|++.. +++..+.+++ +||||+++.++ |...+++++++.+++++.++. ..+..++....
T Consensus 3 pPGp~-~~P~~g~~~~-----~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~~~~ 75 (404)
T 1jfb_A 3 ASGAP-SFPFSRASGP-----EPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSA 75 (404)
T ss_dssp ---CC-BSSCCCSSTT-----SCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSH
T ss_pred CCCCC-CCCCCCCcCC-----CccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccCCccccc
Confidence 46565 7999999764 5777888886 59999999874 666777899999999997652 22333332211
Q ss_pred H-HHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHHH
Q 044206 120 M-EILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTD 198 (245)
Q Consensus 120 ~-~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~ 198 (245)
. .....+..++.+. +|+.|+++||++++. |++++++.+.+.+.++++++++.|.+ ....+.++|+.+.+..
T Consensus 76 ~~~~~~~~~~~l~~~-~g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~------~~~~~~~~d~~~~~~~ 147 (404)
T 1jfb_A 76 SGKQAAKAKPTFVDM-DPPEHMHQRSMVEPT-FTPEAVKNLQPYIQRTVDDLLEQMKQ------KGCANGPVDLVKEFAL 147 (404)
T ss_dssp HHHHHTTSCCCGGGC-CTTHHHHHHTTTGGG-GSHHHHHHHHHHHHHHHHHHHHHHHH------HCSTTSCEEHHHHTTT
T ss_pred cccchhcccCccccc-CchhHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCCCccHHHHHHH
Confidence 1 0112222344444 599999999999986 89999999999999999999999943 1111347999999999
Q ss_pred HHHHHHHHHHhcCCCC
Q 044206 199 TIRNVVLRMIVGKGCD 214 (245)
Q Consensus 199 ~~~~vi~~~~fG~~~~ 214 (245)
.+.++++..+||.+.+
T Consensus 148 ~~~~~i~~~~~G~~~~ 163 (404)
T 1jfb_A 148 PVPSYIIYTLLGVPFN 163 (404)
T ss_dssp HHHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHHcCCCHH
Confidence 9999999999998764
No 32
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.75 E-value=3.3e-18 Score=141.14 Aligned_cols=159 Identities=14% Similarity=0.167 Sum_probs=113.4
Q ss_pred ccccccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCCh-
Q 044206 39 SKKKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKT- 117 (245)
Q Consensus 39 ~~~~~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~- 117 (245)
.++.+.||+|++++|++||++.+. .+++.++.+++++||||+++++++.++++++||+.+++++.++.. ++.++..
T Consensus 14 ~~~~~~pPgp~~~~P~iG~~~~~~--~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~-~~~~~~~~ 90 (475)
T 3b98_A 14 TRRRNEPPLDKGMIPWLGHALEFG--KDAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVAS-LDQTSYAQ 90 (475)
T ss_dssp CCCTTCCCEECCSSTTTBTHHHHH--HCHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTTT-EESHHHHH
T ss_pred ccCCCCCCCCCCCcchHHhHHHHh--hCHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCccc-CCchHHHH
Confidence 344567777774499999999886 678999999999999999999999999999999999999965432 3322211
Q ss_pred -hhHHHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHH
Q 044206 118 -LAMEILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWF 196 (245)
Q Consensus 118 -~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~ 196 (245)
.....++ .+++. .+|+.| |+++.+. |++++++.+.+.+.+++.++++.+.. .........+++..++
T Consensus 91 ~~~~~~~g---~~~~~-~~~~~~---R~~~~~~-f~~~~l~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~ 158 (475)
T 3b98_A 91 VLMKRIFN---MILPS-HNPESE---KKRAEMH-FQGASLTQLSNSMQNNLRLLMTPSEM----GLKTSEWKKDGLFNLC 158 (475)
T ss_dssp HHHHHTTC---CCCTT-CCHHHH---HHHHHHH-TSHHHHHHHHHHHHHHHHHHSSTTTT----TCSSCSCEEEEHHHHH
T ss_pred HHHHHHhC---CCCCC-CChHHH---HHHHHHH-cChhhHHHHHHHHHHHHHHHHhhccc----ccCCCCceeehHHHHH
Confidence 1112222 23333 336554 6777775 89999999888888888777666521 1101113357888889
Q ss_pred HHHHHHHHHHHHhcCC
Q 044206 197 TDTIRNVVLRMIVGKG 212 (245)
Q Consensus 197 ~~~~~~vi~~~~fG~~ 212 (245)
..+++++++...||.+
T Consensus 159 ~~~~~~~~~~~~~g~~ 174 (475)
T 3b98_A 159 YSLLFKTGYLTVFGAE 174 (475)
T ss_dssp HHHHHHHHHHHHHCCT
T ss_pred HHHHHHHhhhheeCCc
Confidence 9999999999899954
No 33
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=99.73 E-value=2e-17 Score=133.87 Aligned_cols=160 Identities=14% Similarity=0.137 Sum_probs=114.6
Q ss_pred CCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEE----e-CC-eeEEEEcCHHHHHHHH-hhCCccccCCCCh
Q 044206 45 APEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIK----M-GI-NRALVVSNWEMAKECL-TTHDKVFASRPKT 117 (245)
Q Consensus 45 ~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~----~-~~-~~~v~~~~p~~~~~il-~~~~~~~~~~~~~ 117 (245)
.|++|.++|+. +. .+++..+.++ ++||||++++ + ++ .+.++++||+.+++++ .++ .|++++..
T Consensus 11 lppgp~~~p~~-----~~--~~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~--~~~~~~~~ 80 (406)
T 1ued_A 11 LLREPANFQLR-----TN--CDPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE--HFTTRPQF 80 (406)
T ss_dssp EEECCTTTTCE-----ET--TEECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS--SEECCCCC
T ss_pred CcccCcccCCC-----CC--CCcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCc--cccccccc
Confidence 34434478876 33 5788899999 9999999999 6 78 8999999999999999 433 25555431
Q ss_pred hhHH-Hhhc---CCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhH
Q 044206 118 LAME-ILGY---NFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMK 193 (245)
Q Consensus 118 ~~~~-~~~~---~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~ 193 (245)
.... .... ...+++. .+|+.|+++||++++. |++++++.+.+.+.++++++++.|. .. +.++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~l~~-~~g~~~~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~------~~---g~~~d~~ 149 (406)
T 1ued_A 81 TQSKSGAHVEAQFVGQIST-YDPPEHTRLRKMLTPE-FTVRRIRRMEPAIQSLIDDRLDLLE------AE---GPSADLQ 149 (406)
T ss_dssp ---------CGGGTTCGGG-CCTTHHHHHHHHHGGG-SSHHHHHHHHHHHHHHHHHHHHHHH------HH---CTTEEHH
T ss_pred ccccccccccccccccccc-CCCHHHHHHHHHhhhh-hCHHHHHHHHHHHHHHHHHHHHHHH------hc---CCCeeHH
Confidence 1110 0110 1124444 4699999999999986 8999999999999999999999993 21 2378999
Q ss_pred HHHHH-HHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Q 044206 194 RWFTD-TIRNVVLRMIVGKGCDSVDGEEWIELLTRF 228 (245)
Q Consensus 194 ~~~~~-~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~ 228 (245)
+++.. +++|+++ .+||.+.+ +.+++.+.++.+
T Consensus 150 ~~~~~~~~~~vi~-~~~G~~~~--~~~~~~~~~~~~ 182 (406)
T 1ued_A 150 GLFADPVGAHALC-ELLGIPRD--DQREFVRRIRRN 182 (406)
T ss_dssp HHTHHHHHHHHHH-HHHTCCHH--HHHHHHHHHHHC
T ss_pred HHHHHHhHHHHHH-HHcCCCHH--HHHHHHHHHHHH
Confidence 88865 9999999 57998643 223455444443
No 34
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=99.72 E-value=2e-17 Score=136.41 Aligned_cols=166 Identities=11% Similarity=0.053 Sum_probs=118.3
Q ss_pred cccccCCCCCCCCcccccccccC---CCC-ChhHHHHHHHHHhCC-eeEEEeCC-------eeEEEEcCHHHHHHHHhh-
Q 044206 40 KKKREAPEARGSWPVIGHLHLLG---GPE-PSHWVLGKMADEYGP-IFKIKMGI-------NRALVVSNWEMAKECLTT- 106 (245)
Q Consensus 40 ~~~~~~p~~~~~~p~lG~~~~~~---~~~-~~~~~~~~~~~~yG~-v~~~~~~~-------~~~v~~~~p~~~~~il~~- 106 (245)
.+.+.+|||. ++|++|++..+. ... +++.++.+++++||+ ||++++++ ...|++++++..+.++..
T Consensus 6 ~Pl~~iPGp~-g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~ 84 (473)
T 3dan_A 6 KPLREIPGSY-GIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDVS 84 (473)
T ss_dssp SCBCCCCCCC-CSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCTTTCSCCEEEEECSTTTGGGGGCTT
T ss_pred CCCCCCCCCC-CCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCCccccCCceEEeecccccceecCCc
Confidence 3567788876 899999987642 014 789999999999999 99999863 355666777666565531
Q ss_pred ---CCccccCCCChhhHHHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhcc
Q 044206 107 ---HDKVFASRPKTLAMEILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKS 183 (245)
Q Consensus 107 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (245)
+...+........ ...++.....+...+|+.|+++|+++.+. |++ .++.+.+.+.+.++++++.|.+...+
T Consensus 85 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~h~~~R~~~~~~-f~~-~~~~~~~~i~~~~~~ll~~~~~~~~~--- 158 (473)
T 3dan_A 85 KVEKKDLFTGTYMPST-KLTGGYRVLSYLDPSEPRHAQLKNLLFFM-LKN-SSNRVIPQFETTYTELFEGLEAELAK--- 158 (473)
T ss_dssp TEECSSCTTSSSCCCG-GGGTTSCCGGGCCTTSHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred ceeccccccccccCCc-cccCCCcceeeeCCCcHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 1122222211111 23332222333455699999999999986 788 48999999999999999998532211
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHhcCCCCC
Q 044206 184 TNKMLLVEMKRWFTDTIRNVVLRMIVGKGCDS 215 (245)
Q Consensus 184 ~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~~ 215 (245)
+.++|+.+++..++++++++++||.+.+.
T Consensus 159 ---~~~vdl~~~~~~~~~~~i~~~~~G~~~~~ 187 (473)
T 3dan_A 159 ---NGKAAFNDVGEQAAFRFLGRAYFNSNPEE 187 (473)
T ss_dssp ---HSCEECHHHHHHHHHHHHHHHHHSCCGGG
T ss_pred ---CCcccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 23799999999999999999999998765
No 35
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=99.71 E-value=1.8e-16 Score=128.31 Aligned_cols=164 Identities=13% Similarity=0.152 Sum_probs=118.8
Q ss_pred ccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEe-CCee-EEEEcCHHHHHHHHhhCCccccCCCChhhH
Q 044206 43 REAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKM-GINR-ALVVSNWEMAKECLTTHDKVFASRPKTLAM 120 (245)
Q Consensus 43 ~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~-~~~~-~v~~~~p~~~~~il~~~~~~~~~~~~~~~~ 120 (245)
+..|++| ++|+.++ .. .+++.++.+++ +||||+++.+ +|.+ .++++||+.+++++.+ ..|.+++.....
T Consensus 8 ~~~~~~~-~~p~~~~---~~--~~p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~--~~f~~~~~~~~~ 78 (406)
T 1s1f_A 8 QAVPPVR-DWPAVDL---PG--SDFDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTND--PRFGREAVMDRQ 78 (406)
T ss_dssp CCSCCEE-ECCCCCC---CT--TCCCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTC--TTEESTTTTTTT
T ss_pred hhccCCC-CCCCCcc---cc--cCchHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcC--CCccCCcCCCCC
Confidence 3455555 5777766 22 57888888885 7999999996 5666 9999999999999964 357766532111
Q ss_pred H----H-hhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHH
Q 044206 121 E----I-LGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRW 195 (245)
Q Consensus 121 ~----~-~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~ 195 (245)
. . ......++++. +|+.|+++||+++++ |++++++.+.+.+.++++++++.|.+ . +.++|+.+.
T Consensus 79 ~~~~~~~~~~~~~~l~~~-dg~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~-----~----~~~~d~~~~ 147 (406)
T 1s1f_A 79 VTRLAPHFIPARGAVGFL-DPPDHTRLRRSVAAA-FTARGVERVRERSRGMLDELVDAMLR-----A----GPPADLTEA 147 (406)
T ss_dssp BCBSSSSCSSCTTSGGGC-CTTHHHHHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHHHHHH-----H----CSSEEHHHH
T ss_pred cccccccccccccccccC-CchHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHHHHh-----c----CCCccHHHH
Confidence 0 0 11112355544 599999999999986 89999999999999999999999932 2 227898866
Q ss_pred H-HHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHh
Q 044206 196 F-TDTIRNVVLRMIVGKGCDSVDGEEWIELLTRFS 229 (245)
Q Consensus 196 ~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~ 229 (245)
+ ..+++|+++. +||.+.+ +.+++.+....+.
T Consensus 148 ~~~~~~~~vi~~-~~G~~~~--~~~~~~~~~~~~~ 179 (406)
T 1s1f_A 148 VLSPFPIAVICE-LMGVPAT--DRHSMHTWTQLIL 179 (406)
T ss_dssp TTTHHHHHHHHH-HHTCCGG--GHHHHHHHHHHHH
T ss_pred HhhHhHHHHHHH-HhCCCHH--HHHHHHHHHHHHH
Confidence 6 5799999998 5998764 3345555555444
No 36
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=99.70 E-value=1.4e-16 Score=129.15 Aligned_cols=166 Identities=15% Similarity=0.140 Sum_probs=116.7
Q ss_pred cCCCCCCCCcccccccccCCCCChhHHHHHHHHHh-CCeeEEEe-CCeeEEEEcCHHHHHHHHhhCCccccCCCChhhHH
Q 044206 44 EAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEY-GPIFKIKM-GINRALVVSNWEMAKECLTTHDKVFASRPKTLAME 121 (245)
Q Consensus 44 ~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~y-G~v~~~~~-~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~~ 121 (245)
.+|+++ ++|.+..-..+. .+++..+.++ ++| |||+++++ ++.+.++++||+.+++++.++ .+++++......
T Consensus 6 ~~~~~~-~~P~~~~~~~~~--~~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~~~~~~~~~~~~ 79 (412)
T 2zbx_A 6 TTPQTT-DAPAFPSNRSCP--YQLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDP--RLSSNRTDDNFP 79 (412)
T ss_dssp --CCCC-SSCBSSCCCSST--TSCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEECCTTSTTSC
T ss_pred CCCCCC-CCCCCCCCchhc--cChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCc--ccccCccccccc
Confidence 445554 667553333444 6789999999 788 99999998 889999999999999999653 244443211000
Q ss_pred H-------hhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHH
Q 044206 122 I-------LGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKR 194 (245)
Q Consensus 122 ~-------~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~ 194 (245)
. ......+++. .+|+.|+++||++++. |++++++.+.+.+.++++++++.|. .. +.++|+.+
T Consensus 80 ~~~~~~~~~~~~~~~l~~-~~g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~------~~---g~~~d~~~ 148 (412)
T 2zbx_A 80 ATSPRFEAVRESPQAFIG-LDPPEHGTRRRMTISE-FTVKRIKGMRPEVEEVVHGFLDEML------AA---GPTADLVS 148 (412)
T ss_dssp CCSGGGC----CCCCGGG-CCTTHHHHHHTTTGGG-GSHHHHHHHHHHHHHHHHHHHHHHH------HH---CSCEEHHH
T ss_pred cccccccccccccccccc-CCcHHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHHHHHH------hc---CCCccHHH
Confidence 0 0001124444 4699999999999986 8999999999999999999999993 21 23789998
Q ss_pred HHH-HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHh
Q 044206 195 WFT-DTIRNVVLRMIVGKGCDSVDGEEWIELLTRFS 229 (245)
Q Consensus 195 ~~~-~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~ 229 (245)
.+. .+++++++. +||.+.+ +.+++.+.+..+.
T Consensus 149 ~~~~~~~~~vi~~-~~G~~~~--~~~~~~~~~~~~~ 181 (412)
T 2zbx_A 149 QFALPVPSMVICR-LLGVPYA--DHEFFQDASKRLV 181 (412)
T ss_dssp HTTTHHHHHHHHH-HHTCCGG--GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HcCCCHH--HHHHHHHHHHHHh
Confidence 876 599999997 7998764 3344555544433
No 37
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=99.70 E-value=7.9e-17 Score=131.26 Aligned_cols=160 Identities=12% Similarity=0.019 Sum_probs=116.4
Q ss_pred ccccccccC--CC-CChhHHHHHHHHHhCCeeEEEe-CCeeEEEEcCHHHHHHHHhhCCccccCCCC-hhh----H-H-H
Q 044206 54 VIGHLHLLG--GP-EPSHWVLGKMADEYGPIFKIKM-GINRALVVSNWEMAKECLTTHDKVFASRPK-TLA----M-E-I 122 (245)
Q Consensus 54 ~lG~~~~~~--~~-~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~~~~p~~~~~il~~~~~~~~~~~~-~~~----~-~-~ 122 (245)
++|++.... .. .+++..+.++++ ||||++++. |+.+.+++++++.+++++.+ ...|++++. ... . . .
T Consensus 11 ~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~-~~~fs~r~~~~~~~~~~~~~~~ 88 (428)
T 1cpt_A 11 IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQ-PGLFSNAEGSEILYDQNNEAFM 88 (428)
T ss_dssp HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHC-TTTEESSSSCSSCCCHHHHHHH
T ss_pred hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcC-chhccCccccccCCcccccchh
Confidence 888765432 11 247778888876 799999998 67899999999999999954 456777764 221 1 1 2
Q ss_pred ---hhc---CCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHH-
Q 044206 123 ---LGY---NFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRW- 195 (245)
Q Consensus 123 ---~~~---~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~- 195 (245)
.+. ...++++. +|+.|+++||++++. |++++++.+.+.+.++++++++.+ .+. +.++|+.+.
T Consensus 89 ~~~~g~~~~~~~~l~~~-~g~~~~~~Rr~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l------~~~---~~~~d~~~~~ 157 (428)
T 1cpt_A 89 RSISGGCPHVIDSLTSM-DPPTHTAYRGLTLNW-FQPASIRKLEENIRRIAQASVQRL------LDF---DGECDFMTDC 157 (428)
T ss_dssp HHHTTTSSCSSCCGGGC-CTTHHHHHHHHHHTT-SSHHHHGGGHHHHHHHHHHHHHHH------HTS---SSEEEHHHHT
T ss_pred ccccccccccccccccC-ChHHHHHHHHHhhhh-hCHHHHHHHHHHHHHHHHHHHHHH------HHh---CCCeehHHHH
Confidence 221 12345444 599999999999985 899999999999999999999999 332 127899755
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHh
Q 044206 196 FTDTIRNVVLRMIVGKGCDSVDGEEWIELLTRFS 229 (245)
Q Consensus 196 ~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~ 229 (245)
...+++|+|+.+ ||.+.+ +.+++.+..+.+.
T Consensus 158 ~~~~~~~vi~~~-fG~~~~--~~~~~~~~~~~~~ 188 (428)
T 1cpt_A 158 ALYYPLHVVMTA-LGVPED--DEPLMLKLTQDFF 188 (428)
T ss_dssp TTTHHHHHHHHH-HTCCGG--GHHHHHHHHHTTT
T ss_pred HhhhHHHHHHHH-cCCCHh--HHHHHHHHHHHHH
Confidence 567999999999 998764 3345555554443
No 38
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=99.70 E-value=1.7e-16 Score=127.44 Aligned_cols=150 Identities=14% Similarity=0.082 Sum_probs=113.2
Q ss_pred CChhHHHHHHHHHhCCeeEEEeCC----eeEEEEcCHHHHHHHHhhCCccccCCCChhhHHHhhcCCcceeeccCCcchH
Q 044206 65 EPSHWVLGKMADEYGPIFKIKMGI----NRALVVSNWEMAKECLTTHDKVFASRPKTLAMEILGYNFSMFGFSPYGSYWR 140 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~~~----~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~ 140 (245)
.+++..+.++ ++||||+++..++ .+.++++||+.+++++ ++...|++++............ +.++..+|+.|+
T Consensus 12 ~~p~~~~~~l-r~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~g~~~~ 88 (384)
T 3oo3_A 12 LDPVPEFEEL-QKAGPLHEYDTEPGMDGRKQWLVTGHDEVRAIL-ADHERFSSMRPVDDEADRALLP-GILQAYDPPDHT 88 (384)
T ss_dssp TEECHHHHHH-HHTCSEECCCCC------CEEEECCHHHHHHHH-HCTTTEECSCCCC-----CCCT-TCGGGCCTTHHH
T ss_pred cChhHHHHHH-HhcCCeeecccccccCCCCEEEEcCHHHHHHHH-hCchhccCCccccccccccccc-cccccCCChhHH
Confidence 6789999999 4999999999876 8999999999999999 5556788776543222212222 334555699999
Q ss_pred HHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHHHHHHHHHHHHHhcCCCCCCChHH
Q 044206 141 EIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDTIRNVVLRMIVGKGCDSVDGEE 220 (245)
Q Consensus 141 ~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~~~~~~~ 220 (245)
++||++++. |++++++.+.+.+.+.++++++.|. +. ++++|+.+++...+.++++..+||.+.+ +.++
T Consensus 89 ~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~------~~---~~~~d~~~~~~~~~~~~v~~~~~G~~~~--~~~~ 156 (384)
T 3oo3_A 89 RLRRTVAPA-YSARRMERLRPRIEEIVEECLDDFE------SV---GAPVDFVRHAAWPIPAYIACEFLGVPRD--DQAE 156 (384)
T ss_dssp HHHHHHGGG-GCHHHHHHHHHHHHHHHHHHHHHHH------HS---CSSEEHHHHTTTHHHHHHHHHHHTCCGG--GHHH
T ss_pred HHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHHHH------hc---CCCccHHHHHHHHHHHHHHHHHcCCCHH--HHHH
Confidence 999999985 8999999999999999999999983 22 3378999999988888888889998764 3345
Q ss_pred HHHHHHHHh
Q 044206 221 WIELLTRFS 229 (245)
Q Consensus 221 ~~~~~~~~~ 229 (245)
+.+.++.+.
T Consensus 157 ~~~~~~~~~ 165 (384)
T 3oo3_A 157 LSRMIRESR 165 (384)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555443
No 39
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=99.69 E-value=6.4e-16 Score=125.34 Aligned_cols=166 Identities=10% Similarity=0.018 Sum_probs=118.6
Q ss_pred cccCCCCCCCCccc--ccccccCC---CCChhHHHHHHHHHhC--CeeEEE-eCCeeEEEEcCHHHHHHHHhhCCccccC
Q 044206 42 KREAPEARGSWPVI--GHLHLLGG---PEPSHWVLGKMADEYG--PIFKIK-MGINRALVVSNWEMAKECLTTHDKVFAS 113 (245)
Q Consensus 42 ~~~~p~~~~~~p~l--G~~~~~~~---~~~~~~~~~~~~~~yG--~v~~~~-~~~~~~v~~~~p~~~~~il~~~~~~~~~ 113 (245)
.+.+|+|+ +.|.. +.+-.+.. ..+++..+.+++ +|| ||+++. +| +.++++||+.+++++. +...|++
T Consensus 10 ~~~~~~p~-~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g--~~vvv~~~~~v~~vl~-~~~~f~~ 84 (415)
T 2zwu_A 10 ANLAPLPP-HVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG--GHWIATRGQLIREAYE-DYRHFSS 84 (415)
T ss_dssp -CCCCCCT-TSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG--CEEEECSHHHHHHHHH-CTTTEET
T ss_pred cccCCCCC-CCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC--CeEEEcCHHHHHHHHc-CccccCC
Confidence 34445444 67764 54322111 146888899985 799 999998 54 6899999999999995 4456877
Q ss_pred CC-ChhhHHHhhcCCcc-eeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccch
Q 044206 114 RP-KTLAMEILGYNFSM-FGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVE 191 (245)
Q Consensus 114 ~~-~~~~~~~~~~~~~~-~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d 191 (245)
++ ....... ..+ .+ ++.. +|+.|+++||+++++ |++.+++.+.+.+.++++++++.| .... ++|
T Consensus 85 ~~~~~~~~~~-~~~-~~~l~~~-~g~~~~~~R~~~~~~-f~~~~l~~~~~~i~~~~~~l~~~l------~~~~----~~d 150 (415)
T 2zwu_A 85 ECPFIPREAG-EAY-DFIPTSM-DPPEQRQFRALANQV-VGMPVVDKLENRIQELACSLIESL------RPQG----QCN 150 (415)
T ss_dssp TSCSSSHHHH-HHC-CCTTTTC-CTTTTHHHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHHHH------GGGT----EEE
T ss_pred CcccCCCCcc-ccc-cccCccC-CCcHHHHHHHHHHhh-hCHHHHHHHHHHHHHHHHHHHHHH------HhcC----Ccc
Confidence 76 2222111 112 24 5444 599999999999986 899999999999999999999998 3322 689
Q ss_pred hHHHH-HHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHh
Q 044206 192 MKRWF-TDTIRNVVLRMIVGKGCDSVDGEEWIELLTRFS 229 (245)
Q Consensus 192 ~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~ 229 (245)
+.+.+ ..+++++++.+ ||.+.+ +.+++.+..+.+.
T Consensus 151 ~~~~~~~~~~~~vi~~~-~G~~~~--~~~~~~~~~~~~~ 186 (415)
T 2zwu_A 151 FTEDYAEPFPIRIFMLL-AGLPEE--DIPHLKYLTDQMT 186 (415)
T ss_dssp HHHHTTTHHHHHHHHHH-HTCCGG--GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-cCCCHH--HHHHHHHHHHHHH
Confidence 99765 78999999999 998775 3345666555544
No 40
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=99.68 E-value=1.4e-16 Score=129.94 Aligned_cols=148 Identities=10% Similarity=0.058 Sum_probs=111.3
Q ss_pred CCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEE--------eCCeeEEEEcCHHHHHHHHhhCCccccCCCChhh
Q 044206 48 ARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIK--------MGINRALVVSNWEMAKECLTTHDKVFASRPKTLA 119 (245)
Q Consensus 48 ~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~--------~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~ 119 (245)
.+.++++++....-. ++++..+.++ ++||||+++. +|+.+.+++++|+.+++++. +...|++++....
T Consensus 22 ~~~~~~~~~~~~~~~--~~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~-~~~~fs~~~~~~~ 97 (433)
T 3ivy_A 22 LPPGFDFTDPAIYAE--RLPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISR-HSDVFSSYENGVI 97 (433)
T ss_dssp CCTTCCTTCHHHHTT--CCCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHH-CTTTEESTTTCSC
T ss_pred CCCCCCCCCHHHhhc--CCccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHc-ChhhccCCccccc
Confidence 333566655544333 5789999998 7899999998 45578999999999999995 4456776653221
Q ss_pred H--------HHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccch
Q 044206 120 M--------EILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVE 191 (245)
Q Consensus 120 ~--------~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d 191 (245)
. ........+++ ..+|+.|+++||++++. |++++++.+.+.+.+.++++++.+ .... ++|
T Consensus 98 ~~~~~~~~~~~~~~~~~~l~-~~dg~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l------~~~~----~~d 165 (433)
T 3ivy_A 98 PRFKNDIAREDIEVQRFVML-NMDAPHHTRLRKIISRG-FTPRAVGRLHDELQERAQKIAAEA------AAAG----SGD 165 (433)
T ss_dssp CCCCTTCCHHHHHGGGGSGG-GCCTTHHHHHHHHHGGG-SCHHHHHTTHHHHHHHHHHHHHHH------HHHC----EEE
T ss_pred ccccccccccccccccCCcc-ccChHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHHH------hhCC----Cee
Confidence 1 11111223444 45699999999999985 899999999999999999999998 3222 689
Q ss_pred hHHHH-HHHHHHHHHHHHhcCC
Q 044206 192 MKRWF-TDTIRNVVLRMIVGKG 212 (245)
Q Consensus 192 ~~~~~-~~~~~~vi~~~~fG~~ 212 (245)
+.+.+ ..+++++++++ ||.+
T Consensus 166 ~~~~~~~~~~~~vi~~l-~G~~ 186 (433)
T 3ivy_A 166 FVEQVSCELPLQAIAGL-LGVP 186 (433)
T ss_dssp HHHHTTSHHHHHHHHHH-HTCC
T ss_pred HHHHHHHHHHHHHHHHH-cCCC
Confidence 88887 99999999996 8964
No 41
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=99.68 E-value=4.3e-16 Score=126.15 Aligned_cols=147 Identities=11% Similarity=0.045 Sum_probs=108.7
Q ss_pred CChhHHHHHHHHHhCCeeEEEe-CCeeEEEEcCHHHHHHHHhhCCccccCCCC---hh----hHHH-hhcCCcceeeccC
Q 044206 65 EPSHWVLGKMADEYGPIFKIKM-GINRALVVSNWEMAKECLTTHDKVFASRPK---TL----AMEI-LGYNFSMFGFSPY 135 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~~~~p~~~~~il~~~~~~~~~~~~---~~----~~~~-~~~~~~~~~~~~~ 135 (245)
.+++..+.++ ++||||+++++ ++.+.++++||+.+++++.++. |.+++. .. .... .... .++++ .+
T Consensus 24 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~-~~ 98 (408)
T 3abb_A 24 YQPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDPR--LSSDWGHPDFPVVVRRTEDRGGLA-FPLIG-VD 98 (408)
T ss_dssp TSCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCTT--EECCTTSTTCCCCC---------C-CTTTT-CC
T ss_pred cCchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCCC--cccccccccccccccCCccccccc-ccccc-CC
Confidence 6788999999 89999999998 8899999999999999996532 444332 11 1110 0011 24444 46
Q ss_pred CcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHH-HHHHHHHHHHHhcCCCC
Q 044206 136 GSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFT-DTIRNVVLRMIVGKGCD 214 (245)
Q Consensus 136 g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~-~~~~~vi~~~~fG~~~~ 214 (245)
|+.|+++||++++. |++.+++.+.+.+.++++++++.|. .. +.++|+.+.+. .+++++++. +||.+.+
T Consensus 99 g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~------~~---g~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 167 (408)
T 3abb_A 99 DPVHARQRRMLIPS-FGVKRMNAIRPRLQSLVDRLLDDML------AK---GPGADLVSAFALPVPSVAICE-LLGVPYG 167 (408)
T ss_dssp TTHHHHHHHHHGGG-GCHHHHHHHHHHHHHHHHHHHHHHH------HT---CSCEEHHHHTTTHHHHHHHHH-HHTCCGG
T ss_pred chHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHHHHHH------hc---CCCeehHHHHHHHHHHHHHHH-HhCCCHH
Confidence 99999999999986 8999999999999999999999993 21 23789988876 599999997 7998764
Q ss_pred CCChHHHHHHHHHHh
Q 044206 215 SVDGEEWIELLTRFS 229 (245)
Q Consensus 215 ~~~~~~~~~~~~~~~ 229 (245)
+.+++.+.+..+.
T Consensus 168 --~~~~~~~~~~~~~ 180 (408)
T 3abb_A 168 --DHDFFEECSRNFV 180 (408)
T ss_dssp --GHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHh
Confidence 3345555554443
No 42
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=99.67 E-value=1.1e-15 Score=123.58 Aligned_cols=146 Identities=12% Similarity=0.085 Sum_probs=111.1
Q ss_pred CChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChh-------hHHHhhcCCcceeeccCCc
Q 044206 65 EPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTL-------AMEILGYNFSMFGFSPYGS 137 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~ 137 (245)
.+++..+.++ ++||||+++..++.+.++++||+.+++++.++ ..|++++... .....+ .+++ ..+|+
T Consensus 13 ~~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~l~-~~~g~ 86 (404)
T 3ejb_B 13 KNPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQN---QMML-FQNQP 86 (404)
T ss_dssp HCHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHHH---TSGG-GCCTT
T ss_pred cCchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhhh---cchh-hcCCc
Confidence 5788888888 58999999999999999999999999999765 5677765311 112222 2454 44599
Q ss_pred chHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHH-HHHHHHHHHHHHHhcCCCCCC
Q 044206 138 YWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRW-FTDTIRNVVLRMIVGKGCDSV 216 (245)
Q Consensus 138 ~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~-~~~~~~~vi~~~~fG~~~~~~ 216 (245)
.|+++||+++++ |++++++.+.+.+.++++++++.+ .+.. .+|+... ...+++++++.+ ||.+.+
T Consensus 87 ~h~~~Rr~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l------~~~~----~~d~~~~~~~~~~~~vi~~~-~G~~~~-- 152 (404)
T 3ejb_B 87 DHRRLRTLASGA-FTPRTTESYQPYIIETVHHLLDQV------QGKK----KMEVISDFAFPLASFVIANI-IGVPEE-- 152 (404)
T ss_dssp HHHHHHHHHHGG-GSHHHHHTTHHHHHHHHHHHHHTT------TTTS----EEEHHHHTHHHHHHHHHHHH-HTCCGG--
T ss_pred hHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHh------hhcC----CcchHHHHHHHHHHHHHHHH-cCCCHH--
Confidence 999999999986 899999999999999999999888 4322 6887554 556999999995 897654
Q ss_pred ChHHHHHHHHHHhh
Q 044206 217 DGEEWIELLTRFSE 230 (245)
Q Consensus 217 ~~~~~~~~~~~~~~ 230 (245)
+.+++.+....+..
T Consensus 153 ~~~~~~~~~~~~~~ 166 (404)
T 3ejb_B 153 DREQLKEWAASLIQ 166 (404)
T ss_dssp GHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHH
Confidence 33456565555543
No 43
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=99.67 E-value=4.3e-16 Score=126.21 Aligned_cols=147 Identities=11% Similarity=0.135 Sum_probs=111.0
Q ss_pred CChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhH-----HHhhcCCcceeeccCCcch
Q 044206 65 EPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAM-----EILGYNFSMFGFSPYGSYW 139 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~w 139 (245)
.+++..+.++ ++||||+++++++.+.++++||+.+++++.++. |++++..... ........+++. .+|+.|
T Consensus 20 ~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~h 95 (411)
T 3a4g_A 20 QNPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDPR--LSKDWRHTLPEDQRADMPATPTPMMIL-MDPPDH 95 (411)
T ss_dssp TCCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCTT--EESCGGGGSCGGGCTTCCSCSSCCGGG-CCTTHH
T ss_pred cCchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCCC--cccccccccccccccccCccccccccc-CCchHH
Confidence 5789999999 899999999999999999999999999996542 7766532110 111112234544 469999
Q ss_pred HHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHH-HHHHHHHHHHHHHHhcCCCCCCCh
Q 044206 140 REIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKR-WFTDTIRNVVLRMIVGKGCDSVDG 218 (245)
Q Consensus 140 ~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~-~~~~~~~~vi~~~~fG~~~~~~~~ 218 (245)
+++||+++++ |++++++.+.+.+.++++++++.| .+. .++|+.+ +...+++++++.+ ||.+.+ +.
T Consensus 96 ~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l------~~~----~~vd~~~~~~~~~~~~vi~~~-~G~~~~--~~ 161 (411)
T 3a4g_A 96 TRLRKLVGRS-FTVRRMNELEPRITEIADGLLAGL------PTD----GPVDLMREYAFQIPVQVICEL-LGVPAE--DR 161 (411)
T ss_dssp HHHHHHHHTT-CCHHHHHHHHHHHHHHHHHHHHHS------CSS----SCEEHHHHTTTTHHHHHHHHH-HTCCGG--GH
T ss_pred HHHHHHhhhh-hCHHHHHHHHHHHHHHHHHHHHHH------Hhc----CCccHHHHHHHHhHHHHHHHH-hCCCHH--HH
Confidence 9999999986 899999999999999999999988 332 2789875 4578999999975 998764 33
Q ss_pred HHHHHHHHHHh
Q 044206 219 EEWIELLTRFS 229 (245)
Q Consensus 219 ~~~~~~~~~~~ 229 (245)
+++.+....+.
T Consensus 162 ~~~~~~~~~~~ 172 (411)
T 3a4g_A 162 DDFSAWSSVLV 172 (411)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 45555554443
No 44
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=99.66 E-value=2.6e-16 Score=127.53 Aligned_cols=152 Identities=14% Similarity=0.062 Sum_probs=105.0
Q ss_pred HHHHHhhhhccccccCCCCCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCc
Q 044206 30 SRNLLSKYTSKKKREAPEARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDK 109 (245)
Q Consensus 30 ~~~~~~~~~~~~~~~~p~~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~ 109 (245)
..+.+++++.++...+|||+. . .+++.++.++++ |||| +.++.+.++++||+.+++++.++ .
T Consensus 6 ~~~~iyr~~~~pl~~~PGp~~-----------~--~~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~-~ 67 (411)
T 2jjn_A 6 ETTCCARRTLTTIDEVPGMAD-----------E--TALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDT-A 67 (411)
T ss_dssp -----------CCCSCCCSSC-----------H--HHHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCT-T
T ss_pred HhHHhhhcccCCCCCCCCccc-----------c--cChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCc-c
Confidence 344566777778888887761 1 467888888876 9998 56667899999999999999654 4
Q ss_pred cccCCCChhhHHHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCccc
Q 044206 110 VFASRPKTLAMEILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLL 189 (245)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 189 (245)
.|++++...... ......+++.. +|+.|+++||+++++ |++.+++.+.+.+.++++++++. . +.+
T Consensus 68 ~f~~~~~~~~~~-~~~~~~~~~~~-~g~~~~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~----------~--~~~ 132 (411)
T 2jjn_A 68 TFSSDPTRVIEG-ASPTPGMIHEI-DPPEHRALRKVVSSA-FTPRTISDLEPRIRDVTRSLLAD----------A--GES 132 (411)
T ss_dssp TEESCGGGGSTT-CCCCTTCGGGC-CTTHHHHHHHHHHHH-SCHHHHHTTHHHHHHHHHHHHHT----------S--CSE
T ss_pred cccCcccccCCc-ccccccccccC-CchHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHHhc----------C--CCc
Confidence 677775322111 11122344444 599999999999986 89999999999998888776655 1 227
Q ss_pred chhHHH-HHHHHHHHHHHHHhcCCCCC
Q 044206 190 VEMKRW-FTDTIRNVVLRMIVGKGCDS 215 (245)
Q Consensus 190 ~d~~~~-~~~~~~~vi~~~~fG~~~~~ 215 (245)
+|+.+. ...+++|+++.+ ||.+.+.
T Consensus 133 ~d~~~~~~~~~~~~vi~~~-fG~~~~~ 158 (411)
T 2jjn_A 133 FDLVDVLAFPLPVTIVAEL-LGLPPMD 158 (411)
T ss_dssp EEHHHHTTTHHHHHHHHHH-HTCCSCC
T ss_pred eeHHHHHHHHHHHHHHHHH-cCCCHHH
Confidence 899854 568999999999 9988754
No 45
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=99.65 E-value=1.9e-15 Score=122.15 Aligned_cols=148 Identities=12% Similarity=0.122 Sum_probs=110.1
Q ss_pred CChhHHHHHHHHHhCCeeEEEe-CCeeEEEEcCHHHHHHHHhhCCccccCCCC--h-hhHHHhhc--CCcceeeccCCcc
Q 044206 65 EPSHWVLGKMADEYGPIFKIKM-GINRALVVSNWEMAKECLTTHDKVFASRPK--T-LAMEILGY--NFSMFGFSPYGSY 138 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~~~~p~~~~~il~~~~~~~~~~~~--~-~~~~~~~~--~~~~~~~~~~g~~ 138 (245)
.+++..+.++ ++||||+++++ ++.+.++++||+.+++++.++ .|++++. . ........ ...+++. .+|+.
T Consensus 19 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~ 94 (403)
T 3aba_A 19 FLPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQVPHALHTQDGVVTQKPGRGSLLW-QDEPE 94 (403)
T ss_dssp TSCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCCSCCTTSSSCCCCCCCCTTCCTT-CCTTH
T ss_pred cChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccccc-CCchh
Confidence 5778888899 89999999997 899999999999999999653 4666532 1 10000111 1234544 46999
Q ss_pred hHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHH-HHHHHHHHHHHHhcCCCCCCC
Q 044206 139 WREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWF-TDTIRNVVLRMIVGKGCDSVD 217 (245)
Q Consensus 139 w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~ 217 (245)
|+++||+++++ |++.+++.+.+.+.++++++++.|.+ . +.++|+.+.+ ..+++++++. +||.+.+ +
T Consensus 95 h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l~~-----~----~~~~d~~~~~~~~~~~~vi~~-~~G~~~~--~ 161 (403)
T 3aba_A 95 HTSDRKLLAKE-FTVRRMQALRPNIQRIVDEHLDAIEA-----R----GGPVDLVKTFANAVPSMVISD-LFGVPVE--R 161 (403)
T ss_dssp HHHHHHHHHHH-SCHHHHHTTHHHHHHHHHHHHHHHHH-----H----CSCEEHHHHTTTHHHHHHHHH-HHTCCGG--G
T ss_pred HHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHHh-----c----CCCccHHHHHHHHHHHHHHHH-HcCCCHH--H
Confidence 99999999986 89999999999999999999999932 2 2378998766 5799999998 7998764 3
Q ss_pred hHHHHHHHHHHh
Q 044206 218 GEEWIELLTRFS 229 (245)
Q Consensus 218 ~~~~~~~~~~~~ 229 (245)
.+++.+..+.+.
T Consensus 162 ~~~~~~~~~~~~ 173 (403)
T 3aba_A 162 RAEFQDIAEAMM 173 (403)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH
Confidence 345555554443
No 46
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=99.65 E-value=9.5e-16 Score=125.08 Aligned_cols=151 Identities=9% Similarity=0.051 Sum_probs=113.0
Q ss_pred ChhHHHHHHHHHhCCeeEEEeC-------CeeEEEEcCHHHHHHHHhhCCccccCCCCh--h-hHHHhhcCCcceeeccC
Q 044206 66 PSHWVLGKMADEYGPIFKIKMG-------INRALVVSNWEMAKECLTTHDKVFASRPKT--L-AMEILGYNFSMFGFSPY 135 (245)
Q Consensus 66 ~~~~~~~~~~~~yG~v~~~~~~-------~~~~v~~~~p~~~~~il~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~ 135 (245)
+++..+.+++ +||||+++.++ +.+.++++||+.+++++.++ ..|++++.. . ....++....++++. +
T Consensus 45 ~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~-d 121 (435)
T 2wm5_A 45 VRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYPNITINDQTPELAEYFGSMIVL-D 121 (435)
T ss_dssp HHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSSCCSSSCCCHHHHHHHHGGGGC-C
T ss_pred ChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCccccccCccccchhhhccccccC-C
Confidence 5777888885 69999999986 66899999999999999764 467777531 1 111111111345555 5
Q ss_pred CcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHH-HHHHHHHHHHHHhcCCCC
Q 044206 136 GSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWF-TDTIRNVVLRMIVGKGCD 214 (245)
Q Consensus 136 g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~ 214 (245)
|+.|+++||+++++ |++.+++.+.+.+.++++++++.|.+ . .. +.++|+.+.+ ..+++|+++++ ||.+.+
T Consensus 122 g~~h~~~R~~l~~~-fs~~~l~~~~~~i~~~~~~ll~~l~~----~-~~--~~~vd~~~~~~~~~~~~vi~~~-~G~~~~ 192 (435)
T 2wm5_A 122 DPRHQRLRSIVSRA-FTPKVVARIEAAVRDRAHRLVSSMIA----N-NP--DRQADLVSELAGPLPLQIICDM-MGIPKA 192 (435)
T ss_dssp TTHHHHHHHHHHHT-CCHHHHHHHHHHHHHHHHHHHHHHHH----H-CT--TSEEEHHHHTTTHHHHHHHHHH-HTCCGG
T ss_pred cHHHHHHHHHhHHh-hCHHHHHHHHHHHHHHHHHHHHHHHh----c-CC--CCcEehHHHHHHHHHHHHHHHH-cCCCHH
Confidence 99999999999986 89999999999999999999999843 1 11 3378998766 79999999999 998774
Q ss_pred CCChHHHHHHHHHHhh
Q 044206 215 SVDGEEWIELLTRFSE 230 (245)
Q Consensus 215 ~~~~~~~~~~~~~~~~ 230 (245)
+.+++.+..+.+..
T Consensus 193 --~~~~~~~~~~~~~~ 206 (435)
T 2wm5_A 193 --DHQRIFHWTNVILG 206 (435)
T ss_dssp --GHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhc
Confidence 33456666665554
No 47
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=99.64 E-value=2.4e-15 Score=121.56 Aligned_cols=146 Identities=16% Similarity=0.189 Sum_probs=110.5
Q ss_pred CChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCCh--h-----------h-HHH-hhcCCcc
Q 044206 65 EPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKT--L-----------A-MEI-LGYNFSM 129 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~--~-----------~-~~~-~~~~~~~ 129 (245)
.+++..+.++ ++||||+++++++.+.++++||+.+++++.++ .|++++.. . . ... ...+ .+
T Consensus 14 ~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 89 (404)
T 1z8o_A 14 VDWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDPKKKYPGVEVEFPAYLGFPEDVRNYFA-TN 89 (404)
T ss_dssp SSHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCTTCCCTTCCCCCGGGTTCCHHHHHHHS-SS
T ss_pred cCcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccchhhhcc-cc
Confidence 5789999999 99999999999999999999999999999764 57666432 1 1 110 0012 34
Q ss_pred eeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHH-HHHHHHHHHHHH
Q 044206 130 FGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWF-TDTIRNVVLRMI 208 (245)
Q Consensus 130 ~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~ 208 (245)
+... +|+.|+++||+++++ |++.+++.+.+.+.++++++++.+ .. +.++|+.+.+ ..+++++++.+
T Consensus 90 l~~~-~g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l------~~----~~~~d~~~~~~~~~~~~vi~~~- 156 (404)
T 1z8o_A 90 MGTS-DPPTHTRLRKLVSQE-FTVRRVEAMRPRVEQITAELLDEV------GD----SGVVDIVDRFAHPLPIKVICEL- 156 (404)
T ss_dssp GGGC-CTTHHHHHHHHHHTT-SCHHHHHHTHHHHHHHHHHHHHTS------CS----SSEEEHHHHTTTHHHHHHHHHH-
T ss_pred cccC-CCcHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHhh------hh----cCCcchHHHHhHHHHHHHHHHH-
Confidence 5444 699999999999986 899999999999999999988888 33 2378998655 68999999984
Q ss_pred hcCCCCCCChHHHHHHHHHHh
Q 044206 209 VGKGCDSVDGEEWIELLTRFS 229 (245)
Q Consensus 209 fG~~~~~~~~~~~~~~~~~~~ 229 (245)
||.+.+. .+++.+..+.+.
T Consensus 157 ~G~~~~~--~~~~~~~~~~~~ 175 (404)
T 1z8o_A 157 LGVDEKY--RGEFGRWSSEIL 175 (404)
T ss_dssp TTCCGGG--TTTHHHHHHHHH
T ss_pred hCCCHHH--HHHHHHHHHHHh
Confidence 9987643 234555444443
No 48
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=99.64 E-value=4.3e-16 Score=125.72 Aligned_cols=148 Identities=11% Similarity=0.104 Sum_probs=109.9
Q ss_pred CChhHHHHHHHHHh--CCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhHHHhhcCCcceeeccCCcchHHH
Q 044206 65 EPSHWVLGKMADEY--GPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAMEILGYNFSMFGFSPYGSYWREI 142 (245)
Q Consensus 65 ~~~~~~~~~~~~~y--G~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~ 142 (245)
.+++.++.+++++| |||+++..++ +.++++||+.+++++ ++...|++++..........+. ..++..+|+.|+++
T Consensus 19 ~~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~ 95 (398)
T 4fb2_A 19 GTPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVI-QNTKAFSNKGVTFPRYETGEFE-LMMAGQDDPVHKKY 95 (398)
T ss_dssp SSSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHH-TCCSSEEGGGCSSSCC----CC-CTTTTCCTTHHHHH
T ss_pred cChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHH-hChhhccCCcccccCCCCcccc-cCcccCCchHHHHH
Confidence 68999999999999 9999999876 589999999999999 4555777765432211111122 23345569999999
Q ss_pred HHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHH-HHHHHHHHHHHHHhcCCCCCCChHHH
Q 044206 143 RKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRW-FTDTIRNVVLRMIVGKGCDSVDGEEW 221 (245)
Q Consensus 143 R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~-~~~~~~~vi~~~~fG~~~~~~~~~~~ 221 (245)
||++.+. |++++++.+.+.+.++++++++.| .+.. .+|+... ...+++++++. +||.+.+ +.+++
T Consensus 96 R~~~~~~-f~~~~l~~~~~~i~~~~~~l~~~l------~~~~----~~d~~~~~~~~~~~~vi~~-~~G~~~~--~~~~~ 161 (398)
T 4fb2_A 96 RQLVAKP-FSPEATDLFTEQLRQSTNDLIDAR------IELG----EGDAATWLANEIPARLTAI-LLGLPPE--DGDTY 161 (398)
T ss_dssp HHHHHTT-TCHHHHHTTHHHHHHHHHHHHHTT------TTTT----EEEHCCCCCTTHHHHHHHH-HTTSCGG--GHHHH
T ss_pred HHHHHHh-hCHHHHHHHHHHHHHHHHHHHHHH------hhcC----CccHHHHHHHHHHHHHHHH-HcCCCHH--HHHHH
Confidence 9999985 899999999999999999998888 3322 5776444 47899999999 7897653 33455
Q ss_pred HHHHHHHh
Q 044206 222 IELLTRFS 229 (245)
Q Consensus 222 ~~~~~~~~ 229 (245)
.+....+.
T Consensus 162 ~~~~~~~~ 169 (398)
T 4fb2_A 162 RRWVWAIT 169 (398)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555443
No 49
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=99.64 E-value=2.9e-15 Score=121.58 Aligned_cols=148 Identities=12% Similarity=0.123 Sum_probs=111.4
Q ss_pred CChhHHHHHHHHHhCCeeEEEeC-CeeEEEEcCHHHHHHHHhhCCccccCCCChh----hHHHh---hcCCcceeeccCC
Q 044206 65 EPSHWVLGKMADEYGPIFKIKMG-INRALVVSNWEMAKECLTTHDKVFASRPKTL----AMEIL---GYNFSMFGFSPYG 136 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~~-~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~g 136 (245)
.+++..+.+++++ |||++++++ |.+.++++||+.+++++.++ .|++++... ..... +....+++. .+|
T Consensus 29 ~dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~dg 104 (417)
T 3tyw_A 29 FAAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSADIRRPGFPALGEGEQEAGARFRPFIR-TDA 104 (417)
T ss_dssp TSCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECCSSSTTCCCSSTTTSTTSSSCCCGGG-CCH
T ss_pred cCchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccCCccccccccccccccccccccchhh-cCC
Confidence 6889999999988 999999986 58999999999999999654 566543211 11101 012234444 459
Q ss_pred cchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHH-HHHHHHHHHHHHhcCCCCC
Q 044206 137 SYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWF-TDTIRNVVLRMIVGKGCDS 215 (245)
Q Consensus 137 ~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~ 215 (245)
+.|+++||++++. |++++++.+.+.+.++++++++.+. +. ++++|+.+.+ ..+++++++.+ ||.+.+.
T Consensus 105 ~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~------~~---g~~~d~~~~~~~~~~~~vi~~~-~G~~~~~ 173 (417)
T 3tyw_A 105 PEHTRYRRMLLPA-FTVRRVRAMRPAVQARVDEILDGML------AA---GGPVDLVSAYANAVSTSVICEL-LGIPRHD 173 (417)
T ss_dssp HHHHHHHHHHGGG-GCHHHHHHTHHHHHHHHHHHHHHHH------HH---CSSEEHHHHTHHHHHHHHHHHH-HTCCTTT
T ss_pred cHHHHHHHHHHhh-hCHHHHHHHHHHHHHHHHHHHHHHH------hh---CCCcchHHHHHHHHHHHHHHHH-hCCCHHH
Confidence 9999999999985 8999999999999999999999994 22 3378999887 68999999997 9988763
Q ss_pred CChHHHHHHHHHHh
Q 044206 216 VDGEEWIELLTRFS 229 (245)
Q Consensus 216 ~~~~~~~~~~~~~~ 229 (245)
.+.+.+....+.
T Consensus 174 --~~~~~~~~~~~~ 185 (417)
T 3tyw_A 174 --LEFFRDVTRISG 185 (417)
T ss_dssp --TTHHHHHHHHHH
T ss_pred --HHHHHHHHHHHh
Confidence 234444444443
No 50
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.64 E-value=1.1e-15 Score=123.74 Aligned_cols=150 Identities=19% Similarity=0.217 Sum_probs=110.1
Q ss_pred CChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCC--hhhH-HH------hhc-CCcceeecc
Q 044206 65 EPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPK--TLAM-EI------LGY-NFSMFGFSP 134 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~--~~~~-~~------~~~-~~~~~~~~~ 134 (245)
.+++..+.++ ++||||+++++++.+.++++||+.+++++.++. +++++. .... .. .+. ...++ +..
T Consensus 15 ~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~ 90 (408)
T 1odo_A 15 ADHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSD--VSKDARAHWPAFGEVVGTWPLALWVAVENM-FTA 90 (408)
T ss_dssp TTHHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCTT--EESCHHHHCTTHHHHTTTCTTTHHHHCCSG-GGC
T ss_pred CChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCCC--cccccccccccccccccccccccccccccc-ccc
Confidence 6799999999 999999999998899999999999999996543 333321 0100 10 000 11244 445
Q ss_pred CCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHH-HHHHHHHHHHHhcCCC
Q 044206 135 YGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFT-DTIRNVVLRMIVGKGC 213 (245)
Q Consensus 135 ~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~-~~~~~vi~~~~fG~~~ 213 (245)
+|+.|+++||+++++ |++.+++.+.+.+.++++++++.|.+ .. . +.++|+.+++. .+++|+++. +||.+.
T Consensus 91 ~g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~----~~-~--~~~~d~~~~~~~~~~~~vi~~-~~G~~~ 161 (408)
T 1odo_A 91 YGPNHRKLRRLVAPA-FSARRVDAMRPAVEAMVTGLVDRLAE----LP-A--GEPVDLRQELAYPLPIAVIGH-LMGVPQ 161 (408)
T ss_dssp CHHHHHHHHHTTGGG-GSHHHHHHHHHHHHHHHHHHHHHHHH----SC-T--TSCEEHHHHTTTHHHHHHHHH-HHTCCH
T ss_pred CChHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHh----hc-C--CCCcchHHHHhhhhHHHHHHH-HhCCCH
Confidence 699999999999986 89999999999999999999999942 11 1 33789998886 599999996 799865
Q ss_pred CCCChHHHHHHHHHHh
Q 044206 214 DSVDGEEWIELLTRFS 229 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~ 229 (245)
+ +.+++.+.++.+.
T Consensus 162 ~--~~~~~~~~~~~~~ 175 (408)
T 1odo_A 162 D--RRDGFRALVDGVF 175 (408)
T ss_dssp H--HHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHh
Confidence 3 2345555555443
No 51
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=99.62 E-value=5.8e-15 Score=120.10 Aligned_cols=148 Identities=14% Similarity=0.072 Sum_probs=110.9
Q ss_pred CChhHHHHHHHHHhCCeeEEEeC--CeeEEEEcCHHHHHHHHhhCCccccCCCCh---------hhHH-----HhhcCCc
Q 044206 65 EPSHWVLGKMADEYGPIFKIKMG--INRALVVSNWEMAKECLTTHDKVFASRPKT---------LAME-----ILGYNFS 128 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~~--~~~~v~~~~p~~~~~il~~~~~~~~~~~~~---------~~~~-----~~~~~~~ 128 (245)
.+++.++.+++ +||||+++++| +.+.++++||+.+++++.++ .|++++.. .... ....+..
T Consensus 20 ~~p~~~~~~l~-~~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (425)
T 2z3t_A 20 ADPYPVYRRYR-EAAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNARVASGDTDTAPVPIPTEHRALRTVVEN 96 (425)
T ss_dssp HCCHHHHHHHH-HHCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSCCCC---------------CHHHHHHTT
T ss_pred cChHHHHHHHH-hcCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Ccccccccccccccccccccccccccccccccc
Confidence 46788888886 59999999987 77899999999999999654 67776531 0000 0111113
Q ss_pred ceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHH-HHHHHHHHHHHH
Q 044206 129 MFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRW-FTDTIRNVVLRM 207 (245)
Q Consensus 129 ~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~-~~~~~~~vi~~~ 207 (245)
++++. +|+.|+++||+++++ |++++++.+.+.+.++++++++.| ... + ++|+.+. ...+++|+++.+
T Consensus 97 ~l~~~-dg~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l------~~~---g-~~dl~~~~~~~~~~~vi~~~ 164 (425)
T 2z3t_A 97 WLVFL-DPPHHTELRSLLTTE-FSPSIVTGLRPRIAELASALLDRL------RAQ---R-RPDLVEGFAAPLPILVISAL 164 (425)
T ss_dssp CGGGC-CHHHHHHHHHHHHGG-GSHHHHHHHHHHHHHHHHHHHHHH------TTS---S-SCBHHHHTTTHHHHHHHHHH
T ss_pred ccccC-CchHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHHH------Hhc---C-CccHHHHHHHHHHHHHHHHH
Confidence 55555 599999999999986 899999999999999999999999 332 2 6898875 478999999998
Q ss_pred HhcCCCCCCChHHHHHHHHHHhh
Q 044206 208 IVGKGCDSVDGEEWIELLTRFSE 230 (245)
Q Consensus 208 ~fG~~~~~~~~~~~~~~~~~~~~ 230 (245)
||.+.+ +.+++.+..+.+..
T Consensus 165 -~G~~~~--~~~~~~~~~~~~~~ 184 (425)
T 2z3t_A 165 -LGIPEE--DHTWLRANAVALQE 184 (425)
T ss_dssp -HTCCGG--GHHHHHHHHHHHHT
T ss_pred -hCCCHH--HHHHHHHHHHHHHh
Confidence 998764 33456665555544
No 52
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=99.62 E-value=1.8e-15 Score=122.78 Aligned_cols=146 Identities=12% Similarity=0.082 Sum_probs=108.5
Q ss_pred CChhHHHHHHHHHhCCeeEEEe-CCeeEEEEcCHHHHHHHHhhCCccccCCCCh-hhHHHhhc--CCcceeeccCCcchH
Q 044206 65 EPSHWVLGKMADEYGPIFKIKM-GINRALVVSNWEMAKECLTTHDKVFASRPKT-LAMEILGY--NFSMFGFSPYGSYWR 140 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~g~~w~ 140 (245)
.+++..+.++ ++||||+++++ ++.+.++++||+.+++++.++ .|.+++.. ........ ...+++. .+|+.|+
T Consensus 37 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~-~dg~~h~ 112 (417)
T 2y5n_A 37 LTLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGPSMTRDEPRTRPEMVKGGLLS-MDPPEHS 112 (417)
T ss_dssp CCCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGGGGTSCCCBSSSSCCCCSGGG-CCTTHHH
T ss_pred cCchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCccccccccccCcccccccCcc-CCchHHH
Confidence 5788999999 89999999997 889999999999999999653 36555322 10000111 1234544 4699999
Q ss_pred HHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHH-HHHHHHHHHHHHhcCCCCCCChH
Q 044206 141 EIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWF-TDTIRNVVLRMIVGKGCDSVDGE 219 (245)
Q Consensus 141 ~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~~ 219 (245)
++||+++++ |++++++.+.+.+.++++++++.|. .. +.++|+.+.+ ..+++++++. +||.+.+ +.+
T Consensus 113 ~~R~~l~~~-fs~~~l~~~~~~i~~~~~~ll~~l~------~~---~~~vdl~~~~~~~~~~~vi~~-~~G~~~~--~~~ 179 (417)
T 2y5n_A 113 RLRRLVVKA-FTARRAESLRPRAREIAHELVDQMA------AT---GQPADLVAMFARQLPVRVICE-LLGVPSA--DHD 179 (417)
T ss_dssp HHHHHHHHH-SCHHHHHHTHHHHHHHHHHHHHHHH------HH---CSSEEHHHHTTTTHHHHHHHH-HHTCCGG--GHH
T ss_pred HHHHHHhhh-cCHHHHHHHHHHHHHHHHHHHHHHH------hC---CCCeeHHHHHHHHhHHHHHHH-HcCCCHH--HHH
Confidence 999999986 8999999999999999999999993 11 1168998766 5699999998 6998764 334
Q ss_pred HHHHHHHH
Q 044206 220 EWIELLTR 227 (245)
Q Consensus 220 ~~~~~~~~ 227 (245)
++.+....
T Consensus 180 ~~~~~~~~ 187 (417)
T 2y5n_A 180 RFTRWSGA 187 (417)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 45444443
No 53
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=99.62 E-value=8.1e-15 Score=118.45 Aligned_cols=147 Identities=14% Similarity=0.108 Sum_probs=110.2
Q ss_pred CChhHHHHHHHHHhCCeeEEEe-CCeeEEEEcCHHHHHHHHhhCCccccCCCChh-hHHHhhcCCcc--eeeccCC----
Q 044206 65 EPSHWVLGKMADEYGPIFKIKM-GINRALVVSNWEMAKECLTTHDKVFASRPKTL-AMEILGYNFSM--FGFSPYG---- 136 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~g---- 136 (245)
.+++.++.++ ++||||+++++ ++.+.++++||+.+++++.++ .|.+++... ....... ..+ ++. .+|
T Consensus 26 ~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~-~~~~~l~~-~~g~~~~ 100 (404)
T 2xbk_A 26 LKLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE--RIGRTHPDPPSAAQYVR-SPFLDLLI-SDADAES 100 (404)
T ss_dssp TBCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT--TEESBCSSGGGSCCSSC-CHHHHTTC-BCSCHHH
T ss_pred cCccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC--CCCCCccccccCCcccc-ccccccee-eCCCCCC
Confidence 5688889999 89999999997 889999999999999999653 466554322 1111111 123 444 459
Q ss_pred --cchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHH-HHHHHHHHHHHHhcCCC
Q 044206 137 --SYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWF-TDTIRNVVLRMIVGKGC 213 (245)
Q Consensus 137 --~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~ 213 (245)
+.|+++||+++++ |++++++.+.+.+.++++++++.|. .. +.++|+.+.+ ..+++++++. +||.+.
T Consensus 101 ~~~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l~------~~---g~~~d~~~~~~~~~~~~vi~~-~~G~~~ 169 (404)
T 2xbk_A 101 GRRQHAETRRLLTPL-FSARRVLEMQPKVEEAADTLLDAFI------AQ---GPPGDLHGELTVPFALTVLCE-VIGVPP 169 (404)
T ss_dssp HHHHHHHHHHHHGGG-GCHHHHHHHHHHHHHHHHHHHHHHH------HT---CSSEEHHHHTHHHHHHHHHHH-HHTCCG
T ss_pred CCchHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHHHHHH------hc---CCCeeHHHHHHHHHHHHHHHH-HhCCCH
Confidence 9999999999986 8999999999999999999999993 21 3378998665 5799999997 799876
Q ss_pred CCCChHHHHHHHHHHh
Q 044206 214 DSVDGEEWIELLTRFS 229 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~ 229 (245)
+ +.+++.+.+..+.
T Consensus 170 ~--~~~~~~~~~~~~~ 183 (404)
T 2xbk_A 170 Q--RRAELTTLLAGIA 183 (404)
T ss_dssp G--GHHHHHHHHHHHT
T ss_pred H--HHHHHHHHHHHHH
Confidence 4 3345555555443
No 54
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=99.61 E-value=3.6e-15 Score=120.90 Aligned_cols=146 Identities=12% Similarity=0.060 Sum_probs=110.0
Q ss_pred CChhHHHHHHHHHhCCee-----EEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChh--hH-HHh-h-cCCcceeecc
Q 044206 65 EPSHWVLGKMADEYGPIF-----KIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTL--AM-EIL-G-YNFSMFGFSP 134 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~-----~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~--~~-~~~-~-~~~~~~~~~~ 134 (245)
.+++.++.+++ +||||+ ++.. .+.++++||+.+++++.++ ..|++++... .. ..+ + ....++++.
T Consensus 25 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~- 99 (414)
T 2uuq_A 25 PNPWPMYRALR-DHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGLTVNYGELEMIGLHDTPPMVMQ- 99 (414)
T ss_dssp TCCHHHHHHHH-HHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCSSSCTTHHHHHTCSSSCCGGGC-
T ss_pred cCchHHHHHHH-hcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCcccccCcccccccccccccccC-
Confidence 57888888885 689998 7765 6789999999999999765 5687775431 11 122 2 223455555
Q ss_pred CCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhH-HHHHHHHHHHHHHHHhcCCC
Q 044206 135 YGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMK-RWFTDTIRNVVLRMIVGKGC 213 (245)
Q Consensus 135 ~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~-~~~~~~~~~vi~~~~fG~~~ 213 (245)
+|+.|+++||++++. |++++++.+.+.+.++++++++.|. +.. .+|+. +++..+++|+++. +||.+.
T Consensus 100 ~g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l~------~~~----~vdl~~~~~~~~~~~vi~~-~~G~~~ 167 (414)
T 2uuq_A 100 DPPVHTEFRKLVSRG-FTPRQVETVEPTVRKFVVERLEKLR------ANG----GGDIVTELFKPLPSMVVAH-YLGVPE 167 (414)
T ss_dssp CTTHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHHHHHHH------HTT----EEEHHHHTTTHHHHHHHHH-HTTCCG
T ss_pred CchhHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHHHHHH------hcC----CccHHHHHHHHhHHHHHHH-HhCCCH
Confidence 599999999999985 8999999999999999999999993 222 68996 5668999999999 699877
Q ss_pred CCCChHHHHHHHHHHh
Q 044206 214 DSVDGEEWIELLTRFS 229 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~ 229 (245)
+ +.+++.+..+.+.
T Consensus 168 ~--~~~~~~~~~~~~~ 181 (414)
T 2uuq_A 168 E--DWTQFDGWTQAIV 181 (414)
T ss_dssp G--GHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHH
Confidence 5 3345555555443
No 55
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=99.61 E-value=7.5e-15 Score=119.01 Aligned_cols=145 Identities=18% Similarity=0.132 Sum_probs=108.2
Q ss_pred CChhHHHHHHHHHhCCeeEEEe-CCeeEEEEcCHHHHHHHHhhCCccccCCCChh-------hHHHhh---cCCcc-eee
Q 044206 65 EPSHWVLGKMADEYGPIFKIKM-GINRALVVSNWEMAKECLTTHDKVFASRPKTL-------AMEILG---YNFSM-FGF 132 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~-------~~~~~~---~~~~~-~~~ 132 (245)
.+++.++.+++ +||||+++++ |+.+.++++||+.+++++.++ .|++++... ...... .+ .+ +++
T Consensus 22 ~~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 97 (413)
T 2z36_A 22 FAPPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLADG--RFSSDKRKDGFPLFTLDAATLQQLRSQ-PPLMLG 97 (413)
T ss_dssp TBCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHCT--TEECCTTSTTCCCSSCCHHHHHHHTTS-CCCGGG
T ss_pred cCchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcCC--CcccCccccCccccccccccccccccc-cccccc
Confidence 57888999997 7899999997 889999999999999999653 566664221 111110 12 34 444
Q ss_pred ccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHH-HHHHHHHHHHHHhcC
Q 044206 133 SPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWF-TDTIRNVVLRMIVGK 211 (245)
Q Consensus 133 ~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~ 211 (245)
.+|+.|+++||+++++ |++.+++.+.+.+.++++++++.+ .+.. +.++|+.+.+ ..+++++++.+ ||.
T Consensus 98 -~~g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l------~~~~--~~~~d~~~~~~~~~~~~vi~~~-~G~ 166 (413)
T 2z36_A 98 -MDGAEHSAARRPVIGE-FTVKRLAALRPRIQDIVDHFIDDM------LATD--QRPVDLVQALSLPVPSLVICEL-LGV 166 (413)
T ss_dssp -CCHHHHHHHHHHHHGG-GSHHHHHHHHHHHHHHHHHHHHHH------TTCS--CSSEEHHHHTTTHHHHHHHHHH-HTC
T ss_pred -cCchHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHHH------HHhc--CCCccHHHHHhhhhHHHHHHHH-hCC
Confidence 4599999999999986 899999999999999999999998 3221 3378988655 47999999995 998
Q ss_pred CCCCCChHHHHHHHH
Q 044206 212 GCDSVDGEEWIELLT 226 (245)
Q Consensus 212 ~~~~~~~~~~~~~~~ 226 (245)
+.+ +.+++.+...
T Consensus 167 ~~~--~~~~~~~~~~ 179 (413)
T 2z36_A 167 PYT--DHDFFQSRTT 179 (413)
T ss_dssp CGG--GHHHHHHHHH
T ss_pred CHH--HHHHHHHHHH
Confidence 754 2334444443
No 56
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=99.60 E-value=2e-15 Score=122.40 Aligned_cols=149 Identities=15% Similarity=0.050 Sum_probs=110.1
Q ss_pred CChhHHHHHHHHHhCCeeEEEeCC--eeEEEEcCHHHHHHHHhhCCccccCCCChhhHHHhhc---C-CcceeeccCCcc
Q 044206 65 EPSHWVLGKMADEYGPIFKIKMGI--NRALVVSNWEMAKECLTTHDKVFASRPKTLAMEILGY---N-FSMFGFSPYGSY 138 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~~~--~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~g~~ 138 (245)
.+++..+.++++ ||||+++...| .+.+++++++.+++++. +...|++++.......... . ..++ +..+|+.
T Consensus 37 ~dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl~-~~~~fs~~~~~~~~~~~~~~~~~~~~~l-~~~dg~~ 113 (415)
T 3mgx_A 37 LERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVLA-PSAPLTSEYGMMIGFDRDHPDNSGGRMM-VVSEHEQ 113 (415)
T ss_dssp TTHHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHSC-TTSSEECTTCSSTTCCSSSCCTTTTTSG-GGCCHHH
T ss_pred CChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHHh-ChhhhcCCccccccccccccccccCCCc-cccCcHH
Confidence 578999999887 89999986445 78999999999999994 4456777654322111100 1 2233 4456999
Q ss_pred hHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHH-HHHHHHHHHHHHhcCCCCCCC
Q 044206 139 WREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWF-TDTIRNVVLRMIVGKGCDSVD 217 (245)
Q Consensus 139 w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~ 217 (245)
|+++||+++++ |++++++.+.+.+.++++++++.+ .+.+ .+|+.+++ ..+++++++. +||.+. ++
T Consensus 114 h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l------~~~~----~~dl~~~~~~~~~~~vi~~-l~G~~~--~~ 179 (415)
T 3mgx_A 114 HRKLRKLVGPL-LSRAAARKLAERVRIEVGDVLGRV------LDGE----VCDAATAIGPRIPAAVVCE-ILGVPA--ED 179 (415)
T ss_dssp HHHHHHHHGGG-SSHHHHHHSHHHHHHHHHHHTTTS------SSSS----CEESTTTTTTHHHHHHHHH-HHTCCG--GG
T ss_pred HHHHHHHhHhh-hCHHHHHHHHHHHHHHHHHHHHHH------HhcC----CcchHHHHHHHHHHHHHHH-HcCCCH--HH
Confidence 99999999986 899999999999999999988887 3322 68988777 6799999998 588653 23
Q ss_pred hHHHHHHHHHHhh
Q 044206 218 GEEWIELLTRFSE 230 (245)
Q Consensus 218 ~~~~~~~~~~~~~ 230 (245)
.+++.+..+.+..
T Consensus 180 ~~~~~~~~~~~~~ 192 (415)
T 3mgx_A 180 EDMLIDLTNHAFG 192 (415)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHc
Confidence 4566666666554
No 57
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=99.60 E-value=7.6e-15 Score=118.44 Aligned_cols=143 Identities=9% Similarity=0.044 Sum_probs=108.0
Q ss_pred CChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhHHHhhcCCcceeeccCCcchHHHHH
Q 044206 65 EPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAMEILGYNFSMFGFSPYGSYWREIRK 144 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~ 144 (245)
.+++.++.++++ ||||+++. . +.++++||+.+++++.++ ..|++++... .... ...+++.. +|+.|+++||
T Consensus 18 ~~p~~~~~~l~~-~Gpv~~~~--~-~~vvv~~~~~v~~vl~~~-~~f~~~~~~~-~~~~--~~~~l~~~-~g~~h~~~R~ 88 (398)
T 2xkr_A 18 REARAAYRWMRA-NQPVFRDR--N-GLAAASTYQAVIDAERQP-ELFSNAGGIR-PDQP--ALPMMIDM-DDPAHLLRRK 88 (398)
T ss_dssp TTHHHHHHHHHH-HCSEEECT--T-CCEEECSHHHHHHHHTCT-TTEESTTCSS-TTSC--CCSSGGGC-CTTHHHHHHH
T ss_pred cChhHHHHHHHh-cCCeeecC--C-CeEEEecHHHHHHHHhCc-ccccCccccC-Cccc--cccccccc-CchHHHHHHH
Confidence 678999999987 99998653 3 789999999999999654 3677765422 1111 12345444 5999999999
Q ss_pred HHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhH-HHHHHHHHHHHHHHHhcCCCCCCChHHHHH
Q 044206 145 IATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMK-RWFTDTIRNVVLRMIVGKGCDSVDGEEWIE 223 (245)
Q Consensus 145 ~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~-~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~ 223 (245)
++++. |++.+++.+.+.+.+.++++++.| .+.. .+|+. ++...+++|+++.+ ||.+.+ +.+++.+
T Consensus 89 ~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l------~~~~----~~d~~~~~~~~~~~~vi~~~-fG~~~~--~~~~~~~ 154 (398)
T 2xkr_A 89 LVNAG-FTRKRVKDKEASIAALCDTLIDAV------CERG----ECDFVRDLAAPLPMAVIGDM-LGVRPE--QRDMFLR 154 (398)
T ss_dssp HHGGG-SCHHHHHTTHHHHHHHHHHHHHTT------TTTS----EEEHHHHTTTHHHHHHHHHH-HTCCGG--GHHHHHH
T ss_pred Hhhhh-hCHHHHHHHHHHHHHHHHHHHHhh------hhcC----CccHHHHHHHHHHHHHHHHH-hCCCHH--HHHHHHH
Confidence 99986 899999999999999999998888 3322 68998 45568999999999 998764 3345666
Q ss_pred HHHHHhh
Q 044206 224 LLTRFSE 230 (245)
Q Consensus 224 ~~~~~~~ 230 (245)
....+..
T Consensus 155 ~~~~~~~ 161 (398)
T 2xkr_A 155 WSDDLVT 161 (398)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
No 58
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.59 E-value=1.4e-14 Score=117.44 Aligned_cols=149 Identities=18% Similarity=0.154 Sum_probs=109.9
Q ss_pred CChhHHHHHHHHHhCCeeEEEe-CCeeEEEEcCHHHHHHHHhhCCccccCCCC-hhhHH---------Hhh-cC-Cccee
Q 044206 65 EPSHWVLGKMADEYGPIFKIKM-GINRALVVSNWEMAKECLTTHDKVFASRPK-TLAME---------ILG-YN-FSMFG 131 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~~~~p~~~~~il~~~~~~~~~~~~-~~~~~---------~~~-~~-~~~~~ 131 (245)
.+++..+.++ ++||||+++++ ++.+.++++||+.+++++.++. +++++. ..... ..+ .. ..+++
T Consensus 17 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (411)
T 1gwi_A 17 TDLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPR--LVKDINVWGAWRRGEIPADWPLIGLANPGRSML 93 (411)
T ss_dssp SCHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTT--EECCGGGCHHHHTTCSCTTCTTHHHHSCCSSGG
T ss_pred CChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCCc--cccCcccccccccccCCcccchhhhhccccccc
Confidence 6789999999 99999999998 8899999999999999996543 343331 11000 000 01 22444
Q ss_pred eccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHH-HHHHHHHHHHHhc
Q 044206 132 FSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFT-DTIRNVVLRMIVG 210 (245)
Q Consensus 132 ~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~-~~~~~vi~~~~fG 210 (245)
..+|+.|+++||+++++ |++++++.+.+.+.++++++++.| .+ . +.++|+.+.+. .+++++++. +||
T Consensus 94 -~~~g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l------~~-~--~~~~d~~~~~~~~~~~~vi~~-~~G 161 (411)
T 1gwi_A 94 -TVDGAEHRRLRTLVAQA-LTVRRVEHMRGRITELTDRLLDEL------PA-D--GGVVDLKAAFAYPLPMYVVAD-LMG 161 (411)
T ss_dssp -GCCHHHHHHHHHHHTTT-SCHHHHHTTHHHHHHHHHHHHHTS------CC-S--CCCEEHHHHTTTHHHHHHHHH-HHT
T ss_pred -cCCcHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHH------HH-c--CCCcchHHHHhhHHHHHHHHH-HhC
Confidence 45699999999999986 899999999999999999988888 32 1 34799988876 599999996 799
Q ss_pred CCCCCCChHHHHHHHHHHhh
Q 044206 211 KGCDSVDGEEWIELLTRFSE 230 (245)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~ 230 (245)
.+.+ +.+++.+....+..
T Consensus 162 ~~~~--~~~~~~~~~~~~~~ 179 (411)
T 1gwi_A 162 IEEA--RLPRLKVLFEKFFS 179 (411)
T ss_dssp CCGG--GHHHHHHHHHHHHC
T ss_pred CCHH--HHHHHHHHHHHHhc
Confidence 8754 33455555555443
No 59
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=99.59 E-value=2.7e-15 Score=121.87 Aligned_cols=147 Identities=12% Similarity=0.093 Sum_probs=110.1
Q ss_pred CChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCC-----hh-h--HHHhhcC-CcceeeccC
Q 044206 65 EPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPK-----TL-A--MEILGYN-FSMFGFSPY 135 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~-----~~-~--~~~~~~~-~~~~~~~~~ 135 (245)
.+++..+.++ ++||||++ . ++.+.++++||+.+++++.++. |++++. .. . ...++.. ..++++. +
T Consensus 26 ~~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 99 (419)
T 1q5d_A 26 EDPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER--FAVSREEWESSAEYSSAIPELSDMKKYGLFGL-P 99 (419)
T ss_dssp TCCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT--EECCGGGSTTHHHHHHSSGGGHHHHHHSTTTS-C
T ss_pred hChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC--ccccccccccccccccccchhhhhcccccccC-C
Confidence 5788999998 68999998 5 7778999999999999997653 877761 11 1 0111100 1244444 5
Q ss_pred CcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHH-HHHHHHHHHHHHHHhcCCCC
Q 044206 136 GSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKR-WFTDTIRNVVLRMIVGKGCD 214 (245)
Q Consensus 136 g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~-~~~~~~~~vi~~~~fG~~~~ 214 (245)
|+.|+++||+++++ |++.+++.+.+.+.+++.++++.| .... ++|+.. +...+++|+++.+ ||.+.+
T Consensus 100 g~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l------~~~~----~~d~~~~~~~~~~~~vi~~~-fG~~~~ 167 (419)
T 1q5d_A 100 PEDHARVRKLVNPS-FTSRAIDLLRAEIQRTVDQLLDAR------SGQE----EFDVVRDYAEGIPMRAISAL-LKVPAE 167 (419)
T ss_dssp HHHHHHHHHHHGGG-GSHHHHGGGHHHHHHHHHHHHHHH------TTSS----CEETTTTTGGGSHHHHHHHH-TTCCGG
T ss_pred chHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHH------HhcC----CCCHHHHHHHHHHHHHHHHH-hCCCHH
Confidence 99999999999986 899999999999999999999998 3322 688875 4589999999998 998764
Q ss_pred CCChHHHHHHHHHHhhc
Q 044206 215 SVDGEEWIELLTRFSEM 231 (245)
Q Consensus 215 ~~~~~~~~~~~~~~~~~ 231 (245)
+.+++.+..+.+...
T Consensus 168 --~~~~~~~~~~~~~~~ 182 (419)
T 1q5d_A 168 --CDEKFRRFGSATARA 182 (419)
T ss_dssp --GHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHh
Confidence 334566666655543
No 60
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=99.57 E-value=1e-14 Score=118.19 Aligned_cols=135 Identities=11% Similarity=0.074 Sum_probs=102.7
Q ss_pred CChhHHHHHHHHHhCCeeEEEeCC--eeEEEEcCHHHHHHHHhhCCccccCCCChh-----hHHHhhcCCcceeeccCCc
Q 044206 65 EPSHWVLGKMADEYGPIFKIKMGI--NRALVVSNWEMAKECLTTHDKVFASRPKTL-----AMEILGYNFSMFGFSPYGS 137 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~~~--~~~v~~~~p~~~~~il~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~ 137 (245)
++++..+.+++ +||||+++.+++ .+.+++++|+.+++++.+ ..|.+++... .....+....+++ ..+|+
T Consensus 27 ~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~l~-~~dg~ 102 (411)
T 2dkk_A 27 PEFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITND--PRFGRAEVTQRQITRLAPHFKPRPGSLA-FADQP 102 (411)
T ss_dssp SCCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTC--TTEESGGGGGSCBCBSSSCCCCCTTCST-TCCTT
T ss_pred ccccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcC--CCcccCCCCCCCccccccchhccccccc-cCCch
Confidence 56778888887 799999999754 789999999999999954 3566553221 0011110023444 44699
Q ss_pred chHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHH-HHHHHHHHHHHhcCCCC
Q 044206 138 YWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFT-DTIRNVVLRMIVGKGCD 214 (245)
Q Consensus 138 ~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~-~~~~~vi~~~~fG~~~~ 214 (245)
.|+++||+++++ |++++++.+.+.+.+.++++++.|.+ . +.++|+.+.+. .+++|+++. +||.+.+
T Consensus 103 ~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~~------~---g~~~dl~~~~~~~~~~~vi~~-l~G~~~~ 169 (411)
T 2dkk_A 103 DHNRLRRAVAGA-FTVGATKRLRPRAQEILDGLVDGILA------E---GPPADLVERVLEPFPIAVVSE-VMGVPAA 169 (411)
T ss_dssp HHHHHHHHHGGG-SSHHHHHHHHHHHHHHHHHHHHHHHH------H---CSCEEHHHHTTTHHHHHHHHH-HHTCCSS
T ss_pred HHHHHHHHhhHh-hCHHHHHHHHHHHHHHHHHHHHHHHh------c---CCCeehHHHHHHHHHHHHHHH-HhCCCHH
Confidence 999999999986 99999999999999999999999942 1 23789987775 799999998 5998764
No 61
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=99.57 E-value=8.5e-15 Score=119.99 Aligned_cols=148 Identities=11% Similarity=0.074 Sum_probs=110.0
Q ss_pred hhHHHHHHHHHhCCee--EEE-eCCeeEEEEcCHHHHHHHHhhCCccccCCCChhh-----HH-----Hhhc---CCcce
Q 044206 67 SHWVLGKMADEYGPIF--KIK-MGINRALVVSNWEMAKECLTTHDKVFASRPKTLA-----ME-----ILGY---NFSMF 130 (245)
Q Consensus 67 ~~~~~~~~~~~yG~v~--~~~-~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~-----~~-----~~~~---~~~~~ 130 (245)
++..+.++ ++||||+ ++. .++.+.+++++++.+++++.+. ..|++++.... .. ..++ ...++
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~l 124 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDN-ATFLNNPKSTVFTLRVGEMMAKAITGGSPHLVESL 124 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCT-TTEESSSSCSSCCCHHHHHHHHHHHTSCSCSSCCG
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCc-ccccCCCccccccccccccccccccccccccccCc
Confidence 77888888 6789999 887 6788999999999999999544 66877754221 00 1111 11234
Q ss_pred eeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHH-HHHHHHHHHHHHh
Q 044206 131 GFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWF-TDTIRNVVLRMIV 209 (245)
Q Consensus 131 ~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~f 209 (245)
+..+|+.|+++||++++. |++++++.+.+.+.++++++++.+. +. +.++|+.+.+ ..+++++|+.+ |
T Consensus 125 -~~~dg~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l~------~~---~~~~dl~~~~~~~~~~~vi~~l-~ 192 (450)
T 3tkt_A 125 -VQMDAPKHPKLRRLTQDW-FMPKNLARLDGEIRKIANEAIDRML------GA---GEEGDFMALVAAPYPLHVVMQI-L 192 (450)
T ss_dssp -GGCCTTHHHHHHHHHHTT-TSHHHHGGGHHHHHHHHHHHHHHHH------HT---CSEEEHHHHTTTHHHHHHHHHH-T
T ss_pred -ccCCCHHHHHHHHHhhhh-hCHHHHHHHHHHHHHHHHHHHHHHH------hc---CCCEeeHHHHHHHHHHHHHHHH-c
Confidence 445699999999999985 8999999999999999999999993 21 2379988877 69999999996 8
Q ss_pred cCCCCCCChHHHHHHHHHHhh
Q 044206 210 GKGCDSVDGEEWIELLTRFSE 230 (245)
Q Consensus 210 G~~~~~~~~~~~~~~~~~~~~ 230 (245)
|.+.+ +.+++.+..+.+..
T Consensus 193 G~~~~--~~~~~~~~~~~~~~ 211 (450)
T 3tkt_A 193 GVPPE--DEPKMLFLTQQMFG 211 (450)
T ss_dssp TCCGG--GHHHHHHHHHTTSC
T ss_pred CCChh--HHHHHHHHHHHHhc
Confidence 96543 33455555555443
No 62
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=99.57 E-value=3.6e-14 Score=115.21 Aligned_cols=145 Identities=11% Similarity=0.082 Sum_probs=105.5
Q ss_pred CChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhHHHhh--------cCCcceeeccCC
Q 044206 65 EPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAMEILG--------YNFSMFGFSPYG 136 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g 136 (245)
.+++.++.++ ++||||+++..| .+++++|+.+++++.+ ...+++++......... ....+++.. +|
T Consensus 29 ~~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-dg 102 (418)
T 3r9b_A 29 ADPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRH-PSSCSDRTKSTIFQRQLAAETQPRPQGPASFLFL-DP 102 (418)
T ss_dssp TCCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHC-TTEECCGGGCHHHHHHHC---------CCCGGGC-CT
T ss_pred cCchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcC-cccccCcccccccccccccccccccccccchhhc-CC
Confidence 6899999888 578999987765 8999999999999954 34445554332221111 112344444 59
Q ss_pred cchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHH-HHHHHHHHHHHHHhcCCCCC
Q 044206 137 SYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRW-FTDTIRNVVLRMIVGKGCDS 215 (245)
Q Consensus 137 ~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~-~~~~~~~vi~~~~fG~~~~~ 215 (245)
+.|+++||++++. |++++++.+.+.+.++++++++ + .+.. .+|+.+. ...+++++++. +||.+.+
T Consensus 103 ~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~-l------~~~~----~~d~~~~~~~~~~~~vi~~-~~G~~~~- 168 (418)
T 3r9b_A 103 PDHTRLRGLVSKA-FAPRVIKRLEPEITALVDQLLD-A------VDGP----EFNLIDNLAYPLPVAVICR-LLGVPIE- 168 (418)
T ss_dssp THHHHHHHHHHGG-GSHHHHGGGHHHHHHHHHHHHH-T------CCSS----EEEHHHHTTTHHHHHHHHH-HHTCCGG-
T ss_pred chHHHHHHHhhhh-hCHHHHHHHHHHHHHHHHHHHh-h------hccC----CeehHHHHhCcCCHHHHHH-HcCCCHH-
Confidence 9999999999985 8999999999999999999988 7 3322 7887654 46899999999 8998764
Q ss_pred CChHHHHHHHHHHhh
Q 044206 216 VDGEEWIELLTRFSE 230 (245)
Q Consensus 216 ~~~~~~~~~~~~~~~ 230 (245)
+.+++.+....+..
T Consensus 169 -~~~~~~~~~~~~~~ 182 (418)
T 3r9b_A 169 -DEPKFSRASALLAA 182 (418)
T ss_dssp -GHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHh
Confidence 33455555555443
No 63
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=99.55 E-value=3.6e-14 Score=114.43 Aligned_cols=146 Identities=12% Similarity=0.023 Sum_probs=106.5
Q ss_pred CChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhH-------HHhhcCCcceeeccCCc
Q 044206 65 EPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAM-------EILGYNFSMFGFSPYGS 137 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~ 137 (245)
.+++.++.++ ++||||++ . |.+.++++||+.+++++.+ ..|++++..... ...+....+++.. +|+
T Consensus 13 ~~p~~~~~~l-~~yGpv~~-~--g~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~ 85 (397)
T 3buj_A 13 RDPYPSYHWL-LRHDPVHR-G--AHRVWYVSRFADVRAVLGD--ERFARTGIRRFWTDLVGPGLLAEIVGDIILFQ-DEP 85 (397)
T ss_dssp HCCHHHHHHH-HHHCSEEE-C--GGGCEEECSHHHHHHHHTC--TTEESHHHHHHHHHHHCSSHHHHHHTTCGGGC-CTT
T ss_pred cCchHHHHHH-HhcCCeee-C--CCCeEEEcCHHHHHHHHcC--CCcccCcccccccccccccccccccccccccC-Cch
Confidence 4677888776 58999998 6 6789999999999999964 356654321100 0111102345444 599
Q ss_pred chHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHH-HHHHHHHHHHHHHHhcCCCCCC
Q 044206 138 YWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKR-WFTDTIRNVVLRMIVGKGCDSV 216 (245)
Q Consensus 138 ~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~-~~~~~~~~vi~~~~fG~~~~~~ 216 (245)
.|+++||++++. |++++++.+.+.+.++++++++.+ ... .++|+.+ +...+++++++.+ ||.+.+
T Consensus 86 ~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l------~~~----~~~dl~~~~~~~~~~~vi~~~-~G~~~~-- 151 (397)
T 3buj_A 86 DHGRLRGVVGPA-FSPSALRRLEPVIAGTVDDLLRPA------LAR----GAMDVVDELAYPLALRAVLGL-LGLPAA-- 151 (397)
T ss_dssp HHHHHHHHHGGG-SSTTTTGGGHHHHHHHHHHHHHHH------HTT----TEEEHHHHTHHHHHHHHHHHH-HTCCGG--
T ss_pred hHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHH------hhc----CCeehHHHHHHHhHHHHHHHH-hCCCHH--
Confidence 999999999985 899999999999999999999999 322 2789865 4578999999999 998764
Q ss_pred ChHHHHHHHHHHhhc
Q 044206 217 DGEEWIELLTRFSEM 231 (245)
Q Consensus 217 ~~~~~~~~~~~~~~~ 231 (245)
+.+++.+....+...
T Consensus 152 ~~~~~~~~~~~~~~~ 166 (397)
T 3buj_A 152 DWGAVGRWSRDVGRT 166 (397)
T ss_dssp GHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhh
Confidence 334566665555543
No 64
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=99.54 E-value=9.8e-14 Score=112.74 Aligned_cols=150 Identities=13% Similarity=0.013 Sum_probs=109.1
Q ss_pred CChhHHHHHHHHHhC-CeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhHHHhhcCCcceeeccCCcchHHHH
Q 044206 65 EPSHWVLGKMADEYG-PIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAMEILGYNFSMFGFSPYGSYWREIR 143 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG-~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R 143 (245)
.+++.++.++++++| ||+++..++ +.++++||+.+++++ ++...|++++.............++ +..+|+.|+++|
T Consensus 38 ~dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~~~~~~~-~~~dg~~h~~~R 114 (421)
T 3lxh_A 38 QGFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIY-RSPERFSSRVIWVPREAGEAYDMVP-TKLDPPEHTPYR 114 (421)
T ss_dssp GCHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHH-TCTTTEETTCCSSSHHHHHHCCCTT-TTCCTTTHHHHH
T ss_pred cChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHH-cChhhccCCcccCCcccccccccCC-ccCCcHHHHHHH
Confidence 578999999887765 899998766 488999999999999 4556787776432222222122233 444699999999
Q ss_pred HHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHH-HHHHHHHHHHHHhcCCCCCCChHHHH
Q 044206 144 KIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWF-TDTIRNVVLRMIVGKGCDSVDGEEWI 222 (245)
Q Consensus 144 ~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~ 222 (245)
|++++. |++++++.+.+.+.+.++++++.| .... .+|+...+ ..++.++++. +||.+.+ +.+++.
T Consensus 115 ~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l------~~~~----~~d~~~~~~~~~~~~v~~~-~~G~~~~--~~~~~~ 180 (421)
T 3lxh_A 115 KAIDKG-LNLAEIRKLEDQIRTIAVEIIEGF------ADRG----HCEFGSEFSTVFPVRVFLA-LAGLPVE--DATKLG 180 (421)
T ss_dssp HHHHHH-HSHHHHHTTHHHHHHHHHHHHHTT------TTTS----EEEHHHHTTTTHHHHHHHH-HHTCCGG--GHHHHH
T ss_pred HHHhhh-cCHHHHHHHHHHHHHHHHHHHHHH------hhcC----CeehHHHHHHHHHHHHHHH-HcCCCHH--HHHHHH
Confidence 999986 899999999999999999988888 3322 67865544 6688888876 5887653 345666
Q ss_pred HHHHHHhhc
Q 044206 223 ELLTRFSEM 231 (245)
Q Consensus 223 ~~~~~~~~~ 231 (245)
+....+...
T Consensus 181 ~~~~~~~~~ 189 (421)
T 3lxh_A 181 LLANEMTRP 189 (421)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHhcc
Confidence 666665543
No 65
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=99.54 E-value=3.8e-14 Score=114.26 Aligned_cols=147 Identities=9% Similarity=0.023 Sum_probs=107.4
Q ss_pred CChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhHHHhhcCCcceeeccCCcchHHHHH
Q 044206 65 EPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAMEILGYNFSMFGFSPYGSYWREIRK 144 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~ 144 (245)
.+++.++.+++++ |||+++..++ +.++++||+.+++++.+ ...|++++.............+ ++..+|+.|+++||
T Consensus 24 ~~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~-~~~f~~~~~~~~~~~~~~~~~~-~~~~~g~~h~~~R~ 99 (396)
T 3oft_A 24 QDYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGD-AERLSSQCLAVTPGLGKVMQFI-PLQQDGAEHKAFRT 99 (396)
T ss_dssp TCHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHC-TTTEESTTCCSSTTHHHHHCCT-TTTCCHHHHHHHHH
T ss_pred cChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcC-cccccCCcccCCCccccccccC-ccccCCcHHHHHHH
Confidence 6899999999999 9999998874 48889999999999954 4567777632211111111123 34456999999999
Q ss_pred HHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHH-HHHHHHHHHHHHhcCCCCCCChHHHHH
Q 044206 145 IATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWF-TDTIRNVVLRMIVGKGCDSVDGEEWIE 223 (245)
Q Consensus 145 ~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~ 223 (245)
++++. |++++++.+.+.+.+.++++++.| .+.. .+|+...+ ..++.++++. +||.+.+ +.+++.+
T Consensus 100 ~~~~~-f~~~~l~~~~~~i~~~~~~l~~~l------~~~~----~~d~~~~~~~~~~~~v~~~-~~G~~~~--~~~~~~~ 165 (396)
T 3oft_A 100 PVMKG-LASRFVVALEPKVQAVARKLMESL------RPRG----SCDFVSDFAEILPLNIFLT-LIDVPLE--DRPRLRQ 165 (396)
T ss_dssp HHHHH-TCHHHHHHHHHHHHHHHHHHHHHH------GGGS----EEEHHHHTTTTHHHHHHHH-HTTCCGG--GHHHHHH
T ss_pred Hhhhh-hCHHHHHHHHHHHHHHHHHHHHHh------hhcC----CccHHHHHHHHHHHHHHHH-HcCCCHH--HHHHHHH
Confidence 99986 899999999999999999999998 4332 57876555 6677787776 6886543 3345555
Q ss_pred HHHHHh
Q 044206 224 LLTRFS 229 (245)
Q Consensus 224 ~~~~~~ 229 (245)
....+.
T Consensus 166 ~~~~~~ 171 (396)
T 3oft_A 166 LGVQLT 171 (396)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555554
No 66
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=99.52 E-value=1.7e-14 Score=116.36 Aligned_cols=145 Identities=13% Similarity=0.139 Sum_probs=106.5
Q ss_pred CChhHHHHHHHHHhCCeeEEEe-CCeeEEEEcCHHHHHHHHhhCCcccc-C-CCCh--hhH---HHhhcCCcceeeccCC
Q 044206 65 EPSHWVLGKMADEYGPIFKIKM-GINRALVVSNWEMAKECLTTHDKVFA-S-RPKT--LAM---EILGYNFSMFGFSPYG 136 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~~~~p~~~~~il~~~~~~~~-~-~~~~--~~~---~~~~~~~~~~~~~~~g 136 (245)
.+++..+.++ ++||||+++.+ ++.+.++++||+.+++++.++ .|. + ++.. ... ........++++.
T Consensus 16 ~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 89 (396)
T 1n40_A 16 DRIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFSMKETAAAGAPRLNALTVPPEVVNNMGNI--- 89 (396)
T ss_dssp SSCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEESGGGGSTTCCCSSCCSSCGGGGGHHHHH---
T ss_pred cCccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--CcccccCccccccccccccCCchhhhhhhhH---
Confidence 5789999999 99999999998 789999999999999999654 355 4 3321 100 0000011233332
Q ss_pred cchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHH-HHHHHHHHHHHHhcCCCCC
Q 044206 137 SYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWF-TDTIRNVVLRMIVGKGCDS 215 (245)
Q Consensus 137 ~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~ 215 (245)
.|+++||++++. |++. ++.+.+.+.++++++++.+. +. +.++|+.+.+ ..+++++++. +||.+.+
T Consensus 90 -~h~~~R~~~~~~-fs~~-~~~~~~~i~~~~~~l~~~l~------~~---~~~~d~~~~~~~~~~~~vi~~-~~G~~~~- 155 (396)
T 1n40_A 90 -ADAGLRKAVMKA-ITPK-APGLEQFLRDTANSLLDNLI------TE---GAPADLRNDFADPLATALHCK-VLGIPQE- 155 (396)
T ss_dssp -HHTTCHHHHHHH-TSSC-STTHHHHHHHHHHHHHHHHH------HH---CSCEETTTTTHHHHHHHHHHH-HHTCCGG-
T ss_pred -HHHHHHHHHHHh-hChH-HHHhHHHHHHHHHHHHHHHH------hc---CCCccHHHHHHHHhHHHHHHH-HhCCChh-
Confidence 899999999986 8999 99999999999999999984 21 2278988655 5899999999 8998764
Q ss_pred CChHHHHHHHHHHhh
Q 044206 216 VDGEEWIELLTRFSE 230 (245)
Q Consensus 216 ~~~~~~~~~~~~~~~ 230 (245)
+.+++.+..+.+..
T Consensus 156 -~~~~~~~~~~~~~~ 169 (396)
T 1n40_A 156 -DGPKLFRSLSIAFM 169 (396)
T ss_dssp -GHHHHHHTHHHHTB
T ss_pred -hHHHHHHHHHHHhc
Confidence 33456666555544
No 67
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=99.51 E-value=2.2e-14 Score=117.18 Aligned_cols=147 Identities=12% Similarity=0.110 Sum_probs=98.0
Q ss_pred CChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhHHHhhcCCcceeeccCCcchHHHHH
Q 044206 65 EPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAMEILGYNFSMFGFSPYGSYWREIRK 144 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~ 144 (245)
.+++.++.++ ++||||+++..++ .+++++|+.+++++.++. .|++++......... +..++ +..+|+.|+++||
T Consensus 53 ~~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~-~~~~l-~~~dg~~h~~~Rr 126 (441)
T 3nc3_A 53 NNPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPD-IFTTKSLVERAEPVM-RGPVL-AQMHGKEHSAKRR 126 (441)
T ss_dssp HCGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTT-TEECCCTTSCCCCSC-C--------------CCHH
T ss_pred cChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCcc-ccccccccccccccc-CCCcc-ccCCcHHHHHHHH
Confidence 4677778776 6899999987655 899999999999996654 477665432211111 21234 4445999999999
Q ss_pred HHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchh-HHHHHHHHHHHHHHHHhcCCCCCCChHHHHH
Q 044206 145 IATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEM-KRWFTDTIRNVVLRMIVGKGCDSVDGEEWIE 223 (245)
Q Consensus 145 ~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~ 223 (245)
++++. |++++++.+.+.+.+.++++++.| .+.. .+|+ .++...+++++++. +||.+.+ +.+++.+
T Consensus 127 ~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l------~~~~----~~dl~~~~~~~~~~~vi~~-l~G~~~~--~~~~~~~ 192 (441)
T 3nc3_A 127 IVVRS-FIGDALDHLSPLIKQNAENLLAPY------LERG----KSDLVNDFGKTFAVCVTMD-MLGLDKR--DHEKISE 192 (441)
T ss_dssp HHHHH-HHHTHHHHHHHHHHHHHHHHHTTT------TTTT----EEECCCCCHHHHHHHHHHH-HTTCCGG--GHHHHHH
T ss_pred HHHhh-cCHHHHHHHHHHHHHHHHHHHHHH------HhcC----CCcHHHHHHHHHHHHHHHH-HcCCCHH--HHHHHHH
Confidence 99986 899999999999999999988888 3322 6786 45556799999999 5897653 3345656
Q ss_pred HHHHHhhc
Q 044206 224 LLTRFSEM 231 (245)
Q Consensus 224 ~~~~~~~~ 231 (245)
....+...
T Consensus 193 ~~~~~~~~ 200 (441)
T 3nc3_A 193 WHSGVADF 200 (441)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555443
No 68
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=99.50 E-value=6e-14 Score=113.18 Aligned_cols=141 Identities=11% Similarity=0.179 Sum_probs=98.9
Q ss_pred HHHHHHHhCCeeEEEeC-Ce---eEEEEcCHHHHHHHHhhCCccccCCCC------hh---hHHHhhcCCcceeeccCCc
Q 044206 71 LGKMADEYGPIFKIKMG-IN---RALVVSNWEMAKECLTTHDKVFASRPK------TL---AMEILGYNFSMFGFSPYGS 137 (245)
Q Consensus 71 ~~~~~~~yG~v~~~~~~-~~---~~v~~~~p~~~~~il~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~g~ 137 (245)
+.+++++ |||+++.++ |. +.++++||+.+++++.++ ..|++++. .. .......+ .+++.. +|+
T Consensus 19 ~~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~-~g~ 94 (398)
T 1lfk_A 19 ADELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDH-QQFSTRRRWDPRDEIGGKGIFRPRELV-GNLMDY-DPP 94 (398)
T ss_dssp CHHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCT-TTEEECTTCCC-------------CCT-TCGGGC-CTT
T ss_pred hHHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhC-cccccccccccccccCCcccccccccc-cCcccc-CCH
Confidence 3446666 999999875 55 899999999999999433 34666653 11 11111112 345444 599
Q ss_pred chHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHHH-HHHHHHHHHHhcCCCCCC
Q 044206 138 YWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTD-TIRNVVLRMIVGKGCDSV 216 (245)
Q Consensus 138 ~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~-~~~~vi~~~~fG~~~~~~ 216 (245)
.|+++||+++++ |++++++.+.+.+.++++++++.|. +. +.++|+.+++.. +++++++. +||.+.+
T Consensus 95 ~~~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~l~~~l~------~~---~~~~d~~~~~~~~~~~~vi~~-~~G~~~~-- 161 (398)
T 1lfk_A 95 EHTRLRRKLTPG-FTLRKMQRMAPYIEQIVNDRLDEME------RA---GSPADLIAFVADKVPGAVLCE-LVGVPRD-- 161 (398)
T ss_dssp HHHHHHHHHGGG-GCHHHHHHHHHHHHHHHHHHHHHHH------HH---CSSEEHHHHTTTTHHHHHHHH-HHTCCGG--
T ss_pred HHHHHHHHHHhh-hCHHHHHHHHHHHHHHHHHHHHHHH------hc---CCCccHHHHHHHHHHHHHHHH-HcCCCHH--
Confidence 999999999986 8999999999999999999999993 21 237899999886 99999998 5998764
Q ss_pred ChHHHHHHHHHH
Q 044206 217 DGEEWIELLTRF 228 (245)
Q Consensus 217 ~~~~~~~~~~~~ 228 (245)
+.+++.+....+
T Consensus 162 ~~~~~~~~~~~~ 173 (398)
T 1lfk_A 162 DRDMFMKLCHGH 173 (398)
T ss_dssp GHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 334555555443
No 69
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=99.48 E-value=1e-13 Score=109.67 Aligned_cols=128 Identities=14% Similarity=0.103 Sum_probs=95.9
Q ss_pred HHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhHHHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhh
Q 044206 76 DEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAMEILGYNFSMFGFSPYGSYWREIRKIATLELLSNHR 155 (245)
Q Consensus 76 ~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~ 155 (245)
++||||+++ | .++++||+.+++++.++ ..|++++....... +..++++. +|+.|+++||+++++ |++.+
T Consensus 2 r~~gpv~~~---g--~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~---~~~~l~~~-~g~~~~~~R~~~~~~-fs~~~ 70 (343)
T 2rfb_A 2 RLNDPVHYD---G--AWHVYKYSDVKHVLMND-KIFSSNPGNRYSNA---GGISFITM-DNPEHKEFRDISAPY-FLPSK 70 (343)
T ss_dssp -CCCCEEET---T--EEEECSHHHHHHHHHCT-TTEESSCSSCCC------CCGGGGC-CHHHHHHHHHHHHHH-HSHHH
T ss_pred CCcCCeeee---C--eEEEcCHHHHHHHHhCh-hhcccCCcCCCCCc---cccccccC-CchHHHHHHHHhhhh-cCHHH
Confidence 579999876 4 89999999999999764 46777752110111 22355544 599999999999986 89999
Q ss_pred hhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHH-HHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhh
Q 044206 156 LGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWF-TDTIRNVVLRMIVGKGCDSVDGEEWIELLTRFSE 230 (245)
Q Consensus 156 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~ 230 (245)
++.+.+.+.++++++++.| . ++|+.+.+ ..+++|+++.+ ||.+.+ +.+++.+..+.+..
T Consensus 71 l~~~~~~i~~~~~~l~~~l------~-------~~d~~~~~~~~~~~~vi~~~-~G~~~~--~~~~~~~~~~~~~~ 130 (343)
T 2rfb_A 71 INDYKDFIEETSNDLIKNI------D-------NKDIISEYAVRLPVNIISKI-LGIPDS--DMPLFKLWSDYIIG 130 (343)
T ss_dssp HGGGHHHHHHHHHHHHTTC------T-------TSCHHHHTTTHHHHHHHHHH-HTCCGG--GHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhc------c-------ccCHHHHHhhhhhHHHHHHH-cCCCHH--HHHHHHHHHHHHhh
Confidence 9999999999999888877 3 57888765 89999999999 998764 33456666555543
No 70
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=99.46 E-value=7.2e-13 Score=107.78 Aligned_cols=146 Identities=10% Similarity=0.087 Sum_probs=104.2
Q ss_pred CChhHHHHHHHHHhCCeeEEEe-CCeeEEEEcCHHHHHHHHhhCCccccCCCC---hhhH------HHhhcCCcceeecc
Q 044206 65 EPSHWVLGKMADEYGPIFKIKM-GINRALVVSNWEMAKECLTTHDKVFASRPK---TLAM------EILGYNFSMFGFSP 134 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~~~~p~~~~~il~~~~~~~~~~~~---~~~~------~~~~~~~~~~~~~~ 134 (245)
++++.++.+++++ |||+++.. ++.+.+++++++.+++++.+. ..|++++. .... ........++ +..
T Consensus 38 ~~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~ 114 (426)
T 3rwl_A 38 DSVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNH-DIFSSDAGYGGIIIDDGIQKGGDGGLDLPNF-IAM 114 (426)
T ss_dssp TCHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCT-TTEECCGGGTCSSSSCCC-------CCCCCG-GGC
T ss_pred CCccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCC-cccccccccCCCCcccccccccccccccCcc-ccc
Confidence 5789999999876 99999987 567799999999999999544 45655431 1100 0011122233 445
Q ss_pred CCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHH-HHHHHHHHHHHHhcCCC
Q 044206 135 YGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWF-TDTIRNVVLRMIVGKGC 213 (245)
Q Consensus 135 ~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~ 213 (245)
+|+.|+++||++++. |++++++.+.+.+.+.+.++++.+ .. +.++|+...+ ..+++++++. +||.+.
T Consensus 115 dg~~h~~~R~~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l------~~----~~~~dl~~~~~~~~~~~vi~~-l~G~~~ 182 (426)
T 3rwl_A 115 DRPRHDEQRKAVSPI-VAPANLAALEGTIRERVSKTLDGL------PV----GEEFDWVDRVSIEITTQMLAT-LFDFPF 182 (426)
T ss_dssp CTTHHHHHHHHHGGG-GCHHHHHHHHHHHHHHHHHHHHTS------CS----SSCEEHHHHTHHHHHHHHHHH-HHTCCG
T ss_pred CchHHHHHHHHhhhh-hCHHHHHHHHHHHHHHHHHHHHHh------hc----CCCcchHHHHHHHHHHHHHHH-HcCCCH
Confidence 699999999999986 899999999999999999988887 33 2378977666 6888998886 899754
Q ss_pred CCCChHHHHHHHHH
Q 044206 214 DSVDGEEWIELLTR 227 (245)
Q Consensus 214 ~~~~~~~~~~~~~~ 227 (245)
+ +.+.+.+..+.
T Consensus 183 ~--~~~~~~~~~~~ 194 (426)
T 3rwl_A 183 E--ERRKLTRWSDV 194 (426)
T ss_dssp G--GTHHHHHHHHH
T ss_pred H--HHHHHHHHHHH
Confidence 3 33444444433
No 71
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=99.45 E-value=3.8e-13 Score=107.33 Aligned_cols=138 Identities=14% Similarity=0.055 Sum_probs=100.9
Q ss_pred hHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCC-hh-hH-----H-HhhcC--CcceeeccCCc
Q 044206 68 HWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPK-TL-AM-----E-ILGYN--FSMFGFSPYGS 137 (245)
Q Consensus 68 ~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~-~~-~~-----~-~~~~~--~~~~~~~~~g~ 137 (245)
+..+.++ ++||||+++. | .+++++|+.+++++.++ ..|++++. .. .. . ...+. ..++++. +|+
T Consensus 2 ~~~~~~l-r~~gpv~~~~--g--~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-dg~ 74 (367)
T 3b4x_A 2 YDWFKQM-RKESPVYYDG--K--VWNLFKYEDCKMVLNDH-KRFSSNLTGYNDKLEMLRSGKVFFDIPTRYTMLTS-DPP 74 (367)
T ss_dssp HHHHHHH-HHHCSEEECS--S--SEEECSHHHHHHHHHCT-TTEECCCSSTTTTHHHHHHTCCCCCCGGGSSGGGC-CTT
T ss_pred CHHHHHH-HHcCCceeeC--C--EEEEecHHHHHHHHcCc-hhhccCcccccccccccccccchhhcccccccccC-Cch
Confidence 4566677 4799999887 3 79999999999999754 46777642 11 11 1 11110 1355555 599
Q ss_pred chHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHH-HHHHHHHHHHHHhcCCCCCC
Q 044206 138 YWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWF-TDTIRNVVLRMIVGKGCDSV 216 (245)
Q Consensus 138 ~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~~~ 216 (245)
.|+++||+++++ |++++++. +.+.+.++++++.+ . + .+|+.+.+ ..+++|+++. +||.+ +
T Consensus 75 ~h~~~R~~~~~~-fs~~~l~~--~~i~~~~~~l~~~l------~--g----~~d~~~~~~~~~~~~vi~~-~~G~~-~-- 135 (367)
T 3b4x_A 75 LHDELRNLTADA-FNPSNLPV--DFVREVTVKLLSEL------D--E----EFDVIESFAIPLPILVISK-MLGIN-P-- 135 (367)
T ss_dssp HHHHHHHTTGGG-GSGGGSCH--HHHHHHHHHHHHTC------C--S----EEEHHHHTTTHHHHHHHHH-HHTCC-C--
T ss_pred hHHHHHHHHHHh-cCHhhhcc--hHHHHHHHHHHHhc------c--C----CcchHHHHHHhhHHHHHHH-HcCCC-C--
Confidence 999999999986 89999988 88888888888877 3 2 48998765 8999999999 79998 4
Q ss_pred ChHHHHHHHHHHhhc
Q 044206 217 DGEEWIELLTRFSEM 231 (245)
Q Consensus 217 ~~~~~~~~~~~~~~~ 231 (245)
+.+++.+..+.+...
T Consensus 136 ~~~~~~~~~~~~~~~ 150 (367)
T 3b4x_A 136 DVKKVKDWSDLVALR 150 (367)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhc
Confidence 445676766665543
No 72
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=99.45 E-value=2e-13 Score=109.01 Aligned_cols=127 Identities=14% Similarity=0.125 Sum_probs=94.8
Q ss_pred hHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCC--h-hhHH----H--hhcCC-cceeeccCCc
Q 044206 68 HWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPK--T-LAME----I--LGYNF-SMFGFSPYGS 137 (245)
Q Consensus 68 ~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~--~-~~~~----~--~~~~~-~~~~~~~~g~ 137 (245)
+..+.++ ++||||+++ | +.++++||+.+++++.+ ...|++++. . .... . .+... .++... +|+
T Consensus 2 ~~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~g~ 74 (368)
T 1io7_A 2 YDWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNN-FSKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTS-DPP 74 (368)
T ss_dssp HHHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHC-TTTEECCCSSHHHHHHHHTTTCCCCSCGGGSSGGGC-CTT
T ss_pred CHHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcC-cccccccccccccccccccccccccccccccccccC-CCh
Confidence 4566777 589999987 4 58899999999999975 446887764 1 1111 1 11101 345444 599
Q ss_pred chHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHH-HHHHHHHHHHHHhcCCCC
Q 044206 138 YWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWF-TDTIRNVVLRMIVGKGCD 214 (245)
Q Consensus 138 ~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~~~~~~vi~~~~fG~~~~ 214 (245)
.|+++||++++. |++.+++.+.+.+.++++++++.+ + . + ++|+.+.+ ..+++|+++.+ ||.+.+
T Consensus 75 ~h~~~R~~~~~~-f~~~~~~~~~~~i~~~~~~l~~~l-~------~---g-~~d~~~~~~~~~~~~vi~~~-~G~~~~ 139 (368)
T 1io7_A 75 LHDELRSMSADI-FSPQKLQTLETFIRETTRSLLDSI-D------P---R-EDDIVKKLAVPLPIIVISKI-LGLPIE 139 (368)
T ss_dssp HHHHHHGGGTTT-TCHHHHHHHHHHHHHHHHHHHHTC-C------T---T-SEEHHHHTTTHHHHHHHHHH-HTCCGG
T ss_pred HHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHh-h------c---C-CccHHHHHHHHHHHHHHHHH-hCCCHH
Confidence 999999999985 899999999999988888877776 2 1 2 58998866 78999999999 998764
No 73
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=99.34 E-value=5.1e-12 Score=101.76 Aligned_cols=141 Identities=10% Similarity=0.094 Sum_probs=101.3
Q ss_pred CChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhHHHhhcCCcceeeccCCcchHHHHH
Q 044206 65 EPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAMEILGYNFSMFGFSPYGSYWREIRK 144 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~ 144 (245)
.+++..+.+++++ |||+++..| .+++++++.+++++.. ..|+.++.............++ +..+|+.|+++||
T Consensus 20 ~dp~~~~~~lr~~-~pv~~~~~g---~~~v~~~~~v~~~l~d--~~fs~~~~~~~~~~~~~~~~~l-~~~dg~~h~~~R~ 92 (394)
T 2wiy_A 20 NNPYPWYRRLQQD-HPVHKLEDG---TYLVSRYADVSHFAKL--PIMSVEPGWADAGPWAVASDTA-LGSDPPHHTVLRR 92 (394)
T ss_dssp HCCHHHHHHHHHH-CSEEECTTS---CEEECCHHHHHHHTTS--TTEECHHHHHTCGGGGGGGGSG-GGCCTTHHHHHHH
T ss_pred cCccHHHHHHHhc-CCeEEecCC---eEEEcCHHHHHHHHcC--CCccccccccccccchhccccc-ccCCchHHHHHHH
Confidence 4678888888664 899877543 6899999999999943 3454432111000111111234 4556999999999
Q ss_pred HHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHH
Q 044206 145 IATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDTIRNVVLRMIVGKGCDSVDGEEWIEL 224 (245)
Q Consensus 145 ~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~ 224 (245)
++++. |++++++.+.+.+.+.++++++.+ .. +.++|+...+..+++++++..+||.+.+ +.+++.+.
T Consensus 93 ~~~~~-fs~~~~~~~~~~i~~~~~~l~~~~------~~----~~~~d~~~~~~~~~~~vi~~~~~G~~~~--~~~~~~~~ 159 (394)
T 2wiy_A 93 QTNKW-FTPKLVDGWVRTTRELVGDLLDGV------EA----GQVIEARRDLAVVPTHVTMARVLQLPED--DADAVMEA 159 (394)
T ss_dssp HHHTT-CSHHHHHHHTHHHHHHHHHHHHTC------CT----TCCEEHHHHHTHHHHHHHHHHHHTCCCC--CHHHHHHH
T ss_pred HHHhc-cCHHHHHHHHHHHHHHHHHHHHHH------hc----cCCeeHHHHHHhhhHHHHHHHHcCCCHh--HHHHHHHH
Confidence 99985 899999999999998888888777 32 2379999999999999999999998643 34455554
Q ss_pred H
Q 044206 225 L 225 (245)
Q Consensus 225 ~ 225 (245)
+
T Consensus 160 ~ 160 (394)
T 2wiy_A 160 M 160 (394)
T ss_dssp H
T ss_pred H
Confidence 4
No 74
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=99.27 E-value=3.8e-12 Score=103.26 Aligned_cols=141 Identities=13% Similarity=0.049 Sum_probs=97.2
Q ss_pred CChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCCh----------hhHHHhhcCCcceeecc
Q 044206 65 EPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKT----------LAMEILGYNFSMFGFSP 134 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 134 (245)
.+++.+ ++.++|||++++..++.. +++++++.+++++.++. +...... ......+ .++ +..
T Consensus 33 ~~P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~l-~~~ 103 (416)
T 3p3o_A 33 NFSWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDKR--LISGFRGLVDMVGTPEGPVRDFMV---DFL-QSL 103 (416)
T ss_dssp TCCTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCTT--EECSHHHHHHHHTCCSSHHHHHHH---HSG-GGC
T ss_pred cCCchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCcc--cccCCccccccccccccchhhhhc---Ccc-ccC
Confidence 567777 555679999999886656 99999999999996542 3222110 0111111 233 455
Q ss_pred CCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHH-HHHHHHHHHHHHHHhcCCC
Q 044206 135 YGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKR-WFTDTIRNVVLRMIVGKGC 213 (245)
Q Consensus 135 ~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~-~~~~~~~~vi~~~~fG~~~ 213 (245)
+|+.|+++||+++++ |++++++.+.+.+.+.++++++.+ . . + .+|+.. +...+++++++. +||.+.
T Consensus 104 dg~~h~~~Rr~~~~~-fs~~~l~~~~~~i~~~~~~ll~~l------~-~---g-~~d~~~~~~~~~~~~vi~~-l~G~~~ 170 (416)
T 3p3o_A 104 DGADHRRLRGLATHP-FTPRRITAVQPFVRSTVEQLIDKL------P-Q---G-DFDFVQHFPHPLPALVMCQ-LLGFPL 170 (416)
T ss_dssp CHHHHHHHHHTTCGG-GSHHHHHHHHHHHHHHHHHHHHTC------C-S---S-SEEHHHHTTTHHHHHHHHH-HHTCCG
T ss_pred CchHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHhh------c-c---C-CccHHHHHHHHHHHHHHHH-HhCCCH
Confidence 699999999999986 899999999999998888877776 1 1 1 488654 456799999998 588754
Q ss_pred CCCChHHHHHHHHHHh
Q 044206 214 DSVDGEEWIELLTRFS 229 (245)
Q Consensus 214 ~~~~~~~~~~~~~~~~ 229 (245)
+ +.+.+.+....+.
T Consensus 171 ~--~~~~~~~~~~~~~ 184 (416)
T 3p3o_A 171 E--DYDTVGRLSIETN 184 (416)
T ss_dssp G--GHHHHHHHHHTTC
T ss_pred H--HHHHHHHHHHHHH
Confidence 3 3344544444433
No 75
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=99.23 E-value=4.6e-11 Score=96.71 Aligned_cols=147 Identities=11% Similarity=0.002 Sum_probs=99.3
Q ss_pred CCCccccc---ccccCCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhh---HHHh
Q 044206 50 GSWPVIGH---LHLLGGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLA---MEIL 123 (245)
Q Consensus 50 ~~~p~lG~---~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~---~~~~ 123 (245)
.++|.+|- -..+. .+++..+.++++ +|||+++ .+....++++++.+++++.+ ...|+....... ....
T Consensus 18 ~~~P~~~~dp~~~~~~--~dP~~~~~~lR~-~gPV~~~--~~~~~~~vt~~~~v~~vl~d-~~~fs~~~~~~~~~~~~~~ 91 (412)
T 4dnj_A 18 AGVPHLGIDPFALDYF--ADPYPEQETLRE-AGPVVYL--DKWNVYGVARYAEVYAVLND-PLTFCSSRGVGLSDFKKEK 91 (412)
T ss_dssp TTSCEECCCTTSHHHH--HSCHHHHHHHHH-HCSSEEE--TTTTEEEECSHHHHHHHHTC-TTTEESTTCSSSSCTTTSC
T ss_pred CCCCccCCCCCCHHHH--hCcHHHHHHHHh-cCCEEEE--CCCCEEEECCHHHHHHHHcC-CccccCCCccccccccccc
Confidence 36777763 12333 578888888765 6999754 55567899999999999953 344543321111 1101
Q ss_pred hcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchh-HHHHHHHHHH
Q 044206 124 GYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEM-KRWFTDTIRN 202 (245)
Q Consensus 124 ~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~~~~~~ 202 (245)
.....+.+...||+.|+++||+++++ |++++++.+.+.+.+.++++++.+. +.. ..+|+ .++...++++
T Consensus 92 ~~~~~~~~~~~Dg~~H~r~R~~~~~~-Fs~~~l~~~~~~i~~~~~~l~~~~~------~~~---~~~D~v~~~~~~~~~~ 161 (412)
T 4dnj_A 92 PWRPPSLILEADPPAHTRTRAVLSKV-LSPATMKRLRDGFAAAADAKIDELL------ARG---GNIDAIADLAEAYPLS 161 (412)
T ss_dssp CSSCCCTTTTCCTTHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHHHH------HTT---SEEETCCCCCCHHHHH
T ss_pred cccCCCccccCChHHHHHHHhhcccc-cCHHHHHHhhHHHHHHHHHHHHhhh------ccC---CCceeHHHHHhhhhHh
Confidence 11112334455699999999999986 9999999999999999999998883 222 24553 5566778888
Q ss_pred HHHHHHhcCC
Q 044206 203 VVLRMIVGKG 212 (245)
Q Consensus 203 vi~~~~fG~~ 212 (245)
+++.+.....
T Consensus 162 ~i~~l~g~~~ 171 (412)
T 4dnj_A 162 VFPDAMGLKQ 171 (412)
T ss_dssp HHHHHHTCCS
T ss_pred HHHHHcCCch
Confidence 8887654433
No 76
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=98.78 E-value=6.7e-08 Score=78.27 Aligned_cols=148 Identities=12% Similarity=-0.001 Sum_probs=93.5
Q ss_pred CChhHHHHHHHHHhC-CeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChhhHHHhhcCCcceeeccCCcchHHHH
Q 044206 65 EPSHWVLGKMADEYG-PIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTLAMEILGYNFSMFGFSPYGSYWREIR 143 (245)
Q Consensus 65 ~~~~~~~~~~~~~yG-~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R 143 (245)
.+++..+.+++++.+ +++-...+| ..-++++.+.+++++. ....|+.+....... .+..........||+.|+++|
T Consensus 37 ~~~~~~~~~lr~~~~~~~~~~~~~g-g~W~vtr~~dv~~vl~-d~~~fs~~~~~~~~~-~~~~~~~~~~~~D~p~H~r~R 113 (417)
T 4dxy_A 37 DGYHEAWKKVQHPGIPDLIWTPFTG-GHWIATNGDTVKEVYS-DPTRFSSEVIFLPKE-AGEKAQMVPTKMDPPEHTPYR 113 (417)
T ss_dssp GCHHHHHHHHSCTTCCSEEEESSTT-SEEEECSHHHHHHHHT-CTTTEESSCCSSSTT-SSCSSCTTTTTCCTTTHHHHH
T ss_pred cChHHHHHHHHhhCCCCEEecCCCC-CEEEECCHHHHHHHHc-CchhccCCCcccccc-cccccccCcccCCcHHHHHHH
Confidence 467777777766543 343332333 3456799999999994 344576543221111 111112233445699999999
Q ss_pred HHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHH-HHHHHHHHHHHHHhcCCCCCCChHHHH
Q 044206 144 KIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRW-FTDTIRNVVLRMIVGKGCDSVDGEEWI 222 (245)
Q Consensus 144 ~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~-~~~~~~~vi~~~~fG~~~~~~~~~~~~ 222 (245)
|+++++ |++++++.+.+.+.+.++++++.+ .+.+ .+|+... ...+++.+++. ++|... ++.+.+.
T Consensus 114 rll~~~-Fs~~~l~~~~~~i~~~~~~lld~l------~~~g----~~D~v~~~a~~l~~~vi~~-llg~~~--~d~~~~~ 179 (417)
T 4dxy_A 114 KALDKG-LNLAKIRKVEDKVREVASSLIDSF------AARG----ECDFAAEYAELFPVHVFMA-LADLPL--EDIPVLS 179 (417)
T ss_dssp HHHHHH-HCHHHHHTTHHHHHHHHHHHHHHH------HTTS----EEEHHHHTTTTHHHHHHHH-HTTCCG--GGHHHHH
T ss_pred HHhhhh-cCHHHHHHHHHHHHHHHHHHHHHh------hhcC----CeeeHHHHHhhhHHHHHHH-HcCCCH--HHHHHHH
Confidence 999986 999999999999999999999998 3332 5775444 45666777665 466543 2334455
Q ss_pred HHHHHHh
Q 044206 223 ELLTRFS 229 (245)
Q Consensus 223 ~~~~~~~ 229 (245)
+....+.
T Consensus 180 ~~~~~~~ 186 (417)
T 4dxy_A 180 EYARQMT 186 (417)
T ss_dssp HHHHHHH
T ss_pred hhhhhhc
Confidence 5444443
No 77
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=98.00 E-value=2.4e-08 Score=79.65 Aligned_cols=126 Identities=11% Similarity=0.087 Sum_probs=78.4
Q ss_pred CCccccccccc---CCCCChhHHHHHHHHHhCCeeEEEeCCeeEEEEcCHHHHHHHHhhCCccccCCCChh--h------
Q 044206 51 SWPVIGHLHLL---GGPEPSHWVLGKMADEYGPIFKIKMGINRALVVSNWEMAKECLTTHDKVFASRPKTL--A------ 119 (245)
Q Consensus 51 ~~p~lG~~~~~---~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~~~~p~~~~~il~~~~~~~~~~~~~~--~------ 119 (245)
++|++|+...+ ....+++..+.+++++ ||++.. .+.+++++++.+++++.+ ..|++++... .
T Consensus 42 ~~P~~G~~~~~~~~~~~~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d--~~f~~~~~~~~~~~~~~~~ 114 (381)
T 2yjn_B 42 GYGSNGDPYPMLLCGHDDDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDD--PAFTRATGRTPEWMRAAGA 114 (381)
T ss_dssp HHHHHTCHHHHHHHTCCSCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHC--SSEESSCCCCCHHHHHHTC
T ss_pred cccccCCchhhcCchhccCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcC--CCcCCCccccccccccccc
Confidence 67999976432 1115789999988865 998754 458999999999999965 3576553211 1
Q ss_pred -HHHhhcCCcceeeccCCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHH-H
Q 044206 120 -MEILGYNFSMFGFSPYGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWF-T 197 (245)
Q Consensus 120 -~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~-~ 197 (245)
....+ .+++.. +|+.| .++ |+ . .+.+.+.++++++.+ . . .+|+...+ .
T Consensus 115 ~~~~~~---~~l~~~-dg~~H-------~~~-Ft-----~-~~~i~~~~~~ll~~~------~--g----~~Dl~~~~a~ 164 (381)
T 2yjn_B 115 PPAEWA---QPFRDV-HAASW-------EGE-VP-----D-VGELAESFAGLLPGA------G--A----RLDLVGDFAW 164 (381)
T ss_dssp CHHHHT---HHHHHH-HHCCC-------CSC-CC-----C-CSCHHHHTSTTSCC------------------CCCCCCT
T ss_pred ccchhh---hhhhhC-Cchhh-------hhc-cC-----C-hHHHHHHHHHHHHhc------c--C----cchHHHHHHH
Confidence 11111 244444 48999 455 77 3 667888888777777 3 1 67887554 7
Q ss_pred HHHHHHHHHHHhcCCCC
Q 044206 198 DTIRNVVLRMIVGKGCD 214 (245)
Q Consensus 198 ~~~~~vi~~~~fG~~~~ 214 (245)
.+++++|+++ ||.+.+
T Consensus 165 ~l~~~vi~~l-~G~~~~ 180 (381)
T 2yjn_B 165 QVPVQGMTAV-LGAAGV 180 (381)
T ss_dssp HHHHHHHHTC------C
T ss_pred HHHHHHHHHH-cCCCHH
Confidence 9999999995 998764
No 78
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.29 E-value=2 Score=26.54 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=44.6
Q ss_pred cccccccccCCCCChhHHHHHHHHHhC-CeeEEEeCCeeEEEEcCHHHHHHHHhh-CCccccCCCC
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYG-PIFKIKMGINRALVVSNWEMAKECLTT-HDKVFASRPK 116 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG-~v~~~~~~~~~~v~~~~p~~~~~il~~-~~~~~~~~~~ 116 (245)
-+++|+..-.........+.++..+|| +|..+ .+|.-.|...+.+.++..+.+ ++..+-+|+.
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 448898865421223445778999995 98877 568889999999999988854 5555545543
No 79
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=73.75 E-value=15 Score=23.77 Aligned_cols=63 Identities=17% Similarity=0.143 Sum_probs=39.5
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC------CeeEEEEcCHHHHHHHHhh-CCccccCC
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG------INRALVVSNWEMAKECLTT-HDKVFASR 114 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~------~~~~v~~~~p~~~~~il~~-~~~~~~~~ 114 (245)
--++|++..-....+....+.++..+||+|..+.+. |.-.|-..+++.+...+.. ++..+.++
T Consensus 31 ~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 31 VVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 346788865331112233466788999999887763 2346778899988888754 44444444
No 80
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.51 E-value=14 Score=22.75 Aligned_cols=57 Identities=16% Similarity=0.122 Sum_probs=38.4
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC--------CeeEEEEcCHHHHHHHHhhCCcccc
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG--------INRALVVSNWEMAKECLTTHDKVFA 112 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~--------~~~~v~~~~p~~~~~il~~~~~~~~ 112 (245)
--++|+++.-. ....+.++..+||+|..+.+. |--.|...+++.++.++..++..+.
T Consensus 13 ~lfV~~Lp~~~----te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~ 77 (103)
T 1s79_A 13 SVYIKGFPTDA----TLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYK 77 (103)
T ss_dssp CEEEECCCTTC----CHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCT
T ss_pred EEEEECCCCCC----CHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEEC
Confidence 34577776533 355577788899999887763 2345778899999999864333343
No 81
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=72.47 E-value=12 Score=21.67 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=38.6
Q ss_pred ccccccccCCCCC----hhHHHHHHHHHhCCeeEEEeC-------CeeEEEEcCHHHHHHHHhh-CCccccC
Q 044206 54 VIGHLHLLGGPEP----SHWVLGKMADEYGPIFKIKMG-------INRALVVSNWEMAKECLTT-HDKVFAS 113 (245)
Q Consensus 54 ~lG~~~~~~~~~~----~~~~~~~~~~~yG~v~~~~~~-------~~~~v~~~~p~~~~~il~~-~~~~~~~ 113 (245)
++|+++.-. .+ ....+.+...+||+|..+.+. |--.|-..+++.++..+.. ++..+.+
T Consensus 5 ~V~nLp~~~--~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 74 (81)
T 2krb_A 5 VVDNVPQVG--PDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 74 (81)
T ss_dssp EEESCCCCC--TTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSS
T ss_pred EEeCCCCCc--HHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCC
Confidence 467776433 22 446778888999999888764 2235678899999988853 3444433
No 82
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=70.46 E-value=12 Score=21.06 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=33.3
Q ss_pred cccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhhCC
Q 044206 55 IGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTTHD 108 (245)
Q Consensus 55 lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~~~ 108 (245)
+|+++.- -....+.++..+||+|..+.+.. --.|-..+++.++.++..++
T Consensus 4 v~nLp~~----~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~ 62 (75)
T 1iqt_A 4 VGGLSPD----TPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 62 (75)
T ss_dssp ESCCCSS----CCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSS
T ss_pred EeCCCCC----CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCC
Confidence 4555432 23455777888899988877631 23566789999999886443
No 83
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=68.22 E-value=12 Score=20.20 Aligned_cols=21 Identities=14% Similarity=-0.075 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhhhhcccccc
Q 044206 24 YTSLLVSRNLLSKYTSKKKRE 44 (245)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~ 44 (245)
++++.++...+++.-+.+++.
T Consensus 23 LllL~li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 23 LLLLTILVLAMWKVGFFKRNR 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHcCcccCCC
Confidence 333334444444444434433
No 84
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=68.16 E-value=18 Score=22.18 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=40.7
Q ss_pred cccccccccCCCCC----hhHHHHHHHHHhCCeeEEEeC-------CeeEEEEcCHHHHHHHHhh-CCccccC
Q 044206 53 PVIGHLHLLGGPEP----SHWVLGKMADEYGPIFKIKMG-------INRALVVSNWEMAKECLTT-HDKVFAS 113 (245)
Q Consensus 53 p~lG~~~~~~~~~~----~~~~~~~~~~~yG~v~~~~~~-------~~~~v~~~~p~~~~~il~~-~~~~~~~ 113 (245)
-++|+++.-. .+ ....+.++..+||+|..+.+. |--.|-..+++.++..+.. ++..+.+
T Consensus 18 l~V~nLp~~~--~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 18 IVVDNVPQVG--PDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp EEEESCCCCC--TTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred EEEeCCCcch--hhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 4688887543 22 457788888999999888774 2335777888888888754 4444443
No 85
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.53 E-value=17 Score=21.83 Aligned_cols=54 Identities=7% Similarity=0.124 Sum_probs=35.3
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeC------CeeEEEEcCHHHHHHHHhh
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG------INRALVVSNWEMAKECLTT 106 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~------~~~~v~~~~p~~~~~il~~ 106 (245)
-++|+++.-....+....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 12 l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~ 71 (96)
T 2dgx_A 12 VQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNS 71 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHH
Confidence 46788775432122333344888899999888774 2235677899988888753
No 86
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=61.62 E-value=18 Score=21.56 Aligned_cols=55 Identities=15% Similarity=0.115 Sum_probs=36.6
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC------CeeEEEEcCHHHHHHHHhh
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG------INRALVVSNWEMAKECLTT 106 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~------~~~~v~~~~p~~~~~il~~ 106 (245)
--++|+++.-....+....+.++..+||+|..+.+. |.-.|-..+++.+...+..
T Consensus 10 ~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~ 70 (97)
T 1nu4_A 10 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 70 (97)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 446788765432122233445888999999888764 3446778899988888753
No 87
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=58.07 E-value=31 Score=21.39 Aligned_cols=54 Identities=20% Similarity=0.174 Sum_probs=37.3
Q ss_pred CCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC------CeeEEEEcCHHHHHHHHh
Q 044206 48 ARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG------INRALVVSNWEMAKECLT 105 (245)
Q Consensus 48 ~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~------~~~~v~~~~p~~~~~il~ 105 (245)
++...-++|+++.-. ....+.++..+||+|..+.+. |.-.|-..+++.+...+.
T Consensus 6 ~~~~~l~V~nlp~~~----t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~ 65 (115)
T 3lqv_A 6 EVNRILYIRNLPYKI----TAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVD 65 (115)
T ss_dssp TCCSEEEEESCCTTC----CHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHH
Confidence 333455788886533 345577888899999888762 234677888888888875
No 88
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=57.95 E-value=23 Score=19.85 Aligned_cols=54 Identities=7% Similarity=0.086 Sum_probs=34.4
Q ss_pred cccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhhCCcccc
Q 044206 55 IGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTTHDKVFA 112 (245)
Q Consensus 55 lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~~~~~~~ 112 (245)
+|+++.- -..+.+.++..+||+|..+.+.. --.|-..+++.++.++.-++..+.
T Consensus 4 v~nlp~~----~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~ 66 (75)
T 2mss_A 4 VGGLSVN----TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEIN 66 (75)
T ss_dssp EECCCSS----CCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSS
T ss_pred EecCCCC----CCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEEC
Confidence 4555532 23455777888899988877632 234667899999888753333333
No 89
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=53.53 E-value=31 Score=20.00 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=35.8
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC-----C----eeEEEEcCHHHHHHHHhhCC
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG-----I----NRALVVSNWEMAKECLTTHD 108 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-----~----~~~v~~~~p~~~~~il~~~~ 108 (245)
--++|+++.-. ....+.++..+||+|..+.+. + --.|-..+++.++.++...+
T Consensus 13 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~ 74 (87)
T 3s7r_A 13 KMFVGGLSWDT----SKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE 74 (87)
T ss_dssp EEEEECCCTTC----CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSC
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCC
Confidence 34678876533 455677888899998877652 1 12466789999988885433
No 90
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=50.31 E-value=29 Score=18.72 Aligned_cols=16 Identities=25% Similarity=0.040 Sum_probs=6.4
Q ss_pred HHHHHHHHhhhhcccc
Q 044206 27 LLVSRNLLSKYTSKKK 42 (245)
Q Consensus 27 ~~~~~~~~~~~~~~~~ 42 (245)
+.++...+++..+.++
T Consensus 23 L~Lii~~LwK~GFFKR 38 (54)
T 2l8s_A 23 LMLLILALWKIGFFKR 38 (54)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCcccC
Confidence 3334444444443333
No 91
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=48.92 E-value=40 Score=20.04 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=39.7
Q ss_pred Ccccccccc-cCCCCChhHHHHHHHHHhCCeeEEEe-CCeeEEEEcCHHHHHHHHhh-CCccccC
Q 044206 52 WPVIGHLHL-LGGPEPSHWVLGKMADEYGPIFKIKM-GINRALVVSNWEMAKECLTT-HDKVFAS 113 (245)
Q Consensus 52 ~p~lG~~~~-~~~~~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~~~~p~~~~~il~~-~~~~~~~ 113 (245)
--++|+++. -. ....+.++..+||+|..+.+ -|--.|-..+++.++.++.. ++..+..
T Consensus 12 ~l~V~nlp~~~~----t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (96)
T 2kvi_A 12 RLFIGNLPLKNV----SKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFG 72 (96)
T ss_dssp EEEEESSTTSCC----CHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred EEEEeCCCcccC----CHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 346788874 33 34557788889999888776 34456778899999998864 4444433
No 92
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=48.02 E-value=40 Score=20.36 Aligned_cols=55 Identities=11% Similarity=-0.011 Sum_probs=36.4
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeC-----Ce----eEEEEcCHHHHHHHHhh-CCccc
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG-----IN----RALVVSNWEMAKECLTT-HDKVF 111 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-----~~----~~v~~~~p~~~~~il~~-~~~~~ 111 (245)
-++|+++.-. ..+.+.++..+||+|..+.+. ++ -.|-..+++.++..+.. ++..+
T Consensus 22 lfV~nLp~~~----te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~ 86 (99)
T 4fxv_A 22 LIVNYLPQNM----TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL 86 (99)
T ss_dssp EEEESCCTTC----CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE
Confidence 4677776533 345677888899998877652 11 24667899998888754 44334
No 93
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=47.95 E-value=41 Score=19.82 Aligned_cols=49 Identities=12% Similarity=0.063 Sum_probs=35.4
Q ss_pred CCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC----CeeEEEEcCHHHHHHH
Q 044206 51 SWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG----INRALVVSNWEMAKEC 103 (245)
Q Consensus 51 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~----~~~~v~~~~p~~~~~i 103 (245)
..-++|+++.-. ..+.+.+...+||+|..+.+. |--.|-..+++.++++
T Consensus 12 ~~l~V~~Lp~~~----te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 12 SKVFVGRCTEDM----TAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp CEEEEESCCTTC----CHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCCCC----CHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 355678887643 455677888899999888874 3446778889888854
No 94
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=46.07 E-value=50 Score=20.31 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCeeEEEeC-----------CeeEEEEcCHHHHHHHHhh-CCccccCCC
Q 044206 69 WVLGKMADEYGPIFKIKMG-----------INRALVVSNWEMAKECLTT-HDKVFASRP 115 (245)
Q Consensus 69 ~~~~~~~~~yG~v~~~~~~-----------~~~~v~~~~p~~~~~il~~-~~~~~~~~~ 115 (245)
.-+.+...+||+|..+.+. |.-.|-..+++.++..... ++..|.+|.
T Consensus 30 ~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~ 88 (105)
T 3v4m_A 30 EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRV 88 (105)
T ss_dssp HHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred HHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 4566667889999988873 2235667899888887744 566666553
No 95
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=45.84 E-value=52 Score=20.45 Aligned_cols=58 Identities=17% Similarity=0.066 Sum_probs=39.3
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeC--CeeEEEEcCHHHHHHHHhh-CCccccCC
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG--INRALVVSNWEMAKECLTT-HDKVFASR 114 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~--~~~~v~~~~p~~~~~il~~-~~~~~~~~ 114 (245)
-++|+++.-. ..+.+.++..+||+|..+.+. +--.|-..+++.++..+.. ++..+..+
T Consensus 19 l~V~nLp~~~----t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr 79 (115)
T 3beg_B 19 VVVSGLPPSG----SWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSH 79 (115)
T ss_dssp EEEEECCSSC----CTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 4578887543 234456777899999888764 4456778899999888853 44445443
No 96
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=45.71 E-value=32 Score=21.73 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCeeEEEeC-----CeeEEEEcCHHHHHHHHhh-CCccccCCC
Q 044206 70 VLGKMADEYGPIFKIKMG-----INRALVVSNWEMAKECLTT-HDKVFASRP 115 (245)
Q Consensus 70 ~~~~~~~~yG~v~~~~~~-----~~~~v~~~~p~~~~~il~~-~~~~~~~~~ 115 (245)
-+.+...+||.|..+.+. |.-.|-..+++.++..... ++..|.+|.
T Consensus 33 dl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 33 DVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp HHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred HHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 445556789999888763 3335667788888777644 566666553
No 97
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=45.32 E-value=52 Score=20.31 Aligned_cols=58 Identities=9% Similarity=0.016 Sum_probs=39.0
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeC---CeeEEEEcCHHHHHHHHhh-CCccccCC
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG---INRALVVSNWEMAKECLTT-HDKVFASR 114 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---~~~~v~~~~p~~~~~il~~-~~~~~~~~ 114 (245)
-++|+++.- -....+.++..+||+|..+.+. +.-.|-..+++.++..+.. ++..+.++
T Consensus 13 l~V~nLp~~----~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 74 (111)
T 1whx_A 13 ILAKNLPAG----TLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHV 74 (111)
T ss_dssp EEEESCCTT----CCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred EEEeCCCCC----CCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCe
Confidence 356776542 3456678888899999888763 2345777899988888753 44445444
No 98
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=44.65 E-value=56 Score=20.46 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=35.1
Q ss_pred ccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhhCCccc
Q 044206 54 VIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTTHDKVF 111 (245)
Q Consensus 54 ~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~~~~~~ 111 (245)
++|++..-. ....+.++..+||+|..+.+.. --.|-..+++.++..+.-++..+
T Consensus 40 ~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~ 102 (124)
T 2jwn_A 40 YVGNVDYGS----TAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVF 102 (124)
T ss_dssp EEEEECTTC----CHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEE
T ss_pred EEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeE
Confidence 456665432 3556778888999987776521 22567889999998883344334
No 99
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.84 E-value=50 Score=19.66 Aligned_cols=58 Identities=9% Similarity=0.047 Sum_probs=38.9
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhhCCccccC
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTTHDKVFAS 113 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~~~~~~~~ 113 (245)
--++|+++.-. ....+.++..+||+|..+.+.. --.|-..+++.++.++.-++..+..
T Consensus 12 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g 78 (99)
T 2dgs_A 12 KIFVGGIPHNC----GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG 78 (99)
T ss_dssp EEEEESCCSSC----CHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSS
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECC
Confidence 34577776533 3455778888999998887632 2357788999999988644444443
No 100
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=43.35 E-value=56 Score=20.09 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=39.2
Q ss_pred CCcccccccccC-CCCChhHHHHHHHHHhCCeeEEEeC----------CeeEEEEcCHHHHHHHHhh-CCccccCC
Q 044206 51 SWPVIGHLHLLG-GPEPSHWVLGKMADEYGPIFKIKMG----------INRALVVSNWEMAKECLTT-HDKVFASR 114 (245)
Q Consensus 51 ~~p~lG~~~~~~-~~~~~~~~~~~~~~~yG~v~~~~~~----------~~~~v~~~~p~~~~~il~~-~~~~~~~~ 114 (245)
..-++.|+..-. -..+...-+.+...+||+|..+.+. |.-.|-..+++.+...... ++..|.+|
T Consensus 9 ~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 9 KVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 455677765321 0034566777778899998887652 1124667788888777654 56666554
No 101
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=43.12 E-value=53 Score=19.75 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=37.8
Q ss_pred cccccccccCCC--CChhHHHHHHHHHhCCeeEEEeC---------CeeEEEEcCHHHHHHHHhh-CCcccc
Q 044206 53 PVIGHLHLLGGP--EPSHWVLGKMADEYGPIFKIKMG---------INRALVVSNWEMAKECLTT-HDKVFA 112 (245)
Q Consensus 53 p~lG~~~~~~~~--~~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~~~~p~~~~~il~~-~~~~~~ 112 (245)
-++|+++..... .-....+.+...+||+|..+.+. |--.|-..+++.++..+.. ++..+.
T Consensus 9 vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 9 IVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 80 (100)
T ss_dssp EEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred EEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence 356777653210 11344577788899999888764 2235778899999888753 444443
No 102
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.82 E-value=56 Score=19.68 Aligned_cols=57 Identities=11% Similarity=0.086 Sum_probs=37.8
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhhCCcccc
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTTHDKVFA 112 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~~~~~~~ 112 (245)
--++|+++.-. ....+.++..+||+|..+.+.. --.|-..+++.++.++..++..+.
T Consensus 18 ~l~V~nlp~~~----t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~ 83 (105)
T 2dh8_A 18 KLFVGGLDWST----TQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLD 83 (105)
T ss_dssp EECCBSCCTTC----CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEET
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeEC
Confidence 34577776533 3555778888999987776522 224678899999998866443343
No 103
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=41.36 E-value=56 Score=19.52 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=36.6
Q ss_pred ccccccccCCCCChhHHHHHHHHHhCCeeEEEeC----CeeEEEEcCHHHHHHHHhh-CCccccCC
Q 044206 54 VIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG----INRALVVSNWEMAKECLTT-HDKVFASR 114 (245)
Q Consensus 54 ~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~----~~~~v~~~~p~~~~~il~~-~~~~~~~~ 114 (245)
++|+++.- -....+.++..+||+|..+.+. +--.|-..+++.++.++.. ++..+..+
T Consensus 4 ~V~nLp~~----~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 65 (101)
T 2hvz_A 4 YVGNLGTG----AGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGS 65 (101)
T ss_dssp EEECCCSS----CSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSC
T ss_pred EEeCCCCC----CCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCc
Confidence 35666542 2355677888899998877763 3345677899999988753 33334433
No 104
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=40.87 E-value=67 Score=20.31 Aligned_cols=65 Identities=9% Similarity=0.083 Sum_probs=41.9
Q ss_pred CCcccccccccCC-CCChhHHHHHHHHHhCCeeEEEeCC-------------eeEEEEcCHHHHHHHHhh-CCccccCCC
Q 044206 51 SWPVIGHLHLLGG-PEPSHWVLGKMADEYGPIFKIKMGI-------------NRALVVSNWEMAKECLTT-HDKVFASRP 115 (245)
Q Consensus 51 ~~p~lG~~~~~~~-~~~~~~~~~~~~~~yG~v~~~~~~~-------------~~~v~~~~p~~~~~il~~-~~~~~~~~~ 115 (245)
..-++.|+..-.. ..+..+-+.+...+||+|..+.+.. .-.|-..+++.++..... ++..|.+|.
T Consensus 21 ~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~ 100 (118)
T 3ue2_A 21 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 100 (118)
T ss_dssp CEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4566777653210 1456777788888999988876532 123557788888877654 666676654
No 105
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=40.73 E-value=64 Score=20.00 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=37.2
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC-------eeEEEEcCHHHHHHHHhh-CCccc
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI-------NRALVVSNWEMAKECLTT-HDKVF 111 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~-------~~~v~~~~p~~~~~il~~-~~~~~ 111 (245)
-++|+++.-. ..+.+.++..+||+|..+.+.. -=.|-..+++.++..+.. ++..+
T Consensus 8 lfV~nLp~~~----te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~ 70 (115)
T 4f25_A 8 IFIKNLDKSI----DNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 70 (115)
T ss_dssp EEEESCCTTC----CHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred EEECCCCCCC----CHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEE
Confidence 4677776533 3556778888999988776531 125778899999988754 34333
No 106
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=40.33 E-value=63 Score=19.81 Aligned_cols=51 Identities=12% Similarity=0.048 Sum_probs=35.8
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhhC
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTTH 107 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~~ 107 (245)
-++|++..-. ....+.++..+||+|..+.+.. --.|-..+++.++.++...
T Consensus 28 lfV~nLp~~~----te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 28 MFIGGLSWQT----TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp EEEESCCTTC----CHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred EEEeCCCCCC----CHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 3577776432 3455778888999998887632 2357788999999988554
No 107
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=39.84 E-value=51 Score=18.66 Aligned_cols=48 Identities=8% Similarity=0.083 Sum_probs=32.1
Q ss_pred cccccccCCCCChhHHHHHHHHHhCCeeEEEeC---------CeeEEEEcCHHHHHHHHhh
Q 044206 55 IGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG---------INRALVVSNWEMAKECLTT 106 (245)
Q Consensus 55 lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~~~~p~~~~~il~~ 106 (245)
+|+++.-. ....+.+...+||+|..+.+. |--.|-..+++.++.++..
T Consensus 6 V~nlp~~~----t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 62 (83)
T 3md1_A 6 VGDLNVNV----DDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 62 (83)
T ss_dssp EECCCTTC----CHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred EeCCCCCC----CHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 55554322 345567778899998877652 1235678899999988853
No 108
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=38.54 E-value=72 Score=19.99 Aligned_cols=58 Identities=12% Similarity=0.146 Sum_probs=39.1
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeC---------CeeEEEEcCHHHHHHHHhh-CCccccCC
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG---------INRALVVSNWEMAKECLTT-HDKVFASR 114 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~~~~p~~~~~il~~-~~~~~~~~ 114 (245)
-++|++..-. ....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+..+
T Consensus 25 l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 25 LFVTGVHEEA----TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp EEEESCCTTC----CHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 4577776432 355677788899999888763 2336778899999998853 44444443
No 109
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.96 E-value=64 Score=19.89 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=34.8
Q ss_pred ccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhhCC
Q 044206 54 VIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTTHD 108 (245)
Q Consensus 54 ~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~~~ 108 (245)
++|+++.-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++..++
T Consensus 31 ~V~nLp~~~----te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~ 90 (116)
T 1x4b_A 31 FIGGLSFET----TEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARP 90 (116)
T ss_dssp EEECCTTCC----CHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCS
T ss_pred EEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCC
Confidence 567776432 3455778888999987776522 23566789999999985533
No 110
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=37.61 E-value=65 Score=19.21 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=35.6
Q ss_pred cccccccc-cCCCCChhHHHHHHHHHhCCeeEEEeC-CeeEEEEcCHHHHHHHHhh
Q 044206 53 PVIGHLHL-LGGPEPSHWVLGKMADEYGPIFKIKMG-INRALVVSNWEMAKECLTT 106 (245)
Q Consensus 53 p~lG~~~~-~~~~~~~~~~~~~~~~~yG~v~~~~~~-~~~~v~~~~p~~~~~il~~ 106 (245)
-++|++.. -. ....+.++..+||+|..+.+. |--.|-..+++.++.++..
T Consensus 25 l~V~nLp~~~~----t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~ 76 (97)
T 2xnq_A 25 LFIGNLPLKNV----SKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEX 76 (97)
T ss_dssp EEEESCCSSCC----CHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCcccC----CHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 36777764 32 345577888899999888773 4445678899999888853
No 111
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=37.52 E-value=67 Score=19.30 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=38.3
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC-CeeEEEEcCHHHHHHHHhh-CCccc
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG-INRALVVSNWEMAKECLTT-HDKVF 111 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-~~~~v~~~~p~~~~~il~~-~~~~~ 111 (245)
--++|+++.-. ....+.++..+||+|..+.+. +.-.|-..+++.++..+.. ++..+
T Consensus 13 ~l~V~nl~~~~----t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~ 70 (103)
T 2dgu_A 13 VLFVRNLANTV----TEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDL 70 (103)
T ss_dssp CEEEECCCTTC----CHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEE
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCcc
Confidence 34677776533 345677888899999888764 3345668899999988854 44333
No 112
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.41 E-value=64 Score=19.09 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=38.1
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCee-EEEeCC---------eeEEEEcCHHHHHHHHhh-CCccccCC
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIF-KIKMGI---------NRALVVSNWEMAKECLTT-HDKVFASR 114 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~-~~~~~~---------~~~v~~~~p~~~~~il~~-~~~~~~~~ 114 (245)
--++|+++.-. ..+.+.++..+||+|. .+.+.. --.|-..+++.++.++.. ++..+..+
T Consensus 11 ~l~V~nLp~~~----t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (99)
T 2div_A 11 SLWMGDLEPYM----DENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 80 (99)
T ss_dssp EEEECSCCTTC----CHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSC
T ss_pred EEEEeCCCCCC----CHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 34678876533 3556778888999987 766521 124667899999988853 44444443
No 113
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=37.21 E-value=65 Score=19.04 Aligned_cols=56 Identities=14% Similarity=0.070 Sum_probs=37.1
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC------------eeEEEEcCHHHHHHHHhh-CCccc
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI------------NRALVVSNWEMAKECLTT-HDKVF 111 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~------------~~~v~~~~p~~~~~il~~-~~~~~ 111 (245)
--++|+++.-. ....+.++..+||+|..+.+.. --.|-..+++.++.++.. ++..+
T Consensus 7 ~l~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 75 (98)
T 2cpf_A 7 GLFIKNLNFST----TEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV 75 (98)
T ss_dssp CEEEESCCTTC----CHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee
Confidence 34577776533 3555777888999987776531 224667899999999864 33333
No 114
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=36.71 E-value=69 Score=19.26 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=36.8
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeC---------CeeEEEEcCHHHHHHHHhh-CCcccc
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG---------INRALVVSNWEMAKECLTT-HDKVFA 112 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~~~~p~~~~~il~~-~~~~~~ 112 (245)
-++|++..-. ....+.++..+||+|..+.+. |--.|-..+++.++.++.. ++..+.
T Consensus 26 l~V~nlp~~~----t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 91 (106)
T 1p27_B 26 LFVTGVHEEA----TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 91 (106)
T ss_dssp EEEECCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS
T ss_pred EEEeCCCCCC----CHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC
Confidence 3567776532 345577888999998887763 1234667899999888853 443343
No 115
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=36.52 E-value=1.1e+02 Score=21.63 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=40.1
Q ss_pred Ccccccccc-cCCCCChhHHHHHHHHHhCCeeEEEeC----CeeEEEEcCHHHHHHHHhh-CCccccCC
Q 044206 52 WPVIGHLHL-LGGPEPSHWVLGKMADEYGPIFKIKMG----INRALVVSNWEMAKECLTT-HDKVFASR 114 (245)
Q Consensus 52 ~p~lG~~~~-~~~~~~~~~~~~~~~~~yG~v~~~~~~----~~~~v~~~~p~~~~~il~~-~~~~~~~~ 114 (245)
--++|+++. -. ....+.++..+||+|..+.+. |.-.|-..+++.++.++.. ++..+.++
T Consensus 36 ~l~V~nLp~~~~----te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 100 (229)
T 2adc_A 36 VLLVSNLNPERV----TPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGK 100 (229)
T ss_dssp EEEEESCCTTTC----CHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSS
T ss_pred EEEEeCCCcccC----CHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 346788765 32 345667788899999888764 3356778899999998852 44444433
No 116
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.39 E-value=61 Score=18.50 Aligned_cols=50 Identities=20% Similarity=0.094 Sum_probs=34.1
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHh
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLT 105 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~ 105 (245)
--++|+++.-. ....+.++..+||+|..+.+.. --.|-..+++.++.++.
T Consensus 7 ~l~v~nlp~~~----t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 7 GLYIRGLQPGT----TDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp EEEEESCCTTC----CHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 44577776433 3455677778899988876522 23567889998888875
No 117
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.70 E-value=76 Score=19.44 Aligned_cols=54 Identities=6% Similarity=-0.064 Sum_probs=35.2
Q ss_pred ccccccccCCCCChhHHHHHHHHHhCCeeEEEeC-----C----eeEEEEcCHHHHHHHHhhCCccc
Q 044206 54 VIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG-----I----NRALVVSNWEMAKECLTTHDKVF 111 (245)
Q Consensus 54 ~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-----~----~~~v~~~~p~~~~~il~~~~~~~ 111 (245)
++|++..-. ....+.++..+||+|..+.+. + --.|-..+++.++.++.-++..+
T Consensus 29 ~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~ 91 (114)
T 2cq4_A 29 FCMQLAARI----RPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRL 91 (114)
T ss_dssp EEESCCTTC----CHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEE
T ss_pred EEeCCCCCC----CHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEe
Confidence 466665432 345577888899999888764 1 23566788888888873344433
No 118
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=35.66 E-value=76 Score=19.42 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=36.8
Q ss_pred ccccccccCCCCChhHHHHHHHHHhCCeeEEEe-CCeeEEEEcCHHHHHHHHhh-CCccc
Q 044206 54 VIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKM-GINRALVVSNWEMAKECLTT-HDKVF 111 (245)
Q Consensus 54 ~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~~~~p~~~~~il~~-~~~~~ 111 (245)
++|++..-. ....+.++..+||+|..+.+ -|--.|-..+++.++.++.. ++..+
T Consensus 35 ~V~nLp~~~----t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~ 90 (108)
T 2jvo_A 35 FVRPFPLDV----QESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSF 90 (108)
T ss_dssp EECSSCTTC----CHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred EEECCCCCC----CHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 567765432 35567788889999877766 45556778899988888753 44334
No 119
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.59 E-value=63 Score=19.78 Aligned_cols=49 Identities=12% Similarity=0.069 Sum_probs=33.1
Q ss_pred ccccccccCCCCChhHHHHHHHHHhCCeeEEEeC-------CeeEEEEcCHHHHHHHHhh
Q 044206 54 VIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG-------INRALVVSNWEMAKECLTT 106 (245)
Q Consensus 54 ~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-------~~~~v~~~~p~~~~~il~~ 106 (245)
++|++..-. ..+.+.++..+||+|..+.+. |--.|-..+++.++.++..
T Consensus 33 ~V~nLp~~~----te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~ 88 (109)
T 2err_A 33 HVSNIPFRF----RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 88 (109)
T ss_dssp EEESCCTTC----CHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHH
T ss_pred EEECCCCcC----CHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHH
Confidence 567765432 455677888899998777663 2335667788888887753
No 120
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.21 E-value=76 Score=19.30 Aligned_cols=54 Identities=17% Similarity=0.001 Sum_probs=37.8
Q ss_pred CCCCCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC---CeeEEEEcCHHHHHHHHh
Q 044206 48 ARGSWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG---INRALVVSNWEMAKECLT 105 (245)
Q Consensus 48 ~~~~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---~~~~v~~~~p~~~~~il~ 105 (245)
+|...-++|+++.- -....+.++..+||.|..+.+. |.-.|-..+.+.++..+.
T Consensus 13 ~p~~~l~V~nLp~~----~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 13 APSRVLHIRKLPGE----VTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVN 69 (101)
T ss_dssp SCCSEEEEESCCTT----CCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCC----CCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 34345678888753 2455677888899999887763 344677889988888874
No 121
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=34.23 E-value=74 Score=22.12 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=34.7
Q ss_pred ccccccccCCCCChhHHHHHHHHHhCCeeEEEeC--------CeeEEEEcCHHHHHHHHhhC
Q 044206 54 VIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG--------INRALVVSNWEMAKECLTTH 107 (245)
Q Consensus 54 ~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~--------~~~~v~~~~p~~~~~il~~~ 107 (245)
++|+++. .-....+.++..+||+|..+.+. |--.|-..+++.++.++...
T Consensus 113 ~V~nLp~----~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~ 170 (193)
T 2voo_A 113 YIKGFPT----DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP 170 (193)
T ss_dssp EEECCCT----TCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT
T ss_pred EecCCCC----cCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC
Confidence 4566653 23456788888999998877653 22356788999999988543
No 122
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=34.10 E-value=77 Score=19.00 Aligned_cols=51 Identities=14% Similarity=0.049 Sum_probs=35.4
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC--------eeEEEEcCHHHHHHHHhh
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI--------NRALVVSNWEMAKECLTT 106 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~--------~~~v~~~~p~~~~~il~~ 106 (245)
--++|+++.-. ....+.++..+||+|..+.+.. --.|-..+++.++.++..
T Consensus 17 ~l~v~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 17 KLFVGMLNKQQ----SEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp EEEEESCCTTC----CHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 34678876533 3455778888999988877632 235667899999888753
No 123
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.07 E-value=76 Score=18.96 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=37.5
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC-------CeeEEEEcCHHHHHHHHhh-CCccc
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG-------INRALVVSNWEMAKECLTT-HDKVF 111 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-------~~~~v~~~~p~~~~~il~~-~~~~~ 111 (245)
--++|+++.-. ....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+
T Consensus 17 ~l~V~nlp~~~----t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 80 (103)
T 2cq3_A 17 RLHVSNIPFRF----RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVV 80 (103)
T ss_dssp EEEEESCCTTC----CHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34577776533 345577888899999887763 2345678899999988853 33333
No 124
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.98 E-value=79 Score=19.12 Aligned_cols=46 Identities=13% Similarity=0.035 Sum_probs=32.3
Q ss_pred ChhHHHHHHHHHhCCeeEEEe-CCeeEEEEcCHHHHHHHHhhCCccc
Q 044206 66 PSHWVLGKMADEYGPIFKIKM-GINRALVVSNWEMAKECLTTHDKVF 111 (245)
Q Consensus 66 ~~~~~~~~~~~~yG~v~~~~~-~~~~~v~~~~p~~~~~il~~~~~~~ 111 (245)
+....+.+....||.|..+++ .++-.|-..|.+.+..+..-++...
T Consensus 27 ~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~mnG~~v 73 (91)
T 2dnr_A 27 ALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKEL 73 (91)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGGGTTCEE
T ss_pred HHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHhcCCeEe
Confidence 344556677778999998886 4556777889998888875444433
No 125
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=33.90 E-value=86 Score=19.51 Aligned_cols=57 Identities=19% Similarity=0.037 Sum_probs=38.8
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhC-CeeEEEeC-----CeeEEEEcCHHHHHHHHhh-CCcccc
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYG-PIFKIKMG-----INRALVVSNWEMAKECLTT-HDKVFA 112 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG-~v~~~~~~-----~~~~v~~~~p~~~~~il~~-~~~~~~ 112 (245)
--++|+++.-. ..+.+.++..+|| +|..+.+. |.-.|-..+++.++..+.. ++..+.
T Consensus 30 ~l~VgnLp~~~----te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~ 93 (111)
T 2jvr_A 30 RITMKNLPEGC----SWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR 93 (111)
T ss_dssp EEEEECSSCCC----CHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET
T ss_pred EEEEECCCCCC----CHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34678887533 4566788888999 78777663 3346778899999888754 444443
No 126
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.58 E-value=65 Score=19.20 Aligned_cols=51 Identities=18% Similarity=0.060 Sum_probs=35.2
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhh
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTT 106 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~ 106 (245)
--++|+++.-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 14 ~l~V~nLp~~~----t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 14 VLYVGGLAEEV----DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 73 (102)
T ss_dssp CEEEESCCSSC----CHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 44678886543 3556778888999988777622 234667789988888753
No 127
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=33.57 E-value=80 Score=19.01 Aligned_cols=55 Identities=11% Similarity=0.081 Sum_probs=36.1
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeC--------CeeEEEEcCHHHHHHHHhh-CCccc
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG--------INRALVVSNWEMAKECLTT-HDKVF 111 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~--------~~~~v~~~~p~~~~~il~~-~~~~~ 111 (245)
-++|+++.-. ....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+
T Consensus 32 l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 95 (107)
T 3ulh_A 32 LLVSNLDFGV----SDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPL 95 (107)
T ss_dssp EEEESCCTTC----CHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4577776433 345577888899998777653 1235667899999888754 44333
No 128
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.50 E-value=49 Score=20.38 Aligned_cols=58 Identities=12% Similarity=0.041 Sum_probs=37.1
Q ss_pred CcccccccccCCCCChhHHHH---HHHHHhCCeeEEEeCC------------eeEEEEcCHHHHHHHHhh-CCccccC
Q 044206 52 WPVIGHLHLLGGPEPSHWVLG---KMADEYGPIFKIKMGI------------NRALVVSNWEMAKECLTT-HDKVFAS 113 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~---~~~~~yG~v~~~~~~~------------~~~v~~~~p~~~~~il~~-~~~~~~~ 113 (245)
--++|+++.-. ..+.+. ++..+||+|..+.+.. --.|-..+++.++..+.. ++..+..
T Consensus 17 ~l~V~nLp~~~----~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 17 LVFVVGLSQRL----ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CEEEEEECTTT----CCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred EEEEECCCCCC----CHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34678877543 223344 7778899988776531 234667899999888865 5444443
No 129
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.39 E-value=82 Score=19.13 Aligned_cols=50 Identities=16% Similarity=0.009 Sum_probs=36.7
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeC--CeeEEEEcCHHHHHHHHhh
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG--INRALVVSNWEMAKECLTT 106 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~--~~~~v~~~~p~~~~~il~~ 106 (245)
-++|+++.-. ..+.+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 18 l~V~nLp~~~----t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 18 VVVSGLPPSG----SWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp EEEESCCSSC----CHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHH
Confidence 3577776432 456677888899998887763 4556778899999888864
No 130
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.32 E-value=64 Score=17.87 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=30.7
Q ss_pred ccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhhC
Q 044206 54 VIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTTH 107 (245)
Q Consensus 54 ~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~~ 107 (245)
++|+++.-. ..+.+.+...+||+|..+.+.. --.|-..+++.++..+...
T Consensus 4 ~v~nlp~~~----t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~ 62 (77)
T 1uaw_A 4 FIGGLSWQT----TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 62 (77)
T ss_dssp EEESCCSSC----CSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTT
T ss_pred EEeCCCCCC----CHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhC
Confidence 356665432 3344677778899877665422 2245567888888887543
No 131
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.90 E-value=81 Score=18.89 Aligned_cols=58 Identities=16% Similarity=0.042 Sum_probs=39.4
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhh-CCccccCC
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTT-HDKVFASR 114 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~-~~~~~~~~ 114 (245)
-++|+++.-. ....+.++..+||+|..+.+.. --.|-..+++.++.++.. ++..+..+
T Consensus 18 l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 18 VYVGGLDEKV----SEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp EEEECCCTTC----CHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 4577776533 3555778888999998887633 235778899999999864 44444433
No 132
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=32.77 E-value=1e+02 Score=20.15 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=38.1
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCe---------eEEEEcCHHHHHHHHhh-CCccccC
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGIN---------RALVVSNWEMAKECLTT-HDKVFAS 113 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~---------~~v~~~~p~~~~~il~~-~~~~~~~ 113 (245)
-++|+++.-. ....+.++..+||+|..+.+... -.|-..+++.++..+.. ++..+.+
T Consensus 73 l~v~nl~~~~----~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 139 (158)
T 2kn4_A 73 LKVDNLTYRT----SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 139 (158)
T ss_dssp EEEESCCTTC----CHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3567765432 35556777889999988876432 35778899999999864 4444443
No 133
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=31.90 E-value=86 Score=18.87 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=33.8
Q ss_pred CCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC---CeeEEEEcCHHHHHHHH
Q 044206 51 SWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG---INRALVVSNWEMAKECL 104 (245)
Q Consensus 51 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---~~~~v~~~~p~~~~~il 104 (245)
+|-++||+..-. ....+.++..+||+|..+.+. |--.|-..+++.++...
T Consensus 8 ~wL~VgNL~~~~----te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai 60 (89)
T 2wbr_A 8 SWLLLKNLTAQI----DGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQ 60 (89)
T ss_dssp CEEEEECCCTTC----CCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHH
T ss_pred ceEEEeCCCccC----CHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHH
Confidence 456788876533 345678888999999888753 23456677776666555
No 134
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=31.79 E-value=1.1e+02 Score=24.64 Aligned_cols=56 Identities=14% Similarity=0.094 Sum_probs=37.4
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC---------CeeEEEEcCHHHHHHHHhh-CCccc
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG---------INRALVVSNWEMAKECLTT-HDKVF 111 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~~~~p~~~~~il~~-~~~~~ 111 (245)
.-++|++..-. ....+..+..+||+|..+.+. |.-.|.+.+++.+..++.. ++..+
T Consensus 104 ~lfV~nL~~~~----te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i 169 (437)
T 3pgw_S 104 TLFVARVNYDT----TESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI 169 (437)
T ss_pred EEEEeCCCCCC----CHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE
Confidence 34677776433 345577778889999887763 2245778899999888854 44333
No 135
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=31.72 E-value=1.2e+02 Score=20.59 Aligned_cols=54 Identities=15% Similarity=0.165 Sum_probs=36.7
Q ss_pred ccccccccCCCCChhHHHHHHHHHhCCeeEEEeC-----CeeEEEEcCHHHHHHHHhh-CCccc
Q 044206 54 VIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG-----INRALVVSNWEMAKECLTT-HDKVF 111 (245)
Q Consensus 54 ~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-----~~~~v~~~~p~~~~~il~~-~~~~~ 111 (245)
++||+..- -..+.+.+...+||+|-++.+. +.-.|-..|++.+++.... ++..+
T Consensus 50 ~VgNL~~~----vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i 109 (164)
T 1sjr_A 50 IVENLFYP----VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI 109 (164)
T ss_dssp EECSCCSC----CCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCS
T ss_pred EEeCcCCC----CCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 36787542 2455677888999999888763 2346778899888888754 44444
No 136
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.61 E-value=83 Score=18.63 Aligned_cols=58 Identities=10% Similarity=0.049 Sum_probs=37.9
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC---CeeEEEEcCHHHHHHHHhh-CCccccC
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG---INRALVVSNWEMAKECLTT-HDKVFAS 113 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---~~~~v~~~~p~~~~~il~~-~~~~~~~ 113 (245)
--++|+++.-. ..+.+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+..
T Consensus 17 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g 78 (99)
T 2cpj_A 17 RLFVGNLPPDI----TEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRG 78 (99)
T ss_dssp EEEEESCCTTC----CHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTT
T ss_pred EEEEeCCCCCC----CHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34678876533 355577888899998887763 3345667788888888743 3433433
No 137
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=31.60 E-value=1.1e+02 Score=20.01 Aligned_cols=56 Identities=7% Similarity=0.055 Sum_probs=36.4
Q ss_pred ccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhhCCccccC
Q 044206 54 VIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTTHDKVFAS 113 (245)
Q Consensus 54 ~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~~~~~~~~ 113 (245)
++|+++.-. ....+.+...+||+|..+.+.. .-.|-..+++.+..++..++..+.+
T Consensus 91 ~V~nlp~~~----t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g 155 (167)
T 2cjk_A 91 FVGGIGPDV----RPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKD 155 (167)
T ss_dssp EEEEECTTC----CHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSS
T ss_pred EECCCCCCC----CHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCC
Confidence 456665432 3455777888999988877532 2356788999999988644333433
No 138
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=31.49 E-value=80 Score=18.42 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=34.4
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC--------eeEEEEcCHHHHHHHHh
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI--------NRALVVSNWEMAKECLT 105 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~--------~~~v~~~~p~~~~~il~ 105 (245)
-++|+++.-. ..+.+.++..+||+|..+.+.. .-.|-..+++.++.++.
T Consensus 19 l~v~nlp~~~----~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 19 VFVGNLEARV----REEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp EEEECCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHH
T ss_pred EEEECCCCCC----CHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 4577776433 3556778888999988877632 23566789999988875
No 139
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=31.42 E-value=1.2e+02 Score=20.47 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=37.7
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeC-----C----eeEEEEcCHHHHHHHHhhCCccc
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG-----I----NRALVVSNWEMAKECLTTHDKVF 111 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-----~----~~~v~~~~p~~~~~il~~~~~~~ 111 (245)
-++|+++.-. ....+.++..+||+|..+.+. + .-.|-..+++.++..+..++..+
T Consensus 16 l~V~nLp~~~----te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~ 79 (196)
T 1l3k_A 16 LFIGGLSFET----TDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79 (196)
T ss_dssp EEEESCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEE
T ss_pred EEEeCCCCCC----CHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEE
Confidence 4678876533 355677888899998776652 1 23577889999999986544333
No 140
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=31.18 E-value=92 Score=18.99 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=27.8
Q ss_pred HHHH-HHhCCeeEEEeCC--------eeEEEEcCHHHHHHHHhh-CCccccCC
Q 044206 72 GKMA-DEYGPIFKIKMGI--------NRALVVSNWEMAKECLTT-HDKVFASR 114 (245)
Q Consensus 72 ~~~~-~~yG~v~~~~~~~--------~~~v~~~~p~~~~~il~~-~~~~~~~~ 114 (245)
.+.. .+||+|..+.+.. .-.|-..+++.+...... ++..+.+|
T Consensus 44 ~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr 96 (104)
T 1jmt_A 44 FTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ 96 (104)
T ss_dssp HHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred HHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCE
Confidence 3444 8999998888742 224557788888877643 55555444
No 141
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=31.07 E-value=1.4e+02 Score=20.93 Aligned_cols=58 Identities=10% Similarity=-0.019 Sum_probs=39.4
Q ss_pred CCccccccc-ccCCCCChhHHHHHHHHHhCCeeEEEeC----CeeEEEEcCHHHHHHHHhh-CCcccc
Q 044206 51 SWPVIGHLH-LLGGPEPSHWVLGKMADEYGPIFKIKMG----INRALVVSNWEMAKECLTT-HDKVFA 112 (245)
Q Consensus 51 ~~p~lG~~~-~~~~~~~~~~~~~~~~~~yG~v~~~~~~----~~~~v~~~~p~~~~~il~~-~~~~~~ 112 (245)
..-++|++. .-. ..+.+.++..+||+|..+.+. |.-.|-..+++.++..+.. ++..+.
T Consensus 5 ~~l~V~nL~~~~~----~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 68 (205)
T 3tyt_A 5 PVLMVYGLDQSKM----NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMF 68 (205)
T ss_dssp SEEEEECCCTTTC----CHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CEEEEeCCCcccC----CHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 345678887 322 244577888899999988763 3457888899998888753 443333
No 142
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=30.99 E-value=78 Score=18.14 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=34.7
Q ss_pred ccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhhCCcccc
Q 044206 54 VIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTTHDKVFA 112 (245)
Q Consensus 54 ~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~~~~~~~ 112 (245)
++|+++.-. ....+.++..+||+|..+.+.. --.|-..+++.++.++.-++..+.
T Consensus 10 ~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~ 73 (89)
T 3ucg_A 10 YVGNVDYGA----TAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFR 73 (89)
T ss_dssp EEESCCTTC----CHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEET
T ss_pred EEeCCCCCC----CHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEEC
Confidence 456665432 3455777888999988776521 235667889888888733444343
No 143
>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene regulation; 2.00A {Nostoc SP} SCOP: a.186.1.1
Probab=30.95 E-value=92 Score=18.93 Aligned_cols=64 Identities=11% Similarity=-0.002 Sum_probs=33.3
Q ss_pred CCcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHHHHHHHHHHHH
Q 044206 135 YGSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDTIRNVVLRM 207 (245)
Q Consensus 135 ~g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~ 207 (245)
+...-...-++++.++|+.-.+.+....-.+-++++.+++ +- . |..-++....+....|+++..
T Consensus 29 d~~~n~~Id~fVn~aFfadi~v~~ivEIHMeLmDeFskQL------kL-E--Grsee~LlDYRLtLiDv~AHL 92 (102)
T 1r5q_A 29 DKALKEKIDKFINAVFCANIPVPEIIEIHMELIDEFSKQL------RL-E--GRGDETLMDYRLTLIDILAHL 92 (102)
T ss_dssp C--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT------TC------CC--CGGGHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHh------hh-c--ccchHHHHHHHHHHHHHHHHH
Confidence 3455567778888877776666665554445555555554 21 1 112233334556667776644
No 144
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=30.91 E-value=1.1e+02 Score=19.87 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=38.0
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeC----CeeEEEEcCHHHHHHHHhh-CCccccC
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG----INRALVVSNWEMAKECLTT-HDKVFAS 113 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~----~~~~v~~~~p~~~~~il~~-~~~~~~~ 113 (245)
-++|+++.-. ....+.++..+||+|..+.+. |--.|-..+++.++..+.. ++..+.+
T Consensus 76 l~V~nl~~~~----t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 137 (150)
T 2i2y_A 76 VYVGNLGNNG----NKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCG 137 (150)
T ss_dssp EEEESCCSCC----SCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSS
T ss_pred EEEeCCCCCC----CHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4577776533 334467777889999888773 3345778899999888753 4444433
No 145
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.82 E-value=1e+02 Score=19.52 Aligned_cols=51 Identities=12% Similarity=0.017 Sum_probs=36.2
Q ss_pred CCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC---CeeEEEEcCHHHHHHHHh
Q 044206 51 SWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG---INRALVVSNWEMAKECLT 105 (245)
Q Consensus 51 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---~~~~v~~~~p~~~~~il~ 105 (245)
..-++|+++.-. ....+.++..+||.|..+.+. |.=.|-..+.+.+..++.
T Consensus 32 ~~LfVgNLp~~v----te~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 32 RVIHIRKLPIDV----TEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 85 (119)
T ss_dssp SEEEEESCCTTC----CHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHH
T ss_pred CEEEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 445788887533 355677888999998877763 334667778888888774
No 146
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.73 E-value=83 Score=18.35 Aligned_cols=59 Identities=22% Similarity=0.214 Sum_probs=39.2
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhh-CCccccCC
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTT-HDKVFASR 114 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~-~~~~~~~~ 114 (245)
--++|++..-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+..+
T Consensus 7 ~l~v~nlp~~~----t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (95)
T 2dnz_A 7 GLYVGSLHFNI----TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR 75 (95)
T ss_dssp EEEEESCCTTC----CHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 44577776533 3555778888999988877632 235678899999998863 44444443
No 147
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=30.54 E-value=1.2e+02 Score=20.15 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHhC--CeeEEEeC-----C----eeEEEEcCHHHHHHHHhh
Q 044206 67 SHWVLGKMADEYG--PIFKIKMG-----I----NRALVVSNWEMAKECLTT 106 (245)
Q Consensus 67 ~~~~~~~~~~~yG--~v~~~~~~-----~----~~~v~~~~p~~~~~il~~ 106 (245)
....+.++..+|| +|..+.+. | --.|-..+++.++.++..
T Consensus 68 te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ 118 (156)
T 3n9u_C 68 TDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL 118 (156)
T ss_dssp CHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3556778888999 88877652 1 235678899999988865
No 148
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=30.51 E-value=72 Score=19.02 Aligned_cols=48 Identities=10% Similarity=0.082 Sum_probs=32.9
Q ss_pred ccccccccCCCCChhHHHHHHHHHhCCeeEEEeC--------CeeEEEEcCHHHHHHHHh
Q 044206 54 VIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG--------INRALVVSNWEMAKECLT 105 (245)
Q Consensus 54 ~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~--------~~~~v~~~~p~~~~~il~ 105 (245)
++|+++.-. ....+.++..+||+|..+.+. |--.|-..+++.++.++.
T Consensus 13 ~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 13 FVGGIDVRM----DETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEECCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred EEeCCCCCC----CHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 567776432 355577788899998877652 122466778888888875
No 149
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=30.51 E-value=99 Score=19.16 Aligned_cols=58 Identities=19% Similarity=0.142 Sum_probs=38.4
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeC--------CeeEEEEcCHHHHHHHHhh-CCccccCC
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG--------INRALVVSNWEMAKECLTT-HDKVFASR 114 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~--------~~~~v~~~~p~~~~~il~~-~~~~~~~~ 114 (245)
-++|++..-. ....+.++..+||+|..+.+. |--.|-..+++.++.++.. ++..+..+
T Consensus 10 l~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 76 (116)
T 2fy1_A 10 LFIGGLNRET----NEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGK 76 (116)
T ss_dssp EEEECCTTTC----CHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3567776432 355677888899998777663 2335677899999998854 44444443
No 150
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.50 E-value=82 Score=18.23 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=36.1
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEe-CCeeEEEEcCHHHHHHHHhh
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKM-GINRALVVSNWEMAKECLTT 106 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~-~~~~~v~~~~p~~~~~il~~ 106 (245)
--++|+++.-. ....+.++..+||+|..+.+ -+.-.|-..+++.++.++..
T Consensus 10 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~ 61 (90)
T 2dnq_A 10 KLFIGNLPREA----TEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRN 61 (90)
T ss_dssp EEEEESCCSSC----CHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 34577776533 34557788889999888776 34456778899999888743
No 151
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=30.32 E-value=86 Score=18.42 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=34.0
Q ss_pred ccccccccCCCCChhHHHHHHHHHhCCeeEEEeC---------CeeEEEEcCHHHHHHHHhh
Q 044206 54 VIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG---------INRALVVSNWEMAKECLTT 106 (245)
Q Consensus 54 ~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~~~~p~~~~~il~~ 106 (245)
++|++..-. ....+.++..+||+|..+.+. |.-.|-..+++.+..++..
T Consensus 6 ~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 63 (96)
T 2x1f_A 6 YLGSIPYDQ----TEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN 63 (96)
T ss_dssp EEESCCTTC----CHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHH
T ss_pred EEECCCCCC----CHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 466665432 355577888899999888763 2235678899999888743
No 152
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.85 E-value=62 Score=19.37 Aligned_cols=51 Identities=14% Similarity=0.055 Sum_probs=35.1
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhh
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTT 106 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~ 106 (245)
.-++|+++.-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 17 ~l~V~nlp~~~----t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (103)
T 2cq0_A 17 TIRVTNLSEDT----RETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 76 (103)
T ss_dssp EEEEESCCTTC----CHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 34677776533 3455677778999988776632 125678899999998853
No 153
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=29.29 E-value=1.2e+02 Score=19.67 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=36.5
Q ss_pred ccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC-----eeEEEEcCHHHHHHHHhh-CCccc
Q 044206 54 VIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI-----NRALVVSNWEMAKECLTT-HDKVF 111 (245)
Q Consensus 54 ~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~-----~~~v~~~~p~~~~~il~~-~~~~~ 111 (245)
++||+..- -..+.+.++..+||+|-++.+.. +-.|...+++.++..... ++..+
T Consensus 32 ~V~NL~~~----vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i 91 (130)
T 3zzy_A 32 IVENLFYP----VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI 91 (130)
T ss_dssp EEESCCSC----CCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred EECCCCCC----CCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCee
Confidence 47887642 23556778899999988877643 246778888888877643 44444
No 154
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=29.25 E-value=98 Score=18.73 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=35.4
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeC---------CeeEEEEcCHHHHHHHHhh
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG---------INRALVVSNWEMAKECLTT 106 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~~~~p~~~~~il~~ 106 (245)
-++|+++.-. ....+.++..+||+|..+.+. |--.|-..+++.+..++..
T Consensus 29 l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 87 (110)
T 1oo0_B 29 LFVTSIHEEA----QEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 87 (110)
T ss_dssp EEEESCCTTC----CHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3577776532 345577888999999888763 2235678899999888753
No 155
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=28.40 E-value=1.1e+02 Score=18.81 Aligned_cols=51 Identities=16% Similarity=-0.019 Sum_probs=37.1
Q ss_pred CCcccccccccCCCCChhHHHHHHHHHhCCeeEEEe---CCeeEEEEcCHHHHHHHHh
Q 044206 51 SWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKM---GINRALVVSNWEMAKECLT 105 (245)
Q Consensus 51 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~---~~~~~v~~~~p~~~~~il~ 105 (245)
..-++|+++.-. ....+.++..+||+|..+.+ .|.-.|-..+.+.++....
T Consensus 22 ~~l~V~NLp~~~----te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~ 75 (100)
T 3r27_A 22 PVVHIRGLIDGV----VEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVN 75 (100)
T ss_dssp SEEEEESCCTTC----CHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred cEEEEeCCCCCC----CHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 456788887532 34567788889999988776 2455677889988888874
No 156
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=27.95 E-value=89 Score=17.80 Aligned_cols=54 Identities=20% Similarity=0.124 Sum_probs=35.8
Q ss_pred ccccccccCCCCChhHHHHHHHHHhCCeeEEEeC----------CeeEEEEcCHHHHHHHHhh-CCccc
Q 044206 54 VIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG----------INRALVVSNWEMAKECLTT-HDKVF 111 (245)
Q Consensus 54 ~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~----------~~~~v~~~~p~~~~~il~~-~~~~~ 111 (245)
++|+++.-. ....+.++..+||+|..+.+. |.-.|-..+++.++.++.. ++..+
T Consensus 8 ~V~nlp~~~----t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 72 (88)
T 4a8x_A 8 HIGRLTRNV----TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI 72 (88)
T ss_dssp EEECCCTTC----CHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEeCCCCCC----CHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE
Confidence 466665432 345567778899999877652 2235778899999998863 44433
No 157
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=27.93 E-value=93 Score=18.03 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=33.7
Q ss_pred ccccccccCCCCChhHHHHHHHHHhC--CeeEEEeC-----Ce----eEEEEcCHHHHHHHHhh-CCccccCC
Q 044206 54 VIGHLHLLGGPEPSHWVLGKMADEYG--PIFKIKMG-----IN----RALVVSNWEMAKECLTT-HDKVFASR 114 (245)
Q Consensus 54 ~lG~~~~~~~~~~~~~~~~~~~~~yG--~v~~~~~~-----~~----~~v~~~~p~~~~~il~~-~~~~~~~~ 114 (245)
++|++..-. ..+.+.++..+|| +|..+.+. |+ -.|-..+++.++..+.. ++..+.++
T Consensus 5 ~V~nL~~~~----t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr 73 (90)
T 3p5t_L 5 YIGNLTWWT----TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 73 (90)
T ss_dssp EEESCCTTC----CHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC
T ss_pred EEeCCCCCC----CHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE
Confidence 456665432 3455677888999 77666542 11 24557788888888743 44444443
No 158
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.85 E-value=1e+02 Score=18.37 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=33.3
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeC---------CeeEEEEcCHHHHHHHHhh
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG---------INRALVVSNWEMAKECLTT 106 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~~~~p~~~~~il~~ 106 (245)
-++|++..-. ....+.++..+||+|..+.+. |.-.|-..+++.++.++..
T Consensus 11 l~V~nlp~~~----~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 11 VFVGNIPYEA----TEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69 (104)
T ss_dssp EEEESCCTTS----CHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH
T ss_pred EEEeCCCCcC----CHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3567766432 345577788899998777653 1224667899999988853
No 159
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=27.41 E-value=67 Score=16.22 Aligned_cols=13 Identities=15% Similarity=-0.120 Sum_probs=5.3
Q ss_pred HHHHHHHHhhhhc
Q 044206 27 LLVSRNLLSKYTS 39 (245)
Q Consensus 27 ~~~~~~~~~~~~~ 39 (245)
+.++...+++.-+
T Consensus 24 L~li~~~LwK~GF 36 (42)
T 2k1a_A 24 LTILVLAMWKVGF 36 (42)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCc
Confidence 3334444444433
No 160
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=27.22 E-value=1.3e+02 Score=19.49 Aligned_cols=54 Identities=22% Similarity=0.149 Sum_probs=35.5
Q ss_pred ccccccccCCCCChhHHHHHHHHHhCCeeEEEeC--------CeeEEEEcCHHHHHHHHhh-CCccc
Q 044206 54 VIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG--------INRALVVSNWEMAKECLTT-HDKVF 111 (245)
Q Consensus 54 ~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~--------~~~~v~~~~p~~~~~il~~-~~~~~ 111 (245)
++|+++.-. ....+.++..+||+|..+.+. |.-.|-..+++.++..+.. ++..+
T Consensus 4 ~V~nlp~~~----t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 66 (166)
T 3md3_A 4 YVGNLDKAI----TEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQI 66 (166)
T ss_dssp EEEEEETTC----CHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EECCCCCcC----CHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCcc
Confidence 356665322 345677888899999877762 2235678899999988843 44333
No 161
>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural genomics/proteomics initiative, structural genomics; 1.80A {Thermosynechococcus elongatus} SCOP: a.186.1.1 PDB: 1q6a_A 1q6b_A 1suy_A 1sv1_A
Probab=26.94 E-value=1.2e+02 Score=18.84 Aligned_cols=64 Identities=9% Similarity=0.076 Sum_probs=36.3
Q ss_pred CcchHHHHHHHHHhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhccCCCcccchhHHHHHHHHHHHHHHHH
Q 044206 136 GSYWREIRKIATLELLSNHRLGKLRHVREYELKTSLKDLYELWDKNKSTNKMLLVEMKRWFTDTIRNVVLRMI 208 (245)
Q Consensus 136 g~~w~~~R~~~~~~lf~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~vi~~~~ 208 (245)
...-...-++++.++|+.-.+.+....-.+-++++.+++ + -. |..-++....+....|+++..+
T Consensus 37 ~~~nq~Id~FVn~aFfadi~v~~ivEIHMeLmDeFskQL------k-LE--Grsee~LlDYRLtLiDv~AHLc 100 (111)
T 1v2z_A 37 AKVNERIDEFVSKAFFADISVSQVLEIHVELMDTFSKQL------K-LE--GRSEDILLDYRLTLIDVIAHLC 100 (111)
T ss_dssp SCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT------T-CC--GGGGGGGTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHh------h-hc--ccchHHHHHHHHHHHHHHHHHH
Confidence 445556677777776766566554444444444444444 2 12 2234555556777788877543
No 162
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=26.90 E-value=1.4e+02 Score=19.81 Aligned_cols=55 Identities=11% Similarity=0.058 Sum_probs=36.7
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeC---------CeeEEEEcCHHHHHHHHhh-CCccc
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG---------INRALVVSNWEMAKECLTT-HDKVF 111 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~~~~p~~~~~il~~-~~~~~ 111 (245)
-++|+++.-. ....+.++..+||+|..+.+. |--.|-..+++.++.++.. ++..+
T Consensus 75 l~V~nLp~~~----t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 139 (165)
T 1rk8_A 75 LFVTSIHEEA----QEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI 139 (165)
T ss_dssp EEEESCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEeCCCCCC----CHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4577776532 455677888999998877653 2235667899988888753 44333
No 163
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=26.85 E-value=1.3e+02 Score=19.21 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=36.1
Q ss_pred ccccccccCCCCChhHHHHHHHHHhCCeeEEEeC-----C----eeEEEEcCHHHHHHHHhh-CCcccc
Q 044206 54 VIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG-----I----NRALVVSNWEMAKECLTT-HDKVFA 112 (245)
Q Consensus 54 ~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-----~----~~~v~~~~p~~~~~il~~-~~~~~~ 112 (245)
++|++..-. ....+.++..+||+|..+.+. + .-.|-..+++.++.++.. ++..+.
T Consensus 46 ~V~nLp~~~----~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 110 (139)
T 1u6f_A 46 MVNYIPTTV----DEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL 110 (139)
T ss_dssp EEESCSTTC----CHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS
T ss_pred EEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 466665432 345677888899998877652 1 225678899999998864 443343
No 164
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=26.59 E-value=1.3e+02 Score=22.05 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=40.2
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC-------CeeEEEEcCHHHHHHHHhhCCccccCC
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG-------INRALVVSNWEMAKECLTTHDKVFASR 114 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-------~~~~v~~~~p~~~~~il~~~~~~~~~~ 114 (245)
--++|+++.-. ....+.++..+||+|..+.+. |.-.|-..+++.++..+..++..+.++
T Consensus 43 ~l~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~ 108 (292)
T 2ghp_A 43 TVLVKNLPKSY----NQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQN 108 (292)
T ss_dssp EEEEEEECTTC----CHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTE
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCc
Confidence 34678877533 355677888899998877652 234677889999999985454444443
No 165
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=25.98 E-value=93 Score=19.19 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHhCCeeEEEeCC-eeEEEEcCHHHHHHHHh--hCCccccCCC
Q 044206 67 SHWVLGKMADEYGPIFKIKMGI-NRALVVSNWEMAKECLT--THDKVFASRP 115 (245)
Q Consensus 67 ~~~~~~~~~~~yG~v~~~~~~~-~~~v~~~~p~~~~~il~--~~~~~~~~~~ 115 (245)
-..-+.++...||.+.--|+-. .-.+++.+|+.+++++. .+...|.-+.
T Consensus 28 Kt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~k~~~y~i~t 79 (100)
T 1whv_A 28 KTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYRIQT 79 (100)
T ss_dssp CHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHHHHCCSSEEEE
T ss_pred hhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEEE
Confidence 3556778888899766556644 34688999999999996 2244454443
No 166
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.76 E-value=1.1e+02 Score=18.09 Aligned_cols=57 Identities=11% Similarity=0.031 Sum_probs=37.7
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC--------CeeEEEEcCHHHHHHHHhh-CCcccc
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG--------INRALVVSNWEMAKECLTT-HDKVFA 112 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~--------~~~~v~~~~p~~~~~il~~-~~~~~~ 112 (245)
--++|+++.-. ..+.+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.
T Consensus 19 ~l~v~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 84 (100)
T 2do4_A 19 KLFISGLPFSC----TKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK 84 (100)
T ss_dssp CEEEESCCTTC----CHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 44677776533 345577888899998877763 2235678899999988854 443343
No 167
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=25.56 E-value=66 Score=19.91 Aligned_cols=49 Identities=14% Similarity=0.047 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhCCeeEEEeCC-eeEEEEcCHHHHHHHHhh--CCccccCCCC
Q 044206 68 HWVLGKMADEYGPIFKIKMGI-NRALVVSNWEMAKECLTT--HDKVFASRPK 116 (245)
Q Consensus 68 ~~~~~~~~~~yG~v~~~~~~~-~~~v~~~~p~~~~~il~~--~~~~~~~~~~ 116 (245)
..-+.++...||.+.--|+-. .-.+++.+|+.+++++.. ....|.-+.+
T Consensus 19 t~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~~~~~y~i~ty 70 (101)
T 3ctr_A 19 TSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQTY 70 (101)
T ss_dssp HHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHTTCSSCCCCCH
T ss_pred hHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEEEh
Confidence 445677778888666556644 346889999999999963 3444555544
No 168
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=25.28 E-value=1.1e+02 Score=18.03 Aligned_cols=56 Identities=14% Similarity=0.028 Sum_probs=35.0
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeE--------EEeC---------CeeEEEEcCHHHHHHHHhh-CCcccc
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFK--------IKMG---------INRALVVSNWEMAKECLTT-HDKVFA 112 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~--------~~~~---------~~~~v~~~~p~~~~~il~~-~~~~~~ 112 (245)
-++|++..-. ..+.+.++..+||+|.. +.+. |--.|-..+++.++..+.. ++..+.
T Consensus 16 l~V~nLp~~~----t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 16 IFVQGLGENV----TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp EEEECCCSSC----CHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred EEEeCCCCCC----CHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 4577776533 45567788889998765 4431 1224667788888888753 444343
No 169
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=25.13 E-value=1e+02 Score=17.52 Aligned_cols=50 Identities=12% Similarity=0.031 Sum_probs=34.2
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhh
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTT 106 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~ 106 (245)
-++|+++.-. ....+.++..+||+|..+.+.. --.|-..+++.++.++..
T Consensus 9 l~v~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 9 VFVGDLSPEI----TTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp EEEESCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3567776432 3555778888999988776521 224667899999988854
No 170
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=24.88 E-value=1.7e+02 Score=20.08 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=37.4
Q ss_pred ccccccccCCCCChhHHHHHHHHHhCCeeEEEeC---------CeeEEEEcCHHHHHHHHhh-CCcccc
Q 044206 54 VIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG---------INRALVVSNWEMAKECLTT-HDKVFA 112 (245)
Q Consensus 54 ~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~~~~p~~~~~il~~-~~~~~~ 112 (245)
++|+++.-. ..+.+.++..+||+|..+.+. |.-.|-..+++.++.++.. ++..+.
T Consensus 32 ~V~nLp~~~----t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 96 (216)
T 2qfj_A 32 YVGSIYYEL----GEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLG 96 (216)
T ss_dssp EEECCCTTC----CHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC
T ss_pred EEECCCCCC----CHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeC
Confidence 566665432 355677888899999888763 2235778899999999863 443333
No 171
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.48 E-value=80 Score=18.18 Aligned_cols=48 Identities=10% Similarity=0.096 Sum_probs=32.9
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeC----CeeEEEEcCHHHHHHHH
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG----INRALVVSNWEMAKECL 104 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~----~~~~v~~~~p~~~~~il 104 (245)
-++|+++.-. ....+.++..+||+|..+.+. |--.|-..+++.++++.
T Consensus 8 l~V~nLp~~~----te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 8 VFVGRCTGDM----TEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC 59 (88)
T ss_dssp EEEESCCSSS----CHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTT
T ss_pred EEEeCCCCCC----CHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHh
Confidence 3567776433 345677888899999888874 23457778888887643
No 172
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=24.27 E-value=1.1e+02 Score=17.63 Aligned_cols=57 Identities=11% Similarity=0.050 Sum_probs=37.2
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeC-------CeeEEEEcCHHHHHHHHhh-CCccccC
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG-------INRALVVSNWEMAKECLTT-HDKVFAS 113 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-------~~~~v~~~~p~~~~~il~~-~~~~~~~ 113 (245)
-++|+++.-. ....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+..
T Consensus 11 l~V~nlp~~~----t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 75 (92)
T 2dgv_A 11 IFVRNLPFDF----TWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSG 75 (92)
T ss_dssp EEECSCCTTC----CHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4577776432 455677888899998877653 1235667899999888753 4433433
No 173
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.17 E-value=1.2e+02 Score=18.02 Aligned_cols=50 Identities=16% Similarity=0.064 Sum_probs=35.1
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC-------eeEEEEcCHHHHHHHHh
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI-------NRALVVSNWEMAKECLT 105 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~-------~~~v~~~~p~~~~~il~ 105 (245)
--++|+++.-. ....+.++..+||+|..+.+.. --.|-..+++.++.++.
T Consensus 17 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 17 TLYVGNLSRDV----TEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp EEEEESCCTTC----CHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCccC----CHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHH
Confidence 34677776532 4556778888999988776632 23567889999988875
No 174
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=24.16 E-value=1.3e+02 Score=18.36 Aligned_cols=50 Identities=12% Similarity=-0.005 Sum_probs=34.9
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhh
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTT 106 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~ 106 (245)
-++|++..-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 18 l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (115)
T 2dgo_A 18 VFVGDLSPEI----TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 76 (115)
T ss_dssp EEEESCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4577776433 3456778888999988776532 225678899999998854
No 175
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.16 E-value=1.2e+02 Score=17.97 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=38.6
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhh-CCccccCC
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTT-HDKVFASR 114 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~-~~~~~~~~ 114 (245)
--++|+++.-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+..+
T Consensus 14 ~l~v~nLp~~~----t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 1x5s_A 14 KLFVGGLSFDT----NEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR 82 (102)
T ss_dssp EEEEESCCTTC----CHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC
T ss_pred EEEEECCCCCC----CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 34677776433 3555777888999988877643 235667899999888843 44444433
No 176
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.06 E-value=1.3e+02 Score=18.22 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=35.9
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC---CeeEEEEcCHHHHHHHHhh
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG---INRALVVSNWEMAKECLTT 106 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---~~~~v~~~~p~~~~~il~~ 106 (245)
--++|++..-. ....+.++..+||+|..+.+. +--.|-..+++.+..++..
T Consensus 27 ~l~V~nl~~~~----t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 27 TVYCGGIASGL----TDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp EEEEECCSSCC----CHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 34577776532 345577788899999888763 4446778899988888743
No 177
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.65 E-value=1.2e+02 Score=18.04 Aligned_cols=59 Identities=8% Similarity=0.172 Sum_probs=39.7
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCCe----------eEEEEcCHHHHHHHHhh--CCccccCC
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGIN----------RALVVSNWEMAKECLTT--HDKVFASR 114 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~----------~~v~~~~p~~~~~il~~--~~~~~~~~ 114 (245)
--++|+++.-. ....+.++..+||+|..+.+... -.|-..+++.++.++.. ++..+..+
T Consensus 17 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 17 KILVRNIPFQA----NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp CEEEESCCTTC----CHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred EEEEeCCCCcC----CHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 34678876533 35557788889999988877332 35678899999988854 34444433
No 178
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=23.62 E-value=1.6e+02 Score=19.12 Aligned_cols=55 Identities=11% Similarity=-0.011 Sum_probs=36.0
Q ss_pred ccccccccCCCCChhHHHHHHHHHhCCeeEEEeC---------CeeEEEEcCHHHHHHHHhh-CCcccc
Q 044206 54 VIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG---------INRALVVSNWEMAKECLTT-HDKVFA 112 (245)
Q Consensus 54 ~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---------~~~~v~~~~p~~~~~il~~-~~~~~~ 112 (245)
++|+++.-. ..+.+.++..+||+|..+.+. |.-.|-..+++.++..+.. ++..+.
T Consensus 6 ~v~nlp~~~----~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 70 (167)
T 1fxl_A 6 IVNYLPQNM----TQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ 70 (167)
T ss_dssp EEESCCTTC----CHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEcCCCCCC----CHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 456665432 345577888899998877652 1235678899999999853 443333
No 179
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=23.31 E-value=1.5e+02 Score=18.82 Aligned_cols=57 Identities=19% Similarity=0.166 Sum_probs=38.0
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhh-CCcccc
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTT-HDKVFA 112 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~-~~~~~~ 112 (245)
.-++|+++.-. ....+.++..+||+|..+.+.. --.|-..+++.++.++.. ++..+.
T Consensus 48 ~l~V~nLp~~~----te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~ 114 (129)
T 2kxn_B 48 CLGVFGLSLYT----TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 114 (129)
T ss_dssp CBCEETCTTSC----CHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 44677776533 3455778888999998877631 235678899999998853 443343
No 180
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.13 E-value=1.3e+02 Score=17.91 Aligned_cols=57 Identities=11% Similarity=0.081 Sum_probs=38.5
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhh-CCccccC
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTT-HDKVFAS 113 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~-~~~~~~~ 113 (245)
-++|+++.-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+..
T Consensus 16 l~V~nLp~~~----t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2dnm_A 16 LKVDNLTYRT----SPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG 82 (103)
T ss_dssp EEEESCCTTC----CHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4578776533 3555778888999998887632 235778899988888863 4444443
No 181
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.96 E-value=1.2e+02 Score=17.75 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=35.1
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhh
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTT 106 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~ 106 (245)
-++|+++.-. ....+.++..+||+|..+.+.. --.|-..+++.++.++..
T Consensus 11 l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 69 (99)
T 1whw_A 11 LFVRNLSYTS----SEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69 (99)
T ss_dssp EEEECCCTTC----CHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 3567776432 3455778888999998887632 235778899999998843
No 182
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.73 E-value=1.3e+02 Score=18.00 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=38.4
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeE-EEeC--------CeeEEEEcCHHHHHHHHhhCCccccCC
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFK-IKMG--------INRALVVSNWEMAKECLTTHDKVFASR 114 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~-~~~~--------~~~~v~~~~p~~~~~il~~~~~~~~~~ 114 (245)
-++|+++.-. ....+.++..+||.|.. +.+. |--.|-..+++.++..+..++..+..|
T Consensus 18 l~V~nLp~~~----te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr 84 (104)
T 1wg5_A 18 VRLRGLPFGC----SKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHR 84 (104)
T ss_dssp EEEESCCTTC----CHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSS
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCc
Confidence 4677776543 45567788888998754 5442 234677889999999986644444444
No 183
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=22.68 E-value=1.4e+02 Score=18.22 Aligned_cols=51 Identities=20% Similarity=0.023 Sum_probs=34.7
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhh
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTT 106 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~ 106 (245)
--++|+++.-. ..+.+.++..+||+|..+.+.. --.|-..+++.++.++..
T Consensus 27 ~l~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 86 (115)
T 2cpz_A 27 NLFIYHLPQEF----GDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 86 (115)
T ss_dssp CEEEESCCSSC----CHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHH
Confidence 34678876543 3456778888999987766521 124667899999888844
No 184
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.50 E-value=1.4e+02 Score=18.21 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=31.4
Q ss_pred ChhHHHHHHHHHhCCeeEEEe-CCeeEEEEcCHHHHHHHHhhCCccc
Q 044206 66 PSHWVLGKMADEYGPIFKIKM-GINRALVVSNWEMAKECLTTHDKVF 111 (245)
Q Consensus 66 ~~~~~~~~~~~~yG~v~~~~~-~~~~~v~~~~p~~~~~il~~~~~~~ 111 (245)
+....+.+....||.+..+++ ..+-+|-..|.+.+..++.-++...
T Consensus 36 ~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~ldG~~v 82 (95)
T 1ufw_A 36 DLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLDVDGMKV 82 (95)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHHGGGSEE
T ss_pred HHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHhcCCeee
Confidence 344556666777999888876 5566677778888877775444443
No 185
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.44 E-value=1.1e+02 Score=17.19 Aligned_cols=51 Identities=14% Similarity=0.003 Sum_probs=35.9
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC---CeeEEEEcCHHHHHHHHhh
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG---INRALVVSNWEMAKECLTT 106 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---~~~~v~~~~p~~~~~il~~ 106 (245)
--++|+++.-. ..+.+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 14 ~l~V~~l~~~~----t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~ 67 (85)
T 2ytc_A 14 TLYVGGLGDTI----TETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEK 67 (85)
T ss_dssp CEEEECCTTTS----CHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHT
T ss_pred EEEEcCCCCCC----CHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHH
Confidence 34577776532 355677888899998887763 3346678899999988853
No 186
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.43 E-value=1.2e+02 Score=17.51 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=36.1
Q ss_pred CCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHh
Q 044206 51 SWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLT 105 (245)
Q Consensus 51 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~ 105 (245)
..-++|+++.-. ..+.+.++..+||+|..+.+.. .-.|-..+++.++.++.
T Consensus 17 ~~l~V~nlp~~~----t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 76 (94)
T 2e5h_A 17 STVYVSNLPFSL----TNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTR 76 (94)
T ss_dssp TSEEEESCCTTS----CHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCCCC----CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHH
Confidence 345678876432 3555778888999998887632 23577889999988884
No 187
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=22.31 E-value=1.3e+02 Score=17.76 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=33.8
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeC---CeeEEEEcCHHHHHHHHhh
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG---INRALVVSNWEMAKECLTT 106 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---~~~~v~~~~p~~~~~il~~ 106 (245)
-++|++..-. ....+.++..+||+|..+.+. |--.|-..+.+.+..++..
T Consensus 30 l~V~nlp~~~----~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 30 AYIGNIPHFA----TEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp EEEESCCTTC----CHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHH
T ss_pred EEEcCCCccc----CHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHH
Confidence 3567776432 355677888899998887763 3345667788888877743
No 188
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.23 E-value=1.2e+02 Score=17.49 Aligned_cols=51 Identities=22% Similarity=0.176 Sum_probs=35.2
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC-----C----eeEEEEcCHHHHHHHHhh
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG-----I----NRALVVSNWEMAKECLTT 106 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-----~----~~~v~~~~p~~~~~il~~ 106 (245)
.-++|+++.-. ....+.++..+||+|..+.+. + .-.|-..+++.++.++..
T Consensus 17 ~l~v~nlp~~~----t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 17 CLGVFGLSLYT----TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp CEEEESCCSSC----CHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEECCCCCC----CHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 44677776533 345577888899998877662 1 124667899999988854
No 189
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.18 E-value=1.2e+02 Score=17.48 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=37.9
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC-eeEEEEcCHHHHHHHHhh-CCccc
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI-NRALVVSNWEMAKECLTT-HDKVF 111 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~-~~~v~~~~p~~~~~il~~-~~~~~ 111 (245)
--++|+++.-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+
T Consensus 12 ~l~V~nLp~~~----t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~ 69 (92)
T 2dgt_A 12 KLHVGNISPTC----TNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 69 (92)
T ss_dssp EEEEESCCSSC----CHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEE
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCee
Confidence 34678876533 4556778888999998887643 345667889988888753 44334
No 190
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.04 E-value=1.4e+02 Score=18.17 Aligned_cols=50 Identities=14% Similarity=0.120 Sum_probs=35.8
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhh
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTT 106 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~ 106 (245)
-++|+++.-. ..+.+.++..+||+|..+.+.. --.|-..+++.++.++..
T Consensus 20 l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 78 (116)
T 2cqd_A 20 IFVGGLPYHT----TDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 78 (116)
T ss_dssp EEEECCCSSC----CHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTC
T ss_pred EEEeCCCCCC----CHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh
Confidence 4577776533 3455778888999998887643 235678899999999854
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=22.03 E-value=1.7e+02 Score=21.28 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=39.2
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC------CeeEEEEcCHHHHHHHHhh-CCccccC
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG------INRALVVSNWEMAKECLTT-HDKVFAS 113 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~------~~~~v~~~~p~~~~~il~~-~~~~~~~ 113 (245)
--++|++..-....+....+.++..+||+|..+.+. |.-.|-..+++.++..+.. ++..+.+
T Consensus 11 ~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (282)
T 3pgw_A 11 TIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 79 (282)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 456888875432122333466788899998887753 2345778899999988743 3433433
No 192
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=21.95 E-value=1.7e+02 Score=19.06 Aligned_cols=51 Identities=18% Similarity=0.113 Sum_probs=36.1
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC-----C----eeEEEEcCHHHHHHHHhh
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG-----I----NRALVVSNWEMAKECLTT 106 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-----~----~~~v~~~~p~~~~~il~~ 106 (245)
.-++|+++.-. ....+.++..+||+|..+.+. + --.|-..+++.++.++..
T Consensus 41 ~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 100 (156)
T 1h2v_Z 41 TLYVGNLSFYT----TEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 (156)
T ss_dssp EEEEESCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 34677776432 455678888999999888762 1 225678899999998864
No 193
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.66 E-value=1.4e+02 Score=17.75 Aligned_cols=58 Identities=19% Similarity=0.045 Sum_probs=38.4
Q ss_pred CCcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC-------CeeEEEEcCHHHHHHHHhh-CCcccc
Q 044206 51 SWPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG-------INRALVVSNWEMAKECLTT-HDKVFA 112 (245)
Q Consensus 51 ~~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-------~~~~v~~~~p~~~~~il~~-~~~~~~ 112 (245)
.--++|+++.-. ....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.
T Consensus 16 ~~l~V~nlp~~~----t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2d9p_A 16 VNLYVKNLDDGI----DDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 81 (103)
T ss_dssp CCEEEECCCTTC----CHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CEEEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345678876533 345577788899998877664 1235678899999988853 444343
No 194
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=20.47 E-value=2.2e+02 Score=19.73 Aligned_cols=50 Identities=22% Similarity=0.175 Sum_probs=35.4
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEEEeC-----C----eeEEEEcCHHHHHHHHhh
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG-----I----NRALVVSNWEMAKECLTT 106 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~-----~----~~~v~~~~p~~~~~il~~ 106 (245)
-++|+++.-. ..+.+.++..+||+|..+.+. + --.|-..+++.+...+..
T Consensus 18 lfVgnLp~~~----te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 18 LYVGDLHPDV----TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp EEEESCCTTC----CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCC----CHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHH
Confidence 4688887533 355677888899999877652 1 235778899999888754
No 195
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.36 E-value=1.6e+02 Score=18.12 Aligned_cols=50 Identities=12% Similarity=0.018 Sum_probs=36.2
Q ss_pred CcccccccccCCCCChhHHHHHHHHHhCCeeEEEeC---CeeEEEEcCHHHHHHHHh
Q 044206 52 WPVIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMG---INRALVVSNWEMAKECLT 105 (245)
Q Consensus 52 ~p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~---~~~~v~~~~p~~~~~il~ 105 (245)
--++|+++.-. ....+.++..+||+|..+.+. |.=.|-..+++.++....
T Consensus 18 ~LfV~nLp~~v----te~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~ 70 (105)
T 1sjq_A 18 VIHIRKLPIDV----TEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 70 (105)
T ss_dssp EEEECSCCTTS----CHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCCCC----CHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 45678887533 345577888899999888763 344677889998888875
No 196
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.25 E-value=1.4e+02 Score=17.33 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=33.5
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCeeEE-EeCC---------eeEEEEcCHHHHHHHHh
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPIFKI-KMGI---------NRALVVSNWEMAKECLT 105 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~-~~~~---------~~~v~~~~p~~~~~il~ 105 (245)
-++|+++.-. ....+.++..+||+|..+ .+.. --.|-..+++.++.++.
T Consensus 8 l~V~nLp~~~----t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 66 (96)
T 1x5t_A 8 IFIGNLDPEI----DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 66 (96)
T ss_dssp EEEECCCTTC----CHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHH
T ss_pred EEEeCCCCCC----CHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHH
Confidence 3567776433 355677888899987655 4422 23577889999999985
No 197
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.22 E-value=1.6e+02 Score=17.94 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=37.0
Q ss_pred CCcccccccc-cCCCCChhHHHHHHHHHhCCeeEEEeCC---eeEEEEcCHHHHHHHHh
Q 044206 51 SWPVIGHLHL-LGGPEPSHWVLGKMADEYGPIFKIKMGI---NRALVVSNWEMAKECLT 105 (245)
Q Consensus 51 ~~p~lG~~~~-~~~~~~~~~~~~~~~~~yG~v~~~~~~~---~~~v~~~~p~~~~~il~ 105 (245)
.--++|+++. -. ....+.++..+||.|..+.+.. .-.|-..+++.+..+..
T Consensus 16 ~~l~V~nLp~~~~----te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 16 RVVHIMDFQRGKN----LRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CEEEEESCCCSSS----HHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCcC----CHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 3456888875 32 4556778889999999888743 34677889988888874
No 198
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.20 E-value=1e+02 Score=18.94 Aligned_cols=55 Identities=9% Similarity=-0.035 Sum_probs=35.1
Q ss_pred cccccccccCCCCChhHHHHHHHHHhCCe-eEEEeC--------CeeEEEEcCHHHHHHHHhhCCccc
Q 044206 53 PVIGHLHLLGGPEPSHWVLGKMADEYGPI-FKIKMG--------INRALVVSNWEMAKECLTTHDKVF 111 (245)
Q Consensus 53 p~lG~~~~~~~~~~~~~~~~~~~~~yG~v-~~~~~~--------~~~~v~~~~p~~~~~il~~~~~~~ 111 (245)
-++|+++.-. ....+.++..+||.| ..+.+. |.-.|-..+++.++..+..++..+
T Consensus 18 l~V~nLp~~~----t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~ 81 (114)
T 2cpy_A 18 AHITNIPFSI----TKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKL 81 (114)
T ss_dssp EEEESCCTTS----CHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEE
T ss_pred EEEeCcCCcC----CHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCcc
Confidence 4677776533 345567777889988 333331 234677889999999986544333
No 199
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=20.14 E-value=1.4e+02 Score=17.14 Aligned_cols=55 Identities=13% Similarity=0.260 Sum_probs=32.7
Q ss_pred ccccccccCCCCChhHHHHHHHHHhCCeeEEEeCC---------eeEEEEcCHHHHHHHHhh-CCccccC
Q 044206 54 VIGHLHLLGGPEPSHWVLGKMADEYGPIFKIKMGI---------NRALVVSNWEMAKECLTT-HDKVFAS 113 (245)
Q Consensus 54 ~lG~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~---------~~~v~~~~p~~~~~il~~-~~~~~~~ 113 (245)
++|++..-. ....+.++..+||+|..+.+.. --.|-..+++ +.+.+.. ++..+.+
T Consensus 5 ~V~nLp~~~----t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g 69 (90)
T 2ki2_A 5 YVGNLVYSA----TSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG 69 (90)
T ss_dssp EEEEECTTS----SHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS
T ss_pred EECCCCCCC----CHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECC
Confidence 355655322 3445667778899988777631 1246678888 7776643 3333433
Done!