BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044214
         (385 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SIM|A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase
           From Crocus Vernus
 pdb|3SIM|B Chain B, Crystallographic Structure Analysis Of Family 18 Chitinase
           From Crocus Vernus
          Length = 275

 Score = 35.0 bits (79), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 12/80 (15%)

Query: 175 RVNAFKRNHPDV------GNEKLSSNVMKYAQGVPLALKVLVWES-AISKLQRILHPSIL 227
           +++A K +HP+V      G   + SN +++      A  V  W S A++ L RI+    L
Sbjct: 65  QISAIKSSHPNVRVAVSLGGASVGSNTVQFQ-----AASVDSWVSNAVTSLTRIIQRYNL 119

Query: 228 EVLKISYDSLEDKEKNIFLD 247
           + + I Y+  ++ +KN F +
Sbjct: 120 DGIDIDYEHFQNTDKNTFAE 139


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.139    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,838,241
Number of Sequences: 62578
Number of extensions: 427125
Number of successful extensions: 936
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 936
Number of HSP's gapped (non-prelim): 1
length of query: 385
length of database: 14,973,337
effective HSP length: 101
effective length of query: 284
effective length of database: 8,652,959
effective search space: 2457440356
effective search space used: 2457440356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)