Query 044214
Match_columns 385
No_of_seqs 307 out of 2410
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 12:34:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.9E-57 1.1E-61 459.5 23.8 342 32-380 161-611 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.4E-53 3.1E-58 454.3 36.2 381 1-384 158-610 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 8.3E-39 1.8E-43 293.9 13.5 234 34-272 1-284 (287)
4 PRK04841 transcriptional regul 99.7 9E-15 2E-19 155.1 21.2 267 23-308 8-334 (903)
5 COG2909 MalT ATP-dependent tra 99.4 5.9E-12 1.3E-16 124.5 17.3 270 23-309 13-341 (894)
6 PRK00411 cdc6 cell division co 99.4 2.9E-11 6.2E-16 116.2 19.6 259 23-287 24-358 (394)
7 COG3899 Predicted ATPase [Gene 99.3 4.8E-12 1E-16 130.8 11.6 275 30-309 1-389 (849)
8 TIGR00635 ruvB Holliday juncti 99.3 1.3E-11 2.8E-16 114.4 11.5 248 29-292 4-294 (305)
9 PRK00080 ruvB Holliday junctio 99.3 2.8E-11 6E-16 113.1 12.7 239 26-291 22-314 (328)
10 TIGR02928 orc1/cdc6 family rep 99.3 5.6E-10 1.2E-14 106.1 21.9 115 23-142 9-141 (365)
11 PF01637 Arch_ATPase: Archaeal 99.1 5.8E-11 1.3E-15 105.3 4.4 55 31-87 1-55 (234)
12 TIGR03015 pepcterm_ATPase puta 99.1 5E-09 1.1E-13 95.2 16.5 151 52-209 43-238 (269)
13 COG3903 Predicted ATPase [Gene 99.0 7.9E-10 1.7E-14 101.8 5.5 253 51-310 13-318 (414)
14 PF05729 NACHT: NACHT domain 99.0 4E-09 8.6E-14 88.2 9.4 114 53-170 1-132 (166)
15 cd00009 AAA The AAA+ (ATPases 98.9 4.2E-08 9.1E-13 79.9 12.0 123 32-169 1-131 (151)
16 PF13191 AAA_16: AAA ATPase do 98.8 3E-09 6.6E-14 90.8 4.3 50 30-79 1-51 (185)
17 COG2256 MGS1 ATPase related to 98.8 3.8E-08 8.1E-13 90.4 10.5 147 29-203 24-184 (436)
18 PF13173 AAA_14: AAA domain 98.7 6.1E-08 1.3E-12 77.6 9.2 101 53-172 3-103 (128)
19 PTZ00202 tuzin; Provisional 98.7 1.6E-07 3.5E-12 87.9 11.8 102 25-137 258-368 (550)
20 PF13401 AAA_22: AAA domain; P 98.7 8.8E-08 1.9E-12 76.9 8.5 109 52-167 4-125 (131)
21 COG1474 CDC6 Cdc6-related prot 98.7 7.5E-07 1.6E-11 83.7 15.6 114 23-141 11-134 (366)
22 PRK12323 DNA polymerase III su 98.6 2.8E-06 6.1E-11 83.9 18.3 51 26-77 13-63 (700)
23 PRK07003 DNA polymerase III su 98.6 3.1E-06 6.7E-11 84.9 17.3 51 26-77 13-63 (830)
24 PF05496 RuvB_N: Holliday junc 98.6 1.2E-07 2.5E-12 81.4 6.5 57 25-81 20-79 (233)
25 PTZ00112 origin recognition co 98.6 1.8E-06 4E-11 87.2 15.3 114 23-141 749-880 (1164)
26 PRK13342 recombination factor 98.5 5.6E-07 1.2E-11 86.8 10.9 111 26-163 9-124 (413)
27 PLN03025 replication factor C 98.5 1.3E-06 2.7E-11 81.4 12.1 126 26-167 10-138 (319)
28 PRK00440 rfc replication facto 98.5 3.6E-06 7.8E-11 78.4 14.3 50 27-78 15-64 (319)
29 PRK06893 DNA replication initi 98.5 1.5E-06 3.2E-11 76.9 10.6 36 52-87 39-74 (229)
30 PRK12402 replication factor C 98.4 1.6E-06 3.5E-11 81.4 10.7 50 27-78 13-62 (337)
31 PRK08691 DNA polymerase III su 98.4 1.6E-05 3.5E-10 79.5 17.4 50 26-76 13-62 (709)
32 PRK14961 DNA polymerase III su 98.4 6.7E-06 1.4E-10 77.9 14.3 51 26-77 13-63 (363)
33 PRK14960 DNA polymerase III su 98.4 4.7E-06 1E-10 82.6 12.9 51 26-77 12-62 (702)
34 PRK07471 DNA polymerase III su 98.4 1.2E-05 2.7E-10 75.7 15.3 52 24-76 14-65 (365)
35 PRK09376 rho transcription ter 98.4 9.6E-07 2.1E-11 82.2 7.1 97 41-141 159-267 (416)
36 PRK04195 replication factor C 98.3 2.5E-06 5.5E-11 83.9 10.1 51 26-76 11-63 (482)
37 PRK14949 DNA polymerase III su 98.3 6.3E-06 1.4E-10 84.2 13.0 51 26-78 13-64 (944)
38 TIGR03420 DnaA_homol_Hda DnaA 98.3 1.9E-06 4.1E-11 76.1 8.3 58 28-87 14-73 (226)
39 KOG2028 ATPase related to the 98.3 2.3E-06 5.1E-11 77.6 8.6 118 29-169 138-262 (554)
40 PRK14951 DNA polymerase III su 98.3 5.7E-05 1.2E-09 75.6 18.9 50 26-76 13-62 (618)
41 PRK14958 DNA polymerase III su 98.3 5.9E-05 1.3E-09 74.3 18.5 50 26-76 13-62 (509)
42 TIGR01242 26Sp45 26S proteasom 98.3 3.4E-06 7.3E-11 80.1 9.5 56 25-80 118-184 (364)
43 cd01128 rho_factor Transcripti 98.3 2.2E-06 4.8E-11 76.3 7.5 88 51-141 15-114 (249)
44 PF00004 AAA: ATPase family as 98.3 7.6E-06 1.7E-10 65.4 10.1 23 55-77 1-23 (132)
45 TIGR02639 ClpA ATP-dependent C 98.3 1.5E-05 3.3E-10 82.3 14.6 49 28-78 181-229 (731)
46 KOG2543 Origin recognition com 98.3 6.8E-06 1.5E-10 75.2 10.4 111 26-144 3-129 (438)
47 PRK14957 DNA polymerase III su 98.3 1.7E-05 3.6E-10 78.2 14.0 51 26-77 13-63 (546)
48 PRK14964 DNA polymerase III su 98.3 1.6E-05 3.5E-10 77.2 13.7 50 26-76 10-59 (491)
49 PRK08116 hypothetical protein; 98.3 8.3E-06 1.8E-10 73.7 10.8 102 53-168 115-221 (268)
50 PRK05564 DNA polymerase III su 98.2 2.2E-05 4.9E-10 72.9 13.6 161 29-207 4-188 (313)
51 PRK14956 DNA polymerase III su 98.2 1.5E-05 3.2E-10 76.8 12.3 52 26-78 15-66 (484)
52 PRK14962 DNA polymerase III su 98.2 2.3E-05 5E-10 76.3 13.9 51 26-77 11-61 (472)
53 PRK06645 DNA polymerase III su 98.2 2.2E-05 4.7E-10 76.9 13.6 51 26-77 18-68 (507)
54 PRK14969 DNA polymerase III su 98.2 2.9E-05 6.3E-10 76.9 14.6 51 26-77 13-63 (527)
55 PRK14963 DNA polymerase III su 98.2 1.5E-05 3.3E-10 78.2 12.5 51 26-77 11-61 (504)
56 TIGR02397 dnaX_nterm DNA polym 98.2 3.6E-05 7.8E-10 72.9 14.7 51 26-77 11-61 (355)
57 COG2255 RuvB Holliday junction 98.2 1.9E-05 4.1E-10 69.7 10.9 242 25-293 22-317 (332)
58 TIGR03345 VI_ClpV1 type VI sec 98.2 3.7E-05 8.1E-10 80.3 15.1 51 26-78 184-234 (852)
59 PRK08727 hypothetical protein; 98.2 1.2E-05 2.6E-10 71.3 9.8 58 28-87 18-76 (233)
60 PF05621 TniB: Bacterial TniB 98.2 4.8E-05 1E-09 68.6 13.6 110 27-141 32-156 (302)
61 PF14516 AAA_35: AAA-like doma 98.2 0.00044 9.6E-09 64.6 20.7 114 24-141 6-138 (331)
62 PRK05896 DNA polymerase III su 98.2 0.00018 3.8E-09 71.4 18.5 51 26-77 13-63 (605)
63 PF05673 DUF815: Protein of un 98.2 1.5E-05 3.2E-10 69.6 9.8 56 24-79 22-79 (249)
64 PRK14955 DNA polymerase III su 98.2 3.7E-05 8E-10 73.8 13.5 51 26-77 13-63 (397)
65 CHL00095 clpC Clp protease ATP 98.2 4.9E-05 1.1E-09 79.6 15.4 47 29-77 179-225 (821)
66 PRK08903 DnaA regulatory inact 98.2 2E-05 4.3E-10 69.7 10.8 59 28-87 17-77 (227)
67 PRK13341 recombination factor 98.2 8.9E-06 1.9E-10 83.0 9.5 53 26-80 25-80 (725)
68 PRK09112 DNA polymerase III su 98.1 2.2E-05 4.7E-10 73.6 11.4 54 24-78 18-71 (351)
69 PRK07994 DNA polymerase III su 98.1 3.1E-05 6.8E-10 77.6 12.9 52 26-78 13-64 (647)
70 PRK03992 proteasome-activating 98.1 1.6E-05 3.5E-10 75.9 10.2 53 26-78 128-191 (389)
71 PRK14950 DNA polymerase III su 98.1 8.7E-05 1.9E-09 74.7 15.8 51 26-77 13-63 (585)
72 PRK10865 protein disaggregatio 98.1 3E-05 6.4E-10 81.2 12.8 49 28-78 177-225 (857)
73 TIGR00678 holB DNA polymerase 98.1 0.0001 2.2E-09 63.0 14.1 37 40-77 3-39 (188)
74 TIGR00767 rho transcription te 98.1 1.1E-05 2.4E-10 75.6 8.4 88 52-142 168-267 (415)
75 PRK07940 DNA polymerase III su 98.1 4.7E-05 1E-09 72.5 12.6 49 29-77 5-61 (394)
76 PRK14088 dnaA chromosomal repl 98.1 4.2E-05 9.1E-10 74.2 12.4 94 31-141 108-205 (440)
77 PRK09111 DNA polymerase III su 98.1 0.00026 5.7E-09 70.9 18.2 52 26-78 21-72 (598)
78 PHA02544 44 clamp loader, smal 98.1 2E-05 4.4E-10 73.3 9.8 51 26-77 18-68 (316)
79 PRK14970 DNA polymerase III su 98.1 7.4E-05 1.6E-09 71.1 13.7 51 26-77 14-64 (367)
80 PRK08084 DNA replication initi 98.1 2.5E-05 5.4E-10 69.3 9.5 57 29-87 22-80 (235)
81 PRK05642 DNA replication initi 98.0 3.2E-05 7E-10 68.6 9.8 35 53-87 46-80 (234)
82 PF00308 Bac_DnaA: Bacterial d 98.0 2.3E-05 4.9E-10 68.7 8.3 120 30-168 10-140 (219)
83 TIGR02881 spore_V_K stage V sp 98.0 2.8E-05 6E-10 70.3 8.7 48 30-77 7-67 (261)
84 KOG0989 Replication factor C, 98.0 0.0002 4.4E-09 63.9 13.6 125 25-166 32-168 (346)
85 TIGR03346 chaperone_ClpB ATP-d 98.0 5.7E-05 1.2E-09 79.4 12.1 49 28-78 172-220 (852)
86 PRK12377 putative replication 98.0 2.8E-05 6E-10 69.2 8.3 72 52-139 101-172 (248)
87 PRK08181 transposase; Validate 98.0 5E-05 1.1E-09 68.4 10.0 99 53-168 107-209 (269)
88 smart00382 AAA ATPases associa 98.0 4.1E-05 8.8E-10 61.5 8.6 35 53-87 3-37 (148)
89 COG1373 Predicted ATPase (AAA+ 98.0 0.00016 3.4E-09 69.2 13.6 223 36-287 24-270 (398)
90 PRK07952 DNA replication prote 98.0 7.3E-05 1.6E-09 66.3 10.4 88 38-140 85-172 (244)
91 PRK14087 dnaA chromosomal repl 97.9 5.4E-05 1.2E-09 73.5 9.7 122 31-167 118-248 (450)
92 PRK14953 DNA polymerase III su 97.9 0.00038 8.1E-09 68.3 15.4 51 26-77 13-63 (486)
93 PRK06305 DNA polymerase III su 97.9 0.00027 5.9E-09 68.7 14.2 51 26-77 14-64 (451)
94 PRK10536 hypothetical protein; 97.9 0.00011 2.3E-09 65.0 10.3 132 29-168 55-213 (262)
95 PRK00149 dnaA chromosomal repl 97.9 6.9E-05 1.5E-09 73.2 10.2 120 31-167 125-253 (450)
96 PRK06921 hypothetical protein; 97.9 3.5E-05 7.5E-10 69.6 7.5 36 52-87 117-153 (266)
97 PRK08451 DNA polymerase III su 97.9 0.00027 6E-09 69.5 14.2 50 26-76 11-60 (535)
98 PRK14952 DNA polymerase III su 97.9 0.00015 3.2E-09 72.3 12.4 51 26-77 10-60 (584)
99 TIGR03689 pup_AAA proteasome A 97.9 5E-05 1.1E-09 74.2 8.9 55 25-79 178-243 (512)
100 PRK07764 DNA polymerase III su 97.9 0.00011 2.3E-09 76.2 11.7 51 26-77 12-62 (824)
101 PRK11331 5-methylcytosine-spec 97.9 3.4E-05 7.4E-10 73.5 7.2 100 29-141 175-283 (459)
102 PRK09183 transposase/IS protei 97.9 6.1E-05 1.3E-09 67.7 8.5 34 53-86 103-136 (259)
103 PRK11034 clpA ATP-dependent Cl 97.9 0.00026 5.6E-09 72.8 13.9 46 29-76 186-231 (758)
104 PRK06526 transposase; Provisio 97.8 2.7E-05 5.9E-10 69.7 5.5 33 53-85 99-131 (254)
105 PF01695 IstB_IS21: IstB-like 97.8 2.3E-05 5E-10 66.3 4.8 36 52-87 47-82 (178)
106 TIGR00362 DnaA chromosomal rep 97.8 0.00012 2.7E-09 70.5 10.2 120 31-167 113-241 (405)
107 TIGR02903 spore_lon_C ATP-depe 97.8 0.00012 2.5E-09 74.1 10.1 49 26-76 151-199 (615)
108 PRK05563 DNA polymerase III su 97.8 0.0007 1.5E-08 67.7 15.4 50 26-76 13-62 (559)
109 CHL00181 cbbX CbbX; Provisiona 97.8 0.00053 1.2E-08 62.6 13.3 25 53-77 60-84 (287)
110 PRK06835 DNA replication prote 97.8 6.8E-05 1.5E-09 69.6 7.5 35 53-87 184-218 (329)
111 PRK06647 DNA polymerase III su 97.8 0.00068 1.5E-08 67.6 14.6 51 26-77 13-63 (563)
112 PTZ00454 26S protease regulato 97.8 0.00022 4.7E-09 68.1 10.7 56 24-79 140-206 (398)
113 KOG2227 Pre-initiation complex 97.8 0.00023 5E-09 67.1 10.4 124 10-142 135-268 (529)
114 PRK12608 transcription termina 97.7 0.00017 3.7E-09 67.3 9.4 99 38-141 120-231 (380)
115 TIGR02639 ClpA ATP-dependent C 97.7 0.00023 4.9E-09 73.8 11.5 114 28-153 453-578 (731)
116 COG1484 DnaC DNA replication p 97.7 0.00012 2.5E-09 65.7 8.2 73 51-139 104-176 (254)
117 COG1222 RPT1 ATP-dependent 26S 97.7 0.00025 5.4E-09 64.8 10.1 124 29-172 151-304 (406)
118 TIGR00602 rad24 checkpoint pro 97.7 6.1E-05 1.3E-09 75.5 6.9 53 25-77 80-135 (637)
119 PRK07399 DNA polymerase III su 97.7 0.00041 9E-09 64.1 11.9 47 29-76 4-50 (314)
120 PRK08939 primosomal protein Dn 97.7 0.0002 4.3E-09 65.9 9.7 118 33-167 135-260 (306)
121 KOG0991 Replication factor C, 97.7 0.0002 4.4E-09 61.4 8.9 48 28-77 26-73 (333)
122 COG0470 HolB ATPase involved i 97.7 0.00047 1E-08 64.3 12.5 124 30-167 2-148 (325)
123 PRK07133 DNA polymerase III su 97.7 0.00062 1.3E-08 69.0 13.7 50 26-76 15-64 (725)
124 PRK09087 hypothetical protein; 97.7 0.00031 6.8E-09 61.8 10.3 25 52-76 44-68 (226)
125 PRK14954 DNA polymerase III su 97.7 0.00036 7.9E-09 70.1 11.9 51 26-77 13-63 (620)
126 PRK14086 dnaA chromosomal repl 97.7 0.0002 4.4E-09 71.0 9.9 96 53-167 315-419 (617)
127 cd01131 PilT Pilus retraction 97.7 0.00013 2.7E-09 63.0 7.6 109 54-170 3-111 (198)
128 CHL00095 clpC Clp protease ATP 97.7 0.00024 5.1E-09 74.5 11.0 130 29-167 509-661 (821)
129 PRK14948 DNA polymerase III su 97.7 0.00082 1.8E-08 67.8 14.4 52 26-78 13-64 (620)
130 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00027 6E-09 74.3 11.4 130 28-167 564-717 (852)
131 PTZ00361 26 proteosome regulat 97.7 0.00013 2.8E-09 70.2 8.3 54 27-80 181-245 (438)
132 PF04665 Pox_A32: Poxvirus A32 97.7 9.1E-05 2E-09 65.1 6.6 36 53-88 14-49 (241)
133 PRK14959 DNA polymerase III su 97.7 0.00042 9.2E-09 69.1 11.9 50 27-77 14-63 (624)
134 PRK12422 chromosomal replicati 97.7 0.00041 8.9E-09 67.3 11.5 99 52-167 141-244 (445)
135 PRK10865 protein disaggregatio 97.7 0.00027 5.9E-09 74.1 11.0 114 29-152 568-694 (857)
136 CHL00176 ftsH cell division pr 97.7 0.00024 5.3E-09 71.7 10.1 48 29-76 183-240 (638)
137 PF07728 AAA_5: AAA domain (dy 97.7 8.4E-05 1.8E-09 60.2 5.5 22 55-76 2-23 (139)
138 PRK08118 topology modulation p 97.7 6.7E-05 1.5E-09 62.8 5.0 34 53-86 2-38 (167)
139 PRK11889 flhF flagellar biosyn 97.7 0.0014 3E-08 61.6 14.0 37 51-87 240-276 (436)
140 TIGR02880 cbbX_cfxQ probable R 97.6 0.00035 7.6E-09 63.8 9.9 49 30-78 23-84 (284)
141 TIGR03345 VI_ClpV1 type VI sec 97.6 0.0004 8.8E-09 72.7 11.5 51 29-79 566-623 (852)
142 cd01133 F1-ATPase_beta F1 ATP 97.6 0.00019 4.1E-09 64.4 7.8 89 51-142 68-175 (274)
143 PF13177 DNA_pol3_delta2: DNA 97.6 0.00096 2.1E-08 55.5 11.5 121 33-169 1-143 (162)
144 PRK14971 DNA polymerase III su 97.6 0.0013 2.8E-08 66.4 14.5 51 26-77 14-64 (614)
145 COG0542 clpA ATP-binding subun 97.6 0.00046 9.9E-09 70.1 11.0 127 29-166 491-642 (786)
146 PF02562 PhoH: PhoH-like prote 97.6 0.00048 1E-08 59.2 9.6 127 34-168 5-156 (205)
147 PRK06620 hypothetical protein; 97.6 0.00012 2.7E-09 63.8 6.1 50 27-76 15-68 (214)
148 PRK09361 radB DNA repair and r 97.6 0.00048 1E-08 60.7 9.9 47 41-87 12-58 (225)
149 PRK05707 DNA polymerase III su 97.6 0.0012 2.7E-08 61.4 13.0 27 51-77 21-47 (328)
150 PHA00729 NTP-binding motif con 97.6 0.00032 6.9E-09 61.0 8.4 28 50-77 15-42 (226)
151 PRK14965 DNA polymerase III su 97.6 0.00091 2E-08 67.2 12.7 51 26-77 13-63 (576)
152 PF13207 AAA_17: AAA domain; P 97.6 7.4E-05 1.6E-09 58.9 3.7 23 54-76 1-23 (121)
153 PRK00771 signal recognition pa 97.6 0.0019 4E-08 62.3 13.7 36 51-86 94-129 (437)
154 PRK14974 cell division protein 97.5 0.0022 4.8E-08 59.6 13.7 29 51-79 139-167 (336)
155 TIGR01241 FtsH_fam ATP-depende 97.5 0.00045 9.7E-09 68.4 9.6 49 29-77 55-113 (495)
156 PF00448 SRP54: SRP54-type pro 97.5 0.0011 2.3E-08 57.0 10.3 56 52-111 1-56 (196)
157 PRK06696 uridine kinase; Valid 97.5 0.00021 4.6E-09 62.9 6.1 46 34-79 3-49 (223)
158 PRK04296 thymidine kinase; Pro 97.5 0.00025 5.5E-09 60.7 6.4 108 53-170 3-118 (190)
159 PRK11034 clpA ATP-dependent Cl 97.5 0.00057 1.2E-08 70.3 9.8 49 29-77 458-513 (758)
160 cd01120 RecA-like_NTPases RecA 97.5 0.00082 1.8E-08 55.5 9.1 34 54-87 1-34 (165)
161 COG1618 Predicted nucleotide k 97.5 0.00015 3.2E-09 58.8 4.2 39 52-90 5-45 (179)
162 TIGR01243 CDC48 AAA family ATP 97.5 0.00057 1.2E-08 71.0 9.7 52 28-79 177-239 (733)
163 PRK07261 topology modulation p 97.5 0.00025 5.4E-09 59.6 5.7 23 54-76 2-24 (171)
164 PRK07667 uridine kinase; Provi 97.4 0.00033 7.1E-09 60.2 6.6 42 38-79 3-44 (193)
165 cd01394 radB RadB. The archaea 97.4 0.001 2.2E-08 58.3 9.9 48 40-87 7-54 (218)
166 COG2607 Predicted ATPase (AAA+ 97.4 0.0011 2.3E-08 57.4 9.4 99 29-153 60-165 (287)
167 TIGR02237 recomb_radB DNA repa 97.4 0.00083 1.8E-08 58.5 9.1 38 50-87 10-47 (209)
168 PRK12724 flagellar biosynthesi 97.4 0.0062 1.3E-07 57.9 15.1 25 52-76 223-247 (432)
169 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00015 3.2E-09 67.4 4.1 49 30-78 52-104 (361)
170 KOG0744 AAA+-type ATPase [Post 97.4 0.0004 8.7E-09 62.5 6.7 79 52-141 177-261 (423)
171 KOG0741 AAA+-type ATPase [Post 97.4 0.0013 2.8E-08 63.0 10.3 115 50-182 536-666 (744)
172 PF12799 LRR_4: Leucine Rich r 97.4 7.9E-05 1.7E-09 47.1 1.6 38 346-383 1-43 (44)
173 KOG0733 Nuclear AAA ATPase (VC 97.4 0.00039 8.4E-09 67.6 6.6 92 29-140 190-292 (802)
174 PF13671 AAA_33: AAA domain; P 97.4 0.00042 9.2E-09 56.2 6.1 24 54-77 1-24 (143)
175 TIGR01243 CDC48 AAA family ATP 97.4 0.0024 5.1E-08 66.5 12.8 51 29-79 453-514 (733)
176 PLN00020 ribulose bisphosphate 97.4 0.00074 1.6E-08 62.6 7.9 30 50-79 146-175 (413)
177 COG0593 DnaA ATPase involved i 97.3 0.0015 3.3E-08 61.7 10.2 100 51-168 112-218 (408)
178 PF14532 Sigma54_activ_2: Sigm 97.3 0.00012 2.5E-09 59.3 2.0 44 32-75 1-44 (138)
179 PRK05703 flhF flagellar biosyn 97.3 0.0079 1.7E-07 58.1 14.5 36 52-87 221-258 (424)
180 cd01393 recA_like RecA is a b 97.3 0.0026 5.7E-08 56.0 10.5 47 41-87 8-60 (226)
181 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.0022 4.7E-08 56.9 10.0 45 43-87 10-60 (235)
182 TIGR00064 ftsY signal recognit 97.3 0.0011 2.3E-08 60.1 8.1 80 4-87 21-107 (272)
183 KOG0733 Nuclear AAA ATPase (VC 97.3 0.0011 2.3E-08 64.7 8.1 100 52-171 545-660 (802)
184 cd00561 CobA_CobO_BtuR ATP:cor 97.3 0.001 2.2E-08 54.8 7.0 113 53-168 3-138 (159)
185 PF13855 LRR_8: Leucine rich r 97.2 0.00052 1.1E-08 46.8 4.4 54 321-376 2-61 (61)
186 KOG2228 Origin recognition com 97.2 0.0037 8.1E-08 56.8 10.9 185 27-217 22-238 (408)
187 PRK12726 flagellar biosynthesi 97.2 0.011 2.3E-07 55.5 14.3 37 51-87 205-241 (407)
188 PRK12723 flagellar biosynthesi 97.2 0.0049 1.1E-07 58.5 12.3 27 51-77 173-199 (388)
189 PRK05541 adenylylsulfate kinas 97.2 0.00048 1E-08 58.2 4.9 37 51-87 6-42 (176)
190 PRK06762 hypothetical protein; 97.2 0.0012 2.6E-08 55.2 7.2 24 53-76 3-26 (166)
191 COG4088 Predicted nucleotide k 97.2 0.0011 2.5E-08 55.9 6.8 28 53-80 2-29 (261)
192 PRK13695 putative NTPase; Prov 97.2 0.00084 1.8E-08 56.6 6.2 24 54-77 2-25 (174)
193 PRK08058 DNA polymerase III su 97.2 0.0043 9.3E-08 58.0 11.4 46 30-76 6-52 (329)
194 cd01121 Sms Sms (bacterial rad 97.2 0.0028 6.1E-08 60.0 10.2 94 39-140 69-168 (372)
195 PF13604 AAA_30: AAA domain; P 97.2 0.0022 4.7E-08 55.2 8.7 113 38-168 7-131 (196)
196 PRK10867 signal recognition pa 97.2 0.0046 1E-07 59.5 11.7 29 51-79 99-127 (433)
197 COG2842 Uncharacterized ATPase 97.1 0.006 1.3E-07 54.6 11.1 141 3-153 46-190 (297)
198 PF13238 AAA_18: AAA domain; P 97.1 0.00041 8.8E-09 55.0 3.4 22 55-76 1-22 (129)
199 TIGR01817 nifA Nif-specific re 97.1 0.0049 1.1E-07 61.7 11.8 51 26-76 193-243 (534)
200 CHL00195 ycf46 Ycf46; Provisio 97.1 0.0012 2.5E-08 64.7 6.9 50 29-78 228-285 (489)
201 KOG0731 AAA+-type ATPase conta 97.1 0.0064 1.4E-07 61.6 12.1 126 27-172 309-464 (774)
202 TIGR01420 pilT_fam pilus retra 97.1 0.0014 3E-08 61.7 6.9 108 53-168 123-230 (343)
203 PF01583 APS_kinase: Adenylyls 97.1 0.00096 2.1E-08 54.7 5.1 36 52-87 2-37 (156)
204 PRK08769 DNA polymerase III su 97.1 0.018 3.8E-07 53.3 13.9 164 38-208 13-207 (319)
205 TIGR00959 ffh signal recogniti 97.1 0.014 3E-07 56.2 13.6 27 51-77 98-124 (428)
206 PF00485 PRK: Phosphoribulokin 97.1 0.0006 1.3E-08 58.6 3.9 26 54-79 1-26 (194)
207 PRK06067 flagellar accessory p 97.0 0.0045 9.8E-08 54.9 9.6 48 40-87 13-60 (234)
208 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.002 4.4E-08 52.5 6.7 102 53-172 27-131 (144)
209 TIGR03574 selen_PSTK L-seryl-t 97.0 0.0022 4.9E-08 57.4 7.6 26 54-79 1-26 (249)
210 KOG1514 Origin recognition com 97.0 0.0065 1.4E-07 60.3 11.0 131 27-165 394-546 (767)
211 COG1066 Sms Predicted ATP-depe 97.0 0.0066 1.4E-07 56.8 10.5 94 38-140 79-178 (456)
212 KOG0734 AAA+-type ATPase conta 97.0 0.0036 7.8E-08 60.2 8.9 48 29-76 304-361 (752)
213 PF08433 KTI12: Chromatin asso 97.0 0.0018 4E-08 58.4 6.8 35 53-87 2-36 (270)
214 COG0466 Lon ATP-dependent Lon 97.0 0.00076 1.6E-08 67.0 4.6 53 29-81 323-379 (782)
215 COG2812 DnaX DNA polymerase II 97.0 0.018 3.9E-07 56.3 13.8 131 27-168 14-159 (515)
216 PTZ00301 uridine kinase; Provi 97.0 0.00075 1.6E-08 58.6 3.9 29 52-80 3-31 (210)
217 cd01129 PulE-GspE PulE/GspE Th 97.0 0.0021 4.5E-08 58.0 6.7 102 37-151 68-170 (264)
218 cd02027 APSK Adenosine 5'-phos 97.0 0.0095 2.1E-07 48.8 10.1 24 54-77 1-24 (149)
219 KOG0729 26S proteasome regulat 97.0 0.0099 2.2E-07 52.3 10.4 121 30-170 178-328 (435)
220 TIGR00763 lon ATP-dependent pr 96.9 0.0013 2.7E-08 68.7 5.8 51 30-80 321-375 (775)
221 KOG0735 AAA+-type ATPase [Post 96.9 0.0058 1.3E-07 60.8 9.7 73 52-140 431-504 (952)
222 PRK15455 PrkA family serine pr 96.9 0.0011 2.4E-08 65.1 4.8 50 29-78 76-129 (644)
223 COG0572 Udk Uridine kinase [Nu 96.9 0.0012 2.7E-08 56.7 4.6 30 50-79 6-35 (218)
224 PRK14722 flhF flagellar biosyn 96.9 0.011 2.3E-07 55.8 11.2 83 52-140 137-225 (374)
225 PRK09270 nucleoside triphospha 96.9 0.0014 3E-08 58.0 5.0 31 49-79 30-60 (229)
226 TIGR01425 SRP54_euk signal rec 96.9 0.024 5.1E-07 54.4 13.5 37 51-87 99-135 (429)
227 PRK13531 regulatory ATPase Rav 96.9 0.0024 5.1E-08 61.8 6.7 46 29-78 20-65 (498)
228 PRK06547 hypothetical protein; 96.9 0.0016 3.6E-08 54.6 5.0 28 49-76 12-39 (172)
229 PRK08233 hypothetical protein; 96.9 0.00089 1.9E-08 56.8 3.5 26 52-77 3-28 (182)
230 TIGR00708 cobA cob(I)alamin ad 96.9 0.0068 1.5E-07 50.5 8.5 114 53-168 6-140 (173)
231 PRK05480 uridine/cytidine kina 96.9 0.0011 2.4E-08 57.7 4.0 27 50-76 4-30 (209)
232 COG1875 NYN ribonuclease and A 96.9 0.0077 1.7E-07 55.4 9.4 161 33-208 228-418 (436)
233 PRK06090 DNA polymerase III su 96.9 0.1 2.2E-06 48.4 17.0 150 38-209 12-201 (319)
234 PRK04040 adenylate kinase; Pro 96.9 0.0012 2.6E-08 56.4 4.0 26 52-77 2-27 (188)
235 cd03214 ABC_Iron-Siderophores_ 96.9 0.0063 1.4E-07 51.6 8.5 117 52-172 25-162 (180)
236 cd03247 ABCC_cytochrome_bd The 96.9 0.0056 1.2E-07 51.8 8.2 115 53-172 29-161 (178)
237 PRK11823 DNA repair protein Ra 96.8 0.0081 1.8E-07 58.5 10.2 95 38-140 66-166 (446)
238 COG0468 RecA RecA/RadA recombi 96.8 0.0055 1.2E-07 55.3 8.3 91 45-140 53-151 (279)
239 PRK04301 radA DNA repair and r 96.8 0.01 2.2E-07 55.2 10.4 48 40-87 90-143 (317)
240 PF03308 ArgK: ArgK protein; 96.8 0.0032 6.9E-08 55.6 6.5 43 37-79 14-56 (266)
241 cd02019 NK Nucleoside/nucleoti 96.8 0.0011 2.3E-08 46.6 2.9 23 54-76 1-23 (69)
242 PRK06217 hypothetical protein; 96.8 0.009 2E-07 50.8 9.1 24 54-77 3-26 (183)
243 TIGR02858 spore_III_AA stage I 96.8 0.017 3.7E-07 52.1 11.3 115 50-172 109-233 (270)
244 PRK03839 putative kinase; Prov 96.8 0.0011 2.4E-08 56.3 3.4 24 54-77 2-25 (180)
245 PRK10463 hydrogenase nickel in 96.8 0.0037 8.1E-08 56.6 6.9 34 49-82 101-134 (290)
246 COG1223 Predicted ATPase (AAA+ 96.8 0.02 4.4E-07 50.3 11.0 49 29-77 121-176 (368)
247 TIGR02012 tigrfam_recA protein 96.8 0.0068 1.5E-07 55.9 8.6 49 39-87 41-90 (321)
248 PRK05439 pantothenate kinase; 96.8 0.004 8.7E-08 57.1 7.1 30 49-78 83-112 (311)
249 PF07726 AAA_3: ATPase family 96.8 0.0009 2E-08 52.5 2.3 28 55-82 2-29 (131)
250 PF08423 Rad51: Rad51; InterP 96.8 0.0042 9.1E-08 55.8 6.9 48 40-87 26-79 (256)
251 cd03238 ABC_UvrA The excision 96.8 0.0064 1.4E-07 51.3 7.6 22 53-74 22-43 (176)
252 cd03223 ABCD_peroxisomal_ALDP 96.8 0.0078 1.7E-07 50.3 8.2 113 53-171 28-151 (166)
253 PRK11608 pspF phage shock prot 96.8 0.0047 1E-07 57.7 7.5 48 28-75 5-52 (326)
254 KOG0736 Peroxisome assembly fa 96.8 0.0099 2.1E-07 59.7 9.9 93 29-141 672-775 (953)
255 cd03115 SRP The signal recogni 96.7 0.01 2.2E-07 49.8 9.0 34 54-87 2-35 (173)
256 TIGR00416 sms DNA repair prote 96.7 0.0098 2.1E-07 58.0 9.9 95 38-140 80-180 (454)
257 cd00983 recA RecA is a bacter 96.7 0.0033 7.1E-08 58.0 6.2 48 40-87 42-90 (325)
258 PRK00625 shikimate kinase; Pro 96.7 0.0013 2.8E-08 55.3 3.3 24 54-77 2-25 (173)
259 PRK14528 adenylate kinase; Pro 96.7 0.02 4.3E-07 48.8 10.7 24 53-76 2-25 (186)
260 PRK00131 aroK shikimate kinase 96.7 0.0014 2.9E-08 55.1 3.4 25 52-76 4-28 (175)
261 cd03216 ABC_Carb_Monos_I This 96.7 0.0022 4.8E-08 53.4 4.7 116 53-172 27-146 (163)
262 TIGR00235 udk uridine kinase. 96.7 0.0019 4E-08 56.2 4.3 28 50-77 4-31 (207)
263 COG4608 AppF ABC-type oligopep 96.7 0.0042 9.2E-08 55.1 6.5 122 52-176 39-178 (268)
264 PF00910 RNA_helicase: RNA hel 96.7 0.00098 2.1E-08 51.3 2.2 25 55-79 1-25 (107)
265 PRK00889 adenylylsulfate kinas 96.7 0.0027 5.9E-08 53.5 5.1 35 52-86 4-38 (175)
266 PRK15429 formate hydrogenlyase 96.7 0.014 3.1E-07 60.3 11.2 48 29-76 376-423 (686)
267 PRK12727 flagellar biosynthesi 96.7 0.015 3.3E-07 56.9 10.6 28 52-79 350-377 (559)
268 KOG0739 AAA+-type ATPase [Post 96.7 0.075 1.6E-06 47.8 13.8 95 26-140 130-235 (439)
269 PRK09354 recA recombinase A; P 96.7 0.0079 1.7E-07 56.0 8.3 49 39-87 46-95 (349)
270 PRK10733 hflB ATP-dependent me 96.7 0.0094 2E-07 60.9 9.6 50 30-79 153-212 (644)
271 PRK13765 ATP-dependent proteas 96.7 0.0027 5.9E-08 64.1 5.6 78 24-111 26-104 (637)
272 TIGR00150 HI0065_YjeE ATPase, 96.7 0.0026 5.6E-08 50.7 4.4 40 37-76 7-46 (133)
273 COG3267 ExeA Type II secretory 96.7 0.06 1.3E-06 47.3 13.0 112 23-140 22-141 (269)
274 COG1703 ArgK Putative periplas 96.6 0.0044 9.6E-08 55.5 6.1 64 38-104 37-100 (323)
275 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0018 4E-08 55.1 3.6 26 51-76 2-27 (188)
276 TIGR03499 FlhF flagellar biosy 96.6 0.011 2.4E-07 53.9 8.9 37 51-87 193-231 (282)
277 cd02028 UMPK_like Uridine mono 96.6 0.0026 5.7E-08 53.8 4.5 26 54-79 1-26 (179)
278 cd03222 ABC_RNaseL_inhibitor T 96.6 0.0049 1.1E-07 52.0 6.0 104 53-173 26-137 (177)
279 PRK03846 adenylylsulfate kinas 96.6 0.0035 7.6E-08 54.1 5.3 38 50-87 22-59 (198)
280 KOG2004 Mitochondrial ATP-depe 96.6 0.0022 4.9E-08 63.6 4.4 53 28-80 410-466 (906)
281 PF00006 ATP-synt_ab: ATP synt 96.6 0.0028 6.1E-08 55.1 4.6 80 53-140 16-115 (215)
282 TIGR02974 phageshock_pspF psp 96.6 0.0086 1.9E-07 55.9 8.1 45 31-75 1-45 (329)
283 COG0003 ArsA Predicted ATPase 96.6 0.0043 9.4E-08 57.2 5.9 36 52-87 2-37 (322)
284 PRK10416 signal recognition pa 96.6 0.0065 1.4E-07 56.3 7.1 36 51-86 113-148 (318)
285 PRK05917 DNA polymerase III su 96.6 0.21 4.6E-06 45.4 16.6 145 38-203 6-175 (290)
286 KOG1969 DNA replication checkp 96.6 0.0064 1.4E-07 60.6 7.3 73 50-141 324-398 (877)
287 TIGR00390 hslU ATP-dependent p 96.6 0.0025 5.3E-08 60.4 4.2 52 29-80 12-75 (441)
288 PRK13947 shikimate kinase; Pro 96.6 0.0019 4.1E-08 54.2 3.2 25 54-78 3-27 (171)
289 PRK05022 anaerobic nitric oxid 96.6 0.0097 2.1E-07 59.2 8.6 50 27-76 185-234 (509)
290 COG0467 RAD55 RecA-superfamily 96.6 0.005 1.1E-07 55.5 6.1 38 50-87 21-58 (260)
291 cd00227 CPT Chloramphenicol (C 96.6 0.0023 4.9E-08 54.0 3.6 25 53-77 3-27 (175)
292 PF03969 AFG1_ATPase: AFG1-lik 96.5 0.0085 1.8E-07 56.5 7.7 102 50-166 60-166 (362)
293 KOG1051 Chaperone HSP104 and r 96.5 0.031 6.7E-07 58.0 12.1 109 29-150 562-682 (898)
294 KOG1970 Checkpoint RAD17-RFC c 96.5 0.0096 2.1E-07 57.6 7.8 46 31-76 84-134 (634)
295 TIGR02238 recomb_DMC1 meiotic 96.5 0.019 4.2E-07 53.1 9.7 48 40-87 84-137 (313)
296 COG2884 FtsE Predicted ATPase 96.5 0.012 2.6E-07 49.3 7.4 57 118-176 143-205 (223)
297 TIGR02902 spore_lonB ATP-depen 96.5 0.0039 8.5E-08 62.1 5.4 47 28-76 64-110 (531)
298 PRK05986 cob(I)alamin adenolsy 96.5 0.014 3E-07 49.4 7.9 115 52-168 22-158 (191)
299 PRK10787 DNA-binding ATP-depen 96.5 0.0063 1.4E-07 63.3 7.0 52 29-80 322-377 (784)
300 TIGR00455 apsK adenylylsulfate 96.5 0.022 4.7E-07 48.4 9.3 28 51-78 17-44 (184)
301 TIGR01359 UMP_CMP_kin_fam UMP- 96.5 0.002 4.4E-08 54.7 2.9 23 54-76 1-23 (183)
302 cd01135 V_A-ATPase_B V/A-type 96.5 0.014 3.1E-07 52.4 8.2 87 52-142 69-178 (276)
303 cd03246 ABCC_Protease_Secretio 96.5 0.013 2.8E-07 49.3 7.7 112 53-172 29-160 (173)
304 COG3854 SpoIIIAA ncharacterize 96.5 0.019 4.1E-07 49.6 8.5 109 54-167 139-252 (308)
305 TIGR03600 phage_DnaB phage rep 96.5 0.064 1.4E-06 52.1 13.5 53 52-111 194-247 (421)
306 cd03228 ABCC_MRP_Like The MRP 96.5 0.0081 1.8E-07 50.4 6.4 112 53-173 29-160 (171)
307 cd00267 ABC_ATPase ABC (ATP-bi 96.5 0.0045 9.8E-08 51.2 4.7 113 53-173 26-145 (157)
308 PF00625 Guanylate_kin: Guanyl 96.5 0.0028 6.1E-08 53.9 3.6 36 52-87 2-37 (183)
309 COG1102 Cmk Cytidylate kinase 96.4 0.0025 5.5E-08 51.7 3.0 24 54-77 2-25 (179)
310 cd01122 GP4d_helicase GP4d_hel 96.4 0.039 8.4E-07 50.0 11.2 36 52-87 30-66 (271)
311 PRK12678 transcription termina 96.4 0.0081 1.8E-07 59.0 6.9 89 51-142 415-515 (672)
312 PRK05201 hslU ATP-dependent pr 96.4 0.0041 8.8E-08 59.0 4.7 52 29-80 15-78 (443)
313 KOG0743 AAA+-type ATPase [Post 96.4 0.0081 1.8E-07 56.8 6.5 25 52-76 235-259 (457)
314 PF03266 NTPase_1: NTPase; In 96.4 0.0026 5.7E-08 53.2 3.0 24 55-78 2-25 (168)
315 PRK09280 F0F1 ATP synthase sub 96.4 0.012 2.5E-07 56.9 7.7 87 52-141 144-249 (463)
316 PRK05537 bifunctional sulfate 96.4 0.0056 1.2E-07 61.3 5.8 52 27-78 367-418 (568)
317 PRK14721 flhF flagellar biosyn 96.4 0.052 1.1E-06 52.1 11.9 26 51-76 190-215 (420)
318 PRK14723 flhF flagellar biosyn 96.4 0.052 1.1E-06 55.7 12.5 25 52-76 185-209 (767)
319 cd02020 CMPK Cytidine monophos 96.4 0.0029 6.2E-08 51.4 3.0 23 54-76 1-23 (147)
320 PF00437 T2SE: Type II/IV secr 96.4 0.003 6.4E-08 57.4 3.4 126 30-167 105-231 (270)
321 PRK14738 gmk guanylate kinase; 96.4 0.0037 8.1E-08 54.3 3.8 29 47-75 8-36 (206)
322 cd03230 ABC_DR_subfamily_A Thi 96.3 0.013 2.8E-07 49.3 7.0 112 52-172 26-159 (173)
323 TIGR02322 phosphon_PhnN phosph 96.3 0.0032 7E-08 53.2 3.4 25 53-77 2-26 (179)
324 PRK10751 molybdopterin-guanine 96.3 0.0076 1.7E-07 50.4 5.4 29 51-79 5-33 (173)
325 PF02374 ArsA_ATPase: Anion-tr 96.3 0.0055 1.2E-07 56.5 5.0 35 53-87 2-36 (305)
326 TIGR02524 dot_icm_DotB Dot/Icm 96.3 0.0067 1.5E-07 57.1 5.7 105 52-165 134-243 (358)
327 PRK04132 replication factor C 96.3 0.12 2.5E-06 54.0 15.0 95 58-168 570-670 (846)
328 PTZ00088 adenylate kinase 1; P 96.3 0.01 2.2E-07 52.3 6.5 23 54-76 8-30 (229)
329 PLN03187 meiotic recombination 96.3 0.035 7.6E-07 51.9 10.4 47 41-87 115-167 (344)
330 KOG0730 AAA+-type ATPase [Post 96.3 0.0077 1.7E-07 59.5 6.1 51 31-81 436-497 (693)
331 COG1428 Deoxynucleoside kinase 96.3 0.0033 7.2E-08 53.5 3.2 26 52-77 4-29 (216)
332 PF03205 MobB: Molybdopterin g 96.3 0.0056 1.2E-07 49.5 4.4 35 53-87 1-36 (140)
333 cd02024 NRK1 Nicotinamide ribo 96.3 0.0028 6E-08 53.9 2.8 23 54-76 1-23 (187)
334 cd02021 GntK Gluconate kinase 96.3 0.0029 6.3E-08 51.8 2.8 23 54-76 1-23 (150)
335 PRK15453 phosphoribulokinase; 96.3 0.0068 1.5E-07 54.5 5.3 29 50-78 3-31 (290)
336 cd00544 CobU Adenosylcobinamid 96.3 0.049 1.1E-06 45.6 10.1 76 55-139 2-82 (169)
337 PRK13949 shikimate kinase; Pro 96.3 0.0035 7.5E-08 52.6 3.3 24 54-77 3-26 (169)
338 TIGR00554 panK_bact pantothena 96.3 0.011 2.4E-07 53.8 6.8 28 50-77 60-87 (290)
339 PRK06871 DNA polymerase III su 96.3 0.11 2.4E-06 48.2 13.3 122 38-168 11-147 (325)
340 TIGR03878 thermo_KaiC_2 KaiC d 96.3 0.0081 1.8E-07 54.1 5.8 38 50-87 34-71 (259)
341 PRK13948 shikimate kinase; Pro 96.3 0.0036 7.8E-08 53.0 3.3 27 51-77 9-35 (182)
342 PRK08506 replicative DNA helic 96.3 0.058 1.3E-06 53.0 12.1 53 52-111 192-244 (472)
343 cd00071 GMPK Guanosine monopho 96.3 0.0029 6.2E-08 51.1 2.6 27 54-80 1-27 (137)
344 KOG0728 26S proteasome regulat 96.3 0.056 1.2E-06 47.3 10.4 47 29-75 146-204 (404)
345 cd02023 UMPK Uridine monophosp 96.3 0.003 6.4E-08 54.5 2.8 23 54-76 1-23 (198)
346 cd03232 ABC_PDR_domain2 The pl 96.3 0.013 2.9E-07 50.2 6.8 24 52-75 33-56 (192)
347 COG0542 clpA ATP-binding subun 96.3 0.0054 1.2E-07 62.5 4.9 47 29-77 170-216 (786)
348 TIGR01039 atpD ATP synthase, F 96.3 0.017 3.7E-07 55.6 8.1 88 51-141 142-248 (461)
349 PRK12339 2-phosphoglycerate ki 96.3 0.0042 9.1E-08 53.4 3.6 25 52-76 3-27 (197)
350 cd01124 KaiC KaiC is a circadi 96.3 0.0057 1.2E-07 52.0 4.4 33 55-87 2-34 (187)
351 cd00464 SK Shikimate kinase (S 96.3 0.0038 8.3E-08 51.2 3.2 22 55-76 2-23 (154)
352 COG1936 Predicted nucleotide k 96.3 0.0033 7.1E-08 51.8 2.7 20 54-73 2-21 (180)
353 PF02456 Adeno_IVa2: Adenoviru 96.2 0.042 9.1E-07 49.5 9.8 154 52-209 87-294 (369)
354 TIGR03877 thermo_KaiC_1 KaiC d 96.2 0.011 2.3E-07 52.6 6.3 48 40-87 9-56 (237)
355 cd03281 ABC_MSH5_euk MutS5 hom 96.2 0.0077 1.7E-07 52.5 5.2 23 52-74 29-51 (213)
356 cd02025 PanK Pantothenate kina 96.2 0.0033 7.2E-08 55.1 2.9 24 54-77 1-24 (220)
357 PRK07993 DNA polymerase III su 96.2 0.11 2.4E-06 48.6 13.2 158 37-204 10-199 (334)
358 PRK12597 F0F1 ATP synthase sub 96.2 0.016 3.4E-07 56.2 7.6 86 52-141 143-248 (461)
359 cd03237 ABC_RNaseL_inhibitor_d 96.2 0.018 3.9E-07 51.4 7.6 25 52-76 25-49 (246)
360 PF03215 Rad17: Rad17 cell cyc 96.2 0.0055 1.2E-07 60.5 4.6 60 26-87 16-78 (519)
361 COG3640 CooC CO dehydrogenase 96.2 0.011 2.3E-07 51.2 5.8 26 54-79 2-27 (255)
362 KOG1532 GTPase XAB1, interacts 96.2 0.0058 1.3E-07 53.9 4.2 34 50-83 17-50 (366)
363 COG0541 Ffh Signal recognition 96.2 0.13 2.8E-06 48.8 13.2 41 39-79 80-127 (451)
364 cd01132 F1_ATPase_alpha F1 ATP 96.2 0.014 3E-07 52.4 6.6 90 52-148 69-180 (274)
365 PLN02924 thymidylate kinase 96.2 0.025 5.3E-07 49.6 8.1 28 52-79 16-43 (220)
366 PRK09435 membrane ATPase/prote 96.2 0.013 2.9E-07 54.3 6.7 42 38-79 42-83 (332)
367 PF06068 TIP49: TIP49 C-termin 96.2 0.018 4E-07 53.5 7.4 56 27-82 22-80 (398)
368 COG0714 MoxR-like ATPases [Gen 96.2 0.0074 1.6E-07 56.5 5.1 49 29-81 24-72 (329)
369 COG0563 Adk Adenylate kinase a 96.2 0.0044 9.5E-08 52.3 3.2 23 54-76 2-24 (178)
370 cd03283 ABC_MutS-like MutS-lik 96.2 0.042 9.1E-07 47.4 9.3 23 53-75 26-48 (199)
371 smart00534 MUTSac ATPase domai 96.2 0.0033 7.2E-08 53.5 2.5 21 54-74 1-21 (185)
372 PRK13975 thymidylate kinase; P 96.2 0.0052 1.1E-07 52.8 3.7 26 53-78 3-28 (196)
373 PHA02244 ATPase-like protein 96.2 0.0076 1.6E-07 56.3 4.9 48 27-78 94-145 (383)
374 PRK13946 shikimate kinase; Pro 96.2 0.0044 9.6E-08 52.7 3.2 25 53-77 11-35 (184)
375 KOG0735 AAA+-type ATPase [Post 96.1 0.025 5.4E-07 56.5 8.5 92 30-141 668-771 (952)
376 PF12775 AAA_7: P-loop contain 96.1 0.015 3.2E-07 52.7 6.7 24 53-76 34-57 (272)
377 COG1224 TIP49 DNA helicase TIP 96.1 0.023 5.1E-07 52.2 7.7 56 26-81 36-94 (450)
378 COG2019 AdkA Archaeal adenylat 96.1 0.0059 1.3E-07 49.9 3.5 25 52-76 4-28 (189)
379 PRK14530 adenylate kinase; Pro 96.1 0.005 1.1E-07 53.9 3.4 23 54-76 5-27 (215)
380 PTZ00494 tuzin-like protein; P 96.1 0.04 8.6E-07 52.4 9.3 81 25-116 367-448 (664)
381 PF00158 Sigma54_activat: Sigm 96.1 0.0053 1.1E-07 51.4 3.3 45 31-75 1-45 (168)
382 PTZ00035 Rad51 protein; Provis 96.1 0.052 1.1E-06 50.8 10.3 38 39-76 105-142 (337)
383 TIGR00750 lao LAO/AO transport 96.1 0.015 3.3E-07 53.6 6.7 41 39-79 21-61 (300)
384 TIGR01650 PD_CobS cobaltochela 96.1 0.012 2.7E-07 54.1 6.0 50 27-80 43-92 (327)
385 PRK08972 fliI flagellum-specif 96.1 0.0096 2.1E-07 57.0 5.4 85 52-142 162-264 (444)
386 COG0703 AroK Shikimate kinase 96.1 0.0053 1.2E-07 50.9 3.2 27 54-80 4-30 (172)
387 TIGR03881 KaiC_arch_4 KaiC dom 96.1 0.015 3.3E-07 51.3 6.4 47 41-87 9-55 (229)
388 PRK13543 cytochrome c biogenes 96.1 0.041 8.9E-07 48.0 9.0 24 52-75 37-60 (214)
389 PRK14529 adenylate kinase; Pro 96.1 0.032 7E-07 48.8 8.2 91 55-149 3-96 (223)
390 PRK06995 flhF flagellar biosyn 96.1 0.069 1.5E-06 52.1 11.2 26 52-77 256-281 (484)
391 PRK13768 GTPase; Provisional 96.1 0.0098 2.1E-07 53.4 5.1 35 53-87 3-37 (253)
392 cd03217 ABC_FeS_Assembly ABC-t 96.1 0.014 3E-07 50.4 5.9 24 52-75 26-49 (200)
393 TIGR00764 lon_rel lon-related 96.1 0.013 2.9E-07 59.2 6.6 57 27-87 16-73 (608)
394 PF00560 LRR_1: Leucine Rich R 96.1 0.0017 3.7E-08 34.2 0.1 19 365-383 1-20 (22)
395 cd03287 ABC_MSH3_euk MutS3 hom 96.1 0.0072 1.6E-07 52.9 4.1 24 51-74 30-53 (222)
396 TIGR01313 therm_gnt_kin carboh 96.1 0.0042 9.1E-08 51.7 2.5 22 55-76 1-22 (163)
397 PRK14493 putative bifunctional 96.1 0.0088 1.9E-07 54.1 4.7 34 53-87 2-35 (274)
398 PF06414 Zeta_toxin: Zeta toxi 96.0 0.017 3.6E-07 49.8 6.3 103 49-161 12-122 (199)
399 PRK05973 replicative DNA helic 96.0 0.013 2.9E-07 51.7 5.7 36 52-87 64-99 (237)
400 PF06564 YhjQ: YhjQ protein; 96.0 0.014 2.9E-07 51.6 5.7 35 53-87 2-37 (243)
401 PLN02674 adenylate kinase 96.0 0.028 6.1E-07 49.8 7.7 25 52-76 31-55 (244)
402 TIGR02640 gas_vesic_GvpN gas v 96.0 0.0095 2E-07 53.8 4.9 36 38-77 11-46 (262)
403 TIGR03263 guanyl_kin guanylate 96.0 0.005 1.1E-07 52.1 2.9 24 53-76 2-25 (180)
404 PRK05057 aroK shikimate kinase 96.0 0.0059 1.3E-07 51.4 3.2 24 53-76 5-28 (172)
405 KOG0738 AAA+-type ATPase [Post 96.0 0.017 3.6E-07 53.7 6.2 72 2-78 190-271 (491)
406 PF13086 AAA_11: AAA domain; P 96.0 0.016 3.5E-07 50.9 6.2 36 37-76 6-41 (236)
407 COG0529 CysC Adenylylsulfate k 96.0 0.012 2.6E-07 48.6 4.8 37 50-86 21-57 (197)
408 PRK08699 DNA polymerase III su 96.0 0.083 1.8E-06 49.2 11.0 25 52-76 21-45 (325)
409 PF06309 Torsin: Torsin; Inte 96.0 0.015 3.3E-07 45.5 5.1 47 30-76 26-77 (127)
410 PLN03186 DNA repair protein RA 96.0 0.062 1.3E-06 50.3 10.0 49 39-87 110-164 (342)
411 TIGR00073 hypB hydrogenase acc 96.0 0.012 2.6E-07 51.1 5.1 30 49-78 19-48 (207)
412 cd01983 Fer4_NifH The Fer4_Nif 96.0 0.01 2.2E-07 44.1 4.0 25 54-78 1-25 (99)
413 PRK14527 adenylate kinase; Pro 96.0 0.007 1.5E-07 51.8 3.5 26 51-76 5-30 (191)
414 PRK05342 clpX ATP-dependent pr 96.0 0.011 2.3E-07 56.9 5.0 52 29-80 71-136 (412)
415 PF03193 DUF258: Protein of un 95.9 0.01 2.3E-07 48.9 4.3 36 35-75 23-58 (161)
416 PF07693 KAP_NTPase: KAP famil 95.9 0.031 6.7E-07 52.1 8.1 77 34-111 1-81 (325)
417 PF08477 Miro: Miro-like prote 95.9 0.0067 1.5E-07 47.3 3.1 21 55-75 2-22 (119)
418 PRK06964 DNA polymerase III su 95.9 0.12 2.5E-06 48.4 11.7 27 51-77 20-46 (342)
419 cd01672 TMPK Thymidine monopho 95.9 0.022 4.8E-07 48.8 6.6 26 54-79 2-27 (200)
420 cd03213 ABCG_EPDR ABCG transpo 95.9 0.027 5.9E-07 48.3 7.1 25 52-76 35-59 (194)
421 PRK14737 gmk guanylate kinase; 95.9 0.0062 1.3E-07 51.9 3.1 26 51-76 3-28 (186)
422 TIGR02239 recomb_RAD51 DNA rep 95.9 0.051 1.1E-06 50.4 9.2 49 39-87 83-137 (316)
423 TIGR00176 mobB molybdopterin-g 95.9 0.011 2.3E-07 48.9 4.2 33 54-86 1-34 (155)
424 cd03243 ABC_MutS_homologs The 95.9 0.0058 1.3E-07 52.8 2.8 22 53-74 30-51 (202)
425 cd01130 VirB11-like_ATPase Typ 95.9 0.0046 1E-07 52.7 2.1 88 53-148 26-118 (186)
426 TIGR01287 nifH nitrogenase iro 95.9 0.01 2.3E-07 53.9 4.5 27 53-79 1-27 (275)
427 PRK04182 cytidylate kinase; Pr 95.9 0.0073 1.6E-07 50.9 3.3 23 54-76 2-24 (180)
428 PLN02200 adenylate kinase fami 95.9 0.0083 1.8E-07 53.1 3.7 26 51-76 42-67 (234)
429 cd03233 ABC_PDR_domain1 The pl 95.9 0.054 1.2E-06 46.8 8.8 26 52-77 33-58 (202)
430 KOG4252 GTP-binding protein [S 95.9 0.03 6.4E-07 46.1 6.5 35 53-87 21-56 (246)
431 PRK03731 aroL shikimate kinase 95.9 0.0073 1.6E-07 50.7 3.2 23 54-76 4-26 (171)
432 PF13245 AAA_19: Part of AAA d 95.9 0.044 9.5E-07 39.1 6.7 22 53-74 11-32 (76)
433 COG0488 Uup ATPase components 95.9 0.029 6.3E-07 55.6 7.8 116 54-175 350-503 (530)
434 KOG3347 Predicted nucleotide k 95.9 0.007 1.5E-07 48.5 2.8 23 53-75 8-30 (176)
435 TIGR03305 alt_F1F0_F1_bet alte 95.9 0.02 4.4E-07 55.1 6.5 86 52-141 138-243 (449)
436 PRK10820 DNA-binding transcrip 95.9 0.052 1.1E-06 54.1 9.7 51 25-75 200-250 (520)
437 PRK06761 hypothetical protein; 95.9 0.011 2.4E-07 53.5 4.4 27 53-79 4-30 (282)
438 PRK00300 gmk guanylate kinase; 95.9 0.0073 1.6E-07 52.3 3.3 25 52-76 5-29 (205)
439 cd03116 MobB Molybdenum is an 95.9 0.015 3.2E-07 48.2 4.8 27 53-79 2-28 (159)
440 TIGR02868 CydC thiol reductant 95.8 0.029 6.2E-07 56.2 7.9 25 51-75 360-384 (529)
441 PRK08149 ATP synthase SpaL; Va 95.8 0.025 5.5E-07 54.2 7.0 84 52-141 151-252 (428)
442 cd00984 DnaB_C DnaB helicase C 95.8 0.094 2E-06 46.6 10.5 52 51-109 12-64 (242)
443 CHL00206 ycf2 Ycf2; Provisiona 95.8 0.048 1E-06 60.6 9.7 27 50-76 1628-1654(2281)
444 TIGR00041 DTMP_kinase thymidyl 95.8 0.028 6E-07 48.2 6.8 26 53-78 4-29 (195)
445 COG1124 DppF ABC-type dipeptid 95.8 0.0089 1.9E-07 52.1 3.6 22 53-74 34-55 (252)
446 TIGR03522 GldA_ABC_ATP gliding 95.8 0.055 1.2E-06 49.9 9.1 24 52-75 28-51 (301)
447 PRK13407 bchI magnesium chelat 95.8 0.0096 2.1E-07 55.4 4.0 50 25-76 4-53 (334)
448 PLN02348 phosphoribulokinase 95.8 0.011 2.3E-07 55.8 4.3 31 49-79 46-76 (395)
449 PRK04328 hypothetical protein; 95.8 0.021 4.5E-07 51.2 6.0 47 41-87 12-58 (249)
450 PRK06002 fliI flagellum-specif 95.8 0.02 4.3E-07 55.2 6.1 82 52-141 165-265 (450)
451 COG5635 Predicted NTPase (NACH 95.8 0.015 3.2E-07 61.3 5.8 114 52-169 222-349 (824)
452 PRK13230 nitrogenase reductase 95.8 0.013 2.9E-07 53.4 4.8 34 53-86 2-35 (279)
453 PRK11388 DNA-binding transcrip 95.8 0.026 5.6E-07 57.9 7.4 48 28-75 324-371 (638)
454 PF13521 AAA_28: AAA domain; P 95.8 0.0087 1.9E-07 49.8 3.3 21 55-75 2-22 (163)
455 TIGR02173 cyt_kin_arch cytidyl 95.8 0.0088 1.9E-07 50.0 3.3 23 54-76 2-24 (171)
456 PRK10078 ribose 1,5-bisphospho 95.8 0.0077 1.7E-07 51.3 3.0 23 54-76 4-26 (186)
457 COG2074 2-phosphoglycerate kin 95.8 0.018 3.9E-07 50.3 5.2 27 50-76 87-113 (299)
458 PF13504 LRR_7: Leucine rich r 95.8 0.0049 1.1E-07 30.1 1.0 17 364-380 1-17 (17)
459 cd02117 NifH_like This family 95.8 0.014 3E-07 50.9 4.6 27 53-79 1-27 (212)
460 KOG0058 Peptide exporter, ABC 95.8 0.016 3.4E-07 58.1 5.4 22 53-74 495-516 (716)
461 COG0396 sufC Cysteine desulfur 95.7 0.16 3.5E-06 44.0 10.8 78 121-200 153-240 (251)
462 COG4133 CcmA ABC-type transpor 95.7 0.092 2E-06 44.1 9.0 34 53-86 29-62 (209)
463 COG1763 MobB Molybdopterin-gua 95.7 0.014 3.1E-07 48.1 4.3 36 52-87 2-37 (161)
464 cd02034 CooC The accessory pro 95.7 0.019 4E-07 44.8 4.7 33 55-87 2-34 (116)
465 PRK08533 flagellar accessory p 95.7 0.016 3.4E-07 51.2 4.9 37 51-87 23-59 (230)
466 PRK09519 recA DNA recombinatio 95.7 0.049 1.1E-06 56.1 8.9 93 38-140 45-148 (790)
467 PRK04220 2-phosphoglycerate ki 95.7 0.029 6.2E-07 51.1 6.5 26 51-76 91-116 (301)
468 TIGR02533 type_II_gspE general 95.7 0.025 5.4E-07 55.7 6.6 113 38-166 231-344 (486)
469 PLN02318 phosphoribulokinase/u 95.7 0.014 3E-07 57.8 4.7 29 48-76 61-89 (656)
470 PRK08927 fliI flagellum-specif 95.7 0.041 8.9E-07 52.9 7.8 84 52-141 158-259 (442)
471 PRK14532 adenylate kinase; Pro 95.7 0.0088 1.9E-07 51.0 3.1 22 55-76 3-24 (188)
472 PF03029 ATP_bind_1: Conserved 95.7 0.013 2.8E-07 52.0 4.1 34 57-91 1-34 (238)
473 TIGR02788 VirB11 P-type DNA tr 95.7 0.012 2.5E-07 54.6 4.0 109 52-168 144-253 (308)
474 PRK10436 hypothetical protein; 95.7 0.028 6E-07 54.8 6.7 102 37-151 206-308 (462)
475 COG0194 Gmk Guanylate kinase [ 95.7 0.014 3.1E-07 48.7 4.1 25 52-76 4-28 (191)
476 PRK10875 recD exonuclease V su 95.7 0.082 1.8E-06 53.5 10.2 26 53-78 168-193 (615)
477 TIGR02236 recomb_radA DNA repa 95.7 0.05 1.1E-06 50.4 8.2 48 40-87 83-136 (310)
478 cd01428 ADK Adenylate kinase ( 95.7 0.0093 2E-07 51.0 3.1 22 55-76 2-23 (194)
479 cd02029 PRK_like Phosphoribulo 95.6 0.015 3.3E-07 51.8 4.4 34 54-87 1-34 (277)
480 TIGR00382 clpX endopeptidase C 95.6 0.017 3.7E-07 55.2 5.1 52 29-80 77-144 (413)
481 PRK14531 adenylate kinase; Pro 95.6 0.011 2.5E-07 50.2 3.5 23 54-76 4-26 (183)
482 PRK12338 hypothetical protein; 95.6 0.011 2.4E-07 54.3 3.6 25 52-76 4-28 (319)
483 COG0378 HypB Ni2+-binding GTPa 95.6 0.016 3.5E-07 48.8 4.2 35 52-86 13-47 (202)
484 cd03114 ArgK-like The function 95.6 0.017 3.7E-07 47.2 4.4 26 54-79 1-26 (148)
485 cd00820 PEPCK_HprK Phosphoenol 95.6 0.011 2.5E-07 45.0 3.1 22 52-73 15-36 (107)
486 KOG0651 26S proteasome regulat 95.6 0.034 7.4E-07 50.2 6.4 30 51-80 165-194 (388)
487 COG1419 FlhF Flagellar GTP-bin 95.6 0.23 5.1E-06 46.9 12.2 36 52-87 203-240 (407)
488 COG0464 SpoVK ATPases of the A 95.6 0.02 4.3E-07 56.8 5.6 31 50-80 274-304 (494)
489 PF00154 RecA: recA bacterial 95.6 0.06 1.3E-06 49.7 8.3 50 38-87 38-88 (322)
490 TIGR02782 TrbB_P P-type conjug 95.6 0.038 8.3E-07 50.8 7.1 88 53-148 133-222 (299)
491 PHA02530 pseT polynucleotide k 95.6 0.011 2.3E-07 54.6 3.5 24 53-76 3-26 (300)
492 TIGR02525 plasmid_TraJ plasmid 95.6 0.047 1E-06 51.6 7.8 105 53-165 150-256 (372)
493 cd02040 NifH NifH gene encodes 95.6 0.018 3.9E-07 52.2 4.8 35 53-87 2-36 (270)
494 PRK05800 cobU adenosylcobinami 95.6 0.056 1.2E-06 45.3 7.4 23 54-76 3-25 (170)
495 TIGR01448 recD_rel helicase, p 95.6 0.1 2.2E-06 54.0 10.8 35 53-87 339-374 (720)
496 KOG2035 Replication factor C, 95.6 0.22 4.9E-06 44.4 11.1 46 29-76 13-58 (351)
497 smart00072 GuKc Guanylate kina 95.5 0.011 2.4E-07 50.3 3.1 29 53-81 3-31 (184)
498 cd01134 V_A-ATPase_A V/A-type 95.5 0.056 1.2E-06 50.2 7.8 49 52-106 157-205 (369)
499 PF08298 AAA_PrkA: PrkA AAA do 95.5 0.016 3.4E-07 53.7 4.2 52 28-79 60-115 (358)
500 PF05970 PIF1: PIF1-like helic 95.5 0.023 5E-07 53.9 5.6 36 51-86 21-56 (364)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-57 Score=459.46 Aligned_cols=342 Identities=26% Similarity=0.363 Sum_probs=285.6
Q ss_pred cccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH---hhCCCCceEEEeeccccccCCCChHHHHHHHHH
Q 044214 32 VGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDK---ISGDFDGSCFLENVREESQIPGGLSCLRQKLLS 108 (385)
Q Consensus 32 vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~ 108 (385)
||.+..++++.+.|..++ ..+++|+||||+||||||++++++ ++.+|+.++|+. +|+. ++...++.+|+.
T Consensus 161 VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~-f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKE-FTTRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----Eccc-ccHHhHHHHHHH
Confidence 999999999999999543 389999999999999999999983 678999999999 6666 999999999999
Q ss_pred HHhCCCC---C---CchHHHHHHHhCCceEEEEEeCCCChhhhhHhhccCCCCCCCcEEEEEeccHHHHhh-ccc-----
Q 044214 109 NLLKDKN---V---MPYIDLNFRRLGHMKVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRN-WRV----- 176 (385)
Q Consensus 109 ~l~~~~~---~---~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~~-~~~----- 176 (385)
.++.... + .+.+..+.+.|++||++|||||||+..+|+.+..+++....||+|++|||+..|+.. +++
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIE 313 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccc
Confidence 8877444 1 177888999999999999999999999999999999988889999999999999988 554
Q ss_pred ---------------eecccC-CCCCCchHHHHHHHHHhCCCccchhHH-----------hHHHHHHHhhhc-------c
Q 044214 177 ---------------NAFKRN-HPDVGNEKLSSNVMKYAQGVPLALKVL-----------VWESAISKLQRI-------L 222 (385)
Q Consensus 177 ---------------~~~~~~-~~~~~~~~~~~~i~~~~~GlPLal~~~-----------~w~~~l~~l~~~-------~ 222 (385)
.+|... ...+..+++|++++++|+|+|||+.++ +|+.+.+.+... .
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 333332 222347999999999999999999999 799999988664 1
Q ss_pred CcccchhhhhccccCchhhhhhhhhccccCCC--ccHHHHHHHHHHcCCc------------hhhhHHHhhcCCceeEec
Q 044214 223 HPSILEVLKISYDSLEDKEKNIFLDVACFFQG--EHVDPVMKFFNASGFY------------PEIRISVLVDKPLIAICS 288 (385)
Q Consensus 223 ~~~~~~~l~~sy~~L~~~~k~~~~~la~fp~~--~~~~~l~~~~~~~g~~------------~~~~l~~L~~~sLi~~~~ 288 (385)
.+.+..++..||+.||++.|.||+|||.||++ ++.+.|+.+|+++|++ +..++.+|++++|+....
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 25688999999999999999999999999999 7899999999999976 345799999999999764
Q ss_pred C----CcEEeCHHHHHHHHHHHh-----hcc--CCCCCccc-----------------------------cCCeeEEEee
Q 044214 289 Y----KKIRMRDLLQELGGEIVR-----KES--INPGNRKQ-----------------------------GQKIEDICLD 328 (385)
Q Consensus 289 ~----~~~~mH~lv~~~a~~~~~-----~e~--~~~~~~~~-----------------------------~~~~r~l~l~ 328 (385)
. ..|.|||+||++|..++. +++ ...+...+ ..+++++.+.
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~ 553 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQ 553 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEe
Confidence 2 469999999999999999 443 11110000 2234444444
Q ss_pred cCCceeeeeCccccCCCCCCcEEEecCc----ccCCCCC--CCeeEEEcCCCCCCCCC
Q 044214 329 MSKVIEICLNTSTFTKMPKLRFLKFYSS----SFNGENK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~LrvL~l~~~----~lp~~i~--~~LryL~l~~~~~~~lP 380 (385)
........++..+|.+|+.||||||++| +||.+|+ .|||||++++|.++.||
T Consensus 554 ~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP 611 (889)
T KOG4658|consen 554 RNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLP 611 (889)
T ss_pred ecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccc
Confidence 3321134567778999999999999977 8999999 99999999999999999
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.4e-53 Score=454.34 Aligned_cols=381 Identities=35% Similarity=0.570 Sum_probs=325.2
Q ss_pred CcHhHHHHHHHHHHHHhhccCCCCCCCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 1 KRESELINEVVNHILKRLDEVFRPRDNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 1 ~~e~~~i~~i~~~v~~~l~~~~~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
++|+++|++|+++|++++.. +++...+.+|||+++++++..+|..+.+++++|+|+||||+||||||+++|+++..+|
T Consensus 158 ~~E~~~i~~Iv~~v~~~l~~--~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F 235 (1153)
T PLN03210 158 PNEAKMIEEIANDVLGKLNL--TPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQF 235 (1153)
T ss_pred CCHHHHHHHHHHHHHHhhcc--ccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcC
Confidence 36999999999999999998 8888889999999999999999987777899999999999999999999999999999
Q ss_pred CceEEEeec--ccc---cc-----CCCChHHHHHHHHHHHhCCCC-CCchHHHHHHHhCCceEEEEEeCCCChhhhhHhh
Q 044214 81 DGSCFLENV--REE---SQ-----IPGGLSCLRQKLLSNLLKDKN-VMPYIDLNFRRLGHMKVLIVFDDVTCFSQLESLM 149 (385)
Q Consensus 81 ~~~~w~~~~--~~~---~~-----~~~~~~~l~~~ll~~l~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~ 149 (385)
++.+|+... ... .. .......++.+++..+..... .......+++.+.++|+||||||||+..+|+.+.
T Consensus 236 ~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~ 315 (1153)
T PLN03210 236 QSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALA 315 (1153)
T ss_pred CeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHH
Confidence 999888531 110 00 001123455666666654432 2233467888999999999999999999999998
Q ss_pred ccCCCCCCCcEEEEEeccHHHHhhccc--------------------eecccCCCCCCchHHHHHHHHHhCCCccchhHH
Q 044214 150 GSLDWLTPVSRIILTTRNKQVLRNWRV--------------------NAFKRNHPDVGNEKLSSNVMKYAQGVPLALKVL 209 (385)
Q Consensus 150 ~~~~~~~~gs~ilvTtR~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 209 (385)
....+.++|++||||||++.++..+++ ++|....+++.+.+++++|+++|+|+||||+++
T Consensus 316 ~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vl 395 (1153)
T PLN03210 316 GQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVL 395 (1153)
T ss_pred hhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 877788899999999999998865432 667666666678899999999999999999998
Q ss_pred ----------hHHHHHHHhhhccCcccchhhhhccccCch-hhhhhhhhccccCCCccHHHHHHHHHHcCCchhhhHHHh
Q 044214 210 ----------VWESAISKLQRILHPSILEVLKISYDSLED-KEKNIFLDVACFFQGEHVDPVMKFFNASGFYPEIRISVL 278 (385)
Q Consensus 210 ----------~w~~~l~~l~~~~~~~~~~~l~~sy~~L~~-~~k~~~~~la~fp~~~~~~~l~~~~~~~g~~~~~~l~~L 278 (385)
+|+..+++++.....++..++++||+.|++ .+|.||+++|+|+.+.+.+.+..++...++.++..++.|
T Consensus 396 gs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L 475 (1153)
T PLN03210 396 GSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNL 475 (1153)
T ss_pred HHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHH
Confidence 899999999988788899999999999987 599999999999999888888888888888888889999
Q ss_pred hcCCceeEecCCcEEeCHHHHHHHHHHHhhccCCCCCccc----------------cCCeeEEEeecCCceeeeeCcccc
Q 044214 279 VDKPLIAICSYKKIRMRDLLQELGGEIVRKESINPGNRKQ----------------GQKIEDICLDMSKVIEICLNTSTF 342 (385)
Q Consensus 279 ~~~sLi~~~~~~~~~mH~lv~~~a~~~~~~e~~~~~~~~~----------------~~~~r~l~l~~~~~~~~~~~~~~~ 342 (385)
+++|||+.. .+++.|||++|++|+++++++..++++++| +.++++|+++.+......+....|
T Consensus 476 ~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF 554 (1153)
T PLN03210 476 VDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAF 554 (1153)
T ss_pred HhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHH
Confidence 999999987 678999999999999999998777888876 567899999999887888999999
Q ss_pred CCCCCCcEEEecCc----------ccCCCCC---CCeeEEEcCCCCCCCCC-CCCC
Q 044214 343 TKMPKLRFLKFYSS----------SFNGENK---CKISYLQDPGFAGVKLN-NFGI 384 (385)
Q Consensus 343 ~~~~~LrvL~l~~~----------~lp~~i~---~~LryL~l~~~~~~~lP-~~~~ 384 (385)
.+|++|++|.+.+. .+|+++. .+||+|+|.+++++.+| +|.+
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~ 610 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRP 610 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCc
Confidence 99999999999642 5888887 68999999999999999 6654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=8.3e-39 Score=293.94 Aligned_cols=234 Identities=30% Similarity=0.450 Sum_probs=184.4
Q ss_pred cchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH--hhCCCCceEEEeeccccccCCCChHHHHHHHHHHHh
Q 044214 34 VESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDK--ISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLL 111 (385)
Q Consensus 34 R~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~--~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~ 111 (385)
||.++++|.+.|...+++.++|+|+||||+||||||.+++++ ++.+|+.++|+. .+.. .+...++..++..+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~-~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKN-PSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES--SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----cccc-ccccccccccccccc
Confidence 789999999999975588999999999999999999999987 889999999998 3333 666889999999998
Q ss_pred CCCCC-----C--chHHHHHHHhCCceEEEEEeCCCChhhhhHhhccCCCCCCCcEEEEEeccHHHHhhccc--------
Q 044214 112 KDKNV-----M--PYIDLNFRRLGHMKVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWRV-------- 176 (385)
Q Consensus 112 ~~~~~-----~--~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~~~~~-------- 176 (385)
....+ . +....+.+.|+++++||||||||+...|+.+...++....|++||||||+..++.....
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 77321 1 77889999999999999999999999998888777766779999999999987765441
Q ss_pred -------------eecccC-CCCCCchHHHHHHHHHhCCCccchhHH-----------hHHHHHHHhhhcc------Ccc
Q 044214 177 -------------NAFKRN-HPDVGNEKLSSNVMKYAQGVPLALKVL-----------VWESAISKLQRIL------HPS 225 (385)
Q Consensus 177 -------------~~~~~~-~~~~~~~~~~~~i~~~~~GlPLal~~~-----------~w~~~l~~l~~~~------~~~ 225 (385)
.++... ......++.+++|++.|+|+||||+++ +|...++.+.... ...
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 212222 223456788999999999999999998 7988888866543 356
Q ss_pred cchhhhhccccCchhhhhhhhhccccCCC--ccHHHHHHHHHHcCCchh
Q 044214 226 ILEVLKISYDSLEDKEKNIFLDVACFFQG--EHVDPVMKFFNASGFYPE 272 (385)
Q Consensus 226 ~~~~l~~sy~~L~~~~k~~~~~la~fp~~--~~~~~l~~~~~~~g~~~~ 272 (385)
+..++..||+.|+++.|.||.+||+||.+ ++.+.++++|.++|++..
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 89999999999999999999999999988 789999999999998754
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.65 E-value=9e-15 Score=155.07 Aligned_cols=267 Identities=14% Similarity=0.143 Sum_probs=168.7
Q ss_pred CCCCCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHH
Q 044214 23 RPRDNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCL 102 (385)
Q Consensus 23 ~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l 102 (385)
.||..++.+|-|+..++.|.. ....+++.|+|++|.||||++.++.++ ++.++|++ ..... .+...+
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~-l~~~d---~~~~~f 74 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYS-LDESD---NQPERF 74 (903)
T ss_pred CCCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEe-cCccc---CCHHHH
Confidence 567788899999977777653 335679999999999999999998864 23688997 43221 445566
Q ss_pred HHHHHHHHhCCCCC--------------C---chHHHHHHHhC--CceEEEEEeCCCCh---h---hhhHhhccCCCCCC
Q 044214 103 RQKLLSNLLKDKNV--------------M---PYIDLNFRRLG--HMKVLIVFDDVTCF---S---QLESLMGSLDWLTP 157 (385)
Q Consensus 103 ~~~ll~~l~~~~~~--------------~---~~~~~l~~~l~--~k~~LlVlDdv~~~---~---~~~~l~~~~~~~~~ 157 (385)
+..++..+...... . .....+...+. +.+++|||||+... . .+..+.... .+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~---~~ 151 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ---PE 151 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC---CC
Confidence 66666666421110 0 11222333332 68999999999532 1 233333332 35
Q ss_pred CcEEEEEeccHHHH--hhc---------cce--ecc---------cCCCCCCchHHHHHHHHHhCCCccchhHH--hHHH
Q 044214 158 VSRIILTTRNKQVL--RNW---------RVN--AFK---------RNHPDVGNEKLSSNVMKYAQGVPLALKVL--VWES 213 (385)
Q Consensus 158 gs~ilvTtR~~~~~--~~~---------~~~--~~~---------~~~~~~~~~~~~~~i~~~~~GlPLal~~~--~w~~ 213 (385)
+.++|||||...-. ... +.. .|. .........+.+.++++.|+|+|+++..+ .+..
T Consensus 152 ~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 152 NLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred CeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 67888999974211 010 000 121 11222234567889999999999999876 2111
Q ss_pred H-------HHHhhhccCcccchhhhhc-cccCchhhhhhhhhccccCCCccHHHHHHHHHHcCCchhhhHHHhhcCCcee
Q 044214 214 A-------ISKLQRILHPSILEVLKIS-YDSLEDKEKNIFLDVACFFQGEHVDPVMKFFNASGFYPEIRISVLVDKPLIA 285 (385)
Q Consensus 214 ~-------l~~l~~~~~~~~~~~l~~s-y~~L~~~~k~~~~~la~fp~~~~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~ 285 (385)
. ...+.......+...+.-. ++.||++.+.++...|+++ .++.+.+..+... -.....+++|.+.+++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~--~~~~~~L~~l~~~~l~~ 308 (903)
T PRK04841 232 NNSSLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE--ENGQMRLEELERQGLFI 308 (903)
T ss_pred CCCchhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC--CcHHHHHHHHHHCCCee
Confidence 0 0111111123455554433 8999999999999999986 6776665555432 23567899999999965
Q ss_pred E-ec-C-CcEEeCHHHHHHHHHHHhh
Q 044214 286 I-CS-Y-KKIRMRDLLQELGGEIVRK 308 (385)
Q Consensus 286 ~-~~-~-~~~~mH~lv~~~a~~~~~~ 308 (385)
. .+ + .+|+.|+++++++++....
T Consensus 309 ~~~~~~~~~yr~H~L~r~~l~~~l~~ 334 (903)
T PRK04841 309 QRMDDSGEWFRYHPLFASFLRHRCQW 334 (903)
T ss_pred EeecCCCCEEehhHHHHHHHHHHHHh
Confidence 3 32 2 3699999999999987643
No 5
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.43 E-value=5.9e-12 Score=124.47 Aligned_cols=270 Identities=13% Similarity=0.134 Sum_probs=170.0
Q ss_pred CCCCCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHH
Q 044214 23 RPRDNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCL 102 (385)
Q Consensus 23 ~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l 102 (385)
.+|..+...|-|...++.|.. ..+.+.+.|..++|.|||||+.+... ....-..+.|++.-.+. .+...+
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~d----ndp~rF 82 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESD----NDPARF 82 (894)
T ss_pred CCCCCcccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCcc----CCHHHH
Confidence 567778888989877776654 44678999999999999999999988 44455678999833222 667777
Q ss_pred HHHHHHHHhCCCCCC-----------------chHHHHHHHhC--CceEEEEEeCCC---Ch---hhhhHhhccCCCCCC
Q 044214 103 RQKLLSNLLKDKNVM-----------------PYIDLNFRRLG--HMKVLIVFDDVT---CF---SQLESLMGSLDWLTP 157 (385)
Q Consensus 103 ~~~ll~~l~~~~~~~-----------------~~~~~l~~~l~--~k~~LlVlDdv~---~~---~~~~~l~~~~~~~~~ 157 (385)
...++..+....+.. .....+..-+. .+++.+||||.. +. ..++.+....| +
T Consensus 83 ~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P---~ 159 (894)
T COG2909 83 LSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP---E 159 (894)
T ss_pred HHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC---C
Confidence 788877776443321 22333333333 478999999984 22 23455554443 6
Q ss_pred CcEEEEEeccHHHHhhccc---------------------eec-ccCCCCCCchHHHHHHHHHhCCCccchhHH-hHH--
Q 044214 158 VSRIILTTRNKQVLRNWRV---------------------NAF-KRNHPDVGNEKLSSNVMKYAQGVPLALKVL-VWE-- 212 (385)
Q Consensus 158 gs~ilvTtR~~~~~~~~~~---------------------~~~-~~~~~~~~~~~~~~~i~~~~~GlPLal~~~-~w~-- 212 (385)
+-.+++|||+..-...... ..| ......+....-++.+.+.++|.+-|+.++ -|-
T Consensus 160 ~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 160 NLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred CeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 7889999998633222111 111 122223344555677777777777777765 111
Q ss_pred -----HHHHHhhhccCcccc-hhhhhccccCchhhhhhhhhccccCCCccHHHHHHHHHHcCCchhhhHHHhhcCCceeE
Q 044214 213 -----SAISKLQRILHPSIL-EVLKISYDSLEDKEKNIFLDVACFFQGEHVDPVMKFFNASGFYPEIRISVLVDKPLIAI 286 (385)
Q Consensus 213 -----~~l~~l~~~~~~~~~-~~l~~sy~~L~~~~k~~~~~la~fp~~~~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~~ 286 (385)
.....+... .+.+. -...--++.||++.|..+..+|+++. +.-+...++...+ .....+++|.+++|+-.
T Consensus 240 ~~~~~q~~~~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~~--ng~amLe~L~~~gLFl~ 315 (894)
T COG2909 240 NTSAEQSLRGLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGEE--NGQAMLEELERRGLFLQ 315 (894)
T ss_pred CCcHHHHhhhccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcCC--cHHHHHHHHHhCCCcee
Confidence 111111100 01121 22334578999999999999999954 3333333332221 24456999999999773
Q ss_pred --ec-CCcEEeCHHHHHHHHHHHhhc
Q 044214 287 --CS-YKKIRMRDLLQELGGEIVRKE 309 (385)
Q Consensus 287 --~~-~~~~~mH~lv~~~a~~~~~~e 309 (385)
++ .+.|+.|.+..+|.+.....+
T Consensus 316 ~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 316 RLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred eecCCCceeehhHHHHHHHHhhhccc
Confidence 22 567999999999999877664
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=2.9e-11 Score=116.18 Aligned_cols=259 Identities=16% Similarity=0.163 Sum_probs=144.2
Q ss_pred CCCCCCCCccccchhHHHHHHhhcCC--CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC--ceEEEeeccccccCCCC
Q 044214 23 RPRDNKNQLVGVESTVEEIESLLGVE--SKGVYALGIWGIGGIGKTTIARAIFDKISGDFD--GSCFLENVREESQIPGG 98 (385)
Q Consensus 23 ~~~~~~~~~vGR~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~w~~~~~~~~~~~~~ 98 (385)
.+...|+.|+||++++++|...+... ......+.|+|++|+|||++++.+++++..... ..+++. .... .+
T Consensus 24 ~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~~~~----~~ 98 (394)
T PRK00411 24 EPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-CQID----RT 98 (394)
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-CCcC----CC
Confidence 55567788999999999999988531 234456789999999999999999998765542 233333 2222 45
Q ss_pred hHHHHHHHHHHHhCC-CC--CC---chHHHHHHHhC--CceEEEEEeCCCChh------hhhHhhccCCCCCCCcE--EE
Q 044214 99 LSCLRQKLLSNLLKD-KN--VM---PYIDLNFRRLG--HMKVLIVFDDVTCFS------QLESLMGSLDWLTPVSR--II 162 (385)
Q Consensus 99 ~~~l~~~ll~~l~~~-~~--~~---~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~--il 162 (385)
...++..++.++... .+ .. +....+.+.+. +++.+||||+++... .+..+....... ++++ +|
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI 177 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVI 177 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEE
Confidence 667888888888652 21 11 44555566654 467999999997542 344444332211 2323 56
Q ss_pred EEeccHHHHhhccc--------------------------eecccC-CCCCCchHHHHHHHHHh----CCCccchhHH--
Q 044214 163 LTTRNKQVLRNWRV--------------------------NAFKRN-HPDVGNEKLSSNVMKYA----QGVPLALKVL-- 209 (385)
Q Consensus 163 vTtR~~~~~~~~~~--------------------------~~~~~~-~~~~~~~~~~~~i~~~~----~GlPLal~~~-- 209 (385)
.++...++...... ..+... ......++.++.+++.+ |..+.|+.++
T Consensus 178 ~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~ 257 (394)
T PRK00411 178 GISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRR 257 (394)
T ss_pred EEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 66554433222110 000000 01112234445555554 3455666654
Q ss_pred hHHHHHHHhhh-ccCccc--------chhhhhccccCchhhhhhhhhccccC----CCccHHHHHHH----HHHcCCc--
Q 044214 210 VWESAISKLQR-ILHPSI--------LEVLKISYDSLEDKEKNIFLDVACFF----QGEHVDPVMKF----FNASGFY-- 270 (385)
Q Consensus 210 ~w~~~l~~l~~-~~~~~~--------~~~l~~sy~~L~~~~k~~~~~la~fp----~~~~~~~l~~~----~~~~g~~-- 270 (385)
.+.....+-.. ...+.+ ...+.-.+..||.++|..+..++... ..+....+... ....|..
T Consensus 258 a~~~a~~~~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~ 337 (394)
T PRK00411 258 AGLIAEREGSRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPR 337 (394)
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcC
Confidence 11111111000 000111 22334568899999998887766442 22444444332 1222332
Q ss_pred ----hhhhHHHhhcCCceeEe
Q 044214 271 ----PEIRISVLVDKPLIAIC 287 (385)
Q Consensus 271 ----~~~~l~~L~~~sLi~~~ 287 (385)
...+++.|.+.|||+..
T Consensus 338 ~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 338 THTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cHHHHHHHHHHHHhcCCeEEE
Confidence 23579999999999964
No 7
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.35 E-value=4.8e-12 Score=130.83 Aligned_cols=275 Identities=15% Similarity=0.242 Sum_probs=159.1
Q ss_pred CccccchhHHHHHHhhcC-CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEee----ccccccCCCChHHHHH
Q 044214 30 QLVGVESTVEEIESLLGV-ESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLEN----VREESQIPGGLSCLRQ 104 (385)
Q Consensus 30 ~~vGR~~~l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~----~~~~~~~~~~~~~l~~ 104 (385)
.++||+.+++.|...+.. ..+...++.+.|.+|||||+|+++|.+.+.+.+. .++.. ....+.- ..+.+.++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~--~~i~~~f~q~~~~ipl-~~lvq~~r 77 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRG--YFIKGKFDQFERNIPL-SPLVQAFR 77 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccce--eeeHhhcccccCCCch-HHHHHHHH
Confidence 379999999999998875 3345679999999999999999999997755421 11110 1111111 23333344
Q ss_pred HHHHHHhCCCCCC--------------------------------------------------chHHHHHHHh-CCceEE
Q 044214 105 KLLSNLLKDKNVM--------------------------------------------------PYIDLNFRRL-GHMKVL 133 (385)
Q Consensus 105 ~ll~~l~~~~~~~--------------------------------------------------~~~~~l~~~l-~~k~~L 133 (385)
+++.++....... .....+.... +.++.+
T Consensus 78 ~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plV 157 (849)
T COG3899 78 DLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLV 157 (849)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeE
Confidence 4444332211100 0111122222 346999
Q ss_pred EEEeCC-CChhh----hhHhhccCCC-CCCCcEEEE--EeccH--HHHhhc-cc------------------eecccCCC
Q 044214 134 IVFDDV-TCFSQ----LESLMGSLDW-LTPVSRIIL--TTRNK--QVLRNW-RV------------------NAFKRNHP 184 (385)
Q Consensus 134 lVlDdv-~~~~~----~~~l~~~~~~-~~~gs~ilv--TtR~~--~~~~~~-~~------------------~~~~~~~~ 184 (385)
+|+||+ |-... ++.++....- .-....|.. |.+.. .+.... .. ..+. +.
T Consensus 158 i~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~--~~ 235 (849)
T COG3899 158 IVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLG--CT 235 (849)
T ss_pred EEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhC--Cc
Confidence 999999 64433 2333322210 000112222 22211 000000 00 1111 11
Q ss_pred CCCchHHHHHHHHHhCCCccchhHH-----------------hHHHHHHHhhhcc-CcccchhhhhccccCchhhhhhhh
Q 044214 185 DVGNEKLSSNVMKYAQGVPLALKVL-----------------VWESAISKLQRIL-HPSILEVLKISYDSLEDKEKNIFL 246 (385)
Q Consensus 185 ~~~~~~~~~~i~~~~~GlPLal~~~-----------------~w~~~l~~l~~~~-~~~~~~~l~~sy~~L~~~~k~~~~ 246 (385)
.....+..+.|+++..|+|+.+..+ .|......+.... .+++.+.+....+.||...|.++.
T Consensus 236 ~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 236 KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 2345678999999999999999987 3333333322211 133555788899999999999999
Q ss_pred hccccCCCccHHHHHHHHHHcCCchhhhHHHhhcCCceeEec--------CC---cEEeCHHHHHHHHHHHhhc
Q 044214 247 DVACFFQGEHVDPVMKFFNASGFYPEIRISVLVDKPLIAICS--------YK---KIRMRDLLQELGGEIVRKE 309 (385)
Q Consensus 247 ~la~fp~~~~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~~~~--------~~---~~~mH~lv~~~a~~~~~~e 309 (385)
..||+...|+.+.|..++..........+......++|.+.. .. +-+.|+++|+.|-....++
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~ 389 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES 389 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh
Confidence 999999999999999998864443333444445555555421 11 2278999999997654443
No 8
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.31 E-value=1.3e-11 Score=114.40 Aligned_cols=248 Identities=16% Similarity=0.182 Sum_probs=136.2
Q ss_pred CCccccchhHHHHHHhhcC---CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHH
Q 044214 29 NQLVGVESTVEEIESLLGV---ESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQK 105 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ 105 (385)
.+|||+++.+++|..++.. .......+.++|++|+|||+||+.+++.+...+. ... .... .....+ ..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~-~~~~----~~~~~l-~~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---ITS-GPAL----EKPGDL-AA 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Eec-cchh----cCchhH-HH
Confidence 4699999999999988862 1233556889999999999999999998754321 111 1111 111111 11
Q ss_pred HHHHHhCCCC----CC-----chHHHHHHHhCCceEEEEEeCCCChhhhhHhhccCCCCCCCcEEEEEeccHHHH----h
Q 044214 106 LLSNLLKDKN----VM-----PYIDLNFRRLGHMKVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVL----R 172 (385)
Q Consensus 106 ll~~l~~~~~----~~-----~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~----~ 172 (385)
.+..+....- +. ...+.+...+.+.+..+|+|+..+...+... ..+.+-|..||+...+. .
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHh
Confidence 1222211110 00 1222333334444444444443333322111 11244455666653221 1
Q ss_pred hccc-eeccc---------------CCCCCCchHHHHHHHHHhCCCccchhHH---hHHHHHHHhhhc-cC----cccch
Q 044214 173 NWRV-NAFKR---------------NHPDVGNEKLSSNVMKYAQGVPLALKVL---VWESAISKLQRI-LH----PSILE 228 (385)
Q Consensus 173 ~~~~-~~~~~---------------~~~~~~~~~~~~~i~~~~~GlPLal~~~---~w~~~l~~l~~~-~~----~~~~~ 228 (385)
.+.. ..|.. .......++.+..|++.|+|.|-.+..+ .|.... ..... .. .....
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~-~~~~~~it~~~v~~~l~ 227 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQ-VRGQKIINRDIALKALE 227 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHH-HcCCCCcCHHHHHHHHH
Confidence 2211 00100 1112234567889999999999766543 221110 01110 00 11222
Q ss_pred hhhhccccCchhhhhhhh-hccccCCC-ccHHHHHHHHHHcCCchhhhHH-HhhcCCceeEecCCcE
Q 044214 229 VLKISYDSLEDKEKNIFL-DVACFFQG-EHVDPVMKFFNASGFYPEIRIS-VLVDKPLIAICSYKKI 292 (385)
Q Consensus 229 ~l~~sy~~L~~~~k~~~~-~la~fp~~-~~~~~l~~~~~~~g~~~~~~l~-~L~~~sLi~~~~~~~~ 292 (385)
.+...|..|++..+..+. .++.+..+ +..+.+...+..+....+..++ .|++++||+....|++
T Consensus 228 ~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~~ 294 (305)
T TIGR00635 228 MLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGRI 294 (305)
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchhh
Confidence 356778899998888777 44666544 7888888888887777888888 6999999986655553
No 9
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.30 E-value=2.8e-11 Score=113.08 Aligned_cols=239 Identities=18% Similarity=0.215 Sum_probs=136.2
Q ss_pred CCCCCccccchhHHHHHHhhcC---CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHH
Q 044214 26 DNKNQLVGVESTVEEIESLLGV---ESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCL 102 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l 102 (385)
..-.+|+|+++.++.+..++.. .......+.|+|++|+|||+||+.+++.+...+. +.. .... .. ...
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~----~~-~~~ 92 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPAL----EK-PGD 92 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cccc----cC-hHH
Confidence 3557899999999999887752 2334567889999999999999999998754321 111 1111 11 111
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHhCCceEEEEEeCCCChh--hhhHhhccCC-------------------CCCCCcEE
Q 044214 103 RQKLLSNLLKDKNVMPYIDLNFRRLGHMKVLIVFDDVTCFS--QLESLMGSLD-------------------WLTPVSRI 161 (385)
Q Consensus 103 ~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~-------------------~~~~gs~i 161 (385)
+..++..+ ++..+|++|+++... ..+.+...+. ...+.+-|
T Consensus 93 l~~~l~~l------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li 154 (328)
T PRK00080 93 LAAILTNL------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLI 154 (328)
T ss_pred HHHHHHhc------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEE
Confidence 11222221 123456666664211 1111111000 00123445
Q ss_pred EEEeccHHHH----hhccc-------------eecc---cCCCCCCchHHHHHHHHHhCCCccchhHH---hHHHHHHH-
Q 044214 162 ILTTRNKQVL----RNWRV-------------NAFK---RNHPDVGNEKLSSNVMKYAQGVPLALKVL---VWESAISK- 217 (385)
Q Consensus 162 lvTtR~~~~~----~~~~~-------------~~~~---~~~~~~~~~~~~~~i~~~~~GlPLal~~~---~w~~~l~~- 217 (385)
..|++...+. ..++. ..+. ........++.+..|++.|+|.|-.+..+ .|......
T Consensus 155 ~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~ 234 (328)
T PRK00080 155 GATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKG 234 (328)
T ss_pred eecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC
Confidence 5666643221 12211 0000 01112234567899999999999755544 22111110
Q ss_pred ---hhhccCcccchhhhhccccCchhhhhhhh-hccccCCC-ccHHHHHHHHHHcCCchhhhHH-HhhcCCceeEecCCc
Q 044214 218 ---LQRILHPSILEVLKISYDSLEDKEKNIFL-DVACFFQG-EHVDPVMKFFNASGFYPEIRIS-VLVDKPLIAICSYKK 291 (385)
Q Consensus 218 ---l~~~~~~~~~~~l~~sy~~L~~~~k~~~~-~la~fp~~-~~~~~l~~~~~~~g~~~~~~l~-~L~~~sLi~~~~~~~ 291 (385)
+....-......+...+..|++..+..+. .+..|+.+ +..+.+...+..+....++.++ .|++.+||+....|+
T Consensus 235 ~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~gr 314 (328)
T PRK00080 235 DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRGR 314 (328)
T ss_pred CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCCchH
Confidence 00000022334567778899998888886 66777654 8889998888887777787888 999999998665554
No 10
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.30 E-value=5.6e-10 Score=106.11 Aligned_cols=115 Identities=16% Similarity=0.272 Sum_probs=78.5
Q ss_pred CCCCCCCCccccchhHHHHHHhhcC--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC------ceEEEeecccccc
Q 044214 23 RPRDNKNQLVGVESTVEEIESLLGV--ESKGVYALGIWGIGGIGKTTIARAIFDKISGDFD------GSCFLENVREESQ 94 (385)
Q Consensus 23 ~~~~~~~~~vGR~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~w~~~~~~~~~ 94 (385)
.+...|+.++||++++++|...|.. .......+.|+|++|+|||++++.+++++.+... ..+|+. ....
T Consensus 9 ~~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in-~~~~-- 85 (365)
T TIGR02928 9 EPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN-CQIL-- 85 (365)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE-CCCC--
Confidence 4455567899999999999998863 2234457899999999999999999987653322 234444 2222
Q ss_pred CCCChHHHHHHHHHHHhC---CCC--CC---chHHHHHHHhC--CceEEEEEeCCCCh
Q 044214 95 IPGGLSCLRQKLLSNLLK---DKN--VM---PYIDLNFRRLG--HMKVLIVFDDVTCF 142 (385)
Q Consensus 95 ~~~~~~~l~~~ll~~l~~---~~~--~~---~~~~~l~~~l~--~k~~LlVlDdv~~~ 142 (385)
.+...++..++.++.. ..+ .. +....+.+.+. +++++||||+++..
T Consensus 86 --~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 86 --DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred --CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 4556788888888742 111 11 33455555553 56899999999765
No 11
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.10 E-value=5.8e-11 Score=105.29 Aligned_cols=55 Identities=18% Similarity=0.370 Sum_probs=40.9
Q ss_pred ccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 31 LVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 31 ~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
|+||+.++++|.+++.. +..+.+.|+|+.|+|||+|++++.+..++.-..++|+.
T Consensus 1 F~gR~~el~~l~~~l~~--~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~ 55 (234)
T PF01637_consen 1 FFGREKELEKLKELLES--GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYID 55 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHC
T ss_pred CCCHHHHHHHHHHHHHh--hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEe
Confidence 79999999999999984 34568999999999999999999998754333444444
No 12
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.09 E-value=5e-09 Score=95.22 Aligned_cols=151 Identities=16% Similarity=0.156 Sum_probs=86.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCC---chHHHHHHH--
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVM---PYIDLNFRR-- 126 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~---~~~~~l~~~-- 126 (385)
...+.|+|++|+||||+++.+++.+...-...+|+. ... .+..+++..++..++...... .....+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~-~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTR-VDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCC-CCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999987653211122322 112 456678888887776543322 222333322
Q ss_pred ---hCCceEEEEEeCCCChh--hhhHhh---ccCCCCCCCcEEEEEeccHHHHhhc------------c----c------
Q 044214 127 ---LGHMKVLIVFDDVTCFS--QLESLM---GSLDWLTPVSRIILTTRNKQVLRNW------------R----V------ 176 (385)
Q Consensus 127 ---l~~k~~LlVlDdv~~~~--~~~~l~---~~~~~~~~gs~ilvTtR~~~~~~~~------------~----~------ 176 (385)
..+++.++|+||++... .++.+. ...........|++|.... ..... . .
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 26788999999997643 344433 2111122233455555432 11110 0 0
Q ss_pred -------eeccc---CCCCCCchHHHHHHHHHhCCCccchhHH
Q 044214 177 -------NAFKR---NHPDVGNEKLSSNVMKYAQGVPLALKVL 209 (385)
Q Consensus 177 -------~~~~~---~~~~~~~~~~~~~i~~~~~GlPLal~~~ 209 (385)
..+.. ........+.++.|++.++|.|..|..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l 238 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINIL 238 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHH
Confidence 11111 1112244678899999999999998866
No 13
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.96 E-value=7.9e-10 Score=101.78 Aligned_cols=253 Identities=19% Similarity=0.238 Sum_probs=168.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCC-CchHHHHHHHhCC
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNV-MPYIDLNFRRLGH 129 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-~~~~~~l~~~l~~ 129 (385)
..+.+.++|.|||||||++..+.. +...|...+|+...... .+...+.-.+...++-+... ......+.....+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pi----tD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPI----TDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhhhcccceeeeecccc----CchhHhHHHHHhhcccccccchHHHHHHHHHHhh
Confidence 357899999999999999999999 88899888888766665 33444444444445444432 2556678888999
Q ss_pred ceEEEEEeCCCChh-hhhHhhccCCCCCCCcEEEEEeccHHHHhhccc------eecc---------------cCCCCCC
Q 044214 130 MKVLIVFDDVTCFS-QLESLMGSLDWLTPVSRIILTTRNKQVLRNWRV------NAFK---------------RNHPDVG 187 (385)
Q Consensus 130 k~~LlVlDdv~~~~-~~~~l~~~~~~~~~gs~ilvTtR~~~~~~~~~~------~~~~---------------~~~~~~~ 187 (385)
++.++|+||..+.. .-..+...+...++.-.++.|+|.......... ..+. .-.-...
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~ 167 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDD 167 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceeecCC
Confidence 99999999996543 233333344434455678888887633222111 1111 0001113
Q ss_pred chHHHHHHHHHhCCCccchhHH-------hHHHHHHHhhh-------c------cCcccchhhhhccccCchhhhhhhhh
Q 044214 188 NEKLSSNVMKYAQGVPLALKVL-------VWESAISKLQR-------I------LHPSILEVLKISYDSLEDKEKNIFLD 247 (385)
Q Consensus 188 ~~~~~~~i~~~~~GlPLal~~~-------~w~~~l~~l~~-------~------~~~~~~~~l~~sy~~L~~~~k~~~~~ 247 (385)
......+|.+...|.|++|..+ ....+.+.++. . ........+.+||.-|+..++-.|..
T Consensus 168 ~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~r 247 (414)
T COG3903 168 NAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFGR 247 (414)
T ss_pred chHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhcc
Confidence 3466789999999999999998 22222222221 1 12567889999999999999999999
Q ss_pred ccccCCCccHHHHHHHHHHcCCc-------hhhhHHHhhcCCceeEec---CCcEEeCHHHHHHHHHHHhhcc
Q 044214 248 VACFFQGEHVDPVMKFFNASGFY-------PEIRISVLVDKPLIAICS---YKKIRMRDLLQELGGEIVRKES 310 (385)
Q Consensus 248 la~fp~~~~~~~l~~~~~~~g~~-------~~~~l~~L~~~sLi~~~~---~~~~~mH~lv~~~a~~~~~~e~ 310 (385)
++.|...|+.+ ...|.+-|-. ....+..|++.+++...+ .-.|+.-+-++.|+.....+..
T Consensus 248 La~~~g~f~~~--l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~~ 318 (414)
T COG3903 248 LAVFVGGFDLG--LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRSG 318 (414)
T ss_pred hhhhhhhhccc--HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 99998888776 2233332222 334577899999988654 2247777777888877766554
No 14
>PF05729 NACHT: NACHT domain
Probab=98.95 E-value=4e-09 Score=88.25 Aligned_cols=114 Identities=24% Similarity=0.325 Sum_probs=65.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCC------CceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHH-
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDF------DGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFR- 125 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~- 125 (385)
+++.|+|.+|+||||+++.++.++.... ...+|+. .+..... .....+...+......... .....+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~l~~~l~~~~~~~~~--~~~~~~~~~ 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDS-NNSRSLADLLFDQLPESIA--PIEELLQEL 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhc-cccchHHHHHHHhhccchh--hhHHHHHHH
Confidence 4789999999999999999998765443 3344444 4433322 2222333333333322221 11112222
Q ss_pred HhCCceEEEEEeCCCChhh---------hhHhhccCCC--CCCCcEEEEEeccHHH
Q 044214 126 RLGHMKVLIVFDDVTCFSQ---------LESLMGSLDW--LTPVSRIILTTRNKQV 170 (385)
Q Consensus 126 ~l~~k~~LlVlDdv~~~~~---------~~~l~~~~~~--~~~gs~ilvTtR~~~~ 170 (385)
....+++++|+|++++... +..++..+.. ..++++++||+|....
T Consensus 77 ~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~ 132 (166)
T PF05729_consen 77 LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF 132 (166)
T ss_pred HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH
Confidence 2357899999999974332 2222222221 2468999999998765
No 15
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.86 E-value=4.2e-08 Score=79.92 Aligned_cols=123 Identities=20% Similarity=0.157 Sum_probs=71.4
Q ss_pred cccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHh
Q 044214 32 VGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLL 111 (385)
Q Consensus 32 vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~ 111 (385)
+|++..++.+...+.. +..+.+.|+|.+|+|||++++.+++.....-..++++. .... .............
T Consensus 1 ~~~~~~~~~i~~~~~~--~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~----~~~~~~~~~~~~~-- 71 (151)
T cd00009 1 VGQEEAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDL----LEGLVVAELFGHF-- 71 (151)
T ss_pred CchHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhh----hhhhHHHHHhhhh--
Confidence 4788899999998873 24457889999999999999999998754334445554 2221 1111111000000
Q ss_pred CCCCCCchHHHHHHHhCCceEEEEEeCCCCh-----hhhhHhhccCCCC---CCCcEEEEEeccHH
Q 044214 112 KDKNVMPYIDLNFRRLGHMKVLIVFDDVTCF-----SQLESLMGSLDWL---TPVSRIILTTRNKQ 169 (385)
Q Consensus 112 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~l~~~~~~~---~~gs~ilvTtR~~~ 169 (385)
............++.++|+||++.. ..+.......... ..+..||+||....
T Consensus 72 ------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999853 2233333333221 35778888887643
No 16
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.83 E-value=3e-09 Score=90.80 Aligned_cols=50 Identities=34% Similarity=0.535 Sum_probs=35.3
Q ss_pred CccccchhHHHHHHhhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 30 QLVGVESTVEEIESLLG-VESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 30 ~~vGR~~~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
.|+||+++++++...+. ..+...+.+.|+|.+|+|||+|.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999994 234557899999999999999999999987665
No 17
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.79 E-value=3.8e-08 Score=90.38 Aligned_cols=147 Identities=22% Similarity=0.364 Sum_probs=84.3
Q ss_pred CCccccchhHH---HHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHH
Q 044214 29 NQLVGVESTVE---EIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQK 105 (385)
Q Consensus 29 ~~~vGR~~~l~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ 105 (385)
+++||-+..+. -|.+++. ++.+....+||++|+||||||+.++......|...--+. .++.++..-
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~---------~gvkdlr~i 92 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT---------SGVKDLREI 92 (436)
T ss_pred HHhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---------ccHHHHHHH
Confidence 45555554442 2333444 456666779999999999999999998777765321111 333333322
Q ss_pred HHHHHhCCCCCCchHHHHHHHhCCceEEEEEeCCC--ChhhhhHhhccCCCCCCCcEEEE--EeccHHH------Hhhcc
Q 044214 106 LLSNLLKDKNVMPYIDLNFRRLGHMKVLIVFDDVT--CFSQLESLMGSLDWLTPVSRIIL--TTRNKQV------LRNWR 175 (385)
Q Consensus 106 ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~ilv--TtR~~~~------~~~~~ 175 (385)
+ .. .-.....+++.+|++|.|. +..+-+.|++... .|.-|+| ||-++.. ...+.
T Consensus 93 ~-e~------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~ 156 (436)
T COG2256 93 I-EE------------ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRAR 156 (436)
T ss_pred H-HH------------HHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhh
Confidence 2 11 1123344889999999995 6667777877765 5766666 6666532 22222
Q ss_pred ceecccCCCCCCchHHHHH-HHHHhCCCc
Q 044214 176 VNAFKRNHPDVGNEKLSSN-VMKYAQGVP 203 (385)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~-i~~~~~GlP 203 (385)
+..|..-... ++..+.++ +.....|++
T Consensus 157 vf~lk~L~~~-di~~~l~ra~~~~~rgl~ 184 (436)
T COG2256 157 VFELKPLSSE-DIKKLLKRALLDEERGLG 184 (436)
T ss_pred eeeeecCCHH-HHHHHHHHHHhhhhcCCC
Confidence 2333322222 33444444 555666666
No 18
>PF13173 AAA_14: AAA domain
Probab=98.74 E-value=6.1e-08 Score=77.56 Aligned_cols=101 Identities=18% Similarity=0.219 Sum_probs=68.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCceE
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHMKV 132 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~ 132 (385)
+++.|.|+.|+|||||+++++++.. .-...+++. .... ........ +..+.+.+...+++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~--------~~~~~~~~---------~~~~~~~~~~~~~~~ 63 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDP--------RDRRLADP---------DLLEYFLELIKPGKK 63 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCH--------HHHHHhhh---------hhHHHHHHhhccCCc
Confidence 5899999999999999999998765 334455554 2111 11000000 022233333444778
Q ss_pred EEEEeCCCChhhhhHhhccCCCCCCCcEEEEEeccHHHHh
Q 044214 133 LIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLR 172 (385)
Q Consensus 133 LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~ 172 (385)
+++||++....+|......+.+..++.+|++|+.+.....
T Consensus 64 ~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~ 103 (128)
T PF13173_consen 64 YIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLS 103 (128)
T ss_pred EEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHh
Confidence 9999999988888888877776666789999998876654
No 19
>PTZ00202 tuzin; Provisional
Probab=98.70 E-value=1.6e-07 Score=87.88 Aligned_cols=102 Identities=16% Similarity=0.109 Sum_probs=72.6
Q ss_pred CCCCCCccccchhHHHHHHhhcCCC-CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHH
Q 044214 25 RDNKNQLVGVESTVEEIESLLGVES-KGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLR 103 (385)
Q Consensus 25 ~~~~~~~vGR~~~l~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~ 103 (385)
|...+.|+||+.++++|...|...+ +.+++++|+|++|+|||||++.+..... ...++.+. .+..+++
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNp-------rg~eElL 326 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDV-------RGTEDTL 326 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECC-------CCHHHHH
Confidence 6667899999999999999997433 3456999999999999999999997653 22444433 3568999
Q ss_pred HHHHHHHhCCCCCC--chHHHHHHHh-----C-CceEEEEEe
Q 044214 104 QKLLSNLLKDKNVM--PYIDLNFRRL-----G-HMKVLIVFD 137 (385)
Q Consensus 104 ~~ll~~l~~~~~~~--~~~~~l~~~l-----~-~k~~LlVlD 137 (385)
..++..++.+.... ++...+.+.+ . +++.+||+-
T Consensus 327 r~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~ 368 (550)
T PTZ00202 327 RSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLK 368 (550)
T ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999999643322 4444444433 2 556666653
No 20
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.69 E-value=8.8e-08 Score=76.85 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=72.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC-----CCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCC-C---chHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGD-----FDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNV-M---PYIDL 122 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-~---~~~~~ 122 (385)
.+.+.|+|.+|+|||+++.++++..... -..++|+. ... . .+...+...++..+...... . +..+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~-~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-CPS---S-RTPRDFAQEILEALGLPLKSRQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-HHH---H-SSHHHHHHHHHHHHT-SSSSTS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-eCC---C-CCHHHHHHHHHHHhCccccccCCHHHHHHH
Confidence 4689999999999999999999876432 34455665 322 2 57889999999999877665 2 55566
Q ss_pred HHHHhCCc-eEEEEEeCCCCh---hhhhHhhccCCCCCCCcEEEEEecc
Q 044214 123 NFRRLGHM-KVLIVFDDVTCF---SQLESLMGSLDWLTPVSRIILTTRN 167 (385)
Q Consensus 123 l~~~l~~k-~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~ilvTtR~ 167 (385)
+.+.+... ..+||+|+++.. ..++.+..... ..+.++|+..+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 66666654 469999999654 33444433322 567777777654
No 21
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=7.5e-07 Score=83.72 Aligned_cols=114 Identities=17% Similarity=0.217 Sum_probs=82.4
Q ss_pred CCCCCCCCccccchhHHHHHHhhcC--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCc--eEEEeeccccccCCCC
Q 044214 23 RPRDNKNQLVGVESTVEEIESLLGV--ESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDG--SCFLENVREESQIPGG 98 (385)
Q Consensus 23 ~~~~~~~~~vGR~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~w~~~~~~~~~~~~~ 98 (385)
.+...|+.+.+|+++++++...|.. ....+.-+.|+|.+|+|||+.++.+.+++.+.... .+.+. .... ..
T Consensus 11 ~~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN-c~~~----~t 85 (366)
T COG1474 11 LEDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN-CLEL----RT 85 (366)
T ss_pred CCCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe-eeeC----CC
Confidence 3455566699999999999988763 22233348999999999999999999988666433 45554 3333 67
Q ss_pred hHHHHHHHHHHHhCCCC-CC---chHHHHHHHhC--CceEEEEEeCCCC
Q 044214 99 LSCLRQKLLSNLLKDKN-VM---PYIDLNFRRLG--HMKVLIVFDDVTC 141 (385)
Q Consensus 99 ~~~l~~~ll~~l~~~~~-~~---~~~~~l~~~l~--~k~~LlVlDdv~~ 141 (385)
..+++..++++++.... .. +....+.+.+. ++.+++|||+++.
T Consensus 86 ~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~ 134 (366)
T COG1474 86 PYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDA 134 (366)
T ss_pred HHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhh
Confidence 78889999998863332 11 55566666664 4889999999964
No 22
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=2.8e-06 Score=83.95 Aligned_cols=51 Identities=27% Similarity=0.343 Sum_probs=42.1
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-.++||-+..++.|.+++..+. -.+.+.++|..|+||||+|+.+++.+.
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345789999999999999998422 345678999999999999999998764
No 23
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=3.1e-06 Score=84.86 Aligned_cols=51 Identities=27% Similarity=0.326 Sum_probs=41.9
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-+++||.+..++.|.+++..+ .-.+.+.++|..|+||||+|+.+++.+.
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~g-RL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGG-RLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34478999999999999999843 2345678999999999999999998653
No 24
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.58 E-value=1.2e-07 Score=81.44 Aligned_cols=57 Identities=23% Similarity=0.444 Sum_probs=39.8
Q ss_pred CCCCCCccccchhHHHHHHhhcC---CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC
Q 044214 25 RDNKNQLVGVESTVEEIESLLGV---ESKGVYALGIWGIGGIGKTTIARAIFDKISGDFD 81 (385)
Q Consensus 25 ~~~~~~~vGR~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 81 (385)
|..-++|||-+..++.+.-++.. ..+....+.+||++|+||||||.-+++.....|.
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 34568899999999887765542 2345778999999999999999999998876653
No 25
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.56 E-value=1.8e-06 Score=87.16 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=74.1
Q ss_pred CCCCCCCCccccchhHHHHHHhhcC---CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC-----CC--ceEEEeecccc
Q 044214 23 RPRDNKNQLVGVESTVEEIESLLGV---ESKGVYALGIWGIGGIGKTTIARAIFDKISGD-----FD--GSCFLENVREE 92 (385)
Q Consensus 23 ~~~~~~~~~vGR~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~--~~~w~~~~~~~ 92 (385)
.+...|+.+.||++|+++|...|.. ++....++.|+|.+|.|||+.++.+.+++.+. .+ .++++. ....
T Consensus 749 ~~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-Cm~L 827 (1164)
T PTZ00112 749 QLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-GMNV 827 (1164)
T ss_pred CcccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-CCcc
Confidence 3445568899999999999988863 23333577899999999999999999876321 22 234443 2222
Q ss_pred ccCCCChHHHHHHHHHHHhCCCCC--C---chHHHHHHHhC---CceEEEEEeCCCC
Q 044214 93 SQIPGGLSCLRQKLLSNLLKDKNV--M---PYIDLNFRRLG---HMKVLIVFDDVTC 141 (385)
Q Consensus 93 ~~~~~~~~~l~~~ll~~l~~~~~~--~---~~~~~l~~~l~---~k~~LlVlDdv~~ 141 (385)
.....++..|..++....+. . .....+...+. ....+||||+++.
T Consensus 828 ----stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~ 880 (1164)
T PTZ00112 828 ----VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDY 880 (1164)
T ss_pred ----CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhh
Confidence 45566777777777444332 1 33344444442 2346999999974
No 26
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.54 E-value=5.6e-07 Score=86.77 Aligned_cols=111 Identities=21% Similarity=0.414 Sum_probs=66.9
Q ss_pred CCCCCccccchhHHH---HHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHH
Q 044214 26 DNKNQLVGVESTVEE---IESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCL 102 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l 102 (385)
..-+++||++..+.. +.+++. .+....+.|+|++|+||||||+.+++.....|. .+... . .+...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~--~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~a~--~----~~~~~- 76 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIE--AGRLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALSAV--T----SGVKD- 76 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHH--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEecc--c----ccHHH-
Confidence 344679999988766 777776 345567889999999999999999997654432 12111 0 11111
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHhCCceEEEEEeCCCCh--hhhhHhhccCCCCCCCcEEEE
Q 044214 103 RQKLLSNLLKDKNVMPYIDLNFRRLGHMKVLIVFDDVTCF--SQLESLMGSLDWLTPVSRIIL 163 (385)
Q Consensus 103 ~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilv 163 (385)
.+.++.... .....+++.+|++|+++.. .+.+.++..+. .+..+++
T Consensus 77 ir~ii~~~~------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI 124 (413)
T PRK13342 77 LREVIEEAR------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLI 124 (413)
T ss_pred HHHHHHHHH------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEE
Confidence 112221110 0112457789999999743 45566666554 2444444
No 27
>PLN03025 replication factor C subunit; Provisional
Probab=98.51 E-value=1.3e-06 Score=81.44 Aligned_cols=126 Identities=17% Similarity=0.266 Sum_probs=70.8
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC-CCCceEEEeeccccccCCCChHHHHH
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG-DFDGSCFLENVREESQIPGGLSCLRQ 104 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~w~~~~~~~~~~~~~~~~l~~ 104 (385)
..-.+++|.++.++.|..++.. ++.+.+.++|++|+||||+|..+++.+.. .|...+.-.+. +.. .+.. ..+
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~---sd~-~~~~-~vr 82 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARD--GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA---SDD-RGID-VVR 82 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc---ccc-ccHH-HHH
Confidence 3446789999999999888773 34455789999999999999999997633 33322111111 111 1222 222
Q ss_pred HHHHHHhCCCCCCchHHHHHHHhCCceEEEEEeCCCCh--hhhhHhhccCCCCCCCcEEEEEecc
Q 044214 105 KLLSNLLKDKNVMPYIDLNFRRLGHMKVLIVFDDVTCF--SQLESLMGSLDWLTPVSRIILTTRN 167 (385)
Q Consensus 105 ~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~ 167 (385)
..+......... .-.++.-++|+|+++.. .....+...+......+++++++..
T Consensus 83 ~~i~~~~~~~~~---------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~ 138 (319)
T PLN03025 83 NKIKMFAQKKVT---------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNT 138 (319)
T ss_pred HHHHHHHhcccc---------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCC
Confidence 222221111000 00245679999999743 3344444433333455667766643
No 28
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.47 E-value=3.6e-06 Score=78.42 Aligned_cols=50 Identities=34% Similarity=0.410 Sum_probs=41.4
Q ss_pred CCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 27 NKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 27 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.-.+++|+++.++.+..++.. +..+.+.|+|.+|+||||+|+.+++.+..
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~--~~~~~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKE--KNMPHLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 336699999999999999974 33445799999999999999999997643
No 29
>PRK06893 DNA replication initiation factor; Validated
Probab=98.46 E-value=1.5e-06 Score=76.86 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=29.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.+.+.|+|++|+|||.|++.+++........+.|+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 356899999999999999999998765555666776
No 30
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.43 E-value=1.6e-06 Score=81.42 Aligned_cols=50 Identities=24% Similarity=0.350 Sum_probs=41.8
Q ss_pred CCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 27 NKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 27 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.-+.++|++..++.+..++.. +..+.+.++|++|+|||++|+.+++.+..
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDS--PNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 346799999999999998874 34456889999999999999999987644
No 31
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=1.6e-05 Score=79.53 Aligned_cols=50 Identities=32% Similarity=0.398 Sum_probs=41.8
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..-.++||.+..++.|.+++..+ .-.+.+.++|..|+||||+|+.+++.+
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34478999999999999999842 224578999999999999999999865
No 32
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=6.7e-06 Score=77.92 Aligned_cols=51 Identities=27% Similarity=0.349 Sum_probs=42.2
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-.+++|-+..++.+.+.+..+ .-.+.+.++|+.|+||||+|+.+++.+.
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 34477999999999999988743 2345779999999999999999998764
No 33
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=4.7e-06 Score=82.58 Aligned_cols=51 Identities=33% Similarity=0.335 Sum_probs=42.5
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-.++||.+...+.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999998432 256789999999999999999998763
No 34
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=1.2e-05 Score=75.69 Aligned_cols=52 Identities=21% Similarity=0.156 Sum_probs=43.0
Q ss_pred CCCCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 24 PRDNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 24 ~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.|....+++|.+...+.|.+.+..+ .-...+.++|+.|+||+++|..+++.+
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3556678999999999999988842 224568999999999999999999865
No 35
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.36 E-value=9.6e-07 Score=82.21 Aligned_cols=97 Identities=16% Similarity=0.106 Sum_probs=63.2
Q ss_pred HHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC-CCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCC--
Q 044214 41 IESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG-DFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVM-- 117 (385)
Q Consensus 41 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-- 117 (385)
+.+.+.+ -++-+..+|+|++|+||||||+.+++.+.. +|+..+|+..+++. +..+.++++.+...+.....+.
T Consensus 159 vID~l~P-IGkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER---~~EVtdiqrsIlg~vv~st~d~~~ 234 (416)
T PRK09376 159 IIDLIAP-IGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPA 234 (416)
T ss_pred eeeeecc-cccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc---hhHHHHHHHHhcCcEEEECCCCCH
Confidence 3444442 133457889999999999999999997644 79999999855542 1467788887764332222211
Q ss_pred --------chHHHHHHH-hCCceEEEEEeCCCC
Q 044214 118 --------PYIDLNFRR-LGHMKVLIVFDDVTC 141 (385)
Q Consensus 118 --------~~~~~l~~~-l~~k~~LlVlDdv~~ 141 (385)
...+....+ ..+++++|++|++..
T Consensus 235 ~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 235 ERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 111222222 367999999999953
No 36
>PRK04195 replication factor C large subunit; Provisional
Probab=98.34 E-value=2.5e-06 Score=83.91 Aligned_cols=51 Identities=27% Similarity=0.438 Sum_probs=42.3
Q ss_pred CCCCCccccchhHHHHHHhhcC--CCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 26 DNKNQLVGVESTVEEIESLLGV--ESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..-.+++|.+..++.+.+|+.. .....+.+.|+|++|+||||+|+.+++.+
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3446799999999999999873 11226789999999999999999999976
No 37
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=6.3e-06 Score=84.23 Aligned_cols=51 Identities=24% Similarity=0.306 Sum_probs=42.0
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCC-eEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKG-VYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
..-.++||-+..++.|.+++.. ++ ...+.++|+.|+||||+|+.+++.+..
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~--~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQ--QRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh--CCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 3447899999999999999873 34 445689999999999999999997643
No 38
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.33 E-value=1.9e-06 Score=76.10 Aligned_cols=58 Identities=19% Similarity=0.302 Sum_probs=41.8
Q ss_pred CCCccc--cchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 28 KNQLVG--VESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 28 ~~~~vG--R~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
-++|++ .+..++++.+++. ......+.|+|.+|+|||+||+.++++........+++.
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~ 73 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP 73 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe
Confidence 346663 4456777887765 234568999999999999999999997765544555554
No 39
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.32 E-value=2.3e-06 Score=77.63 Aligned_cols=118 Identities=22% Similarity=0.324 Sum_probs=70.9
Q ss_pred CCccccchhHH---HHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHH
Q 044214 29 NQLVGVESTVE---EIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQK 105 (385)
Q Consensus 29 ~~~vGR~~~l~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ 105 (385)
.++||.+..+. .|.+++. .+....+.+||++|+||||||+.++..-+.+- ..|+......... .++..++.+
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~a~t-~dvR~ife~ 212 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATNAKT-NDVRDIFEQ 212 (554)
T ss_pred HHhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEeccccch-HHHHHHHHH
Confidence 45666654443 2344444 45677888999999999999999998665542 4455421111111 233333222
Q ss_pred HHHHHhCCCCCCchHHHHHHHhCCceEEEEEeCCC--ChhhhhHhhccCCCCCCCcEEEE--EeccHH
Q 044214 106 LLSNLLKDKNVMPYIDLNFRRLGHMKVLIVFDDVT--CFSQLESLMGSLDWLTPVSRIIL--TTRNKQ 169 (385)
Q Consensus 106 ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~ilv--TtR~~~ 169 (385)
-- -...+.++|.+|++|.|. +..+-+.|++... +|..++| ||.++.
T Consensus 213 aq---------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE---~G~I~lIGATTENPS 262 (554)
T KOG2028|consen 213 AQ---------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVE---NGDITLIGATTENPS 262 (554)
T ss_pred HH---------------HHHhhhcceeEEEeHHhhhhhhhhhhcccceec---cCceEEEecccCCCc
Confidence 21 112456788999999994 5566666666654 5665555 666653
No 40
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=5.7e-05 Score=75.57 Aligned_cols=50 Identities=26% Similarity=0.377 Sum_probs=41.3
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..-+++||-+..++.|.+++..+ .-.+.+.++|..|+||||+|+.+++.+
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999998843 234677999999999999999998865
No 41
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=5.9e-05 Score=74.30 Aligned_cols=50 Identities=24% Similarity=0.285 Sum_probs=41.5
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..-.++||-+..++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 34477999999999999999842 234567899999999999999999865
No 42
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.29 E-value=3.4e-06 Score=80.06 Aligned_cols=56 Identities=21% Similarity=0.365 Sum_probs=42.9
Q ss_pred CCCCCCccccchhHHHHHHhhcCC-----------CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 25 RDNKNQLVGVESTVEEIESLLGVE-----------SKGVYALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 25 ~~~~~~~vGR~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
....+.+.|+++.++++.+.+... -..++-+.|+|++|+|||++|+.+++.....|
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~ 184 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF 184 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE
Confidence 334457899999999998876421 12355699999999999999999999775543
No 43
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.28 E-value=2.2e-06 Score=76.26 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=58.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhC-CCCceEEEeeccccccCCCChHHHHHHHHHH-----HhCCCCC-C----ch
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISG-DFDGSCFLENVREESQIPGGLSCLRQKLLSN-----LLKDKNV-M----PY 119 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~-----l~~~~~~-~----~~ 119 (385)
.-+.++|.|.+|+|||||++.+++.+.. +|+..+|+..+.+. +.+..++++.+... ...+... . ..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er---~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER---PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC---CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 3457899999999999999999997643 68999998854432 15788888888332 2221110 0 12
Q ss_pred HHHHHHH-hCCceEEEEEeCCCC
Q 044214 120 IDLNFRR-LGHMKVLIVFDDVTC 141 (385)
Q Consensus 120 ~~~l~~~-l~~k~~LlVlDdv~~ 141 (385)
......+ -.++++++++|++..
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHH
Confidence 2222222 347999999999954
No 44
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.28 E-value=7.6e-06 Score=65.43 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=21.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 044214 55 LGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 55 v~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 45
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.28 E-value=1.5e-05 Score=82.34 Aligned_cols=49 Identities=27% Similarity=0.309 Sum_probs=40.5
Q ss_pred CCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 28 KNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
-+.++||+++++.+...|... ...-+.++|.+|+|||++|..+++++..
T Consensus 181 l~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 357999999999999988742 3335679999999999999999998643
No 46
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.27 E-value=6.8e-06 Score=75.20 Aligned_cols=111 Identities=24% Similarity=0.318 Sum_probs=80.3
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCC-eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHH
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKG-VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQ 104 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~ 104 (385)
...+.+.+|+.++..+..++...+.. +..|.|+|-+|.|||.+.+++.+.... ..+|++ ..+. +....++.
T Consensus 3 ~l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n-~~ec----ft~~~lle 74 (438)
T KOG2543|consen 3 VLEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLN-CVEC----FTYAILLE 74 (438)
T ss_pred ccccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeee-hHHh----ccHHHHHH
Confidence 34678999999999999999865543 556699999999999999999987633 356886 4444 88899999
Q ss_pred HHHHHHh-CCCCCC----------chHHHHHH--HhC--CceEEEEEeCCCChhh
Q 044214 105 KLLSNLL-KDKNVM----------PYIDLNFR--RLG--HMKVLIVFDDVTCFSQ 144 (385)
Q Consensus 105 ~ll~~l~-~~~~~~----------~~~~~l~~--~l~--~k~~LlVlDdv~~~~~ 144 (385)
.|+.+.. .+.+.. +....+.+ ... ++.++|||||++...+
T Consensus 75 ~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD 129 (438)
T KOG2543|consen 75 KILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD 129 (438)
T ss_pred HHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc
Confidence 9999985 222211 22333333 122 4689999999975544
No 47
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.7e-05 Score=78.23 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=41.6
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-.+++|-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+.
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34467999999999999998742 2345678999999999999999998654
No 48
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.6e-05 Score=77.25 Aligned_cols=50 Identities=26% Similarity=0.303 Sum_probs=41.0
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..-.++||-+..++.|.+.+..+. -.+.+.++|+.|+||||+|+.+++.+
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHH
Confidence 445789999999999998887422 24578999999999999999998854
No 49
>PRK08116 hypothetical protein; Validated
Probab=98.26 E-value=8.3e-06 Score=73.72 Aligned_cols=102 Identities=22% Similarity=0.243 Sum_probs=59.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCceE
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHMKV 132 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~ 132 (385)
..+.++|.+|+|||.||..+++.+..+...+++++ ...++..+......... .....+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~~~--~~~~~~~~~l~~~d- 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSSGK--EDENEIIRSLVNAD- 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhcccc--ccHHHHHHHhcCCC-
Confidence 35889999999999999999998765544445554 23344444433322211 22334445555544
Q ss_pred EEEEeCCC--Chhhh--hHhhccCCC-CCCCcEEEEEeccH
Q 044214 133 LIVFDDVT--CFSQL--ESLMGSLDW-LTPVSRIILTTRNK 168 (385)
Q Consensus 133 LlVlDdv~--~~~~~--~~l~~~~~~-~~~gs~ilvTtR~~ 168 (385)
||||||+. ....| ..+...+.. ...+..+|+||...
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999993 22222 223222211 12456789998753
No 50
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=2.2e-05 Score=72.87 Aligned_cols=161 Identities=18% Similarity=0.212 Sum_probs=92.8
Q ss_pred CCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC------CCCceEEEeeccccccCCCChHHH
Q 044214 29 NQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG------DFDGSCFLENVREESQIPGGLSCL 102 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~w~~~~~~~~~~~~~~~~l 102 (385)
.+++|-+...+.+.+.+..+ .-.+.+.++|+.|+||||+|+.+++.+.. +.+...|.. .. ... ..+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~~--~~~-i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-IN--KKS-IGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-cc--CCC-CCHHH-
Confidence 45789888899999998742 23567799999999999999999996522 223223322 11 111 22222
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHhCCceEEEEEeCCC--ChhhhhHhhccCCCCCCCcEEEEEeccHHHH-----hhcc
Q 044214 103 RQKLLSNLLKDKNVMPYIDLNFRRLGHMKVLIVFDDVT--CFSQLESLMGSLDWLTPVSRIILTTRNKQVL-----RNWR 175 (385)
Q Consensus 103 ~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~-----~~~~ 175 (385)
.+++...+.... ..+++-++|+|+++ +...++.++..+..-.+++.+|++|.+.+.. ..+.
T Consensus 78 ir~~~~~~~~~p------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 78 IRNIIEEVNKKP------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred HHHHHHHHhcCc------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce
Confidence 222222221111 12345566677764 5667888888877666788888888765322 1121
Q ss_pred ceecccCCC-----------CCCchHHHHHHHHHhCCCccchh
Q 044214 176 VNAFKRNHP-----------DVGNEKLSSNVMKYAQGVPLALK 207 (385)
Q Consensus 176 ~~~~~~~~~-----------~~~~~~~~~~i~~~~~GlPLal~ 207 (385)
...|..... .....+.++.++..++|.|.-+.
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 146 IYKLNRLSKEEIEKFISYKYNDIKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeeCCCcCHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHH
Confidence 112211100 01223446678888899886544
No 51
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.5e-05 Score=76.77 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=42.2
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
..-.+++|-+..+..|..++..+. -.+.+.++|+.|+||||+|+.+++.+..
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 345779999999999999988432 2346899999999999999999987643
No 52
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.3e-05 Score=76.32 Aligned_cols=51 Identities=27% Similarity=0.268 Sum_probs=40.8
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-++++|.+...+.|...+..+. -.+.+.++|++|+||||+|+.+++.+.
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345779999988888888887322 235688999999999999999998653
No 53
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=2.2e-05 Score=76.88 Aligned_cols=51 Identities=29% Similarity=0.308 Sum_probs=41.6
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-.+++|-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+.
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 34467899999999999877742 2346789999999999999999998763
No 54
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.9e-05 Score=76.89 Aligned_cols=51 Identities=29% Similarity=0.388 Sum_probs=41.5
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-.+++|-+..++.|.+++..+ .-.+.+.++|+.|+||||+|+.+++.+.
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~-~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQ-RLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34477999999999999998842 2245678999999999999999998763
No 55
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=1.5e-05 Score=78.21 Aligned_cols=51 Identities=29% Similarity=0.213 Sum_probs=41.5
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-++++|-+...+.|.+++..+. -.+.+.++|++|+||||+|+.+++.+.
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344679999999999999888432 345679999999999999999998764
No 56
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.22 E-value=3.6e-05 Score=72.87 Aligned_cols=51 Identities=24% Similarity=0.293 Sum_probs=41.9
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-..++|.+..++.+.+++..+. -.+.+.++|++|+|||++|+.+++.+.
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344678999999999999987422 345788999999999999999998763
No 57
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.19 E-value=1.9e-05 Score=69.67 Aligned_cols=242 Identities=16% Similarity=0.245 Sum_probs=128.7
Q ss_pred CCCCCCccccchhHHHHHHhhcC---CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHH
Q 044214 25 RDNKNQLVGVESTVEEIESLLGV---ESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSC 101 (385)
Q Consensus 25 ~~~~~~~vGR~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~ 101 (385)
|..-.+|||-++..++|.-.+.. .....-.|.++|++|.||||||.-+++.+...+. +. .+..-..|.++..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k----~t-sGp~leK~gDlaa 96 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK----IT-SGPALEKPGDLAA 96 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE----ec-ccccccChhhHHH
Confidence 44457899999888888776652 2234668999999999999999999998765543 22 1112111133332
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHhCCceEEEEEeCCCCh-hhhhHhh-ccCC--------CCCCCcE-----------
Q 044214 102 LRQKLLSNLLKDKNVMPYIDLNFRRLGHMKVLIVFDDVTCF-SQLESLM-GSLD--------WLTPVSR----------- 160 (385)
Q Consensus 102 l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~l~-~~~~--------~~~~gs~----------- 160 (385)
++.. +. ..=+|++|.+... ...++++ +... ..+++++
T Consensus 97 iLt~----Le------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 97 ILTN----LE------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred HHhc----CC------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 2222 11 2235667777421 1122221 2111 1233333
Q ss_pred EEEEeccHHHHhhcc----c---eec-------------ccCCCCCCchHHHHHHHHHhCCCccchh-HHhHHHHHHHhh
Q 044214 161 IILTTRNKQVLRNWR----V---NAF-------------KRNHPDVGNEKLSSNVMKYAQGVPLALK-VLVWESAISKLQ 219 (385)
Q Consensus 161 ilvTtR~~~~~~~~~----~---~~~-------------~~~~~~~~~~~~~~~i~~~~~GlPLal~-~~~w~~~l~~l~ 219 (385)
|=.|||.-.+..... . .-| ...-..+..++.+.+|+++..|-|--.. ++.|-.......
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V~ 234 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQVK 234 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHHHHHh
Confidence 334777432222211 1 000 0011122345678899999999995333 223322222222
Q ss_pred hccC------cccchhhhhccccCchhhhhhhhhccccC--CCccHHHHHHHHHHcCCchhhhHH-HhhcCCceeEecCC
Q 044214 220 RILH------PSILEVLKISYDSLEDKEKNIFLDVACFF--QGEHVDPVMKFFNASGFYPEIRIS-VLVDKPLIAICSYK 290 (385)
Q Consensus 220 ~~~~------~~~~~~l~~sy~~L~~~~k~~~~~la~fp--~~~~~~~l~~~~~~~g~~~~~~l~-~L~~~sLi~~~~~~ 290 (385)
.... ......+..-=..|+...+..+..+.-.. ..+-.+.+......+....++.++ -|++.|+|+....|
T Consensus 235 ~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~gfi~RTpRG 314 (332)
T COG2255 235 GDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQGFIQRTPRG 314 (332)
T ss_pred cCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhchhhhCCCc
Confidence 1111 12333444444566666666665544333 226667777666655544555544 38999999988888
Q ss_pred cEE
Q 044214 291 KIR 293 (385)
Q Consensus 291 ~~~ 293 (385)
+.-
T Consensus 315 R~a 317 (332)
T COG2255 315 RIA 317 (332)
T ss_pred cee
Confidence 753
No 58
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.18 E-value=3.7e-05 Score=80.32 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=41.5
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
..-+.++||+.+++++...|... ...-+.++|.+|+||||+|..+++++..
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 34467999999999999988742 3335669999999999999999998744
No 59
>PRK08727 hypothetical protein; Validated
Probab=98.18 E-value=1.2e-05 Score=71.26 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=38.6
Q ss_pred CCCccccch-hHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 28 KNQLVGVES-TVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 28 ~~~~vGR~~-~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
-++|++... .+..+..... ......+.|+|.+|+|||.|++.+++...+....+.++.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~--~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA--GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh--ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 355666553 3444443332 122346999999999999999999998766555566665
No 60
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.17 E-value=4.8e-05 Score=68.55 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=74.1
Q ss_pred CCCCccccc---hhHHHHHHhhcC-CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC------ceEEEeeccccccCC
Q 044214 27 NKNQLVGVE---STVEEIESLLGV-ESKGVYALGIWGIGGIGKTTIARAIFDKISGDFD------GSCFLENVREESQIP 96 (385)
Q Consensus 27 ~~~~~vGR~---~~l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~w~~~~~~~~~~~ 96 (385)
..+..||-. ..++.|.++|.. .....+-+.|+|.+|.|||++++++.......++ .++.+. ....
T Consensus 32 ~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~- 106 (302)
T PF05621_consen 32 RADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPE- 106 (302)
T ss_pred hcCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCC-
Confidence 346778865 345566666664 3345678999999999999999999986533332 122222 2223
Q ss_pred CChHHHHHHHHHHHhCCCCCC----chHHHHHHHhCC-ceEEEEEeCCCC
Q 044214 97 GGLSCLRQKLLSNLLKDKNVM----PYIDLNFRRLGH-MKVLIVFDDVTC 141 (385)
Q Consensus 97 ~~~~~l~~~ll~~l~~~~~~~----~~~~~l~~~l~~-k~~LlVlDdv~~ 141 (385)
++...+...|+..++.+.... .........++. +.-+||+|++.+
T Consensus 107 p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 107 PDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred CChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 889999999999998876533 333334445544 556899999954
No 61
>PF14516 AAA_35: AAA-like domain
Probab=98.17 E-value=0.00044 Score=64.64 Aligned_cols=114 Identities=8% Similarity=0.071 Sum_probs=72.5
Q ss_pred CCCCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeecccccc-CCCChHHH
Q 044214 24 PRDNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQ-IPGGLSCL 102 (385)
Q Consensus 24 ~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~-~~~~~~~l 102 (385)
.+...+.+|.|...-+++.+.+... -..+.|.|+-.+|||+|..++.+..++.-...++++ ...... ...+...+
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHH
Confidence 3566678889996666777666631 238899999999999999999988755433444554 333222 21456666
Q ss_pred HHHHHHHHhCCCC---C------------CchHHHHHHH-h--CCceEEEEEeCCCC
Q 044214 103 RQKLLSNLLKDKN---V------------MPYIDLNFRR-L--GHMKVLIVFDDVTC 141 (385)
Q Consensus 103 ~~~ll~~l~~~~~---~------------~~~~~~l~~~-l--~~k~~LlVlDdv~~ 141 (385)
++.++..+...-. . ......+.+. + .+++.+|++|+++.
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~ 138 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDR 138 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhh
Confidence 6666665543321 0 0222233332 2 25899999999973
No 62
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=0.00018 Score=71.38 Aligned_cols=51 Identities=29% Similarity=0.279 Sum_probs=42.2
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-.+++|++..++.+.+.+..+ .-.+.+.++|+.|+||||+|+.+++.+.
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 34578999999999999998742 2346788999999999999999998763
No 63
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.16 E-value=1.5e-05 Score=69.56 Aligned_cols=56 Identities=18% Similarity=0.383 Sum_probs=43.1
Q ss_pred CCCCCCCccccchhHHHHHHhhcC--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 24 PRDNKNQLVGVESTVEEIESLLGV--ESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 24 ~~~~~~~~vGR~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
.+..-+.++|.+.+.+.|.+-... ......-+.+||..|.|||++++++.+.+.+.
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 355557899999999988774431 12345578899999999999999999987654
No 64
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=3.7e-05 Score=73.77 Aligned_cols=51 Identities=22% Similarity=0.254 Sum_probs=41.7
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-.+++|.+...+.|.+++..+. -...+.++|+.|+||||+|..+++.+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 345789999999999999888422 244588999999999999999998764
No 65
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.16 E-value=4.9e-05 Score=79.57 Aligned_cols=47 Identities=28% Similarity=0.452 Sum_probs=39.7
Q ss_pred CCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 29 NQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+.++||+++++++...|... ...-+.++|.+|+|||++|..+++++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999842 233457999999999999999999764
No 66
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.15 E-value=2e-05 Score=69.70 Aligned_cols=59 Identities=17% Similarity=0.317 Sum_probs=37.6
Q ss_pred CCCcc-ccchhH-HHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 28 KNQLV-GVESTV-EEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 28 ~~~~v-GR~~~l-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
-++|+ |..... ..+.++... ......+.|+|.+|+|||+||+.+++.....-...+++.
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~~-~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAAG-PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred hcccccCCcHHHHHHHHHHHhc-cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 35555 554444 444554442 233457889999999999999999997643333344444
No 67
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.15 E-value=8.9e-06 Score=82.97 Aligned_cols=53 Identities=26% Similarity=0.441 Sum_probs=41.1
Q ss_pred CCCCCccccchhHH---HHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 26 DNKNQLVGVESTVE---EIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 26 ~~~~~~vGR~~~l~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
..-++|+|.+..+. .+.+.+. .+....+.++|++|+||||||+.+++.....|
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~--~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f 80 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIK--ADRVGSLILYGPPGVGKTTLARIIANHTRAHF 80 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 33467899998874 5666666 34556778999999999999999999776555
No 68
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=2.2e-05 Score=73.62 Aligned_cols=54 Identities=24% Similarity=0.204 Sum_probs=44.9
Q ss_pred CCCCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 24 PRDNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 24 ~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.|.....++|-+...+.+...+..+. -...+.|+|+.|+||||+|..+++.+-.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 45666789999999999999998432 3457899999999999999999997644
No 69
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=3.1e-05 Score=77.61 Aligned_cols=52 Identities=27% Similarity=0.325 Sum_probs=42.2
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
..-.++||-+..++.|.+.+..+. -.+.+.++|..|+||||+|+.+++.+..
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 445789999999999999988432 2456789999999999999999986543
No 70
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.13 E-value=1.6e-05 Score=75.93 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=41.3
Q ss_pred CCCCCccccchhHHHHHHhhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 26 DNKNQLVGVESTVEEIESLLGV-----------ESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
...+.+.|+++.++++.+.+.. +-..++-|.++|++|+|||++|+.+++....
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~ 191 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA 191 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC
Confidence 3345688999999999887631 1134567999999999999999999997653
No 71
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=8.7e-05 Score=74.71 Aligned_cols=51 Identities=25% Similarity=0.332 Sum_probs=41.8
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-.+++|-+..++.|..++..+. -.+.+.++|..|+||||+|+.+++.+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344789999999999999887432 345678999999999999999998764
No 72
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.11 E-value=3e-05 Score=81.24 Aligned_cols=49 Identities=18% Similarity=0.299 Sum_probs=40.6
Q ss_pred CCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 28 KNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
-+.++||+.+++++...|... ...-+.++|.+|+|||++|..++.++..
T Consensus 177 l~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 356999999999999988842 3335669999999999999999998743
No 73
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.11 E-value=0.0001 Score=63.05 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=27.6
Q ss_pred HHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 40 EIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 40 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.+.+.+.. ..-...+.++|+.|+|||++|+.+.+.+.
T Consensus 3 ~l~~~i~~-~~~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 3 QLKRALEK-GRLAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred HHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 34555542 12246789999999999999999998764
No 74
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.10 E-value=1.1e-05 Score=75.59 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=60.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCC----------chH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGD-FDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVM----------PYI 120 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~----------~~~ 120 (385)
-+.++|+|.+|+|||||++.+++.+... |+..+|+..+++. +..+.++++.+...+.....+. ...
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER---~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC---CccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 4579999999999999999999977554 9999999855332 2678888888855443222211 111
Q ss_pred HHHHHH-hCCceEEEEEeCCCCh
Q 044214 121 DLNFRR-LGHMKVLIVFDDVTCF 142 (385)
Q Consensus 121 ~~l~~~-l~~k~~LlVlDdv~~~ 142 (385)
+..... -.+++++|++|++...
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 122222 3579999999999643
No 75
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=4.7e-05 Score=72.46 Aligned_cols=49 Identities=27% Similarity=0.304 Sum_probs=40.2
Q ss_pred CCccccchhHHHHHHhhcCCCC--------CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 29 NQLVGVESTVEEIESLLGVESK--------GVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
++++|-+..++.|.+++..+.+ -.+.+.++|++|+|||++|+.+++.+-
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4688999999999999885321 356789999999999999999998653
No 76
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.09 E-value=4.2e-05 Score=74.19 Aligned_cols=94 Identities=15% Similarity=0.182 Sum_probs=54.5
Q ss_pred ccccchhHH--HHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC--ceEEEeeccccccCCCChHHHHHHH
Q 044214 31 LVGVESTVE--EIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFD--GSCFLENVREESQIPGGLSCLRQKL 106 (385)
Q Consensus 31 ~vGR~~~l~--~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~w~~~~~~~~~~~~~~~~l~~~l 106 (385)
++|-..... ...+.... .+....+.|+|.+|+|||.|++.+++.+...++ .++|++ ..++...+
T Consensus 108 v~g~~n~~a~~~~~~~~~~-~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-----------~~~f~~~~ 175 (440)
T PRK14088 108 VVGPGNSFAYHAALEVAKN-PGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDL 175 (440)
T ss_pred ccCCchHHHHHHHHHHHhC-cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHH
Confidence 347544432 33333332 223446999999999999999999998766543 233443 22344444
Q ss_pred HHHHhCCCCCCchHHHHHHHhCCceEEEEEeCCCC
Q 044214 107 LSNLLKDKNVMPYIDLNFRRLGHMKVLIVFDDVTC 141 (385)
Q Consensus 107 l~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 141 (385)
...+... ....+.+.+..+.-+|++||++.
T Consensus 176 ~~~~~~~-----~~~~f~~~~~~~~dvLlIDDi~~ 205 (440)
T PRK14088 176 VDSMKEG-----KLNEFREKYRKKVDVLLIDDVQF 205 (440)
T ss_pred HHHHhcc-----cHHHHHHHHHhcCCEEEEechhh
Confidence 4443221 12334444444556899999963
No 77
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=0.00026 Score=70.92 Aligned_cols=52 Identities=25% Similarity=0.362 Sum_probs=42.9
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
..-.+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+..
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 345789999999999999998432 3457889999999999999999997643
No 78
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.08 E-value=2e-05 Score=73.31 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=42.1
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-.+++|.+...+.+..++..+ .-..++.++|++|+|||++|+.+++...
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 44577999999999999998742 2356777899999999999999998764
No 79
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=7.4e-05 Score=71.08 Aligned_cols=51 Identities=27% Similarity=0.326 Sum_probs=42.3
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-.+++|.+...+.+.+.+..+ .-.+.+.++|++|+|||++|+.+++.+.
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34477899999999999999842 2346888999999999999999998764
No 80
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.06 E-value=2.5e-05 Score=69.32 Aligned_cols=57 Identities=14% Similarity=0.246 Sum_probs=37.3
Q ss_pred CCcc-ccc-hhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 29 NQLV-GVE-STVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 29 ~~~v-GR~-~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
++|+ |-. ..+..+.++... ...+.+.|+|++|+|||+|++.+++........+.++.
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~ 80 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP 80 (235)
T ss_pred cccccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3454 633 334445554432 23357899999999999999999997765544455554
No 81
>PRK05642 DNA replication initiation factor; Validated
Probab=98.04 E-value=3.2e-05 Score=68.55 Aligned_cols=35 Identities=17% Similarity=0.435 Sum_probs=28.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
..+.|+|..|+|||.|++.+++.+...-..++|++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 57899999999999999999987765445566665
No 82
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.02 E-value=2.3e-05 Score=68.73 Aligned_cols=120 Identities=20% Similarity=0.303 Sum_probs=67.0
Q ss_pred CccccchhHH-HHHHhh-cCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCc--eEEEeeccccccCCCChHHHHHH
Q 044214 30 QLVGVESTVE-EIESLL-GVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDG--SCFLENVREESQIPGGLSCLRQK 105 (385)
Q Consensus 30 ~~vGR~~~l~-~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~w~~~~~~~~~~~~~~~~l~~~ 105 (385)
.++|-..+.. .....+ .........+.|+|..|+|||.|.+++++.+.+..+. +++++ ..++...
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~f~~~ 78 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEEFIRE 78 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHHHHHH
Confidence 3457544432 333333 3323334568899999999999999999987654332 33433 3344444
Q ss_pred HHHHHhCCCCCCchHHHHHHHhCCceEEEEEeCCCCh---hhhh----HhhccCCCCCCCcEEEEEeccH
Q 044214 106 LLSNLLKDKNVMPYIDLNFRRLGHMKVLIVFDDVTCF---SQLE----SLMGSLDWLTPVSRIILTTRNK 168 (385)
Q Consensus 106 ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~----~l~~~~~~~~~gs~ilvTtR~~ 168 (385)
+...+.. .....+++.+++-. +|++||++.. ..|+ .+...+. ..|.+||+|++..
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~~~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~ 140 (219)
T PF00308_consen 79 FADALRD-----GEIEEFKDRLRSAD-LLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRP 140 (219)
T ss_dssp HHHHHHT-----TSHHHHHHHHCTSS-EEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-
T ss_pred HHHHHHc-----ccchhhhhhhhcCC-EEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCC
Confidence 5444433 23345566666443 6789999642 2222 2222222 2466899999653
No 83
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.00 E-value=2.8e-05 Score=70.28 Aligned_cols=48 Identities=29% Similarity=0.374 Sum_probs=33.8
Q ss_pred CccccchhHHHHHHhhc-------------CCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 30 QLVGVESTVEEIESLLG-------------VESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 30 ~~vGR~~~l~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.++|.+...+++.+... ...+....+.++|++|+||||+|+.+++.+.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 37787766666553321 0123456788999999999999999998753
No 84
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.99 E-value=0.0002 Score=63.94 Aligned_cols=125 Identities=17% Similarity=0.200 Sum_probs=77.8
Q ss_pred CCCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh--CCCCceEEEeeccccccCCCChHHH
Q 044214 25 RDNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS--GDFDGSCFLENVREESQIPGGLSCL 102 (385)
Q Consensus 25 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~w~~~~~~~~~~~~~~~~l 102 (385)
|....+++|-+..+..|.+.+.. ...+....+|++|.|||+-|+.++.++- +-|++++--.+.+.... .. +
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderG----is-v 104 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERG----IS-V 104 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccc----cc-c
Confidence 34457799999999999999884 5667889999999999999999998763 34666655333333211 11 0
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHh---C---Cce-EEEEEeCCCC--hhhhhHhhccCCCCCCCcEE-EEEec
Q 044214 103 RQKLLSNLLKDKNVMPYIDLNFRRL---G---HMK-VLIVFDDVTC--FSQLESLMGSLDWLTPVSRI-ILTTR 166 (385)
Q Consensus 103 ~~~ll~~l~~~~~~~~~~~~l~~~l---~---~k~-~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~i-lvTtR 166 (385)
. .. +......+.... . .++ -.+|||+++. .+.|..+...........+. +||+-
T Consensus 105 v--------r~--Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 105 V--------RE--KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred h--------hh--hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCC
Confidence 0 00 000111111111 0 122 4789999975 46688888777765556555 44443
No 85
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.99 E-value=5.7e-05 Score=79.36 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=40.3
Q ss_pred CCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 28 KNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
-+.++||+.+++++...|... ...-+.++|.+|+|||++|..+++++..
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 356999999999999998743 2334568999999999999999998754
No 86
>PRK12377 putative replication protein; Provisional
Probab=97.98 E-value=2.8e-05 Score=69.15 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=45.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCce
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHMK 131 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~ 131 (385)
...+.++|.+|+|||.||.++++.+......+++++ ..++...+-...... .....+.+.+ .+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~-----------~~~l~~~l~~~~~~~----~~~~~~l~~l-~~~ 164 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT-----------VPDVMSRLHESYDNG----QSGEKFLQEL-CKV 164 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE-----------HHHHHHHHHHHHhcc----chHHHHHHHh-cCC
Confidence 357899999999999999999998876655566665 223333333322111 1112233333 345
Q ss_pred EEEEEeCC
Q 044214 132 VLIVFDDV 139 (385)
Q Consensus 132 ~LlVlDdv 139 (385)
=||||||+
T Consensus 165 dLLiIDDl 172 (248)
T PRK12377 165 DLLVLDEI 172 (248)
T ss_pred CEEEEcCC
Confidence 68999999
No 87
>PRK08181 transposase; Validated
Probab=97.98 E-value=5e-05 Score=68.38 Aligned_cols=99 Identities=20% Similarity=0.170 Sum_probs=54.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCceE
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHMKV 132 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~ 132 (385)
.-+.++|++|+|||.||..+++........+.|+. ..++...+..... +.. .....+.+. +.=
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-----------~~~L~~~l~~a~~----~~~-~~~~l~~l~-~~d 169 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-----------TTDLVQKLQVARR----ELQ-LESAIAKLD-KFD 169 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-----------HHHHHHHHHHHHh----CCc-HHHHHHHHh-cCC
Confidence 35899999999999999999997765544455554 2334444432211 111 112222332 334
Q ss_pred EEEEeCCCC----hhhhhHhhccCCCCCCCcEEEEEeccH
Q 044214 133 LIVFDDVTC----FSQLESLMGSLDWLTPVSRIILTTRNK 168 (385)
Q Consensus 133 LlVlDdv~~----~~~~~~l~~~~~~~~~gs~ilvTtR~~ 168 (385)
||||||+.. ......++..+.....+..+||||...
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 999999942 111122332222111123588888754
No 88
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.97 E-value=4.1e-05 Score=61.49 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=27.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
..+.|+|++|+||||+|+.++..+......++++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 47899999999999999999997766543444554
No 89
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.96 E-value=0.00016 Score=69.22 Aligned_cols=223 Identities=15% Similarity=0.116 Sum_probs=121.2
Q ss_pred hhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCC
Q 044214 36 STVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKN 115 (385)
Q Consensus 36 ~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~ 115 (385)
.-+.++.+.+... .. ++.|.|+-++||||+++.+.....+. .+++........ -..+ .+.+.
T Consensus 24 ~~~~~l~~~~~~~--~~-i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~----~~~l-~d~~~------- 85 (398)
T COG1373 24 KLLPRLIKKLDLR--PF-IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLD----RIEL-LDLLR------- 85 (398)
T ss_pred hhhHHHHhhcccC--Cc-EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcc----hhhH-HHHHH-------
Confidence 4445555555422 22 99999999999999997777665544 555552222211 1111 11111
Q ss_pred CCchHHHHHHHhCCceEEEEEeCCCChhhhhHhhccCCCCCCCcEEEEEeccHHHHhhccceecccC-----CCCCCchH
Q 044214 116 VMPYIDLNFRRLGHMKVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWRVNAFKRN-----HPDVGNEK 190 (385)
Q Consensus 116 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~~~~~~~~~~~-----~~~~~~~~ 190 (385)
.+...-..++..++||.|.....|...+..+.+.++. +|++|+-+...........+... -.+-.+.+
T Consensus 86 ------~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~E 158 (398)
T COG1373 86 ------AYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFRE 158 (398)
T ss_pred ------HHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHH
Confidence 1111111277899999999999999999888876666 88888877655443322111110 00111222
Q ss_pred H---------------HHHHHHHhCCCccchhHHhHHHHHHH-hhhccCcccchhhhhcc-ccCchhhhhhhhhcccc-C
Q 044214 191 L---------------SSNVMKYAQGVPLALKVLVWESAISK-LQRILHPSILEVLKISY-DSLEDKEKNIFLDVACF-F 252 (385)
Q Consensus 191 ~---------------~~~i~~~~~GlPLal~~~~w~~~l~~-l~~~~~~~~~~~l~~sy-~~L~~~~k~~~~~la~f-p 252 (385)
. .-+-.-.+||.|.++..-.-+..+.. +...... ++....- ... +..+..+.+++-. +
T Consensus 159 fl~~~~~~~~~~~~~~~f~~Yl~~GGfP~~v~~~~~~~~~~~~~~~~~~~---Di~~~~~~~~~-~~~k~i~~~l~~~~g 234 (398)
T COG1373 159 FLKLKGEEIEPSKLELLFEKYLETGGFPESVKADLSEKKLKEYLDTILKR---DIIERGKIENA-DLMKRILRFLASNIG 234 (398)
T ss_pred HHhhcccccchhHHHHHHHHHHHhCCCcHHHhCcchhhHHHHHHHHHHHH---HHHHHcCcccH-HHHHHHHHHHHhhcC
Confidence 2 22233457999988874310000001 1110001 1111111 111 3556666655555 5
Q ss_pred CCccHHHHHHHHH-HcCCchhhhHHHhhcCCceeEe
Q 044214 253 QGEHVDPVMKFFN-ASGFYPEIRISVLVDKPLIAIC 287 (385)
Q Consensus 253 ~~~~~~~l~~~~~-~~g~~~~~~l~~L~~~sLi~~~ 287 (385)
+.++.+.+.+.+. -+.-....+++-|.+.-++...
T Consensus 235 ~~~s~~~la~~l~~is~~Ti~~Yl~~le~~fll~~~ 270 (398)
T COG1373 235 SPISYSSLARELKGISKDTIRKYLSYLEDAFLLFLV 270 (398)
T ss_pred CccCHHHHHHHHhccchHHHHHHHHHHHHhhheEEe
Confidence 5689999999884 4444466788888888887743
No 90
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.96 E-value=7.3e-05 Score=66.33 Aligned_cols=88 Identities=13% Similarity=0.150 Sum_probs=50.9
Q ss_pred HHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCC
Q 044214 38 VEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVM 117 (385)
Q Consensus 38 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 117 (385)
+..+.+....-......+.++|.+|+|||+||..+++.+......+++++ +.++...+-..... . +
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it-----------~~~l~~~l~~~~~~-~-~- 150 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT-----------VADIMSAMKDTFSN-S-E- 150 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-----------HHHHHHHHHHHHhh-c-c-
Confidence 44444444432223457899999999999999999998765545555554 23333333322211 1 1
Q ss_pred chHHHHHHHhCCceEEEEEeCCC
Q 044214 118 PYIDLNFRRLGHMKVLIVFDDVT 140 (385)
Q Consensus 118 ~~~~~l~~~l~~k~~LlVlDdv~ 140 (385)
.....+.+.+.+ .=+||+||+.
T Consensus 151 ~~~~~~l~~l~~-~dlLvIDDig 172 (244)
T PRK07952 151 TSEEQLLNDLSN-VDLLVIDEIG 172 (244)
T ss_pred ccHHHHHHHhcc-CCEEEEeCCC
Confidence 122234444553 4478889994
No 91
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.92 E-value=5.4e-05 Score=73.53 Aligned_cols=122 Identities=16% Similarity=0.262 Sum_probs=64.9
Q ss_pred ccccchh--HHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC--ceEEEeeccccccCCCChHHHHHHH
Q 044214 31 LVGVEST--VEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFD--GSCFLENVREESQIPGGLSCLRQKL 106 (385)
Q Consensus 31 ~vGR~~~--l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~w~~~~~~~~~~~~~~~~l~~~l 106 (385)
++|.... ......+..........+.|+|..|+|||.|++++++.+..... .+++++ ..++...+
T Consensus 118 v~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~ 186 (450)
T PRK14087 118 VIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKA 186 (450)
T ss_pred cCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHH
Confidence 4565543 23333333322223356889999999999999999997654332 223332 23455555
Q ss_pred HHHHhCCCCCCchHHHHHHHhCCceEEEEEeCCCCh----hhhhHhhccCCC-CCCCcEEEEEecc
Q 044214 107 LSNLLKDKNVMPYIDLNFRRLGHMKVLIVFDDVTCF----SQLESLMGSLDW-LTPVSRIILTTRN 167 (385)
Q Consensus 107 l~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~ilvTtR~ 167 (385)
...+.... .....+.+.++. .-+||+||+... ...+.+...+.. ...|..||+|+..
T Consensus 187 ~~~l~~~~---~~~~~~~~~~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 187 VDILQKTH---KEIEQFKNEICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred HHHHHHhh---hHHHHHHHHhcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 55443211 223344444543 347888999532 122333322211 1234578888754
No 92
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00038 Score=68.28 Aligned_cols=51 Identities=25% Similarity=0.283 Sum_probs=41.6
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-..++|-+..++.|.+++..+. -.+.+.++|+.|+||||+|+.++..+.
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344679999999999999998432 345678899999999999999998753
No 93
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00027 Score=68.74 Aligned_cols=51 Identities=25% Similarity=0.389 Sum_probs=41.7
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-.+++|.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+.
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 345789999999999999997321 245688999999999999999998763
No 94
>PRK10536 hypothetical protein; Provisional
Probab=97.90 E-value=0.00011 Score=65.04 Aligned_cols=132 Identities=14% Similarity=0.213 Sum_probs=74.7
Q ss_pred CCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH-h-hCCCCceEEEeecccccc----CCCChHHH
Q 044214 29 NQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDK-I-SGDFDGSCFLENVREESQ----IPGGLSCL 102 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-~-~~~f~~~~w~~~~~~~~~----~~~~~~~l 102 (385)
..+.+|......+..++.. . ..|.+.|.+|+|||+||.+++.+ + .+.|...+.....-.... .|.+..+-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--K--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--C--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 4567788888888888873 2 38999999999999999999874 4 445554443321111100 11222221
Q ss_pred HHHHHHH----HhCCCCCCchHHHH------------HHHhCCce---EEEEEeCCCC--hhhhhHhhccCCCCCCCcEE
Q 044214 103 RQKLLSN----LLKDKNVMPYIDLN------------FRRLGHMK---VLIVFDDVTC--FSQLESLMGSLDWLTPVSRI 161 (385)
Q Consensus 103 ~~~ll~~----l~~~~~~~~~~~~l------------~~~l~~k~---~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~i 161 (385)
..-.+.. +..-.. ....+.+ ..+++++. -++|+|.+.+ ..+...++... +.+|++
T Consensus 131 ~~p~~~pi~D~L~~~~~-~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g~~sk~ 206 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLG-ASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---GENVTV 206 (262)
T ss_pred HHHHHHHHHHHHHHHhC-hHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc---CCCCEE
Confidence 1111111 111000 0111111 12455655 4999999964 45566666554 589999
Q ss_pred EEEeccH
Q 044214 162 ILTTRNK 168 (385)
Q Consensus 162 lvTtR~~ 168 (385)
|+|--..
T Consensus 207 v~~GD~~ 213 (262)
T PRK10536 207 IVNGDIT 213 (262)
T ss_pred EEeCChh
Confidence 9987543
No 95
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.90 E-value=6.9e-05 Score=73.22 Aligned_cols=120 Identities=17% Similarity=0.211 Sum_probs=63.9
Q ss_pred ccccchh--HHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCc--eEEEeeccccccCCCChHHHHHHH
Q 044214 31 LVGVEST--VEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDG--SCFLENVREESQIPGGLSCLRQKL 106 (385)
Q Consensus 31 ~vGR~~~--l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~w~~~~~~~~~~~~~~~~l~~~l 106 (385)
.+|.... ......+..........+.|+|.+|+|||.|++.+++.+...++. ++++. ...+...+
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-----------~~~~~~~~ 193 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-----------SEKFTNDF 193 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHH
Confidence 4465543 233444433322234568999999999999999999988766533 33333 22333334
Q ss_pred HHHHhCCCCCCchHHHHHHHhCCceEEEEEeCCCCh---h-hhhHhhccCCC-CCCCcEEEEEecc
Q 044214 107 LSNLLKDKNVMPYIDLNFRRLGHMKVLIVFDDVTCF---S-QLESLMGSLDW-LTPVSRIILTTRN 167 (385)
Q Consensus 107 l~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~-~~~~l~~~~~~-~~~gs~ilvTtR~ 167 (385)
...+.. .....+.+.+++ .-+|+|||++.. . ..+.++..+.. ...|..+++||..
T Consensus 194 ~~~~~~-----~~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~ 253 (450)
T PRK00149 194 VNALRN-----NTMEEFKEKYRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDR 253 (450)
T ss_pred HHHHHc-----CcHHHHHHHHhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 333322 122344444443 448899999532 1 12223221110 1234557777764
No 96
>PRK06921 hypothetical protein; Provisional
Probab=97.90 E-value=3.5e-05 Score=69.57 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=29.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGD-FDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~~ 87 (385)
...+.++|.+|+|||.||.++++.+..+ ...++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4578999999999999999999987655 45566665
No 97
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00027 Score=69.46 Aligned_cols=50 Identities=26% Similarity=0.315 Sum_probs=41.1
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..-.+++|-+...+.|...+..+ .-.+++.++|+.|+||||+|+.+++.+
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 34477999999999999998743 234567899999999999999999875
No 98
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00015 Score=72.31 Aligned_cols=51 Identities=27% Similarity=0.281 Sum_probs=41.8
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-.+++|.+..++.|.+++..+ .-.+.+.++|+.|+||||+|+.+++.+.
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34478999999999999999842 2344678999999999999999998764
No 99
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.89 E-value=5e-05 Score=74.20 Aligned_cols=55 Identities=24% Similarity=0.381 Sum_probs=41.9
Q ss_pred CCCCCCccccchhHHHHHHhhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 25 RDNKNQLVGVESTVEEIESLLGV-----------ESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 25 ~~~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
...-..+.|.+..++++.+.+.. +-..++-+.++|++|+|||++|+.+++.+...
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 33446688899999998887531 11235678999999999999999999987554
No 100
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00011 Score=76.16 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=41.7
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-.++||.+..++.|.+++..+ .-.+.+.++|..|+||||+|+.+++.+.
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSG-RINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34467999999999999999842 2235688999999999999999998764
No 101
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.87 E-value=3.4e-05 Score=73.51 Aligned_cols=100 Identities=19% Similarity=0.194 Sum_probs=62.4
Q ss_pred CCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC--CCCceEEEeeccccccCCCChHHHHHHH
Q 044214 29 NQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG--DFDGSCFLENVREESQIPGGLSCLRQKL 106 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~w~~~~~~~~~~~~~~~~l~~~l 106 (385)
.++++.++.++.+...|... +.+.++|++|+|||++|+.+++.+.. .|..+.|+. ..+. .+..++....
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHps-ySYeDFI~G~ 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQS-YSYEDFIQGY 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----eccc-ccHHHHhccc
Confidence 45778888999999888732 36788999999999999999997743 455666666 2222 4444333211
Q ss_pred HHHHhCCCCCC-----chHHHHHHHhC--CceEEEEEeCCCC
Q 044214 107 LSNLLKDKNVM-----PYIDLNFRRLG--HMKVLIVFDDVTC 141 (385)
Q Consensus 107 l~~l~~~~~~~-----~~~~~l~~~l~--~k~~LlVlDdv~~ 141 (385)
.+..... -..+.+..... +++++||+|+++.
T Consensus 246 ----rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 246 ----RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred ----CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhc
Confidence 1111111 11222222222 4689999999964
No 102
>PRK09183 transposase/IS protein; Provisional
Probab=97.87 E-value=6.1e-05 Score=67.75 Aligned_cols=34 Identities=24% Similarity=0.151 Sum_probs=25.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFL 86 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 86 (385)
..+.|+|++|+|||+||..++.........+.++
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4678999999999999999988654333333344
No 103
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.86 E-value=0.00026 Score=72.83 Aligned_cols=46 Identities=28% Similarity=0.350 Sum_probs=38.6
Q ss_pred CCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 29 NQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
+.++||+.+++++...|.... ..-+.++|.+|+|||++|+.+++++
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999888522 2345689999999999999999875
No 104
>PRK06526 transposase; Provisional
Probab=97.83 E-value=2.7e-05 Score=69.66 Aligned_cols=33 Identities=21% Similarity=0.130 Sum_probs=25.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEE
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCF 85 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w 85 (385)
.-+.|+|++|+|||+||..+.......-..+.|
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 468999999999999999999876443333334
No 105
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.83 E-value=2.3e-05 Score=66.28 Aligned_cols=36 Identities=28% Similarity=0.258 Sum_probs=26.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
..-+.++|.+|+|||.||..+++.+..+-..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 356899999999999999999987654444456665
No 106
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.82 E-value=0.00012 Score=70.53 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=63.0
Q ss_pred ccccchhHH--HHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC--ceEEEeeccccccCCCChHHHHHHH
Q 044214 31 LVGVESTVE--EIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFD--GSCFLENVREESQIPGGLSCLRQKL 106 (385)
Q Consensus 31 ~vGR~~~l~--~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~w~~~~~~~~~~~~~~~~l~~~l 106 (385)
++|.+.... .+..+..........+.|+|.+|+|||.|++.+++.+.+..+ .++++. ...+...+
T Consensus 113 i~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-----------~~~~~~~~ 181 (405)
T TIGR00362 113 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-----------SEKFTNDF 181 (405)
T ss_pred ccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-----------HHHHHHHH
Confidence 457655432 233333322222456889999999999999999998766543 233443 12333334
Q ss_pred HHHHhCCCCCCchHHHHHHHhCCceEEEEEeCCCChh----hhhHhhccCCC-CCCCcEEEEEecc
Q 044214 107 LSNLLKDKNVMPYIDLNFRRLGHMKVLIVFDDVTCFS----QLESLMGSLDW-LTPVSRIILTTRN 167 (385)
Q Consensus 107 l~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~ilvTtR~ 167 (385)
...+... ....+.+.+++ .-+|+|||++... ..+.++..+.. ...+..+|+|+..
T Consensus 182 ~~~~~~~-----~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~ 241 (405)
T TIGR00362 182 VNALRNN-----KMEEFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDR 241 (405)
T ss_pred HHHHHcC-----CHHHHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 4433321 12334444443 3478899996321 11223222211 1234567777754
No 107
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.80 E-value=0.00012 Score=74.06 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=40.2
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..-+.++|++..+..+.+.+. ......+.|+|++|+||||+|+.+++..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia--~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVA--SPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 344679999999999888776 3345579999999999999999998755
No 108
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.0007 Score=67.68 Aligned_cols=50 Identities=20% Similarity=0.225 Sum_probs=41.9
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..-.+++|.+...+.|.+++..+. -.+.+.++|+.|+|||++|+.+++.+
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445789999999999999998432 34567889999999999999999865
No 109
>CHL00181 cbbX CbbX; Provisional
Probab=97.78 E-value=0.00053 Score=62.64 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=21.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..+.++|.+|+|||++|+.+++...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999998653
No 110
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.78 E-value=6.8e-05 Score=69.57 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=28.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.-+.++|.+|+|||.||..+++.+...-..+++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56999999999999999999998765545566665
No 111
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00068 Score=67.63 Aligned_cols=51 Identities=29% Similarity=0.307 Sum_probs=42.3
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-.+++|-+..+++|..++..+ .-.+.+.++|+.|+||||+|+.+++.+-
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 34578999999999999999842 2345788999999999999999998753
No 112
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.76 E-value=0.00022 Score=68.08 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=41.8
Q ss_pred CCCCCCCccccchhHHHHHHhhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 24 PRDNKNQLVGVESTVEEIESLLGV-----------ESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 24 ~~~~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
|...-.++.|.+...+++.+.+.. +-..++-+.++|++|+|||+||+.+++.....
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~ 206 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT 206 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 334445688999888888876531 11346789999999999999999999876443
No 113
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=0.00023 Score=67.08 Aligned_cols=124 Identities=17% Similarity=0.257 Sum_probs=82.8
Q ss_pred HHHHHHHhhccCCCCCCCCCCccccchhHHHHHHhhcC--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCc--eEE
Q 044214 10 VVNHILKRLDEVFRPRDNKNQLVGVESTVEEIESLLGV--ESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDG--SCF 85 (385)
Q Consensus 10 i~~~v~~~l~~~~~~~~~~~~~vGR~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~w 85 (385)
+.+.....+.. ...+..++||+.+++.+.+++.. ..+....+-|.|.+|.|||.+...++.+....... ++.
T Consensus 135 ~~~~~~~~l~~----t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~ 210 (529)
T KOG2227|consen 135 ISEQRSESLLN----TAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVY 210 (529)
T ss_pred HHHHHHHHHHh----cCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEE
Confidence 44445555554 34567899999999999999874 34556788899999999999999999877655433 345
Q ss_pred EeeccccccCCCChHHHHHHHHHHH----hCCCCCCchHHHHHHHhCC--ceEEEEEeCCCCh
Q 044214 86 LENVREESQIPGGLSCLRQKLLSNL----LKDKNVMPYIDLNFRRLGH--MKVLIVFDDVTCF 142 (385)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~ll~~l----~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~ 142 (385)
+.+.. . ....+++..|...+ .....+.+....+...... ..+|+|+|.++..
T Consensus 211 inc~s-l----~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L 268 (529)
T KOG2227|consen 211 INCTS-L----TEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHL 268 (529)
T ss_pred Eeecc-c----cchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHH
Confidence 54221 1 44556666666665 2333233455555555544 3699999999753
No 114
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.75 E-value=0.00017 Score=67.29 Aligned_cols=99 Identities=15% Similarity=0.127 Sum_probs=63.0
Q ss_pred HHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC-Cce-EEEeeccccccCCCChHHHHHHHHHHHhCCCC
Q 044214 38 VEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDF-DGS-CFLENVREESQIPGGLSCLRQKLLSNLLKDKN 115 (385)
Q Consensus 38 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~-~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~ 115 (385)
..++.+.+.+- ++-+.+.|+|.+|+|||||++.+++.+.... +.. +|+. +. ..+....++++.+...+.....
T Consensus 120 ~~RvID~l~Pi-GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~l-Ig---ER~~EV~df~~~i~~~Vvast~ 194 (380)
T PRK12608 120 SMRVVDLVAPI-GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLL-ID---ERPEEVTDMRRSVKGEVYASTF 194 (380)
T ss_pred hHhhhhheeec-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEE-ec---CCCCCHHHHHHHHhhhEEeecC
Confidence 34466666642 2335679999999999999999999876554 333 3443 33 2336788888888776665432
Q ss_pred CC------c---hHHHHHHHh--CCceEEEEEeCCCC
Q 044214 116 VM------P---YIDLNFRRL--GHMKVLIVFDDVTC 141 (385)
Q Consensus 116 ~~------~---~~~~l~~~l--~~k~~LlVlDdv~~ 141 (385)
+. . ....+.+++ .+++++||+|++..
T Consensus 195 de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 195 DRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 11 1 111222222 47999999999953
No 115
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.75 E-value=0.00023 Score=73.77 Aligned_cols=114 Identities=15% Similarity=0.187 Sum_probs=65.0
Q ss_pred CCCccccchhHHHHHHhhcC------CCC-CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChH
Q 044214 28 KNQLVGVESTVEEIESLLGV------ESK-GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLS 100 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~~L~~------~~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~ 100 (385)
...++|-+..++.+.+.+.. ..+ ...++.++|++|+|||.||+.+++.+.. ..+.+. ..+.... ....
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~---~~~~~d-~se~~~~-~~~~ 527 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV---HLERFD-MSEYMEK-HTVS 527 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC---CeEEEe-Cchhhhc-ccHH
Confidence 35688999999988887652 112 2346889999999999999999987632 233333 2221111 1111
Q ss_pred HHHHHHHHHHhCCCC--CCchHHHHHHHhCC-ceEEEEEeCCC--ChhhhhHhhccCC
Q 044214 101 CLRQKLLSNLLKDKN--VMPYIDLNFRRLGH-MKVLIVFDDVT--CFSQLESLMGSLD 153 (385)
Q Consensus 101 ~l~~~ll~~l~~~~~--~~~~~~~l~~~l~~-k~~LlVlDdv~--~~~~~~~l~~~~~ 153 (385)
.+ ++.+.. ..+....+.+.++. ...+++||+++ +.+.+..|+..+.
T Consensus 528 ~l-------ig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 528 RL-------IGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred HH-------hcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 11 111111 11222334444443 34699999997 4455566655543
No 116
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.00012 Score=65.67 Aligned_cols=73 Identities=25% Similarity=0.237 Sum_probs=45.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCc
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHM 130 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k 130 (385)
+..-+.++|.+|+|||.||.++.+.+...--.+.|+. ..++..++....... .....+.+.+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~-----------~~el~~~Lk~~~~~~----~~~~~l~~~l~~- 167 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT-----------APDLLSKLKAAFDEG----RLEEKLLRELKK- 167 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhcC----chHHHHHHHhhc-
Confidence 4456889999999999999999998874434455554 234444444433321 222233333332
Q ss_pred eEEEEEeCC
Q 044214 131 KVLIVFDDV 139 (385)
Q Consensus 131 ~~LlVlDdv 139 (385)
-=||||||+
T Consensus 168 ~dlLIiDDl 176 (254)
T COG1484 168 VDLLIIDDI 176 (254)
T ss_pred CCEEEEecc
Confidence 248899999
No 117
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00025 Score=64.75 Aligned_cols=124 Identities=18% Similarity=0.360 Sum_probs=77.5
Q ss_pred CCccccchhHHHHHHhhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCC
Q 044214 29 NQLVGVESTVEEIESLLGV-----------ESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPG 97 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~ 97 (385)
...=|-++.+++|.+.... +=+.++-|.+||++|.|||-||++++++....| +..++
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----Irvvg------- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVG------- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEecc-------
Confidence 4455788889888887642 124577899999999999999999999765443 33111
Q ss_pred ChHHHHHHHHHHHhCCCCCCchHHHHHHHhC-CceEEEEEeCCCCh----------------hhhhHhhccCCCCC--CC
Q 044214 98 GLSCLRQKLLSNLLKDKNVMPYIDLNFRRLG-HMKVLIVFDDVTCF----------------SQLESLMGSLDWLT--PV 158 (385)
Q Consensus 98 ~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~~--~g 158 (385)
.++.....++.. .+...+.+.-+ ..++.|++|.++.. ..+-+|+..+..+. .+
T Consensus 219 ------SElVqKYiGEGa--RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 219 ------SELVQKYIGEGA--RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred ------HHHHHHHhccch--HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 122233323222 44444555544 47899999999621 11445555555443 35
Q ss_pred cEEEEEeccHHHHh
Q 044214 159 SRIILTTRNKQVLR 172 (385)
Q Consensus 159 s~ilvTtR~~~~~~ 172 (385)
-+||..|...+.+.
T Consensus 291 vKVI~ATNR~D~LD 304 (406)
T COG1222 291 VKVIMATNRPDILD 304 (406)
T ss_pred eEEEEecCCccccC
Confidence 68888887665544
No 118
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.74 E-value=6.1e-05 Score=75.52 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=42.8
Q ss_pred CCCCCCccccchhHHHHHHhhcCCC---CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 25 RDNKNQLVGVESTVEEIESLLGVES---KGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 25 ~~~~~~~vGR~~~l~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
|..-++++|-+..++++..++.... ...+++.|+|++|+||||+++.++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4455779999999999999987422 3346799999999999999999998653
No 119
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.00041 Score=64.14 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=39.7
Q ss_pred CCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 29 NQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.+++|.+...+.+.+.+..+ .-.+...++|+.|+||+++|..+++.+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999998842 225789999999999999999999865
No 120
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.73 E-value=0.0002 Score=65.92 Aligned_cols=118 Identities=14% Similarity=0.205 Sum_probs=66.0
Q ss_pred ccchhHHHHHHhhcCCC--CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHH
Q 044214 33 GVESTVEEIESLLGVES--KGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNL 110 (385)
Q Consensus 33 GR~~~l~~l~~~L~~~~--~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l 110 (385)
+|....+...+++..-. ...+-+.|+|..|+|||.||.++++.+...-..+.|+. ...+...+....
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-----------~~~l~~~lk~~~ 203 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-----------FPEFIRELKNSI 203 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-----------HHHHHHHHHHHH
Confidence 44444555555555211 13457899999999999999999998765544455665 123444443333
Q ss_pred hCCCCCCchHHHHHHHhCCceEEEEEeCCC--Chhhhh--HhhccC-CCC-CCCcEEEEEecc
Q 044214 111 LKDKNVMPYIDLNFRRLGHMKVLIVFDDVT--CFSQLE--SLMGSL-DWL-TPVSRIILTTRN 167 (385)
Q Consensus 111 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~--~l~~~~-~~~-~~gs~ilvTtR~ 167 (385)
... . .....+.+. +.=||||||+- ....|. .++..+ ... ..+..+|+||--
T Consensus 204 ~~~----~-~~~~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 204 SDG----S-VKEKIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred hcC----c-HHHHHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 211 1 122233333 44589999993 334443 243332 111 234567888864
No 121
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.73 E-value=0.0002 Score=61.43 Aligned_cols=48 Identities=29% Similarity=0.317 Sum_probs=40.6
Q ss_pred CCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 28 KNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
-.+.||-++.++.+.-.-. +++++-+.|.||+|+||||-+..+++.+-
T Consensus 26 l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred HHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 3568999999998887766 56678899999999999999999998753
No 122
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.73 E-value=0.00047 Score=64.31 Aligned_cols=124 Identities=19% Similarity=0.157 Sum_probs=74.1
Q ss_pred CccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC---------------------CceEEEee
Q 044214 30 QLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDF---------------------DGSCFLEN 88 (385)
Q Consensus 30 ~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~w~~~ 88 (385)
.++|-+....++..+..........+.++|++|+||||+|..+++.+.... +.+..+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 467777888888888774333344599999999999999999999765332 2333332
Q ss_pred ccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCceEEEEEeCCCCh--hhhhHhhccCCCCCCCcEEEEEec
Q 044214 89 VREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHMKVLIVFDDVTCF--SQLESLMGSLDWLTPVSRIILTTR 166 (385)
Q Consensus 89 ~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR 166 (385)
....... .-..+..+++......... .++.-++++|+++.. +....++..+......+.+|++|.
T Consensus 81 ~s~~~~~-~i~~~~vr~~~~~~~~~~~------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 81 PSDLRKI-DIIVEQVRELAEFLSESPL------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred ccccCCC-cchHHHHHHHHHHhccCCC------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 1111000 0122233333332222110 356789999999754 445666666555567778877776
Q ss_pred c
Q 044214 167 N 167 (385)
Q Consensus 167 ~ 167 (385)
.
T Consensus 148 ~ 148 (325)
T COG0470 148 D 148 (325)
T ss_pred C
Confidence 4
No 123
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.00062 Score=69.02 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=41.4
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..-.+++|-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34467999999999999999842 235567899999999999999999865
No 124
>PRK09087 hypothetical protein; Validated
Probab=97.72 E-value=0.00031 Score=61.83 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.+.+.|+|.+|+|||+|++.+++..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc
Confidence 3568999999999999999888753
No 125
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00036 Score=70.08 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=41.7
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-.+++|-+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+.
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578999999999999988732 2245688999999999999999998763
No 126
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.71 E-value=0.0002 Score=71.04 Aligned_cols=96 Identities=19% Similarity=0.278 Sum_probs=55.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCC--ceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCc
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFD--GSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHM 130 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k 130 (385)
..+.|+|..|+|||.|++.+++.+...+. .++++. ..++...+...+.. .....+++.+++-
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el~~al~~-----~~~~~f~~~y~~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEFINSIRD-----GKGDSFRRRYREM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHh-----ccHHHHHHHhhcC
Confidence 45899999999999999999998765432 233433 23333344333322 1123344444443
Q ss_pred eEEEEEeCCCCh---hh----hhHhhccCCCCCCCcEEEEEecc
Q 044214 131 KVLIVFDDVTCF---SQ----LESLMGSLDWLTPVSRIILTTRN 167 (385)
Q Consensus 131 ~~LlVlDdv~~~---~~----~~~l~~~~~~~~~gs~ilvTtR~ 167 (385)
=+|||||+... +. +-.++..+. ..|..|||||..
T Consensus 379 -DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~ 419 (617)
T PRK14086 379 -DILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDR 419 (617)
T ss_pred -CEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCC
Confidence 47888999532 11 222222222 235668888875
No 127
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.71 E-value=0.00013 Score=63.04 Aligned_cols=109 Identities=12% Similarity=0.077 Sum_probs=64.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCceEE
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHMKVL 133 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~L 133 (385)
+|.|+|+.|+||||++..+...+.......++...-...... ... ..+..+...........+.++..++..+=.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~-~~~----~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ 77 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVH-ESK----RSLINQREVGLDTLSFENALKAALRQDPDV 77 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccc-cCc----cceeeecccCCCccCHHHHHHHHhcCCcCE
Confidence 789999999999999999888776554545444311100000 000 011111000011124566777888878889
Q ss_pred EEEeCCCChhhhhHhhccCCCCCCCcEEEEEeccHHH
Q 044214 134 IVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQV 170 (385)
Q Consensus 134 lVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~ 170 (385)
+++|.+.+.+.+...+... ..|..++.|+...+.
T Consensus 78 ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 78 ILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred EEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 9999998777766555432 245567777765443
No 128
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.71 E-value=0.00024 Score=74.54 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=74.1
Q ss_pred CCccccchhHHHHHHhhcC------CCC-CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHH
Q 044214 29 NQLVGVESTVEEIESLLGV------ESK-GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSC 101 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~------~~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~ 101 (385)
..++|-+..++.+.+.+.. ..+ ....+.++|+.|+|||+||+.+++.+-..-...+-+. .++.... ..+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~~-~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSEYMEK-HTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chhcccc-ccHHH
Confidence 5689999999999887652 112 2346779999999999999999987643322222232 2221111 11211
Q ss_pred HHHHHHHHHhCCCC--CCchHHHHHHHhCCce-EEEEEeCCC--ChhhhhHhhccCCCC-----------CCCcEEEEEe
Q 044214 102 LRQKLLSNLLKDKN--VMPYIDLNFRRLGHMK-VLIVFDDVT--CFSQLESLMGSLDWL-----------TPVSRIILTT 165 (385)
Q Consensus 102 l~~~ll~~l~~~~~--~~~~~~~l~~~l~~k~-~LlVlDdv~--~~~~~~~l~~~~~~~-----------~~gs~ilvTt 165 (385)
+ ++.+.. ..+....+.+.++.++ .+++||+++ +.+.+..|+..+..+ ..++.+|+||
T Consensus 587 l-------~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Ts 659 (821)
T CHL00095 587 L-------IGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTS 659 (821)
T ss_pred h-------cCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeC
Confidence 1 111110 1122234455555555 589999996 445566666555432 1345677777
Q ss_pred cc
Q 044214 166 RN 167 (385)
Q Consensus 166 R~ 167 (385)
..
T Consensus 660 n~ 661 (821)
T CHL00095 660 NL 661 (821)
T ss_pred Cc
Confidence 64
No 129
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00082 Score=67.83 Aligned_cols=52 Identities=25% Similarity=0.254 Sum_probs=42.4
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
..-..++|.+...+.|..++..+. -.+.+.++|..|+||||+|+.+++.+..
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 344679999999999999988432 2357889999999999999999997643
No 130
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.70 E-value=0.00027 Score=74.32 Aligned_cols=130 Identities=18% Similarity=0.212 Sum_probs=73.4
Q ss_pred CCCccccchhHHHHHHhhcCC------CC-CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChH
Q 044214 28 KNQLVGVESTVEEIESLLGVE------SK-GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLS 100 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~ 100 (385)
...++|.+..++.+...+... .+ ...++.++|++|+|||++|+.+++.+...-...+.+. .++.... ...
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d-~s~~~~~-~~~- 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID-MSEYMEK-HSV- 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe-chhhccc-chH-
Confidence 346899999999998887631 11 2457889999999999999999987644333333332 2211111 111
Q ss_pred HHHHHHHHHHhCCCCC---CchHHHHHHHhCCc-eEEEEEeCCC--ChhhhhHhhccCCCC-----------CCCcEEEE
Q 044214 101 CLRQKLLSNLLKDKNV---MPYIDLNFRRLGHM-KVLIVFDDVT--CFSQLESLMGSLDWL-----------TPVSRIIL 163 (385)
Q Consensus 101 ~l~~~ll~~l~~~~~~---~~~~~~l~~~l~~k-~~LlVlDdv~--~~~~~~~l~~~~~~~-----------~~gs~ilv 163 (385)
..+.+..+. .+....+...++.+ ..+|+||+++ +.+.+..|+..+... -.++.||+
T Consensus 641 -------~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~ 713 (852)
T TIGR03346 641 -------ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIM 713 (852)
T ss_pred -------HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEE
Confidence 112111111 11112333333333 3599999996 445566666555322 12344777
Q ss_pred Eecc
Q 044214 164 TTRN 167 (385)
Q Consensus 164 TtR~ 167 (385)
||..
T Consensus 714 TSn~ 717 (852)
T TIGR03346 714 TSNL 717 (852)
T ss_pred eCCc
Confidence 8764
No 131
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.70 E-value=0.00013 Score=70.20 Aligned_cols=54 Identities=26% Similarity=0.429 Sum_probs=41.6
Q ss_pred CCCCccccchhHHHHHHhhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 27 NKNQLVGVESTVEEIESLLGV-----------ESKGVYALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 27 ~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
.-.++.|.+..++++.+.+.. +-...+-+.++|++|+|||++|+.+++.....|
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f 245 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF 245 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 335678999999999887641 112355788999999999999999999876544
No 132
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.70 E-value=9.1e-05 Score=65.08 Aligned_cols=36 Identities=25% Similarity=0.460 Sum_probs=31.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEee
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLEN 88 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~ 88 (385)
-.++|.|.+|+|||||...+.......|..+++++.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence 357799999999999999999999999987777753
No 133
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00042 Score=69.09 Aligned_cols=50 Identities=24% Similarity=0.262 Sum_probs=40.8
Q ss_pred CCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 27 NKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 27 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.-.+++|-+..++.|.+.+..+ .-.+.+.++|+.|+||||+|+.+++.+.
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 4467899998888899888742 2256788999999999999999998763
No 134
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.69 E-value=0.00041 Score=67.28 Aligned_cols=99 Identities=14% Similarity=0.203 Sum_probs=54.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCce
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHMK 131 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~ 131 (385)
...+.|+|..|+|||+|++.+++.+......++++. ...+...+...+... ....++..++. .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~~-----~~~~f~~~~~~-~ 203 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRSG-----EMQRFRQFYRN-V 203 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhcc-----hHHHHHHHccc-C
Confidence 356889999999999999999998765434444444 122333333333221 12334444443 4
Q ss_pred EEEEEeCCCChh----hhhHhhccCCC-CCCCcEEEEEecc
Q 044214 132 VLIVFDDVTCFS----QLESLMGSLDW-LTPVSRIILTTRN 167 (385)
Q Consensus 132 ~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~ilvTtR~ 167 (385)
-+|++||+.... ..+.++..+.. ...|..||+||..
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 478889985321 12222222110 0135578888854
No 135
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.68 E-value=0.00027 Score=74.14 Aligned_cols=114 Identities=16% Similarity=0.205 Sum_probs=64.7
Q ss_pred CCccccchhHHHHHHhhcCC------CC-CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHH
Q 044214 29 NQLVGVESTVEEIESLLGVE------SK-GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSC 101 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~ 101 (385)
..++|.+..++.+...+... .+ ...++.++|+.|+|||++|+.+++.+.......+.+. ..+...
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id-~se~~~------- 639 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID-MSEFME------- 639 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE-hHHhhh-------
Confidence 46899999999888877521 12 2347889999999999999999986643333333333 211100
Q ss_pred HHHHHHHHHhCCCCCC---chHHHHHHHhCCc-eEEEEEeCCC--ChhhhhHhhccC
Q 044214 102 LRQKLLSNLLKDKNVM---PYIDLNFRRLGHM-KVLIVFDDVT--CFSQLESLMGSL 152 (385)
Q Consensus 102 l~~~ll~~l~~~~~~~---~~~~~l~~~l~~k-~~LlVlDdv~--~~~~~~~l~~~~ 152 (385)
......+.+..+.. +....+...++.+ .-+|+||+++ +...+..++..+
T Consensus 640 --~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~il 694 (857)
T PRK10865 640 --KHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL 694 (857)
T ss_pred --hhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHH
Confidence 11112222222111 1112233333333 3699999996 455566665544
No 136
>CHL00176 ftsH cell division protein; Validated
Probab=97.67 E-value=0.00024 Score=71.68 Aligned_cols=48 Identities=29% Similarity=0.381 Sum_probs=35.7
Q ss_pred CCccccchhHHHHHHhh---cCC-------CCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 29 NQLVGVESTVEEIESLL---GVE-------SKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L---~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.+++|.++..+++.+.+ ... ....+-|.++|++|+|||+||+.++...
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56889887777666554 221 1224569999999999999999999865
No 137
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.66 E-value=8.4e-05 Score=60.18 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 044214 55 LGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 55 v~I~G~gGiGKTtLA~~~~~~~ 76 (385)
|.|+|.+|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 138
>PRK08118 topology modulation protein; Reviewed
Probab=97.66 E-value=6.7e-05 Score=62.82 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=27.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC---CCCceEEE
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISG---DFDGSCFL 86 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~---~f~~~~w~ 86 (385)
+.|.|+|++|+||||||+.+++.+.- +|+..+|-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 36899999999999999999997643 36666654
No 139
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.0014 Score=61.61 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=28.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
+.++|+|+|.+|+||||++..++..+...-..+.++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4579999999999999999999987654433344444
No 140
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.65 E-value=0.00035 Score=63.79 Aligned_cols=49 Identities=22% Similarity=0.361 Sum_probs=32.8
Q ss_pred CccccchhHHHHHHhhc---C---------C-CCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 30 QLVGVESTVEEIESLLG---V---------E-SKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 30 ~~vGR~~~l~~l~~~L~---~---------~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.++|-++..+++.++.. . . ......+.++|.+|+|||++|+.+++.+..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHR 84 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 36887766666554321 0 0 112236889999999999999999886543
No 141
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.64 E-value=0.0004 Score=72.70 Aligned_cols=51 Identities=24% Similarity=0.382 Sum_probs=39.6
Q ss_pred CCccccchhHHHHHHhhcC-------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 29 NQLVGVESTVEEIESLLGV-------ESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
..++|-+..++.+.+.+.. ++....++.++|++|+|||.||+.+++.+-..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 4689999999988887642 12234578999999999999999999876433
No 142
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.64 E-value=0.00019 Score=64.38 Aligned_cols=89 Identities=18% Similarity=0.201 Sum_probs=58.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhC--------CCCCC-----
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLK--------DKNVM----- 117 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~--------~~~~~----- 117 (385)
+-+.++|.|.+|+|||+|++.+++.++.+|+..+++..+++.. ..+.++...+...-.. ..++.
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~---~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERT---REGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc---HHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 3467999999999999999999999887887777776554432 4456666666543111 11111
Q ss_pred ---chHHHHHHHh---CCceEEEEEeCCCCh
Q 044214 118 ---PYIDLNFRRL---GHMKVLIVFDDVTCF 142 (385)
Q Consensus 118 ---~~~~~l~~~l---~~k~~LlVlDdv~~~ 142 (385)
...-.+.+++ +++.+|+++||+...
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 1122233343 389999999999543
No 143
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.63 E-value=0.00096 Score=55.53 Aligned_cols=121 Identities=19% Similarity=0.197 Sum_probs=68.4
Q ss_pred ccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC--------------------CCCceEEEeecccc
Q 044214 33 GVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG--------------------DFDGSCFLENVREE 92 (385)
Q Consensus 33 GR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--------------------~f~~~~w~~~~~~~ 92 (385)
|-+...+.|.+.+..+ .-+..+.++|..|+||+++|..+++.+-. ..+...|+.....
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-
Confidence 4556677777777732 23456899999999999999999986521 2334444431111
Q ss_pred ccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCceEEEEEeCCCC--hhhhhHhhccCCCCCCCcEEEEEeccHH
Q 044214 93 SQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHMKVLIVFDDVTC--FSQLESLMGSLDWLTPVSRIILTTRNKQ 169 (385)
Q Consensus 93 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ilvTtR~~~ 169 (385)
... ..+.++. .+...+.... ..++.=++|+||++. .+....|+..+..-..++.+|++|.+.+
T Consensus 79 ~~~-i~i~~ir-~i~~~~~~~~------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 79 KKS-IKIDQIR-EIIEFLSLSP------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSS-BSHHHHH-HHHHHCTSS-------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred cch-hhHHHHH-HHHHHHHHHH------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 000 1222211 2222221111 124567899999974 4556777766655557888888887653
No 144
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.0013 Score=66.38 Aligned_cols=51 Identities=27% Similarity=0.340 Sum_probs=41.7
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-.+++|.+...+.|.+++..+ .-.+.+.++|+.|+||||+|+.+++.+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34478999999999999999842 2345688999999999999999998763
No 145
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00046 Score=70.05 Aligned_cols=127 Identities=18% Similarity=0.226 Sum_probs=81.8
Q ss_pred CCccccchhHHHHHHhhcC-------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHH
Q 044214 29 NQLVGVESTVEEIESLLGV-------ESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSC 101 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~ 101 (385)
...+|-+..+..+.+.+.. ++....+....|+.|||||-||++++..+-+.=+..+-+ ++.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-----------DMSE 559 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-----------DMSE 559 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-----------chHH
Confidence 4689999999998887752 223356778899999999999999998764332333333 2222
Q ss_pred HHH-HHHHHHhCCCCCC---chHHHHHHHhCCceE-EEEEeCCC--ChhhhhHhhccCCCC----C-------CCcEEEE
Q 044214 102 LRQ-KLLSNLLKDKNVM---PYIDLNFRRLGHMKV-LIVFDDVT--CFSQLESLMGSLDWL----T-------PVSRIIL 163 (385)
Q Consensus 102 l~~-~ll~~l~~~~~~~---~~~~~l~~~l~~k~~-LlVlDdv~--~~~~~~~l~~~~~~~----~-------~gs~ilv 163 (385)
... .-.+.+.+..+.. +--..|-+..+.+|| +|.||.++ +++.++-|+..+.++ + .++-||+
T Consensus 560 y~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIIm 639 (786)
T COG0542 560 YMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIM 639 (786)
T ss_pred HHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEE
Confidence 222 2234444444422 334556666777876 88999996 667777777766543 1 2455677
Q ss_pred Eec
Q 044214 164 TTR 166 (385)
Q Consensus 164 TtR 166 (385)
||.
T Consensus 640 TSN 642 (786)
T COG0542 640 TSN 642 (786)
T ss_pred ecc
Confidence 775
No 146
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.61 E-value=0.00048 Score=59.19 Aligned_cols=127 Identities=17% Similarity=0.155 Sum_probs=61.5
Q ss_pred cchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH-h-hCCCCceEEEeeccccccC----CCChHH----HH
Q 044214 34 VESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDK-I-SGDFDGSCFLENVREESQI----PGGLSC----LR 103 (385)
Q Consensus 34 R~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-~-~~~f~~~~w~~~~~~~~~~----~~~~~~----l~ 103 (385)
+..+-....+.|. ...++.+.|++|.|||.||.+.+-+ + ..+|+..++....-+.... |.+..+ ..
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 4445555555555 2348999999999999999998853 3 4678877777643221110 011100 01
Q ss_pred HHHHHHHhCCCCCCchHHHHH----------HHhCCc---eEEEEEeCCC--ChhhhhHhhccCCCCCCCcEEEEEeccH
Q 044214 104 QKLLSNLLKDKNVMPYIDLNF----------RRLGHM---KVLIVFDDVT--CFSQLESLMGSLDWLTPVSRIILTTRNK 168 (385)
Q Consensus 104 ~~ll~~l~~~~~~~~~~~~l~----------~~l~~k---~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~ilvTtR~~ 168 (385)
.-+...+..-... ...+.+. .+++++ ..++|+|++. +..++..++... +.||+++++--..
T Consensus 81 ~p~~d~l~~~~~~-~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~~ 156 (205)
T PF02562_consen 81 RPIYDALEELFGK-EKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDPS 156 (205)
T ss_dssp HHHHHHHTTTS-T-TCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE---
T ss_pred HHHHHHHHHHhCh-HhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCce
Confidence 1111111110000 1122222 134443 5799999994 567788887664 5899999987544
No 147
>PRK06620 hypothetical protein; Validated
Probab=97.61 E-value=0.00012 Score=63.82 Aligned_cols=50 Identities=16% Similarity=0.082 Sum_probs=31.1
Q ss_pred CCCCccccchh--HHHHHHhhcCCCCCe--EEEEEEcCCCchHHHHHHHHHHHh
Q 044214 27 NKNQLVGVEST--VEEIESLLGVESKGV--YALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 27 ~~~~~vGR~~~--l~~l~~~L~~~~~~~--~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..+.++|-... ...+.++-.....++ +.+.|+|++|+|||+|++.+++..
T Consensus 15 fd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 15 PDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred chhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc
Confidence 33455666333 334444433111112 568999999999999999877654
No 148
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.61 E-value=0.00048 Score=60.74 Aligned_cols=47 Identities=21% Similarity=0.274 Sum_probs=35.9
Q ss_pred HHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 41 IESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 41 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
|-+.|..+=..-.++.|+|.+|+|||++|.+++.........++|++
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 44444433344679999999999999999999987755667788887
No 149
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.0012 Score=61.38 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
-.+.+.++|+.|+|||++|..+++.+-
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 356788999999999999999998753
No 150
>PHA00729 NTP-binding motif containing protein
Probab=97.60 E-value=0.00032 Score=61.01 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.+...|.|+|.+|+||||||..+++++.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456799999999999999999998764
No 151
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.00091 Score=67.18 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=41.7
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-.+++|.+...+.|.+.+..+ .-.+.+.++|+.|+||||+|+.+++.+.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 34578999999999999998842 2245678999999999999999998753
No 152
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.56 E-value=7.4e-05 Score=58.85 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999976
No 153
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.55 E-value=0.0019 Score=62.33 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=28.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFL 86 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 86 (385)
.+.+|.++|.+|+||||.|..++..++..-..+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV 129 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLV 129 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEe
Confidence 467999999999999999999998776543333334
No 154
>PRK14974 cell division protein FtsY; Provisional
Probab=97.54 E-value=0.0022 Score=59.64 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
++.+|.++|++|+||||++..++..++..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999998876554
No 155
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.53 E-value=0.00045 Score=68.41 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=35.4
Q ss_pred CCccccchhHHHHHHhhc---C-------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 29 NQLVGVESTVEEIESLLG---V-------ESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
++++|-++..+++.+.+. . +....+-+.++|++|+|||+||+.+++...
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 457888877666655433 1 122345688999999999999999998653
No 156
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.50 E-value=0.0011 Score=57.05 Aligned_cols=56 Identities=14% Similarity=0.090 Sum_probs=35.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLL 111 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~ 111 (385)
++++.++|+.|+||||.+.+++.+.+.+-..+..++ .........+-++...+.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis----~D~~R~ga~eQL~~~a~~l~ 56 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS----ADTYRIGAVEQLKTYAEILG 56 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE----ESTSSTHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec----CCCCCccHHHHHHHHHHHhc
Confidence 468999999999999999999887655544455555 11111344444555555554
No 157
>PRK06696 uridine kinase; Validated
Probab=97.49 E-value=0.00021 Score=62.89 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=36.2
Q ss_pred cchhHHHHHHhhcC-CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 34 VESTVEEIESLLGV-ESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 34 R~~~l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
|++.+++|.+.+.. ..+.+.+|+|.|.+|+||||||+.+++.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 55666777776643 34567899999999999999999999987544
No 158
>PRK04296 thymidine kinase; Provisional
Probab=97.49 E-value=0.00025 Score=60.70 Aligned_cols=108 Identities=15% Similarity=0.032 Sum_probs=60.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCC--C----chHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNV--M----PYIDLNFRR 126 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~--~----~~~~~l~~~ 126 (385)
.++.|+|..|.||||+|..++.+...+...++.+... .... .... .+.+.++..... . +....+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~--~d~~-~~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA--IDDR-YGEG----KVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc--cccc-ccCC----cEecCCCCcccceEeCChHHHHHHHHh-
Confidence 4788999999999999999999876554444444210 0001 1111 222222211111 1 22333333
Q ss_pred hCCceEEEEEeCCCC--hhhhhHhhccCCCCCCCcEEEEEeccHHH
Q 044214 127 LGHMKVLIVFDDVTC--FSQLESLMGSLDWLTPVSRIILTTRNKQV 170 (385)
Q Consensus 127 l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ilvTtR~~~~ 170 (385)
..++.-+||+|.+.- .+++.++...+. ..|..|++|.++.+.
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTDF 118 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCccc
Confidence 233556899999953 343444544432 357789999998543
No 159
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00057 Score=70.34 Aligned_cols=49 Identities=18% Similarity=0.309 Sum_probs=38.9
Q ss_pred CCccccchhHHHHHHhhcC------C-CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 29 NQLVGVESTVEEIESLLGV------E-SKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~------~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..++|-++.++.+.+.+.. . ......+.++|++|+|||.+|+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999988887762 1 12245789999999999999999998774
No 160
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.47 E-value=0.00082 Score=55.52 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=27.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
++.|+|.+|+|||+++..++......-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999987765545566665
No 161
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.47 E-value=0.00015 Score=58.75 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=29.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC-CCc-eEEEeecc
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGD-FDG-SCFLENVR 90 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~-~~w~~~~~ 90 (385)
..-|.|+|++|+||||+++.+++.+++. |.. .+|...++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 3468999999999999999999988766 653 34444343
No 162
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.46 E-value=0.00057 Score=70.99 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=40.0
Q ss_pred CCCccccchhHHHHHHhhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 28 KNQLVGVESTVEEIESLLGV-----------ESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
-+++.|.+..++++.+++.. +-...+.+.++|++|+|||+||+.+++.....
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~ 239 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY 239 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe
Confidence 34588999999998887631 11234678899999999999999999876443
No 163
>PRK07261 topology modulation protein; Provisional
Probab=97.45 E-value=0.00025 Score=59.65 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.|.|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 164
>PRK07667 uridine kinase; Provisional
Probab=97.45 E-value=0.00033 Score=60.20 Aligned_cols=42 Identities=21% Similarity=0.409 Sum_probs=33.3
Q ss_pred HHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 38 VEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 38 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
++.+.+.+....+...+|+|.|.+|+||||+|..+.+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 455666666555566899999999999999999999977544
No 165
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.45 E-value=0.001 Score=58.31 Aligned_cols=48 Identities=23% Similarity=0.352 Sum_probs=35.5
Q ss_pred HHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 40 EIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 40 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.|-.+|..+=..-.++.|+|.+|+||||+|.+++......-..++|++
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 344445433345679999999999999999999987755555677775
No 166
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.44 E-value=0.0011 Score=57.42 Aligned_cols=99 Identities=19% Similarity=0.297 Sum_probs=62.8
Q ss_pred CCccccchhHHHHHHhhcC--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHH
Q 044214 29 NQLVGVESTVEEIESLLGV--ESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKL 106 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~l 106 (385)
..++|-+...+.|.+.-.. ..-..--|.+||.-|.|||+|++++.+.+.+.+-..+=++ .... .++
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~----k~dl-~~L------- 127 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD----KEDL-ATL------- 127 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc----HHHH-hhH-------
Confidence 4689988888887664331 1223446889999999999999999999887766533332 1010 111
Q ss_pred HHHHhCCCCCCchHHHHHHHh--CCceEEEEEeCCC---ChhhhhHhhccCC
Q 044214 107 LSNLLKDKNVMPYIDLNFRRL--GHMKVLIVFDDVT---CFSQLESLMGSLD 153 (385)
Q Consensus 107 l~~l~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~---~~~~~~~l~~~~~ 153 (385)
..+.+.| ...|+.|+.||+. ..+....+...+.
T Consensus 128 --------------p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~Le 165 (287)
T COG2607 128 --------------PDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALE 165 (287)
T ss_pred --------------HHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhc
Confidence 2223333 3578999999992 3344555554443
No 167
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.44 E-value=0.00083 Score=58.47 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=32.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
..-+++.|+|.+|+|||++|.+++.........++|++
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 44679999999999999999999987765667788887
No 168
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.0062 Score=57.94 Aligned_cols=25 Identities=28% Similarity=0.170 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..+++++|++|+||||++.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999754
No 169
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.41 E-value=0.00015 Score=67.41 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=41.4
Q ss_pred CccccchhHHHHHHhhcCC----CCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 30 QLVGVESTVEEIESLLGVE----SKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 30 ~~vGR~~~l~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.++|.++.++++.+++... +...+++.|+|++|+||||||..+++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999999988641 234678999999999999999999987643
No 170
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0004 Score=62.50 Aligned_cols=79 Identities=19% Similarity=0.200 Sum_probs=51.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh----hCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI----SGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRL 127 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~----~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l 127 (385)
-++|.++|++|.|||+|.+++++++ .++|.....+. -+...++....+.-++... ...+.+.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE---------inshsLFSKWFsESgKlV~--kmF~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE---------INSHSLFSKWFSESGKLVA--KMFQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE---------EehhHHHHHHHhhhhhHHH--HHHHHHHHHH
Confidence 4789999999999999999999964 55676666665 2223344444333222111 4455666666
Q ss_pred CCce--EEEEEeCCCC
Q 044214 128 GHMK--VLIVFDDVTC 141 (385)
Q Consensus 128 ~~k~--~LlVlDdv~~ 141 (385)
+++. +.+.+|.|.+
T Consensus 246 ~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEVES 261 (423)
T ss_pred hCCCcEEEEEeHHHHH
Confidence 6655 4566888854
No 171
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0013 Score=63.02 Aligned_cols=115 Identities=21% Similarity=0.150 Sum_probs=65.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCC
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGH 129 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~ 129 (385)
.....+.+.|++|+|||+||.+++. ...|+.+-.++ .... -++.+-.+-. ..........+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiS-pe~m----iG~sEsaKc~-----------~i~k~F~DAYkS 597 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIIS-PEDM----IGLSESAKCA-----------HIKKIFEDAYKS 597 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeC-hHHc----cCccHHHHHH-----------HHHHHHHHhhcC
Confidence 4466788999999999999999986 46788555444 1111 0110000000 111222333445
Q ss_pred ceEEEEEeCCCChhhhh------------Hhh---ccCCCCCCCcEEEEEeccHHHHhhccc-eecccC
Q 044214 130 MKVLIVFDDVTCFSQLE------------SLM---GSLDWLTPVSRIILTTRNKQVLRNWRV-NAFKRN 182 (385)
Q Consensus 130 k~~LlVlDdv~~~~~~~------------~l~---~~~~~~~~gs~ilvTtR~~~~~~~~~~-~~~~~~ 182 (385)
.--.||+||+...-+|- .++ ...+..++.--|+-||-...++..|+. .+|...
T Consensus 598 ~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~ 666 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSST 666 (744)
T ss_pred cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhhe
Confidence 56789999996443332 222 222323334445668888899988876 555543
No 172
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.40 E-value=7.9e-05 Score=47.08 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=32.5
Q ss_pred CCCcEEEecCc---ccCCCCC--CCeeEEEcCCCCCCCCCCCC
Q 044214 346 PKLRFLKFYSS---SFNGENK--CKISYLQDPGFAGVKLNNFG 383 (385)
Q Consensus 346 ~~LrvL~l~~~---~lp~~i~--~~LryL~l~~~~~~~lP~~~ 383 (385)
++|++|+|+++ .+|..++ .+|++|++++|+++.+|.+.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~l~ 43 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISPLS 43 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGGGT
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcCCC
Confidence 47999999998 8888788 99999999999999988654
No 173
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00039 Score=67.60 Aligned_cols=92 Identities=20% Similarity=0.270 Sum_probs=58.7
Q ss_pred CCccccchhHHHHHHhhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCC
Q 044214 29 NQLVGVESTVEEIESLLGV----------ESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGG 98 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~ 98 (385)
..+=|.+..+.+|.+++.. +-..++-|.++|++|+|||.||++++.+..-.| +. ++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~----isAp--- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LS----ISAP--- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Ee----ecch---
Confidence 4577899999988887642 113367799999999999999999999765333 32 1111
Q ss_pred hHHHHHHHHHHHhCCCCCCchHHHH-HHHhCCceEEEEEeCCC
Q 044214 99 LSCLRQKLLSNLLKDKNVMPYIDLN-FRRLGHMKVLIVFDDVT 140 (385)
Q Consensus 99 ~~~l~~~ll~~l~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~ 140 (385)
++.+.+.++.. +.+..+ .+.-...++++++|+++
T Consensus 258 ------eivSGvSGESE--kkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 ------EIVSGVSGESE--KKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ------hhhcccCcccH--HHHHHHHHHHhccCCeEEEeeccc
Confidence 22222222221 222222 33345689999999996
No 174
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.37 E-value=0.00042 Score=56.20 Aligned_cols=24 Identities=25% Similarity=0.474 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999997644
No 175
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.36 E-value=0.0024 Score=66.46 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=37.2
Q ss_pred CCccccchhHHHHHHhhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 29 NQLVGVESTVEEIESLLGV-----------ESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
..+.|.+...++|.+.+.. +-...+-+.++|++|+|||++|+.+++.....
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~ 514 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN 514 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 4567877777777765531 11234568999999999999999999976543
No 176
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.36 E-value=0.00074 Score=62.62 Aligned_cols=30 Identities=37% Similarity=0.596 Sum_probs=26.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
..+..++|||++|+|||.+|+.+++...-.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 457889999999999999999999987654
No 177
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.35 E-value=0.0015 Score=61.73 Aligned_cols=100 Identities=17% Similarity=0.154 Sum_probs=62.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCc
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHM 130 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k 130 (385)
....+.|||..|.|||-|++++.+......+....+. .........+...+.. ...+.+++.. .
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y---------~~se~f~~~~v~a~~~-----~~~~~Fk~~y--~ 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY---------LTSEDFTNDFVKALRD-----NEMEKFKEKY--S 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe---------ccHHHHHHHHHHHHHh-----hhHHHHHHhh--c
Confidence 4678999999999999999999998877776544444 2233333444443332 3345566666 3
Q ss_pred eEEEEEeCCCC-------hhhhhHhhccCCCCCCCcEEEEEeccH
Q 044214 131 KVLIVFDDVTC-------FSQLESLMGSLDWLTPVSRIILTTRNK 168 (385)
Q Consensus 131 ~~LlVlDdv~~-------~~~~~~l~~~~~~~~~gs~ilvTtR~~ 168 (385)
-=++++||++- .+.+-.++..+. ..|-.||+|++..
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~ 218 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRP 218 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCC
Confidence 34888999952 122222233333 2344899999643
No 178
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.31 E-value=0.00012 Score=59.31 Aligned_cols=44 Identities=27% Similarity=0.324 Sum_probs=32.0
Q ss_pred cccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 044214 32 VGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 32 vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
||....++++.+.+..-......|.|+|..|+||+++|+.+...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 57777888887777642233446889999999999999988874
No 179
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.28 E-value=0.0079 Score=58.09 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=27.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh--CCCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS--GDFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~w~~ 87 (385)
.++++++|++|+||||++..++.... ..-..+..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 35899999999999999999987664 3334455554
No 180
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.28 E-value=0.0026 Score=56.01 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=33.7
Q ss_pred HHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC------CceEEEe
Q 044214 41 IESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDF------DGSCFLE 87 (385)
Q Consensus 41 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~w~~ 87 (385)
|-+.|..+=..-.++.|+|.+|+|||+||.+++....... ..++|+.
T Consensus 8 lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 8 LDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 3334443334456999999999999999999987654444 5667776
No 181
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.28 E-value=0.0022 Score=56.91 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=32.3
Q ss_pred HhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC------CCceEEEe
Q 044214 43 SLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGD------FDGSCFLE 87 (385)
Q Consensus 43 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~w~~ 87 (385)
..|..+-..-.++.|+|.+|+|||+||.+++...... -..++|++
T Consensus 10 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 10 ELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 3344333445799999999999999999998643222 36788887
No 182
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.28 E-value=0.0011 Score=60.13 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCCCCCccccchhHHHHHHhhcC-------CCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 4 SELINEVVNHILKRLDEVFRPRDNKNQLVGVESTVEEIESLLGV-------ESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 4 ~~~i~~i~~~v~~~l~~~~~~~~~~~~~vGR~~~l~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.+..+++.+.+.+++.. ........+ ++...+.+.+.+.. ...+.++++++|++|+||||.+..++..+
T Consensus 21 ~~~~~~i~~~~~~~~~~--~~~~~~~~~--~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 21 YEVVEKIIEALKKELKG--KKVKDAELL--KEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred HHHHHHHHHHHHHHHhh--ccCCCHHHH--HHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34566677776655443 111111111 22223344444332 12346899999999999999999999877
Q ss_pred hCCCCceEEEe
Q 044214 77 SGDFDGSCFLE 87 (385)
Q Consensus 77 ~~~f~~~~w~~ 87 (385)
...-..+.++.
T Consensus 97 ~~~g~~V~li~ 107 (272)
T TIGR00064 97 KKQGKSVLLAA 107 (272)
T ss_pred HhcCCEEEEEe
Confidence 65544455554
No 183
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0011 Score=64.70 Aligned_cols=100 Identities=22% Similarity=0.382 Sum_probs=59.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHh-CCc
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRL-GHM 130 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l-~~k 130 (385)
+.-|.+||++|+|||-||+++++.-+-.| ++ +... +++....++.. ..+..+.++- ..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----is-VKGP------------ELlNkYVGESE--rAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----IS-VKGP------------ELLNKYVGESE--RAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Ee-ecCH------------HHHHHHhhhHH--HHHHHHHHHhhcCC
Confidence 56789999999999999999999866554 33 2221 23333322221 2333344433 357
Q ss_pred eEEEEEeCCCC-------------hhhhhHhhccCCCC--CCCcEEEEEeccHHHH
Q 044214 131 KVLIVFDDVTC-------------FSQLESLMGSLDWL--TPVSRIILTTRNKQVL 171 (385)
Q Consensus 131 ~~LlVlDdv~~-------------~~~~~~l~~~~~~~--~~gs~ilvTtR~~~~~ 171 (385)
+|+|++|.++. ...+..|+..+... ..|--||-.|..+++.
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI 660 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII 660 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCccc
Confidence 99999999963 12245555555422 2355566666555543
No 184
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.26 E-value=0.001 Score=54.79 Aligned_cols=113 Identities=17% Similarity=0.133 Sum_probs=61.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHH-----hCC-----CCCC-----
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNL-----LKD-----KNVM----- 117 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l-----~~~-----~~~~----- 117 (385)
.+|-|++-.|.||||+|...+-+...+-..+.++...... .. .+-..++..+ ..+ +.. .+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~-~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WK-YGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-Cc-cCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 3678888899999999999988765554445554433221 11 2333333332 000 000 0000
Q ss_pred --chHHHHHHHhCC-ceEEEEEeCCCC-----hhhhhHhhccCCCCCCCcEEEEEeccH
Q 044214 118 --PYIDLNFRRLGH-MKVLIVFDDVTC-----FSQLESLMGSLDWLTPVSRIILTTRNK 168 (385)
Q Consensus 118 --~~~~~l~~~l~~-k~~LlVlDdv~~-----~~~~~~l~~~~~~~~~gs~ilvTtR~~ 168 (385)
+.....++.+.. .-=|+|||++-. .-..+.+...+.....+..||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 222333444433 456999999932 222334444444344677899999985
No 185
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.24 E-value=0.00052 Score=46.80 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=43.5
Q ss_pred CeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCC-CCC--CCeeEEEcCCCCC
Q 044214 321 KIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNG-ENK--CKISYLQDPGFAG 376 (385)
Q Consensus 321 ~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~-~i~--~~LryL~l~~~~~ 376 (385)
+++.+.+..+. -..+++..|.++++|++|+++++ .+|. .+. .+|++|++++|++
T Consensus 2 ~L~~L~l~~n~--l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNK--LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSST--ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCC--CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46677777664 45678899999999999999988 5554 555 8999999999875
No 186
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.24 E-value=0.0037 Score=56.79 Aligned_cols=185 Identities=18% Similarity=0.187 Sum_probs=96.5
Q ss_pred CCCCccccchhHHHHHHhhcC--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHH
Q 044214 27 NKNQLVGVESTVEEIESLLGV--ESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQ 104 (385)
Q Consensus 27 ~~~~~vGR~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~ 104 (385)
+-..++|-.++-..+..++.+ -.+...-+.|+|+.|.|||+|......+.++.-+...-+. ..... ..-.-.+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~-Lng~~---~~dk~al~ 97 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVR-LNGEL---QTDKIALK 97 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEE-ECccc---hhhHHHHH
Confidence 446799999999999888863 1133446789999999999998877766332223333333 22111 11222344
Q ss_pred HHHHHHhCCCC----CC----chHHHHHHHhCC------ceEEEEEeCCCCh----hh--hhHhhccC-CCCCCCcEEEE
Q 044214 105 KLLSNLLKDKN----VM----PYIDLNFRRLGH------MKVLIVFDDVTCF----SQ--LESLMGSL-DWLTPVSRIIL 163 (385)
Q Consensus 105 ~ll~~l~~~~~----~~----~~~~~l~~~l~~------k~~LlVlDdv~~~----~~--~~~l~~~~-~~~~~gs~ilv 163 (385)
.|.+++..+-. .. +....+...|+. .+++.|+|.++-. .+ +-.++..- ....|=|-|-+
T Consensus 98 ~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~ 177 (408)
T KOG2228|consen 98 GITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGV 177 (408)
T ss_pred HHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEe
Confidence 44444432221 11 445555555542 4688999888621 11 22222211 12345566778
Q ss_pred EeccHHHHhhcc-c-eecc-------cCCCCCCchHHHHHHHHHhCCCccchhHHhHHHHHHH
Q 044214 164 TTRNKQVLRNWR-V-NAFK-------RNHPDVGNEKLSSNVMKYAQGVPLALKVLVWESAISK 217 (385)
Q Consensus 164 TtR~~~~~~~~~-~-~~~~-------~~~~~~~~~~~~~~i~~~~~GlPLal~~~~w~~~l~~ 217 (385)
|||-.-.-.... + ..|. ...+-+++..+.+++...-.|.|.++. .|...+++
T Consensus 178 Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~v~~e~~~~~~--~wn~~~~~ 238 (408)
T KOG2228|consen 178 TTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLSVPAEFSDFAE--KWNRSVQE 238 (408)
T ss_pred eccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhcCCccCccHHH--HHHhhhhH
Confidence 998542211110 0 1121 122233445555555544456555444 77766555
No 187
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.011 Score=55.53 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=28.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
+.++++++|+.|+||||++..++......-..+.+++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4679999999999999999999986644434455555
No 188
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.0049 Score=58.51 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..++|.++|..|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998664
No 189
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.22 E-value=0.00048 Score=58.23 Aligned_cols=37 Identities=32% Similarity=0.661 Sum_probs=31.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
...+|.+.|++|+||||+|+.+++.+...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4468999999999999999999999887777777764
No 190
>PRK06762 hypothetical protein; Provisional
Probab=97.21 E-value=0.0012 Score=55.16 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=22.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.+|.|+|++|+||||+|+.+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999876
No 191
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.20 E-value=0.0011 Score=55.89 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=24.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
+.|.++|.+|+||||+|+++++.++++-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 4688999999999999999999776543
No 192
>PRK13695 putative NTPase; Provisional
Probab=97.20 E-value=0.00084 Score=56.62 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.|+|+|.+|+|||||++.+++.++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988765
No 193
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.0043 Score=58.00 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=35.1
Q ss_pred Cccc-cchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 30 QLVG-VESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 30 ~~vG-R~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.++| -+..++.+.+.+..+ .-.+...++|+.|+|||++|..+++.+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3566 566677787777632 235567999999999999999999865
No 194
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.19 E-value=0.0028 Score=59.96 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=54.2
Q ss_pred HHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCC-
Q 044214 39 EEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVM- 117 (385)
Q Consensus 39 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~- 117 (385)
.++-+.|..+=..-.++.|.|.+|+|||||+.+++......-..++|++ .. .....+... +..++....+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs-~E------Es~~qi~~R-a~rlg~~~~~l~ 140 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS-GE------ESPEQIKLR-ADRLGISTENLY 140 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE-CC------cCHHHHHHH-HHHcCCCcccEE
Confidence 3444444432234569999999999999999999987765545666765 21 222222221 23333222211
Q ss_pred ----chHHHHHHHhC-CceEEEEEeCCC
Q 044214 118 ----PYIDLNFRRLG-HMKVLIVFDDVT 140 (385)
Q Consensus 118 ----~~~~~l~~~l~-~k~~LlVlDdv~ 140 (385)
...+.+.+.+. .++-++|+|.+.
T Consensus 141 l~~e~~le~I~~~i~~~~~~lVVIDSIq 168 (372)
T cd01121 141 LLAETNLEDILASIEELKPDLVIIDSIQ 168 (372)
T ss_pred EEccCcHHHHHHHHHhcCCcEEEEcchH
Confidence 22344444443 467789999983
No 195
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.18 E-value=0.0022 Score=55.22 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=59.0
Q ss_pred HHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCC
Q 044214 38 VEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVM 117 (385)
Q Consensus 38 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 117 (385)
.+.+...+.. +-+++.|.|.+|.||||++..+.+.+...-..+++.. . -......+....+...
T Consensus 7 ~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a-p---------T~~Aa~~L~~~~~~~a--- 70 (196)
T PF13604_consen 7 REAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA-P---------TNKAAKELREKTGIEA--- 70 (196)
T ss_dssp HHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE-S---------SHHHHHHHHHHHTS-E---
T ss_pred HHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC-C---------cHHHHHHHHHhhCcch---
Confidence 3444444542 2357889999999999999998886655433344443 1 1122223333332111
Q ss_pred chHHHHHHHh----------CCceEEEEEeCCCC--hhhhhHhhccCCCCCCCcEEEEEeccH
Q 044214 118 PYIDLNFRRL----------GHMKVLIVFDDVTC--FSQLESLMGSLDWLTPVSRIILTTRNK 168 (385)
Q Consensus 118 ~~~~~l~~~l----------~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ilvTtR~~ 168 (385)
..+..+.... ..+.-+||+|++.. ...+..++..... .|+++|+.-=..
T Consensus 71 ~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 71 QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred hhHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 1111111111 12234999999964 4567777766552 577887766443
No 196
>PRK10867 signal recognition particle protein; Provisional
Probab=97.18 E-value=0.0046 Score=59.50 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
.+.+|.++|.+|+||||.|..++..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46899999999999999999998876554
No 197
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=97.14 E-value=0.006 Score=54.64 Aligned_cols=141 Identities=16% Similarity=0.113 Sum_probs=89.4
Q ss_pred HhHHHHHHHHHHHHhhccCCCCCCCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCc
Q 044214 3 ESELINEVVNHILKRLDEVFRPRDNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDG 82 (385)
Q Consensus 3 e~~~i~~i~~~v~~~l~~~~~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 82 (385)
+.+.++.-......+-+....+....+.|+|-.. .+++..++......-+.+.++|+.|+|||+-++.+++.. +.
T Consensus 46 ~~~~~~a~ia~~le~~~~q~~~~~~~~~~l~tkt-~r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~----p~ 120 (297)
T COG2842 46 DYATNEAKIAAFLEKKGVQAALEKLAPDFLETKT-VRRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN----PN 120 (297)
T ss_pred hHHHHHHHHHHHHcCCCcccccccccccccccch-hHhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC----cc
Confidence 4555665566665554543355566788888654 333444444333334489999999999999999988742 33
Q ss_pred eEEEeeccccccCCCChHHHHHHHHHHHhCCCCCC--chHHHHHHHhCCceEEEEEeCCCC--hhhhhHhhccCC
Q 044214 83 SCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVM--PYIDLNFRRLGHMKVLIVFDDVTC--FSQLESLMGSLD 153 (385)
Q Consensus 83 ~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~--~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~~~ 153 (385)
.|... .+.. +....+...+........... +....+...+.+..-+++.|+.+. ...++.+.....
T Consensus 121 -~~l~~---~~p~-~~a~~~i~~i~~~~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d 190 (297)
T COG2842 121 -ALLIE---ADPS-YTALVLILIICAAAFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHD 190 (297)
T ss_pred -ceeec---CChh-hHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHH
Confidence 33331 2333 566666666666665555432 677777788899999999999974 455666654444
No 198
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.13 E-value=0.00041 Score=55.03 Aligned_cols=22 Identities=50% Similarity=0.856 Sum_probs=20.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 044214 55 LGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 55 v~I~G~gGiGKTtLA~~~~~~~ 76 (385)
|+|.|.+|+||||+|+++.++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999874
No 199
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.13 E-value=0.0049 Score=61.71 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=40.7
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.....++|....++++.+.+..-......|.|+|..|+|||++|+.+.+.-
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 345689999999999988776433334467899999999999999999853
No 200
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.10 E-value=0.0012 Score=64.73 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=34.8
Q ss_pred CCccccchhHHHHHHhh---cC-----CCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 29 NQLVGVESTVEEIESLL---GV-----ESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L---~~-----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.++.|.+...+.+.... .. +-..++-|.++|++|+|||.+|+.+++...-
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~ 285 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL 285 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 45777776665555421 10 1134567999999999999999999997643
No 201
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0064 Score=61.59 Aligned_cols=126 Identities=20% Similarity=0.263 Sum_probs=70.1
Q ss_pred CCCCccccchhHH---HHHHhhcC-------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCC
Q 044214 27 NKNQLVGVESTVE---EIESLLGV-------ESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIP 96 (385)
Q Consensus 27 ~~~~~vGR~~~l~---~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~ 96 (385)
.-.++.|-++..+ ++.+.|.+ +..-++=+.++|++|+|||-||++++..- .+-|++ ++..
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~s----vSGS- 378 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFS----VSGS- 378 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-----CCceee----echH-
Confidence 3356788775555 45555653 22336779999999999999999999753 344554 2111
Q ss_pred CChHHHHHHHHHHHhCCCCCCchHHHHHHH-hCCceEEEEEeCCCCh-----------------hhhhHhhccCCCCCCC
Q 044214 97 GGLSCLRQKLLSNLLKDKNVMPYIDLNFRR-LGHMKVLIVFDDVTCF-----------------SQLESLMGSLDWLTPV 158 (385)
Q Consensus 97 ~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~-----------------~~~~~l~~~~~~~~~g 158 (385)
+.......... ..+..+... =.+.++++.+|+++.. ..+.+++.....+..+
T Consensus 379 --------EFvE~~~g~~a--srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 --------EFVEMFVGVGA--SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred --------HHHHHhcccch--HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 11111111110 222222222 2457899999998521 2266666666544444
Q ss_pred cEE--EEEeccHHHHh
Q 044214 159 SRI--ILTTRNKQVLR 172 (385)
Q Consensus 159 s~i--lvTtR~~~~~~ 172 (385)
..| +-+|...++..
T Consensus 449 ~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILD 464 (774)
T ss_pred CcEEEEeccCCccccC
Confidence 433 34555555543
No 202
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.08 E-value=0.0014 Score=61.69 Aligned_cols=108 Identities=12% Similarity=0.080 Sum_probs=64.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCceE
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHMKV 132 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~ 132 (385)
..|.|.|+.|+||||+...+.+.+.......++.. -.... ..... ...+..+.............++..|+..+=
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti-Edp~E---~~~~~-~~~~i~q~evg~~~~~~~~~l~~~lr~~pd 197 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI-EDPIE---YVHRN-KRSLINQREVGLDTLSFANALRAALREDPD 197 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE-cCChh---hhccC-ccceEEccccCCCCcCHHHHHHHhhccCCC
Confidence 58999999999999999999987766555555553 11000 00000 000000000001112566778888999999
Q ss_pred EEEEeCCCChhhhhHhhccCCCCCCCcEEEEEeccH
Q 044214 133 LIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNK 168 (385)
Q Consensus 133 LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~ 168 (385)
.|++|.+.+.+.+...+... ..|..|+.|....
T Consensus 198 ~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 198 VILIGEMRDLETVELALTAA---ETGHLVFGTLHTN 230 (343)
T ss_pred EEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCC
Confidence 99999998877766544432 2455566665543
No 203
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.07 E-value=0.00096 Score=54.68 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=30.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
..+|-|+|.+|+||||||+++.+++.+.-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 358999999999999999999999987777777775
No 204
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.06 E-value=0.018 Score=53.33 Aligned_cols=164 Identities=15% Similarity=0.159 Sum_probs=79.0
Q ss_pred HHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC--Cce-----EEEeeccccccCCCChHHHHHHHHHHH
Q 044214 38 VEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDF--DGS-----CFLENVREESQIPGGLSCLRQKLLSNL 110 (385)
Q Consensus 38 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~-----~w~~~~~~~~~~~~~~~~l~~~ll~~l 110 (385)
.+.+...+.. ..-...+.++|+.|+||+++|..+++.+-..- .+. -|+. .... +++.-+... -..-
T Consensus 13 ~~~l~~~~~~-~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~----~g~H-PD~~~i~~~-p~~~ 85 (319)
T PRK08769 13 YDQTVAALDA-GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIA----AGTH-PDLQLVSFI-PNRT 85 (319)
T ss_pred HHHHHHHHHc-CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHh----cCCC-CCEEEEecC-CCcc
Confidence 4455555552 22345789999999999999999998652211 100 0000 0000 111000000 0000
Q ss_pred hCC---CCCCchHHHHHHHhC-----CceEEEEEeCCCCh--hhhhHhhccCCCCCCCcEEEEEeccH-HHHhhccc---
Q 044214 111 LKD---KNVMPYIDLNFRRLG-----HMKVLIVFDDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK-QVLRNWRV--- 176 (385)
Q Consensus 111 ~~~---~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~-~~~~~~~~--- 176 (385)
+.. ...++.+..+.+.+. +++-++|+|+++.. ..-..++..+..-..++.+|++|.+. .+......
T Consensus 86 ~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq 165 (319)
T PRK08769 86 GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQ 165 (319)
T ss_pred cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhhe
Confidence 000 001133333433332 45668999999743 44556665555444577676666543 33333222
Q ss_pred -eecccCCC---------CCCchHHHHHHHHHhCCCccchhH
Q 044214 177 -NAFKRNHP---------DVGNEKLSSNVMKYAQGVPLALKV 208 (385)
Q Consensus 177 -~~~~~~~~---------~~~~~~~~~~i~~~~~GlPLal~~ 208 (385)
..|..... .......+..++..++|.|+....
T Consensus 166 ~i~~~~~~~~~~~~~L~~~~~~~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 166 RLEFKLPPAHEALAWLLAQGVSERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred EeeCCCcCHHHHHHHHHHcCCChHHHHHHHHHcCCCHHHHHH
Confidence 22221100 011233356788999999975543
No 205
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.05 E-value=0.014 Score=56.23 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
++.++.++|.+|+||||.|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999999998764
No 206
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.05 E-value=0.0006 Score=58.63 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=23.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
+|+|.|.+|+||||+|+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988654
No 207
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.04 E-value=0.0045 Score=54.87 Aligned_cols=48 Identities=17% Similarity=0.088 Sum_probs=34.3
Q ss_pred HHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 40 EIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 40 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.|-+.|..+=..-.++.|+|.+|+|||+||.+++.....+-..++|+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 344445433345679999999999999999999765433445677776
No 208
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.04 E-value=0.002 Score=52.46 Aligned_cols=102 Identities=18% Similarity=0.175 Sum_probs=56.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCceE
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHMKV 132 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~ 132 (385)
.+++|.|..|.|||||++.++.... ...+.+++.......-. +. -.......-.+.+.+-.++-
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~-~~--------------lS~G~~~rv~laral~~~p~ 90 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYF-EQ--------------LSGGEKMRLALAKLLLENPN 90 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEE-cc--------------CCHHHHHHHHHHHHHhcCCC
Confidence 5899999999999999999987543 23455555421111110 11 00011222234555556677
Q ss_pred EEEEeCCC---ChhhhhHhhccCCCCCCCcEEEEEeccHHHHh
Q 044214 133 LIVFDDVT---CFSQLESLMGSLDWLTPVSRIILTTRNKQVLR 172 (385)
Q Consensus 133 LlVlDdv~---~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~ 172 (385)
++++|+.. +......+...+... +..||++|.+.+...
T Consensus 91 illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 91 LLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 89999983 333333333333222 246788887765543
No 209
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.03 E-value=0.0022 Score=57.41 Aligned_cols=26 Identities=27% Similarity=0.532 Sum_probs=22.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
+|.++|.+|+||||+|+++++.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999877543
No 210
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.02 E-value=0.0065 Score=60.34 Aligned_cols=131 Identities=15% Similarity=0.177 Sum_probs=85.6
Q ss_pred CCCCccccchhHHHHHHhhcC---CCCCeEEEEEEcCCCchHHHHHHHHHHHhh-----C---CCCceEEEeeccccccC
Q 044214 27 NKNQLVGVESTVEEIESLLGV---ESKGVYALGIWGIGGIGKTTIARAIFDKIS-----G---DFDGSCFLENVREESQI 95 (385)
Q Consensus 27 ~~~~~vGR~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-----~---~f~~~~w~~~~~~~~~~ 95 (385)
.+..+-+|+.+..+|.+.+.. .......+-|.|.+|.|||+.+..|.+.++ . .|+ .+.+. .-..
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveIN-gm~l--- 468 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEIN-GLRL--- 468 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEc-ceee---
Confidence 567788999999999988763 223345889999999999999999998543 1 243 22332 1112
Q ss_pred CCChHHHHHHHHHHHhCCCCCC-chHHHHHHHhC-----CceEEEEEeCCCC-----hhhhhHhhccCCCCCCCcEEEEE
Q 044214 96 PGGLSCLRQKLLSNLLKDKNVM-PYIDLNFRRLG-----HMKVLIVFDDVTC-----FSQLESLMGSLDWLTPVSRIILT 164 (385)
Q Consensus 96 ~~~~~~l~~~ll~~l~~~~~~~-~~~~~l~~~l~-----~k~~LlVlDdv~~-----~~~~~~l~~~~~~~~~gs~ilvT 164 (385)
....++...|+..+.+....- ...+.+..+.. .+++++++|+++. .+.+-.++.-. ..++++++|-
T Consensus 469 -~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWp--t~~~sKLvvi 545 (767)
T KOG1514|consen 469 -ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWP--TLKNSKLVVI 545 (767)
T ss_pred -cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCC--cCCCCceEEE
Confidence 667888888888887765522 44455555543 4679999999853 23344443221 2457776554
Q ss_pred e
Q 044214 165 T 165 (385)
Q Consensus 165 t 165 (385)
+
T Consensus 546 ~ 546 (767)
T KOG1514|consen 546 A 546 (767)
T ss_pred E
Confidence 4
No 211
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0066 Score=56.80 Aligned_cols=94 Identities=19% Similarity=0.202 Sum_probs=56.6
Q ss_pred HHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCC
Q 044214 38 VEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVM 117 (385)
Q Consensus 38 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 117 (385)
..++-+.|..+--.-.+|.|-|-+|||||||..+++.++.... .+.+++ .. .+..++ +--...++-..++.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs-GE------ES~~Qi-klRA~RL~~~~~~l 149 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS-GE------ESLQQI-KLRADRLGLPTNNL 149 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe-CC------cCHHHH-HHHHHHhCCCccce
Confidence 3444444542222346899999999999999999999987766 677765 21 222222 22233344322322
Q ss_pred -----chHHHHHHHh-CCceEEEEEeCCC
Q 044214 118 -----PYIDLNFRRL-GHMKVLIVFDDVT 140 (385)
Q Consensus 118 -----~~~~~l~~~l-~~k~~LlVlDdv~ 140 (385)
...+.+.+.+ ..++-++|+|-+.
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 3333444444 4688999999983
No 212
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0036 Score=60.18 Aligned_cols=48 Identities=31% Similarity=0.383 Sum_probs=34.7
Q ss_pred CCccccch---hHHHHHHhhcCCC-------CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 29 NQLVGVES---TVEEIESLLGVES-------KGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 29 ~~~vGR~~---~l~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.+.-|-|+ |++++.+.|.++. .=++-|.++|++|.|||-||++++...
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 34566664 5566666776422 226789999999999999999999753
No 213
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.01 E-value=0.0018 Score=58.40 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=23.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
+.|.|+|.+|+||||+|+++...+.+.-..+.++.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 57999999999999999999997765323344443
No 214
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00076 Score=66.98 Aligned_cols=53 Identities=26% Similarity=0.360 Sum_probs=43.3
Q ss_pred CCccccchhHHHHHHhhcC----CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC
Q 044214 29 NQLVGVESTVEEIESLLGV----ESKGVYALGIWGIGGIGKTTIARAIFDKISGDFD 81 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 81 (385)
.+-+|-++..+++.+.|.- ..-+-++++++|++|||||+|++.+++-+...|-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv 379 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV 379 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE
Confidence 4578999999999998862 2334579999999999999999999998876663
No 215
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.00 E-value=0.018 Score=56.33 Aligned_cols=131 Identities=20% Similarity=0.225 Sum_probs=75.2
Q ss_pred CCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHH
Q 044214 27 NKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKL 106 (385)
Q Consensus 27 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~l 106 (385)
.-++++|-+.-...|...+..+. -.......|+-|+||||+|+-++.-+-..=. .... |.+-...-+.|
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-----~~~e-----PC~~C~~Ck~I 82 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENG-----PTAE-----PCGKCISCKEI 82 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCC-----CCCC-----cchhhhhhHhh
Confidence 34678999999999999998432 2456788999999999999999986522100 0000 01111111122
Q ss_pred HHH-------HhCCCC-CCchHHHHHHHh-----CCceEEEEEeCCC--ChhhhhHhhccCCCCCCCcEEEEEeccH
Q 044214 107 LSN-------LLKDKN-VMPYIDLNFRRL-----GHMKVLIVFDDVT--CFSQLESLMGSLDWLTPVSRIILTTRNK 168 (385)
Q Consensus 107 l~~-------l~~~~~-~~~~~~~l~~~l-----~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~ilvTtR~~ 168 (385)
... +....+ .++-++.+.+.. +++.=+.|+|.|. +...+..++..+..-...-..|+.|.+.
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~ 159 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEP 159 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCc
Confidence 111 000000 113333333333 2455688999996 4567888887776544555556655543
No 216
>PTZ00301 uridine kinase; Provisional
Probab=96.98 E-value=0.00075 Score=58.60 Aligned_cols=29 Identities=24% Similarity=0.493 Sum_probs=24.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
..+|+|.|.+|+||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998775443
No 217
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.96 E-value=0.0021 Score=58.04 Aligned_cols=102 Identities=17% Similarity=0.130 Sum_probs=61.3
Q ss_pred hHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHh-CCCC
Q 044214 37 TVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLL-KDKN 115 (385)
Q Consensus 37 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~ 115 (385)
.++.+..++.. ...+|.|.|..|+||||++..+.+.+...-..++.+.+..+.. . ... .++. ....
T Consensus 68 ~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~-~-~~~--------~q~~v~~~~ 134 (264)
T cd01129 68 NLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ-I-PGI--------NQVQVNEKA 134 (264)
T ss_pred HHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec-C-CCc--------eEEEeCCcC
Confidence 33445555542 2347999999999999999999887644222333333222210 0 110 0110 0111
Q ss_pred CCchHHHHHHHhCCceEEEEEeCCCChhhhhHhhcc
Q 044214 116 VMPYIDLNFRRLGHMKVLIVFDDVTCFSQLESLMGS 151 (385)
Q Consensus 116 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~ 151 (385)
.......++..|+..+=.++++++.+.+....+...
T Consensus 135 ~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 135 GLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred CcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 225677888888889999999999988876655544
No 218
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.96 E-value=0.0095 Score=48.78 Aligned_cols=24 Identities=42% Similarity=0.624 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+|.|+|.+|+||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 219
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0099 Score=52.29 Aligned_cols=121 Identities=18% Similarity=0.383 Sum_probs=68.9
Q ss_pred CccccchhHHHHHHhhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCC
Q 044214 30 QLVGVESTVEEIESLLGV-----------ESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGG 98 (385)
Q Consensus 30 ~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~ 98 (385)
..=|-.+++++|.+.... +-+.++-|.++|++|.|||-+|++++++.. -+|+..++.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd-----acfirvigs------- 245 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD-----ACFIRVIGS------- 245 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC-----ceEEeehhH-------
Confidence 345667777777765431 224567899999999999999999999753 334442211
Q ss_pred hHHHHHHHHHHHhCCCCCCchHHHHHHHhCC-ceEEEEEeCCCC-------------h---hhhhHhhccCCCCCC--Cc
Q 044214 99 LSCLRQKLLSNLLKDKNVMPYIDLNFRRLGH-MKVLIVFDDVTC-------------F---SQLESLMGSLDWLTP--VS 159 (385)
Q Consensus 99 ~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~-------------~---~~~~~l~~~~~~~~~--gs 159 (385)
++.....++.. .....+.+..+. |-|+|++|.++. . ...-++..++..+.+ +-
T Consensus 246 ------elvqkyvgega--rmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgni 317 (435)
T KOG0729|consen 246 ------ELVQKYVGEGA--RMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNI 317 (435)
T ss_pred ------HHHHHHhhhhH--HHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCe
Confidence 12222222111 233344444444 668999998842 0 113344455554433 35
Q ss_pred EEEEEeccHHH
Q 044214 160 RIILTTRNKQV 170 (385)
Q Consensus 160 ~ilvTtR~~~~ 170 (385)
+|++.|..++.
T Consensus 318 kvlmatnrpdt 328 (435)
T KOG0729|consen 318 KVLMATNRPDT 328 (435)
T ss_pred EEEeecCCCCC
Confidence 77877765443
No 220
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.93 E-value=0.0013 Score=68.72 Aligned_cols=51 Identities=25% Similarity=0.367 Sum_probs=39.5
Q ss_pred CccccchhHHHHHHhhcC----CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 30 QLVGVESTVEEIESLLGV----ESKGVYALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 30 ~~vGR~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
..+|.++..+++.+++.. +..+.+++.++|++|+|||++|+.+++.+...|
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 478888888888876541 222345799999999999999999999875544
No 221
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0058 Score=60.79 Aligned_cols=73 Identities=23% Similarity=0.236 Sum_probs=47.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCc
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGD-FDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHM 130 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k 130 (385)
..-|.|.|..|+|||+||+++++.+... .-.+.+++ .... .. ..+..+++.+- ..+...+.-.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~-Cs~l-~~-~~~e~iQk~l~-------------~vfse~~~~~ 494 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVS-CSTL-DG-SSLEKIQKFLN-------------NVFSEALWYA 494 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEe-chhc-cc-hhHHHHHHHHH-------------HHHHHHHhhC
Confidence 4578999999999999999999977543 33444444 2111 11 23444444332 2244556678
Q ss_pred eEEEEEeCCC
Q 044214 131 KVLIVFDDVT 140 (385)
Q Consensus 131 ~~LlVlDdv~ 140 (385)
+-++||||++
T Consensus 495 PSiIvLDdld 504 (952)
T KOG0735|consen 495 PSIIVLDDLD 504 (952)
T ss_pred CcEEEEcchh
Confidence 8999999995
No 222
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.93 E-value=0.0011 Score=65.06 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=41.3
Q ss_pred CCccccchhHHHHHHhhc----CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 29 NQLVGVESTVEEIESLLG----VESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.+++|.++.++++.+.|. .-..+.+++.++|++|+|||+||+.+++-+..
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 358999999999999883 22345679999999999999999999986543
No 223
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.92 E-value=0.0012 Score=56.73 Aligned_cols=30 Identities=33% Similarity=0.544 Sum_probs=26.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
.++.+|+|.|.+|+||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 456899999999999999999999988765
No 224
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.011 Score=55.77 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=46.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCC--CceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCC----chHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDF--DGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVM----PYIDLNFR 125 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~----~~~~~l~~ 125 (385)
..+++++|+.|+||||++.+++.+....+ ..+.++. .... . ....+-+....+.++.+.... +.. ....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit-~D~~--R-~ga~EqL~~~a~~~gv~~~~~~~~~~l~-~~l~ 211 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT-TDSY--R-IGGHEQLRIFGKILGVPVHAVKDGGDLQ-LALA 211 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe-cccc--c-ccHHHHHHHHHHHcCCceEecCCcccHH-HHHH
Confidence 46899999999999999999998754333 3445554 2111 1 233334444444443322211 222 2333
Q ss_pred HhCCceEEEEEeCCC
Q 044214 126 RLGHMKVLIVFDDVT 140 (385)
Q Consensus 126 ~l~~k~~LlVlDdv~ 140 (385)
.+.++ -++++|..-
T Consensus 212 ~l~~~-DlVLIDTaG 225 (374)
T PRK14722 212 ELRNK-HMVLIDTIG 225 (374)
T ss_pred HhcCC-CEEEEcCCC
Confidence 44555 455699983
No 225
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.91 E-value=0.0014 Score=57.99 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=26.9
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 49 SKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 49 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
.++..+|+|.|.+|+|||||++.+...++..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 4567899999999999999999999877654
No 226
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.89 E-value=0.024 Score=54.43 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=28.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.+.+|.++|..|+||||++..++..++.+-..+..++
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~ 135 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVC 135 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 4689999999999999999999886654433344443
No 227
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.88 E-value=0.0024 Score=61.78 Aligned_cols=46 Identities=17% Similarity=0.076 Sum_probs=39.0
Q ss_pred CCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 29 NQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
..++||++.++.+...+..+. .|.|.|++|+|||+||+.+......
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHhcc
Confidence 469999999999988887432 5889999999999999999986543
No 228
>PRK06547 hypothetical protein; Provisional
Probab=96.88 E-value=0.0016 Score=54.64 Aligned_cols=28 Identities=36% Similarity=0.438 Sum_probs=24.5
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 49 SKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 49 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.....+|+|.|.+|+||||+|..+++..
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567799999999999999999999864
No 229
>PRK08233 hypothetical protein; Provisional
Probab=96.88 E-value=0.00089 Score=56.75 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..+|+|.|.+|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998764
No 230
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.87 E-value=0.0068 Score=50.55 Aligned_cols=114 Identities=16% Similarity=0.093 Sum_probs=59.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHH---hCC-----CC-CC------
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNL---LKD-----KN-VM------ 117 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l---~~~-----~~-~~------ 117 (385)
..|-|++-.|.||||.|...+-+...+--.+..+...... .. .+-...+..+.-.+ +.. .+ +.
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~-~~-~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA-WP-NGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-cc-cChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 4778888899999999999988765443334333222211 01 22222332220000 000 00 00
Q ss_pred chHHHHHHHhCC-ceEEEEEeCCC-----ChhhhhHhhccCCCCCCCcEEEEEeccH
Q 044214 118 PYIDLNFRRLGH-MKVLIVFDDVT-----CFSQLESLMGSLDWLTPVSRIILTTRNK 168 (385)
Q Consensus 118 ~~~~~l~~~l~~-k~~LlVlDdv~-----~~~~~~~l~~~~~~~~~gs~ilvTtR~~ 168 (385)
+.....++.+.. .-=|+|||.+. ..-..+++...+....++..||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 233344444444 44599999993 2222333333333344677899999975
No 231
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.87 E-value=0.0011 Score=57.74 Aligned_cols=27 Identities=41% Similarity=0.647 Sum_probs=24.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.+..+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999876
No 232
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.87 E-value=0.0077 Score=55.41 Aligned_cols=161 Identities=16% Similarity=0.157 Sum_probs=82.6
Q ss_pred ccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHH-Hh--hCCCCceEEEeeccccccC----C----CChHH
Q 044214 33 GVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFD-KI--SGDFDGSCFLENVREESQI----P----GGLSC 101 (385)
Q Consensus 33 GR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~-~~--~~~f~~~~w~~~~~~~~~~----~----~~~~~ 101 (385)
+|..+..--.++|. ++.+..|.+.|.+|.|||.||.+..- ++ +..|..++-...+-...+. | ..+..
T Consensus 228 prn~eQ~~ALdlLl--d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~P 305 (436)
T COG1875 228 PRNAEQRVALDLLL--DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGP 305 (436)
T ss_pred cccHHHHHHHHHhc--CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccc
Confidence 35555555555666 56788999999999999998887652 22 4456544433222111110 0 11222
Q ss_pred HHHHHHHHH---hCCCC-CCchHHHH----------HHHhCCc---eEEEEEeCCCC--hhhhhHhhccCCCCCCCcEEE
Q 044214 102 LRQKLLSNL---LKDKN-VMPYIDLN----------FRRLGHM---KVLIVFDDVTC--FSQLESLMGSLDWLTPVSRII 162 (385)
Q Consensus 102 l~~~ll~~l---~~~~~-~~~~~~~l----------~~~l~~k---~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~il 162 (385)
+.+.+...+ ..... .....+.+ ..+.+++ +-++|+|.+.+ ..++..+... .+.|+||+
T Consensus 306 Wmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR---~G~GsKIV 382 (436)
T COG1875 306 WMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTR---AGEGSKIV 382 (436)
T ss_pred hHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHh---ccCCCEEE
Confidence 233332222 11111 11111111 1122332 46999999975 4556666544 47899999
Q ss_pred EEeccHHHHhhccceecccCCCCCCchHHHHHHHHHhCCCccchhH
Q 044214 163 LTTRNKQVLRNWRVNAFKRNHPDVGNEKLSSNVMKYAQGVPLALKV 208 (385)
Q Consensus 163 vTtR~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 208 (385)
+|.--.++-.. .+.. ...-..-++++..|+|+.-.+
T Consensus 383 l~gd~aQiD~~----yl~~------~snGLtyvverfk~~~l~~hi 418 (436)
T COG1875 383 LTGDPAQIDTP----YLDE------TSNGLTYVVEKFKGHPLSAHI 418 (436)
T ss_pred EcCCHHHcCCc----cccC------CCccHHHHHHHhcCCCceeEE
Confidence 88754332111 1111 111234567777888876543
No 233
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.86 E-value=0.1 Score=48.35 Aligned_cols=150 Identities=15% Similarity=0.124 Sum_probs=78.4
Q ss_pred HHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC--------------------CCceEEEeeccccccCCC
Q 044214 38 VEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGD--------------------FDGSCFLENVREESQIPG 97 (385)
Q Consensus 38 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--------------------f~~~~w~~~~~~~~~~~~ 97 (385)
.+.+.+.+.. ..-...+.++|+.|+||+++|..+++.+-.. .+...|+..... ..
T Consensus 12 ~~~l~~~~~~-~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~--- 86 (319)
T PRK06090 12 WQNWKAGLDA-GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE-GK--- 86 (319)
T ss_pred HHHHHHHHHc-CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC-CC---
Confidence 4455555552 2235688999999999999999999864211 111222210000 00
Q ss_pred ChHHHHHHHHHHHhCCCCCCchHHHHHHHh-----CCceEEEEEeCCCC--hhhhhHhhccCCCCCCCcEEEEEeccH-H
Q 044214 98 GLSCLRQKLLSNLLKDKNVMPYIDLNFRRL-----GHMKVLIVFDDVTC--FSQLESLMGSLDWLTPVSRIILTTRNK-Q 169 (385)
Q Consensus 98 ~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ilvTtR~~-~ 169 (385)
.-.++.+..+.+.+ .++.-++|+|+++. ......++..+.+-.+++.+|++|.+. .
T Consensus 87 ----------------~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~ 150 (319)
T PRK06090 87 ----------------SITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKR 150 (319)
T ss_pred ----------------cCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence 00112333333333 23456889999974 455666666665545666666665543 4
Q ss_pred HHhhccc----eecccCCCC--------CCchHHHHHHHHHhCCCccchhHH
Q 044214 170 VLRNWRV----NAFKRNHPD--------VGNEKLSSNVMKYAQGVPLALKVL 209 (385)
Q Consensus 170 ~~~~~~~----~~~~~~~~~--------~~~~~~~~~i~~~~~GlPLal~~~ 209 (385)
+...... ..|...... .... .+..+++.++|.|+.....
T Consensus 151 lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~~-~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 151 LLPTIVSRCQQWVVTPPSTAQAMQWLKGQGIT-VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ChHHHHhcceeEeCCCCCHHHHHHHHHHcCCc-hHHHHHHHcCCCHHHHHHH
Confidence 4443332 122111000 0001 2456778889999866544
No 234
>PRK04040 adenylate kinase; Provisional
Probab=96.86 E-value=0.0012 Score=56.40 Aligned_cols=26 Identities=27% Similarity=0.541 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..+|+|+|++|+||||+++.+.+++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999999874
No 235
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.86 E-value=0.0063 Score=51.56 Aligned_cols=117 Identities=18% Similarity=0.216 Sum_probs=62.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHH------HHHHHHhCCC------CCC--
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQ------KLLSNLLKDK------NVM-- 117 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~------~ll~~l~~~~------~~~-- 117 (385)
-.+++|.|..|.|||||++.++.... ...+.+++.. ..... .+...... +++..++-.. ...
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g-~~~~~--~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDG-KDLAS--LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECC-EECCc--CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 35899999999999999999987543 3455555541 11111 11111111 1222222111 011
Q ss_pred --chHHHHHHHhCCceEEEEEeCCC---ChhhhhHhhccCCCC-CC-CcEEEEEeccHHHHh
Q 044214 118 --PYIDLNFRRLGHMKVLIVFDDVT---CFSQLESLMGSLDWL-TP-VSRIILTTRNKQVLR 172 (385)
Q Consensus 118 --~~~~~l~~~l~~k~~LlVlDdv~---~~~~~~~l~~~~~~~-~~-gs~ilvTtR~~~~~~ 172 (385)
...-.+.+.+-..+-++++|+.. +....+.+...+... .. +..||++|.+.+...
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 33334556666788899999983 233333333222211 12 567888888766543
No 236
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.86 E-value=0.0056 Score=51.79 Aligned_cols=115 Identities=17% Similarity=0.090 Sum_probs=57.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeecccc--------------ccCCCChHHHHHHHHHHHhCCCC-CC
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREE--------------SQIPGGLSCLRQKLLSNLLKDKN-VM 117 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~--------------~~~~~~~~~l~~~ll~~l~~~~~-~~ 117 (385)
.+++|.|..|+|||||++.++..... ..+.+++... .. .+. ..+.. ..+...+...-. ..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~~~~~~~~~~~~i~~~~q~-~~~~~--~tv~~~i~~~LS~G~ 103 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGV-PVSDLEKALSSLISVLNQR-PYLFD--TTLRNNLGRRFSGGE 103 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCE-EHHHHHHHHHhhEEEEccC-Ceeec--ccHHHhhcccCCHHH
Confidence 48999999999999999999875422 2344444311 00 000 00000 011111100000 01
Q ss_pred chHHHHHHHhCCceEEEEEeCCCC---hhhhhHhhccCCCCCCCcEEEEEeccHHHHh
Q 044214 118 PYIDLNFRRLGHMKVLIVFDDVTC---FSQLESLMGSLDWLTPVSRIILTTRNKQVLR 172 (385)
Q Consensus 118 ~~~~~l~~~l~~k~~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~ 172 (385)
...-.+.+.+-.++=++++|+... ....+.+...+.....+..||++|.+.+...
T Consensus 104 ~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 104 RQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 222345555667778899999842 2222222222221123567888888776654
No 237
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.85 E-value=0.0081 Score=58.47 Aligned_cols=95 Identities=16% Similarity=0.200 Sum_probs=54.7
Q ss_pred HHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCC
Q 044214 38 VEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVM 117 (385)
Q Consensus 38 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 117 (385)
+..+-+.|..+=..-.++.|.|.+|+|||||+.+++......-..++|++ .. .+...+... ++.++....+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs-~E------es~~qi~~r-a~rlg~~~~~l 137 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS-GE------ESASQIKLR-AERLGLPSDNL 137 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-cc------ccHHHHHHH-HHHcCCChhcE
Confidence 34444555433334569999999999999999999987754444567776 21 223333222 23333211111
Q ss_pred -----chHHHHHHHhC-CceEEEEEeCCC
Q 044214 118 -----PYIDLNFRRLG-HMKVLIVFDDVT 140 (385)
Q Consensus 118 -----~~~~~l~~~l~-~k~~LlVlDdv~ 140 (385)
...+.+.+.++ .+.-++|+|.+.
T Consensus 138 ~~~~e~~l~~i~~~i~~~~~~lVVIDSIq 166 (446)
T PRK11823 138 YLLAETNLEAILATIEEEKPDLVVIDSIQ 166 (446)
T ss_pred EEeCCCCHHHHHHHHHhhCCCEEEEechh
Confidence 22334444443 366789999984
No 238
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0055 Score=55.25 Aligned_cols=91 Identities=22% Similarity=0.170 Sum_probs=56.0
Q ss_pred hcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHH---HHHHHHHhCCCCCC----
Q 044214 45 LGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLR---QKLLSNLLKDKNVM---- 117 (385)
Q Consensus 45 L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~---~~ll~~l~~~~~~~---- 117 (385)
|..+=+.-+++=|+|+.|.||||+|.+++-..+..-...+|++.-.. .+...+. ......+.-..+..
T Consensus 53 LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~-----l~p~r~~~l~~~~~d~l~v~~~~~~e~q 127 (279)
T COG0468 53 LGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHA-----LDPERAKQLGVDLLDNLLVSQPDTGEQQ 127 (279)
T ss_pred hcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCC-----CCHHHHHHHHHhhhcceeEecCCCHHHH
Confidence 33333556899999999999999999999877777778899973222 3333322 22112222222211
Q ss_pred -chHHHHHHHhCCceEEEEEeCCC
Q 044214 118 -PYIDLNFRRLGHMKVLIVFDDVT 140 (385)
Q Consensus 118 -~~~~~l~~~l~~k~~LlVlDdv~ 140 (385)
+.++.+......+--|+|+|.+-
T Consensus 128 ~~i~~~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 128 LEIAEKLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHHHHHHHhccCCCCEEEEecCc
Confidence 44444444544456799999983
No 239
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.83 E-value=0.01 Score=55.18 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=33.5
Q ss_pred HHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC------CceEEEe
Q 044214 40 EIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDF------DGSCFLE 87 (385)
Q Consensus 40 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~w~~ 87 (385)
.+-+.|..+=..-.++-|+|.+|+|||+++.+++....... ..++|++
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 34444443334567899999999999999999987543211 3677887
No 240
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.83 E-value=0.0032 Score=55.56 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=32.0
Q ss_pred hHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 37 TVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 37 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
+..++.+.+....++..+|+|+|+||+|||||.-++...+.+.
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 3445555555545677899999999999999999999877654
No 241
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.82 E-value=0.0011 Score=46.55 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
+|+|.|.+|+||||+|+.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 242
>PRK06217 hypothetical protein; Validated
Probab=96.81 E-value=0.009 Score=50.77 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.|.|.|.+|+||||+|+++.+.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998763
No 243
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.81 E-value=0.017 Score=52.14 Aligned_cols=115 Identities=18% Similarity=0.144 Sum_probs=66.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCC-----CC----chH
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKN-----VM----PYI 120 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-----~~----~~~ 120 (385)
.+.+-++|.|..|+|||||.+.++..+... .+.+++. ...+... ....++...+ ..+ .+.. +. ...
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~-g~~v~~~-d~~~ei~~~~-~~~-~q~~~~~r~~v~~~~~k~ 183 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLR-GKKVGIV-DERSEIAGCV-NGV-PQHDVGIRTDVLDGCPKA 183 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEEC-CEEeecc-hhHHHHHHHh-ccc-ccccccccccccccchHH
Confidence 345789999999999999999999866533 4445553 2222110 1112222111 111 1110 00 112
Q ss_pred HHHHHHhC-CceEEEEEeCCCChhhhhHhhccCCCCCCCcEEEEEeccHHHHh
Q 044214 121 DLNFRRLG-HMKVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLR 172 (385)
Q Consensus 121 ~~l~~~l~-~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~ 172 (385)
.-+...+. ..+=++++|.+-..+.+..+...+. .|..||+||.+..+..
T Consensus 184 ~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 22333333 5788999999988777777766653 4778999998766543
No 244
>PRK03839 putative kinase; Provisional
Probab=96.80 E-value=0.0011 Score=56.26 Aligned_cols=24 Identities=33% Similarity=0.656 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999763
No 245
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.80 E-value=0.0037 Score=56.57 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=29.0
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCc
Q 044214 49 SKGVYALGIWGIGGIGKTTIARAIFDKISGDFDG 82 (385)
Q Consensus 49 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 82 (385)
..+..+|.|.|.+|+|||||+..+.+.+......
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~ 134 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPC 134 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCE
Confidence 3568899999999999999999999988766543
No 246
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.80 E-value=0.02 Score=50.32 Aligned_cols=49 Identities=22% Similarity=0.336 Sum_probs=37.5
Q ss_pred CCccccchhHHH---HHHhhcCC----CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 29 NQLVGVESTVEE---IESLLGVE----SKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 29 ~~~vGR~~~l~~---l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
++.||.++...+ |.+.|.++ .--++-|..+|++|.|||-+|+++++..+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k 176 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK 176 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC
Confidence 568898877654 45566542 22377899999999999999999998654
No 247
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.78 E-value=0.0068 Score=55.92 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=35.9
Q ss_pred HHHHHhhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 39 EEIESLLG-VESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 39 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
..|-.+|. .+=+.-+++.|+|++|+||||||.+++......-..++|+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 34444454 33345679999999999999999999887665556677775
No 248
>PRK05439 pantothenate kinase; Provisional
Probab=96.78 E-value=0.004 Score=57.14 Aligned_cols=30 Identities=33% Similarity=0.428 Sum_probs=25.7
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 49 SKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 49 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.+.+.+|+|.|.+|+||||+|+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456789999999999999999999886653
No 249
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.76 E-value=0.0009 Score=52.51 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhCCCCc
Q 044214 55 LGIWGIGGIGKTTIARAIFDKISGDFDG 82 (385)
Q Consensus 55 v~I~G~gGiGKTtLA~~~~~~~~~~f~~ 82 (385)
|.|+|.+|+|||++|+.++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 7899999999999999999988877754
No 250
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.75 E-value=0.0042 Score=55.80 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=31.3
Q ss_pred HHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh--hCC----CCceEEEe
Q 044214 40 EIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI--SGD----FDGSCFLE 87 (385)
Q Consensus 40 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~--~~~----f~~~~w~~ 87 (385)
.|-+.|..+=..-.+.=|+|.+|+|||+|+.+++-.+ ... -..++|++
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid 79 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID 79 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe
Confidence 3444444222234589999999999999999987543 211 23477776
No 251
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.75 E-value=0.0064 Score=51.28 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
.+++|+|+.|+|||||.+.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 5899999999999999998863
No 252
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.75 E-value=0.0078 Score=50.29 Aligned_cols=113 Identities=22% Similarity=0.129 Sum_probs=58.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEee---ccccccCCC-ChHHHHHHHHHHHhCCCCCC----chHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLEN---VREESQIPG-GLSCLRQKLLSNLLKDKNVM----PYIDLNF 124 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~---~~~~~~~~~-~~~~l~~~ll~~l~~~~~~~----~~~~~l~ 124 (385)
..++|.|..|.|||||++.++..... ..+.+++.. +.-..+.+. ....+...+.-. ..... ...-.+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~la 103 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAFA 103 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHHH
Confidence 48999999999999999999875432 233333321 111112101 111222322210 11111 3333455
Q ss_pred HHhCCceEEEEEeCCC---ChhhhhHhhccCCCCCCCcEEEEEeccHHHH
Q 044214 125 RRLGHMKVLIVFDDVT---CFSQLESLMGSLDWLTPVSRIILTTRNKQVL 171 (385)
Q Consensus 125 ~~l~~k~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~ 171 (385)
+.+-.++=++++|+-. +......+...+... +..||++|.+....
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 5566677888999983 223333333322222 35577788776554
No 253
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.75 E-value=0.0047 Score=57.66 Aligned_cols=48 Identities=23% Similarity=0.196 Sum_probs=38.3
Q ss_pred CCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 044214 28 KNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
...++|+...+.++.+.+..-.....-|.|+|..|+||+++|+.+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 356999999999988877643333446889999999999999988753
No 254
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0099 Score=59.70 Aligned_cols=93 Identities=24% Similarity=0.362 Sum_probs=58.2
Q ss_pred CCccccchhHHHHHHhhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCC
Q 044214 29 NQLVGVESTVEEIESLLGV----------ESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGG 98 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~ 98 (385)
++.=|-++...+|.+.+.. +-.+..-|.+||++|.|||-+|++|+...+- -|++ +...
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-----~FlS-VKGP------ 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-----NFLS-VKGP------ 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-----eEEe-ecCH------
Confidence 4566677777777775542 1133557889999999999999999986432 2343 3221
Q ss_pred hHHHHHHHHHHHhCCCCCCchHHHHHHHh-CCceEEEEEeCCCC
Q 044214 99 LSCLRQKLLSNLLKDKNVMPYIDLNFRRL-GHMKVLIVFDDVTC 141 (385)
Q Consensus 99 ~~~l~~~ll~~l~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~ 141 (385)
+++....++.+ +....+.++- ..++|+|++|.+++
T Consensus 740 ------ELLNMYVGqSE--~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ------ELLNMYVGQSE--ENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ------HHHHHHhcchH--HHHHHHHHHhhccCCeEEEeccccc
Confidence 23333333222 3334444443 45899999999975
No 255
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.75 E-value=0.01 Score=49.84 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=25.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
++.++|++|+||||++..++..+.+.-..++.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6789999999999999999987765523333343
No 256
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.75 E-value=0.0098 Score=57.96 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=54.1
Q ss_pred HHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCC
Q 044214 38 VEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVM 117 (385)
Q Consensus 38 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 117 (385)
+..|-+.|..+=..-.++.|.|.+|+|||||+.+++......-..++|++ .. ....++... +..++-.....
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs-~E------Es~~qi~~r-a~rlg~~~~~l 151 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS-GE------ESLQQIKMR-AIRLGLPEPNL 151 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-Cc------CCHHHHHHH-HHHcCCChHHe
Confidence 34455555433344579999999999999999999887654434567775 21 222222221 12222111111
Q ss_pred -----chHHHHHHHhCC-ceEEEEEeCCC
Q 044214 118 -----PYIDLNFRRLGH-MKVLIVFDDVT 140 (385)
Q Consensus 118 -----~~~~~l~~~l~~-k~~LlVlDdv~ 140 (385)
...+.+.+.+.. +.-++|+|.+.
T Consensus 152 ~~~~e~~~~~I~~~i~~~~~~~vVIDSIq 180 (454)
T TIGR00416 152 YVLSETNWEQICANIEEENPQACVIDSIQ 180 (454)
T ss_pred EEcCCCCHHHHHHHHHhcCCcEEEEecch
Confidence 223444444433 66789999984
No 257
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.74 E-value=0.0033 Score=58.04 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=35.8
Q ss_pred HHHHhhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 40 EIESLLG-VESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 40 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.|-.+|. .+=+.-+++-|+|++|+||||||.+++......-..++|++
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 3444454 33345678999999999999999999887665666777886
No 258
>PRK00625 shikimate kinase; Provisional
Probab=96.74 E-value=0.0013 Score=55.31 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.|.|+|++|+||||+++.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998764
No 259
>PRK14528 adenylate kinase; Provisional
Probab=96.74 E-value=0.02 Score=48.79 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
+.|.|.|++|+||||+|+.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998765
No 260
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.73 E-value=0.0014 Score=55.13 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
...|.|+|++|+||||+|+.+++.+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999986
No 261
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.73 E-value=0.0022 Score=53.43 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=59.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCceE
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHMKV 132 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~ 132 (385)
.+++|.|..|+|||||.+.++.... ...+.+++.. ..... .+..+....-...+..-.......-.+.+.+-.++-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g-~~~~~--~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDG-KEVSF--ASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECC-EECCc--CCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 4899999999999999999987543 3455566542 11111 111111110000000000011223345555666778
Q ss_pred EEEEeCCC---ChhhhhHhhccCCCC-CCCcEEEEEeccHHHHh
Q 044214 133 LIVFDDVT---CFSQLESLMGSLDWL-TPVSRIILTTRNKQVLR 172 (385)
Q Consensus 133 LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~ilvTtR~~~~~~ 172 (385)
++++|+.. +....+.+...+... ..|..||++|.+.....
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 88999984 222223332222211 23667888888765443
No 262
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.72 E-value=0.0019 Score=56.21 Aligned_cols=28 Identities=39% Similarity=0.611 Sum_probs=24.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+...+|+|+|.+|+||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567999999999999999999998654
No 263
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.72 E-value=0.0042 Score=55.06 Aligned_cols=122 Identities=20% Similarity=0.164 Sum_probs=71.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccC-CCChHHHHHHHHHHHhCCCC-------CC---ch-
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQI-PGGLSCLRQKLLSNLLKDKN-------VM---PY- 119 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~-~~~~~~l~~~ll~~l~~~~~-------~~---~~- 119 (385)
-.+++|+|.+|+||||+++.+..-.... .+.+++. ..+.... .....+...+++..++.... +. +.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~-g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFE-GKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEc-CcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 3589999999999999999999855433 3344443 1111110 02334445566666553332 11 22
Q ss_pred HHHHHHHhCCceEEEEEeCCCCh------hhhhHhhccCCCCCCCcEEEEEeccHHHHhhccc
Q 044214 120 IDLNFRRLGHMKVLIVFDDVTCF------SQLESLMGSLDWLTPVSRIILTTRNKQVLRNWRV 176 (385)
Q Consensus 120 ~~~l~~~l~~k~~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~~~~~ 176 (385)
.-.+.+.|.-++-++|.|..-+. .+.-.++..+.. ..|...++.|.+-.+...+..
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhhcc
Confidence 23466778889999999998432 222333322221 235567788888777766543
No 264
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.71 E-value=0.00098 Score=51.29 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=21.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 55 LGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 55 v~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
|-|+|.+|+|||++|..++..+.++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999876544
No 265
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.70 E-value=0.0027 Score=53.53 Aligned_cols=35 Identities=34% Similarity=0.323 Sum_probs=27.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFL 86 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 86 (385)
..+|+|+|++|+||||+|+.++..+...-..+.++
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 45899999999999999999999775432233444
No 266
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.69 E-value=0.014 Score=60.28 Aligned_cols=48 Identities=23% Similarity=0.311 Sum_probs=38.1
Q ss_pred CCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 29 NQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..++|+...+.++.+.+..-......|.|+|..|+|||++|+.+.+.-
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 469999999998877665322333478899999999999999998753
No 267
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.015 Score=56.85 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=23.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
..+++|+|.+|+||||++..++..+..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4799999999999999999998865443
No 268
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.075 Score=47.77 Aligned_cols=95 Identities=18% Similarity=0.292 Sum_probs=59.8
Q ss_pred CCCCCccccchhHHHHHHhhc---------C-CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccC
Q 044214 26 DNKNQLVGVESTVEEIESLLG---------V-ESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQI 95 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~---------~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~ 95 (385)
..=+..-|-+...+.|.+..- . .....+-|.++|++|.||+.||++|+..... -|++ +|..
T Consensus 130 VkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-----TFFS----vSSS 200 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-----TFFS----VSSS 200 (439)
T ss_pred CchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-----ceEE----eehH
Confidence 334678899988888888542 1 2233678999999999999999999986432 2333 2221
Q ss_pred CCChHHHHHHHHHHHhCCCCCCchHHHHHHHh-CCceEEEEEeCCC
Q 044214 96 PGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRL-GHMKVLIVFDDVT 140 (385)
Q Consensus 96 ~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~ 140 (385)
+ +.+.-.++.. .+...|.+.- ++|+-+|++|.++
T Consensus 201 -----D----LvSKWmGESE--kLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 201 -----D----LVSKWMGESE--KLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred -----H----HHHHHhccHH--HHHHHHHHHHHhcCCcEEEeehhh
Confidence 1 2222222111 3344444443 3689999999996
No 269
>PRK09354 recA recombinase A; Provisional
Probab=96.67 E-value=0.0079 Score=56.02 Aligned_cols=49 Identities=20% Similarity=0.216 Sum_probs=37.2
Q ss_pred HHHHHhhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 39 EEIESLLG-VESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 39 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
..|-.+|. .+=+.-+++-|+|++|+||||||.+++......-...+|+.
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 34445555 33345679999999999999999999887666667778886
No 270
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.67 E-value=0.0094 Score=60.86 Aligned_cols=50 Identities=26% Similarity=0.304 Sum_probs=33.3
Q ss_pred CccccchhHHHHHHhhc---CC-------CCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 30 QLVGVESTVEEIESLLG---VE-------SKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 30 ~~vGR~~~l~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
++.|.+...+++.+.+. .. ..-.+-|.|+|++|+|||++|+.+++.....
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~ 212 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP 212 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 35666666555555332 10 0113459999999999999999999876543
No 271
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.67 E-value=0.0027 Score=64.07 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=57.3
Q ss_pred CCCCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC-CCCceEEEeeccccccCCCChHHH
Q 044214 24 PRDNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG-DFDGSCFLENVREESQIPGGLSCL 102 (385)
Q Consensus 24 ~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~w~~~~~~~~~~~~~~~~l 102 (385)
|+..-+.++|.++.++.|...+... +.+.++|.+|+||||+|+.+++.+.. .++..+|..+. . .....+
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np-----~-~~~~~~ 95 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNP-----E-DPNNPK 95 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCC-----C-cchHHH
Confidence 3445577999999999988877743 36889999999999999999987633 45778888742 1 455566
Q ss_pred HHHHHHHHh
Q 044214 103 RQKLLSNLL 111 (385)
Q Consensus 103 ~~~ll~~l~ 111 (385)
++.+....+
T Consensus 96 ~~~v~~~~G 104 (637)
T PRK13765 96 IRTVPAGKG 104 (637)
T ss_pred HHHHHHhcC
Confidence 666665443
No 272
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.66 E-value=0.0026 Score=50.70 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=27.9
Q ss_pred hHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 37 TVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 37 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
+..++-+.|...-..-.+|.+.|.-|+|||||++.+++.+
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444444443211223489999999999999999999865
No 273
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.66 E-value=0.06 Score=47.35 Aligned_cols=112 Identities=15% Similarity=0.114 Sum_probs=62.4
Q ss_pred CCCCCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHH
Q 044214 23 RPRDNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCL 102 (385)
Q Consensus 23 ~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l 102 (385)
.....+..++.-...-+.+...-..-+++-.++.++|.-|.|||.+.+....-..+.=.+++.+. ... .+...+
T Consensus 22 ~~~~~~~~~~~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~-~s~~~~ 95 (269)
T COG3267 22 SWDIQPGLDYWAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPT-LSDATL 95 (269)
T ss_pred ccchhhhhhhhhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----Ccc-hhHHHH
Confidence 33334444444444444333322222344568999999999999999955554333222232222 112 666777
Q ss_pred HHHHHHHHhCCCCC-C-----chHHHHHHHh-CCce-EEEEEeCCC
Q 044214 103 RQKLLSNLLKDKNV-M-----PYIDLNFRRL-GHMK-VLIVFDDVT 140 (385)
Q Consensus 103 ~~~ll~~l~~~~~~-~-----~~~~~l~~~l-~~k~-~LlVlDdv~ 140 (385)
...++..+..+..- . .....+.+.. ++++ ..+++|++.
T Consensus 96 ~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah 141 (269)
T COG3267 96 LEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAH 141 (269)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHh
Confidence 88888887763321 1 2222333332 4566 999999995
No 274
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.64 E-value=0.0044 Score=55.51 Aligned_cols=64 Identities=20% Similarity=0.180 Sum_probs=43.4
Q ss_pred HHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHH
Q 044214 38 VEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQ 104 (385)
Q Consensus 38 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~ 104 (385)
-.++...+....++..+|+|+|.||+|||||.-++..++.++-..+.-+ .+...|+ +.--.++.
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVl-AVDPSSp--~TGGsiLG 100 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVL-AVDPSSP--FTGGSILG 100 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEE-EECCCCC--CCCccccc
Confidence 3456666666677888999999999999999999998876654433333 2433333 44444443
No 275
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.63 E-value=0.0018 Score=55.13 Aligned_cols=26 Identities=31% Similarity=0.250 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
+.++|+|.|++|+||||+|+.+++..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999764
No 276
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.63 E-value=0.011 Score=53.92 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=27.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCC-C-CceEEEe
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGD-F-DGSCFLE 87 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~~~~w~~ 87 (385)
+.++++|+|++|+||||++..++..+..+ - ..+..+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 35699999999999999999999866433 1 3344454
No 277
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.63 E-value=0.0026 Score=53.84 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=22.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
+|+|.|.+|+||||||..+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999876543
No 278
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.62 E-value=0.0049 Score=52.02 Aligned_cols=104 Identities=15% Similarity=0.052 Sum_probs=56.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEee--ccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCc
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLEN--VREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHM 130 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~--~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k 130 (385)
.+++|.|..|+|||||++.++.... ...+.+++.. +....+. .. -.......-.+.+.+-.+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~q~-~~--------------LSgGq~qrv~laral~~~ 89 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGITPVYKPQY-ID--------------LSGGELQRVAIAAALLRN 89 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEEEEEEccc-CC--------------CCHHHHHHHHHHHHHhcC
Confidence 4899999999999999999887443 2344444431 1111111 11 000112233455556667
Q ss_pred eEEEEEeCCC---ChhhhhH---hhccCCCCCCCcEEEEEeccHHHHhh
Q 044214 131 KVLIVFDDVT---CFSQLES---LMGSLDWLTPVSRIILTTRNKQVLRN 173 (385)
Q Consensus 131 ~~LlVlDdv~---~~~~~~~---l~~~~~~~~~gs~ilvTtR~~~~~~~ 173 (385)
+-++++|+-. +...... ++..+.. ..+..||++|.+......
T Consensus 90 p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 90 ATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDY 137 (177)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHH
Confidence 7899999983 2222222 2222221 122567788877765553
No 279
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.62 E-value=0.0035 Score=54.06 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=29.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
++..+|+|+|.+|+||||||+.+...+...-...+++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 45679999999999999999999997754433445553
No 280
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0022 Score=63.62 Aligned_cols=53 Identities=28% Similarity=0.371 Sum_probs=43.8
Q ss_pred CCCccccchhHHHHHHhhc----CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 28 KNQLVGVESTVEEIESLLG----VESKGVYALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
.++-+|.++..+++.+.+. .++-+-+++..+|++|||||++|+.++..+..+|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 3467899999999998875 2445568999999999999999999999876655
No 281
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.61 E-value=0.0028 Score=55.09 Aligned_cols=80 Identities=19% Similarity=0.259 Sum_probs=49.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCC--------CCCC-------
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKD--------KNVM------- 117 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~------- 117 (385)
+.++|.|.+|+|||+|+..+++.... +.++++. +++ .+..+.++.+++...-..+ .++.
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~--d~~V~~~-iGe---r~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA--DVVVYAL-IGE---RGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT--TEEEEEE-ESE---CHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcccc--cceeeee-ccc---cchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 47899999999999999999987643 3345554 221 1144556666554331111 1111
Q ss_pred -----chHHHHHHHhCCceEEEEEeCCC
Q 044214 118 -----PYIDLNFRRLGHMKVLIVFDDVT 140 (385)
Q Consensus 118 -----~~~~~l~~~l~~k~~LlVlDdv~ 140 (385)
..++.++. .++++|+++||+.
T Consensus 90 ~~~a~t~AEyfrd--~G~dVlli~Dslt 115 (215)
T PF00006_consen 90 PYTALTIAEYFRD--QGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEEETHH
T ss_pred hccchhhhHHHhh--cCCceeehhhhhH
Confidence 22333333 6899999999994
No 282
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.60 E-value=0.0086 Score=55.89 Aligned_cols=45 Identities=22% Similarity=0.167 Sum_probs=35.0
Q ss_pred ccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 044214 31 LVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 31 ~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
++|+...++++.+.+..-...-..|.|+|..|+||+++|+.+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 478888888877776643333456889999999999999998874
No 283
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.60 E-value=0.0043 Score=57.24 Aligned_cols=36 Identities=31% Similarity=0.298 Sum_probs=29.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.+++.+.|.|||||||+|.+.+-...+....+.-++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS 37 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS 37 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE
Confidence 478999999999999999998887766665555554
No 284
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.59 E-value=0.0065 Score=56.29 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=28.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFL 86 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 86 (385)
+..+++++|++|+||||++..++..++..-..+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li 148 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA 148 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE
Confidence 468999999999999999999998776543333333
No 285
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.58 E-value=0.21 Score=45.41 Aligned_cols=145 Identities=11% Similarity=0.047 Sum_probs=80.1
Q ss_pred HHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC-------------CCCceEEEeeccccccCCCChHHHHH
Q 044214 38 VEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG-------------DFDGSCFLENVREESQIPGGLSCLRQ 104 (385)
Q Consensus 38 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-------------~f~~~~w~~~~~~~~~~~~~~~~l~~ 104 (385)
-++|...+..+ .-.....++|+.|+||+++|..++..+-. ..+...|+...... .. -.+
T Consensus 6 ~~~L~~~i~~~-rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~-~~-I~i----- 77 (290)
T PRK05917 6 WEALIQRVRDQ-KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG-RL-HSI----- 77 (290)
T ss_pred HHHHHHHHHcC-CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC-Cc-CcH-----
Confidence 45566666632 23567889999999999999999986532 12333333211000 00 011
Q ss_pred HHHHHHhCCCCCCchHHHHHHHh-----CCceEEEEEeCCCC--hhhhhHhhccCCCCCCCcEEEEEecc-HHHHhhcc-
Q 044214 105 KLLSNLLKDKNVMPYIDLNFRRL-----GHMKVLIVFDDVTC--FSQLESLMGSLDWLTPVSRIILTTRN-KQVLRNWR- 175 (385)
Q Consensus 105 ~ll~~l~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ilvTtR~-~~~~~~~~- 175 (385)
+.+..+.+.+ .++.-++|+|+++. .+....++..+..-.+++.+|++|.+ ..+.....
T Consensus 78 -------------dqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~S 144 (290)
T PRK05917 78 -------------ETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRS 144 (290)
T ss_pred -------------HHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHh
Confidence 2222333333 24556889999974 45667777666554456666666655 34433322
Q ss_pred ---ceecccCCCCCCchHHHHHHHHHhCCCc
Q 044214 176 ---VNAFKRNHPDVGNEKLSSNVMKYAQGVP 203 (385)
Q Consensus 176 ---~~~~~~~~~~~~~~~~~~~i~~~~~GlP 203 (385)
...|.........++.+..++...+|.+
T Consensus 145 Rcq~~~~~~~~~~~i~~~~~~~l~~~~~g~~ 175 (290)
T PRK05917 145 RSLSIHIPMEEKTLVSKEDIAYLIGYAQGKE 175 (290)
T ss_pred cceEEEccchhccCCCHHHHHHHHHHhCCCh
Confidence 2333332222234566777888888855
No 286
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.58 E-value=0.0064 Score=60.64 Aligned_cols=73 Identities=21% Similarity=0.273 Sum_probs=45.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhC-
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLG- 128 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~- 128 (385)
+.-++..++|++|.||||||.-++++. -|. ++=+. .|.. .....+-..|...+..+ ..+.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa--GYs-VvEIN----ASDe-Rt~~~v~~kI~~avq~~-----------s~l~a 384 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA--GYS-VVEIN----ASDE-RTAPMVKEKIENAVQNH-----------SVLDA 384 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc--Cce-EEEec----cccc-ccHHHHHHHHHHHHhhc-----------ccccc
Confidence 446799999999999999999999863 232 22332 2322 44444444444333222 2232
Q ss_pred -CceEEEEEeCCCC
Q 044214 129 -HMKVLIVFDDVTC 141 (385)
Q Consensus 129 -~k~~LlVlDdv~~ 141 (385)
.++.-||+|.++-
T Consensus 385 dsrP~CLViDEIDG 398 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDG 398 (877)
T ss_pred CCCcceEEEecccC
Confidence 6788899999974
No 287
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.56 E-value=0.0025 Score=60.44 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=39.8
Q ss_pred CCccccchhHHHHHHhhcCC------------CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 29 NQLVGVESTVEEIESLLGVE------------SKGVYALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
..++|.++..+.+...+... ...++.|.++|++|+|||++|+.++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 45899998888886655421 11246789999999999999999999876544
No 288
>PRK13947 shikimate kinase; Provisional
Probab=96.56 E-value=0.0019 Score=54.18 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
-|.|+|++|+||||+|+.+++++.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999998743
No 289
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.56 E-value=0.0097 Score=59.17 Aligned_cols=50 Identities=22% Similarity=0.399 Sum_probs=41.5
Q ss_pred CCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 27 NKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 27 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
....++|+...++++.+.+..-......|.|+|..|+|||++|+.+.+.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 45779999999999988887534444578899999999999999999854
No 290
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.55 E-value=0.005 Score=55.55 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=34.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
+.-+++.|+|.+|+|||++|.++......+...++|++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45679999999999999999999998877888899997
No 291
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.55 E-value=0.0023 Score=54.04 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
++|.+.|++|+||||+|+.+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4899999999999999999998753
No 292
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.54 E-value=0.0085 Score=56.48 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=59.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCC
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGH 129 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~ 129 (385)
..++-+-|||..|.|||.|+-.+|+.+...-..+ ........++-+.+.......+....+.+.+.+
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R-------------~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~ 126 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRR-------------VHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK 126 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccc-------------ccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3467899999999999999999998653311111 111122222222222211222456667777788
Q ss_pred ceEEEEEeCCC--Chh---hhhHhhccCCCCCCCcEEEEEec
Q 044214 130 MKVLIVFDDVT--CFS---QLESLMGSLDWLTPVSRIILTTR 166 (385)
Q Consensus 130 k~~LlVlDdv~--~~~---~~~~l~~~~~~~~~gs~ilvTtR 166 (385)
+..||++|.+. +.. .+..++..+- ..|..++.||.
T Consensus 127 ~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvvlVaTSN 166 (362)
T PF03969_consen 127 ESRLLCFDEFQVTDIADAMILKRLFEALF--KRGVVLVATSN 166 (362)
T ss_pred cCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCCEEEecCC
Confidence 88899999983 332 2555555543 35654555553
No 293
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.031 Score=58.00 Aligned_cols=109 Identities=17% Similarity=0.227 Sum_probs=71.7
Q ss_pred CCccccchhHHHHHHhhcCCC------CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHH
Q 044214 29 NQLVGVESTVEEIESLLGVES------KGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCL 102 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~~------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l 102 (385)
...+|-++.+..+.+.+.... .......+.|+.|+|||-||++++.-+-+..+..+-+. +.+.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-----------mse~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-----------MSEF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-----------hhhh
Confidence 457888888888888776311 13557789999999999999999998866655554443 2222
Q ss_pred HHHHHHHHhCCCC---CCchHHHHHHHhCCce-EEEEEeCCCC--hhhhhHhhc
Q 044214 103 RQKLLSNLLKDKN---VMPYIDLNFRRLGHMK-VLIVFDDVTC--FSQLESLMG 150 (385)
Q Consensus 103 ~~~ll~~l~~~~~---~~~~~~~l~~~l~~k~-~LlVlDdv~~--~~~~~~l~~ 150 (385)
.. ...+.+..+ ..+....|-+.++.++ .+|+||||+. ......+..
T Consensus 631 ~e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq 682 (898)
T KOG1051|consen 631 QE--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQ 682 (898)
T ss_pred hh--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHH
Confidence 22 233333322 2256667888888877 4778999973 444443333
No 294
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.52 E-value=0.0096 Score=57.58 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=36.4
Q ss_pred ccccchhHHHHHHhhc-----CCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 31 LVGVESTVEEIESLLG-----VESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 31 ~vGR~~~l~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
+-=-..-+.++..||. ...-+.++..|+|++|+||||-.+.++..+
T Consensus 84 LAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 84 LAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 3334456788888888 455667899999999999999999888753
No 295
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.51 E-value=0.019 Score=53.06 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=32.3
Q ss_pred HHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh------CCCCceEEEe
Q 044214 40 EIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS------GDFDGSCFLE 87 (385)
Q Consensus 40 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~------~~f~~~~w~~ 87 (385)
.|-++|..+=..-+++-|+|.+|+|||+|+.+++-... ..-..++|++
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 34444543334467899999999999999998874321 1124677886
No 296
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.51 E-value=0.012 Score=49.31 Aligned_cols=57 Identities=11% Similarity=0.070 Sum_probs=38.1
Q ss_pred chHHHHHHHhCCceEEEEEeCC----CChhhhhH--hhccCCCCCCCcEEEEEeccHHHHhhccc
Q 044214 118 PYIDLNFRRLGHMKVLIVFDDV----TCFSQLES--LMGSLDWLTPVSRIILTTRNKQVLRNWRV 176 (385)
Q Consensus 118 ~~~~~l~~~l~~k~~LlVlDdv----~~~~~~~~--l~~~~~~~~~gs~ilvTtR~~~~~~~~~~ 176 (385)
+..-.+.+.+-+++-+|+-|.- +....|+- ++..+ +..|..|+++|.+.++...+..
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei--nr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI--NRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH--hhcCcEEEEEeccHHHHHhccC
Confidence 3344566677788999999976 33333332 23333 2468999999999988877654
No 297
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.50 E-value=0.0039 Score=62.10 Aligned_cols=47 Identities=23% Similarity=0.429 Sum_probs=38.4
Q ss_pred CCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 28 KNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
-++++|.+..++.+...+.. .....+.|+|.+|+|||++|+.+++..
T Consensus 64 f~~iiGqs~~i~~l~~al~~--~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCG--PNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35699999999999987763 334567899999999999999998743
No 298
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.49 E-value=0.014 Score=49.44 Aligned_cols=115 Identities=17% Similarity=0.102 Sum_probs=62.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHH--HH--HhC-----CCCCC-----
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLL--SN--LLK-----DKNVM----- 117 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll--~~--l~~-----~~~~~----- 117 (385)
...|.|+|-.|-||||.|...+-+...+--.+..+....... . .+-...+..+- .. .+. ..+..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~-~-~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW-S-TGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC-c-cCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 357899999999999999999887654433344443332211 1 22233333210 00 000 00000
Q ss_pred --chHHHHHHHhCC-ceEEEEEeCCC-----ChhhhhHhhccCCCCCCCcEEEEEeccH
Q 044214 118 --PYIDLNFRRLGH-MKVLIVFDDVT-----CFSQLESLMGSLDWLTPVSRIILTTRNK 168 (385)
Q Consensus 118 --~~~~~l~~~l~~-k~~LlVlDdv~-----~~~~~~~l~~~~~~~~~gs~ilvTtR~~ 168 (385)
+.....++.+.. +-=|+|||.+. ..-..+++...+.....+..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 233444455544 45699999993 2222333443343344677899999975
No 299
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.49 E-value=0.0063 Score=63.26 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=41.0
Q ss_pred CCccccchhHHHHHHhhcC----CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 29 NQLVGVESTVEEIESLLGV----ESKGVYALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
...+|.++..+++.++|.. +......+.++|++|+||||+|+.++..+...|
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3589999999999887762 122345799999999999999999998765443
No 300
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.48 E-value=0.022 Score=48.44 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
...++.|.|.+|+||||+|+.+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999987653
No 301
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.47 E-value=0.002 Score=54.67 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
+|.|+|++|+||||+|+.++++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999865
No 302
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.47 E-value=0.014 Score=52.38 Aligned_cols=87 Identities=13% Similarity=0.112 Sum_probs=52.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh----CCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCC--------CCC--
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS----GDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDK--------NVM-- 117 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~----~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~--------~~~-- 117 (385)
-+.++|.|-.|+|||+|+..++++.. .+-+..++.. +++.. ....+++.++...-.... ++.
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~-IGeR~---rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~ 144 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA-MGITM---EDARFFKDDFEETGALERVVLFLNLANDPTI 144 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE-ecccc---HHHHHHHHHhhhcCCcceEEEEEecCCCCHH
Confidence 45789999999999999999887653 2234555554 33321 556666666655311110 111
Q ss_pred ------chHHHHHHHh---CCceEEEEEeCCCCh
Q 044214 118 ------PYIDLNFRRL---GHMKVLIVFDDVTCF 142 (385)
Q Consensus 118 ------~~~~~l~~~l---~~k~~LlVlDdv~~~ 142 (385)
-..-.+.+++ .++++|+++||+-..
T Consensus 145 ~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 145 ERIITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 1122233333 368999999999543
No 303
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.47 E-value=0.013 Score=49.29 Aligned_cols=112 Identities=21% Similarity=0.194 Sum_probs=57.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHH--------------HHHHHhCCCCCCc
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQK--------------LLSNLLKDKNVMP 118 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~--------------ll~~l~~~~~~~~ 118 (385)
.+++|.|..|+|||||.+.++.... ...+.+++.. ..... ......... +...+ -.....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g-~~~~~--~~~~~~~~~i~~~~q~~~~~~~tv~~~l--LS~G~~ 102 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDG-ADISQ--WDPNELGDHVGYLPQDDELFSGSIAENI--LSGGQR 102 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECC-EEccc--CCHHHHHhheEEECCCCccccCcHHHHC--cCHHHH
Confidence 4899999999999999999987543 2344444431 11110 111111100 00000 000002
Q ss_pred hHHHHHHHhCCceEEEEEeCCC---Chhh---hhHhhccCCCCCCCcEEEEEeccHHHHh
Q 044214 119 YIDLNFRRLGHMKVLIVFDDVT---CFSQ---LESLMGSLDWLTPVSRIILTTRNKQVLR 172 (385)
Q Consensus 119 ~~~~l~~~l~~k~~LlVlDdv~---~~~~---~~~l~~~~~~~~~gs~ilvTtR~~~~~~ 172 (385)
..-.+.+.+-.++=++++|+.. +... +..++..+. ..|..||++|.+.+...
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH
Confidence 2334455556677789999984 2222 323333332 23667888888776553
No 304
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.46 E-value=0.019 Score=49.62 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=56.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCC---CC-ceE-EEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhC
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISGD---FD-GSC-FLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLG 128 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~~---f~-~~~-w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~ 128 (385)
-..|.|++|+|||||.+.+++-+... |. ..+ .+..-++.........+.....--++....+ ...-++...-.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cp--k~~gmmmaIrs 216 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCP--KAEGMMMAIRS 216 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccch--HHHHHHHHHHh
Confidence 36789999999999999999865443 32 222 2221111100000111111111111111111 22222222223
Q ss_pred CceEEEEEeCCCChhhhhHhhccCCCCCCCcEEEEEecc
Q 044214 129 HMKVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRN 167 (385)
Q Consensus 129 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~ 167 (385)
-.+=++|+|.+-..++...+...+. .|-+++.|..-
T Consensus 217 m~PEViIvDEIGt~~d~~A~~ta~~---~GVkli~TaHG 252 (308)
T COG3854 217 MSPEVIIVDEIGTEEDALAILTALH---AGVKLITTAHG 252 (308)
T ss_pred cCCcEEEEeccccHHHHHHHHHHHh---cCcEEEEeecc
Confidence 4677999999988877777766653 67777777653
No 305
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.46 E-value=0.064 Score=52.06 Aligned_cols=53 Identities=21% Similarity=0.168 Sum_probs=36.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh-CCCCceEEEeeccccccCCCChHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS-GDFDGSCFLENVREESQIPGGLSCLRQKLLSNLL 111 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~ 111 (385)
-.++.|.|.+|+|||++|..++.... ..-..++|++ . . .+..++...++....
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS-l-----E-m~~~~l~~Rl~~~~~ 247 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS-L-----E-MSAEQLGERLLASKS 247 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE-C-----C-CCHHHHHHHHHHHHc
Confidence 45889999999999999999997653 3333455654 2 1 456677777766543
No 306
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.46 E-value=0.0081 Score=50.44 Aligned_cols=112 Identities=18% Similarity=0.237 Sum_probs=58.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHH--------------HHHHHHhCCCCCCc
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQ--------------KLLSNLLKDKNVMP 118 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~--------------~ll~~l~~~~~~~~ 118 (385)
.+++|.|..|.|||||.+.++.... ...+.+++... .... ........ .+...+. .....
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~-~~~~--~~~~~~~~~i~~~~~~~~~~~~t~~e~lL--S~G~~ 102 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGV-DLRD--LDLESLRKNIAYVPQDPFLFSGTIRENIL--SGGQR 102 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCE-Ehhh--cCHHHHHhhEEEEcCCchhccchHHHHhh--CHHHH
Confidence 4899999999999999999987543 23455554311 1100 00000000 0000000 00002
Q ss_pred hHHHHHHHhCCceEEEEEeCCC---Chhh---hhHhhccCCCCCCCcEEEEEeccHHHHhh
Q 044214 119 YIDLNFRRLGHMKVLIVFDDVT---CFSQ---LESLMGSLDWLTPVSRIILTTRNKQVLRN 173 (385)
Q Consensus 119 ~~~~l~~~l~~k~~LlVlDdv~---~~~~---~~~l~~~~~~~~~gs~ilvTtR~~~~~~~ 173 (385)
..-.+.+.+-.++-++++|+-. +... +..++..+. .+..||++|.+.+....
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh
Confidence 2233555566778899999984 2222 333333332 34668888887765543
No 307
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.45 E-value=0.0045 Score=51.15 Aligned_cols=113 Identities=19% Similarity=0.132 Sum_probs=59.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhC---CCCCCchHHHHHHHhCC
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLK---DKNVMPYIDLNFRRLGH 129 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~---~~~~~~~~~~l~~~l~~ 129 (385)
.+++|+|..|.|||||++.++..+. ...+.+++... .... ...... ...+.. -.......-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~-~~~~--~~~~~~----~~~i~~~~qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGK-DIAK--LPLEEL----RRRIGYVPQLSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCE-Eccc--CCHHHH----HhceEEEeeCCHHHHHHHHHHHHHhc
Confidence 5899999999999999999987543 34555655421 1110 111111 111110 00111223335555556
Q ss_pred ceEEEEEeCCC---ChhhhhHhhccCCCC-CCCcEEEEEeccHHHHhh
Q 044214 130 MKVLIVFDDVT---CFSQLESLMGSLDWL-TPVSRIILTTRNKQVLRN 173 (385)
Q Consensus 130 k~~LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~ilvTtR~~~~~~~ 173 (385)
.+=++++|+.. +......+...+... ..+..++++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 67899999984 333333332222111 124568888877665544
No 308
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.45 E-value=0.0028 Score=53.87 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=30.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.+++.|+|+.|+|||||+..+.+...+.|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 368999999999999999999999888886555554
No 309
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.44 E-value=0.0025 Score=51.71 Aligned_cols=24 Identities=38% Similarity=0.654 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+|.|.|++|+||||+|+.+++.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999998753
No 310
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.43 E-value=0.039 Score=50.02 Aligned_cols=36 Identities=17% Similarity=-0.022 Sum_probs=28.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGD-FDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~~ 87 (385)
-.++.|.|.+|+||||++.+++...... -..++|++
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 3588899999999999999998875433 45677776
No 311
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.43 E-value=0.0081 Score=58.96 Aligned_cols=89 Identities=17% Similarity=0.118 Sum_probs=51.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCC-CceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCC---------chH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDF-DGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVM---------PYI 120 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~---------~~~ 120 (385)
+-+..+|+|.+|+|||||++.+++.+.... +..+++..+.+-. ..+.++.+.+-..+.....+. ...
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERp---eEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~a 491 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERP---EEVTDMQRSVKGEVIASTFDRPPSDHTTVAELA 491 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCch---hhHHHHHHhccceEEEECCCCCHHHHHHHHHHH
Confidence 345788999999999999999999775433 4444555444332 333333333211111111111 222
Q ss_pred HHHHHHh--CCceEEEEEeCCCCh
Q 044214 121 DLNFRRL--GHMKVLIVFDDVTCF 142 (385)
Q Consensus 121 ~~l~~~l--~~k~~LlVlDdv~~~ 142 (385)
-.+.+++ .++.+||++|++...
T Consensus 492 i~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 492 IERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHHHcCCCEEEEEeCchHH
Confidence 2233333 579999999999543
No 312
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.43 E-value=0.0041 Score=59.04 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=40.0
Q ss_pred CCccccchhHHHHHHhhcCC--------C----CCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 29 NQLVGVESTVEEIESLLGVE--------S----KGVYALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~--------~----~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
..++|.++..+.+..++... . ...+.+.++|++|+|||+||+.++..+...|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 45899999998888776420 0 1146789999999999999999999775543
No 313
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.0081 Score=56.85 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
-|-..++|++|.|||++..++++.+
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc
Confidence 4678899999999999999999865
No 314
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.40 E-value=0.0026 Score=53.16 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=20.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhC
Q 044214 55 LGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 55 v~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
|.|+|.+|+|||||++.+++.+++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999998754
No 315
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.40 E-value=0.012 Score=56.91 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=52.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCC--------CCCC------
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKD--------KNVM------ 117 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~------ 117 (385)
-+.++|.|.+|+|||||+..++.......+.++-+..+++. ...+.+++.++...-... .++.
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER---~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER---TREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC---cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 46799999999999999999987665443333333333332 245666666665432111 1110
Q ss_pred --chHHHHHHHh---CCceEEEEEeCCCC
Q 044214 118 --PYIDLNFRRL---GHMKVLIVFDDVTC 141 (385)
Q Consensus 118 --~~~~~l~~~l---~~k~~LlVlDdv~~ 141 (385)
...-.+.+++ +++++||++|++..
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 1122344444 67999999999953
No 316
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.39 E-value=0.0056 Score=61.30 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=41.2
Q ss_pred CCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 27 NKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 27 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.++.-+.|.+..+.|.+.......+..+|.|+|++|+||||+|+.++.++..
T Consensus 367 ~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 367 EIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 3455677877777777776655555668999999999999999999998754
No 317
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.052 Score=52.06 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
+..+++++|..|+||||++..++.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999988753
No 318
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.36 E-value=0.052 Score=55.71 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..+++++|+.|+||||.+.+++..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4799999999999999999999765
No 319
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.36 E-value=0.0029 Score=51.45 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
+|.|.|.+|+||||+|+.++.+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 320
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.36 E-value=0.003 Score=57.37 Aligned_cols=126 Identities=20% Similarity=0.173 Sum_probs=68.1
Q ss_pred CccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHH
Q 044214 30 QLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSN 109 (385)
Q Consensus 30 ~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~ 109 (385)
.+.-.....+.+.+.|...-.....|.|.|..|+||||++..+...+...-..++-+.+..+......... .
T Consensus 105 ~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~--------~ 176 (270)
T PF00437_consen 105 DLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQI--------Q 176 (270)
T ss_dssp CCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEE--------E
T ss_pred hccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceE--------E
Confidence 33333334455555555321234689999999999999999999877665122222322111100000000 0
Q ss_pred HhCCCCCCchHHHHHHHhCCceEEEEEeCCCChhhhhHhhccCCCCCCCcEE-EEEecc
Q 044214 110 LLKDKNVMPYIDLNFRRLGHMKVLIVFDDVTCFSQLESLMGSLDWLTPVSRI-ILTTRN 167 (385)
Q Consensus 110 l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~i-lvTtR~ 167 (385)
+..........+.+...|+..+=.++++.+.+.+.+..+. .. ..|..+ +-|...
T Consensus 177 ~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~-a~---~tGh~~~~tT~Ha 231 (270)
T PF00437_consen 177 IQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQ-AA---NTGHLGSLTTLHA 231 (270)
T ss_dssp EEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHH-HH---HTT-EEEEEEEE-
T ss_pred EEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHH-hh---ccCCceeeeeeec
Confidence 0000122366778888899888899999998888777743 32 246667 555543
No 321
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.35 E-value=0.0037 Score=54.25 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=24.3
Q ss_pred CCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 044214 47 VESKGVYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 47 ~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.+....+.|+|+|++|+|||||+..+.+.
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34456789999999999999999998754
No 322
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.013 Score=49.30 Aligned_cols=112 Identities=20% Similarity=0.174 Sum_probs=59.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccc--------------cCC--CChHHHHHHHHHHHhCCCC
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREES--------------QIP--GGLSCLRQKLLSNLLKDKN 115 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~--------------~~~--~~~~~l~~~ll~~l~~~~~ 115 (385)
-.+++|+|..|.|||||++.++.... ...+.+++.. .... +.+ +.-..+...+. -..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g-~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~-----LS~ 98 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLG-KDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK-----LSG 98 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECC-EEcccchHhhhccEEEEecCCccccCCcHHHHhh-----cCH
Confidence 35899999999999999999987432 2344444431 1110 000 00001111110 000
Q ss_pred CCchHHHHHHHhCCceEEEEEeCCCC---hhh---hhHhhccCCCCCCCcEEEEEeccHHHHh
Q 044214 116 VMPYIDLNFRRLGHMKVLIVFDDVTC---FSQ---LESLMGSLDWLTPVSRIILTTRNKQVLR 172 (385)
Q Consensus 116 ~~~~~~~l~~~l~~k~~LlVlDdv~~---~~~---~~~l~~~~~~~~~gs~ilvTtR~~~~~~ 172 (385)
.....-.+.+.+..++-++++|+... ... +..++..+. ..|..||++|.+.....
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~ 159 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHH
Confidence 00223345566677888999999842 222 333333332 13567888888876554
No 323
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.35 E-value=0.0032 Score=53.25 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.+++|+|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999988754
No 324
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.34 E-value=0.0076 Score=50.40 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=25.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
...+++|+|..|+|||||+..+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 46799999999999999999999877653
No 325
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=96.34 E-value=0.0055 Score=56.53 Aligned_cols=35 Identities=29% Similarity=0.317 Sum_probs=26.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
+++.+.|-|||||||+|...+-....+-..+.-++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS 36 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVS 36 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEee
Confidence 58899999999999999998876655544454554
No 326
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.34 E-value=0.0067 Score=57.14 Aligned_cols=105 Identities=14% Similarity=0.040 Sum_probs=60.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCc---eEEEeeccccccCCCChHHHHH--HHHHHHhCCCCCCchHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDG---SCFLENVREESQIPGGLSCLRQ--KLLSNLLKDKNVMPYIDLNFRR 126 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~---~~w~~~~~~~~~~~~~~~~l~~--~ll~~l~~~~~~~~~~~~l~~~ 126 (385)
-..|.|+|+.|+||||+++.+.+.+....+. ++.+.+.-+ .....+.. ....+.............++..
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE-----~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~a 208 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE-----FVYDEIETISASVCQSEIPRHLNNFAAGVRNA 208 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce-----EeccccccccceeeeeeccccccCHHHHHHHH
Confidence 3589999999999999999999877544331 222221111 11111000 0001100000112556777888
Q ss_pred hCCceEEEEEeCCCChhhhhHhhccCCCCCCCcEEEEEe
Q 044214 127 LGHMKVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTT 165 (385)
Q Consensus 127 l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTt 165 (385)
|+..+-.+++..+.+.+.....+.... .|.. ++||
T Consensus 209 LR~~Pd~i~vGEiRd~et~~~al~aa~---tGh~-v~tT 243 (358)
T TIGR02524 209 LRRKPHAILVGEARDAETISAALEAAL---TGHP-VYTT 243 (358)
T ss_pred hccCCCEEeeeeeCCHHHHHHHHHHHH---cCCc-EEEe
Confidence 999999999999988887765544322 3444 4555
No 327
>PRK04132 replication factor C small subunit; Provisional
Probab=96.34 E-value=0.12 Score=54.03 Aligned_cols=95 Identities=17% Similarity=0.240 Sum_probs=51.9
Q ss_pred Ec--CCCchHHHHHHHHHHHh-hCCCCc-eEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCceEE
Q 044214 58 WG--IGGIGKTTIARAIFDKI-SGDFDG-SCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHMKVL 133 (385)
Q Consensus 58 ~G--~gGiGKTtLA~~~~~~~-~~~f~~-~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~L 133 (385)
.| +.++||||+|..+++++ .+.+.. .+-+. .+.. .+.. ..++++.......+ .-..+.-+
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElN-ASd~----rgid-~IR~iIk~~a~~~~----------~~~~~~KV 633 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGENWRHNFLELN-ASDE----RGIN-VIREKVKEFARTKP----------IGGASFKI 633 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhcccccCeEEEEe-CCCc----ccHH-HHHHHHHHHHhcCC----------cCCCCCEE
Confidence 46 78899999999999976 333322 23332 2221 2333 23333332221110 00124579
Q ss_pred EEEeCCCCh--hhhhHhhccCCCCCCCcEEEEEeccH
Q 044214 134 IVFDDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK 168 (385)
Q Consensus 134 lVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~ 168 (385)
+|+|+++.. .+...|+..+......+++|+++.+.
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~ 670 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 670 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCCh
Confidence 999999754 45666666665444566666665543
No 328
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.34 E-value=0.01 Score=52.30 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.|.|.|++|+||||+|+.+++++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999865
No 329
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.33 E-value=0.035 Score=51.87 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=31.4
Q ss_pred HHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh--C----CCCceEEEe
Q 044214 41 IESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS--G----DFDGSCFLE 87 (385)
Q Consensus 41 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~----~f~~~~w~~ 87 (385)
|-++|..+=..-.++-|+|.+|+|||+|+.+++-..+ . .-..++|++
T Consensus 115 LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 115 LDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred HHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 3334443334467889999999999999999874321 1 124677887
No 330
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0077 Score=59.45 Aligned_cols=51 Identities=22% Similarity=0.301 Sum_probs=36.8
Q ss_pred ccccchhHHHHHHhhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC
Q 044214 31 LVGVESTVEEIESLLGV-----------ESKGVYALGIWGIGGIGKTTIARAIFDKISGDFD 81 (385)
Q Consensus 31 ~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 81 (385)
+=|-++...+|.....- +-+.++-|.++|++|+|||++|+.+++..+-.|-
T Consensus 436 IGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFl 497 (693)
T KOG0730|consen 436 IGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFL 497 (693)
T ss_pred ccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCee
Confidence 34466666666654321 2255788999999999999999999998766653
No 331
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.0033 Score=53.53 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=23.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 45899999999999999999999876
No 332
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.32 E-value=0.0056 Score=49.54 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=26.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh-CCCCceEEEe
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKIS-GDFDGSCFLE 87 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~w~~ 87 (385)
++|.|+|..|+|||||++.+.+.+. ..+...++.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 4799999999999999999999876 4455554554
No 333
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.32 E-value=0.0028 Score=53.89 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
+|+|.|.+|+||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 334
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.31 E-value=0.0029 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.680 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
++.|+|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998863
No 335
>PRK15453 phosphoribulokinase; Provisional
Probab=96.31 E-value=0.0068 Score=54.47 Aligned_cols=29 Identities=24% Similarity=0.270 Sum_probs=25.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.+..+|+|.|.+|+||||+|+.+.+.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45679999999999999999999986654
No 336
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.31 E-value=0.049 Score=45.58 Aligned_cols=76 Identities=9% Similarity=0.016 Sum_probs=42.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCC---CchHHHHHHHhCC--
Q 044214 55 LGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNV---MPYIDLNFRRLGH-- 129 (385)
Q Consensus 55 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~---~~~~~~l~~~l~~-- 129 (385)
+.|.|.+|+|||++|.+++.. .....+++... .. .+. ++...+.+........ .+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~-~~----~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATA-EA----FDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEcc-Cc----CCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC
Confidence 679999999999999999865 22355566422 11 322 3444443322222211 1444445554422
Q ss_pred ceEEEEEeCC
Q 044214 130 MKVLIVFDDV 139 (385)
Q Consensus 130 k~~LlVlDdv 139 (385)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 2337999998
No 337
>PRK13949 shikimate kinase; Provisional
Probab=96.31 E-value=0.0035 Score=52.57 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.|.|+|++|+||||+++.+++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 338
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.31 E-value=0.011 Score=53.79 Aligned_cols=28 Identities=36% Similarity=0.417 Sum_probs=24.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..+.+|+|.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999988877654
No 339
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.30 E-value=0.11 Score=48.24 Aligned_cols=122 Identities=11% Similarity=0.069 Sum_probs=62.9
Q ss_pred HHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeecccc--------ccCCCChHHHHHHHHHH
Q 044214 38 VEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREE--------SQIPGGLSCLRQKLLSN 109 (385)
Q Consensus 38 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~--------~~~~~~~~~l~~~ll~~ 109 (385)
.+.+.+.+..+ .-...+.++|+.|+||+++|..+++.+-..-.... ...+.. ... +++..+..
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~--~~Cg~C~sC~~~~~g~H-PD~~~i~p----- 81 (325)
T PRK06871 11 YQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD--QPCGQCHSCHLFQAGNH-PDFHILEP----- 81 (325)
T ss_pred HHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHhcCCC-CCEEEEcc-----
Confidence 34555555522 23467889999999999999999986532110000 000000 000 11110000
Q ss_pred HhCCCCCCchHHHHHHHhC-----CceEEEEEeCCCC--hhhhhHhhccCCCCCCCcEEEEEeccH
Q 044214 110 LLKDKNVMPYIDLNFRRLG-----HMKVLIVFDDVTC--FSQLESLMGSLDWLTPVSRIILTTRNK 168 (385)
Q Consensus 110 l~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ilvTtR~~ 168 (385)
..+..-.++.+..+.+.+. +++=++|+|+++. ......++..+.+-.++..+|++|.+.
T Consensus 82 ~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~ 147 (325)
T PRK06871 82 IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLS 147 (325)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 0000011233344444432 4566888999974 445666666665545666677776654
No 340
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.29 E-value=0.0081 Score=54.12 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=30.0
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
..-.++.|.|.+|+|||++|.+++......-..+++++
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34578999999999999999998875444455677776
No 341
>PRK13948 shikimate kinase; Provisional
Probab=96.29 E-value=0.0036 Score=53.04 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
....|.++|+.|+||||+++.+++++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999998764
No 342
>PRK08506 replicative DNA helicase; Provisional
Probab=96.29 E-value=0.058 Score=53.00 Aligned_cols=53 Identities=21% Similarity=0.095 Sum_probs=37.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLL 111 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~ 111 (385)
-.++.|.|.+|+|||++|..++......-..+++++ . . .+..++...++....
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fS-l-----E-Ms~~ql~~Rlla~~s 244 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFS-L-----E-MPAEQLMLRMLSAKT 244 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEe-C-----c-CCHHHHHHHHHHHhc
Confidence 458999999999999999999987643333455554 1 2 556677777766543
No 343
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.29 E-value=0.0029 Score=51.07 Aligned_cols=27 Identities=22% Similarity=0.583 Sum_probs=22.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
.|+|+|+.|+|||||++.+.+.....|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 378999999999999999998654443
No 344
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.056 Score=47.28 Aligned_cols=47 Identities=23% Similarity=0.474 Sum_probs=35.6
Q ss_pred CCccc-cchhHHHHHHhhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 044214 29 NQLVG-VESTVEEIESLLGV-----------ESKGVYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 29 ~~~vG-R~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
-+.|| -+..++++.+.+.. +-.+++-+.++|++|.|||-||+++++.
T Consensus 146 YeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh 204 (404)
T KOG0728|consen 146 YEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 204 (404)
T ss_pred HHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh
Confidence 34565 56777777776642 1245678999999999999999999975
No 345
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.27 E-value=0.003 Score=54.47 Aligned_cols=23 Identities=43% Similarity=0.710 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
+|+|.|.+|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998866
No 346
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.013 Score=50.17 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
-.+++|+|..|+|||||++.++..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 347
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.0054 Score=62.50 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=37.6
Q ss_pred CCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 29 NQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+..+||++|++++...|.....+- -.++|.+|||||+++.-++.++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNN--PvLiGEpGVGKTAIvEGLA~rIv 216 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNN--PVLVGEPGVGKTAIVEGLAQRIV 216 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCC--CeEecCCCCCHHHHHHHHHHHHh
Confidence 469999999999999998422221 23679999999999999999763
No 348
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.27 E-value=0.017 Score=55.60 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=52.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCC--------CCCC-----
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKD--------KNVM----- 117 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~----- 117 (385)
+-+.++|.|.+|+|||+|+..++.........++-+..+++.. ..+.+++..+...-... .++.
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~---rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERT---REGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCc---hHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 3467999999999999999999886644333333333343321 45666666664431111 1111
Q ss_pred ---chHHHHHHHh---CCceEEEEEeCCCC
Q 044214 118 ---PYIDLNFRRL---GHMKVLIVFDDVTC 141 (385)
Q Consensus 118 ---~~~~~l~~~l---~~k~~LlVlDdv~~ 141 (385)
...-.+.+++ +++++||++||+..
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 1222334444 56899999999954
No 349
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.26 E-value=0.0042 Score=53.37 Aligned_cols=25 Identities=36% Similarity=0.311 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..+|.|.|.+|+||||+|+.++++.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999874
No 350
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.26 E-value=0.0057 Score=52.01 Aligned_cols=33 Identities=21% Similarity=0.114 Sum_probs=26.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 55 LGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 55 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
+.|.|.+|+|||+||.+++......-..++|++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999999886544445677776
No 351
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.26 E-value=0.0038 Score=51.22 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 044214 55 LGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 55 v~I~G~gGiGKTtLA~~~~~~~ 76 (385)
|.|+|++|+||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999876
No 352
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.25 E-value=0.0033 Score=51.75 Aligned_cols=20 Identities=35% Similarity=0.604 Sum_probs=18.7
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 044214 54 ALGIWGIGGIGKTTIARAIF 73 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~ 73 (385)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 353
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.25 E-value=0.042 Score=49.54 Aligned_cols=154 Identities=14% Similarity=0.199 Sum_probs=84.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH--HhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCC------------
Q 044214 52 VYALGIWGIGGIGKTTIARAIFD--KISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVM------------ 117 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~--~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~------------ 117 (385)
+-+.+|+|+.|+||++|.+.+.. .+..-=+.++|+.--...... ......-.++.+.-....++.
T Consensus 87 P~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp-~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~P~ 165 (369)
T PF02456_consen 87 PFIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPP-QEITAWETQLCEGNYDCGPDGTIVPQTGTFRPK 165 (369)
T ss_pred ceEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCH-HHHHHHHHHHHhcCCCCCCCCeecccccccccc
Confidence 55678899999999999998875 344445667777522221111 223333334444322222110
Q ss_pred ------------------chHHHHHHHhCCceEEEEEeCCC----ChhhhhHhhccCCC-------CCCCcEEEEEeccH
Q 044214 118 ------------------PYIDLNFRRLGHMKVLIVFDDVT----CFSQLESLMGSLDW-------LTPVSRIILTTRNK 168 (385)
Q Consensus 118 ------------------~~~~~l~~~l~~k~~LlVlDdv~----~~~~~~~l~~~~~~-------~~~gs~ilvTtR~~ 168 (385)
.-.....+.-+..++-||+|.+- .......++.+++. .+.|.-|+|.-.+.
T Consensus 166 Fv~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDECMe~Lg~~~~is~fFHAlPSKL~~rfp~CTgy~VfVVLHNm 245 (369)
T PF02456_consen 166 FVEMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDECMEKLGSHKSISKFFHALPSKLHDRFPKCTGYYVFVVLHNM 245 (369)
T ss_pred ceeecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHHHHHhcCCCChhHHHhcCcHHHhhhccCCceeEEEEEeccC
Confidence 12234555667789999999983 23345555555542 12455565544432
Q ss_pred HHHhhcc--c---------eecccCCCCCCchHHHHHHHHHhCCCccchhHH
Q 044214 169 QVLRNWR--V---------NAFKRNHPDVGNEKLSSNVMKYAQGVPLALKVL 209 (385)
Q Consensus 169 ~~~~~~~--~---------~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 209 (385)
.--...+ + +... +.-.-.++.+-|-.+.+|+|.+|.++
T Consensus 246 nPR~d~gGNI~~LKiqAK~HIiS---p~~~p~QlsRFin~yt~glp~~i~~L 294 (369)
T PF02456_consen 246 NPRRDIGGNIANLKIQAKCHIIS---PKMHPSQLSRFINNYTKGLPTAISLL 294 (369)
T ss_pred CcccccCCCccchhhhceeeeec---CCCCHHHHHHHHHHhccCCChhHHHH
Confidence 1111110 0 1121 11122467788889999999999754
No 354
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.25 E-value=0.011 Score=52.59 Aligned_cols=48 Identities=10% Similarity=0.051 Sum_probs=35.1
Q ss_pred HHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 40 EIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 40 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.|-++|..+=..-.++.|.|.+|+|||+||.++.......-..++|++
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 344445433345679999999999999999998875434556777886
No 355
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.25 E-value=0.0077 Score=52.54 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999999884
No 356
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.24 E-value=0.0033 Score=55.10 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+|+|.|.+|+||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998775
No 357
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.24 E-value=0.11 Score=48.56 Aligned_cols=158 Identities=13% Similarity=0.086 Sum_probs=79.4
Q ss_pred hHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC--C---CceEEEeecc-ccccCCCChHHHHHHHHHHH
Q 044214 37 TVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGD--F---DGSCFLENVR-EESQIPGGLSCLRQKLLSNL 110 (385)
Q Consensus 37 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f---~~~~w~~~~~-~~~~~~~~~~~l~~~ll~~l 110 (385)
..+++.+.+.. +.-...+.++|+.|+||+++|..++..+-.. - .+..--++.. ..... +++..+
T Consensus 10 ~~~~l~~~~~~-~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~H-PD~~~i-------- 79 (334)
T PRK07993 10 DYEQLVGSYQA-GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTH-PDYYTL-------- 79 (334)
T ss_pred HHHHHHHHHHc-CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCC-CCEEEE--------
Confidence 34556666653 2235678899999999999999999865221 1 1100000000 00000 111100
Q ss_pred hCCC----CCCchHHHHHHHhC-----CceEEEEEeCCCC--hhhhhHhhccCCCCCCCcEEEEEeccH-HHHhhccc--
Q 044214 111 LKDK----NVMPYIDLNFRRLG-----HMKVLIVFDDVTC--FSQLESLMGSLDWLTPVSRIILTTRNK-QVLRNWRV-- 176 (385)
Q Consensus 111 ~~~~----~~~~~~~~l~~~l~-----~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ilvTtR~~-~~~~~~~~-- 176 (385)
.+.. -.++.+..+.+.+. +++=++|+|+++. .+....++..+.+-..++.+|++|.+. .+......
T Consensus 80 ~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC 159 (334)
T PRK07993 80 TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC 159 (334)
T ss_pred ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 0010 11133444444442 4666899999974 445666666665444566666666553 34433222
Q ss_pred --eecccC----------CCCCCchHHHHHHHHHhCCCcc
Q 044214 177 --NAFKRN----------HPDVGNEKLSSNVMKYAQGVPL 204 (385)
Q Consensus 177 --~~~~~~----------~~~~~~~~~~~~i~~~~~GlPL 204 (385)
..|... .......+.+..+++.++|.|.
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~~~~~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSREVTMSQDALLAALRLSAGAPG 199 (334)
T ss_pred ccccCCCCCHHHHHHHHHHccCCCHHHHHHHHHHcCCCHH
Confidence 111110 0001223346678889999985
No 358
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.23 E-value=0.016 Score=56.21 Aligned_cols=86 Identities=22% Similarity=0.157 Sum_probs=52.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhC-CCCceEEEeeccccccCCCChHHHHHHHHHHHhCC--------CCCC-----
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISG-DFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKD--------KNVM----- 117 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~----- 117 (385)
-+.++|.|.+|+|||+|+..+++.... +-+.+++.. +++. ...+.++...+...-... .++.
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~l-iGER---~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAG-VGER---SREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEc-CCcc---hHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 467999999999999999999986653 345555553 3332 145666666665432111 1111
Q ss_pred ---chHHHHHHHh---CCceEEEEEeCCCC
Q 044214 118 ---PYIDLNFRRL---GHMKVLIVFDDVTC 141 (385)
Q Consensus 118 ---~~~~~l~~~l---~~k~~LlVlDdv~~ 141 (385)
...-.+.+++ .++++|+++||+..
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 2223344444 37899999999943
No 359
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.22 E-value=0.018 Score=51.44 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
-.+++|+|..|+|||||++.++..+
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998754
No 360
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.22 E-value=0.0055 Score=60.46 Aligned_cols=60 Identities=25% Similarity=0.320 Sum_probs=45.5
Q ss_pred CCCCCccccchhHHHHHHhhcC---CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 26 DNKNQLVGVESTVEEIESLLGV---ESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
...++++--.+-++++..||.. +....+++.++|++|+||||.++.+++.+ .|+..-|..
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~n 78 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWIN 78 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEecC
Confidence 3345566667788999999874 33446799999999999999999999875 355566654
No 361
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.22 E-value=0.011 Score=51.22 Aligned_cols=26 Identities=38% Similarity=0.682 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
.|+|+|-||+||||+|..++.++.++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~ 27 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSK 27 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhc
Confidence 58999999999999999977665443
No 362
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.21 E-value=0.0058 Score=53.92 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=28.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCce
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKISGDFDGS 83 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~ 83 (385)
+++..|.++||+|+||||+.+++...+..++...
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~pp 50 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPP 50 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCC
Confidence 4567889999999999999999999887776543
No 363
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.21 E-value=0.13 Score=48.78 Aligned_cols=41 Identities=34% Similarity=0.400 Sum_probs=31.4
Q ss_pred HHHHHhhcCC-------CCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 39 EEIESLLGVE-------SKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 39 ~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
++|.+.|... ...+.+|..+|.-|.||||-|.++++.++.+
T Consensus 80 eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~ 127 (451)
T COG0541 80 EELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKK 127 (451)
T ss_pred HHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHc
Confidence 4566666521 2347899999999999999999999987663
No 364
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.20 E-value=0.014 Score=52.42 Aligned_cols=90 Identities=16% Similarity=0.145 Sum_probs=50.4
Q ss_pred eEEEEEEcCCCchHHHHH-HHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCC--------CCCC-----
Q 044214 52 VYALGIWGIGGIGKTTIA-RAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKD--------KNVM----- 117 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA-~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~----- 117 (385)
-+.++|.|.+|+|||+|| ..+.++. +-+..+.+..+++. ...+.++..++...-... .++.
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGer---~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIGQK---ASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEecccc---hHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 457899999999999996 4455443 23444344334332 145566666665432111 1110
Q ss_pred -------chHHHHHHHhCCceEEEEEeCCCCh-hhhhHh
Q 044214 118 -------PYIDLNFRRLGHMKVLIVFDDVTCF-SQLESL 148 (385)
Q Consensus 118 -------~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~l 148 (385)
..++.++. +++.+|+++||+... ..+.++
T Consensus 144 ~a~~~a~aiAE~fr~--~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 144 LAPYTGCAMGEYFMD--NGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHH--CCCCEEEEEcChHHHHHHHHHH
Confidence 22233333 479999999999544 334443
No 365
>PLN02924 thymidylate kinase
Probab=96.18 E-value=0.025 Score=49.58 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=25.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
...|+|-|..|+||||+|..+++.+...
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~ 43 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGL 43 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999987655
No 366
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.18 E-value=0.013 Score=54.34 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=32.3
Q ss_pred HHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 38 VEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 38 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
...+.+.+....++..+|+|.|.+|+|||||+..+...++..
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 345555554334567899999999999999999998877654
No 367
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.18 E-value=0.018 Score=53.45 Aligned_cols=56 Identities=30% Similarity=0.283 Sum_probs=38.9
Q ss_pred CCCCccccchhHHH---HHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCc
Q 044214 27 NKNQLVGVESTVEE---IESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDG 82 (385)
Q Consensus 27 ~~~~~vGR~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 82 (385)
....+||..+..+. +.+++..+.=.-+.|.+.|++|.|||+||..+++.+....+.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 35789998866654 455666433234789999999999999999999999876653
No 368
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.17 E-value=0.0074 Score=56.48 Aligned_cols=49 Identities=29% Similarity=0.279 Sum_probs=39.4
Q ss_pred CCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC
Q 044214 29 NQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFD 81 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 81 (385)
..++|+++.+..+...+..+. .+.+.|.+|+|||+||+.++..+...|-
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~----~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG----HVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC----CEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 449999888888777666332 5889999999999999999998775544
No 369
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.16 E-value=0.0044 Score=52.31 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.|.|.|.+|+||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999973
No 370
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.16 E-value=0.042 Score=47.35 Aligned_cols=23 Identities=30% Similarity=0.198 Sum_probs=21.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
++++|+|+.|.|||||.+.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999999864
No 371
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.16 E-value=0.0033 Score=53.54 Aligned_cols=21 Identities=29% Similarity=0.075 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 044214 54 ALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~ 74 (385)
++.|+|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999884
No 372
>PRK13975 thymidylate kinase; Provisional
Probab=96.16 E-value=0.0052 Score=52.78 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=23.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
..|+|.|+.|+||||+|+.+++.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999998754
No 373
>PHA02244 ATPase-like protein
Probab=96.16 E-value=0.0076 Score=56.31 Aligned_cols=48 Identities=19% Similarity=0.267 Sum_probs=33.2
Q ss_pred CCCCccccchhHH----HHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 27 NKNQLVGVESTVE----EIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 27 ~~~~~vGR~~~l~----~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
....++|...... .+..++..+ .-|.|+|++|+|||+||+++++....
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3455777665554 444444422 24778999999999999999987543
No 374
>PRK13946 shikimate kinase; Provisional
Probab=96.15 E-value=0.0044 Score=52.73 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+.|.++|++|+||||+++.+++++.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999999873
No 375
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.025 Score=56.49 Aligned_cols=92 Identities=22% Similarity=0.326 Sum_probs=54.9
Q ss_pred CccccchhHHHHHHhhcCCC-----------CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCC
Q 044214 30 QLVGVESTVEEIESLLGVES-----------KGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGG 98 (385)
Q Consensus 30 ~~vGR~~~l~~l~~~L~~~~-----------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~ 98 (385)
++=|..+..+.+++.+..+. ....-|.++|++|+|||-||-+++.... .-|++ +...
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-----~~fis-vKGP------ 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-----LRFIS-VKGP------ 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-----eeEEE-ecCH------
Confidence 34555566666666654322 1234588999999999999999987532 23444 2221
Q ss_pred hHHHHHHHHHHHhCCCCCCchHHHHHHHh-CCceEEEEEeCCCC
Q 044214 99 LSCLRQKLLSNLLKDKNVMPYIDLNFRRL-GHMKVLIVFDDVTC 141 (385)
Q Consensus 99 ~~~l~~~ll~~l~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~ 141 (385)
+++....+... +....+..+. ..++|+|++|.+++
T Consensus 736 ------ElL~KyIGaSE--q~vR~lF~rA~~a~PCiLFFDEfdS 771 (952)
T KOG0735|consen 736 ------ELLSKYIGASE--QNVRDLFERAQSAKPCILFFDEFDS 771 (952)
T ss_pred ------HHHHHHhcccH--HHHHHHHHHhhccCCeEEEeccccc
Confidence 23333222221 4444444443 45999999999964
No 376
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.14 E-value=0.015 Score=52.71 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
+-+.++|+.|+|||++++.+.+..
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCS
T ss_pred CcEEEECCCCCchhHHHHhhhccC
Confidence 467899999999999999988754
No 377
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.13 E-value=0.023 Score=52.17 Aligned_cols=56 Identities=27% Similarity=0.267 Sum_probs=42.6
Q ss_pred CCCCCccccchhHHH---HHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCC
Q 044214 26 DNKNQLVGVESTVEE---IESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFD 81 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 81 (385)
...+.|||-.+..+. +.++..++.-.-+.|.++|++|.|||+||..+++.+...-+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 445679997765553 56677654444678999999999999999999998876533
No 378
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.12 E-value=0.0059 Score=49.89 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.++++|+|.+|+||||+.+.+.+.+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999999888765
No 379
>PRK14530 adenylate kinase; Provisional
Probab=96.11 E-value=0.005 Score=53.85 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.|.|+|++|+||||+|+.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 380
>PTZ00494 tuzin-like protein; Provisional
Probab=96.10 E-value=0.04 Score=52.44 Aligned_cols=81 Identities=14% Similarity=0.022 Sum_probs=58.7
Q ss_pred CCCCCCccccchhHHHHHHhhcC-CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHH
Q 044214 25 RDNKNQLVGVESTVEEIESLLGV-ESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLR 103 (385)
Q Consensus 25 ~~~~~~~vGR~~~l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~ 103 (385)
+..+..+|.|+.+-..+...|.+ +...++++++.|.-|+||++|.+....+- --..+++. ++ ..++-+
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE---~~paV~VD-VR-------g~EDtL 435 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE---GVALVHVD-VG-------GTEDTL 435 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc---CCCeEEEE-ec-------CCcchH
Confidence 44567899999999999998886 34568899999999999999999887642 23456665 33 233445
Q ss_pred HHHHHHHhCCCCC
Q 044214 104 QKLLSNLLKDKNV 116 (385)
Q Consensus 104 ~~ll~~l~~~~~~ 116 (385)
+.+.+.++.+.-+
T Consensus 436 rsVVKALgV~nve 448 (664)
T PTZ00494 436 RSVVRALGVSNVE 448 (664)
T ss_pred HHHHHHhCCCChh
Confidence 6666666665543
No 381
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.10 E-value=0.0053 Score=51.36 Aligned_cols=45 Identities=24% Similarity=0.350 Sum_probs=32.5
Q ss_pred ccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 044214 31 LVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 31 ~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
+||.+..+.++.+.+..-......|.|+|..|+||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888887776642223356779999999999999999883
No 382
>PTZ00035 Rad51 protein; Provisional
Probab=96.10 E-value=0.052 Score=50.80 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=27.9
Q ss_pred HHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 39 EEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 39 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..|-++|..+=..-.++.|+|.+|+|||||+..++-..
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 34444555333456789999999999999999987543
No 383
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.10 E-value=0.015 Score=53.57 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=30.9
Q ss_pred HHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 39 EEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 39 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
..+.+.+....+...+|+|+|.+|+|||||+..+.......
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444454444567899999999999999999999866443
No 384
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.10 E-value=0.012 Score=54.13 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=36.7
Q ss_pred CCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 27 NKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 27 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
..+.++=..+....+...+..+ +.|.|.|.+|+||||+|+.++..+.-.|
T Consensus 43 ~d~~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 43 IDPAYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCCCccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 3344555555666677777632 3599999999999999999999876444
No 385
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.10 E-value=0.0096 Score=57.03 Aligned_cols=85 Identities=14% Similarity=0.192 Sum_probs=48.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCC--------CCCC------
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKD--------KNVM------ 117 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~------ 117 (385)
-..++|.|..|+|||||++.++..... +.+++.. +++.. ..+.++...++..-... .++.
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi~l-IGER~---rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVVGL-VGERG---REVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCCC--CEEEEEE-EcCCh---HHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 357999999999999999888864322 3444432 33321 34455555543331111 0110
Q ss_pred --chHHHHHHHh--CCceEEEEEeCCCCh
Q 044214 118 --PYIDLNFRRL--GHMKVLIVFDDVTCF 142 (385)
Q Consensus 118 --~~~~~l~~~l--~~k~~LlVlDdv~~~ 142 (385)
...-.+.+++ +++++|+++||+...
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 1112233333 579999999999543
No 386
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.09 E-value=0.0053 Score=50.89 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=23.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
-|.++|+.|+||||+.+.+++.+.-.|
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 578999999999999999999876555
No 387
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.09 E-value=0.015 Score=51.28 Aligned_cols=47 Identities=21% Similarity=0.172 Sum_probs=33.3
Q ss_pred HHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 41 IESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 41 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
|-+.|..+=..-..+.|.|.+|+|||+||.+++......-..++|++
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 33444322234568999999999999999998765434456677886
No 388
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.08 E-value=0.041 Score=48.01 Aligned_cols=24 Identities=38% Similarity=0.350 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
-.+++|.|..|.|||||++.++..
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 348999999999999999999864
No 389
>PRK14529 adenylate kinase; Provisional
Probab=96.07 E-value=0.032 Score=48.82 Aligned_cols=91 Identities=16% Similarity=0.065 Sum_probs=47.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhCCC-CceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCc-eE
Q 044214 55 LGIWGIGGIGKTTIARAIFDKISGDF-DGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHM-KV 132 (385)
Q Consensus 55 v~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k-~~ 132 (385)
|.|.|++|+||||+|+.++.++.-.+ +..-.+.. +.... ..+....+.++.. +...++......+.+.+... .-
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~--~i~~~-t~lg~~i~~~i~~-G~lvpdei~~~lv~~~l~~~~~~ 78 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFRE--HIGGG-TELGKKAKEYIDR-GDLVPDDITIPMILETLKQDGKN 78 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhh--hccCC-ChHHHHHHHHHhc-cCcchHHHHHHHHHHHHhccCCC
Confidence 78899999999999999998764221 11111110 01111 2233333333322 11112224445556665431 34
Q ss_pred EEEEeCC-CChhhhhHhh
Q 044214 133 LIVFDDV-TCFSQLESLM 149 (385)
Q Consensus 133 LlVlDdv-~~~~~~~~l~ 149 (385)
-+|||+. .+..+.+.|.
T Consensus 79 g~iLDGfPRt~~Qa~~l~ 96 (223)
T PRK14529 79 GWLLDGFPRNKVQAEKLW 96 (223)
T ss_pred cEEEeCCCCCHHHHHHHH
Confidence 5899999 4555555443
No 390
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.07 E-value=0.069 Score=52.14 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..+++++|+.|+||||.+.+++..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 47999999999999999999998653
No 391
>PRK13768 GTPase; Provisional
Probab=96.07 E-value=0.0098 Score=53.36 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=27.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.++.|.|.||+||||++..+...+...-..++.+.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~ 37 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVN 37 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEE
Confidence 57899999999999999999987655444444443
No 392
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.07 E-value=0.014 Score=50.42 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
-.+++|+|..|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998875
No 393
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.07 E-value=0.013 Score=59.16 Aligned_cols=57 Identities=21% Similarity=0.336 Sum_probs=44.1
Q ss_pred CCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEEe
Q 044214 27 NKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGD-FDGSCFLE 87 (385)
Q Consensus 27 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~~ 87 (385)
..++++|.++.++.+...+... +.+.++|++|+|||++|+.+++.+... |...+++.
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~ 73 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYP 73 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEe
Confidence 3467899999998888888743 256699999999999999999987554 44455555
No 394
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.06 E-value=0.0017 Score=34.22 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=16.1
Q ss_pred CeeEEEcCCCCCCCCC-CCC
Q 044214 365 KISYLQDPGFAGVKLN-NFG 383 (385)
Q Consensus 365 ~LryL~l~~~~~~~lP-~~~ 383 (385)
+|+||++++|+++.+| +|+
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 5899999999999888 665
No 395
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.06 E-value=0.0072 Score=52.94 Aligned_cols=24 Identities=29% Similarity=0.210 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
..+++.|.|..|.||||+.+.+..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999999886
No 396
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.05 E-value=0.0042 Score=51.65 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=19.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 044214 55 LGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 55 v~I~G~gGiGKTtLA~~~~~~~ 76 (385)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 397
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.05 E-value=0.0088 Score=54.13 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=28.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
++|+|+|.+|+|||||+.++...++++. .+.-+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5899999999999999999999988776 455444
No 398
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.05 E-value=0.017 Score=49.83 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=50.9
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCC-------chHH
Q 044214 49 SKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVM-------PYID 121 (385)
Q Consensus 49 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-------~~~~ 121 (385)
.+.+.++.+.|.+|+||||++..+..... ....+.+. ....-...+....+.. . ....... ....
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~-~D~~r~~~p~~~~~~~----~-~~~~~~~~~~~~a~~~~~ 83 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVID-ADEFRQFHPDYDELLK----A-DPDEASELTQKEASRLAE 83 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE--GGGGGGGSTTHHHHHH----H-HCCCTHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEe-hHHHHHhccchhhhhh----h-hhhhhHHHHHHHHHHHHH
Confidence 35678999999999999999999988654 34455554 3332111122332222 1 1111100 3445
Q ss_pred HHHHHhCCceEEEEEeCCC-ChhhhhHhhccCCCCCCCcEE
Q 044214 122 LNFRRLGHMKVLIVFDDVT-CFSQLESLMGSLDWLTPVSRI 161 (385)
Q Consensus 122 ~l~~~l~~k~~LlVlDdv~-~~~~~~~l~~~~~~~~~gs~i 161 (385)
.+.+..-.+++=+|+|..- +.+....+...+.. .|.+|
T Consensus 84 ~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~--~GY~v 122 (199)
T PF06414_consen 84 KLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKA--AGYKV 122 (199)
T ss_dssp HHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHC--TT-EE
T ss_pred HHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHc--CCceE
Confidence 5555555667778889874 44445545555443 35444
No 399
>PRK05973 replicative DNA helicase; Provisional
Probab=96.04 E-value=0.013 Score=51.67 Aligned_cols=36 Identities=14% Similarity=0.008 Sum_probs=28.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
-.++.|.|.+|+|||++|.+++.....+-..+++++
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 458999999999999999999876544445566665
No 400
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=96.03 E-value=0.014 Score=51.59 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=28.8
Q ss_pred EEEEEEcC-CCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 53 YALGIWGI-GGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 53 ~vv~I~G~-gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
++|+|+|+ ||+||||++..++.-+...-..++-+.
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID 37 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAID 37 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 58899998 899999999999987766656666665
No 401
>PLN02674 adenylate kinase
Probab=96.03 E-value=0.028 Score=49.84 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
...|.|.|++|+||||+|+.++++.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3568899999999999999998854
No 402
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.03 E-value=0.0095 Score=53.81 Aligned_cols=36 Identities=28% Similarity=0.348 Sum_probs=26.0
Q ss_pred HHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 38 VEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 38 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
++++..++..+ ..|.|.|.+|+|||+||+.+++...
T Consensus 11 ~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 11 TSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred HHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 34445555422 2567999999999999999998553
No 403
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.01 E-value=0.005 Score=52.09 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
++++|+|+.|+||||||+.+++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999999853
No 404
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.01 E-value=0.0059 Score=51.36 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..|.|+|+.|+||||+|+.+++..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 468999999999999999999875
No 405
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.017 Score=53.67 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=50.5
Q ss_pred cHhHHHHHHHHHHHHhhccCCCCCCCCCCccccchhHHHHHHhhcC----------CCCCeEEEEEEcCCCchHHHHHHH
Q 044214 2 RESELINEVVNHILKRLDEVFRPRDNKNQLVGVESTVEEIESLLGV----------ESKGVYALGIWGIGGIGKTTIARA 71 (385)
Q Consensus 2 ~e~~~i~~i~~~v~~~l~~~~~~~~~~~~~vGR~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~ 71 (385)
+++.+++.+-.+|.++-++ ..=+++.|-++..+-|.+.... -...-+-|.++|++|.|||-||++
T Consensus 190 ~d~~Lve~lerdIl~~np~-----ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKA 264 (491)
T KOG0738|consen 190 YDADLVEALERDILQRNPN-----IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKA 264 (491)
T ss_pred chHHHHHHHHHHHhccCCC-----cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHH
Confidence 4555666666666555333 3447788888888877775431 113356789999999999999999
Q ss_pred HHHHhhC
Q 044214 72 IFDKISG 78 (385)
Q Consensus 72 ~~~~~~~ 78 (385)
|+.....
T Consensus 265 vATEc~t 271 (491)
T KOG0738|consen 265 VATECGT 271 (491)
T ss_pred HHHhhcC
Confidence 9987653
No 406
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.00 E-value=0.016 Score=50.86 Aligned_cols=36 Identities=33% Similarity=0.319 Sum_probs=24.8
Q ss_pred hHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 37 TVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 37 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..+.+...+... .+..|+|++|.|||+++..+...+
T Consensus 6 Q~~Ai~~~~~~~----~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSSN----GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTSS----E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC----CCEEEECCCCCChHHHHHHHHHHh
Confidence 445565555522 178999999999998888887766
No 407
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.00 E-value=0.012 Score=48.62 Aligned_cols=37 Identities=27% Similarity=0.269 Sum_probs=30.0
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFL 86 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 86 (385)
++..+|=++|++|.||||+|.++.+.+......+...
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 4567899999999999999999999887765544444
No 408
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.98 E-value=0.083 Score=49.18 Aligned_cols=25 Identities=36% Similarity=0.327 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
...+.++|+.|+|||++|..+++.+
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 5578899999999999999999865
No 409
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.97 E-value=0.015 Score=45.55 Aligned_cols=47 Identities=26% Similarity=0.414 Sum_probs=33.9
Q ss_pred Cccccchh----HHHHHHhhcC-CCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 30 QLVGVEST----VEEIESLLGV-ESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 30 ~~vGR~~~----l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.++|-.-. ++.|...+.. .++++-|++.+|.+|+|||.+++.+++.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 46665544 4445555543 34567789999999999999999998863
No 410
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.96 E-value=0.062 Score=50.29 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=32.8
Q ss_pred HHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC------CCCceEEEe
Q 044214 39 EEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG------DFDGSCFLE 87 (385)
Q Consensus 39 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~w~~ 87 (385)
..|-++|..+=..-.++-|+|.+|+|||+||..++-...- .-..++|++
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId 164 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 164 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE
Confidence 3444445433345678999999999999999988853221 112577887
No 411
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.96 E-value=0.012 Score=51.07 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=26.5
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 49 SKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 49 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
+.++++|+++|..|+|||||..++.+....
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 457999999999999999999999987543
No 412
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.96 E-value=0.01 Score=44.11 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=22.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
++.+.|.+|+||||++..++..+++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999998765
No 413
>PRK14527 adenylate kinase; Provisional
Probab=95.95 E-value=0.007 Score=51.82 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
...+|.|.|++|+||||+|+.++++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 414
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.95 E-value=0.011 Score=56.88 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=37.2
Q ss_pred CCccccchhHHHHHHhhc-------CCC-------CCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 29 NQLVGVESTVEEIESLLG-------VES-------KGVYALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~-------~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
..++|.+...+.+...+. ... -.-..+.++|++|+|||++|+.++..+...|
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 358999988887755441 100 0125689999999999999999998764433
No 415
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.95 E-value=0.01 Score=48.87 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=29.8
Q ss_pred chhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 044214 35 ESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 35 ~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.+.+++|.++|.. ++++++|.+|||||||...+...
T Consensus 23 ~~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhh
Confidence 3567888888872 58999999999999999998863
No 416
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.95 E-value=0.031 Score=52.12 Aligned_cols=77 Identities=10% Similarity=0.211 Sum_probs=49.0
Q ss_pred cchhHHHHHHhhcCCC-CCeEEEEEEcCCCchHHHHHHHHHHHhhCC---CCceEEEeeccccccCCCChHHHHHHHHHH
Q 044214 34 VESTVEEIESLLGVES-KGVYALGIWGIGGIGKTTIARAIFDKISGD---FDGSCFLENVREESQIPGGLSCLRQKLLSN 109 (385)
Q Consensus 34 R~~~l~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~ 109 (385)
|+...+.|.+.+...+ +...+|+|.|.=|+|||++.+.+.+.+.+. -...+++..-...... .....++..+...
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~-~~~~~~~~~l~~~ 79 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGED-DLWASFLEELFDQ 79 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcc-hHHHHHHHHHHHH
Confidence 3445667777777543 678899999999999999999999988766 1223333322212112 3345555556555
Q ss_pred Hh
Q 044214 110 LL 111 (385)
Q Consensus 110 l~ 111 (385)
+.
T Consensus 80 l~ 81 (325)
T PF07693_consen 80 LE 81 (325)
T ss_pred HH
Confidence 54
No 417
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.95 E-value=0.0067 Score=47.27 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=19.3
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 044214 55 LGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 55 v~I~G~gGiGKTtLA~~~~~~ 75 (385)
|.|+|..|+|||||.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999973
No 418
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.94 E-value=0.12 Score=48.43 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
-.+.+.++|+.|+|||++|+.+++.+-
T Consensus 20 l~ha~Lf~Gp~G~GK~~lA~~~A~~Ll 46 (342)
T PRK06964 20 LPHALLLHGQAGIGKLDFAQHLAQGLL 46 (342)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHc
Confidence 456888999999999999999998653
No 419
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.94 E-value=0.022 Score=48.75 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
+|+|.|+.|+||||+++.+++.+...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~ 27 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEAR 27 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 68999999999999999999987543
No 420
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.93 E-value=0.027 Score=48.30 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
-.+++|.|..|.|||||.+.++...
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998754
No 421
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.93 E-value=0.0062 Score=51.89 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
+.++|.|+|++|+|||||++.+.++.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998764
No 422
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.90 E-value=0.051 Score=50.42 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=33.1
Q ss_pred HHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC--C----CCceEEEe
Q 044214 39 EEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG--D----FDGSCFLE 87 (385)
Q Consensus 39 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~----f~~~~w~~ 87 (385)
..|-.+|..+=..-.++.|+|.+|+|||+|+..++..+.- . -..++|++
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyId 137 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYID 137 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEE
Confidence 3444555543345679999999999999999998763211 1 12457876
No 423
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.90 E-value=0.011 Score=48.85 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=26.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEE
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISGD-FDGSCFL 86 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~ 86 (385)
+++|+|..|+|||||+.++...++.+ +...+.-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 57899999999999999999987655 4444333
No 424
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.90 E-value=0.0058 Score=52.84 Aligned_cols=22 Identities=36% Similarity=0.093 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
.+++|+|..|.|||||.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 425
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.88 E-value=0.0046 Score=52.71 Aligned_cols=88 Identities=22% Similarity=0.158 Sum_probs=51.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCC-----CCCCchHHHHHHHh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKD-----KNVMPYIDLNFRRL 127 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~-----~~~~~~~~~l~~~l 127 (385)
..++|+|..|+||||+++.+...+... ...+.+....+.... . .....-.... .......+.+...+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 97 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLP-H------PNWVRLVTRPGNVEGSGEVTMADLLRSAL 97 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCC-C------CCEEEEEEecCCCCCCCccCHHHHHHHHh
Confidence 479999999999999999998866433 223333211111000 0 0000000000 01125566677778
Q ss_pred CCceEEEEEeCCCChhhhhHh
Q 044214 128 GHMKVLIVFDDVTCFSQLESL 148 (385)
Q Consensus 128 ~~k~~LlVlDdv~~~~~~~~l 148 (385)
+..+=.++++.+.+.+.+..+
T Consensus 98 R~~pd~i~igEir~~ea~~~~ 118 (186)
T cd01130 98 RMRPDRIIVGEVRGGEALDLL 118 (186)
T ss_pred ccCCCEEEEEccCcHHHHHHH
Confidence 888888999999887766544
No 426
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.88 E-value=0.01 Score=53.95 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=22.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
+.|+|+|-|||||||+|..++.-+...
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~ 27 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEM 27 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 368999999999999999999866543
No 427
>PRK04182 cytidylate kinase; Provisional
Probab=95.88 E-value=0.0073 Score=50.94 Aligned_cols=23 Identities=43% Similarity=0.606 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
+|.|.|+.|+||||+|+.+++++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999875
No 428
>PLN02200 adenylate kinase family protein
Probab=95.88 E-value=0.0083 Score=53.10 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.+.+|.|.|++|+||||+|+.+++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998764
No 429
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.87 E-value=0.054 Score=46.78 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
-.+++|+|..|+|||||++.++....
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhcccCC
Confidence 35899999999999999999987543
No 430
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=95.87 E-value=0.03 Score=46.13 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=29.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH-hhCCCCceEEEe
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK-ISGDFDGSCFLE 87 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~-~~~~f~~~~w~~ 87 (385)
--++|+|-|||||+++.+.+|.- ..+.|...+|+.
T Consensus 21 iK~vivGng~VGKssmiqryCkgifTkdykktIgvd 56 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVD 56 (246)
T ss_pred EEEEEECCCccchHHHHHHHhccccccccccccchh
Confidence 34679999999999999999984 466788889987
No 431
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.87 E-value=0.0073 Score=50.66 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.|.|+|++|+||||+|+.+++++
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58889999999999999999876
No 432
>PF13245 AAA_19: Part of AAA domain
Probab=95.86 E-value=0.044 Score=39.12 Aligned_cols=22 Identities=32% Similarity=0.249 Sum_probs=16.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
+++.|.|.+|.|||+++.....
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4778899999999955555444
No 433
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.86 E-value=0.029 Score=55.57 Aligned_cols=116 Identities=16% Similarity=0.109 Sum_probs=0.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEee--ccccccCCCChHHHHHHHHHHHhCCCCCC--------------
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLEN--VREESQIPGGLSCLRQKLLSNLLKDKNVM-------------- 117 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~--~~~~~~~~~~~~~l~~~ll~~l~~~~~~~-------------- 117 (385)
.|+|+|+.|+|||||.+.+.......-..+.|-.. +....+. .+....-..++..+....++.
T Consensus 350 riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~-~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F 428 (530)
T COG0488 350 RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQH-RDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF 428 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEeh-hhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCC
Q ss_pred ----------------chHHHHHHHhCCceEEEEEeCC------CChhhhhHhhccCCCCCCCcEEEEEeccHHHHhhcc
Q 044214 118 ----------------PYIDLNFRRLGHMKVLIVFDDV------TCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNWR 175 (385)
Q Consensus 118 ----------------~~~~~l~~~l~~k~~LlVlDdv------~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~~~~ 175 (385)
...-.+...+-.++-+||||.- ++.+.++..+..++ |+ ||+.|.++.......
T Consensus 429 ~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~----Gt-vl~VSHDr~Fl~~va 503 (530)
T COG0488 429 TGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE----GT-VLLVSHDRYFLDRVA 503 (530)
T ss_pred ChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC----Ce-EEEEeCCHHHHHhhc
No 434
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.86 E-value=0.007 Score=48.45 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
+-|.|+|.+|+||||+|.+++..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHH
Confidence 35889999999999999999964
No 435
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.86 E-value=0.02 Score=55.14 Aligned_cols=86 Identities=17% Similarity=0.150 Sum_probs=52.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh-CCCCceEEEeeccccccCCCChHHHHHHHHHHHhCC--------CCCC-----
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS-GDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKD--------KNVM----- 117 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~----- 117 (385)
-+.++|.|.+|+|||+|+..+..... .+-+.++|.. +++. ...+.+++..+...-... .++.
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~-iGeR---~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~ 213 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCG-IGER---CREGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEE-eccC---cHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHH
Confidence 45799999999999999999987654 3335566654 3322 145566666655431111 1111
Q ss_pred ---chHHHHHHHh---CCceEEEEEeCCCC
Q 044214 118 ---PYIDLNFRRL---GHMKVLIVFDDVTC 141 (385)
Q Consensus 118 ---~~~~~l~~~l---~~k~~LlVlDdv~~ 141 (385)
...-.+.+++ +++++|+++||+-.
T Consensus 214 ~~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 214 RVGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 2222344444 46899999999954
No 436
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.86 E-value=0.052 Score=54.12 Aligned_cols=51 Identities=22% Similarity=0.119 Sum_probs=37.7
Q ss_pred CCCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 044214 25 RDNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 25 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
...-+.++|....++++.+.+..-...-..|.|+|..|+||+.+|+.+...
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 344467999999888887766531222335889999999999999997653
No 437
>PRK06761 hypothetical protein; Provisional
Probab=95.86 E-value=0.011 Score=53.54 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=24.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
++|.|.|++|+||||+++.+++.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 579999999999999999999987654
No 438
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.86 E-value=0.0073 Score=52.27 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..+|+|+|++|+||||||+.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999999864
No 439
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.85 E-value=0.015 Score=48.18 Aligned_cols=27 Identities=30% Similarity=0.510 Sum_probs=24.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
++++|+|..|+|||||+..+...+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999987655
No 440
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.85 E-value=0.029 Score=56.23 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
+-..++|+|..|+|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999998753
No 441
>PRK08149 ATP synthase SpaL; Validated
Probab=95.84 E-value=0.025 Score=54.23 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=47.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCC--------CCCC------
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKD--------KNVM------ 117 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~------ 117 (385)
-..++|.|.+|+|||||+..++..... +..++.. +.. ....+.++..+........ .++.
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~--dv~v~g~-Ig~---rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSEA--DVFVIGL-IGE---RGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCCC--CeEEEEE-Eee---CCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 357999999999999999988864322 2222221 211 1155666666665532211 1111
Q ss_pred --chHHHHHHHh--CCceEEEEEeCCCC
Q 044214 118 --PYIDLNFRRL--GHMKVLIVFDDVTC 141 (385)
Q Consensus 118 --~~~~~l~~~l--~~k~~LlVlDdv~~ 141 (385)
.....+.+++ +++++||++||+..
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 1112222332 58999999999953
No 442
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.84 E-value=0.094 Score=46.57 Aligned_cols=52 Identities=23% Similarity=0.163 Sum_probs=35.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEEeeccccccCCCChHHHHHHHHHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGD-FDGSCFLENVREESQIPGGLSCLRQKLLSN 109 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~ 109 (385)
.-.++.|.|.+|+|||+++.+++...... -..++|++ .. .....+...++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s-~E------~~~~~~~~r~~~~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS-LE------MSKEQLLQRLLAS 64 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe-CC------CCHHHHHHHHHHH
Confidence 34689999999999999999998765433 44566665 21 3445555555443
No 443
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.84 E-value=0.048 Score=60.60 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=23.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..++-|.++|++|+|||.||++++...
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc
Confidence 345679999999999999999999864
No 444
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.84 E-value=0.028 Score=48.17 Aligned_cols=26 Identities=35% Similarity=0.357 Sum_probs=23.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
..|+|.|..|+||||+++.+++.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999998765
No 445
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.83 E-value=0.0089 Score=52.06 Aligned_cols=22 Identities=45% Similarity=0.638 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
..++|+|.+|+|||||++.++.
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 4899999999999999999985
No 446
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.83 E-value=0.055 Score=49.92 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
-.+++|.|+.|.|||||.+.++..
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999864
No 447
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.82 E-value=0.0096 Score=55.45 Aligned_cols=50 Identities=22% Similarity=0.220 Sum_probs=37.9
Q ss_pred CCCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 25 RDNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 25 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
|.+-..++|.+..++.+.-.+.. .+..-+.+.|.+|+||||+|+.+..-+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~--~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID--PGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc--cCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 33456789999998887754431 223458999999999999999998854
No 448
>PLN02348 phosphoribulokinase
Probab=95.81 E-value=0.011 Score=55.76 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=26.8
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 49 SKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 49 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
.+++.+|+|.|.+|+||||+|+.+.+.+...
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~ 76 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGGA 76 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 4567899999999999999999999987543
No 449
>PRK04328 hypothetical protein; Provisional
Probab=95.80 E-value=0.021 Score=51.18 Aligned_cols=47 Identities=11% Similarity=0.047 Sum_probs=33.9
Q ss_pred HHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 41 IESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 41 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
|-++|..+=..-.++.|.|.+|+|||+||.+++......-..++|++
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 33444432234568999999999999999998876444456677876
No 450
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.80 E-value=0.02 Score=55.15 Aligned_cols=82 Identities=20% Similarity=0.157 Sum_probs=45.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhC-------CCCCC-------
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLK-------DKNVM------- 117 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~-------~~~~~------- 117 (385)
-..++|+|..|+|||||++.++.... ...++++....+. ..+..+....+..... +.++.
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~-pd~gvv~liGerg-----rev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~ 238 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA-FDTVVIALVGERG-----REVREFLEDTLADNLKKAVAVVATSDESPMMRRLA 238 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCeeeeeecccCC-----ccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHH
Confidence 35799999999999999987775432 2223334321111 3444444433333211 11111
Q ss_pred -----chHHHHHHHhCCceEEEEEeCCCC
Q 044214 118 -----PYIDLNFRRLGHMKVLIVFDDVTC 141 (385)
Q Consensus 118 -----~~~~~l~~~l~~k~~LlVlDdv~~ 141 (385)
..++.++. +++.+|+++||+..
T Consensus 239 ~~~a~~iAEyfrd--~G~~Vll~~DslTr 265 (450)
T PRK06002 239 PLTATAIAEYFRD--RGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHH--cCCCEEEeccchHH
Confidence 22233332 47999999999954
No 451
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.80 E-value=0.015 Score=61.31 Aligned_cols=114 Identities=20% Similarity=0.198 Sum_probs=63.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC-C---CceEEEeeccccccCCCChH-HHHHHHHHHHhCCCCCCchHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGD-F---DGSCFLENVREESQIPGGLS-CLRQKLLSNLLKDKNVMPYIDLNFRR 126 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f---~~~~w~~~~~~~~~~~~~~~-~l~~~ll~~l~~~~~~~~~~~~l~~~ 126 (385)
..-+.|+|.+|.||||+...++-....+ + +..+++.............. .+..-+...+.......+......++
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~e~ 301 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAKQLIEAHQEL 301 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcchhhHHHHHH
Confidence 3478999999999999999998754222 1 33334331100000001111 22222222222222222344444688
Q ss_pred hCCceEEEEEeCCCChhh---------hhHhhccCCCCCCCcEEEEEeccHH
Q 044214 127 LGHMKVLIVFDDVTCFSQ---------LESLMGSLDWLTPVSRIILTTRNKQ 169 (385)
Q Consensus 127 l~~k~~LlVlDdv~~~~~---------~~~l~~~~~~~~~gs~ilvTtR~~~ 169 (385)
++..++++++|.++.... +..+.+.. +.+++|+|+|...
T Consensus 302 l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~----~~~~~iltcR~~~ 349 (824)
T COG5635 302 LKTGKLLLLLDGLDELEPKNQRALIREINKFLQEY----PDAQVLLTCRPDT 349 (824)
T ss_pred HhccchhhHhhccchhhhhhHHHHHHHHHHHhhhc----cCCeEEEEeccch
Confidence 999999999999975322 33333333 4789999998653
No 452
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.79 E-value=0.013 Score=53.40 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=26.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFL 86 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 86 (385)
++|+|+|-|||||||+|..++..+...-..+.-+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVV 35 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 5788999999999999999998765543334444
No 453
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.78 E-value=0.026 Score=57.88 Aligned_cols=48 Identities=17% Similarity=0.292 Sum_probs=37.5
Q ss_pred CCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 044214 28 KNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
-+.++|.+..+.++.+.+..-......|.|+|..|+||+++|+.+.+.
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 466999999888887776542223335889999999999999999875
No 454
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.77 E-value=0.0087 Score=49.77 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=17.9
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 044214 55 LGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 55 v~I~G~gGiGKTtLA~~~~~~ 75 (385)
|+|+|..|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 455
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.77 E-value=0.0088 Score=50.00 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
+|+|.|..|+||||+|+.+.+++
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999864
No 456
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.77 E-value=0.0077 Score=51.33 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.++|+|+.|+|||||++.++...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 78999999999999999998754
No 457
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=95.76 E-value=0.018 Score=50.31 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..+.+|.|-|.+||||||+|.++++++
T Consensus 87 ~~p~IILIGGasGVGkStIA~ElA~rL 113 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGELARRL 113 (299)
T ss_pred CCCeEEEecCCCCCChhHHHHHHHHHc
Confidence 346799999999999999999999975
No 458
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.76 E-value=0.0049 Score=30.15 Aligned_cols=17 Identities=12% Similarity=-0.091 Sum_probs=10.9
Q ss_pred CCeeEEEcCCCCCCCCC
Q 044214 364 CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 364 ~~LryL~l~~~~~~~lP 380 (385)
.+||.|++++|+++.||
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 36889999999988887
No 459
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.76 E-value=0.014 Score=50.92 Aligned_cols=27 Identities=30% Similarity=0.569 Sum_probs=22.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
++|+|.|-||+||||++..++.-+...
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~ 27 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEM 27 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHC
Confidence 468999999999999999998866543
No 460
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.016 Score=58.11 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
.+|+++|++|.||||+|.-+.+
T Consensus 495 e~vALVGPSGsGKSTiasLL~r 516 (716)
T KOG0058|consen 495 EVVALVGPSGSGKSTIASLLLR 516 (716)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999987755
No 461
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.16 Score=44.02 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=43.3
Q ss_pred HHHHHHhCCceEEEEEeCCCChhhhhHhh------ccCCCCCCCcEEEEEeccHHHHhhccc---eecccC-CCCCCchH
Q 044214 121 DLNFRRLGHMKVLIVFDDVTCFSQLESLM------GSLDWLTPVSRIILTTRNKQVLRNWRV---NAFKRN-HPDVGNEK 190 (385)
Q Consensus 121 ~~l~~~l~~k~~LlVlDdv~~~~~~~~l~------~~~~~~~~gs~ilvTtR~~~~~~~~~~---~~~~~~-~~~~~~~~ 190 (385)
.++.+.+-=++-+.|||..++--+.+.+. ..+. .+|+-+++.|....++..... +.+... -..+...+
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~e 230 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPE 230 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCHH
Confidence 34444555567899999998644433322 2232 346667777777777766543 333222 22234457
Q ss_pred HHHHHHHHhC
Q 044214 191 LSSNVMKYAQ 200 (385)
Q Consensus 191 ~~~~i~~~~~ 200 (385)
+++++-+.|-
T Consensus 231 l~~~le~~gy 240 (251)
T COG0396 231 LAEELEEKGY 240 (251)
T ss_pred HHHHHHHhch
Confidence 7777766543
No 462
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.092 Score=44.08 Aligned_cols=34 Identities=32% Similarity=0.349 Sum_probs=25.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFL 86 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 86 (385)
..+.|.|..|+|||||.+.++--.+..--.+.|-
T Consensus 29 e~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~ 62 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHcccCCCCCeEEec
Confidence 3788999999999999999987554443334443
No 463
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.73 E-value=0.014 Score=48.06 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=29.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.++++|+|..|+|||||..++..+++.+--.+.-+-
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iK 37 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVK 37 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEE
Confidence 468999999999999999999998877754444443
No 464
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.73 E-value=0.019 Score=44.82 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=25.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 55 LGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 55 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
|.+.|.||+||||++..+++.+...-..+..+.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id 34 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 789999999999999999987765544444444
No 465
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.72 E-value=0.016 Score=51.25 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=27.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.-.++.|.|.+|+||||||.+++......-..+++++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3458999999999999999888775533334556665
No 466
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.72 E-value=0.049 Score=56.06 Aligned_cols=93 Identities=16% Similarity=0.168 Sum_probs=55.8
Q ss_pred HHHHHHhhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCC
Q 044214 38 VEEIESLLG-VESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNV 116 (385)
Q Consensus 38 l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~ 116 (385)
...|-.+|. .+=..-+++-|+|.+|+||||||.+++......-..++|+. ..+. .+ ...+..++-...+
T Consensus 45 i~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId-~E~t----~~-----~~~A~~lGvDl~~ 114 (790)
T PRK09519 45 SIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFID-AEHA----LD-----PDYAKKLGVDTDS 114 (790)
T ss_pred cHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC-Cccc----hh-----HHHHHHcCCChhH
Confidence 345555565 33345678999999999999999998776555556678886 2221 22 1233444332221
Q ss_pred C---------chHHHHHHHhC-CceEEEEEeCCC
Q 044214 117 M---------PYIDLNFRRLG-HMKVLIVFDDVT 140 (385)
Q Consensus 117 ~---------~~~~~l~~~l~-~k~~LlVlDdv~ 140 (385)
. +....+...++ ++.-|+|+|.+.
T Consensus 115 llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 115 LLVSQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred eEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 1 33333444443 467799999984
No 467
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.71 E-value=0.029 Score=51.13 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.+-+|.|.|.+|+||||+|..+++++
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999876
No 468
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.70 E-value=0.025 Score=55.67 Aligned_cols=113 Identities=16% Similarity=0.102 Sum_probs=64.3
Q ss_pred HHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhC-CCCC
Q 044214 38 VEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLK-DKNV 116 (385)
Q Consensus 38 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~-~~~~ 116 (385)
++.+..++.. ...++.|+|+.|+||||+...+.+.+...-..++-+.+--+. .. ..+ .+... ....
T Consensus 231 ~~~l~~~~~~---~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~-~~-~~~--------~q~~v~~~~g 297 (486)
T TIGR02533 231 LSRFERLIRR---PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY-QI-EGI--------GQIQVNPKIG 297 (486)
T ss_pred HHHHHHHHhc---CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee-ec-CCC--------ceEEEccccC
Confidence 3444544442 234899999999999999998887664332223333211110 00 111 01000 1112
Q ss_pred CchHHHHHHHhCCceEEEEEeCCCChhhhhHhhccCCCCCCCcEEEEEec
Q 044214 117 MPYIDLNFRRLGHMKVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTR 166 (385)
Q Consensus 117 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR 166 (385)
......++..|+..+=.|++.++.+.+.......... .|..|+-|-.
T Consensus 298 ~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~~aa~---tGHlvlsTlH 344 (486)
T TIGR02533 298 LTFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQASL---TGHLVLSTLH 344 (486)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHHHH---hCCcEEEEEC
Confidence 2567788899999999999999988876655443322 3444444443
No 469
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.70 E-value=0.014 Score=57.82 Aligned_cols=29 Identities=24% Similarity=0.563 Sum_probs=25.3
Q ss_pred CCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 48 ESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 48 ~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..+++.+|+|.|.+|+||||||+.+...+
T Consensus 61 ~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 61 KNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred cCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 34567899999999999999999998764
No 470
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.69 E-value=0.041 Score=52.95 Aligned_cols=84 Identities=18% Similarity=0.101 Sum_probs=47.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhC--------CCCCC------
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLK--------DKNVM------ 117 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~--------~~~~~------ 117 (385)
-+.++|.|..|+|||||++.+++.... +.+++.. +++.. ..+.++....+..-+. ..++.
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~~--d~~v~~~-iGER~---rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNADA--DVSVIGL-IGERG---REVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCC--CEEEEEE-EecCc---HHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 468899999999999999988875432 3344332 32221 3344555444332110 01110
Q ss_pred --chHHHHHHHh--CCceEEEEEeCCCC
Q 044214 118 --PYIDLNFRRL--GHMKVLIVFDDVTC 141 (385)
Q Consensus 118 --~~~~~l~~~l--~~k~~LlVlDdv~~ 141 (385)
...-.+.+++ +++++|+++||+..
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 1111223333 57999999999943
No 471
>PRK14532 adenylate kinase; Provisional
Probab=95.69 E-value=0.0088 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 044214 55 LGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 55 v~I~G~gGiGKTtLA~~~~~~~ 76 (385)
|.|.|++|+||||+|+.++++.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7789999999999999999754
No 472
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.69 E-value=0.013 Score=52.02 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=22.8
Q ss_pred EEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccc
Q 044214 57 IWGIGGIGKTTIARAIFDKISGDFDGSCFLENVRE 91 (385)
Q Consensus 57 I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~ 91 (385)
|+|++|+||||+++.+.+.+...-..++.+ |...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~v-NLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIV-NLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEE-E--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEE-Ecch
Confidence 689999999999999999776654444444 3443
No 473
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.68 E-value=0.012 Score=54.58 Aligned_cols=109 Identities=19% Similarity=0.078 Sum_probs=60.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCce
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHMK 131 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~ 131 (385)
...+.|+|..|+|||||++.+...+.... .++.+....+......+...+. ...-..........+.+...|+..+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~Lr~~p 219 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHLF---YSKGGQGLAKVTPKDLLQSCLRMRP 219 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEEE---ecCCCCCcCccCHHHHHHHHhcCCC
Confidence 35899999999999999999987654332 2333332222111000000000 0000001112356677777888888
Q ss_pred EEEEEeCCCChhhhhHhhccCCCCCCCcE-EEEEeccH
Q 044214 132 VLIVFDDVTCFSQLESLMGSLDWLTPVSR-IILTTRNK 168 (385)
Q Consensus 132 ~LlVlDdv~~~~~~~~l~~~~~~~~~gs~-ilvTtR~~ 168 (385)
=.+++|.+...+.+.. +.... .|.. ++.|+...
T Consensus 220 d~ii~gE~r~~e~~~~-l~a~~---~g~~~~i~T~Ha~ 253 (308)
T TIGR02788 220 DRIILGELRGDEAFDF-IRAVN---TGHPGSITTLHAG 253 (308)
T ss_pred CeEEEeccCCHHHHHH-HHHHh---cCCCeEEEEEeCC
Confidence 8999999988766553 43333 2332 46666544
No 474
>PRK10436 hypothetical protein; Provisional
Probab=95.68 E-value=0.028 Score=54.81 Aligned_cols=102 Identities=14% Similarity=0.080 Sum_probs=59.4
Q ss_pred hHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhC-CCC
Q 044214 37 TVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLK-DKN 115 (385)
Q Consensus 37 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~-~~~ 115 (385)
.++.+.+++.. ...+|.|+|+.|+||||....+.+.+...-..++-+.+--+ +.+.. ..+..- ...
T Consensus 206 ~~~~l~~~~~~---~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE-----~~l~g-----i~Q~~v~~~~ 272 (462)
T PRK10436 206 QLAQFRQALQQ---PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVE-----IPLAG-----INQTQIHPKA 272 (462)
T ss_pred HHHHHHHHHHh---cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcc-----ccCCC-----cceEeeCCcc
Confidence 34445555542 23489999999999999887777765433222222211100 11100 001100 111
Q ss_pred CCchHHHHHHHhCCceEEEEEeCCCChhhhhHhhcc
Q 044214 116 VMPYIDLNFRRLGHMKVLIVFDDVTCFSQLESLMGS 151 (385)
Q Consensus 116 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~ 151 (385)
.......++..|+..+=.|++.++.+.+........
T Consensus 273 g~~f~~~lr~~LR~dPDvI~vGEIRD~eta~~al~A 308 (462)
T PRK10436 273 GLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKA 308 (462)
T ss_pred CcCHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHH
Confidence 236778889999999999999999888876654433
No 475
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.67 E-value=0.014 Score=48.71 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
-.+++|.|++|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3588999999999999999999865
No 476
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.66 E-value=0.082 Score=53.46 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=22.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
++..|.|.+|.||||+++.+...+..
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~ 193 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQ 193 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 58899999999999999999876533
No 477
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.66 E-value=0.05 Score=50.43 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=33.5
Q ss_pred HHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC------CCceEEEe
Q 044214 40 EIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGD------FDGSCFLE 87 (385)
Q Consensus 40 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~w~~ 87 (385)
.+..+|..+=..-.++-|+|.+|+|||+|+.+++...... -..++|++
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 3444454333446789999999999999999998764321 12677887
No 478
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.66 E-value=0.0093 Score=51.02 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 044214 55 LGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 55 v~I~G~gGiGKTtLA~~~~~~~ 76 (385)
|.|.|++|+||||+|+.++++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999864
No 479
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.65 E-value=0.015 Score=51.84 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=26.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
+|+|.|.+|+||||+|+++.+.++..-..+..++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~ 34 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVE 34 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 5899999999999999999987765433344443
No 480
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.64 E-value=0.017 Score=55.23 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=37.6
Q ss_pred CCccccchhHHHHHHhhc-------C---CC--C----CeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 29 NQLVGVESTVEEIESLLG-------V---ES--K----GVYALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~-------~---~~--~----~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
...+|.++..+.+...+. . .. + ....+.++|++|+|||++|+.++..+...|
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf 144 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF 144 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe
Confidence 457999998888865541 1 01 1 125799999999999999999998764333
No 481
>PRK14531 adenylate kinase; Provisional
Probab=95.64 E-value=0.011 Score=50.17 Aligned_cols=23 Identities=30% Similarity=0.250 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.|.|+|++|+||||+++.+++..
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 482
>PRK12338 hypothetical protein; Provisional
Probab=95.63 E-value=0.011 Score=54.32 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
+.+|.|.|.+|+||||+|..++.++
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999864
No 483
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.63 E-value=0.016 Score=48.78 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=30.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFL 86 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 86 (385)
...|.|.|++|+|||+|..+.++.++++|...+-.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~ 47 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVIT 47 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEe
Confidence 47999999999999999999999998888755443
No 484
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.63 E-value=0.017 Score=47.24 Aligned_cols=26 Identities=31% Similarity=0.616 Sum_probs=22.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
++++.|.+|+||||++..+.......
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~ 26 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRAR 26 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 37899999999999999999876544
No 485
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.62 E-value=0.011 Score=45.01 Aligned_cols=22 Identities=36% Similarity=0.432 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIF 73 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~ 73 (385)
-..++|.|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3579999999999999999986
No 486
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.034 Score=50.17 Aligned_cols=30 Identities=33% Similarity=0.474 Sum_probs=26.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
.+..++|||++|.|||-+|+.++.++.-.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 367899999999999999999999876554
No 487
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.61 E-value=0.23 Score=46.87 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=23.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh--CCCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS--GDFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~w~~ 87 (385)
.++|+++|+.||||||-..+++.+.. ..=..+..++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 68999999999999954444444332 3334455665
No 488
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.02 Score=56.83 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=25.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
...+.+.++|++|.|||.||+++++.....|
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~f 304 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRF 304 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeE
Confidence 3456899999999999999999999655444
No 489
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.60 E-value=0.06 Score=49.67 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=35.7
Q ss_pred HHHHHHhhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 38 VEEIESLLG-VESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 38 l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
...|-..|. .+-+.-+++-|+|..|+||||||..+....+..-...+|+.
T Consensus 38 ~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID 88 (322)
T PF00154_consen 38 SPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID 88 (322)
T ss_dssp -HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec
Confidence 344555554 22233568999999999999999999987766666777886
No 490
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.60 E-value=0.038 Score=50.80 Aligned_cols=88 Identities=22% Similarity=0.204 Sum_probs=52.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCC-ceE-EEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCc
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFD-GSC-FLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHM 130 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~-w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k 130 (385)
..+.|+|..|+||||+++.+.+.+....+ ..+ -+.+..+......+... +..........+.++..|+..
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~--------~~~~~~~~~~~~~l~~aLR~~ 204 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQ--------LRTSDDAISMTRLLKATLRLR 204 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEE--------EEecCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999988755321 222 22221111000000000 000000115567788888888
Q ss_pred eEEEEEeCCCChhhhhHh
Q 044214 131 KVLIVFDDVTCFSQLESL 148 (385)
Q Consensus 131 ~~LlVlDdv~~~~~~~~l 148 (385)
+=.||+..+...+.+..+
T Consensus 205 pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 205 PDRIIVGEVRGGEALDLL 222 (299)
T ss_pred CCEEEEeccCCHHHHHHH
Confidence 889999999888776543
No 491
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.60 E-value=0.011 Score=54.59 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=21.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.+|.+.|.+|+||||+|+.+.++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999998865
No 492
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.59 E-value=0.047 Score=51.63 Aligned_cols=105 Identities=17% Similarity=0.106 Sum_probs=60.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCC-ceEE-EeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCc
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFD-GSCF-LENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHM 130 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~w-~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k 130 (385)
..+.|+|..|+||||++..+.+.+....+ ..+. +.+.-+... .....+....-.+++. ........++..|+..
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~--~~~~~~~~~~q~evg~--~~~~~~~~l~~aLR~~ 225 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYIL--GSPDDLLPPAQSQIGR--DVDSFANGIRLALRRA 225 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhcc--CCCceeecccccccCC--CccCHHHHHHHhhccC
Confidence 37889999999999999999887754432 2332 221111100 0000000000011111 1115567788899999
Q ss_pred eEEEEEeCCCChhhhhHhhccCCCCCCCcEEEEEe
Q 044214 131 KVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTT 165 (385)
Q Consensus 131 ~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTt 165 (385)
+=.|+++.+.+.+.++..+.... .|.. ++||
T Consensus 226 PD~I~vGEiRd~et~~~al~aa~---TGH~-v~tT 256 (372)
T TIGR02525 226 PKIIGVGEIRDLETFQAAVLAGQ---SGHF-CLGT 256 (372)
T ss_pred CCEEeeCCCCCHHHHHHHHHHHh---cCCc-EEEe
Confidence 99999999998888776544422 3544 4444
No 493
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.56 E-value=0.018 Score=52.18 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=26.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
++|+|.|-||+||||++..++..+...-..+.-+.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD 36 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVG 36 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 46888899999999999999987654433344443
No 494
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.56 E-value=0.056 Score=45.25 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
++.|.|.+|+|||++|..++.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 68999999999999999998764
No 495
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.56 E-value=0.1 Score=54.04 Aligned_cols=35 Identities=31% Similarity=0.130 Sum_probs=26.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCC-CceEEEe
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDF-DGSCFLE 87 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~w~~ 87 (385)
+++.|.|.+|.||||+++.+.+.+...- ...+++.
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ 374 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLA 374 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEE
Confidence 4889999999999999999988665432 1344544
No 496
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.55 E-value=0.22 Score=44.38 Aligned_cols=46 Identities=22% Similarity=0.323 Sum_probs=37.3
Q ss_pred CCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 29 NQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
+.+.++++.-..+.+... .++.+...++|++|.||-|.+..+.+++
T Consensus 13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~el 58 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLREL 58 (351)
T ss_pred hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHH
Confidence 447788887788887666 4567889999999999999998888865
No 497
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.55 E-value=0.011 Score=50.30 Aligned_cols=29 Identities=24% Similarity=0.502 Sum_probs=23.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCC
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFD 81 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 81 (385)
+.|.|+|++|+|||||+..+.+.....|.
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~ 31 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFE 31 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceE
Confidence 57999999999999999999886543443
No 498
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.55 E-value=0.056 Score=50.18 Aligned_cols=49 Identities=18% Similarity=0.149 Sum_probs=32.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKL 106 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~l 106 (385)
-+.++|.|..|+|||+|++++++.. +-+.++++- +++. ...+.+++.++
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~--~~dvvVyv~-iGER---g~Ev~e~l~ef 205 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS--NSDIVIYVG-CGER---GNEMTEVLEEF 205 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC--CCCEEEEEE-eCCC---hHHHHHHHHHH
Confidence 3579999999999999999998853 234555554 2221 14455555554
No 499
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.55 E-value=0.016 Score=53.70 Aligned_cols=52 Identities=19% Similarity=0.288 Sum_probs=43.2
Q ss_pred CCCccccchhHHHHHHhhcCC----CCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 28 KNQLVGVESTVEEIESLLGVE----SKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
...|+|.++.++++.+.+... ...-+++.+.|+.|.||||||..+-+-+.+.
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 347999999999999988742 2346899999999999999999998866544
No 500
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.54 E-value=0.023 Score=53.93 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=28.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFL 86 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 86 (385)
....+.|.|.||.|||+|.+++.+.++..-..++..
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~ 56 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVT 56 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEe
Confidence 445789999999999999999999887654444433
Done!