Query 044214
Match_columns 385
No_of_seqs 307 out of 2410
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 22:00:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.4E-42 4.6E-47 344.9 19.0 266 32-310 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 9.3E-39 3.2E-43 346.2 21.4 277 23-309 118-452 (1249)
3 1z6t_A APAF-1, apoptotic prote 100.0 3.8E-36 1.3E-40 302.0 15.6 274 23-306 118-449 (591)
4 1vt4_I APAF-1 related killer D 100.0 2.4E-34 8.3E-39 292.3 16.2 258 29-302 128-436 (1221)
5 2qen_A Walker-type ATPase; unk 99.7 1.5E-17 5.1E-22 155.4 9.9 264 23-303 6-349 (350)
6 2fna_A Conserved hypothetical 99.7 5E-16 1.7E-20 145.3 15.7 262 23-302 7-356 (357)
7 1w5s_A Origin recognition comp 99.7 1E-15 3.5E-20 146.3 16.0 271 23-298 16-387 (412)
8 1fnn_A CDC6P, cell division co 99.5 7.9E-13 2.7E-17 125.1 18.1 280 25-309 13-387 (389)
9 2qby_B CDC6 homolog 3, cell di 99.5 6.3E-13 2.1E-17 125.7 16.0 250 28-287 19-339 (384)
10 2qby_A CDC6 homolog 1, cell di 99.4 1.6E-12 5.4E-17 122.8 14.3 258 23-287 14-348 (386)
11 2v1u_A Cell division control p 99.4 3E-12 1E-16 121.0 16.0 258 25-287 15-351 (387)
12 1njg_A DNA polymerase III subu 99.2 1.7E-10 5.7E-15 101.3 11.4 132 26-168 20-166 (250)
13 2chg_A Replication factor C sm 99.1 5.8E-10 2E-14 96.5 12.0 127 25-168 13-142 (226)
14 1sxj_B Activator 1 37 kDa subu 99.0 2.2E-09 7.4E-14 98.7 10.7 164 26-207 18-206 (323)
15 1iqp_A RFCS; clamp loader, ext 98.8 1.2E-08 4.2E-13 93.7 8.8 125 26-168 22-150 (327)
16 1jbk_A CLPB protein; beta barr 98.8 2.1E-08 7.3E-13 84.3 9.4 50 27-78 20-69 (195)
17 1hqc_A RUVB; extended AAA-ATPa 98.8 3E-09 1E-13 97.9 4.1 52 26-77 9-63 (324)
18 2chq_A Replication factor C sm 98.7 4.5E-08 1.5E-12 89.6 10.5 124 26-168 14-142 (319)
19 2p65_A Hypothetical protein PF 98.7 1.1E-07 3.6E-12 79.7 10.8 50 27-78 20-69 (187)
20 1jr3_A DNA polymerase III subu 98.7 1.5E-07 5E-12 88.2 12.4 51 27-78 14-64 (373)
21 3te6_A Regulatory protein SIR3 98.7 1.7E-07 5.9E-12 85.3 11.7 108 30-142 21-144 (318)
22 3pfi_A Holliday junction ATP-d 98.6 1.2E-07 4.2E-12 87.7 10.5 53 27-79 27-82 (338)
23 3d8b_A Fidgetin-like protein 1 98.5 4E-07 1.4E-11 84.9 11.5 70 3-77 63-142 (357)
24 1sxj_D Activator 1 41 kDa subu 98.5 5E-07 1.7E-11 83.9 10.9 51 25-77 33-83 (353)
25 3b9p_A CG5977-PA, isoform A; A 98.5 2.9E-06 9.9E-11 76.8 14.4 68 9-77 2-79 (297)
26 3bos_A Putative DNA replicatio 98.4 1.6E-07 5.5E-12 82.1 5.5 60 26-87 25-87 (242)
27 3h4m_A Proteasome-activating n 98.4 7.2E-07 2.5E-11 80.3 9.4 56 23-78 11-77 (285)
28 3n70_A Transport activator; si 98.4 5.5E-07 1.9E-11 72.5 7.7 47 30-76 2-48 (145)
29 3eie_A Vacuolar protein sortin 98.4 2.4E-06 8.2E-11 78.5 11.9 56 23-78 12-77 (322)
30 2z4s_A Chromosomal replication 98.3 7.5E-07 2.6E-11 85.4 8.0 124 29-167 105-236 (440)
31 3syl_A Protein CBBX; photosynt 98.3 1.4E-06 4.8E-11 79.4 8.6 49 30-78 32-93 (309)
32 3ec2_A DNA replication protein 98.3 1.4E-06 4.8E-11 72.8 7.6 120 29-167 10-142 (180)
33 2zan_A Vacuolar protein sortin 98.3 6.9E-06 2.3E-10 78.8 13.0 54 23-76 128-191 (444)
34 2qp9_X Vacuolar protein sortin 98.3 3.7E-06 1.3E-10 78.2 10.6 54 24-77 46-109 (355)
35 3u61_B DNA polymerase accessor 98.3 1.8E-06 6E-11 79.4 8.3 121 26-168 23-146 (324)
36 2qz4_A Paraplegin; AAA+, SPG7, 98.2 5.4E-06 1.8E-10 73.4 10.5 52 27-78 4-65 (262)
37 1d2n_A N-ethylmaleimide-sensit 98.2 1.8E-05 6.2E-10 70.6 13.8 50 28-77 32-89 (272)
38 1xwi_A SKD1 protein; VPS4B, AA 98.2 3E-05 1E-09 71.0 15.4 53 24-76 7-69 (322)
39 2w58_A DNAI, primosome compone 98.2 3E-06 1E-10 72.1 7.8 61 27-87 23-89 (202)
40 3uk6_A RUVB-like 2; hexameric 98.2 6.1E-06 2.1E-10 77.1 10.2 52 28-79 43-97 (368)
41 3vfd_A Spastin; ATPase, microt 98.2 8E-06 2.7E-10 77.0 11.0 53 25-77 111-173 (389)
42 3cf0_A Transitional endoplasmi 98.2 7.2E-06 2.5E-10 74.5 10.0 54 24-77 10-74 (301)
43 1sxj_E Activator 1 40 kDa subu 98.2 1.2E-05 4.1E-10 74.6 11.6 48 27-76 12-60 (354)
44 3pvs_A Replication-associated 98.1 2.8E-06 9.6E-11 81.4 6.8 53 25-79 22-77 (447)
45 1l8q_A Chromosomal replication 98.1 7E-06 2.4E-10 75.3 9.3 126 25-167 7-140 (324)
46 1sxj_A Activator 1 95 kDa subu 98.1 4.8E-06 1.6E-10 81.5 8.1 50 27-76 37-101 (516)
47 3pxg_A Negative regulator of g 98.1 1.6E-05 5.4E-10 76.8 10.6 49 28-78 179-227 (468)
48 3co5_A Putative two-component 98.0 1E-06 3.6E-11 70.7 1.0 48 29-76 4-51 (143)
49 1qvr_A CLPB protein; coiled co 98.0 1.5E-05 5E-10 82.9 9.7 48 28-77 169-216 (854)
50 1r6b_X CLPA protein; AAA+, N-t 98.0 6.9E-05 2.4E-09 76.9 14.2 47 29-77 186-232 (758)
51 4b4t_J 26S protease regulatory 98.0 4.2E-05 1.5E-09 71.4 11.3 52 28-79 147-209 (405)
52 2r62_A Cell division protease 98.0 7.6E-06 2.6E-10 72.8 5.6 57 24-80 6-72 (268)
53 1in4_A RUVB, holliday junction 98.0 3.2E-05 1.1E-09 71.3 10.0 52 27-78 23-77 (334)
54 4fcw_A Chaperone protein CLPB; 97.9 1.1E-05 3.8E-10 73.4 6.5 58 29-86 17-81 (311)
55 1lv7_A FTSH; alpha/beta domain 97.9 2.6E-05 9E-10 68.9 8.6 55 24-78 7-71 (257)
56 3hu3_A Transitional endoplasmi 97.9 1.7E-05 5.9E-10 76.7 7.6 48 29-76 204-262 (489)
57 4b4t_L 26S protease subunit RP 97.9 7.7E-05 2.6E-09 70.7 11.6 54 26-79 178-242 (437)
58 1sxj_C Activator 1 40 kDa subu 97.9 1.5E-05 5E-10 73.7 5.9 49 28-78 24-72 (340)
59 2bjv_A PSP operon transcriptio 97.9 1.8E-05 6.1E-10 70.3 6.2 49 29-77 6-54 (265)
60 3pxi_A Negative regulator of g 97.8 6.1E-05 2.1E-09 77.3 10.5 49 28-78 179-227 (758)
61 2gno_A DNA polymerase III, gam 97.8 0.00014 4.8E-09 65.9 11.6 117 33-168 1-122 (305)
62 2kjq_A DNAA-related protein; s 97.8 1.7E-05 5.9E-10 63.9 4.8 36 52-87 36-71 (149)
63 1a5t_A Delta prime, HOLB; zinc 97.8 0.00024 8.1E-09 65.4 12.5 43 35-78 8-50 (334)
64 1ojl_A Transcriptional regulat 97.7 6.4E-05 2.2E-09 68.2 7.8 48 29-76 2-49 (304)
65 2ce7_A Cell division protein F 97.6 0.00019 6.5E-09 69.0 9.4 51 28-78 15-75 (476)
66 4b4t_H 26S protease regulatory 97.6 0.00019 6.7E-09 68.0 9.2 54 26-79 206-270 (467)
67 4b4t_K 26S protease regulatory 97.6 0.00016 5.3E-09 68.4 8.4 53 27-79 170-233 (428)
68 2c9o_A RUVB-like 1; hexameric 97.6 0.00019 6.6E-09 69.0 8.8 51 29-79 37-90 (456)
69 4b4t_M 26S protease regulatory 97.5 0.00026 8.9E-09 67.0 8.5 55 25-79 177-242 (434)
70 3pxi_A Negative regulator of g 97.5 0.00021 7.1E-09 73.3 8.3 59 29-87 491-556 (758)
71 4b4t_I 26S protease regulatory 97.4 0.00033 1.1E-08 65.7 8.4 54 26-79 179-243 (437)
72 2qgz_A Helicase loader, putati 97.4 0.00036 1.2E-08 63.4 8.0 59 29-87 124-188 (308)
73 2cvh_A DNA repair and recombin 97.4 0.00047 1.6E-08 59.0 8.2 33 52-87 20-52 (220)
74 3cf2_A TER ATPase, transitiona 97.3 0.00028 9.6E-09 71.9 6.5 49 29-77 204-263 (806)
75 2dhr_A FTSH; AAA+ protein, hex 97.3 0.00092 3.1E-08 64.6 9.3 54 24-77 26-89 (499)
76 1qvr_A CLPB protein; coiled co 97.2 0.0009 3.1E-08 69.5 9.4 49 30-78 559-614 (854)
77 1ofh_A ATP-dependent HSL prote 97.2 0.00016 5.6E-09 65.4 3.2 49 29-77 15-75 (310)
78 3hr8_A Protein RECA; alpha and 97.2 0.0032 1.1E-07 58.1 11.5 81 5-87 9-96 (356)
79 3m6a_A ATP-dependent protease 97.1 0.0008 2.7E-08 66.1 7.5 48 31-78 83-134 (543)
80 1g5t_A COB(I)alamin adenosyltr 97.1 0.0011 3.7E-08 55.5 7.1 114 53-168 29-163 (196)
81 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.00037 1.2E-08 63.0 4.2 33 52-87 123-155 (331)
82 2r44_A Uncharacterized protein 97.1 0.0003 1E-08 64.5 3.7 47 29-79 27-73 (331)
83 1iy2_A ATP-dependent metallopr 97.1 0.00046 1.6E-08 61.6 4.8 54 24-77 35-98 (278)
84 1ypw_A Transitional endoplasmi 97.0 0.00041 1.4E-08 71.4 4.8 49 29-77 204-263 (806)
85 3jvv_A Twitching mobility prot 97.0 0.00019 6.6E-09 66.4 2.1 109 53-170 124-233 (356)
86 1rz3_A Hypothetical protein rb 97.0 0.0011 3.7E-08 56.1 6.6 44 34-77 3-47 (201)
87 2x8a_A Nuclear valosin-contain 97.0 0.0021 7E-08 57.3 8.7 50 28-77 9-69 (274)
88 1r6b_X CLPA protein; AAA+, N-t 97.0 0.0016 5.5E-08 66.7 8.9 48 29-76 458-512 (758)
89 3dm5_A SRP54, signal recogniti 97.0 0.018 6.1E-07 54.5 15.3 36 51-86 99-134 (443)
90 4gp7_A Metallophosphoesterase; 97.0 0.001 3.4E-08 54.7 6.0 21 52-72 9-29 (171)
91 3c8u_A Fructokinase; YP_612366 96.9 0.00083 2.8E-08 57.1 5.2 41 37-77 7-47 (208)
92 1qhx_A CPT, protein (chloramph 96.9 0.00039 1.3E-08 57.4 3.0 25 53-77 4-28 (178)
93 2orw_A Thymidine kinase; TMTK, 96.9 0.00014 4.6E-09 60.9 0.2 107 53-168 4-113 (184)
94 3hws_A ATP-dependent CLP prote 96.9 0.00071 2.4E-08 62.9 5.0 48 30-77 16-76 (363)
95 3kb2_A SPBC2 prophage-derived 96.9 0.00055 1.9E-08 56.0 3.2 25 53-77 2-26 (173)
96 2b8t_A Thymidine kinase; deoxy 96.8 0.00069 2.4E-08 58.2 3.8 107 52-169 12-127 (223)
97 1nks_A Adenylate kinase; therm 96.8 0.0014 5E-08 54.5 5.6 27 53-79 2-28 (194)
98 1odf_A YGR205W, hypothetical 3 96.8 0.0016 5.5E-08 58.4 6.0 29 49-77 28-56 (290)
99 3e70_C DPA, signal recognition 96.8 0.0078 2.7E-07 54.9 10.6 29 51-79 128-156 (328)
100 2px0_A Flagellar biosynthesis 96.8 0.034 1.2E-06 49.8 14.8 37 51-87 104-141 (296)
101 3vaa_A Shikimate kinase, SK; s 96.8 0.0008 2.7E-08 56.8 3.5 26 52-77 25-50 (199)
102 1xp8_A RECA protein, recombina 96.7 0.011 3.9E-07 54.7 11.3 50 38-87 59-109 (366)
103 3io5_A Recombination and repai 96.7 0.0075 2.6E-07 54.3 9.5 34 54-87 30-65 (333)
104 1zu4_A FTSY; GTPase, signal re 96.7 0.0034 1.2E-07 57.1 7.5 37 51-87 104-140 (320)
105 3trf_A Shikimate kinase, SK; a 96.7 0.00087 3E-08 55.6 3.2 25 52-76 5-29 (185)
106 2zr9_A Protein RECA, recombina 96.7 0.012 4.2E-07 54.1 11.0 80 6-87 11-96 (349)
107 1n0w_A DNA repair protein RAD5 96.6 0.0047 1.6E-07 53.5 7.8 36 52-87 24-65 (243)
108 3uie_A Adenylyl-sulfate kinase 96.6 0.0021 7.2E-08 54.2 5.3 27 51-77 24-50 (200)
109 3t15_A Ribulose bisphosphate c 96.6 0.0013 4.5E-08 59.1 4.3 30 50-79 34-63 (293)
110 3kl4_A SRP54, signal recogniti 96.6 0.0083 2.8E-07 56.7 9.8 37 51-87 96-132 (433)
111 2yvu_A Probable adenylyl-sulfa 96.6 0.0024 8.1E-08 53.1 5.5 28 51-78 12-39 (186)
112 1ly1_A Polynucleotide kinase; 96.6 0.0012 4.1E-08 54.4 3.6 22 53-74 3-24 (181)
113 3tlx_A Adenylate kinase 2; str 96.6 0.0016 5.3E-08 56.9 4.4 42 35-76 12-53 (243)
114 3tqc_A Pantothenate kinase; bi 96.6 0.0032 1.1E-07 57.2 6.6 47 31-77 69-117 (321)
115 2xxa_A Signal recognition part 96.6 0.011 3.9E-07 56.0 10.6 81 4-87 45-136 (433)
116 3bh0_A DNAB-like replicative h 96.6 0.0092 3.1E-07 54.2 9.7 51 52-109 68-118 (315)
117 2rhm_A Putative kinase; P-loop 96.6 0.0015 5.2E-08 54.4 4.1 26 51-76 4-29 (193)
118 1ixz_A ATP-dependent metallopr 96.6 0.00092 3.1E-08 58.7 2.8 54 24-77 11-74 (254)
119 2z43_A DNA repair and recombin 96.6 0.0054 1.8E-07 56.0 8.0 36 52-87 107-148 (324)
120 1zuh_A Shikimate kinase; alpha 96.6 0.0013 4.3E-08 53.7 3.4 27 51-77 6-32 (168)
121 3ice_A Transcription terminati 96.6 0.00073 2.5E-08 62.5 2.0 27 52-78 174-200 (422)
122 1v5w_A DMC1, meiotic recombina 96.6 0.01 3.5E-07 54.5 9.8 38 50-87 120-163 (343)
123 3nbx_X ATPase RAVA; AAA+ ATPas 96.6 0.0023 7.8E-08 61.9 5.5 45 29-77 22-66 (500)
124 3lw7_A Adenylate kinase relate 96.5 0.0012 4.2E-08 53.9 3.0 22 53-75 2-23 (179)
125 1um8_A ATP-dependent CLP prote 96.5 0.0018 6E-08 60.5 4.3 48 30-77 22-97 (376)
126 1ex7_A Guanylate kinase; subst 96.5 0.00086 2.9E-08 55.9 1.8 29 53-81 2-30 (186)
127 1xjc_A MOBB protein homolog; s 96.5 0.0026 9E-08 52.0 4.6 33 51-83 3-36 (169)
128 1kht_A Adenylate kinase; phosp 96.5 0.003 1E-07 52.4 5.2 27 53-79 4-30 (192)
129 1knq_A Gluconate kinase; ALFA/ 96.5 0.0024 8.1E-08 52.5 4.4 26 51-76 7-32 (175)
130 2plr_A DTMP kinase, probable t 96.5 0.0034 1.2E-07 53.1 5.6 28 53-80 5-32 (213)
131 3b9q_A Chloroplast SRP recepto 96.4 0.009 3.1E-07 53.8 8.4 28 51-78 99-126 (302)
132 3sr0_A Adenylate kinase; phosp 96.4 0.0035 1.2E-07 53.1 5.4 23 54-76 2-24 (206)
133 1g8p_A Magnesium-chelatase 38 96.4 0.0011 3.6E-08 61.2 2.3 51 25-77 20-70 (350)
134 1kag_A SKI, shikimate kinase I 96.4 0.0014 4.7E-08 53.7 2.7 25 53-77 5-29 (173)
135 3t61_A Gluconokinase; PSI-biol 96.4 0.0013 4.5E-08 55.5 2.6 25 52-76 18-42 (202)
136 1nn5_A Similar to deoxythymidy 96.4 0.0028 9.6E-08 53.8 4.7 29 52-80 9-37 (215)
137 1ukz_A Uridylate kinase; trans 96.4 0.0023 7.7E-08 54.0 4.1 27 50-76 13-39 (203)
138 2ze6_A Isopentenyl transferase 96.4 0.0019 6.4E-08 56.8 3.7 25 53-77 2-26 (253)
139 3iij_A Coilin-interacting nucl 96.4 0.0016 5.5E-08 53.8 3.0 25 52-76 11-35 (180)
140 1zp6_A Hypothetical protein AT 96.4 0.0018 6E-08 54.0 3.2 24 52-75 9-32 (191)
141 4eun_A Thermoresistant glucoki 96.4 0.0029 9.8E-08 53.3 4.5 26 51-76 28-53 (200)
142 2ga8_A Hypothetical 39.9 kDa p 96.4 0.0018 6.3E-08 59.3 3.5 47 34-80 4-52 (359)
143 1sky_E F1-ATPase, F1-ATP synth 96.4 0.0074 2.5E-07 57.4 7.7 33 54-86 153-186 (473)
144 1tev_A UMP-CMP kinase; ploop, 96.4 0.0023 8E-08 53.3 3.9 25 52-76 3-27 (196)
145 2og2_A Putative signal recogni 96.4 0.0078 2.7E-07 55.5 7.6 28 51-78 156-183 (359)
146 2r9u_A Variable lymphocyte rec 96.4 0.0051 1.7E-07 50.6 5.8 59 320-380 33-97 (174)
147 1j8m_F SRP54, signal recogniti 96.3 0.0086 2.9E-07 53.8 7.7 36 52-87 98-133 (297)
148 3p32_A Probable GTPase RV1496/ 96.3 0.0071 2.4E-07 55.9 7.3 42 38-79 65-106 (355)
149 2c95_A Adenylate kinase 1; tra 96.3 0.0023 7.7E-08 53.5 3.6 25 52-76 9-33 (196)
150 2hf9_A Probable hydrogenase ni 96.3 0.0043 1.5E-07 53.1 5.5 41 37-79 25-65 (226)
151 1uj2_A Uridine-cytidine kinase 96.3 0.0025 8.4E-08 55.9 3.9 28 50-77 20-47 (252)
152 2vli_A Antibiotic resistance p 96.3 0.0013 4.5E-08 54.3 2.0 26 52-77 5-30 (183)
153 2jaq_A Deoxyguanosine kinase; 96.3 0.0024 8.1E-08 53.7 3.6 24 54-77 2-25 (205)
154 1y63_A LMAJ004144AAA protein; 96.3 0.0026 9.1E-08 52.8 3.8 25 51-75 9-33 (184)
155 1kgd_A CASK, peripheral plasma 96.3 0.0024 8.1E-08 52.9 3.5 25 53-77 6-30 (180)
156 2wsm_A Hydrogenase expression/ 96.3 0.0041 1.4E-07 53.0 5.1 45 33-79 13-57 (221)
157 3fwy_A Light-independent proto 96.3 0.0041 1.4E-07 56.4 5.3 38 50-87 46-83 (314)
158 2iyv_A Shikimate kinase, SK; t 96.3 0.0018 6E-08 53.7 2.6 24 54-77 4-27 (184)
159 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0027 9.3E-08 56.0 3.9 26 52-77 4-29 (260)
160 1uf9_A TT1252 protein; P-loop, 96.3 0.0028 9.5E-08 53.3 3.8 26 50-75 6-31 (203)
161 3cm0_A Adenylate kinase; ATP-b 96.3 0.0033 1.1E-07 52.1 4.2 25 52-76 4-28 (186)
162 1tue_A Replication protein E1; 96.2 0.0036 1.2E-07 52.6 4.3 43 35-78 42-84 (212)
163 2cdn_A Adenylate kinase; phosp 96.2 0.0031 1.1E-07 53.1 4.0 26 52-77 20-45 (201)
164 1qf9_A UMP/CMP kinase, protein 96.2 0.0037 1.3E-07 51.9 4.4 25 52-76 6-30 (194)
165 1via_A Shikimate kinase; struc 96.2 0.0021 7.1E-08 52.9 2.8 24 54-77 6-29 (175)
166 1gvn_B Zeta; postsegregational 96.2 0.0041 1.4E-07 55.7 4.8 26 51-76 32-57 (287)
167 1aky_A Adenylate kinase; ATP:A 96.2 0.0028 9.7E-08 54.2 3.6 26 52-77 4-29 (220)
168 1e6c_A Shikimate kinase; phosp 96.2 0.0023 7.8E-08 52.3 2.9 25 53-77 3-27 (173)
169 2bwj_A Adenylate kinase 5; pho 96.2 0.0028 9.4E-08 53.1 3.4 25 53-77 13-37 (199)
170 2qor_A Guanylate kinase; phosp 96.2 0.0022 7.7E-08 54.2 2.9 26 52-77 12-37 (204)
171 3g39_A Variable lymphocyte rec 96.2 0.007 2.4E-07 49.4 5.8 58 321-380 31-94 (170)
172 3tau_A Guanylate kinase, GMP k 96.2 0.0027 9.1E-08 54.0 3.3 28 51-78 7-34 (208)
173 2v9t_B SLIT homolog 2 protein 96.2 0.0079 2.7E-07 51.4 6.3 59 320-380 56-120 (220)
174 2pt5_A Shikimate kinase, SK; a 96.2 0.0032 1.1E-07 51.2 3.5 24 54-77 2-25 (168)
175 3umf_A Adenylate kinase; rossm 96.1 0.0038 1.3E-07 53.3 4.1 27 50-76 27-53 (217)
176 2i1q_A DNA repair and recombin 96.1 0.011 3.8E-07 53.7 7.4 26 51-76 97-122 (322)
177 2wwf_A Thymidilate kinase, put 96.1 0.0052 1.8E-07 52.0 4.9 28 52-79 10-37 (212)
178 4b8c_D Glucose-repressible alc 96.1 0.003 1E-07 64.3 3.9 62 319-383 246-313 (727)
179 2qt1_A Nicotinamide riboside k 96.1 0.0037 1.3E-07 52.9 3.9 26 50-75 19-44 (207)
180 3asz_A Uridine kinase; cytidin 96.1 0.0042 1.4E-07 52.7 4.2 27 51-77 5-31 (211)
181 1vma_A Cell division protein F 96.1 0.01 3.5E-07 53.5 6.9 53 35-87 81-139 (306)
182 2bdt_A BH3686; alpha-beta prot 96.1 0.0035 1.2E-07 52.1 3.6 22 53-74 3-24 (189)
183 3a00_A Guanylate kinase, GMP k 96.1 0.0022 7.4E-08 53.4 2.2 28 53-80 2-29 (186)
184 2pbr_A DTMP kinase, thymidylat 96.1 0.0037 1.3E-07 52.1 3.6 25 54-78 2-26 (195)
185 1cke_A CK, MSSA, protein (cyti 96.1 0.0037 1.3E-07 53.6 3.7 24 53-76 6-29 (227)
186 1g41_A Heat shock protein HSLU 96.1 0.0056 1.9E-07 58.0 5.1 51 29-79 15-77 (444)
187 3hjn_A DTMP kinase, thymidylat 96.1 0.021 7.3E-07 47.9 8.3 34 54-87 2-35 (197)
188 2ewv_A Twitching motility prot 96.1 0.016 5.5E-07 53.8 8.2 110 52-169 136-245 (372)
189 2if2_A Dephospho-COA kinase; a 96.0 0.0037 1.3E-07 52.7 3.3 22 53-74 2-23 (204)
190 1zd8_A GTP:AMP phosphotransfer 96.0 0.0034 1.2E-07 54.0 3.1 25 52-76 7-31 (227)
191 2j41_A Guanylate kinase; GMP, 96.0 0.0039 1.3E-07 52.5 3.4 24 53-76 7-30 (207)
192 1zak_A Adenylate kinase; ATP:A 96.0 0.0034 1.2E-07 53.8 3.1 26 52-77 5-30 (222)
193 3e6j_A Variable lymphocyte rec 96.0 0.0081 2.8E-07 51.7 5.5 60 319-380 87-151 (229)
194 3ney_A 55 kDa erythrocyte memb 96.0 0.0035 1.2E-07 52.6 3.0 28 51-78 18-45 (197)
195 3tr0_A Guanylate kinase, GMP k 96.0 0.0038 1.3E-07 52.5 3.3 24 53-76 8-31 (205)
196 1u94_A RECA protein, recombina 96.0 0.014 4.9E-07 53.8 7.4 50 38-87 48-98 (356)
197 1rj9_A FTSY, signal recognitio 96.0 0.0073 2.5E-07 54.5 5.3 36 51-87 101-136 (304)
198 2bbw_A Adenylate kinase 4, AK4 96.0 0.0042 1.4E-07 54.2 3.6 25 52-76 27-51 (246)
199 2ck3_D ATP synthase subunit be 96.0 0.023 8E-07 53.9 8.9 53 53-109 154-207 (482)
200 2pez_A Bifunctional 3'-phospho 96.0 0.0053 1.8E-07 50.6 4.0 26 52-77 5-30 (179)
201 4a1f_A DNAB helicase, replicat 96.0 0.039 1.3E-06 50.4 10.1 51 53-110 47-97 (338)
202 2p5t_B PEZT; postsegregational 96.0 0.0056 1.9E-07 53.7 4.4 27 51-77 31-57 (253)
203 2z0h_A DTMP kinase, thymidylat 95.9 0.0048 1.7E-07 51.5 3.7 25 54-78 2-26 (197)
204 3fb4_A Adenylate kinase; psych 95.9 0.0048 1.6E-07 52.5 3.7 23 54-76 2-24 (216)
205 2grj_A Dephospho-COA kinase; T 95.9 0.0056 1.9E-07 51.3 4.0 26 51-76 11-36 (192)
206 3be4_A Adenylate kinase; malar 95.9 0.0039 1.3E-07 53.3 3.0 24 53-76 6-29 (217)
207 1ye8_A Protein THEP1, hypothet 95.9 0.0053 1.8E-07 50.7 3.7 24 54-77 2-25 (178)
208 1jjv_A Dephospho-COA kinase; P 95.9 0.0045 1.5E-07 52.3 3.3 22 53-74 3-24 (206)
209 2yhs_A FTSY, cell division pro 95.9 0.019 6.6E-07 54.9 7.9 36 51-87 292-327 (503)
210 4fcg_A Uncharacterized protein 95.8 0.0069 2.4E-07 55.2 4.6 59 319-380 103-167 (328)
211 1m7g_A Adenylylsulfate kinase; 95.8 0.0064 2.2E-07 51.6 4.1 27 51-77 24-50 (211)
212 1a9n_A U2A', U2A'; complex (nu 95.8 0.0079 2.7E-07 49.3 4.5 40 341-380 59-104 (176)
213 4hlc_A DTMP kinase, thymidylat 95.8 0.031 1.1E-06 47.2 8.3 30 53-82 3-32 (205)
214 1gtv_A TMK, thymidylate kinase 95.8 0.0029 1E-07 53.7 1.9 25 54-78 2-26 (214)
215 2dr3_A UPF0273 protein PH0284; 95.8 0.0082 2.8E-07 52.0 4.8 35 53-87 24-58 (247)
216 4a74_A DNA repair and recombin 95.8 0.013 4.3E-07 50.2 6.0 36 52-87 25-66 (231)
217 3dl0_A Adenylate kinase; phosp 95.8 0.0052 1.8E-07 52.3 3.4 23 54-76 2-24 (216)
218 3end_A Light-independent proto 95.8 0.0097 3.3E-07 53.7 5.3 38 50-87 39-76 (307)
219 2wfh_A SLIT homolog 2 protein 95.8 0.013 4.5E-07 48.9 5.7 60 319-380 53-118 (193)
220 2f6r_A COA synthase, bifunctio 95.8 0.0061 2.1E-07 54.4 3.8 25 50-74 73-97 (281)
221 3e6j_A Variable lymphocyte rec 95.8 0.015 5.1E-07 50.0 6.1 60 319-380 63-128 (229)
222 3l0o_A Transcription terminati 95.7 0.0013 4.6E-08 60.6 -0.6 38 40-78 164-201 (427)
223 2v54_A DTMP kinase, thymidylat 95.7 0.0059 2E-07 51.3 3.5 24 53-76 5-28 (204)
224 1lvg_A Guanylate kinase, GMP k 95.7 0.0044 1.5E-07 52.1 2.6 25 53-77 5-29 (198)
225 4e22_A Cytidylate kinase; P-lo 95.7 0.0062 2.1E-07 53.4 3.5 25 52-76 27-51 (252)
226 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.008 2.7E-07 51.5 4.2 35 53-87 24-58 (235)
227 1g8f_A Sulfate adenylyltransfe 95.7 0.01 3.5E-07 57.3 5.2 49 30-78 373-421 (511)
228 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.019 6.4E-07 52.5 6.8 103 53-168 172-275 (330)
229 1vht_A Dephospho-COA kinase; s 95.7 0.0075 2.6E-07 51.4 3.8 23 52-74 4-26 (218)
230 2o6r_A Variable lymphocyte rec 95.6 0.018 6.2E-07 47.0 6.1 60 319-380 51-116 (177)
231 3zvl_A Bifunctional polynucleo 95.6 0.034 1.2E-06 52.5 8.7 27 50-76 256-282 (416)
232 2v9t_B SLIT homolog 2 protein 95.6 0.018 6E-07 49.2 6.1 60 319-380 79-144 (220)
233 3k1j_A LON protease, ATP-depen 95.6 0.0062 2.1E-07 60.6 3.7 48 29-80 41-88 (604)
234 2jeo_A Uridine-cytidine kinase 95.6 0.0085 2.9E-07 52.2 4.1 26 51-76 24-49 (245)
235 3d3q_A TRNA delta(2)-isopenten 95.6 0.0074 2.5E-07 55.1 3.7 25 53-77 8-32 (340)
236 2ell_A Acidic leucine-rich nuc 95.6 0.0076 2.6E-07 48.9 3.5 17 364-380 120-136 (168)
237 3aez_A Pantothenate kinase; tr 95.6 0.0087 3E-07 54.2 4.2 29 50-78 88-116 (312)
238 1fx0_B ATP synthase beta chain 95.6 0.034 1.2E-06 53.0 8.4 53 53-109 166-219 (498)
239 3ake_A Cytidylate kinase; CMP 95.6 0.0079 2.7E-07 50.6 3.7 24 54-77 4-27 (208)
240 2r9u_A Variable lymphocyte rec 95.6 0.014 4.9E-07 47.8 5.2 60 319-380 56-121 (174)
241 3nwj_A ATSK2; P loop, shikimat 95.6 0.0047 1.6E-07 54.0 2.3 25 53-77 49-73 (250)
242 3upu_A ATP-dependent DNA helic 95.6 0.057 2E-06 51.6 10.1 27 54-80 47-73 (459)
243 2r8r_A Sensor protein; KDPD, P 95.6 0.012 4E-07 50.4 4.6 34 54-87 8-41 (228)
244 1ak2_A Adenylate kinase isoenz 95.6 0.008 2.7E-07 51.9 3.7 26 52-77 16-41 (233)
245 1e4v_A Adenylate kinase; trans 95.6 0.008 2.7E-07 51.1 3.7 23 54-76 2-24 (214)
246 3cf2_A TER ATPase, transitiona 95.6 0.0092 3.2E-07 60.8 4.6 49 29-77 477-536 (806)
247 1np6_A Molybdopterin-guanine d 95.6 0.012 4.2E-07 48.3 4.6 27 52-78 6-32 (174)
248 1cp2_A CP2, nitrogenase iron p 95.5 0.016 5.4E-07 51.1 5.6 35 53-87 2-36 (269)
249 3bgw_A DNAB-like replicative h 95.5 0.019 6.4E-07 54.7 6.5 36 52-87 197-232 (444)
250 4g8a_A TOLL-like receptor 4; l 95.5 0.01 3.5E-07 58.8 4.8 61 319-381 75-141 (635)
251 2o6r_A Variable lymphocyte rec 95.5 0.021 7.2E-07 46.7 6.0 56 320-377 76-137 (177)
252 2xb4_A Adenylate kinase; ATP-b 95.5 0.0082 2.8E-07 51.5 3.6 23 54-76 2-24 (223)
253 4b8c_D Glucose-repressible alc 95.5 0.0074 2.5E-07 61.4 3.7 62 319-383 223-290 (727)
254 1yrb_A ATP(GTP)binding protein 95.5 0.017 5.7E-07 50.6 5.6 27 51-77 13-39 (262)
255 3crm_A TRNA delta(2)-isopenten 95.5 0.0081 2.8E-07 54.4 3.5 24 53-76 6-29 (323)
256 2f1r_A Molybdopterin-guanine d 95.5 0.0065 2.2E-07 49.8 2.7 26 53-78 3-28 (171)
257 2o6s_A Variable lymphocyte rec 95.5 0.022 7.5E-07 47.9 6.1 60 319-380 51-116 (208)
258 3r20_A Cytidylate kinase; stru 95.5 0.0092 3.1E-07 51.5 3.7 26 52-77 9-34 (233)
259 2ifg_A High affinity nerve gro 95.5 0.017 5.7E-07 52.9 5.7 60 319-380 30-96 (347)
260 2q6t_A DNAB replication FORK h 95.4 0.061 2.1E-06 51.2 9.7 52 52-110 200-252 (444)
261 1znw_A Guanylate kinase, GMP k 95.4 0.0086 3E-07 50.6 3.4 25 53-77 21-45 (207)
262 2ehv_A Hypothetical protein PH 95.4 0.011 3.8E-07 51.3 4.2 35 53-87 31-66 (251)
263 3a8t_A Adenylate isopentenyltr 95.4 0.0074 2.5E-07 54.9 3.1 26 51-76 39-64 (339)
264 3foz_A TRNA delta(2)-isopenten 95.4 0.011 3.6E-07 53.2 4.0 26 51-76 9-34 (316)
265 1z6g_A Guanylate kinase; struc 95.4 0.0068 2.3E-07 51.8 2.6 24 53-76 24-47 (218)
266 1a7j_A Phosphoribulokinase; tr 95.4 0.0048 1.6E-07 55.4 1.6 27 51-77 4-30 (290)
267 2o6s_A Variable lymphocyte rec 95.4 0.024 8.3E-07 47.6 6.1 61 319-381 75-141 (208)
268 1u0j_A DNA replication protein 95.4 0.017 5.6E-07 50.8 5.0 36 41-76 93-128 (267)
269 1sq5_A Pantothenate kinase; P- 95.4 0.022 7.5E-07 51.5 6.0 28 50-77 78-105 (308)
270 1htw_A HI0065; nucleotide-bind 95.4 0.011 3.8E-07 47.7 3.6 26 51-76 32-57 (158)
271 2eyu_A Twitching motility prot 95.4 0.013 4.6E-07 51.5 4.4 110 52-169 25-134 (261)
272 3exa_A TRNA delta(2)-isopenten 95.3 0.0092 3.2E-07 53.7 3.3 24 53-76 4-27 (322)
273 2afh_E Nitrogenase iron protei 95.3 0.017 6E-07 51.5 5.2 36 52-87 2-37 (289)
274 2j37_W Signal recognition part 95.3 0.026 8.9E-07 54.5 6.6 38 50-87 99-136 (504)
275 1cr0_A DNA primase/helicase; R 95.3 0.016 5.3E-07 52.0 4.8 35 53-87 36-71 (296)
276 1s96_A Guanylate kinase, GMP k 95.3 0.0092 3.1E-07 51.1 3.1 26 52-77 16-41 (219)
277 2r6a_A DNAB helicase, replicat 95.3 0.043 1.5E-06 52.4 8.1 35 53-87 204-239 (454)
278 2v70_A SLIT-2, SLIT homolog 2 95.3 0.027 9.1E-07 48.0 6.0 60 319-380 80-145 (220)
279 1ltq_A Polynucleotide kinase; 95.3 0.01 3.6E-07 53.2 3.6 23 53-75 3-25 (301)
280 4edh_A DTMP kinase, thymidylat 95.3 0.043 1.5E-06 46.6 7.2 27 53-79 7-33 (213)
281 2je0_A Acidic leucine-rich nuc 95.2 0.0058 2E-07 48.5 1.6 17 364-380 113-129 (149)
282 2v70_A SLIT-2, SLIT homolog 2 95.2 0.025 8.6E-07 48.2 5.7 60 319-380 56-121 (220)
283 3cmu_A Protein RECA, recombina 95.2 0.034 1.2E-06 61.9 7.9 80 51-140 1426-1515(2050)
284 2i3b_A HCR-ntpase, human cance 95.2 0.01 3.6E-07 49.5 3.1 24 54-77 3-26 (189)
285 1xku_A Decorin; proteoglycan, 95.2 0.023 8E-07 51.5 5.7 59 320-380 52-116 (330)
286 3cr8_A Sulfate adenylyltranfer 95.2 0.022 7.6E-07 55.7 5.7 47 32-78 349-395 (552)
287 3io3_A DEHA2D07832P; chaperone 95.2 0.029 9.8E-07 51.6 6.2 39 49-87 15-55 (348)
288 3vq2_A TLR4, TOLL-like recepto 95.2 0.024 8.1E-07 56.1 6.1 59 320-380 56-120 (606)
289 1nlf_A Regulatory protein REPA 95.1 0.024 8.2E-07 50.3 5.5 26 53-78 31-56 (279)
290 2p67_A LAO/AO transport system 95.1 0.031 1.1E-06 51.2 6.3 29 49-77 53-81 (341)
291 1ls1_A Signal recognition part 95.1 0.022 7.6E-07 51.1 5.2 36 51-86 97-132 (295)
292 1xku_A Decorin; proteoglycan, 95.1 0.03 1E-06 50.8 6.2 60 319-380 215-279 (330)
293 1q3t_A Cytidylate kinase; nucl 95.1 0.014 4.8E-07 50.4 3.8 27 50-76 14-40 (236)
294 4gzl_A RAS-related C3 botulinu 95.1 0.014 4.7E-07 49.1 3.6 44 29-74 9-52 (204)
295 2j9r_A Thymidine kinase; TK1, 95.1 0.038 1.3E-06 46.7 6.2 109 51-169 27-139 (214)
296 4eaq_A DTMP kinase, thymidylat 95.1 0.027 9.4E-07 48.4 5.5 28 51-78 25-52 (229)
297 2ocp_A DGK, deoxyguanosine kin 95.1 0.015 5.1E-07 50.4 3.8 26 52-77 2-27 (241)
298 2je0_A Acidic leucine-rich nuc 95.1 0.02 6.9E-07 45.2 4.3 56 320-379 42-103 (149)
299 2v3c_C SRP54, signal recogniti 95.0 0.011 3.6E-07 56.2 3.0 37 51-87 98-134 (432)
300 3lnc_A Guanylate kinase, GMP k 95.0 0.0079 2.7E-07 51.8 1.9 24 53-76 28-52 (231)
301 3m19_A Variable lymphocyte rec 95.0 0.034 1.2E-06 48.3 6.1 59 320-380 107-171 (251)
302 3g39_A Variable lymphocyte rec 95.0 0.029 9.8E-07 45.7 5.2 60 319-380 53-118 (170)
303 1w8a_A SLIT protein; signaling 95.0 0.027 9.3E-07 46.8 5.2 58 320-379 54-117 (192)
304 2qmh_A HPR kinase/phosphorylas 95.0 0.011 3.6E-07 49.5 2.5 24 53-76 35-58 (205)
305 2fz4_A DNA repair protein RAD2 95.0 0.36 1.2E-05 41.5 12.5 40 32-76 93-132 (237)
306 3e1s_A Exodeoxyribonuclease V, 95.0 0.091 3.1E-06 51.7 9.6 27 53-79 205-231 (574)
307 4g8a_A TOLL-like receptor 4; l 95.0 0.025 8.4E-07 56.0 5.7 59 319-379 99-163 (635)
308 1dce_A Protein (RAB geranylger 95.0 0.012 4.3E-07 57.9 3.4 57 319-379 462-523 (567)
309 2dyk_A GTP-binding protein; GT 95.0 0.016 5.6E-07 46.1 3.6 22 53-74 2-23 (161)
310 3iqw_A Tail-anchored protein t 94.9 0.035 1.2E-06 50.7 6.0 38 50-87 14-51 (334)
311 2ell_A Acidic leucine-rich nuc 94.9 0.013 4.6E-07 47.4 2.9 61 319-381 94-164 (168)
312 4ezg_A Putative uncharacterize 94.9 0.014 4.9E-07 48.7 3.2 41 339-380 129-175 (197)
313 3zq6_A Putative arsenical pump 94.9 0.041 1.4E-06 50.0 6.4 36 52-87 14-49 (324)
314 1m8p_A Sulfate adenylyltransfe 94.9 0.033 1.1E-06 54.8 6.1 28 50-77 394-421 (573)
315 1oix_A RAS-related protein RAB 94.9 0.016 5.4E-07 48.2 3.3 24 52-75 29-52 (191)
316 2axn_A 6-phosphofructo-2-kinas 94.9 0.027 9.2E-07 54.8 5.4 30 51-80 34-63 (520)
317 2gks_A Bifunctional SAT/APS ki 94.9 0.042 1.4E-06 53.8 6.7 46 33-78 353-398 (546)
318 1svm_A Large T antigen; AAA+ f 94.8 0.021 7.3E-07 53.0 4.4 27 50-76 167-193 (377)
319 3rfs_A Internalin B, repeat mo 94.8 0.046 1.6E-06 48.1 6.4 60 319-380 108-173 (272)
320 2wji_A Ferrous iron transport 94.8 0.021 7.1E-07 46.1 3.8 22 53-74 4-25 (165)
321 2z80_A TOLL-like receptor 2, v 94.8 0.026 8.7E-07 51.8 4.8 61 319-381 75-141 (353)
322 3vq2_A TLR4, TOLL-like recepto 94.8 0.036 1.2E-06 54.8 6.3 63 319-383 31-101 (606)
323 2wfh_A SLIT homolog 2 protein 94.8 0.036 1.2E-06 46.2 5.3 58 320-380 31-94 (193)
324 3eph_A TRNA isopentenyltransfe 94.8 0.019 6.5E-07 53.5 3.8 25 53-77 3-27 (409)
325 1a9n_A U2A', U2A'; complex (nu 94.8 0.012 4.1E-07 48.2 2.2 61 319-381 63-130 (176)
326 2xwt_C Thyrotropin receptor; s 94.7 0.026 8.9E-07 48.6 4.5 61 320-381 55-122 (239)
327 3a79_B TLR6, VLRB.59, TOLL-lik 94.7 0.028 9.4E-07 55.2 5.2 42 337-379 91-136 (562)
328 2zts_A Putative uncharacterize 94.7 0.027 9.4E-07 48.7 4.6 36 52-87 30-66 (251)
329 1ypw_A Transitional endoplasmi 94.7 0.018 6E-07 59.3 3.9 53 28-80 476-539 (806)
330 1p9a_G Platelet glycoprotein I 94.7 0.042 1.4E-06 49.0 5.9 60 319-380 123-188 (290)
331 2onk_A Molybdate/tungstate ABC 94.7 0.016 5.6E-07 50.2 3.1 23 53-75 25-47 (240)
332 2ft3_A Biglycan; proteoglycan, 94.7 0.035 1.2E-06 50.4 5.5 43 338-380 94-139 (332)
333 1wwl_A Monocyte differentiatio 94.7 0.045 1.5E-06 49.3 6.1 63 320-383 228-293 (312)
334 1z2a_A RAS-related protein RAB 94.7 0.024 8.3E-07 45.4 3.9 24 51-74 4-27 (168)
335 3vr4_D V-type sodium ATPase su 94.7 0.028 9.5E-07 53.1 4.7 84 53-140 152-258 (465)
336 1ogq_A PGIP-2, polygalacturona 94.7 0.015 5.1E-07 52.5 2.9 60 319-380 75-142 (313)
337 2qm8_A GTPase/ATPase; G protei 94.7 0.05 1.7E-06 49.7 6.4 29 49-77 52-80 (337)
338 3m19_A Variable lymphocyte rec 94.7 0.042 1.4E-06 47.7 5.7 61 319-381 58-124 (251)
339 2f9l_A RAB11B, member RAS onco 94.7 0.018 6.1E-07 48.1 3.1 24 52-75 5-28 (199)
340 3kjh_A CO dehydrogenase/acetyl 94.7 0.035 1.2E-06 48.0 5.1 33 55-87 3-35 (254)
341 1fzq_A ADP-ribosylation factor 94.7 0.03 1E-06 45.9 4.5 25 50-74 14-38 (181)
342 2zej_A Dardarin, leucine-rich 94.6 0.014 4.9E-07 48.0 2.4 21 54-74 4-24 (184)
343 4dzz_A Plasmid partitioning pr 94.6 0.03 1E-06 46.9 4.5 35 53-87 2-37 (206)
344 3tmk_A Thymidylate kinase; pho 94.6 0.087 3E-06 44.8 7.4 26 53-78 6-31 (216)
345 3tif_A Uncharacterized ABC tra 94.6 0.016 5.3E-07 50.2 2.7 23 53-75 32-54 (235)
346 4fcg_A Uncharacterized protein 94.6 0.032 1.1E-06 50.8 4.9 60 319-380 228-294 (328)
347 3f9v_A Minichromosome maintena 94.6 0.011 3.9E-07 58.4 2.0 49 28-76 294-351 (595)
348 2ffh_A Protein (FFH); SRP54, s 94.6 0.041 1.4E-06 51.8 5.7 36 51-86 97-132 (425)
349 2ce2_X GTPase HRAS; signaling 94.5 0.02 7E-07 45.6 3.1 22 54-75 5-26 (166)
350 2pcj_A ABC transporter, lipopr 94.5 0.016 5.6E-07 49.7 2.6 23 53-75 31-53 (224)
351 2z7x_B TOLL-like receptor 1, v 94.5 0.017 5.8E-07 56.0 3.1 56 320-378 45-104 (520)
352 2wjg_A FEOB, ferrous iron tran 94.5 0.024 8.3E-07 46.6 3.6 23 52-74 7-29 (188)
353 1ogq_A PGIP-2, polygalacturona 94.5 0.025 8.4E-07 51.1 3.8 60 319-380 100-166 (313)
354 3o6n_A APL1; leucine-rich repe 94.5 0.05 1.7E-06 50.6 6.0 60 319-380 92-157 (390)
355 3ug7_A Arsenical pump-driving 94.5 0.057 1.9E-06 49.6 6.3 39 49-87 23-61 (349)
356 4tmk_A Protein (thymidylate ki 94.5 0.063 2.2E-06 45.5 6.1 34 53-86 4-38 (213)
357 2fn4_A P23, RAS-related protei 94.5 0.034 1.1E-06 45.2 4.3 26 50-75 7-32 (181)
358 2ged_A SR-beta, signal recogni 94.4 0.024 8.1E-07 46.9 3.3 25 51-75 47-71 (193)
359 3ld9_A DTMP kinase, thymidylat 94.4 0.033 1.1E-06 47.6 4.3 28 51-78 20-47 (223)
360 1bif_A 6-phosphofructo-2-kinas 94.4 0.039 1.3E-06 53.0 5.2 30 51-80 38-67 (469)
361 3b85_A Phosphate starvation-in 94.4 0.016 5.4E-07 49.2 2.2 22 54-75 24-45 (208)
362 3fdi_A Uncharacterized protein 94.4 0.025 8.4E-07 47.6 3.4 25 53-77 7-31 (201)
363 2nzj_A GTP-binding protein REM 94.4 0.031 1E-06 45.2 3.9 23 52-74 4-26 (175)
364 2cbz_A Multidrug resistance-as 94.4 0.019 6.5E-07 49.8 2.7 23 53-75 32-54 (237)
365 3oaa_A ATP synthase subunit al 94.4 0.047 1.6E-06 52.0 5.5 80 53-140 163-264 (513)
366 2o6q_A Variable lymphocyte rec 94.4 0.061 2.1E-06 47.2 6.1 61 319-381 84-150 (270)
367 3con_A GTPase NRAS; structural 94.4 0.023 8E-07 46.8 3.1 23 53-75 22-44 (190)
368 3lv8_A DTMP kinase, thymidylat 94.3 0.069 2.4E-06 46.1 6.2 35 52-86 27-62 (236)
369 3j0a_A TOLL-like receptor 5; m 94.3 0.05 1.7E-06 56.3 6.3 43 336-378 63-111 (844)
370 2xot_A Amphoterin-induced prot 94.3 0.057 1.9E-06 49.8 6.0 43 338-380 128-179 (361)
371 1w36_D RECD, exodeoxyribonucle 94.3 0.13 4.4E-06 51.0 8.9 25 53-77 165-189 (608)
372 2id5_A Lingo-1, leucine rich r 94.3 0.053 1.8E-06 51.9 6.0 43 338-380 48-96 (477)
373 2o6q_A Variable lymphocyte rec 94.3 0.053 1.8E-06 47.6 5.6 60 319-380 60-125 (270)
374 2d2e_A SUFC protein; ABC-ATPas 94.3 0.024 8.2E-07 49.5 3.2 23 53-75 30-52 (250)
375 2qe7_A ATP synthase subunit al 94.3 0.041 1.4E-06 52.5 5.0 83 53-140 163-264 (502)
376 1b0u_A Histidine permease; ABC 94.3 0.02 6.8E-07 50.4 2.7 23 53-75 33-55 (262)
377 3gfo_A Cobalt import ATP-bindi 94.3 0.02 6.9E-07 50.8 2.7 23 53-75 35-57 (275)
378 3v9p_A DTMP kinase, thymidylat 94.3 0.047 1.6E-06 46.8 4.9 28 52-79 25-52 (227)
379 2z63_A TOLL-like receptor 4, v 94.3 0.061 2.1E-06 52.6 6.4 40 338-377 92-137 (570)
380 3rfs_A Internalin B, repeat mo 94.3 0.073 2.5E-06 46.8 6.4 61 319-381 132-198 (272)
381 2xot_A Amphoterin-induced prot 94.2 0.056 1.9E-06 49.8 5.8 60 319-380 87-152 (361)
382 3fkq_A NTRC-like two-domain pr 94.2 0.041 1.4E-06 51.1 4.9 39 49-87 140-179 (373)
383 3bfv_A CAPA1, CAPB2, membrane 94.2 0.082 2.8E-06 46.7 6.6 52 36-87 64-118 (271)
384 1mv5_A LMRA, multidrug resista 94.2 0.023 7.8E-07 49.4 2.9 23 52-74 28-50 (243)
385 2zu0_C Probable ATP-dependent 94.2 0.025 8.7E-07 49.9 3.2 23 53-75 47-69 (267)
386 2lkc_A Translation initiation 94.2 0.029 9.9E-07 45.5 3.4 24 51-74 7-30 (178)
387 3ea0_A ATPase, para family; al 94.2 0.063 2.2E-06 46.2 5.7 37 51-87 3-41 (245)
388 1ji0_A ABC transporter; ATP bi 94.2 0.022 7.5E-07 49.4 2.7 23 53-75 33-55 (240)
389 3mfy_A V-type ATP synthase alp 94.2 0.062 2.1E-06 51.9 5.9 48 53-106 228-275 (588)
390 1nrj_B SR-beta, signal recogni 94.2 0.029 1E-06 47.4 3.5 25 51-75 11-35 (218)
391 2qi9_C Vitamin B12 import ATP- 94.2 0.019 6.5E-07 50.1 2.3 25 53-77 27-51 (249)
392 1u8z_A RAS-related protein RAL 94.2 0.042 1.4E-06 43.8 4.2 23 52-74 4-26 (168)
393 2vp4_A Deoxynucleoside kinase; 94.2 0.021 7.1E-07 49.1 2.5 26 50-75 18-43 (230)
394 4g1u_C Hemin import ATP-bindin 94.2 0.022 7.4E-07 50.3 2.6 23 53-75 38-60 (266)
395 1pzn_A RAD51, DNA repair and r 94.2 0.034 1.2E-06 51.1 4.1 26 51-76 130-155 (349)
396 2ft3_A Biglycan; proteoglycan, 94.2 0.045 1.6E-06 49.6 4.9 60 319-380 216-280 (332)
397 1p9a_G Platelet glycoprotein I 94.1 0.062 2.1E-06 47.9 5.7 61 319-381 99-165 (290)
398 2v9p_A Replication protein E1; 94.1 0.028 9.5E-07 50.6 3.3 25 52-76 126-150 (305)
399 1c1y_A RAS-related protein RAP 94.1 0.028 9.7E-07 44.9 3.1 21 54-74 5-25 (167)
400 1m7b_A RND3/RHOE small GTP-bin 94.1 0.037 1.3E-06 45.4 3.9 24 51-74 6-29 (184)
401 1g6h_A High-affinity branched- 94.1 0.023 7.8E-07 49.9 2.7 23 53-75 34-56 (257)
402 2ff7_A Alpha-hemolysin translo 94.1 0.023 7.9E-07 49.5 2.7 23 53-75 36-58 (247)
403 1xeu_A Internalin C; cellular 94.1 0.041 1.4E-06 48.3 4.4 60 319-382 62-124 (263)
404 1kao_A RAP2A; GTP-binding prot 94.1 0.028 9.7E-07 44.8 3.1 22 53-74 4-25 (167)
405 1nij_A Hypothetical protein YJ 94.1 0.027 9.1E-07 51.1 3.2 25 51-75 3-27 (318)
406 2pze_A Cystic fibrosis transme 94.1 0.023 8E-07 48.9 2.7 24 53-76 35-58 (229)
407 2z80_A TOLL-like receptor 2, v 94.1 0.065 2.2E-06 49.1 5.9 60 319-380 51-116 (353)
408 1svi_A GTP-binding protein YSX 94.1 0.029 1E-06 46.4 3.2 25 50-74 21-45 (195)
409 2olj_A Amino acid ABC transpor 94.1 0.023 7.9E-07 50.0 2.7 23 53-75 51-73 (263)
410 3ihw_A Centg3; RAS, centaurin, 94.1 0.028 9.6E-07 46.3 3.1 24 51-74 19-42 (184)
411 1ky3_A GTP-binding protein YPT 94.1 0.038 1.3E-06 44.9 3.9 25 50-74 6-30 (182)
412 1z08_A RAS-related protein RAB 94.1 0.029 9.8E-07 45.1 3.1 23 52-74 6-28 (170)
413 2h92_A Cytidylate kinase; ross 94.1 0.026 8.8E-07 47.9 2.9 24 53-76 4-27 (219)
414 1p5z_B DCK, deoxycytidine kina 94.1 0.016 5.5E-07 51.0 1.6 27 51-77 23-49 (263)
415 2z81_A CD282 antigen, TOLL-lik 94.1 0.065 2.2E-06 52.2 6.2 59 319-379 49-113 (549)
416 2ck3_A ATP synthase subunit al 94.1 0.071 2.4E-06 51.0 6.1 85 53-140 163-272 (510)
417 1r8s_A ADP-ribosylation factor 94.1 0.03 1E-06 44.7 3.1 21 55-75 3-23 (164)
418 1sgw_A Putative ABC transporte 94.1 0.02 6.8E-07 48.7 2.1 23 53-75 36-58 (214)
419 2www_A Methylmalonic aciduria 94.0 0.057 1.9E-06 49.6 5.3 27 51-77 73-99 (349)
420 1ek0_A Protein (GTP-binding pr 94.0 0.03 1E-06 44.9 3.1 21 54-74 5-25 (170)
421 2gj8_A MNME, tRNA modification 94.0 0.027 9.2E-07 45.9 2.8 23 53-75 5-27 (172)
422 1z0j_A RAB-22, RAS-related pro 94.0 0.031 1.1E-06 44.9 3.1 23 53-75 7-29 (170)
423 3cmw_A Protein RECA, recombina 94.0 0.094 3.2E-06 57.6 7.6 36 52-87 732-767 (1706)
424 2ghi_A Transport protein; mult 94.0 0.025 8.6E-07 49.7 2.7 24 53-76 47-70 (260)
425 3gmt_A Adenylate kinase; ssgci 94.0 0.033 1.1E-06 47.8 3.4 24 53-76 9-32 (230)
426 2woj_A ATPase GET3; tail-ancho 94.0 0.1 3.5E-06 48.0 6.9 37 51-87 17-55 (354)
427 3q72_A GTP-binding protein RAD 94.0 0.028 9.5E-07 45.0 2.8 21 54-74 4-24 (166)
428 3v47_A TOLL-like receptor 5B a 94.0 0.06 2.1E-06 51.0 5.6 58 320-378 54-117 (455)
429 1vpl_A ABC transporter, ATP-bi 94.0 0.025 8.7E-07 49.5 2.7 23 53-75 42-64 (256)
430 3a79_B TLR6, VLRB.59, TOLL-lik 94.0 0.063 2.1E-06 52.7 5.8 60 320-381 52-117 (562)
431 3c5c_A RAS-like protein 12; GD 94.0 0.031 1.1E-06 46.1 3.1 23 52-74 21-43 (187)
432 2ixe_A Antigen peptide transpo 93.9 0.026 8.9E-07 49.9 2.7 23 53-75 46-68 (271)
433 3cio_A ETK, tyrosine-protein k 93.9 0.075 2.6E-06 47.7 5.8 52 36-87 86-140 (299)
434 1w8a_A SLIT protein; signaling 93.9 0.073 2.5E-06 44.1 5.4 57 319-377 77-139 (192)
435 1tq4_A IIGP1, interferon-induc 93.9 0.025 8.5E-07 53.2 2.7 24 51-74 68-91 (413)
436 1x6v_B Bifunctional 3'-phospho 93.9 0.043 1.5E-06 54.3 4.4 27 51-77 51-77 (630)
437 2cjw_A GTP-binding protein GEM 93.9 0.032 1.1E-06 46.3 3.1 23 52-74 6-28 (192)
438 3q85_A GTP-binding protein REM 93.9 0.042 1.4E-06 44.1 3.8 22 53-74 3-24 (169)
439 1dce_A Protein (RAB geranylger 93.9 0.042 1.4E-06 54.1 4.5 59 319-381 485-550 (567)
440 3tqf_A HPR(Ser) kinase; transf 93.9 0.036 1.2E-06 45.1 3.2 23 53-75 17-39 (181)
441 3lda_A DNA repair protein RAD5 93.9 0.06 2.1E-06 50.4 5.2 36 52-87 178-219 (400)
442 3def_A T7I23.11 protein; chlor 93.9 0.054 1.8E-06 47.5 4.6 35 40-74 24-58 (262)
443 3cwq_A Para family chromosome 93.9 0.067 2.3E-06 45.2 5.1 33 54-87 2-35 (209)
444 1r2q_A RAS-related protein RAB 93.9 0.034 1.2E-06 44.5 3.1 22 53-74 7-28 (170)
445 3cmu_A Protein RECA, recombina 93.9 0.14 4.7E-06 57.2 8.6 36 52-87 383-418 (2050)
446 3oja_B Anopheles plasmodium-re 93.9 0.072 2.5E-06 52.7 6.0 60 319-380 98-163 (597)
447 1m2o_B GTP-binding protein SAR 93.8 0.034 1.2E-06 46.0 3.1 22 53-74 24-45 (190)
448 2erx_A GTP-binding protein DI- 93.8 0.041 1.4E-06 44.1 3.6 22 53-74 4-25 (172)
449 3pqc_A Probable GTP-binding pr 93.8 0.033 1.1E-06 45.9 3.1 24 52-75 23-46 (195)
450 1g16_A RAS-related protein SEC 93.8 0.047 1.6E-06 43.7 3.9 22 53-74 4-25 (170)
451 2iwr_A Centaurin gamma 1; ANK 93.8 0.027 9.1E-07 45.8 2.4 23 52-74 7-29 (178)
452 1q57_A DNA primase/helicase; d 93.8 0.13 4.3E-06 49.9 7.6 52 52-110 242-294 (503)
453 2yz2_A Putative ABC transporte 93.8 0.028 9.7E-07 49.6 2.7 23 53-75 34-56 (266)
454 3zyj_A Leucine-rich repeat-con 93.8 0.095 3.3E-06 49.6 6.6 42 338-379 177-222 (440)
455 2z62_A TOLL-like receptor 4, v 93.8 0.11 3.9E-06 45.5 6.7 57 320-378 76-138 (276)
456 2r9v_A ATP synthase subunit al 93.8 0.038 1.3E-06 52.9 3.6 83 53-140 176-277 (515)
457 2ihy_A ABC transporter, ATP-bi 93.8 0.029 9.8E-07 49.9 2.7 24 53-76 48-71 (279)
458 1vg8_A RAS-related protein RAB 93.8 0.046 1.6E-06 45.6 3.9 25 51-75 7-31 (207)
459 1z0f_A RAB14, member RAS oncog 93.8 0.046 1.6E-06 44.2 3.8 25 51-75 14-38 (179)
460 3tw8_B RAS-related protein RAB 93.8 0.039 1.3E-06 44.8 3.3 25 50-74 7-31 (181)
461 2nq2_C Hypothetical ABC transp 93.8 0.029 9.9E-07 49.1 2.6 23 53-75 32-54 (253)
462 1wms_A RAB-9, RAB9, RAS-relate 93.7 0.041 1.4E-06 44.5 3.4 23 52-74 7-29 (177)
463 3zyi_A Leucine-rich repeat-con 93.7 0.07 2.4E-06 50.8 5.5 60 319-380 98-163 (452)
464 1upt_A ARL1, ADP-ribosylation 93.7 0.048 1.6E-06 43.8 3.8 23 52-74 7-29 (171)
465 3t5g_A GTP-binding protein RHE 93.7 0.039 1.3E-06 44.9 3.3 24 51-74 5-28 (181)
466 1moz_A ARL1, ADP-ribosylation 93.7 0.048 1.6E-06 44.4 3.8 25 50-74 16-40 (183)
467 3cbq_A GTP-binding protein REM 93.7 0.036 1.2E-06 46.1 3.1 23 51-73 22-44 (195)
468 2hxs_A RAB-26, RAS-related pro 93.7 0.056 1.9E-06 43.8 4.2 24 51-74 5-28 (178)
469 2c61_A A-type ATP synthase non 93.7 0.039 1.3E-06 52.4 3.5 83 53-139 153-258 (469)
470 1gwn_A RHO-related GTP-binding 93.7 0.049 1.7E-06 45.8 3.9 24 51-74 27-50 (205)
471 1h65_A Chloroplast outer envel 93.7 0.061 2.1E-06 47.4 4.7 25 50-74 37-61 (270)
472 1ozn_A Reticulon 4 receptor; N 93.7 0.1 3.5E-06 46.1 6.2 60 319-380 152-217 (285)
473 3sop_A Neuronal-specific septi 93.7 0.038 1.3E-06 48.8 3.3 23 54-76 4-26 (270)
474 3kkq_A RAS-related protein M-R 93.7 0.06 2E-06 43.9 4.4 25 51-75 17-41 (183)
475 1jr3_D DNA polymerase III, del 93.7 0.31 1.1E-05 44.4 9.6 95 51-166 17-115 (343)
476 2bme_A RAB4A, RAS-related prot 93.7 0.051 1.8E-06 44.4 3.9 24 51-74 9-32 (186)
477 4dsu_A GTPase KRAS, isoform 2B 93.6 0.039 1.3E-06 45.2 3.1 22 53-74 5-26 (189)
478 2cxx_A Probable GTP-binding pr 93.6 0.031 1.1E-06 45.9 2.6 21 54-74 3-23 (190)
479 3la6_A Tyrosine-protein kinase 93.6 0.14 4.9E-06 45.5 7.0 52 36-87 74-128 (286)
480 4ezg_A Putative uncharacterize 93.6 0.049 1.7E-06 45.4 3.8 59 320-380 88-153 (197)
481 3v47_A TOLL-like receptor 5B a 93.6 0.091 3.1E-06 49.8 6.1 61 319-381 322-388 (455)
482 3bc1_A RAS-related protein RAB 93.6 0.052 1.8E-06 44.5 3.9 24 51-74 10-33 (195)
483 2z7x_B TOLL-like receptor 1, v 93.6 0.066 2.3E-06 51.8 5.2 60 320-381 21-86 (520)
484 2oze_A ORF delta'; para, walke 93.6 0.049 1.7E-06 48.7 3.9 48 37-87 22-72 (298)
485 3o6n_A APL1; leucine-rich repe 93.6 0.092 3.1E-06 48.8 5.9 60 319-380 116-181 (390)
486 1p9r_A General secretion pathw 93.6 0.13 4.3E-06 48.5 6.8 87 51-146 166-252 (418)
487 4dkx_A RAS-related protein RAB 93.6 0.04 1.4E-06 46.9 3.1 21 54-74 15-35 (216)
488 2y8e_A RAB-protein 6, GH09086P 93.5 0.041 1.4E-06 44.5 3.1 22 53-74 15-36 (179)
489 3cmw_A Protein RECA, recombina 93.5 0.12 4.2E-06 56.7 7.5 36 52-87 383-418 (1706)
490 3bwd_D RAC-like GTP-binding pr 93.5 0.042 1.4E-06 44.7 3.1 22 53-74 9-30 (182)
491 3ch4_B Pmkase, phosphomevalona 93.5 0.065 2.2E-06 44.9 4.3 27 50-76 9-35 (202)
492 2atv_A RERG, RAS-like estrogen 93.5 0.041 1.4E-06 45.6 3.1 24 52-75 28-51 (196)
493 3nh6_A ATP-binding cassette SU 93.5 0.031 1.1E-06 50.3 2.5 22 53-74 81-102 (306)
494 2a9k_A RAS-related protein RAL 93.5 0.042 1.4E-06 44.8 3.1 23 52-74 18-40 (187)
495 1zj6_A ADP-ribosylation factor 93.5 0.07 2.4E-06 43.8 4.5 24 51-74 15-38 (187)
496 1lw7_A Transcriptional regulat 93.5 0.046 1.6E-06 50.6 3.7 26 52-77 170-195 (365)
497 3zyi_A Leucine-rich repeat-con 93.5 0.091 3.1E-06 49.9 5.9 59 320-380 75-139 (452)
498 4bas_A ADP-ribosylation factor 93.5 0.049 1.7E-06 45.1 3.5 25 50-74 15-39 (199)
499 3dz8_A RAS-related protein RAB 93.5 0.045 1.5E-06 45.2 3.3 24 52-75 23-46 (191)
500 1h6t_A Internalin B; cell adhe 93.5 0.054 1.8E-06 48.3 4.0 58 320-382 134-196 (291)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.4e-42 Score=344.94 Aligned_cols=266 Identities=16% Similarity=0.154 Sum_probs=209.6
Q ss_pred cccchhHHHHHHhhcCC-CCCeEEEEEEcCCCchHHHHHHHHHH----HhhCCCCceEEEeeccccccCCCChHHHHHHH
Q 044214 32 VGVESTVEEIESLLGVE-SKGVYALGIWGIGGIGKTTIARAIFD----KISGDFDGSCFLENVREESQIPGGLSCLRQKL 106 (385)
Q Consensus 32 vGR~~~l~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~----~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~l 106 (385)
|||+.++++|.++|..+ .+..++|+|+|||||||||||+++|+ +++.+|++++|++ +++... ++...++..+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~--~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP--KSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST--THHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC--CCHHHHHHHH
Confidence 59999999999999753 34689999999999999999999996 6889999999996 433211 3688999999
Q ss_pred HHHHhCCCC-----CC------chHHHHHHHhCCc-eEEEEEeCCCChhhhhHhhccCCCCCCCcEEEEEeccHHHHhhc
Q 044214 107 LSNLLKDKN-----VM------PYIDLNFRRLGHM-KVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQVLRNW 174 (385)
Q Consensus 107 l~~l~~~~~-----~~------~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~~~~ 174 (385)
+.+++.... .. .....+++.|+++ |+||||||||+.+++ .+.. .+||+||||||++.++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 999986532 11 2478899999996 999999999998876 2222 2799999999999888766
Q ss_pred c-c--------------------eecccCCCCCCchHHHHHHHHHhCCCccchhHH-------hHHHHHHHhh----hcc
Q 044214 175 R-V--------------------NAFKRNHPDVGNEKLSSNVMKYAQGVPLALKVL-------VWESAISKLQ----RIL 222 (385)
Q Consensus 175 ~-~--------------------~~~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~-------~w~~~l~~l~----~~~ 222 (385)
+ . .+|.... .+...+++++|+++|+|+||||+++ .|... +.+. ...
T Consensus 282 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~-~~l~~~l~~~~ 359 (549)
T 2a5y_B 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKM-AQLNNKLESRG 359 (549)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHH-HHHHHHHHHHC
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHH-HHhHHHhhccc
Confidence 3 1 2232221 2456778999999999999999999 56543 3332 224
Q ss_pred CcccchhhhhccccCchhhhhhhh-----------hccccCCCccHHHHHHHHHHc--CCch-----------hhhHHHh
Q 044214 223 HPSILEVLKISYDSLEDKEKNIFL-----------DVACFFQGEHVDPVMKFFNAS--GFYP-----------EIRISVL 278 (385)
Q Consensus 223 ~~~~~~~l~~sy~~L~~~~k~~~~-----------~la~fp~~~~~~~l~~~~~~~--g~~~-----------~~~l~~L 278 (385)
...+..++.+||+.||++.|.||+ |||+||++++.. +.+|+++ |++. .+++++|
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L 437 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRL 437 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHT
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHH
Confidence 577999999999999999999999 999999986666 7899999 6663 2379999
Q ss_pred hcCCceeEecC---CcEEeCHHHHHHHHHHHhhcc
Q 044214 279 VDKPLIAICSY---KKIRMRDLLQELGGEIVRKES 310 (385)
Q Consensus 279 ~~~sLi~~~~~---~~~~mH~lv~~~a~~~~~~e~ 310 (385)
+++|||+.... ++|+|||+||+||++++.+++
T Consensus 438 ~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 438 SKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 99999997643 369999999999998876654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.3e-39 Score=346.18 Aligned_cols=277 Identities=19% Similarity=0.238 Sum_probs=218.6
Q ss_pred CCCCCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHH---hhCCCCceE-EEeeccccccCCCC
Q 044214 23 RPRDNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDK---ISGDFDGSC-FLENVREESQIPGG 98 (385)
Q Consensus 23 ~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~-w~~~~~~~~~~~~~ 98 (385)
.+|..++.||||++++++|.++|...++.+++|+|+||||+||||||++++++ ...+|...+ |+. ++.... ..
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~-~~~~~~--~~ 194 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS-IGKQDK--SG 194 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE-CCSCCH--HH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE-ECCcCc--hH
Confidence 34667788999999999999999766677899999999999999999999985 456676666 554 443211 33
Q ss_pred hHHHHHHHHHHHhCCCCC---C-----chHHHHHHHhCCc--eEEEEEeCCCChhhhhHhhccCCCCCCCcEEEEEeccH
Q 044214 99 LSCLRQKLLSNLLKDKNV---M-----PYIDLNFRRLGHM--KVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNK 168 (385)
Q Consensus 99 ~~~l~~~ll~~l~~~~~~---~-----~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~ 168 (385)
....+..++..+...... . .....++..+.++ |+||||||+|+..+|..+ ++||+||||||++
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESST
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCH
Confidence 445566677776654321 1 5666777778776 999999999998877664 5789999999999
Q ss_pred HHHhhcc-c----------------eeccc--CCCCCCchHHHHHHHHHhCCCccchhHH---------hHHHHHHHhhh
Q 044214 169 QVLRNWR-V----------------NAFKR--NHPDVGNEKLSSNVMKYAQGVPLALKVL---------VWESAISKLQR 220 (385)
Q Consensus 169 ~~~~~~~-~----------------~~~~~--~~~~~~~~~~~~~i~~~~~GlPLal~~~---------~w~~~l~~l~~ 220 (385)
.++..+. . ..|.. ....+...+.+++|+++|+|+||||+++ .|...++.+..
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~ 347 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQN 347 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHS
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhh
Confidence 8874321 1 11111 1223456678999999999999999999 78888888765
Q ss_pred ccC-----------cccchhhhhccccCchhhhhhhhhccccCCC--ccHHHHHHHHHHcCCchhhhHHHhhcCCceeEe
Q 044214 221 ILH-----------PSILEVLKISYDSLEDKEKNIFLDVACFFQG--EHVDPVMKFFNASGFYPEIRISVLVDKPLIAIC 287 (385)
Q Consensus 221 ~~~-----------~~~~~~l~~sy~~L~~~~k~~~~~la~fp~~--~~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~~~ 287 (385)
... ..+..++.+||+.|++++|.||++||+||++ ++.+.++.+|.+++..++.++++|+++|||+..
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~ 427 (1249)
T 3sfz_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCN 427 (1249)
T ss_dssp CCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEE
T ss_pred hhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEe
Confidence 332 3488999999999999999999999999987 788999999988877888999999999999987
Q ss_pred cCCc---EEeCHHHHHHHHHHHhhc
Q 044214 288 SYKK---IRMRDLLQELGGEIVRKE 309 (385)
Q Consensus 288 ~~~~---~~mH~lv~~~a~~~~~~e 309 (385)
.++. |+||++||+||++.+.++
T Consensus 428 ~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 428 RNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred cCCCceEEEecHHHHHHHHhhhhHH
Confidence 6664 999999999999987766
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=3.8e-36 Score=301.99 Aligned_cols=274 Identities=20% Similarity=0.221 Sum_probs=204.3
Q ss_pred CCCCCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh---hCCCC-ceEEEeeccccccCCCC
Q 044214 23 RPRDNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI---SGDFD-GSCFLENVREESQIPGG 98 (385)
Q Consensus 23 ~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~---~~~f~-~~~w~~~~~~~~~~~~~ 98 (385)
..|..++.||||+.++++|.++|...+++.++|+|+||||+||||||.+++++. +.+|+ .++|++ ++.... ..
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~~--~~ 194 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQDK--SG 194 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCCH--HH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCch--HH
Confidence 345677889999999999999998655678999999999999999999999743 67895 577776 332211 11
Q ss_pred hHHHHHHHHHHHhCCC------CCC--chHHHHHHHhCC--ceEEEEEeCCCChhhhhHhhccCCCCCCCcEEEEEeccH
Q 044214 99 LSCLRQKLLSNLLKDK------NVM--PYIDLNFRRLGH--MKVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNK 168 (385)
Q Consensus 99 ~~~l~~~ll~~l~~~~------~~~--~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~ 168 (385)
+...+..+...+.... ... .....+...+.+ +++||||||+|+...++.+ ++|++||||||+.
T Consensus 195 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 195 LLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCG
T ss_pred HHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCc
Confidence 2222233344444211 111 455666776665 7899999999997766543 4689999999999
Q ss_pred HHHhhccc-----------------eecccC--CCCCCchHHHHHHHHHhCCCccchhHH---------hHHHHHHHhhh
Q 044214 169 QVLRNWRV-----------------NAFKRN--HPDVGNEKLSSNVMKYAQGVPLALKVL---------VWESAISKLQR 220 (385)
Q Consensus 169 ~~~~~~~~-----------------~~~~~~--~~~~~~~~~~~~i~~~~~GlPLal~~~---------~w~~~l~~l~~ 220 (385)
.++..+.. ..|... .+.....+.+.+|+++|+|+||||+++ .|...++.+..
T Consensus 268 ~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~ 347 (591)
T 1z6t_A 268 SVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQN 347 (591)
T ss_dssp GGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHS
T ss_pred HHHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 87654321 111110 111233567899999999999999998 59888888764
Q ss_pred ccC-----------cccchhhhhccccCchhhhhhhhhccccCCC--ccHHHHHHHHHHcCCchhhhHHHhhcCCceeEe
Q 044214 221 ILH-----------PSILEVLKISYDSLEDKEKNIFLDVACFFQG--EHVDPVMKFFNASGFYPEIRISVLVDKPLIAIC 287 (385)
Q Consensus 221 ~~~-----------~~~~~~l~~sy~~L~~~~k~~~~~la~fp~~--~~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~~~ 287 (385)
... .++..++..||+.||++.|.||.++|+||.+ ++.+.+..+|..++.....++++|+++|||+..
T Consensus 348 ~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~ 427 (591)
T 1z6t_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCD 427 (591)
T ss_dssp CCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEE
T ss_pred hHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEe
Confidence 321 3578899999999999999999999999876 788899999987655677889999999999976
Q ss_pred cCC---cEEeCHHHHHHHHHHH
Q 044214 288 SYK---KIRMRDLLQELGGEIV 306 (385)
Q Consensus 288 ~~~---~~~mH~lv~~~a~~~~ 306 (385)
.++ +|+||+++|+++++..
T Consensus 428 ~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 428 RNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp EETTEEEEECCHHHHHHHHHHT
T ss_pred cCCCccEEEEcHHHHHHHHhhh
Confidence 433 6999999999999873
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.4e-34 Score=292.30 Aligned_cols=258 Identities=16% Similarity=0.120 Sum_probs=187.1
Q ss_pred CCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHH--HhhCCCCc-eEEEeeccccccCCCChHHHHHH
Q 044214 29 NQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFD--KISGDFDG-SCFLENVREESQIPGGLSCLRQK 105 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~--~~~~~f~~-~~w~~~~~~~~~~~~~~~~l~~~ 105 (385)
+..|||+.++++|.++|... +..++|+|+||||+||||||+++++ +++.+|+. ++|++ ++. . .+...++..
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-Vs~---~-~d~~~IL~~ 201 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKN---C-NSPETVLEM 201 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-CCC---S-SSHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-eCC---C-CCHHHHHHH
Confidence 34599999999999999742 3478999999999999999999997 57888997 67776 433 3 666677777
Q ss_pred HHHHHhCCC------CC----C-----chHHHHHHHh---CCceEEEEEeCCCChhhhhHhhccCCCCCCCcEEEEEecc
Q 044214 106 LLSNLLKDK------NV----M-----PYIDLNFRRL---GHMKVLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRN 167 (385)
Q Consensus 106 ll~~l~~~~------~~----~-----~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~ 167 (385)
++..+.... .+ . .....+++.| .++|+||||||+|+.+.|+.+. +||+||||||+
T Consensus 202 Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd 274 (1221)
T 1vt4_I 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSC
T ss_pred HHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccC
Confidence 666432211 01 0 3345666655 6899999999999998888762 68999999999
Q ss_pred HHHHhhccc------e------ecccCC--------CCCCchHHHHHHHHHhCCCccchhHH--hHHHH---HHHhhhcc
Q 044214 168 KQVLRNWRV------N------AFKRNH--------PDVGNEKLSSNVMKYAQGVPLALKVL--VWESA---ISKLQRIL 222 (385)
Q Consensus 168 ~~~~~~~~~------~------~~~~~~--------~~~~~~~~~~~i~~~~~GlPLal~~~--~w~~~---l~~l~~~~ 222 (385)
+.++..+.. . .+.... ......++.. +.|+|+||||+++ ..... .+......
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~---eICgGLPLALkLaGs~Lr~k~~s~eeW~~~~ 351 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---EVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHH---HHCCCCHHHHHHHHHHHHHSCSSHHHHHHCS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHH---HHhCCCHHHHHHHHHHHhCCCCCHHHHhcCC
Confidence 988753221 1 111000 0001122333 3499999999998 11000 01111123
Q ss_pred CcccchhhhhccccCchhh-hhhhhhccccCCC--ccHHHHHHHHHHcCC-chhhhHHHhhcCCceeEec-CCcEEeCHH
Q 044214 223 HPSILEVLKISYDSLEDKE-KNIFLDVACFFQG--EHVDPVMKFFNASGF-YPEIRISVLVDKPLIAICS-YKKIRMRDL 297 (385)
Q Consensus 223 ~~~~~~~l~~sy~~L~~~~-k~~~~~la~fp~~--~~~~~l~~~~~~~g~-~~~~~l~~L~~~sLi~~~~-~~~~~mH~l 297 (385)
...+..++.+||+.||+++ |.||++||+||++ ++.+.+..+|.++|. .++.++++|+++|||+... .++|+|||+
T Consensus 352 ~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDL 431 (1221)
T 1vt4_I 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431 (1221)
T ss_dssp CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCH
T ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHH
Confidence 4679999999999999999 9999999999986 677889999998863 3677899999999999863 567999999
Q ss_pred HHHHH
Q 044214 298 LQELG 302 (385)
Q Consensus 298 v~~~a 302 (385)
+++++
T Consensus 432 llELr 436 (1221)
T 1vt4_I 432 YLELK 436 (1221)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99855
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.71 E-value=1.5e-17 Score=155.41 Aligned_cols=264 Identities=15% Similarity=0.127 Sum_probs=156.0
Q ss_pred CCCCCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccc--cCCCChH
Q 044214 23 RPRDNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREES--QIPGGLS 100 (385)
Q Consensus 23 ~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~--~~~~~~~ 100 (385)
.++..++.|+||+.++++|.+++..+ +++.|+|++|+|||+|+++++++.. .+|+. ..... ....+..
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILID-CRELYAERGHITRE 75 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE-HHHHHHTTTCBCHH
T ss_pred CCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE-eecccccccCCCHH
Confidence 45667788999999999999998742 5899999999999999999998751 56665 22211 0002445
Q ss_pred HHHHHHHHHHhC-----------------CCC----CC-chHHHHHHHhCC-ceEEEEEeCCCChh--------hhhHhh
Q 044214 101 CLRQKLLSNLLK-----------------DKN----VM-PYIDLNFRRLGH-MKVLIVFDDVTCFS--------QLESLM 149 (385)
Q Consensus 101 ~l~~~ll~~l~~-----------------~~~----~~-~~~~~l~~~l~~-k~~LlVlDdv~~~~--------~~~~l~ 149 (385)
.++..+...+.. ..+ .. +....+.+.... ++++||+||++... .+..++
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 555555544321 000 01 233344444432 38999999996532 222222
Q ss_pred ccCCCCCCCcEEEEEeccHHHHhhc----c-----------c------------eeccc---CCCCCCchHHHHHHHHHh
Q 044214 150 GSLDWLTPVSRIILTTRNKQVLRNW----R-----------V------------NAFKR---NHPDVGNEKLSSNVMKYA 199 (385)
Q Consensus 150 ~~~~~~~~gs~ilvTtR~~~~~~~~----~-----------~------------~~~~~---~~~~~~~~~~~~~i~~~~ 199 (385)
..+....++.++|+|++........ . . ..+.. ........+.+.++++.|
T Consensus 156 ~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~t 235 (350)
T 2qen_A 156 AYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELL 235 (350)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 2221112477899998876432211 0 0 00000 011112356788999999
Q ss_pred CCCccchhHH---hHH-----HHHHHhhhccCcccchhhhhccccC---chhhhhhhhhccccCCCccHHHHHHHHHHc-
Q 044214 200 QGVPLALKVL---VWE-----SAISKLQRILHPSILEVLKISYDSL---EDKEKNIFLDVACFFQGEHVDPVMKFFNAS- 267 (385)
Q Consensus 200 ~GlPLal~~~---~w~-----~~l~~l~~~~~~~~~~~l~~sy~~L---~~~~k~~~~~la~fp~~~~~~~l~~~~~~~- 267 (385)
+|+|+++..+ .|. .....+. +.+...+...+..+ ++..+.++..+|+ . ..+...+...+...
T Consensus 236 gG~P~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~-g-~~~~~~l~~~~~~~~ 309 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGDFGRAMKRTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL-G-YNRWSLIRDYLAVKG 309 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHHHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-T-CCSHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhccccHhHHHHHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh-C-CCCHHHHHHHHHHHh
Confidence 9999999876 122 1111110 11222222233344 7888999999988 3 35666666655322
Q ss_pred -CCc---hhhhHHHhhcCCceeEecCCcEE-eCHHHHHHHH
Q 044214 268 -GFY---PEIRISVLVDKPLIAICSYKKIR-MRDLLQELGG 303 (385)
Q Consensus 268 -g~~---~~~~l~~L~~~sLi~~~~~~~~~-mH~lv~~~a~ 303 (385)
+.. ...+++.|.+.+||... ++.|. .|++++++.+
T Consensus 310 ~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 310 TKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 232 35679999999999987 45554 5788888754
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.68 E-value=5e-16 Score=145.35 Aligned_cols=262 Identities=15% Similarity=0.158 Sum_probs=147.9
Q ss_pred CCCCCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccc--cCCCChH
Q 044214 23 RPRDNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREES--QIPGGLS 100 (385)
Q Consensus 23 ~~~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~--~~~~~~~ 100 (385)
.++..++.|+||+++++.|.+ +.. +++.|+|++|+|||+|+++++++... ..+|+. ..... .. .+..
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~-~~~~~~~~~-~~~~ 75 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNL---PYIYLD-LRKFEERNY-ISYK 75 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTC---CEEEEE-GGGGTTCSC-CCHH
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCC---CEEEEE-chhhccccC-CCHH
Confidence 455667889999999999999 763 58999999999999999999988753 256665 32210 00 2233
Q ss_pred HHHHHHHHHHh-------------CC-------CC---------CCchHHHHHHHhCC---ceEEEEEeCCCCh-----h
Q 044214 101 CLRQKLLSNLL-------------KD-------KN---------VMPYIDLNFRRLGH---MKVLIVFDDVTCF-----S 143 (385)
Q Consensus 101 ~l~~~ll~~l~-------------~~-------~~---------~~~~~~~l~~~l~~---k~~LlVlDdv~~~-----~ 143 (385)
.+...+...+. .. .. .......+.+.+.. ++++|||||++.. .
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch
Confidence 44444333221 00 00 01122333333321 4999999999542 2
Q ss_pred hhhHhhccCCCCCCCcEEEEEeccHHHHhhc----c-----------c----------------eecccCCCCCCchHHH
Q 044214 144 QLESLMGSLDWLTPVSRIILTTRNKQVLRNW----R-----------V----------------NAFKRNHPDVGNEKLS 192 (385)
Q Consensus 144 ~~~~l~~~~~~~~~gs~ilvTtR~~~~~~~~----~-----------~----------------~~~~~~~~~~~~~~~~ 192 (385)
++..++..+....++.++|+|++........ . . ..+...... ... .
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~-~ 232 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADID--FKD-Y 232 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCC--CCC-H
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCC--CCc-H
Confidence 2323332222112467899999976532211 0 0 001000000 011 2
Q ss_pred HHHHHHhCCCccchhHH---hHH-----HHHHHhhhccCcccchhhh-hcc--ccCchhhhhhhhhccccCCCccHHHHH
Q 044214 193 SNVMKYAQGVPLALKVL---VWE-----SAISKLQRILHPSILEVLK-ISY--DSLEDKEKNIFLDVACFFQGEHVDPVM 261 (385)
Q Consensus 193 ~~i~~~~~GlPLal~~~---~w~-----~~l~~l~~~~~~~~~~~l~-~sy--~~L~~~~k~~~~~la~fp~~~~~~~l~ 261 (385)
..+++.|+|+|+++..+ .|. .....+.......+..-+. ..+ ..|++..+.++..+|+ .. +...+.
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g~--~~~~l~ 309 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK-CG--KWSDVK 309 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-CB--CHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-CC--CHHHHH
Confidence 78999999999999876 121 1111110000000111111 111 1688999999999998 32 566665
Q ss_pred HHHH-HcC--Cc---hhhhHHHhhcCCceeEecCCcEE-eCHHHHHHH
Q 044214 262 KFFN-ASG--FY---PEIRISVLVDKPLIAICSYKKIR-MRDLLQELG 302 (385)
Q Consensus 262 ~~~~-~~g--~~---~~~~l~~L~~~sLi~~~~~~~~~-mH~lv~~~a 302 (385)
.... ..| .. ...+++.|.+.+||...+ +.|+ .|++++++.
T Consensus 310 ~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 310 RALELEEGIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 4432 223 22 356799999999999874 5555 688988874
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.66 E-value=1e-15 Score=146.29 Aligned_cols=271 Identities=13% Similarity=0.087 Sum_probs=156.2
Q ss_pred CCCCCCCCccccchhHHHHHHhh-cC--CC--CCeEEEEE--EcCCCchHHHHHHHHHHHhhCC-----CC-ceEEEeec
Q 044214 23 RPRDNKNQLVGVESTVEEIESLL-GV--ES--KGVYALGI--WGIGGIGKTTIARAIFDKISGD-----FD-GSCFLENV 89 (385)
Q Consensus 23 ~~~~~~~~~vGR~~~l~~l~~~L-~~--~~--~~~~vv~I--~G~gGiGKTtLA~~~~~~~~~~-----f~-~~~w~~~~ 89 (385)
.+...++.|+||+.++++|.+++ .. .. .....+.| +|++|+|||+||+++++..... +. ..+|+. .
T Consensus 16 ~~~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~-~ 94 (412)
T 1w5s_A 16 DENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN-A 94 (412)
T ss_dssp STTCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE-G
T ss_pred CCccCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE-C
Confidence 44455688999999999999988 42 11 23456667 9999999999999999876542 23 234554 2
Q ss_pred cccccCCCChHHHHHHHHHHHhCCCCC--C---chHHHHHHHhC--CceEEEEEeCCCCh--------hhhhHhhccCCC
Q 044214 90 REESQIPGGLSCLRQKLLSNLLKDKNV--M---PYIDLNFRRLG--HMKVLIVFDDVTCF--------SQLESLMGSLDW 154 (385)
Q Consensus 90 ~~~~~~~~~~~~l~~~ll~~l~~~~~~--~---~~~~~l~~~l~--~k~~LlVlDdv~~~--------~~~~~l~~~~~~ 154 (385)
. .. .+...++..++..++...+. . +....+.+.+. +++++|||||++.. +.+..+...+..
T Consensus 95 ~---~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~ 170 (412)
T 1w5s_A 95 F---NA-PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEE 170 (412)
T ss_dssp G---GC-CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHH
T ss_pred C---CC-CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHh
Confidence 2 22 66778888888888654321 1 33455555554 67999999999653 334333332211
Q ss_pred C---C--CCcEEEEEeccHHHHhhcc-------------c-----------eec----cc-CCCCCCchHHHHHHHHHhC
Q 044214 155 L---T--PVSRIILTTRNKQVLRNWR-------------V-----------NAF----KR-NHPDVGNEKLSSNVMKYAQ 200 (385)
Q Consensus 155 ~---~--~gs~ilvTtR~~~~~~~~~-------------~-----------~~~----~~-~~~~~~~~~~~~~i~~~~~ 200 (385)
. + .+..+|+||+...+..... . ..+ .. ........+.+..+++.|+
T Consensus 171 ~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 171 IPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYG 250 (412)
T ss_dssp SCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHC
T ss_pred cccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 1 2 3455787887654322111 0 011 00 0111233567888999999
Q ss_pred ------CCccchhHH---hHHHHHHH---------hhhccCccc-chhhhhccccCchhhhhhhhhccccC----CCccH
Q 044214 201 ------GVPLALKVL---VWESAISK---------LQRILHPSI-LEVLKISYDSLEDKEKNIFLDVACFF----QGEHV 257 (385)
Q Consensus 201 ------GlPLal~~~---~w~~~l~~---------l~~~~~~~~-~~~l~~sy~~L~~~~k~~~~~la~fp----~~~~~ 257 (385)
|+|..+..+ .+...... +........ ...+..++..||+..+.++..++.+. ..++.
T Consensus 251 ~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~ 330 (412)
T 1w5s_A 251 EDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINA 330 (412)
T ss_dssp GGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccH
Confidence 999755544 11111000 000000111 34456677899999999999888753 22555
Q ss_pred HHHHHHH-----HHcCCc------hhhhHHHhhcCCceeEec-----CCcEEeCHHH
Q 044214 258 DPVMKFF-----NASGFY------PEIRISVLVDKPLIAICS-----YKKIRMRDLL 298 (385)
Q Consensus 258 ~~l~~~~-----~~~g~~------~~~~l~~L~~~sLi~~~~-----~~~~~mH~lv 298 (385)
..+...+ ...|.. ...+++.|.+.+||.... .|+|++|.+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 331 GLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 5443322 222321 246799999999998653 3445555443
No 8
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.49 E-value=7.9e-13 Score=125.14 Aligned_cols=280 Identities=13% Similarity=0.102 Sum_probs=162.7
Q ss_pred CCCCCCccccchhHHHHHHhhcC----CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC-CceEEEeeccccccCCCCh
Q 044214 25 RDNKNQLVGVESTVEEIESLLGV----ESKGVYALGIWGIGGIGKTTIARAIFDKISGDF-DGSCFLENVREESQIPGGL 99 (385)
Q Consensus 25 ~~~~~~~vGR~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~w~~~~~~~~~~~~~~ 99 (385)
...++.++||+.+++++.+++.. ..+..+.+.|+|++|+||||||+.+++...... ...+++. . ... .+.
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~-~---~~~-~~~ 87 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN-G---FIY-RNF 87 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE-T---TTC-CSH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe-C---ccC-CCH
Confidence 34457899999999999998874 222334899999999999999999999876553 3344554 2 222 556
Q ss_pred HHHHHHHHHHHhCCCCCC-----chHHHHHHHh--CCceEEEEEeCCCC--hhhhhHhhccCCCCC----CCcEEEEEec
Q 044214 100 SCLRQKLLSNLLKDKNVM-----PYIDLNFRRL--GHMKVLIVFDDVTC--FSQLESLMGSLDWLT----PVSRIILTTR 166 (385)
Q Consensus 100 ~~l~~~ll~~l~~~~~~~-----~~~~~l~~~l--~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~----~gs~ilvTtR 166 (385)
..++..++..++...... .....+...+ .+++.+||||+++. ...+..+...+.... .+..||++|+
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~ 167 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGH 167 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEES
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEEC
Confidence 778888887775533211 3334444444 35689999999964 344555554443211 3667788877
Q ss_pred cHHHHhhccc--------------------------eeccc-CCCCCCchHHHHHHHHHh---------CCCccchhHH-
Q 044214 167 NKQVLRNWRV--------------------------NAFKR-NHPDVGNEKLSSNVMKYA---------QGVPLALKVL- 209 (385)
Q Consensus 167 ~~~~~~~~~~--------------------------~~~~~-~~~~~~~~~~~~~i~~~~---------~GlPLal~~~- 209 (385)
.......... ..+.. .......++..+.+++.+ +|.|..+..+
T Consensus 168 ~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l 247 (389)
T 1fnn_A 168 NDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDIL 247 (389)
T ss_dssp STHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHH
T ss_pred CchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 6533222110 11110 011123456778899999 7887655433
Q ss_pred --hHHHHHHHh-hhccCcc--------cchhhhhccccCchhhhhhhhhccccC---C--CccHHHHHHHHHH----cCC
Q 044214 210 --VWESAISKL-QRILHPS--------ILEVLKISYDSLEDKEKNIFLDVACFF---Q--GEHVDPVMKFFNA----SGF 269 (385)
Q Consensus 210 --~w~~~l~~l-~~~~~~~--------~~~~l~~sy~~L~~~~k~~~~~la~fp---~--~~~~~~l~~~~~~----~g~ 269 (385)
.|......- .....+. ....+...+..|+++.+.++..++.+. . .+....+...+.. .|.
T Consensus 248 ~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 327 (389)
T 1fnn_A 248 YRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGE 327 (389)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCC
Confidence 221111000 0000011 123344456789999998888887654 2 3555555544433 222
Q ss_pred c------hhhhHHHhhcCCceeEecC-------CcE-------EeCHHHHHHHHHHHhhc
Q 044214 270 Y------PEIRISVLVDKPLIAICSY-------KKI-------RMRDLLQELGGEIVRKE 309 (385)
Q Consensus 270 ~------~~~~l~~L~~~sLi~~~~~-------~~~-------~mH~lv~~~a~~~~~~e 309 (385)
. ...+++.|.++++|..... |++ ..|+++..+...+..+|
T Consensus 328 ~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 328 RPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp CCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 1 2357999999999997533 322 24566666665555443
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=6.3e-13 Score=125.72 Aligned_cols=250 Identities=16% Similarity=0.088 Sum_probs=145.1
Q ss_pred CCCccccchhHHHHHHhhcC--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC--------CCceEEEeeccccccCCC
Q 044214 28 KNQLVGVESTVEEIESLLGV--ESKGVYALGIWGIGGIGKTTIARAIFDKISGD--------FDGSCFLENVREESQIPG 97 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~w~~~~~~~~~~~~ 97 (385)
++.|+||+.+++++.+++.. .....+.+.|+|++|+|||+||+.+++.+... ....+|+. .... .
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~~~~----~ 93 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-CREV----G 93 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-HHHH----C
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-CccC----C
Confidence 37899999999999987763 23445689999999999999999999876332 23344554 2222 4
Q ss_pred -ChHHHHHHHHHHHhCCCCC------CchHHHHHHHhCCceEEEEEeCCCChhh-------hhHhhccCCCCCCCcEEEE
Q 044214 98 -GLSCLRQKLLSNLLKDKNV------MPYIDLNFRRLGHMKVLIVFDDVTCFSQ-------LESLMGSLDWLTPVSRIIL 163 (385)
Q Consensus 98 -~~~~l~~~ll~~l~~~~~~------~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------~~~l~~~~~~~~~gs~ilv 163 (385)
+...++..++..+.+.... ......+.+.+..++.+|||||++.... +..+.... .+..+|+
T Consensus 94 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~ 169 (384)
T 2qby_B 94 GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIM 169 (384)
T ss_dssp SCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEE
Confidence 6677888888877433221 1456677777877666999999965432 33333322 5778888
Q ss_pred EeccHHH--------Hhhccc-----------------eecccC-CCCCCchHHHHHHHHHhC---CCcc-chhHH--hH
Q 044214 164 TTRNKQV--------LRNWRV-----------------NAFKRN-HPDVGNEKLSSNVMKYAQ---GVPL-ALKVL--VW 211 (385)
Q Consensus 164 TtR~~~~--------~~~~~~-----------------~~~~~~-~~~~~~~~~~~~i~~~~~---GlPL-al~~~--~w 211 (385)
||+.... ....+. ..+... ......++..+.+++.++ |.|. ++..+ .+
T Consensus 170 ~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~ 249 (384)
T 2qby_B 170 ISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAA 249 (384)
T ss_dssp ECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 8886521 122111 111100 111233566778888888 8776 33333 11
Q ss_pred HHHHHHhhhccCcc--------cchhhhhccccCchhhhhhhhhccccCCCccH-HHHHHHHHHcCCc------hhhhHH
Q 044214 212 ESAISKLQRILHPS--------ILEVLKISYDSLEDKEKNIFLDVACFFQGEHV-DPVMKFFNASGFY------PEIRIS 276 (385)
Q Consensus 212 ~~~l~~l~~~~~~~--------~~~~l~~sy~~L~~~~k~~~~~la~fp~~~~~-~~l~~~~~~~g~~------~~~~l~ 276 (385)
.... .-.....+. ....+..+++.|++.++..+..++....+-+. +....+....|.. ...+++
T Consensus 250 ~~a~-~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~ 328 (384)
T 2qby_B 250 QLAS-GGGIIRKEHVDKAIVDYEQERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIIS 328 (384)
T ss_dssp HHTT-SSSCCCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHhc-CCCccCHHHHHHHHHHHhcchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 1000 000000011 11335556788999988888877761110111 2222333333321 245689
Q ss_pred HhhcCCceeEe
Q 044214 277 VLVDKPLIAIC 287 (385)
Q Consensus 277 ~L~~~sLi~~~ 287 (385)
.|.++|+|+..
T Consensus 329 ~L~~~gli~~~ 339 (384)
T 2qby_B 329 ELDMFGIVKIR 339 (384)
T ss_dssp HHHHTTSEEEE
T ss_pred HHHhCCCEEEE
Confidence 99999999964
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=1.6e-12 Score=122.76 Aligned_cols=258 Identities=16% Similarity=0.098 Sum_probs=145.6
Q ss_pred CCCCCCCCccccchhHHHHHHhhcCC--CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC---CceEEEeeccccccCCC
Q 044214 23 RPRDNKNQLVGVESTVEEIESLLGVE--SKGVYALGIWGIGGIGKTTIARAIFDKISGDF---DGSCFLENVREESQIPG 97 (385)
Q Consensus 23 ~~~~~~~~~vGR~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---~~~~w~~~~~~~~~~~~ 97 (385)
.+...++.|+||+.+++.+.+++... ......+.|+|++|+||||||+.+++.....+ ...+|+. .... .
T Consensus 14 ~~~~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~~~~----~ 88 (386)
T 2qby_A 14 LPDYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-TRQI----D 88 (386)
T ss_dssp SSSCCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-HHHH----C
T ss_pred CCccCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-CCCC----C
Confidence 34455688999999999999988742 34456899999999999999999999775543 2344554 2222 4
Q ss_pred ChHHHHHHHHHHHhCCCCCC-----chHHHHHHHhC--CceEEEEEeCCCC------hhhhhHhhccCCC-CCCCcEEEE
Q 044214 98 GLSCLRQKLLSNLLKDKNVM-----PYIDLNFRRLG--HMKVLIVFDDVTC------FSQLESLMGSLDW-LTPVSRIIL 163 (385)
Q Consensus 98 ~~~~l~~~ll~~l~~~~~~~-----~~~~~l~~~l~--~k~~LlVlDdv~~------~~~~~~l~~~~~~-~~~gs~ilv 163 (385)
....+...++..++...... +....+.+.+. +++.+||||+++. ...+..+...+.. ...+..+|+
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~ 168 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIG 168 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEE
Confidence 55566666666654332211 33444555543 4589999999964 2334444433311 134556777
Q ss_pred EeccHHHHhh--------cc--c----------------eecccC-CCCCCchHHHHHHHHHhC---CCccchhHH---h
Q 044214 164 TTRNKQVLRN--------WR--V----------------NAFKRN-HPDVGNEKLSSNVMKYAQ---GVPLALKVL---V 210 (385)
Q Consensus 164 TtR~~~~~~~--------~~--~----------------~~~~~~-~~~~~~~~~~~~i~~~~~---GlPLal~~~---~ 210 (385)
||+....... .. . ..+... .......+..+.+++.++ |.|..+..+ .
T Consensus 169 ~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a 248 (386)
T 2qby_A 169 ITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVS 248 (386)
T ss_dssp EESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred EECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8876532211 11 1 000000 112233566677888887 888744433 1
Q ss_pred HHHHHHHhhhccC---cc--------cchhhhhccccCchhhhhhhhhccccCC-C---ccHHHH----HHHHHHcCCc-
Q 044214 211 WESAISKLQRILH---PS--------ILEVLKISYDSLEDKEKNIFLDVACFFQ-G---EHVDPV----MKFFNASGFY- 270 (385)
Q Consensus 211 w~~~l~~l~~~~~---~~--------~~~~l~~sy~~L~~~~k~~~~~la~fp~-~---~~~~~l----~~~~~~~g~~- 270 (385)
+.... ...... +. ....+..++..+++..+..+..++.+.+ + +....+ ..+...-|..
T Consensus 249 ~~~a~--~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~ 326 (386)
T 2qby_A 249 GEIAE--RMKDTKVKEEYVYMAKEEIERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEA 326 (386)
T ss_dssp HHHHH--HTTCSSCCHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHH--hcCCCccCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCC
Confidence 11110 000000 11 1234556678899988888887775321 1 444333 2222222222
Q ss_pred -----hhhhHHHhhcCCceeEe
Q 044214 271 -----PEIRISVLVDKPLIAIC 287 (385)
Q Consensus 271 -----~~~~l~~L~~~sLi~~~ 287 (385)
...+++.|.+.|+|+..
T Consensus 327 ~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 327 VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEE
Confidence 34579999999999864
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.42 E-value=3e-12 Score=120.97 Aligned_cols=258 Identities=14% Similarity=0.112 Sum_probs=146.0
Q ss_pred CCCCCCccccchhHHHHHHhhcCC--CCCeEEEEEEcCCCchHHHHHHHHHHHhhCC------CCceEEEeeccccccCC
Q 044214 25 RDNKNQLVGVESTVEEIESLLGVE--SKGVYALGIWGIGGIGKTTIARAIFDKISGD------FDGSCFLENVREESQIP 96 (385)
Q Consensus 25 ~~~~~~~vGR~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~w~~~~~~~~~~~ 96 (385)
...++.|+||+.+++++..++... ....+.+.|+|++|+|||++|+.+++..... -...+|+. . ...
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~-~---~~~- 89 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN-A---RHR- 89 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE-T---TTS-
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE-C---CcC-
Confidence 344588999999999999988532 3456689999999999999999999876432 12234444 2 222
Q ss_pred CChHHHHHHHHHHHhCCCCCC-----chHHHHHHHh--CCceEEEEEeCCCChh-------hhhHhhccCCCC--CCCcE
Q 044214 97 GGLSCLRQKLLSNLLKDKNVM-----PYIDLNFRRL--GHMKVLIVFDDVTCFS-------QLESLMGSLDWL--TPVSR 160 (385)
Q Consensus 97 ~~~~~l~~~ll~~l~~~~~~~-----~~~~~l~~~l--~~k~~LlVlDdv~~~~-------~~~~l~~~~~~~--~~gs~ 160 (385)
.+...++..++..++...... +....+.+.+ .+++.+||||+++... .+..+....... ..+..
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~ 169 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVS 169 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CE
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEE
Confidence 567788888888886543311 3345566666 3468999999997543 223333322211 34556
Q ss_pred EEEEeccHH--------HHhhccc------------------eeccc-CCCCCCchHHHHHHHHHhC---CCccch-hHH
Q 044214 161 IILTTRNKQ--------VLRNWRV------------------NAFKR-NHPDVGNEKLSSNVMKYAQ---GVPLAL-KVL 209 (385)
Q Consensus 161 ilvTtR~~~--------~~~~~~~------------------~~~~~-~~~~~~~~~~~~~i~~~~~---GlPLal-~~~ 209 (385)
+|+||+... +...... ..+.. .......++..+.+++.++ |.|-.+ .++
T Consensus 170 ~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 170 LVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp EEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred EEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 777776552 2222211 11110 0111223456677888888 888433 333
Q ss_pred --hHHHHHHHh-hhccCcc--------cchhhhhccccCchhhhhhhhhccccCCC---ccHHHHHHHH----HHcCCc-
Q 044214 210 --VWESAISKL-QRILHPS--------ILEVLKISYDSLEDKEKNIFLDVACFFQG---EHVDPVMKFF----NASGFY- 270 (385)
Q Consensus 210 --~w~~~l~~l-~~~~~~~--------~~~~l~~sy~~L~~~~k~~~~~la~fp~~---~~~~~l~~~~----~~~g~~- 270 (385)
.|......- .....+. ....+.-++..|+++.+..+..++....+ +....+.+.. ...|..
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEH 329 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCC
Confidence 111110000 0000011 12234456788999988888777643222 4444333332 222321
Q ss_pred -----hhhhHHHhhcCCceeEe
Q 044214 271 -----PEIRISVLVDKPLIAIC 287 (385)
Q Consensus 271 -----~~~~l~~L~~~sLi~~~ 287 (385)
...+++.|...|+++..
T Consensus 330 ~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 330 VTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHhCCCeEEE
Confidence 34579999999999974
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.16 E-value=1.7e-10 Score=101.32 Aligned_cols=132 Identities=16% Similarity=0.140 Sum_probs=76.2
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHH
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQK 105 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ 105 (385)
.....++||+..++.+..++..+. ..+.+.|+|++|+||||||+.+++.....+....+-+ ...... ..
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~ 88 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC---------GVCDNC-RE 88 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC---------SCSHHH-HH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC---------cccHHH-HH
Confidence 344679999999999999987432 2347899999999999999999987755432110000 000000 00
Q ss_pred HHHHHhC-----CCCCC---chHHHHHHHh-----CCceEEEEEeCCCC--hhhhhHhhccCCCCCCCcEEEEEeccH
Q 044214 106 LLSNLLK-----DKNVM---PYIDLNFRRL-----GHMKVLIVFDDVTC--FSQLESLMGSLDWLTPVSRIILTTRNK 168 (385)
Q Consensus 106 ll~~l~~-----~~~~~---~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ilvTtR~~ 168 (385)
+...... ..... .....+.+.+ .+++.+||+||++. ...+..+...+.....+..+|+||+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~ 166 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 166 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCG
T ss_pred HhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 0000000 00000 1111222221 34679999999954 455666665554445677888888764
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.10 E-value=5.8e-10 Score=96.46 Aligned_cols=127 Identities=19% Similarity=0.301 Sum_probs=76.7
Q ss_pred CCCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe-eccccccCCCChHHHH
Q 044214 25 RDNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE-NVREESQIPGGLSCLR 103 (385)
Q Consensus 25 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~-~~~~~~~~~~~~~~l~ 103 (385)
|.....++||+..++.+.+++... ..+.+.|+|++|+|||++|+.+++.+........++. +.. .. .....+.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~ 86 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS---DE-RGIDVVR 86 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT---CT-TCHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc---cc-cChHHHH
Confidence 344567999999999999999853 3334899999999999999999987644322222222 111 11 2222222
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHhCCceEEEEEeCCCCh--hhhhHhhccCCCCCCCcEEEEEeccH
Q 044214 104 QKLLSNLLKDKNVMPYIDLNFRRLGHMKVLIVFDDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK 168 (385)
Q Consensus 104 ~~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~ 168 (385)
..+ ........ ...+++.+||+||++.. ...+.+...+.....+..+|+||+..
T Consensus 87 ~~~-~~~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 87 HKI-KEFARTAP----------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp HHH-HHHHTSCC----------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred HHH-HHHhcccC----------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 222 11111100 11257899999999643 34444544443334577888888765
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.97 E-value=2.2e-09 Score=98.68 Aligned_cols=164 Identities=14% Similarity=0.209 Sum_probs=92.4
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC-C-ceEEEeeccccccCCCChHHHH
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDF-D-GSCFLENVREESQIPGGLSCLR 103 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~-~~~w~~~~~~~~~~~~~~~~l~ 103 (385)
.....++|++..++.+.+++..+ ..+.+.|+|++|+|||++|+.+++.+.... . ..+++. . +.. .... ..
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~---~~~-~~~~-~i 89 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDG--NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN-A---SDD-RGID-VV 89 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSC--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC-T---TSC-CSHH-HH
T ss_pred CCHHHHHCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec-C---ccc-cChH-HH
Confidence 34467999999999999999843 333489999999999999999999764322 1 122222 1 111 2222 22
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHh-CCceEEEEEeCCCC--hhhhhHhhccCCCCCCCcEEEEEeccHH-----HHhhcc
Q 044214 104 QKLLSNLLKDKNVMPYIDLNFRRL-GHMKVLIVFDDVTC--FSQLESLMGSLDWLTPVSRIILTTRNKQ-----VLRNWR 175 (385)
Q Consensus 104 ~~ll~~l~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ilvTtR~~~-----~~~~~~ 175 (385)
..++..+.... ..+ .+++.++|+||++. ....+.+...+.....++.+|+||+... +...+.
T Consensus 90 ~~~~~~~~~~~----------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 90 RNQIKHFAQKK----------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp HTHHHHHHHBC----------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHHHHhcc----------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce
Confidence 22222221000 011 34689999999974 3344444444333345677888876542 122221
Q ss_pred ceeccc---------------CCCCCCchHHHHHHHHHhCCCccchh
Q 044214 176 VNAFKR---------------NHPDVGNEKLSSNVMKYAQGVPLALK 207 (385)
Q Consensus 176 ~~~~~~---------------~~~~~~~~~~~~~i~~~~~GlPLal~ 207 (385)
...|.. .......++.+..+++.++|.|..+.
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~ 206 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAI 206 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 111110 01111234567788999999995433
No 15
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.79 E-value=1.2e-08 Score=93.75 Aligned_cols=125 Identities=20% Similarity=0.283 Sum_probs=73.5
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCc--eEEEeeccccccCCCChHHHH
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDG--SCFLENVREESQIPGGLSCLR 103 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~w~~~~~~~~~~~~~~~~l~ 103 (385)
..-..++|++..++.+.+++..+ ..+.+.|+|++|+|||++|+.+++.+...... .+.+. .... .+.. ..
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~-~~~~----~~~~-~~ 93 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN-ASDE----RGIN-VI 93 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE-TTCH----HHHH-TT
T ss_pred CCHHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee-cccc----CchH-HH
Confidence 34467999999999999998843 33348999999999999999999976433211 22222 1110 0000 00
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHhCCceEEEEEeCCCCh--hhhhHhhccCCCCCCCcEEEEEeccH
Q 044214 104 QKLLSNLLKDKNVMPYIDLNFRRLGHMKVLIVFDDVTCF--SQLESLMGSLDWLTPVSRIILTTRNK 168 (385)
Q Consensus 104 ~~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~ 168 (385)
...+....... ....+++.++|+||++.. .....+...+.....++++|+||...
T Consensus 94 ~~~~~~~~~~~----------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 94 REKVKEFARTK----------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp HHHHHHHHHSC----------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred HHHHHHHHhhC----------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCc
Confidence 11111110000 011256789999999743 44555554444334577888888654
No 16
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.78 E-value=2.1e-08 Score=84.30 Aligned_cols=50 Identities=18% Similarity=0.314 Sum_probs=42.1
Q ss_pred CCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 27 NKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 27 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.-..++||+++++++.+.+.. ...+.+.|+|++|+|||++|+.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 346799999999999999884 33456889999999999999999987643
No 17
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.77 E-value=3e-09 Score=97.93 Aligned_cols=52 Identities=23% Similarity=0.406 Sum_probs=41.6
Q ss_pred CCCCCccccchhHHHHHHhhcC---CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 26 DNKNQLVGVESTVEEIESLLGV---ESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..-+.|+|++..++.+..++.. .......+.|+|++|+|||++|+.+++...
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999998887752 112345788999999999999999998774
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.73 E-value=4.5e-08 Score=89.61 Aligned_cols=124 Identities=16% Similarity=0.252 Sum_probs=74.4
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC-CCc-eEEEeeccccccCCCChHHHH
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGD-FDG-SCFLENVREESQIPGGLSCLR 103 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~-~~w~~~~~~~~~~~~~~~~l~ 103 (385)
..-.+++|++..++.+.+++..+ ..+.+.++|++|+|||++|+.+++.+... +.. .+.+. ....... ..+....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~~~~-~~~~~~~ 89 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDERGI-DVVRHKI 89 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTSTTCT-TTSSHHH
T ss_pred CCHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-CccccCh-HHHHHHH
Confidence 33467999999999999998853 33348999999999999999999976332 211 12222 1111010 1111111
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHh-CCceEEEEEeCCCC--hhhhhHhhccCCCCCCCcEEEEEeccH
Q 044214 104 QKLLSNLLKDKNVMPYIDLNFRRL-GHMKVLIVFDDVTC--FSQLESLMGSLDWLTPVSRIILTTRNK 168 (385)
Q Consensus 104 ~~ll~~l~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ilvTtR~~ 168 (385)
...... ..+ .+++.++|+|+++. ......+...+.....+..+|+||...
T Consensus 90 ~~~~~~---------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 90 KEFART---------------APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (319)
T ss_dssp HHHHHS---------------CCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCG
T ss_pred HHHHhc---------------CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 111100 001 25678999999964 344555666555445677788877654
No 19
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.69 E-value=1.1e-07 Score=79.66 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=42.0
Q ss_pred CCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 27 NKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 27 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.-..++||+.+++.+.+.+.. ...+.+.|+|++|+|||++|+.+++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 346799999999999999874 33456789999999999999999997744
No 20
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.67 E-value=1.5e-07 Score=88.24 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=42.0
Q ss_pred CCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 27 NKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 27 ~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.-..++|++..++.+.+.+..+. ..+.+.|+|++|+|||++|+.+++.+..
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred chhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34669999999999999987432 2357889999999999999999987643
No 21
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.65 E-value=1.7e-07 Score=85.27 Aligned_cols=108 Identities=12% Similarity=0.088 Sum_probs=72.1
Q ss_pred CccccchhHHHHHHhhcC--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC-----Cc--eEEEeeccccccCCCChH
Q 044214 30 QLVGVESTVEEIESLLGV--ESKGVYALGIWGIGGIGKTTIARAIFDKISGDF-----DG--SCFLENVREESQIPGGLS 100 (385)
Q Consensus 30 ~~vGR~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~--~~w~~~~~~~~~~~~~~~ 100 (385)
.+.||+++++++...|.. ..+....+.|+|++|+|||++++.+++++.... +. .+.+. .. .. .+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN-c~---~~-~t~~ 95 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID-AL---EL-AGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE-TT---CC-C--H
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe-cc---cc-CCHH
Confidence 388999999999887763 234567889999999999999999999875322 11 23333 21 22 5566
Q ss_pred HHHHHHHHHHhCCCCCC----chHHHHHHHh---CCceEEEEEeCCCCh
Q 044214 101 CLRQKLLSNLLKDKNVM----PYIDLNFRRL---GHMKVLIVFDDVTCF 142 (385)
Q Consensus 101 ~l~~~ll~~l~~~~~~~----~~~~~l~~~l---~~k~~LlVlDdv~~~ 142 (385)
.+...|++++.+..... .....+...+ .+++++++||+++..
T Consensus 96 ~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 96 ALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSS
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHh
Confidence 78888888886543211 2233333333 457899999999754
No 22
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.63 E-value=1.2e-07 Score=87.67 Aligned_cols=53 Identities=25% Similarity=0.369 Sum_probs=42.7
Q ss_pred CCCCccccchhHHHHHHhhcCC---CCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 27 NKNQLVGVESTVEEIESLLGVE---SKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 27 ~~~~~vGR~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
.-+.++|++..++.+..++... ......|.|+|++|+|||++|+.+++.....
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~ 82 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN 82 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 4567999999999999888631 3344568999999999999999999876443
No 23
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.55 E-value=4e-07 Score=84.90 Aligned_cols=70 Identities=24% Similarity=0.351 Sum_probs=50.0
Q ss_pred HhHHHHHHHHHHHHhhccCCCCCCCCCCccccchhHHHHHHhhcC----------CCCCeEEEEEEcCCCchHHHHHHHH
Q 044214 3 ESELINEVVNHILKRLDEVFRPRDNKNQLVGVESTVEEIESLLGV----------ESKGVYALGIWGIGGIGKTTIARAI 72 (385)
Q Consensus 3 e~~~i~~i~~~v~~~l~~~~~~~~~~~~~vGR~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~ 72 (385)
+..+++.|..++..+ .++..-..++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+.+
T Consensus 63 ~~~~~~~i~~~i~~~-----~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 63 EPKMIELIMNEIMDH-----GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CHHHHHHHHHHTBCC-----SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHH
T ss_pred ChHHHHHHHhhcccC-----CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHH
Confidence 344555555554332 3344557799999999999887642 1133567899999999999999999
Q ss_pred HHHhh
Q 044214 73 FDKIS 77 (385)
Q Consensus 73 ~~~~~ 77 (385)
++...
T Consensus 138 a~~~~ 142 (357)
T 3d8b_A 138 ASQSG 142 (357)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 98763
No 24
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.50 E-value=5e-07 Score=83.89 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=41.8
Q ss_pred CCCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 25 RDNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 25 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
|..-..++|++..++.+..++..+. ...+.|+|++|+||||+|+.+++.+.
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3345679999999999999998532 23389999999999999999998753
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.46 E-value=2.9e-06 Score=76.85 Aligned_cols=68 Identities=22% Similarity=0.302 Sum_probs=49.2
Q ss_pred HHHHHHHHhhccCCCCCCCCCCccccchhHHHHHHhhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 9 EVVNHILKRLDEVFRPRDNKNQLVGVESTVEEIESLLGV----------ESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 9 ~i~~~v~~~l~~~~~~~~~~~~~vGR~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
++++.+.+.+... .++..-..++|.+..++.+.+.+.. -....+.+.|+|++|+|||++|+.+++...
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 2 KLVQLILDEIVEG-GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CHHHHHHTTTBCC-SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHhccC-CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3455555555442 3445557899999999999887632 012346789999999999999999998764
No 26
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.45 E-value=1.6e-07 Score=82.10 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=42.3
Q ss_pred CCCCCccccc---hhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 26 DNKNQLVGVE---STVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 26 ~~~~~~vGR~---~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
..-+.|+|++ ..++.+..+... +..+.+.|+|++|+|||+||+.+++........+.|+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG--DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT--CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3446788743 556667666653 24567899999999999999999997765544556665
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.42 E-value=7.2e-07 Score=80.33 Aligned_cols=56 Identities=23% Similarity=0.412 Sum_probs=43.8
Q ss_pred CCCCCCCCccccchhHHHHHHhhcCC-----------CCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 23 RPRDNKNQLVGVESTVEEIESLLGVE-----------SKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 23 ~~~~~~~~~vGR~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.|...-..++|.+..+++|.+.+... ....+.+.|+|++|+|||+||+.+++....
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~ 77 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA 77 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 44455678999999999998877421 133456899999999999999999987643
No 28
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.42 E-value=5.5e-07 Score=72.50 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=36.0
Q ss_pred CccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 30 QLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 30 ~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999988775322223357899999999999999998854
No 29
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.38 E-value=2.4e-06 Score=78.45 Aligned_cols=56 Identities=20% Similarity=0.343 Sum_probs=43.3
Q ss_pred CCCCCCCCccccchhHHHHHHhhc----------CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 23 RPRDNKNQLVGVESTVEEIESLLG----------VESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 23 ~~~~~~~~~vGR~~~l~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.|...-..++|.+..++.|.+.+. ......+-+.|+|++|+|||+||+.+++....
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~ 77 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 77 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC
Confidence 344455789999999999998772 12223467899999999999999999997643
No 30
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.35 E-value=7.5e-07 Score=85.38 Aligned_cols=124 Identities=13% Similarity=0.155 Sum_probs=69.1
Q ss_pred CCcc-ccchhH--HHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHH
Q 044214 29 NQLV-GVESTV--EEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQK 105 (385)
Q Consensus 29 ~~~v-GR~~~l--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ 105 (385)
+.|+ |..... ..+......... ...+.|+|++|+||||||+.+++.+...++..-++. .+...+...
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~---------v~~~~~~~~ 174 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY---------ITSEKFLND 174 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEE---------EEHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEE---------eeHHHHHHH
Confidence 4566 654433 344444443222 567899999999999999999998765543322222 111223334
Q ss_pred HHHHHhCCCCCCchHHHHHHHhCCceEEEEEeCCCCh----hhhhHhhccCCC-CCCCcEEEEEecc
Q 044214 106 LLSNLLKDKNVMPYIDLNFRRLGHMKVLIVFDDVTCF----SQLESLMGSLDW-LTPVSRIILTTRN 167 (385)
Q Consensus 106 ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~ilvTtR~ 167 (385)
+...+... ....+...+..++-+|++||++.. ...+.++..+.. ...|..||+||.+
T Consensus 175 ~~~~~~~~-----~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 175 LVDSMKEG-----KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHHHHHTT-----CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHHHHHcc-----cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 44433321 223444555546779999999532 223333322210 1346778888875
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.31 E-value=1.4e-06 Score=79.36 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=38.2
Q ss_pred CccccchhHHHHHHhhcC-------------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 30 QLVGVESTVEEIESLLGV-------------ESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 30 ~~vGR~~~l~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.++|.+...+.+.+.+.. .......+.|+|++|+|||++|+.+++.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 489999999888876541 1234457899999999999999999987643
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.30 E-value=1.4e-06 Score=72.76 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=63.6
Q ss_pred CCccc----cchhHHHHHHhhcCCC-CCeEEEEEEcCCCchHHHHHHHHHHHhh-CCCCceEEEeeccccccCCCChHHH
Q 044214 29 NQLVG----VESTVEEIESLLGVES-KGVYALGIWGIGGIGKTTIARAIFDKIS-GDFDGSCFLENVREESQIPGGLSCL 102 (385)
Q Consensus 29 ~~~vG----R~~~l~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~w~~~~~~~~~~~~~~~~l 102 (385)
+.|++ .+..++.+.+++..-. .....+.|+|++|+||||||+.+++.+. ..-..++++. ..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~-----------~~~~ 78 (180)
T 3ec2_A 10 DTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD-----------TKDL 78 (180)
T ss_dssp SSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE-----------HHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE-----------HHHH
Confidence 44554 4445555555554311 2346899999999999999999999764 2222233433 2233
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHhCCceEEEEEeCCCC--hhh-----hhHhhccCCCCCCCcEEEEEecc
Q 044214 103 RQKLLSNLLKDKNVMPYIDLNFRRLGHMKVLIVFDDVTC--FSQ-----LESLMGSLDWLTPVSRIILTTRN 167 (385)
Q Consensus 103 ~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~-----~~~l~~~~~~~~~gs~ilvTtR~ 167 (385)
...+.......... .+.+.+. ++-+|||||++. .+. +..++.... ..|..+|+||..
T Consensus 79 ~~~~~~~~~~~~~~-----~~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~--~~~~~ii~tsn~ 142 (180)
T 3ec2_A 79 IFRLKHLMDEGKDT-----KFLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRY--NNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHHHHHTCCS-----HHHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHH--HTTCEEEEECCC
T ss_pred HHHHHHHhcCchHH-----HHHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH--HcCCCEEEEcCC
Confidence 33333332222111 1222222 456899999962 222 222222211 246678888864
No 33
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.28 E-value=6.9e-06 Score=78.81 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=41.9
Q ss_pred CCCCCCCCccccchhHHHHHHhhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 23 RPRDNKNQLVGVESTVEEIESLLGV----------ESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 23 ~~~~~~~~~vGR~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.|+..-..++|.+...+.|.+.+.. .....+.|.|+|++|+|||+||+.+++..
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 3444557799999999999887621 11234678999999999999999999976
No 34
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.27 E-value=3.7e-06 Score=78.23 Aligned_cols=54 Identities=20% Similarity=0.368 Sum_probs=41.3
Q ss_pred CCCCCCCccccchhHHHHHHhhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 24 PRDNKNQLVGVESTVEEIESLLGV----------ESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 24 ~~~~~~~~vGR~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
++..-..++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+.+++...
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 344457799999999999887621 112235688999999999999999999874
No 35
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.27 E-value=1.8e-06 Score=79.35 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=73.9
Q ss_pred CCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHH
Q 044214 26 DNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQK 105 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ 105 (385)
..-++++|.+..++.+.+++..+. ...++.++|++|+|||++|+.+++.+.. ..+.+. . +. .... ....
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~---~~~~i~-~---~~--~~~~-~i~~ 91 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNA---DMMFVN-G---SD--CKID-FVRG 91 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTE---EEEEEE-T---TT--CCHH-HHHT
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCC---CEEEEc-c---cc--cCHH-HHHH
Confidence 345779999999999999998432 3457888999999999999999987632 122332 1 11 2222 2222
Q ss_pred HHHHHhCCCCCCchHHHHHHHhCCceEEEEEeCCCChh---hhhHhhccCCCCCCCcEEEEEeccH
Q 044214 106 LLSNLLKDKNVMPYIDLNFRRLGHMKVLIVFDDVTCFS---QLESLMGSLDWLTPVSRIILTTRNK 168 (385)
Q Consensus 106 ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~ilvTtR~~ 168 (385)
.+....... ...+++.++++|+++... ....+...+.....+.++|+||...
T Consensus 92 ~~~~~~~~~-----------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~ 146 (324)
T 3u61_B 92 PLTNFASAA-----------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNI 146 (324)
T ss_dssp HHHHHHHBC-----------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSG
T ss_pred HHHHHHhhc-----------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 222211110 012477899999998654 3444444333223456788887654
No 36
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.24 E-value=5.4e-06 Score=73.45 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=39.4
Q ss_pred CCCCccccchhHHHHHHhhc---CC-------CCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 27 NKNQLVGVESTVEEIESLLG---VE-------SKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 27 ~~~~~vGR~~~l~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.-.+++|.+...+.+.+++. .. ....+.+.|+|++|+|||++|+.+++....
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~ 65 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV 65 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34679999988888876543 11 123456889999999999999999997653
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.23 E-value=1.8e-05 Score=70.60 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=38.4
Q ss_pred CCCccccchhHHHHHH-------hhcC-CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 28 KNQLVGVESTVEEIES-------LLGV-ESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~-------~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.+.++|.+..++.+.. .+.. .....+.+.|+|++|+|||+||+.+++...
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3568999888776666 2321 244577899999999999999999999754
No 38
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.22 E-value=3e-05 Score=71.02 Aligned_cols=53 Identities=19% Similarity=0.333 Sum_probs=40.9
Q ss_pred CCCCCCCccccchhHHHHHHhhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 24 PRDNKNQLVGVESTVEEIESLLGV----------ESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 24 ~~~~~~~~vGR~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
|...-.+++|.++..+.|.+.+.. .....+.|.|+|++|+|||+||+.+++..
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 344557799999988888876521 11234679999999999999999999976
No 39
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.21 E-value=3e-06 Score=72.12 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=41.5
Q ss_pred CCCCccccch----hHHHHHHhhcCCCC--CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 27 NKNQLVGVES----TVEEIESLLGVESK--GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 27 ~~~~~vGR~~----~l~~l~~~L~~~~~--~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.-+.|++.+. .++.+.+++..... ..+.+.|+|.+|+|||+||+.+++........++++.
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3456776553 34455555553221 1267899999999999999999998766555566664
No 40
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.19 E-value=6.1e-06 Score=77.07 Aligned_cols=52 Identities=23% Similarity=0.224 Sum_probs=39.9
Q ss_pred CCCccccchhHHHH---HHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 28 KNQLVGVESTVEEI---ESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 28 ~~~~vGR~~~l~~l---~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
.+.|+|++...+.+ ...+..+....+.+.|+|++|+|||++|+.+++.+...
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 45799999887764 44455433334689999999999999999999988644
No 41
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.19 E-value=8e-06 Score=77.00 Aligned_cols=53 Identities=17% Similarity=0.264 Sum_probs=41.1
Q ss_pred CCCCCCccccchhHHHHHHhhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 25 RDNKNQLVGVESTVEEIESLLGV----------ESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 25 ~~~~~~~vGR~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+..-..++|.+..++.|.+++.. .....+.+.|+|.+|+|||+||+.+++...
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 33446799999999999987721 012246789999999999999999998754
No 42
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.17 E-value=7.2e-06 Score=74.48 Aligned_cols=54 Identities=24% Similarity=0.355 Sum_probs=41.7
Q ss_pred CCCCCCCccccchhHHHHHHhhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 24 PRDNKNQLVGVESTVEEIESLLGV-----------ESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 24 ~~~~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
|...-..++|.+..+++|.+++.. +-...+.+.|+|++|+|||+||+.+++...
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 334446799999998888877642 123456789999999999999999998764
No 43
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=1.2e-05 Score=74.61 Aligned_cols=48 Identities=27% Similarity=0.271 Sum_probs=39.5
Q ss_pred CCCCccccchhHHHHHHhh-cCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 27 NKNQLVGVESTVEEIESLL-GVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 27 ~~~~~vGR~~~l~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.-..++|.+..++.+.+++ ..+. ... +.|+|++|+||||+|+.+++.+
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 3467999999999999998 5322 233 8999999999999999999865
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.14 E-value=2.8e-06 Score=81.41 Aligned_cols=53 Identities=25% Similarity=0.421 Sum_probs=42.5
Q ss_pred CCCCCCccccchhH---HHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 25 RDNKNQLVGVESTV---EEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 25 ~~~~~~~vGR~~~l---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
|..-..++|.+..+ ..|...+.. +..+.+.|+|++|+||||||+.+++.....
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~--~~~~~vLL~GppGtGKTtlAr~ia~~~~~~ 77 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYANAD 77 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHH--TCCCEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHc--CCCcEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 34457799999888 678887773 344678999999999999999999976543
No 45
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.14 E-value=7e-06 Score=75.33 Aligned_cols=126 Identities=17% Similarity=0.151 Sum_probs=66.0
Q ss_pred CCCCCCcc-ccch--hHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHH
Q 044214 25 RDNKNQLV-GVES--TVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSC 101 (385)
Q Consensus 25 ~~~~~~~v-GR~~--~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~ 101 (385)
...-+.|+ |... ....+......+......+.|+|++|+|||+||+.+++.....-...+++. ...
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-----------~~~ 75 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-----------ADD 75 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-----------HHH
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-----------HHH
Confidence 33445676 5443 334555555543324567899999999999999999997744322233443 112
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHhCCceEEEEEeCCCChh----hhhHhhccCCC-CCCCcEEEEEecc
Q 044214 102 LRQKLLSNLLKDKNVMPYIDLNFRRLGHMKVLIVFDDVTCFS----QLESLMGSLDW-LTPVSRIILTTRN 167 (385)
Q Consensus 102 l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~ilvTtR~ 167 (385)
+...+...+... ....+...+. ++.+|++||++... ..+.+...+.. ...+..||+||..
T Consensus 76 ~~~~~~~~~~~~-----~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 76 FAQAMVEHLKKG-----TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp HHHHHHHHHHHT-----CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHHHHcC-----cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 223333332211 1122222232 36799999995432 22223222110 1235578887753
No 46
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.11 E-value=4.8e-06 Score=81.55 Aligned_cols=50 Identities=30% Similarity=0.364 Sum_probs=41.8
Q ss_pred CCCCccccchhHHHHHHhhcCC---------------CCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 27 NKNQLVGVESTVEEIESLLGVE---------------SKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 27 ~~~~~vGR~~~l~~l~~~L~~~---------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.-.+++|++..++++.+++... .+..+.+.|+|++|+|||++|+.+++..
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4467999999999999998741 0134689999999999999999999987
No 47
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.07 E-value=1.6e-05 Score=76.83 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=40.9
Q ss_pred CCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 28 KNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
-+.++||+.+++.+...|... ...-+.|+|.+|+|||++|+.+++.+..
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 356999999999999999742 2335679999999999999999998754
No 48
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.02 E-value=1e-06 Score=70.68 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=34.1
Q ss_pred CCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 29 NQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
-.++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 458999999998888775311222347899999999999999998753
No 49
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.01 E-value=1.5e-05 Score=82.93 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=40.2
Q ss_pred CCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 28 KNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
-+.++||+++++++...|... ....+.|+|.+|+|||++|+.+++.+.
T Consensus 169 ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 356899999999999998742 334578999999999999999999763
No 50
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.99 E-value=6.9e-05 Score=76.89 Aligned_cols=47 Identities=28% Similarity=0.330 Sum_probs=40.0
Q ss_pred CCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 29 NQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+.++||+.+++.+.+.|... ...-+.|+|.+|+|||++|+.+++.+.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 56899999999999998843 334578999999999999999998763
No 51
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.98 E-value=4.2e-05 Score=71.41 Aligned_cols=52 Identities=21% Similarity=0.345 Sum_probs=40.8
Q ss_pred CCCccccchhHHHHHHhhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 28 KNQLVGVESTVEEIESLLGV-----------ESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
-+++.|-++..++|.+.+.. +-..++-|.++|++|+|||.||+++++.....
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 35688999998888876531 22345679999999999999999999987644
No 52
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.96 E-value=7.6e-06 Score=72.85 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=41.8
Q ss_pred CCCCCCCccccchhHHHHHHhhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 24 PRDNKNQLVGVESTVEEIESLLGV----------ESKGVYALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 24 ~~~~~~~~vGR~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
++..-..++|.+...+.+.+.+.. +....+-+.|+|++|+|||+||+.+++.....|
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~ 72 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPF 72 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 344457899999988888876541 111233478999999999999999999875443
No 53
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.96 E-value=3.2e-05 Score=71.28 Aligned_cols=52 Identities=21% Similarity=0.329 Sum_probs=40.4
Q ss_pred CCCCccccchhHHHHHHhhcCC---CCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 27 NKNQLVGVESTVEEIESLLGVE---SKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 27 ~~~~~vGR~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.-..++|.+..++.+...+..+ ......+.|+|++|+||||||+.+++.+..
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3367899988888887776532 223457899999999999999999998754
No 54
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.94 E-value=1.1e-05 Score=73.39 Aligned_cols=58 Identities=14% Similarity=0.300 Sum_probs=42.3
Q ss_pred CCccccchhHHHHHHhhcCC-------CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 044214 29 NQLVGVESTVEEIESLLGVE-------SKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFL 86 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 86 (385)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+++.....-...+.+
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 35889999988888877531 11235799999999999999999999775443333344
No 55
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.93 E-value=2.6e-05 Score=68.89 Aligned_cols=55 Identities=24% Similarity=0.262 Sum_probs=39.6
Q ss_pred CCCCCCCccccchhHHHHHHhhc---CC-------CCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 24 PRDNKNQLVGVESTVEEIESLLG---VE-------SKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 24 ~~~~~~~~vGR~~~l~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
++..-.+++|.+...+++.+.+. .. ....+-+.|+|++|+||||||+.+++....
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 71 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV 71 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 34445779999988887766432 11 112345889999999999999999987643
No 56
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.91 E-value=1.7e-05 Score=76.74 Aligned_cols=48 Identities=25% Similarity=0.439 Sum_probs=39.6
Q ss_pred CCccccchhHHHHHHhhcCC-----------CCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 29 NQLVGVESTVEEIESLLGVE-----------SKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..++|.+..+++|.+++... ....+-|.|+|.+|+|||++|+.+++..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 56899999999998877531 2345578999999999999999999875
No 57
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=7.7e-05 Score=70.71 Aligned_cols=54 Identities=20% Similarity=0.347 Sum_probs=41.6
Q ss_pred CCCCCccccchhHHHHHHhhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 26 DNKNQLVGVESTVEEIESLLGV-----------ESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
..-.++.|-++..++|.+.+.. +-..++-|.++|++|+|||.||+++++.....
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~ 242 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN 242 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3345688999888888776531 22446789999999999999999999987543
No 58
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.86 E-value=1.5e-05 Score=73.74 Aligned_cols=49 Identities=20% Similarity=0.336 Sum_probs=40.3
Q ss_pred CCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 28 KNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
-..++|.+..++.|...+..+ +.+.+.++|++|+||||+|+.+++.+..
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 356889999999999988843 3334899999999999999999997643
No 59
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.85 E-value=1.8e-05 Score=70.35 Aligned_cols=49 Identities=22% Similarity=0.173 Sum_probs=34.8
Q ss_pred CCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 29 NQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+.++|.+..+.++.+.+..-......|.|+|.+|+|||++|+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4589999999888776653112224678999999999999999998653
No 60
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.83 E-value=6.1e-05 Score=77.28 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=40.8
Q ss_pred CCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 28 KNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
-+.++||+.+++++...|... ...-+.++|.+|+|||++|+.+++.+..
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 356999999999999999742 2334789999999999999999998743
No 61
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=0.00014 Score=65.92 Aligned_cols=117 Identities=10% Similarity=0.076 Sum_probs=67.9
Q ss_pred ccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh---CCCCceEEEeeccccccCCCChHHHHHHHHHH
Q 044214 33 GVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS---GDFDGSCFLENVREESQIPGGLSCLRQKLLSN 109 (385)
Q Consensus 33 GR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~---~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~ 109 (385)
|-++.++.|.+.+..+. .+...++|++|+|||++|+.+++... ........+...+ .. ..+..+ +++...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~~-~~id~i-r~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---EN-IGIDDI-RTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SC-BCHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---CC-CCHHHH-HHHHHH
Confidence 44566778888887543 67899999999999999999998532 2233444443111 01 222222 233333
Q ss_pred HhCCCCCCchHHHHHHHhCCceEEEEEeCCCC--hhhhhHhhccCCCCCCCcEEEEEeccH
Q 044214 110 LLKDKNVMPYIDLNFRRLGHMKVLIVFDDVTC--FSQLESLMGSLDWLTPVSRIILTTRNK 168 (385)
Q Consensus 110 l~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ilvTtR~~ 168 (385)
..... ..+++-++|+|+++. ....+.++..+....+.+.+|++|.++
T Consensus 74 ~~~~p------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 74 LNYSP------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp HTSCC------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred Hhhcc------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 32211 124567899999964 345566665554444567777766543
No 62
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.81 E-value=1.7e-05 Score=63.94 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=27.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
-..++|+|..|+|||||++.++......-...+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 357999999999999999999997754312255654
No 63
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.77 E-value=0.00024 Score=65.38 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=32.5
Q ss_pred chhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 35 ESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 35 ~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
++..+.+.+.+..+ .-.+.+.++|++|+|||++|+.+++.+..
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 44566777777632 23457899999999999999999997643
No 64
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.73 E-value=6.4e-05 Score=68.22 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=37.8
Q ss_pred CCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 29 NQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
+.++|++..+.++.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 458999999999888776422233457899999999999999999864
No 65
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.61 E-value=0.00019 Score=68.96 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=37.7
Q ss_pred CCCccccchhHHHHHHhhcC----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 28 KNQLVGVESTVEEIESLLGV----------ESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
-.+++|.++.++++.+.... +..-.+-|.|+|++|+|||+||+.+++....
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~ 75 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV 75 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35689999888777765431 1112345889999999999999999997643
No 66
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00019 Score=67.95 Aligned_cols=54 Identities=19% Similarity=0.323 Sum_probs=42.0
Q ss_pred CCCCCccccchhHHHHHHhhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 26 DNKNQLVGVESTVEEIESLLGV-----------ESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
..-.++.|-++..++|.+.+.. +-..++-|.++|++|+|||.||+++++.....
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~ 270 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT 270 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC
Confidence 3345789999999888875421 22456789999999999999999999987644
No 67
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00016 Score=68.45 Aligned_cols=53 Identities=17% Similarity=0.287 Sum_probs=41.2
Q ss_pred CCCCccccchhHHHHHHhhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 27 NKNQLVGVESTVEEIESLLGV-----------ESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 27 ~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
.-.++.|-++..++|.+.+.. +-..++-|.++|++|+|||.||+++++.....
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 335688999888888776531 22446779999999999999999999987543
No 68
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.56 E-value=0.00019 Score=68.96 Aligned_cols=51 Identities=27% Similarity=0.313 Sum_probs=39.2
Q ss_pred CCccccchhHHHHHHhh---cCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 29 NQLVGVESTVEEIESLL---GVESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L---~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
..++|.+...+.+..++ ..+....+-+.++|++|+|||++|+.+++.+...
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK 90 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence 67999998877655543 3333334578899999999999999999987644
No 69
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00026 Score=67.00 Aligned_cols=55 Identities=20% Similarity=0.296 Sum_probs=42.2
Q ss_pred CCCCCCccccchhHHHHHHhhc----C-------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 25 RDNKNQLVGVESTVEEIESLLG----V-------ESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 25 ~~~~~~~vGR~~~l~~l~~~L~----~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
...-..+.|-++..++|.+.+. . +-..++-|.++|++|+|||.||+++++.....
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT 242 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC
Confidence 3344678999999998887542 1 22346789999999999999999999987543
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.48 E-value=0.00021 Score=73.30 Aligned_cols=59 Identities=22% Similarity=0.393 Sum_probs=42.6
Q ss_pred CCccccchhHHHHHHhhcCC-------CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 29 NQLVGVESTVEEIESLLGVE-------SKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+++.....-...+.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~ 556 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID 556 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe
Confidence 45899999888887776521 112337999999999999999999998744433344443
No 71
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.00033 Score=65.72 Aligned_cols=54 Identities=26% Similarity=0.430 Sum_probs=41.3
Q ss_pred CCCCCccccchhHHHHHHhhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 26 DNKNQLVGVESTVEEIESLLGV-----------ESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 26 ~~~~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
..-.++.|-++..++|.+.+.. +-..++-|.++|++|+|||.||+++++.....
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~ 243 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT 243 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC
Confidence 3345688899888888775531 22346789999999999999999999987644
No 72
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.40 E-value=0.00036 Score=63.37 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=38.5
Q ss_pred CCccccc----hhHHHHHHhhcCCC-CCeEEEEEEcCCCchHHHHHHHHHHHhh-CCCCceEEEe
Q 044214 29 NQLVGVE----STVEEIESLLGVES-KGVYALGIWGIGGIGKTTIARAIFDKIS-GDFDGSCFLE 87 (385)
Q Consensus 29 ~~~vGR~----~~l~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~w~~ 87 (385)
+.|++.+ ..++.+.+++.... .....+.|+|.+|+|||+||..+++... .....+.++.
T Consensus 124 d~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 124 SDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp GGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred hhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4566433 34445556665321 1246788999999999999999999766 4434455554
No 73
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.39 E-value=0.00047 Score=58.95 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=26.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
-.++.|+|.+|+||||||..++. . .-..++|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~--~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-L--SGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-H--HCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-H--cCCcEEEEE
Confidence 35899999999999999999988 2 224566665
No 74
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.30 E-value=0.00028 Score=71.85 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=38.3
Q ss_pred CCccccchhHHHHHHhhc----C-------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 29 NQLVGVESTVEEIESLLG----V-------ESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~----~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+++.|-++.+++|.+.+. . +-..++-|.++|++|+|||+||+++++...
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 457888988888887653 1 123467899999999999999999998654
No 75
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.25 E-value=0.00092 Score=64.62 Aligned_cols=54 Identities=24% Similarity=0.378 Sum_probs=38.8
Q ss_pred CCCCCCCccccchhHHHHHHhhc---CC-------CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 24 PRDNKNQLVGVESTVEEIESLLG---VE-------SKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 24 ~~~~~~~~vGR~~~l~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+...-.+++|.++...++.+... .. -.-.+-+.|+|++|+|||+||+.++....
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34445779999988777766532 11 01123489999999999999999998764
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.21 E-value=0.0009 Score=69.48 Aligned_cols=49 Identities=16% Similarity=0.374 Sum_probs=38.1
Q ss_pred CccccchhHHHHHHhhcCC-------CCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 30 QLVGVESTVEEIESLLGVE-------SKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 30 ~~vGR~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.++|.+..++.+...+... ......+.|+|++|+|||++|+.+++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4789999888887766421 112357899999999999999999997644
No 77
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.19 E-value=0.00016 Score=65.37 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=38.8
Q ss_pred CCccccchhHHHHHHhhcC------------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 29 NQLVGVESTVEEIESLLGV------------ESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+.++|.+..++.+...+.. .......+.|+|.+|+|||++|+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999998877653 012345688999999999999999999774
No 78
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.16 E-value=0.0032 Score=58.07 Aligned_cols=81 Identities=15% Similarity=0.129 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhhccCCCCCCC-----CCC-ccccchhHHHHHHhhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 5 ELINEVVNHILKRLDEVFRPRDN-----KNQ-LVGVESTVEEIESLLG-VESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 5 ~~i~~i~~~v~~~l~~~~~~~~~-----~~~-~vGR~~~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+.++....++.+.+.. ..+.. ... .-....-...|-..|. .+=..-.++.|+|.+|+||||||.+++....
T Consensus 9 ~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 9 SVLEKALKRIEENFGK--GSIMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp HHHHHHHHHHHHHHCT--TSSCCTTCCSCCCCCCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--CCceechhccccCCCceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3466666677666654 21111 011 1122223345555554 2223346999999999999999999998765
Q ss_pred CCCCceEEEe
Q 044214 78 GDFDGSCFLE 87 (385)
Q Consensus 78 ~~f~~~~w~~ 87 (385)
..-..++|+.
T Consensus 87 ~~gg~VlyId 96 (356)
T 3hr8_A 87 KMGGVAAFID 96 (356)
T ss_dssp HTTCCEEEEE
T ss_pred hcCCeEEEEe
Confidence 4434567775
No 79
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.12 E-value=0.0008 Score=66.06 Aligned_cols=48 Identities=29% Similarity=0.349 Sum_probs=35.0
Q ss_pred ccccchhHHHHHHhhc----CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 31 LVGVESTVEEIESLLG----VESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 31 ~vGR~~~l~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.+|-++....+.+.+. ........+.++|++|+||||||+.++.....
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6787777666655332 11224558999999999999999999987743
No 80
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.10 E-value=0.0011 Score=55.49 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=60.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHH---hC----CCCC----C----
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNL---LK----DKNV----M---- 117 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l---~~----~~~~----~---- 117 (385)
..|.|++-.|.||||.|...+-+...+--.+.++...... .. .+-..++..+.-.+ +. ...+ .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~-~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WP-NGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SC-CHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CC-ccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 3566666677999999999998765554455555423221 11 33333333331000 00 0000 0
Q ss_pred chHHHHHHHhCC-ceEEEEEeCCC-----ChhhhhHhhccCCCCCCCcEEEEEeccH
Q 044214 118 PYIDLNFRRLGH-MKVLIVFDDVT-----CFSQLESLMGSLDWLTPVSRIILTTRNK 168 (385)
Q Consensus 118 ~~~~~l~~~l~~-k~~LlVlDdv~-----~~~~~~~l~~~~~~~~~gs~ilvTtR~~ 168 (385)
......++.+.+ +-=|||||++. ..-..+.++..+........||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 333445555554 44599999993 2222333333333334567899999985
No 81
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.07 E-value=0.00037 Score=63.01 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=25.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.+++.|+|++|+|||+||.+++.. . -..+.|+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-~--G~~VlyIs 155 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-L--GGKDKYAT 155 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-H--HTTSCCEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-C--CCCEEEEE
Confidence 356789999999999999999886 1 12345665
No 82
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.06 E-value=0.0003 Score=64.46 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=39.3
Q ss_pred CCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 29 NQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
+.++|++..++.+...+..+ ..+.++|.+|+|||+||+.+++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 56999999999988887742 258899999999999999999876543
No 83
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.06 E-value=0.00046 Score=61.59 Aligned_cols=54 Identities=24% Similarity=0.401 Sum_probs=37.7
Q ss_pred CCCCCCCccccchhHHHHHHhhcC--C--------CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 24 PRDNKNQLVGVESTVEEIESLLGV--E--------SKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 24 ~~~~~~~~vGR~~~l~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+...-++++|.+....++.+.... . -.-.+-+.|+|++|+||||||+.++....
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 344446789998877776654321 0 01112389999999999999999998765
No 84
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.05 E-value=0.00041 Score=71.40 Aligned_cols=49 Identities=24% Similarity=0.424 Sum_probs=39.4
Q ss_pred CCccccchhHHHHHHhhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 29 NQLVGVESTVEEIESLLGV-----------ESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+.++|.+..+++|.+++.. .-.....|.|+|.+|+||||||+.++....
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 5689999999998887642 123345799999999999999999998654
No 85
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.04 E-value=0.00019 Score=66.38 Aligned_cols=109 Identities=12% Similarity=0.078 Sum_probs=64.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE-eeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCce
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFL-ENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHMK 131 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~-~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~ 131 (385)
.+++|+|+.|+|||||.+.+...+.......++. ....+... .... ....+.............+...|...+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~--~~~~----~~v~q~~~~~~~~~~~~~La~aL~~~P 197 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVH--ESKK----CLVNQREVHRDTLGFSEALRSALREDP 197 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC--CCSS----SEEEEEEBTTTBSCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhh--hccc----cceeeeeeccccCCHHHHHHHHhhhCc
Confidence 4899999999999999999988664432233322 21110000 0000 000000000011245568888899999
Q ss_pred EEEEEeCCCChhhhhHhhccCCCCCCCcEEEEEeccHHH
Q 044214 132 VLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQV 170 (385)
Q Consensus 132 ~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~ 170 (385)
=+|++|.+.+.+.++.+.... ..|..|++|+...+.
T Consensus 198 dvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 198 DIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSA 233 (356)
T ss_dssp SEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSH
T ss_pred CEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChH
Confidence 999999998877766655442 246668888876543
No 86
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.03 E-value=0.0011 Score=56.07 Aligned_cols=44 Identities=23% Similarity=0.370 Sum_probs=33.7
Q ss_pred cchhHHHHHHhhcC-CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 34 VESTVEEIESLLGV-ESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 34 R~~~l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
|++.++.+.+.+.. ......+|+|.|.+|+||||+++.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45566777666653 234567999999999999999999998664
No 87
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.03 E-value=0.0021 Score=57.25 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=33.4
Q ss_pred CCCccccchhHHHHHHhhc----C-------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 28 KNQLVGVESTVEEIESLLG----V-------ESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~~L~----~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
-.++.|-++..++|.+.+. . +-.-.+-+.|+|++|+||||||+.++....
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 3567787777777766432 0 001122399999999999999999998754
No 88
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.01 E-value=0.0016 Score=66.73 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=37.5
Q ss_pred CCccccchhHHHHHHhhcC-------CCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 29 NQLVGVESTVEEIESLLGV-------ESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..++|.+..++.+...+.. .......+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 3588999888888776642 11223478999999999999999999977
No 89
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.01 E-value=0.018 Score=54.55 Aligned_cols=36 Identities=22% Similarity=0.088 Sum_probs=28.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFL 86 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 86 (385)
++.+|.++|.+|+||||++..++..++..-..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 468999999999999999999998776553334444
No 90
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.00 E-value=0.001 Score=54.72 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.6
Q ss_pred eEEEEEEcCCCchHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAI 72 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~ 72 (385)
-.+++|+|+.|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 358999999999999999963
No 91
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.95 E-value=0.00083 Score=57.13 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=30.9
Q ss_pred hHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 37 TVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 37 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.+++|.+.+....+...+|+|.|..|+|||||++.+...+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44555555543234567999999999999999999998765
No 92
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.94 E-value=0.00039 Score=57.41 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.+|.|+|++|+||||+|+.+++++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998764
No 93
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.94 E-value=0.00014 Score=60.85 Aligned_cols=107 Identities=12% Similarity=-0.053 Sum_probs=51.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCC--CCchHHHHHHHhCCc
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKN--VMPYIDLNFRRLGHM 130 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~--~~~~~~~l~~~l~~k 130 (385)
.++.|+|..|+||||++..++.+....-..+.++..... .. .+...+. ..++.... .......+.+.+.++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d--~r-~~~~~i~----s~~g~~~~~~~~~~~~~~~~~~~~~ 76 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKID--SR-YHSTMIV----SHSGNGVEAHVIERPEEMRKYIEED 76 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC--------CCCEEC----C----CEECEEESSGGGGGGGCCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccc--cc-cCcccEE----ecCCCceeeEEECCHHHHHHHhcCC
Confidence 478899999999999998888765333222333321100 00 0000000 00000000 001112233333445
Q ss_pred eEEEEEeCCCCh-hhhhHhhccCCCCCCCcEEEEEeccH
Q 044214 131 KVLIVFDDVTCF-SQLESLMGSLDWLTPVSRIILTTRNK 168 (385)
Q Consensus 131 ~~LlVlDdv~~~-~~~~~l~~~~~~~~~gs~ilvTtR~~ 168 (385)
.-+|++|.+... ..|...+..+.+ .|..|++|.++.
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~--~~~~Vi~~Gl~~ 113 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLD--RGIDVFCAGLDL 113 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHH--TTCEEEEEEESB
T ss_pred CCEEEEECcccCCHHHHHHHHHHHH--CCCCEEEEeecc
Confidence 679999999543 223333332221 277899988754
No 94
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.93 E-value=0.00071 Score=62.88 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=37.4
Q ss_pred CccccchhHHHHHHhhc-------------CCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 30 QLVGVESTVEEIESLLG-------------VESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 30 ~~vGR~~~l~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.++|.+..++.+...+. ........+.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 37899988888887772 1111345789999999999999999998763
No 95
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.86 E-value=0.00055 Score=56.02 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=22.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.+|+|.|++|+||||+|+.+++++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998764
No 96
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.85 E-value=0.00069 Score=58.23 Aligned_cols=107 Identities=13% Similarity=-0.048 Sum_probs=57.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCC--C----chHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNV--M----PYIDLNFR 125 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~--~----~~~~~l~~ 125 (385)
-.++.|+|..|+||||++..++.+...+-..++.+......... ..+.+.++..... . +....+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~--------~~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSI--------RNIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGC--------SSCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHH--------HHHHHhcCCCccccccCCHHHHHHHHHH
Confidence 46899999999999999999998876554444444311110000 0112222211111 1 22333333
Q ss_pred HhCC-ceEEEEEeCCCC--hhhhhHhhccCCCCCCCcEEEEEeccHH
Q 044214 126 RLGH-MKVLIVFDDVTC--FSQLESLMGSLDWLTPVSRIILTTRNKQ 169 (385)
Q Consensus 126 ~l~~-k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ilvTtR~~~ 169 (385)
.+.+ +.-+||+|.+.. .++++.+.. +.+ .|-.||+|.+..+
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKN 127 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBC
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecccc
Confidence 3333 345999999953 334333322 221 2678999998543
No 97
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.82 E-value=0.0014 Score=54.50 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=24.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
..|.|.|++|+||||+|+.+++++...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 28 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQ 28 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999987643
No 98
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.80 E-value=0.0016 Score=58.44 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=25.2
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 49 SKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 49 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.++..+|+|+|..|+||||||+.+...+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45678999999999999999999988654
No 99
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.79 E-value=0.0078 Score=54.90 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
...+++|+|+.|+||||+++.++..++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46799999999999999999999866443
No 100
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.79 E-value=0.034 Score=49.85 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=27.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhC-CCCceEEEe
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISG-DFDGSCFLE 87 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~w~~ 87 (385)
...+++|+|.+|+||||++..++..+.. .-..+.++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4569999999999999999999987653 323344443
No 101
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.75 E-value=0.0008 Score=56.77 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
...|+|+|++|+||||+|+.+++.+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999998763
No 102
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.72 E-value=0.011 Score=54.68 Aligned_cols=50 Identities=24% Similarity=0.211 Sum_probs=34.8
Q ss_pred HHHHHHhhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 38 VEEIESLLG-VESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 38 l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
...|-..|. .+=..-.++.|+|.+|+||||||.+++......-..++|++
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 444555554 11123358899999999999999999887654444677886
No 103
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.70 E-value=0.0075 Score=54.30 Aligned_cols=34 Identities=12% Similarity=0.003 Sum_probs=27.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCC--CCceEEEe
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISGD--FDGSCFLE 87 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~w~~ 87 (385)
++.|+|.+|+||||||.+++...... -..++|++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 78999999999999999998866543 24567776
No 104
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.70 E-value=0.0034 Score=57.08 Aligned_cols=37 Identities=16% Similarity=0.077 Sum_probs=28.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
...+++|+|.+|+||||++..++..+...-..+.++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4679999999999999999999987654433344443
No 105
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.69 E-value=0.00087 Score=55.65 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.+.|.|+|++|+||||+|+.+++++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999876
No 106
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.65 E-value=0.012 Score=54.12 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhccCCCCCCC-----CCCccccchhHHHHHHhhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 6 LINEVVNHILKRLDEVFRPRDN-----KNQLVGVESTVEEIESLLG-VESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 6 ~i~~i~~~v~~~l~~~~~~~~~-----~~~~vGR~~~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
.+++....+.++... ..+.. ....-+...-...|-..|. .+=..-.++.|+|.+|+||||||.+++......
T Consensus 11 ~~~~~~~~i~~~~~~--~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~ 88 (349)
T 2zr9_A 11 ALELAMAQIDKNFGK--GSVMRLGEEVRQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA 88 (349)
T ss_dssp HHHHHHHHHHHHHCT--TSSCCTTCCCCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCC--CCceeccccccccCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 456666666655544 21111 1112222223344444454 222234589999999999999999999766544
Q ss_pred CCceEEEe
Q 044214 80 FDGSCFLE 87 (385)
Q Consensus 80 f~~~~w~~ 87 (385)
-..++|++
T Consensus 89 g~~vlyi~ 96 (349)
T 2zr9_A 89 GGIAAFID 96 (349)
T ss_dssp TCCEEEEE
T ss_pred CCeEEEEE
Confidence 44577776
No 107
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.64 E-value=0.0047 Score=53.46 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=27.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhC------CCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISG------DFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~w~~ 87 (385)
-.++.|+|.+|+|||||++.++..... .-..++|+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 358999999999999999999985322 134667776
No 108
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.64 E-value=0.0021 Score=54.16 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=24.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
...+|+|+|++|+||||+|+.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998775
No 109
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.63 E-value=0.0013 Score=59.12 Aligned_cols=30 Identities=37% Similarity=0.582 Sum_probs=25.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
..++.+.++|++|+|||+||+.+++.....
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345688999999999999999999987433
No 110
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.63 E-value=0.0083 Score=56.73 Aligned_cols=37 Identities=19% Similarity=0.096 Sum_probs=28.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
...+|.++|.+|+||||++..++..++..-..+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3689999999999999999999987655433344443
No 111
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.62 E-value=0.0024 Score=53.09 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
...+|.|.|++|+||||+++.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3568999999999999999999987754
No 112
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.62 E-value=0.0012 Score=54.37 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 113
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.61 E-value=0.0016 Score=56.92 Aligned_cols=42 Identities=19% Similarity=0.074 Sum_probs=29.9
Q ss_pred chhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 35 ESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 35 ~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
...+.++.+.+.........|+|.|++|+||||+|+.+.+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 12 IDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 344444544433223356789999999999999999999865
No 114
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.61 E-value=0.0032 Score=57.21 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=34.3
Q ss_pred ccccchhHHHHHHhhcCC--CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 31 LVGVESTVEEIESLLGVE--SKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 31 ~vGR~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
++|-...+..+...+... ...+.+|+|.|..|+||||||+.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455555566555544432 34577999999999999999999987665
No 115
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.60 E-value=0.011 Score=55.96 Aligned_cols=81 Identities=15% Similarity=0.166 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHhhccCCCC--CCCC-CCccccchhHHHHHHhhcCC-------CCCeEEEEEEcCCCchHHHHHHHHH
Q 044214 4 SELINEVVNHILKRLDEVFRP--RDNK-NQLVGVESTVEEIESLLGVE-------SKGVYALGIWGIGGIGKTTIARAIF 73 (385)
Q Consensus 4 ~~~i~~i~~~v~~~l~~~~~~--~~~~-~~~vGR~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~ 73 (385)
.+.++++++.+..+.... .. ...+ ..++ +...+++.+.|... ...+++|.++|.+|+||||++..++
T Consensus 45 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 45 LPVVREFINRVKEKAVGH-EVNKSLTPGQEFV--KIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp HHHHHHHHHHHHHHHSSS-CCCSSSCTTTTTH--HHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-cccccCChHHHHH--HHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 345666676665544331 10 0111 1121 23345566666531 1346899999999999999999999
Q ss_pred HHhhCC-CCceEEEe
Q 044214 74 DKISGD-FDGSCFLE 87 (385)
Q Consensus 74 ~~~~~~-f~~~~w~~ 87 (385)
..+... -..+..+.
T Consensus 122 ~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 122 KFLREKHKKKVLVVS 136 (433)
T ss_dssp HHHHHTSCCCEEEEE
T ss_pred HHHHHhcCCeEEEEe
Confidence 877654 33444443
No 116
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.60 E-value=0.0092 Score=54.17 Aligned_cols=51 Identities=18% Similarity=0.062 Sum_probs=36.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSN 109 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~ 109 (385)
-.++.|.|.+|+||||||..++......-..++|++ .. .+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s-lE------~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS-LE------MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE-SS------SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE-CC------CCHHHHHHHHHHH
Confidence 358999999999999999999976544335666765 21 4455666665544
No 117
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.60 E-value=0.0015 Score=54.44 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
...+|.|.|++|+||||+|+.+++.+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999876
No 118
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.59 E-value=0.00092 Score=58.70 Aligned_cols=54 Identities=24% Similarity=0.401 Sum_probs=37.3
Q ss_pred CCCCCCCccccchhHHHHHHhhcC--C--------CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 24 PRDNKNQLVGVESTVEEIESLLGV--E--------SKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 24 ~~~~~~~~vGR~~~l~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
|...-++++|.+....++.+.... . -.-.+-+.|+|++|+||||||+.++....
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 344446789988777666554321 0 01122389999999999999999998764
No 119
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.58 E-value=0.0054 Score=55.96 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=28.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC------CCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGD------FDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~w~~ 87 (385)
-.++.|+|.+|+||||||.+++...... -..++|++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3589999999999999999999865332 24567776
No 120
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.57 E-value=0.0013 Score=53.75 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..+.|+|.|+.|+||||+|+.+++++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999998764
No 121
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.57 E-value=0.00073 Score=62.46 Aligned_cols=27 Identities=22% Similarity=-0.001 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
-+.++|+|.+|+|||||++.+++.+..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 358999999999999999999886643
No 122
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.56 E-value=0.01 Score=54.53 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=29.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhC------CCCceEEEe
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKISG------DFDGSCFLE 87 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~w~~ 87 (385)
..-.++.|+|.+|+||||||..++..... .-..++|++
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 34579999999999999999999986432 234567776
No 123
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.56 E-value=0.0023 Score=61.92 Aligned_cols=45 Identities=18% Similarity=0.053 Sum_probs=37.7
Q ss_pred CCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 29 NQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+.++|++..++.+...+..+ ..|.|+|++|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 45999999999888877633 2688999999999999999998663
No 124
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.52 E-value=0.0012 Score=53.88 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.+|+|.|++|+||||+|+.+ ++
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 37899999999999999999 54
No 125
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.50 E-value=0.0018 Score=60.48 Aligned_cols=48 Identities=17% Similarity=0.195 Sum_probs=36.5
Q ss_pred CccccchhHHHHHHhhc----C------------------------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 30 QLVGVESTVEEIESLLG----V------------------------ESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 30 ~~vGR~~~l~~l~~~L~----~------------------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.++|.+...+.|...+. . .......+.++|++|+|||++|+.+++...
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 47898888888877661 0 011234688999999999999999999774
No 126
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.48 E-value=0.00086 Score=55.92 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=23.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCC
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFD 81 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 81 (385)
+.|+|+|++|+|||||++++..+..+.|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 45889999999999999999887554443
No 127
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.48 E-value=0.0026 Score=51.99 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=26.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCC-CCce
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGD-FDGS 83 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~ 83 (385)
..++++|.|..|+|||||+..+...++.+ +...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~ 36 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVG 36 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeee
Confidence 45689999999999999999999877554 4433
No 128
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.47 E-value=0.003 Score=52.43 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=23.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
..|.|.|++|+||||+|+.+++++...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 30 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKE 30 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 479999999999999999999977643
No 129
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.47 E-value=0.0024 Score=52.46 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
...+|+|+|++|+||||+++.++...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999998865
No 130
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.47 E-value=0.0034 Score=53.10 Aligned_cols=28 Identities=29% Similarity=0.274 Sum_probs=24.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
..|+|.|++|+||||+|+.+++.+...+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5899999999999999999999876544
No 131
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.44 E-value=0.009 Score=53.84 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=24.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
...+++|+|+.|+||||+++.++..++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999986653
No 132
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.43 E-value=0.0035 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
+|.|.|++|+||||.|+.+++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999865
No 133
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.43 E-value=0.0011 Score=61.15 Aligned_cols=51 Identities=20% Similarity=0.148 Sum_probs=36.8
Q ss_pred CCCCCCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 25 RDNKNQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 25 ~~~~~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+..-+.++|.+...+.+...+.... ..-+.|+|.+|+|||++|+.+++...
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 3444679999987666554443211 22388999999999999999998764
No 134
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.42 E-value=0.0014 Score=53.75 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.+|+|+|++|+||||+++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998753
No 135
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.42 E-value=0.0013 Score=55.49 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..+|+|.|++|+||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 136
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.42 E-value=0.0028 Score=53.79 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=24.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
..+|+|.|+.|+||||+|+.+++.+...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35899999999999999999999875443
No 137
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.41 E-value=0.0023 Score=53.99 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
....+|+|.|++|+||||+|+.+++..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999864
No 138
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.41 E-value=0.0019 Score=56.79 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=22.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.+|+|+|++|+||||||+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998753
No 139
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.40 E-value=0.0016 Score=53.78 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.+.|.|+|++|+||||+|+.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999875
No 140
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.39 E-value=0.0018 Score=54.02 Aligned_cols=24 Identities=38% Similarity=0.346 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
..+++|+|++|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999874
No 141
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.38 E-value=0.0029 Score=53.34 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
...+|+|+|+.|+|||||++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999999876
No 142
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.38 E-value=0.0018 Score=59.30 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=31.8
Q ss_pred cchhHHHHHHhhcC--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 34 VESTVEEIESLLGV--ESKGVYALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 34 R~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
-+...+.+.+.+.. ..+....|.|+|++|+||||+++.++..+.-.|
T Consensus 4 ~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 34444445444431 234566799999999999999999998654333
No 143
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.37 E-value=0.0074 Score=57.39 Aligned_cols=33 Identities=27% Similarity=0.594 Sum_probs=25.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCCC-CceEEE
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISGDF-DGSCFL 86 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~w~ 86 (385)
.++|+|.+|+|||||+..+.......+ ...++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~ 186 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFA 186 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEEEEe
Confidence 588999999999999999998654433 333444
No 144
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.36 E-value=0.0023 Score=53.28 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..+|+|.|++|+||||+|+.+++.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998865
No 145
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.35 E-value=0.0078 Score=55.54 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
...+++|+|..|+||||+++.++..++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3579999999999999999999987654
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.35 E-value=0.0051 Score=50.56 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=35.0
Q ss_pred CCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCCC-C--CCeeEEEcCCCCCCCCC
Q 044214 320 QKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGEN-K--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 320 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~i-~--~~LryL~l~~~~~~~lP 380 (385)
..++.+.+.... ...+.+..|.++++|++|+|+++ .+|..+ . .+|++|+|+++.++.+|
T Consensus 33 ~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~ 97 (174)
T 2r9u_A 33 TDKQRLWLNNNQ--ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97 (174)
T ss_dssp TTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCcEEEeCCCC--ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC
Confidence 344555554443 23344566667777777777766 555443 3 67777777777776666
No 147
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.34 E-value=0.0086 Score=53.84 Aligned_cols=36 Identities=22% Similarity=0.168 Sum_probs=28.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
..+++++|.+|+||||++..++..+...-..+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 678999999999999999999987654433444544
No 148
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.33 E-value=0.0071 Score=55.90 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=31.3
Q ss_pred HHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 38 VEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 38 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
..++.+.+....++..+|+|+|.+|+|||||+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 334444454444567899999999999999999998876443
No 149
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.33 E-value=0.0023 Score=53.52 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..+|+|.|++|+||||+|+.+++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999865
No 150
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.33 E-value=0.0043 Score=53.08 Aligned_cols=41 Identities=27% Similarity=0.447 Sum_probs=30.1
Q ss_pred hHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 37 TVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 37 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
..+.+...+. ......|+|+|.+|+|||||+..+.......
T Consensus 25 ~a~~~r~~~~--~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 25 LADKNRKLLN--KHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHH--HTTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHH--hCCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3445555544 3356789999999999999999999865433
No 151
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.32 E-value=0.0025 Score=55.92 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=24.0
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..+.+|+|.|++|+||||+|+.+.+.+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567899999999999999999998654
No 152
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.31 E-value=0.0013 Score=54.35 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=18.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..+|.|.|++|+||||+|+.+++.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999988654
No 153
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.31 E-value=0.0024 Score=53.71 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.|+|.|+.|+||||+|+.+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
No 154
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.29 E-value=0.0026 Score=52.78 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
....|+|+|++|+||||+++.+++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999986
No 155
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.29 E-value=0.0024 Score=52.91 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
++++|+|++|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999998654
No 156
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.28 E-value=0.0041 Score=53.03 Aligned_cols=45 Identities=24% Similarity=0.348 Sum_probs=33.1
Q ss_pred ccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 33 GVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 33 GR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
+.++..+.+.+.+. ....+.|+|+|.+|+|||||+..+.......
T Consensus 13 ~~~~~~~~~~~~~~--~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 13 ENKRLAEKNREALR--ESGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHH--HHTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred hcHHHHHHHHHhhc--ccCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 33445555555554 2356799999999999999999999876544
No 157
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.28 E-value=0.0041 Score=56.40 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=29.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
++.++|+|+|-|||||||.|..++.-+...-..+.-+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46799999999999999999998886655434455554
No 158
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.28 E-value=0.0018 Score=53.72 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+|.|+|++|+||||+|+.+++++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 159
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.27 E-value=0.0027 Score=55.98 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..+|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 160
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.27 E-value=0.0028 Score=53.29 Aligned_cols=26 Identities=35% Similarity=0.343 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
++..+|+|+|+.|+||||+|+.+++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999999874
No 161
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.26 E-value=0.0033 Score=52.09 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
...|+|.|++|+||||+|+.+++.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999865
No 162
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.24 E-value=0.0036 Score=52.61 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=32.2
Q ss_pred chhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 35 ESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 35 ~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
..-+..+..++.. -++...+.|+|++|+|||++|..+++.+..
T Consensus 42 ~~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 42 ITFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3446667777663 223346899999999999999999998753
No 163
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.24 E-value=0.0031 Score=53.11 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
...|+|.|++|+||||+|+.+++.+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998763
No 164
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.24 E-value=0.0037 Score=51.93 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..+|+|.|++|+||||+|+.+++.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999865
No 165
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.24 E-value=0.0021 Score=52.87 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.|.|.|++|+||||+|+.+++++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 166
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.22 E-value=0.0041 Score=55.70 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
...+|.|.|++|+||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998865
No 167
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.21 E-value=0.0028 Score=54.21 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
...|+|.|++|+||||+|+.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998763
No 168
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.20 E-value=0.0023 Score=52.35 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..|.|.|++|+||||+|+.+++.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998763
No 169
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.20 E-value=0.0028 Score=53.11 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=22.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.+|+|.|++|+||||+|+.+++++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999998764
No 170
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.19 E-value=0.0022 Score=54.18 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.++|+|+|++|+|||||++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45899999999999999999998763
No 171
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.19 E-value=0.007 Score=49.45 Aligned_cols=58 Identities=10% Similarity=0.085 Sum_probs=33.5
Q ss_pred CeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCCC-C--CCeeEEEcCCCCCCCCC
Q 044214 321 KIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGEN-K--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 321 ~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~i-~--~~LryL~l~~~~~~~lP 380 (385)
.++.+.+.... ...+.+..|.++.+|++|+|+++ .+|... . .+|++|+|+++.++.+|
T Consensus 31 ~l~~L~L~~N~--i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~ 94 (170)
T 3g39_A 31 TTQVLYLYDNQ--ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94 (170)
T ss_dssp TCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcEEEcCCCc--CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC
Confidence 44444444443 23344556666777777777666 444433 3 66777777777666666
No 172
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.19 E-value=0.0027 Score=53.96 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
...+++|+|+.|+|||||++.+......
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3458999999999999999999986543
No 173
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.18 E-value=0.0079 Score=51.41 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=31.8
Q ss_pred CCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCCC-C--CCeeEEEcCCCCCCCCC
Q 044214 320 QKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGEN-K--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 320 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~i-~--~~LryL~l~~~~~~~lP 380 (385)
.+++.+.+..... ..+.+..|.++++|++|+|+++ .+|..+ . .+|++|+|+++.++.+|
T Consensus 56 ~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~ 120 (220)
T 2v9t_B 56 KKLRRIDLSNNQI--SELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120 (220)
T ss_dssp TTCCEEECCSSCC--CEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCEEECCCCcC--CCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeC
Confidence 3444444444332 2344555666666666666665 444443 2 56666666666666554
No 174
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.16 E-value=0.0032 Score=51.19 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.|+|.|++|+||||+|+.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 175
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.15 E-value=0.0038 Score=53.33 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=24.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.+.++|.|.|++|+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999865
No 176
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.14 E-value=0.011 Score=53.70 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.-.++.|+|.+|+|||+||.+++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998753
No 177
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.14 E-value=0.0052 Score=52.01 Aligned_cols=28 Identities=14% Similarity=0.225 Sum_probs=24.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
..+|+|.|+.|+||||+|+.+.+.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4589999999999999999999876543
No 178
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.13 E-value=0.003 Score=64.33 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=44.0
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCCCC--CCeeEEEcCCCCCCCCC-CCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGENK--CKISYLQDPGFAGVKLN-NFG 383 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~i~--~~LryL~l~~~~~~~lP-~~~ 383 (385)
...++.|.+..+... ..+..|.++++|++|+|+++ .+|.+|+ .+|++|+|++|.++.+| .|+
T Consensus 246 l~~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~ 313 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLT---ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFG 313 (727)
T ss_dssp CCSCSCCBCTTSCCS---CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTT
T ss_pred CCCCCEEEeeCCcCc---ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhh
Confidence 345666666655432 23455678888888888887 7788777 78888888888888888 454
No 179
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.12 E-value=0.0037 Score=52.86 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=22.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
....+|+|+|.+|+||||+|+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999998864
No 180
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.11 E-value=0.0042 Score=52.66 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
...+|+|+|..|+|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998654
No 181
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.11 E-value=0.01 Score=53.51 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=35.9
Q ss_pred chhHHHHHHhhcCC------CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 35 ESTVEEIESLLGVE------SKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 35 ~~~l~~l~~~L~~~------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
+...++|.+.|... .....+++|+|.+|+||||++..++..++..-..+.++.
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 34455566666432 134679999999999999999999987754433344443
No 182
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.11 E-value=0.0035 Score=52.14 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
.+++|.|+.|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999986
No 183
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.09 E-value=0.0022 Score=53.42 Aligned_cols=28 Identities=29% Similarity=0.534 Sum_probs=23.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
++++|.|+.|+|||||++.+.......|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 4789999999999999999998765443
No 184
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.08 E-value=0.0037 Score=52.05 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
+|+|.|+.|+||||+|+.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999997743
No 185
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.07 E-value=0.0037 Score=53.61 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.+|+|+|++|+||||+|+.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998865
No 186
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.06 E-value=0.0056 Score=58.00 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=37.5
Q ss_pred CCccccchhHHHHHHhhcC------------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 29 NQLVGVESTVEEIESLLGV------------ESKGVYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
..++|-++..+.+...+.. .....+-|.++|++|+|||++|+.++..+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3578888888877665521 01124568899999999999999999987543
No 187
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.06 E-value=0.021 Score=47.86 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=27.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.|+|-|.-|+||||.++.+++.+......+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4789999999999999999998876654454443
No 188
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.06 E-value=0.016 Score=53.83 Aligned_cols=110 Identities=11% Similarity=0.048 Sum_probs=60.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCce
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHMK 131 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~ 131 (385)
-.+++|+|+.|+||||+++.+...+.....+.+.+... .......... .+..+.............+...+...+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~-~~e~~~~~~~----~~v~Q~~~g~~~~~~~~~l~~~L~~~p 210 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PIEYVFKHKK----SIVNQREVGEDTKSFADALRAALREDP 210 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES-SCCSCCCCSS----SEEEEEEBTTTBSCSHHHHHHHTTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc-cHhhhhccCc----eEEEeeecCCCHHHHHHHHHHHhhhCc
Confidence 45899999999999999999998664432344433211 0000000000 000000000011144566777777778
Q ss_pred EEEEEeCCCChhhhhHhhccCCCCCCCcEEEEEeccHH
Q 044214 132 VLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQ 169 (385)
Q Consensus 132 ~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~ 169 (385)
=+|++|.+.+.+.+...+... ..|..|+.|+...+
T Consensus 211 d~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 211 DVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp SEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred CEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 899999998766655544332 24556777776543
No 189
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.00 E-value=0.0037 Score=52.65 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
.+|+|+|+.|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 190
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.00 E-value=0.0034 Score=53.99 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
...|+|.|++|+||||+|+.+++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999865
No 191
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.00 E-value=0.0039 Score=52.51 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=21.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.+|+|+|++|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 489999999999999999998765
No 192
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.99 E-value=0.0034 Score=53.76 Aligned_cols=26 Identities=27% Similarity=0.157 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
...|.|.|++|+||||+|+.+++.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998764
No 193
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=95.99 E-value=0.0081 Score=51.68 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=45.4
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCCCC--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGENK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~i~--~~LryL~l~~~~~~~lP 380 (385)
..+++.+.+..... ..+++..|..+.+|++|+|+++ .+|..+. .+|++|+++++.++.+|
T Consensus 87 l~~L~~L~Ls~N~l--~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 87 LTQLTVLDLGTNQL--TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp CTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred CCCcCEEECCCCcC--CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccC
Confidence 45667777666543 3456677888888888888887 7777777 88888888888888877
No 194
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.99 E-value=0.0035 Score=52.63 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
..++++|+|+.|+|||||++.+......
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~ 45 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPE 45 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCc
Confidence 3468999999999999999999986543
No 195
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.99 E-value=0.0038 Score=52.54 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.+++|+|+.|+|||||++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 489999999999999999998764
No 196
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.98 E-value=0.014 Score=53.79 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=34.7
Q ss_pred HHHHHHhhc-CCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 38 VEEIESLLG-VESKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 38 l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
...|-..|. .+=..-+++.|+|.+|+||||||.+++......-..++|++
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 344444453 22223458999999999999999999987654444677876
No 197
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.98 E-value=0.0073 Score=54.47 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=27.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
+..+++|+|++|+||||+++.++..++.. .+.+++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 35699999999999999999999876544 3344443
No 198
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.98 E-value=0.0042 Score=54.19 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..+|+|.|++|+|||||++.+++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999765
No 199
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.97 E-value=0.023 Score=53.91 Aligned_cols=53 Identities=21% Similarity=0.341 Sum_probs=36.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC-CCCceEEEeeccccccCCCChHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISG-DFDGSCFLENVREESQIPGGLSCLRQKLLSN 109 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~ 109 (385)
+.++|.|.+|+|||+|+..+++.+.. +-+..++.- +++. +....++.+++...
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~-iGER---~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG-VGER---TREGNDLYHEMIES 207 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEE-ESCC---HHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEE-CCCc---chHHHHHHHHhhhc
Confidence 47899999999999999999987643 334455543 3322 14466666666554
No 200
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.97 E-value=0.0053 Score=50.56 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..+|+|+|+.|+||||+++.+...+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46889999999999999999998764
No 201
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.96 E-value=0.039 Score=50.39 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=36.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNL 110 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l 110 (385)
.++.|.|.+|+||||||..++......-..++|++ . . .+..++...++...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS-l-----E-ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS-L-----E-MSAEQLALRALSDL 97 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE-S-----S-SCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-C-----C-CCHHHHHHHHHHHh
Confidence 48999999999999999999986644334555654 2 2 45667777766554
No 202
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.96 E-value=0.0056 Score=53.66 Aligned_cols=27 Identities=33% Similarity=0.336 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
...+|.|+|++|+||||+|+.+...+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999998754
No 203
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.93 E-value=0.0048 Score=51.48 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.|+|.|..|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987744
No 204
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.92 E-value=0.0048 Score=52.49 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.|+|.|++|+||||+|+.++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 205
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.91 E-value=0.0056 Score=51.26 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
...+|+|+|+.|+||||+|+.+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998863
No 206
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.90 E-value=0.0039 Score=53.28 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=21.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..|.|.|++|+||||+|+.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 207
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.88 E-value=0.0053 Score=50.73 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.++|+|..|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998654
No 208
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.87 E-value=0.0045 Score=52.26 Aligned_cols=22 Identities=50% Similarity=0.620 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
.+|+|+|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 209
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.87 E-value=0.019 Score=54.93 Aligned_cols=36 Identities=22% Similarity=0.405 Sum_probs=28.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
...+++|+|..|+|||||++.++..++.. .+.+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 45799999999999999999999876543 3444553
No 210
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=95.84 E-value=0.0069 Score=55.24 Aligned_cols=59 Identities=10% Similarity=0.126 Sum_probs=37.0
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCCCC--CCeeEEEcCCC-CCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGENK--CKISYLQDPGF-AGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~i~--~~LryL~l~~~-~~~~lP 380 (385)
...++.+.+...... ..+..|.++++|++|+|+++ .+|..++ .+|++|++++| .+..+|
T Consensus 103 l~~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p 167 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM---ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELP 167 (328)
T ss_dssp GTTCSEEEEESSCCC---CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCC
T ss_pred CCCCCEEECCCCCcc---chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccC
Confidence 455666666655432 23345667777777777776 5666666 67777777775 345566
No 211
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.83 E-value=0.0064 Score=51.59 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
...+|.|.|+.|+||||+|+.+...+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346899999999999999999998764
No 212
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=95.83 E-value=0.0079 Score=49.30 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=17.7
Q ss_pred ccCCCCCCcEEEecCc---ccCCCC-C--CCeeEEEcCCCCCCCCC
Q 044214 341 TFTKMPKLRFLKFYSS---SFNGEN-K--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 341 ~~~~~~~LrvL~l~~~---~lp~~i-~--~~LryL~l~~~~~~~lP 380 (385)
.|.++++|++|+|+++ .+|..+ . .+|++|++++|.++.+|
T Consensus 59 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 104 (176)
T 1a9n_A 59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 104 (176)
T ss_dssp CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGG
T ss_pred ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcch
Confidence 3444444444444444 333332 2 44444444444444444
No 213
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.83 E-value=0.031 Score=47.16 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=25.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCc
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDG 82 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 82 (385)
+-|+|-|..|+||||+++.+++.+...++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCE
Confidence 468999999999999999999988665553
No 214
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.83 E-value=0.0029 Score=53.68 Aligned_cols=25 Identities=24% Similarity=0.447 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
+|+|.|..|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987653
No 215
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.82 E-value=0.0082 Score=51.97 Aligned_cols=35 Identities=14% Similarity=0.071 Sum_probs=27.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.++.|.|.+|+||||||.+++......-..++|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 48999999999999999998876543434566665
No 216
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.81 E-value=0.013 Score=50.16 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=27.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhC------CCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISG------DFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~w~~ 87 (385)
-.+++|+|.+|+|||||++.++..... .-...+|+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~ 66 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 66 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE
Confidence 469999999999999999999875432 133466665
No 217
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.80 E-value=0.0052 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.|+|.|++|+||||+|+.+++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 218
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.77 E-value=0.0097 Score=53.68 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=29.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
...++|+|+|-||+||||+|..++..+...-..+.-+.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45789999999999999999999987655433455554
No 219
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=95.76 E-value=0.013 Score=48.90 Aligned_cols=60 Identities=15% Similarity=0.111 Sum_probs=42.4
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccC-CCCC--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFN-GENK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp-~~i~--~~LryL~l~~~~~~~lP 380 (385)
...++.+.+..... ..+.+..|.++.+|+.|+|+++ .+| ..+. .+|++|+|+++.+..+|
T Consensus 53 l~~L~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~ 118 (193)
T 2wfh_A 53 YKHLTLIDLSNNRI--STLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118 (193)
T ss_dssp CTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred ccCCCEEECCCCcC--CEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeC
Confidence 45566666665543 3456677888888888888877 444 3455 78888888888888877
No 220
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.75 E-value=0.0061 Score=54.37 Aligned_cols=25 Identities=40% Similarity=0.840 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHH
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
+.+.+|+|+|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999984
No 221
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=95.75 E-value=0.015 Score=49.98 Aligned_cols=60 Identities=12% Similarity=0.106 Sum_probs=42.5
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCC-CC--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGE-NK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~-i~--~~LryL~l~~~~~~~lP 380 (385)
..+++.+.+..... ..+++..|.++.+|++|+|+++ .+|.. +. .+|++|+++++.++.+|
T Consensus 63 l~~L~~L~L~~N~l--~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp 128 (229)
T 3e6j_A 63 LINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP 128 (229)
T ss_dssp CTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred ccCCcEEECCCCCC--CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccC
Confidence 45666666666543 3456677788888888888877 45544 34 78888888888888887
No 222
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.74 E-value=0.0013 Score=60.62 Aligned_cols=38 Identities=24% Similarity=0.102 Sum_probs=27.4
Q ss_pred HHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 40 EIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 40 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
+..+.|.+ -.+-+.++|.|.+|+|||+|+..+++.+..
T Consensus 164 raID~l~P-igrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 164 RLIDLFAP-IGKGQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp HHHHHHSC-CBTTCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred hhhhhccc-ccCCceEEEecCCCCChhHHHHHHHHHHhh
Confidence 34445543 123347899999999999999999987643
No 223
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.74 E-value=0.0059 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..|+|.|+.|+||||+++.+.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999865
No 224
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.72 E-value=0.0044 Score=52.13 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+.++|+|+.|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4789999999999999999988654
No 225
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.69 E-value=0.0062 Score=53.37 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..+|+|.|+.|+||||+++.+++++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999765
No 226
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.69 E-value=0.008 Score=51.47 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=26.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.+++|.|.+|+|||||++.++......-..+.|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 58999999999999999999975533223455554
No 227
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.68 E-value=0.01 Score=57.34 Aligned_cols=49 Identities=6% Similarity=0.053 Sum_probs=35.7
Q ss_pred CccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 30 QLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 30 ~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.-+.|.+..+.+.+..........+|.+.|++|+||||+|+.+++++..
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3455555556666655322334578999999999999999999998864
No 228
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.67 E-value=0.019 Score=52.46 Aligned_cols=103 Identities=16% Similarity=0.056 Sum_probs=59.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCceE
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHMKV 132 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~~ 132 (385)
..++|+|..|+|||||++.+...+.. -.+.+.+....+... ..... .. .+.. .........+...|..++=
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~--~~~~~----~i-~~~~-ggg~~~r~~la~aL~~~p~ 242 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVF--KHHKN----YT-QLFF-GGNITSADCLKSCLRMRPD 242 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCC--SSCSS----EE-EEEC-BTTBCHHHHHHHHTTSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeecccc--ccchh----EE-EEEe-CCChhHHHHHHHHhhhCCC
Confidence 37999999999999999999876543 345666653322110 00000 00 0000 0122445667777888888
Q ss_pred EEEEeCCCChhhhhHhhccCCCCCCCc-EEEEEeccH
Q 044214 133 LIVFDDVTCFSQLESLMGSLDWLTPVS-RIILTTRNK 168 (385)
Q Consensus 133 LlVlDdv~~~~~~~~l~~~~~~~~~gs-~ilvTtR~~ 168 (385)
+|++|.+...+.++.+ ..+. .|. -+|+||...
T Consensus 243 ilildE~~~~e~~~~l-~~~~---~g~~tvi~t~H~~ 275 (330)
T 2pt7_A 243 RIILGELRSSEAYDFY-NVLC---SGHKGTLTTLHAG 275 (330)
T ss_dssp EEEECCCCSTHHHHHH-HHHH---TTCCCEEEEEECS
T ss_pred EEEEcCCChHHHHHHH-HHHh---cCCCEEEEEEccc
Confidence 9999999875555433 3332 222 267777543
No 229
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.66 E-value=0.0075 Score=51.38 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 230
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=95.65 E-value=0.018 Score=47.04 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=39.0
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCC-CC--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGE-NK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~-i~--~~LryL~l~~~~~~~lP 380 (385)
...++.+.+..... ..+++..|..+.+|++|+|+++ .+|.. +. .+|++|+++++.++.+|
T Consensus 51 l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 116 (177)
T 2o6r_A 51 LTQLTKLSLSQNQI--QSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116 (177)
T ss_dssp CTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cccccEEECCCCcc--eEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeC
Confidence 34566666655432 2455566777777788887776 44443 34 77888888877777777
No 231
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.64 E-value=0.034 Score=52.46 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=23.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
....+|.|+|++|+||||+|+.++++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346799999999999999999998754
No 232
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=95.64 E-value=0.018 Score=49.18 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=46.0
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---cc-CCCCC--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SF-NGENK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~l-p~~i~--~~LryL~l~~~~~~~lP 380 (385)
..+++.+.+..... ..+++..|.++.+|++|+|+++ .+ |..+. .+|++|+|+++.++.+|
T Consensus 79 l~~L~~L~Ls~N~l--~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 144 (220)
T 2v9t_B 79 LRSLNSLVLYGNKI--TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA 144 (220)
T ss_dssp CSSCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcCCCEEECCCCcC--CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence 46677777776653 3567778889999999999988 33 45566 88999999999888887
No 233
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.63 E-value=0.0062 Score=60.57 Aligned_cols=48 Identities=23% Similarity=0.375 Sum_probs=39.6
Q ss_pred CCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 29 NQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.++.......
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 45899999998888888743 3789999999999999999998664443
No 234
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.63 E-value=0.0085 Score=52.18 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
...+|+|.|..|+|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998865
No 235
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.61 E-value=0.0074 Score=55.08 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.+|+|.|+.|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 236
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=95.61 E-value=0.0076 Score=48.89 Aligned_cols=17 Identities=18% Similarity=-0.052 Sum_probs=8.2
Q ss_pred CCeeEEEcCCCCCCCCC
Q 044214 364 CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 364 ~~LryL~l~~~~~~~lP 380 (385)
.+|++|++++|++..+|
T Consensus 120 ~~L~~L~l~~N~l~~~~ 136 (168)
T 2ell_A 120 ECLKSLDLFNCEVTNLN 136 (168)
T ss_dssp SCCCEEECCSSGGGTST
T ss_pred CCCCEEEeeCCcCcchH
Confidence 44555555555444444
No 237
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.61 E-value=0.0087 Score=54.19 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=25.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
....+|+|.|..|+|||||++.+...+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 45679999999999999999999986653
No 238
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.60 E-value=0.034 Score=53.00 Aligned_cols=53 Identities=23% Similarity=0.296 Sum_probs=37.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh-CCCCceEEEeeccccccCCCChHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKIS-GDFDGSCFLENVREESQIPGGLSCLRQKLLSN 109 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~ 109 (385)
+.++|.|.+|+|||+|+..+++.+. .+-+..+++- +++. .....++.+++...
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~-iGER---~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-VGER---TREGNDLYMEMKES 219 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE-ESCC---SHHHHHHHHHHHHT
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE-cccC---cHHHHHHHHhhhcc
Confidence 4689999999999999999998764 3445566664 3332 14566677766553
No 239
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.59 E-value=0.0079 Score=50.64 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+|+|.|..|+||||+|+.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998764
No 240
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.59 E-value=0.014 Score=47.78 Aligned_cols=60 Identities=12% Similarity=0.074 Sum_probs=49.8
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCC-CC--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGE-NK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~-i~--~~LryL~l~~~~~~~lP 380 (385)
..+++.+.+..... ..+++..|.++.+|++|+|+++ .+|.. +. .+|++|+++++++...|
T Consensus 56 l~~L~~L~Ls~N~l--~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 56 LVNLQQLYFNSNKL--TAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CcCCCEEECCCCCC--CccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 56788888877753 4567788999999999999998 67765 66 89999999999998776
No 241
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.58 E-value=0.0047 Score=54.04 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..|+|+|+.|+||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3799999999999999999998764
No 242
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.58 E-value=0.057 Score=51.63 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
.+.|.|.+|+|||+++..+...+....
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 889999999999999999998764443
No 243
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.58 E-value=0.012 Score=50.39 Aligned_cols=34 Identities=12% Similarity=-0.169 Sum_probs=25.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.|.+.|.||+||||+|..++......-..+.++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 4788999999999999999987654433344443
No 244
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.58 E-value=0.008 Score=51.89 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
...|.|.|++|+||||+|+.+++++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998764
No 245
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.57 E-value=0.008 Score=51.11 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.|+|.|++|+||||+|+.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 246
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.57 E-value=0.0092 Score=60.80 Aligned_cols=49 Identities=24% Similarity=0.369 Sum_probs=37.0
Q ss_pred CCccccchhHHHHHHhhcC-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 29 NQLVGVESTVEEIESLLGV-----------ESKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
....|.++..++|.+.+.. +-...+-|.++|++|+|||.+|+++++...
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~ 536 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC
Confidence 4567888888888776542 112345688999999999999999998654
No 247
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.56 E-value=0.012 Score=48.30 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=23.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.++++|+|..|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 568999999999999999999987643
No 248
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.54 E-value=0.016 Score=51.06 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=27.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
++|+|.|-||+||||+|..++..+...-..+..+.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 57888999999999999999987765544455554
No 249
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.54 E-value=0.019 Score=54.74 Aligned_cols=36 Identities=19% Similarity=0.037 Sum_probs=28.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
-.++.|.|.+|+||||||..++......-..++|++
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 358999999999999999999987644333556664
No 250
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=95.53 E-value=0.01 Score=58.84 Aligned_cols=61 Identities=11% Similarity=0.078 Sum_probs=38.9
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCC-CCC--CCeeEEEcCCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNG-ENK--CKISYLQDPGFAGVKLNN 381 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~-~i~--~~LryL~l~~~~~~~lP~ 381 (385)
..+++.+.+..+. -..+++.+|.++++|++|+|+++ .+|. .|. .+|++|++++|.++.+|.
T Consensus 75 l~~L~~L~Ls~N~--i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~ 141 (635)
T 4g8a_A 75 FPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 141 (635)
T ss_dssp CTTCCEEECTTCC--CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTT
T ss_pred CCCCCEEECCCCc--CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCCh
Confidence 3445555555443 23456667777777777777776 5554 344 777777777777777773
No 251
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=95.53 E-value=0.021 Score=46.67 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=27.1
Q ss_pred CCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCCC-C--CCeeEEEcCCCCCC
Q 044214 320 QKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGEN-K--CKISYLQDPGFAGV 377 (385)
Q Consensus 320 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~i-~--~~LryL~l~~~~~~ 377 (385)
.+++.+.+..... ..+++..|.++++|++|+|+++ .+|..+ . .+|++|+++++++.
T Consensus 76 ~~L~~L~l~~N~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 76 TKLTILYLHENKL--QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEEECCCCCc--cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 3444444444332 2334444555555555555554 444332 2 45555555555543
No 252
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.53 E-value=0.0082 Score=51.47 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.|+|.|++|+||||+|+.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 253
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=95.50 E-value=0.0074 Score=61.45 Aligned_cols=62 Identities=18% Similarity=0.165 Sum_probs=49.6
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCCCC--CCeeEEEcCCCCCCCCC-CCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGENK--CKISYLQDPGFAGVKLN-NFG 383 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~i~--~~LryL~l~~~~~~~lP-~~~ 383 (385)
...++.|.+..... ..++...| ++.+|++|+|+++ .+|.+|+ .+|++|+|++|.++.+| .|+
T Consensus 223 l~~L~~L~Ls~n~l--~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 290 (727)
T 4b8c_D 223 DQLWHALDLSNLQI--FNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290 (727)
T ss_dssp CCCCCEEECTTSCC--SCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG
T ss_pred CCCCcEEECCCCCC--CCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhc
Confidence 45677777766653 24555655 8999999999998 7888888 99999999999999999 553
No 254
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.49 E-value=0.017 Score=50.61 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
...++.+.|.||+||||++..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999998766
No 255
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.49 E-value=0.0081 Score=54.41 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=22.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
++|.|+|+.|+||||||..+++++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999865
No 256
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.48 E-value=0.0065 Score=49.82 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
++++|+|..|+|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999986644
No 257
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=95.47 E-value=0.022 Score=47.91 Aligned_cols=60 Identities=17% Similarity=0.188 Sum_probs=40.3
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCC-CC--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGE-NK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~-i~--~~LryL~l~~~~~~~lP 380 (385)
..+++.+.+..... ..+++..|.++++|++|+|+++ .+|.. +. .+|++|+++++.++.+|
T Consensus 51 l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 116 (208)
T 2o6s_A 51 LTSLTQLYLGGNKL--QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116 (208)
T ss_dssp CTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cccCcEEECCCCcc--CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccC
Confidence 45566666665543 2455666778888888888877 44543 34 78888888888887777
No 258
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.47 E-value=0.0092 Score=51.51 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..+|+|.|++|+||||+|+.+++.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998763
No 259
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.46 E-value=0.017 Score=52.94 Aligned_cols=60 Identities=15% Similarity=0.105 Sum_probs=45.8
Q ss_pred cCCeeEEEeec-CCceeeeeCccccCCCCCCcEEEecCc---ccC-CCCC--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDM-SKVIEICLNTSTFTKMPKLRFLKFYSS---SFN-GENK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~-~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp-~~i~--~~LryL~l~~~~~~~lP 380 (385)
..+++.|.+.. .. ...+++..|.++.+|+.|+|+++ .+| ..|. .+|++|+|+++.+..+|
T Consensus 30 ~~~L~~L~l~~~n~--l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 30 AENLTELYIENQQH--LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp CSCCSEEECCSCSS--CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred CCCeeEEEccCCCC--CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence 34577777764 43 34567788999999999999988 444 4556 89999999999999988
No 260
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.44 E-value=0.061 Score=51.21 Aligned_cols=52 Identities=15% Similarity=-0.014 Sum_probs=36.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEEeeccccccCCCChHHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGD-FDGSCFLENVREESQIPGGLSCLRQKLLSNL 110 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l 110 (385)
-.++.|.|.+|+||||||..++..+... -..++|++ . . .+...+...++...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s-l-----E-~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS-L-----E-MPAAQLTLRMMCSE 252 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE-S-----S-SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE-C-----C-CCHHHHHHHHHHHH
Confidence 3589999999999999999999876432 23566665 2 1 44556666665543
No 261
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.43 E-value=0.0086 Score=50.64 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=22.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.+++|+|+.|+|||||++.+...+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999988653
No 262
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.43 E-value=0.011 Score=51.25 Aligned_cols=35 Identities=26% Similarity=0.194 Sum_probs=25.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh-CCCCceEEEe
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKIS-GDFDGSCFLE 87 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~w~~ 87 (385)
.+++|.|+.|+|||||++.++.... ..-..++++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 5899999999999999999984321 2223455554
No 263
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.42 E-value=0.0074 Score=54.91 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..++|+|+|+.|+||||||..+++++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999999854
No 264
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.42 E-value=0.011 Score=53.17 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..++|+|.|+.|+||||||..++++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 45789999999999999999999864
No 265
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.39 E-value=0.0068 Score=51.83 Aligned_cols=24 Identities=33% Similarity=0.703 Sum_probs=21.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.+++|+|+.|+|||||++.+....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998865
No 266
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.39 E-value=0.0048 Score=55.35 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+..+|+|.|..|+||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 267
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=95.38 E-value=0.024 Score=47.61 Aligned_cols=61 Identities=13% Similarity=0.129 Sum_probs=47.4
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCC-CC--CCeeEEEcCCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGE-NK--CKISYLQDPGFAGVKLNN 381 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~-i~--~~LryL~l~~~~~~~lP~ 381 (385)
...++.+.+..... ..+++..|.++++|++|+|+++ .+|.. +. .+|++|+++++.++.+|.
T Consensus 75 l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 75 LTSLTYLNLSTNQL--QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp CTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCCcCEEECCCCcC--CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence 56778887776653 3566777899999999999988 55554 45 899999999999988883
No 268
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.38 E-value=0.017 Score=50.80 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=27.2
Q ss_pred HHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 41 IESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 41 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
+..++....++...+.++|++|.|||.+|..+++.+
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 455555332444579999999999999999999853
No 269
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.37 E-value=0.022 Score=51.46 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=24.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
....+|+|.|..|+|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4457999999999999999999998765
No 270
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.36 E-value=0.011 Score=47.73 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.-.+++|.|+.|+|||||++.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34589999999999999999999866
No 271
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.36 E-value=0.013 Score=51.53 Aligned_cols=110 Identities=11% Similarity=0.051 Sum_probs=60.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCce
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHMK 131 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k~ 131 (385)
-.+++|+|+.|+|||||++.+...+...+.+.+++.... ....+.....+..+ ..++. ........+.+.+..++
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~~~v~q--~~~gl--~~~~l~~~la~aL~~~p 99 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKKSIVNQ--REVGE--DTKSFADALRAALREDP 99 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSSSEEEE--EEBTT--TBSCHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCcceeeeH--HHhCC--CHHHHHHHHHHHHhhCC
Confidence 358999999999999999999886644334555543211 10000000000000 00000 01133455666666677
Q ss_pred EEEEEeCCCChhhhhHhhccCCCCCCCcEEEEEeccHH
Q 044214 132 VLIVFDDVTCFSQLESLMGSLDWLTPVSRIILTTRNKQ 169 (385)
Q Consensus 132 ~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~ 169 (385)
=+|++|...+.+....+.... ..|.-|++||.+.+
T Consensus 100 ~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 100 DVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 134 (261)
T ss_dssp SEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSS
T ss_pred CEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcch
Confidence 789999997665554444332 24666888887654
No 272
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.33 E-value=0.0092 Score=53.66 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
++|+|.|+.|+||||||..+++++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 589999999999999999999754
No 273
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.32 E-value=0.017 Score=51.47 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=27.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.++|+|.|-||+||||+|..++..+...-..+..+.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 468888999999999999999987654433444444
No 274
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.31 E-value=0.026 Score=54.47 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=27.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.+.++|+|+|.+|+||||++..++..+...-..+..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 34679999999999999999999987654422344443
No 275
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.31 E-value=0.016 Score=52.00 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=26.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCC-ceEEEe
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFD-GSCFLE 87 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~w~~ 87 (385)
.+++|.|.+|+|||||++.++..+..... .++|+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 48999999999999999999987654322 455554
No 276
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.30 E-value=0.0092 Score=51.07 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
-.+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35899999999999999999998654
No 277
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.29 E-value=0.043 Score=52.44 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=27.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC-CCCceEEEe
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISG-DFDGSCFLE 87 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~w~~ 87 (385)
.++.|.|.+|+||||||..++..+.. .-..++|++
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 58999999999999999999986643 223566665
No 278
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=95.28 E-value=0.027 Score=48.04 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=39.8
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---cc-CCCCC--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SF-NGENK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~l-p~~i~--~~LryL~l~~~~~~~lP 380 (385)
..+++.+.+..... ..+++..|..+++|++|+|+++ .+ |..+. .+|++|+|+++.++.+|
T Consensus 80 l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 80 ASGVNEILLTSNRL--ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp CTTCCEEECCSSCC--CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred CCCCCEEECCCCcc--CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence 44566666655542 3455666777888888888777 23 45565 77888888888777763
No 279
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.28 E-value=0.01 Score=53.24 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=21.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.+|.|.|++|+||||+|+.+.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 280
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.27 E-value=0.043 Score=46.61 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=24.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
..|+|.|+.|+||||+++.+.+.+...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999988654
No 281
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=95.24 E-value=0.0058 Score=48.48 Aligned_cols=17 Identities=18% Similarity=0.018 Sum_probs=8.3
Q ss_pred CCeeEEEcCCCCCCCCC
Q 044214 364 CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 364 ~~LryL~l~~~~~~~lP 380 (385)
.+|++|++++|++..+|
T Consensus 113 ~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 113 ENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp TTCCEEECTTCGGGGST
T ss_pred CCCCEEeCcCCcccchH
Confidence 44555555555444444
No 282
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=95.24 E-value=0.025 Score=48.21 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=45.9
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCC-CCC--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNG-ENK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~-~i~--~~LryL~l~~~~~~~lP 380 (385)
..+++.+.+..... ..+++..|.++++|++|+|+++ .+|. .+. .+|++|+++++.++.+|
T Consensus 56 l~~L~~L~L~~N~i--~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 121 (220)
T 2v70_A 56 LPQLRKINFSNNKI--TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG 121 (220)
T ss_dssp CTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC
T ss_pred CCCCCEEECCCCcC--CEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeEC
Confidence 45677777766653 3466778999999999999988 4444 355 89999999999998874
No 283
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.23 E-value=0.034 Score=61.88 Aligned_cols=80 Identities=16% Similarity=0.134 Sum_probs=49.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCC---------chHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVM---------PYID 121 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~---------~~~~ 121 (385)
..+.|.|+|++|+|||+||.+++.....+-..++|+. ..+. .+... ++.++.+..+. +...
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~-~e~~----~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~ 1495 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID-AEHA----LDPIY-----ARKLGVDIDNLLCSQPDTGEQALE 1495 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC-TTSC----CCHHH-----HHHTTCCTTTCEEECCSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE-cccc----cCHHH-----HHHcCCCchhceeecCChHHHHHH
Confidence 3568999999999999999999987766655677776 2221 22222 33333111111 3333
Q ss_pred HHHHHh-CCceEEEEEeCCC
Q 044214 122 LNFRRL-GHMKVLIVFDDVT 140 (385)
Q Consensus 122 ~l~~~l-~~k~~LlVlDdv~ 140 (385)
.+.+.. ..+.-+||+|.+.
T Consensus 1496 ~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1496 ICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHHTCCSEEEESCGG
T ss_pred HHHHHHhcCCCCEEEEcChh
Confidence 333333 2567899999994
No 284
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.22 E-value=0.01 Score=49.47 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+++|+|..|+|||||++.++..++
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999998654
No 285
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=95.19 E-value=0.023 Score=51.53 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=38.1
Q ss_pred CCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---cc-CCCCC--CCeeEEEcCCCCCCCCC
Q 044214 320 QKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SF-NGENK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 320 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~l-p~~i~--~~LryL~l~~~~~~~lP 380 (385)
..++.+.+.... -..+++..|.++++|++|+|+++ .+ |..++ .+|++|+++++.++.+|
T Consensus 52 ~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~ 116 (330)
T 1xku_A 52 PDTALLDLQNNK--ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116 (330)
T ss_dssp TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred CCCeEEECCCCc--CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccC
Confidence 345555555443 23345556777777777777776 33 55666 77777777777777777
No 286
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.17 E-value=0.022 Score=55.67 Aligned_cols=47 Identities=19% Similarity=0.322 Sum_probs=31.7
Q ss_pred cccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 32 VGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 32 vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
+.+.+..+.+.......-.+-.+++|+|+.|+|||||++.++..+..
T Consensus 349 f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 349 YSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp TSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 34444444444433211123468999999999999999999998764
No 287
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.17 E-value=0.029 Score=51.56 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=30.4
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhh--CCCCceEEEe
Q 044214 49 SKGVYALGIWGIGGIGKTTIARAIFDKIS--GDFDGSCFLE 87 (385)
Q Consensus 49 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~w~~ 87 (385)
....+++.+.|-||+||||+|..++..+. ..-..+.-+.
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 34567999999999999999999998776 5544555554
No 288
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=95.16 E-value=0.024 Score=56.14 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=29.8
Q ss_pred CCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---cc-CCCCC--CCeeEEEcCCCCCCCCC
Q 044214 320 QKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SF-NGENK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 320 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~l-p~~i~--~~LryL~l~~~~~~~lP 380 (385)
..++.+.+..+.. ..+.+..|.++++||+|+|+++ .+ |..|+ .+|++|++++|.+..+|
T Consensus 56 ~~L~~L~Ls~n~l--~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 120 (606)
T 3vq2_A 56 SELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120 (606)
T ss_dssp TTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSS
T ss_pred ccCcEEeCCCCcc--cccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccc
Confidence 3444444444332 2344455555566666666555 22 44454 55555555555555544
No 289
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.14 E-value=0.024 Score=50.30 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.++.|+|.+|+|||||+..++..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 48999999999999999999976543
No 290
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.12 E-value=0.031 Score=51.24 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=24.8
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 49 SKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 49 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
..+..+|+|+|.+|+|||||+..++....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45668999999999999999999987654
No 291
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.11 E-value=0.022 Score=51.08 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=27.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFL 86 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 86 (385)
...+++|+|.+|+||||++..++..+...-..+.++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 357899999999999999999998765443334444
No 292
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=95.11 E-value=0.03 Score=50.82 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=46.1
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCCCC--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGENK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~i~--~~LryL~l~~~~~~~lP 380 (385)
..+++.+.+..... ..+.+..|..+++|+.|+|+++ .+|..+. .+|++|++++|+++.+|
T Consensus 215 l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 215 LNNLAKLGLSFNSI--SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp CTTCCEEECCSSCC--CEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCCCCEEECCCCcC--ceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccC
Confidence 45667777666543 3345567888899999999988 7788777 88999999999998887
No 293
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.10 E-value=0.014 Score=50.41 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
....+|+|.|+.|+||||+++.++..+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999999865
No 294
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.10 E-value=0.014 Score=49.11 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=20.2
Q ss_pred CCccccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHH
Q 044214 29 NQLVGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 29 ~~~vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
..--|+....+.+.+... ..+.-.|+|+|.+|+|||||...+.+
T Consensus 9 ~~~~~~~~~~~~m~~~~~--~~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 9 HHSSGLVPRGSHMENLYF--QGQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -----------------------CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cccCCcccchhHHHhHhh--cCCeEEEEEECcCCCCHHHHHHHHHh
Confidence 333444444555544443 23345678999999999999998886
No 295
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.09 E-value=0.038 Score=46.74 Aligned_cols=109 Identities=12% Similarity=-0.008 Sum_probs=54.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCC--CCchHHHHHHHhC
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKN--VMPYIDLNFRRLG 128 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~--~~~~~~~l~~~l~ 128 (385)
.-.+..++|..|.||||.+...+.+....-..++.+..... .. ++... +.+.++.... .......+.+...
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~R-~ge~~----i~s~~g~~~~a~~~~~~~~~~~~~~ 99 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--NR-YSEED----VVSHNGLKVKAVPVSASKDIFKHIT 99 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------------CCEEECSSGGGGGGGCC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--Cc-chHHH----HHhhcCCeeEEeecCCHHHHHHHHh
Confidence 34688999999999999999998876554434444431111 11 22222 2233222211 0111122333333
Q ss_pred CceEEEEEeCCC--ChhhhhHhhccCCCCCCCcEEEEEeccHH
Q 044214 129 HMKVLIVFDDVT--CFSQLESLMGSLDWLTPVSRIILTTRNKQ 169 (385)
Q Consensus 129 ~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~ilvTtR~~~ 169 (385)
++-=+|++|.+. +.++++.+. .+. ..|-.||+|.++.+
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~-~l~--~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQ-VLA--NRGYRVIVAGLDQD 139 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHH-HHH--HTTCEEEEEECSBC
T ss_pred cCCCEEEEECcccCCHHHHHHHH-HHh--hCCCEEEEEecccc
Confidence 333499999984 344453333 222 13678999999654
No 296
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.07 E-value=0.027 Score=48.42 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
....|+|.|++|+||||+++.+.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4568999999999999999999998765
No 297
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.07 E-value=0.015 Score=50.44 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
...|+|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998764
No 298
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=95.05 E-value=0.02 Score=45.24 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=31.3
Q ss_pred CCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCcc----cCCCCC--CCeeEEEcCCCCCCCC
Q 044214 320 QKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSSS----FNGENK--CKISYLQDPGFAGVKL 379 (385)
Q Consensus 320 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~----lp~~i~--~~LryL~l~~~~~~~l 379 (385)
.+++.+.+..+..... ..|.++++|++|+|+++. +|..++ .+|++|++++|.++.+
T Consensus 42 ~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~ 103 (149)
T 2je0_A 42 EELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103 (149)
T ss_dssp TTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSH
T ss_pred CCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCCh
Confidence 4455555554432211 556666677777776662 333333 6677777777766654
No 299
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.04 E-value=0.011 Score=56.15 Aligned_cols=37 Identities=24% Similarity=0.191 Sum_probs=27.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.+.+|+|+|.+|+||||++..++......-..+..+.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3568999999999999999999986643322344443
No 300
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.03 E-value=0.0079 Score=51.80 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=16.0
Q ss_pred EEEEEEcCCCchHHHHHHHHH-HHh
Q 044214 53 YALGIWGIGGIGKTTIARAIF-DKI 76 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~-~~~ 76 (385)
.+++|+|+.|+|||||++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998 654
No 301
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=95.03 E-value=0.034 Score=48.26 Aligned_cols=59 Identities=14% Similarity=0.221 Sum_probs=33.4
Q ss_pred CCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCC-CCC--CCeeEEEcCCCCCCCCC
Q 044214 320 QKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNG-ENK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 320 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~-~i~--~~LryL~l~~~~~~~lP 380 (385)
.+++.+.+..... ..+++..|.++.+|++|+|+++ .+|. .++ .+|++|+++++.++.+|
T Consensus 107 ~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 107 TQLDKLYLGGNQL--KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCCCEEEcCCCcC--CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 4455555554432 2344555666666666666665 3443 344 56666666666666665
No 302
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.03 E-value=0.029 Score=45.69 Aligned_cols=60 Identities=13% Similarity=0.065 Sum_probs=48.7
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCC-CC--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGE-NK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~-i~--~~LryL~l~~~~~~~lP 380 (385)
..+++.+.+..... ..+++..|.++++|++|+|+++ .+|.. +. .+|++|+|+++++...+
T Consensus 53 l~~L~~L~Ls~N~l--~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 53 LTQLTRLDLDNNQL--TVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred cccCCEEECCCCCc--CccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 56788888877653 3677888999999999999998 66654 66 89999999999887654
No 303
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=95.01 E-value=0.027 Score=46.83 Aligned_cols=58 Identities=7% Similarity=0.033 Sum_probs=26.8
Q ss_pred CCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccC-CCCC--CCeeEEEcCCCCCCCC
Q 044214 320 QKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFN-GENK--CKISYLQDPGFAGVKL 379 (385)
Q Consensus 320 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp-~~i~--~~LryL~l~~~~~~~l 379 (385)
.+++.+.+..... ..+.+..|.++.+|++|+|+++ .+| ..+. .+|++|+++++.+..+
T Consensus 54 ~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 54 PHLVKLELKRNQL--TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp TTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred CCCCEEECCCCCC--CCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence 3444444444332 2233444555555555555554 222 2233 5555555555555443
No 304
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.01 E-value=0.011 Score=49.52 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
+.|.|.|.+|+||||||.+++++.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 568999999999999999998753
No 305
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.00 E-value=0.36 Score=41.46 Aligned_cols=40 Identities=23% Similarity=0.091 Sum_probs=28.8
Q ss_pred cccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 32 VGVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 32 vGR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
-=|+...+.+..++.. + -+.|+|..|.|||.+|..++...
T Consensus 93 ~l~~~Q~~ai~~~~~~---~--~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 93 SLRDYQEKALERWLVD---K--RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCHHHHHHHHHHTTT---S--EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHhC---C--CEEEEeCCCCCHHHHHHHHHHHc
Confidence 3355556666666552 1 27789999999999999888765
No 306
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.00 E-value=0.091 Score=51.73 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=23.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
+++.|+|.+|.||||++..+...+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 488899999999999999999866544
No 307
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=95.00 E-value=0.025 Score=56.05 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=39.4
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCC-CCC--CCeeEEEcCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNG-ENK--CKISYLQDPGFAGVKL 379 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~-~i~--~~LryL~l~~~~~~~l 379 (385)
..+++.+.+..... ..+++..|.++.+|++|+|+++ .+|. .|+ .+|++|+++++.+..+
T Consensus 99 L~~L~~L~Ls~N~l--~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~ 163 (635)
T 4g8a_A 99 LSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 163 (635)
T ss_dssp CTTCCEEECTTCCC--CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCEEEccCCcC--CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC
Confidence 45666666665542 3456677788888888888776 4544 355 7788888887777653
No 308
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=94.99 E-value=0.012 Score=57.90 Aligned_cols=57 Identities=7% Similarity=-0.046 Sum_probs=41.1
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCCCC--CCeeEEEcCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGENK--CKISYLQDPGFAGVKL 379 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~i~--~~LryL~l~~~~~~~l 379 (385)
..+++.+.+..+... ..+..|.++++|++|+|+++ .+| +++ .+|++|+|++|.++.+
T Consensus 462 l~~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~ 523 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR---ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQS 523 (567)
T ss_dssp GTTCCEEECCSSCCC---CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSS
T ss_pred cccCcEeecCccccc---ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCC
Confidence 456677777666432 23456778888888888887 666 566 7888888888888877
No 309
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.98 E-value=0.016 Score=46.13 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=20.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
+.|+|+|.+|+|||||...+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999986
No 310
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.94 E-value=0.035 Score=50.71 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=29.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
...+++.+.|-||+||||+|..++..+...-..+..+.
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34578889999999999999999987766544555554
No 311
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=94.92 E-value=0.013 Score=47.37 Aligned_cols=61 Identities=16% Similarity=0.242 Sum_probs=42.3
Q ss_pred cCCeeEEEeecCCceeeeeCc-cccCCCCCCcEEEecCc---ccCC----CCC--CCeeEEEcCCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNT-STFTKMPKLRFLKFYSS---SFNG----ENK--CKISYLQDPGFAGVKLNN 381 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~-~~~~~~~~LrvL~l~~~---~lp~----~i~--~~LryL~l~~~~~~~lP~ 381 (385)
..+++.+.+..+... .++. ..|.++++|++|+|+++ .+|. .+. .+|++|++++|.+..+|+
T Consensus 94 l~~L~~L~Ls~N~l~--~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 94 LPNLTHLNLSGNKLK--DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CTTCCEEECBSSSCC--SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred CCCCCEEeccCCccC--cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 456667766665431 1221 56788888888888887 5555 455 788888888888888884
No 312
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=94.92 E-value=0.014 Score=48.69 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=24.4
Q ss_pred ccccCCCCCCcEEEecCcc----cCCCCC--CCeeEEEcCCCCCCCCC
Q 044214 339 TSTFTKMPKLRFLKFYSSS----FNGENK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 339 ~~~~~~~~~LrvL~l~~~~----lp~~i~--~~LryL~l~~~~~~~lP 380 (385)
+..|.++++|+.|+|++|. +| .+. .+|++|++++|.+..+|
T Consensus 129 ~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 129 LTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp HHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT
T ss_pred HHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH
Confidence 3455666666666666653 32 233 56777777776666655
No 313
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.91 E-value=0.041 Score=50.02 Aligned_cols=36 Identities=28% Similarity=0.232 Sum_probs=27.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
..++...|-||+||||+|..++..+...-..+.-++
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 467788899999999999999987765544455554
No 314
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.89 E-value=0.033 Score=54.79 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=24.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+...+|.|.|++|+||||+|+.+.+++.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999998765
No 315
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.88 E-value=0.016 Score=48.19 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
...|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 316
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.87 E-value=0.027 Score=54.79 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
...+|.++|++|+||||+|+++++.+.-.|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 456899999999999999999998764444
No 317
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.86 E-value=0.042 Score=53.76 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=32.0
Q ss_pred ccchhHHHHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 33 GVESTVEEIESLLGVESKGVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 33 GR~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
.|.+..+.+.+..........+|.++|++|+||||+|+.+.+.+..
T Consensus 353 ~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 353 TRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 3444444555555322234578999999999999999999987643
No 318
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.85 E-value=0.021 Score=53.00 Aligned_cols=27 Identities=26% Similarity=0.112 Sum_probs=23.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
....+++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345689999999999999999999864
No 319
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=94.82 E-value=0.046 Score=48.11 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=39.3
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCC-CC--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGE-NK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~-i~--~~LryL~l~~~~~~~lP 380 (385)
..+++.+.+..+.. ..+++..|.++++|++|+|+++ .+|.. ++ .+|++|++++|.++.+|
T Consensus 108 l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 108 LTNLKELVLVENQL--QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp CTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcCCCEEECCCCcC--CccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 45566666655542 2455566777788888888777 44443 34 77888888888777776
No 320
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.81 E-value=0.021 Score=46.11 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999975
No 321
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=94.80 E-value=0.026 Score=51.83 Aligned_cols=61 Identities=13% Similarity=0.253 Sum_probs=34.1
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCC-CC--CCeeEEEcCCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGE-NK--CKISYLQDPGFAGVKLNN 381 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~-i~--~~LryL~l~~~~~~~lP~ 381 (385)
..+++.+.+..+.. ..+.+..|.++++|++|+|+++ .+|.. ++ .+|++|++++|.++.+|.
T Consensus 75 l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 141 (353)
T 2z80_A 75 CVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE 141 (353)
T ss_dssp CTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS
T ss_pred CCCCCEEECCCCcc--CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc
Confidence 34455555554432 2344555666666666666665 34433 33 566666666666666654
No 322
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=94.80 E-value=0.036 Score=54.77 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=49.9
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---cc-CCCCC--CCeeEEEcCCCCCCCC-C-CCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SF-NGENK--CKISYLQDPGFAGVKL-N-NFG 383 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~l-p~~i~--~~LryL~l~~~~~~~l-P-~~~ 383 (385)
...++.+.+..... ..+++..|.++++|++|+|+++ .+ |..++ .+||+|++++|.++.+ | .|+
T Consensus 31 ~~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 31 PSSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101 (606)
T ss_dssp CTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred CCCcCEEECCCCCc--CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC
Confidence 35677777776653 4567778999999999999988 44 56777 9999999999999988 5 453
No 323
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=94.77 E-value=0.036 Score=46.16 Aligned_cols=58 Identities=7% Similarity=0.097 Sum_probs=45.8
Q ss_pred CCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccC-CCCC--CCeeEEEcCCCCCCCCC
Q 044214 320 QKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFN-GENK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 320 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp-~~i~--~~LryL~l~~~~~~~lP 380 (385)
..++.+.+...... .+ +..|.++++|++|+|+++ .+| ..+. .+|++|+|+++.++.+|
T Consensus 31 ~~l~~L~L~~n~i~--~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~ 94 (193)
T 2wfh_A 31 RDVTELYLDGNQFT--LV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94 (193)
T ss_dssp TTCCEEECCSSCCC--SC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCCCEEECCCCcCc--hh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC
Confidence 46777777766542 23 378899999999999998 444 4466 89999999999999988
No 324
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.76 E-value=0.019 Score=53.48 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
++|+|.|+.|+||||||..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998753
No 325
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=94.75 E-value=0.012 Score=48.20 Aligned_cols=61 Identities=8% Similarity=0.109 Sum_probs=47.6
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCC--CCC--CCeeEEEcCCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNG--ENK--CKISYLQDPGFAGVKLNN 381 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~--~i~--~~LryL~l~~~~~~~lP~ 381 (385)
..+++.+.+..+.. ..+++..|..+++|++|+|+++ .+|. .++ .+|++|++++|++..+|.
T Consensus 63 l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~ 130 (176)
T 1a9n_A 63 LRRLKTLLVNNNRI--CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130 (176)
T ss_dssp CSSCCEEECCSSCC--CEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred CCCCCEEECCCCcc--cccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHh
Confidence 45677777776654 3456677889999999999998 5665 566 899999999999988875
No 326
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=94.74 E-value=0.026 Score=48.57 Aligned_cols=61 Identities=11% Similarity=0.125 Sum_probs=27.0
Q ss_pred CCeeEEEeecCCceeeeeCccccCCCCCCcEEEecC-c---ccCC-CCC--CCeeEEEcCCCCCCCCCC
Q 044214 320 QKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYS-S---SFNG-ENK--CKISYLQDPGFAGVKLNN 381 (385)
Q Consensus 320 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~-~---~lp~-~i~--~~LryL~l~~~~~~~lP~ 381 (385)
.+++.+.+..... ...+++..|.++++|++|+|++ + .+|. .+. .+|++|++++|.++.+|.
T Consensus 55 ~~L~~L~l~~n~~-l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~ 122 (239)
T 2xwt_C 55 PNISRIYVSIDVT-LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD 122 (239)
T ss_dssp TTCCEEEEECCSS-CCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC
T ss_pred CCCcEEeCCCCCC-cceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc
Confidence 3444444444320 1123344455555555555554 2 3332 222 455555555555555554
No 327
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=94.74 E-value=0.028 Score=55.22 Aligned_cols=42 Identities=14% Similarity=0.021 Sum_probs=21.0
Q ss_pred eCccccCCCCCCcEEEecCc---ccCCCCC-CCeeEEEcCCCCCCCC
Q 044214 337 LNTSTFTKMPKLRFLKFYSS---SFNGENK-CKISYLQDPGFAGVKL 379 (385)
Q Consensus 337 ~~~~~~~~~~~LrvL~l~~~---~lp~~i~-~~LryL~l~~~~~~~l 379 (385)
+.+..|.++++|++|+|+++ .+|.. . .+|++|++++|.+..+
T Consensus 91 ~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l 136 (562)
T 3a79_B 91 LDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVL 136 (562)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBC
T ss_pred CCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCCCCcccc
Confidence 33444555555555555544 44444 4 5555555555555444
No 328
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.73 E-value=0.027 Score=48.66 Aligned_cols=36 Identities=25% Similarity=0.184 Sum_probs=26.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH-hhCCCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDK-ISGDFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~-~~~~f~~~~w~~ 87 (385)
-.++.|.|.+|+|||+||.+++.. ....-..+++++
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 358999999999999999998754 333334455554
No 329
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.73 E-value=0.018 Score=59.25 Aligned_cols=53 Identities=25% Similarity=0.382 Sum_probs=40.3
Q ss_pred CCCccccchhHHHHHHhhcCC-----------CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 28 KNQLVGVESTVEEIESLLGVE-----------SKGVYALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
-..++|.++..+.|.+.+... -.....+.++|++|+|||+||+.+++.....|
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 356788888888888876521 12345688999999999999999999875543
No 330
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=94.72 E-value=0.042 Score=49.02 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=39.9
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCCC-C--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGEN-K--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~i-~--~~LryL~l~~~~~~~lP 380 (385)
..+++.+.+..... ..+++..|.++.+|+.|+|+++ .+|..+ . .+|++|+++++.++.+|
T Consensus 123 l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip 188 (290)
T 1p9a_G 123 LGELQELYLKGNEL--KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188 (290)
T ss_dssp CTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCCEEECCCCCC--CccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC
Confidence 34566666655543 2456666777777777777776 555544 3 67788888877777777
No 331
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.72 E-value=0.016 Score=50.25 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=21.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.+++|+|+.|+|||||.+.++.-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 332
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=94.71 E-value=0.035 Score=50.42 Aligned_cols=43 Identities=14% Similarity=0.071 Sum_probs=20.6
Q ss_pred CccccCCCCCCcEEEecCc---ccCCCCCCCeeEEEcCCCCCCCCC
Q 044214 338 NTSTFTKMPKLRFLKFYSS---SFNGENKCKISYLQDPGFAGVKLN 380 (385)
Q Consensus 338 ~~~~~~~~~~LrvL~l~~~---~lp~~i~~~LryL~l~~~~~~~lP 380 (385)
.+..|.++++|++|+|+++ .+|..+..+|++|+++++.++.+|
T Consensus 94 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~ 139 (332)
T 2ft3_A 94 HEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVP 139 (332)
T ss_dssp CGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCC
T ss_pred CHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccC
Confidence 3444455555555555544 333333345555555555555444
No 333
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=94.70 E-value=0.045 Score=49.27 Aligned_cols=63 Identities=10% Similarity=-0.021 Sum_probs=42.4
Q ss_pred CCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCCCCCCeeEEEcCCCCCCCCCCCC
Q 044214 320 QKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGENKCKISYLQDPGFAGVKLNNFG 383 (385)
Q Consensus 320 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~i~~~LryL~l~~~~~~~lP~~~ 383 (385)
.+++.+.+........ .+...+..+++|++|+|+++ .+|..+..+|++|+++++.++.+|.|+
T Consensus 228 ~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~p~~~ 293 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDA-AGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPD 293 (312)
T ss_dssp CCCSEEECTTSCCCSS-CCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSCCCTT
T ss_pred CCCCEEECCCCcCCcc-cchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCCCCCCChhHh
Confidence 4566666665543111 12355667788888888887 555555578888888888888888654
No 334
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.69 E-value=0.024 Score=45.40 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
..-.|+|+|.+|+|||||...+..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHc
Confidence 345688999999999999999986
No 335
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.69 E-value=0.028 Score=53.11 Aligned_cols=84 Identities=14% Similarity=0.075 Sum_probs=48.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCC----ceEEEeeccccccCCCChHHHHHHHHHHHh--------CCCCCC---
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFD----GSCFLENVREESQIPGGLSCLRQKLLSNLL--------KDKNVM--- 117 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~----~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~--------~~~~~~--- 117 (385)
+.++|.|.+|+|||+|+..+++....+.+ ..+++- +++.. ..+.++.+.+...-. ...++.
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~-iGeR~---~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~ 227 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAA-IGITF---EEAEFFMEDFRQTGAIDRSVMFMNLANDPAIE 227 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEE-EEECH---HHHHHHHHHHHHHTGGGGEEEEEEETTSCHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEE-ecCCc---HHHHHHHHHHhhcCCccceEEEEECCCCCHHH
Confidence 35789999999999999999987654323 333333 33221 445666666544210 011111
Q ss_pred -----chHHHHHHHh---CCceEEEEEeCCC
Q 044214 118 -----PYIDLNFRRL---GHMKVLIVFDDVT 140 (385)
Q Consensus 118 -----~~~~~l~~~l---~~k~~LlVlDdv~ 140 (385)
...-.+.+++ .++.+|+++||+.
T Consensus 228 r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 228 RIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1112233333 3789999999994
No 336
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=94.68 E-value=0.015 Score=52.55 Aligned_cols=60 Identities=10% Similarity=0.011 Sum_probs=39.0
Q ss_pred cCCeeEEEeec-CCceeeeeCccccCCCCCCcEEEecCc----ccCCCCC--CCeeEEEcCCCCCC-CCC
Q 044214 319 GQKIEDICLDM-SKVIEICLNTSTFTKMPKLRFLKFYSS----SFNGENK--CKISYLQDPGFAGV-KLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~-~~~~~~~~~~~~~~~~~~LrvL~l~~~----~lp~~i~--~~LryL~l~~~~~~-~lP 380 (385)
...++.+.+.. ... ....+..|.++++|++|+|+++ .+|..+. .+|++|++++|.+. .+|
T Consensus 75 l~~L~~L~L~~~n~l--~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 142 (313)
T 1ogq_A 75 LPYLNFLYIGGINNL--VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142 (313)
T ss_dssp CTTCSEEEEEEETTE--ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred CCCCCeeeCCCCCcc--cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC
Confidence 45566666653 321 2234556777788888888776 5666666 78888888887776 455
No 337
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.66 E-value=0.05 Score=49.74 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=24.6
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 49 SKGVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 49 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
-.+..+++|+|.+|+|||||.+.+...+.
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 34567999999999999999999987554
No 338
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=94.66 E-value=0.042 Score=47.71 Aligned_cols=61 Identities=18% Similarity=0.139 Sum_probs=42.2
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCC-CCC--CCeeEEEcCCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNG-ENK--CKISYLQDPGFAGVKLNN 381 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~-~i~--~~LryL~l~~~~~~~lP~ 381 (385)
..+++.+.+..... ..+.+..|.++++|++|+|+++ .+|. .+. .+|++|+++++.++.+|.
T Consensus 58 l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 124 (251)
T 3m19_A 58 LTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124 (251)
T ss_dssp CTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cccCCEEECCCCcC--CccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh
Confidence 45566666665542 3356667788888888888887 4443 334 788888888888888773
No 339
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.66 E-value=0.018 Score=48.11 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
...|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999863
No 340
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.65 E-value=0.035 Score=48.05 Aligned_cols=33 Identities=33% Similarity=0.652 Sum_probs=26.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 55 LGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 55 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
|+|.|-||+||||+|..++..+...-..+.-+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 666999999999999999998766544455554
No 341
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.65 E-value=0.03 Score=45.91 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHH
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
.....|+|+|.+|+|||||...+..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3456788999999999999998875
No 342
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.64 E-value=0.014 Score=48.05 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 044214 54 ALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~ 74 (385)
-|+|+|.+|+|||||...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999876
No 343
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.64 E-value=0.03 Score=46.88 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=26.7
Q ss_pred EEEEEE-cCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 53 YALGIW-GIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 53 ~vv~I~-G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
++|+|+ +-||+||||+|..++..+...-..+..+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 578787 67999999999999987765444455554
No 344
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.63 E-value=0.087 Score=44.78 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
..|++.|+.|+||||++..+.+.+..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 58999999999999999999998865
No 345
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.62 E-value=0.016 Score=50.21 Aligned_cols=23 Identities=30% Similarity=0.255 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.+++|+|+.|+|||||.+.++.-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 48999999999999999998763
No 346
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=94.61 E-value=0.032 Score=50.77 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=40.6
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc----ccCCCCC--CCeeEEEcCCCCC-CCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS----SFNGENK--CKISYLQDPGFAG-VKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~----~lp~~i~--~~LryL~l~~~~~-~~lP 380 (385)
..+++.+.+..+.. ....+..|.++++|+.|+|++| .+|..++ .+|++|++++|++ +.+|
T Consensus 228 l~~L~~L~Ls~n~~--~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 228 LPKLEELDLRGCTA--LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp CTTCCEEECTTCTT--CCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred CCCCCEEECcCCcc--hhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 44566666655432 2334556778888888888876 6777777 7888888888653 5566
No 347
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.59 E-value=0.011 Score=58.43 Aligned_cols=49 Identities=16% Similarity=0.007 Sum_probs=35.3
Q ss_pred CCCccccchhHHHHHHhhcCCCCC---------eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 28 KNQLVGVESTVEEIESLLGVESKG---------VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 28 ~~~~vGR~~~l~~l~~~L~~~~~~---------~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.+.++|.+.....+.-.+..+... -.-|.++|.+|+|||+||+.+++..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 367899998777776555532100 0158899999999999999998754
No 348
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.57 E-value=0.041 Score=51.84 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=28.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEE
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFL 86 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~ 86 (385)
...+++|+|.+|+||||++..++..+...-..+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 457899999999999999999998776553334444
No 349
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.54 E-value=0.02 Score=45.59 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 044214 54 ALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.|+++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999863
No 350
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.54 E-value=0.016 Score=49.69 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.+++|+|+.|+|||||.+.++.-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998763
No 351
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=94.54 E-value=0.017 Score=56.03 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=31.4
Q ss_pred CCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCCCC-CCeeEEEcCCCCCCC
Q 044214 320 QKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGENK-CKISYLQDPGFAGVK 378 (385)
Q Consensus 320 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~i~-~~LryL~l~~~~~~~ 378 (385)
.+++.+.+..+.. ..+.+..|.++++|++|+|+++ .+|.. . .+|++|++++|.+..
T Consensus 45 ~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~ 104 (520)
T 2z7x_B 45 SKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDA 104 (520)
T ss_dssp TTCCEEECCSSCC--CEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSS
T ss_pred ccccEEecCCCcc--CCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCcccc
Confidence 3445554444432 2334555666666666666665 45554 5 666666666666654
No 352
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.53 E-value=0.024 Score=46.56 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
...|+|+|.+|+|||||...+..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999999986
No 353
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=94.49 E-value=0.025 Score=51.10 Aligned_cols=60 Identities=8% Similarity=0.022 Sum_probs=33.7
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc----ccCCCCC--CCeeEEEcCCCCCC-CCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS----SFNGENK--CKISYLQDPGFAGV-KLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~----~lp~~i~--~~LryL~l~~~~~~-~lP 380 (385)
..+++.+.+..... ....+..|.++++|++|+|+++ .+|..+. .+|++|++++|.+. .+|
T Consensus 100 l~~L~~L~Ls~n~l--~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 166 (313)
T 1ogq_A 100 LTQLHYLYITHTNV--SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166 (313)
T ss_dssp CTTCSEEEEEEECC--EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CCCCCEEECcCCee--CCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC
Confidence 44566666554432 1234455666666666666665 3555555 66666666666665 444
No 354
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=94.48 E-value=0.05 Score=50.59 Aligned_cols=60 Identities=15% Similarity=0.224 Sum_probs=34.5
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCCC-C--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGEN-K--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~i-~--~~LryL~l~~~~~~~lP 380 (385)
..+++.+.+..... ..+++..|.++++|++|+|+++ .+|..+ . .+|++|++++|.+..+|
T Consensus 92 l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 92 AHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp CTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCCcCEEECCCCCC--CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 34455555544432 2344555666666666666665 555543 3 66777777766666654
No 355
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.47 E-value=0.057 Score=49.64 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=27.9
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 49 SKGVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 49 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.+...++.+.|-||+||||+|..++..+...-..+.-++
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 344567788899999999999999887654433344443
No 356
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.46 E-value=0.063 Score=45.55 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=26.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEE
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGD-FDGSCFL 86 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~ 86 (385)
..|++.|..|+||||+++.+.+.+... +..+++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 478999999999999999999987544 4344433
No 357
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.46 E-value=0.034 Score=45.17 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
....-|+|+|.+|+|||||...+...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999999864
No 358
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.024 Score=46.90 Aligned_cols=25 Identities=20% Similarity=0.108 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998863
No 359
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.43 E-value=0.033 Score=47.63 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=24.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhC
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISG 78 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 78 (385)
....|+|.|+.|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999997754
No 360
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.41 E-value=0.039 Score=53.00 Aligned_cols=30 Identities=17% Similarity=0.046 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCC
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDF 80 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 80 (385)
...+|.++|++|+||||+++.+++.....|
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 345889999999999999999998765444
No 361
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.40 E-value=0.016 Score=49.17 Aligned_cols=22 Identities=32% Similarity=0.160 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 044214 54 ALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
+++|+|+.|+|||||++.++..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999998864
No 362
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.40 E-value=0.025 Score=47.64 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=23.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.+|+|.|+.|+||||+|+.+++++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999999864
No 363
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.40 E-value=0.031 Score=45.18 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
..-|+|+|.+|+|||||...+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 45689999999999999999875
No 364
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.39 E-value=0.019 Score=49.75 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.+++|+|..|+|||||++.++.-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999864
No 365
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.37 E-value=0.047 Score=52.04 Aligned_cols=80 Identities=20% Similarity=0.181 Sum_probs=45.4
Q ss_pred EEEEEEcCCCchHHHHHH-HHHHHhhCCCCc-eEEEeeccccccCCCChHHHHHHHHHHHhCC--------CCCC-----
Q 044214 53 YALGIWGIGGIGKTTIAR-AIFDKISGDFDG-SCFLENVREESQIPGGLSCLRQKLLSNLLKD--------KNVM----- 117 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~-~~~~~~~~~f~~-~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~----- 117 (385)
+.++|.|..|+|||+||. .+.++ .+-+. ++++- +++. ...+.++.+.+...-... .++.
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~--~~~dv~~V~~~-IGeR---~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~ 236 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ--RDSGIKCIYVA-IGQK---ASTISNVVRKLEEHGALANTIVVVATASESAALQY 236 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT--SSSSCEEEEEE-ESCC---HHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh--ccCCceEEEEE-ecCC---hHHHHHHHHHHhhcCcccceEEEEECCCCChHHHH
Confidence 468899999999999974 55554 22333 33443 3322 144556666654321111 1111
Q ss_pred -------chHHHHHHHhCCceEEEEEeCCC
Q 044214 118 -------PYIDLNFRRLGHMKVLIVFDDVT 140 (385)
Q Consensus 118 -------~~~~~l~~~l~~k~~LlVlDdv~ 140 (385)
..++.++. +++.+||++||+.
T Consensus 237 ~a~~~a~tiAEyfrd--~G~dVLli~Dslt 264 (513)
T 3oaa_A 237 LAPYAGCAMGEYFRD--RGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHHHH--TTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHh--cCCCEEEEecChH
Confidence 22333333 5899999999994
No 366
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=94.36 E-value=0.061 Score=47.21 Aligned_cols=61 Identities=18% Similarity=0.167 Sum_probs=40.7
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCC-CCC--CCeeEEEcCCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNG-ENK--CKISYLQDPGFAGVKLNN 381 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~-~i~--~~LryL~l~~~~~~~lP~ 381 (385)
..+++.+.+..... ..++...|.++++|+.|+|+++ .+|. .+. .+|++|++++|.++.+|.
T Consensus 84 l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 150 (270)
T 2o6q_A 84 LKNLETLWVTDNKL--QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150 (270)
T ss_dssp CTTCCEEECCSSCC--CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCCEEECCCCcC--CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH
Confidence 44566666655442 3455667778888888888877 3333 344 788888888888887773
No 367
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.35 E-value=0.023 Score=46.78 Aligned_cols=23 Identities=30% Similarity=0.709 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
-.|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999863
No 368
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.35 E-value=0.069 Score=46.09 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=27.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEE
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGD-FDGSCFL 86 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~ 86 (385)
...|+|.|+.|+||||+++.+.+.+... +..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 3589999999999999999999977543 4434443
No 369
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=94.34 E-value=0.05 Score=56.29 Aligned_cols=43 Identities=19% Similarity=0.167 Sum_probs=26.6
Q ss_pred eeCccccCCCCCCcEEEecCc----ccCCCCC--CCeeEEEcCCCCCCC
Q 044214 336 CLNTSTFTKMPKLRFLKFYSS----SFNGENK--CKISYLQDPGFAGVK 378 (385)
Q Consensus 336 ~~~~~~~~~~~~LrvL~l~~~----~lp~~i~--~~LryL~l~~~~~~~ 378 (385)
.+.+..|.++++|++|+|+++ ..|..++ .+|++|+|++|.+..
T Consensus 63 ~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 111 (844)
T 3j0a_A 63 TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD 111 (844)
T ss_dssp EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc
Confidence 344556666666666666665 2355666 667777776666654
No 370
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=94.34 E-value=0.057 Score=49.77 Aligned_cols=43 Identities=23% Similarity=0.205 Sum_probs=20.9
Q ss_pred CccccCCCCCCcEEEecCc---ccCCCC----C--CCeeEEEcCCCCCCCCC
Q 044214 338 NTSTFTKMPKLRFLKFYSS---SFNGEN----K--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 338 ~~~~~~~~~~LrvL~l~~~---~lp~~i----~--~~LryL~l~~~~~~~lP 380 (385)
.+..|.++.+|+.|+|+++ .+|..+ . .+|++|+|+++.++.+|
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 128 DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 3444555555555555554 333332 2 45555555555555554
No 371
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.32 E-value=0.13 Score=51.04 Aligned_cols=25 Identities=28% Similarity=0.236 Sum_probs=21.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+.+.|.|.+|.||||++..+...+.
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999998887554
No 372
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=94.32 E-value=0.053 Score=51.89 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=20.3
Q ss_pred CccccCCCCCCcEEEecCc---c-cCCCCC--CCeeEEEcCCCCCCCCC
Q 044214 338 NTSTFTKMPKLRFLKFYSS---S-FNGENK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 338 ~~~~~~~~~~LrvL~l~~~---~-lp~~i~--~~LryL~l~~~~~~~lP 380 (385)
.+..|.++++|++|+|+++ . .|..++ .+|++|+|++|.++.+|
T Consensus 48 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 96 (477)
T 2id5_A 48 NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96 (477)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccC
Confidence 3444455555555555544 1 133444 45555555555554444
No 373
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=94.32 E-value=0.053 Score=47.61 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=38.7
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCC-CC--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGE-NK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~-i~--~~LryL~l~~~~~~~lP 380 (385)
..+++.+.+..... ..++...|.++++|++|+|+++ .+|.. +. .+|++|+++++.++.+|
T Consensus 60 l~~L~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 125 (270)
T 2o6q_A 60 LTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP 125 (270)
T ss_dssp CTTCCEEECCSSCC--SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCCCCEEECCCCcc--CeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeC
Confidence 44566666655432 2455666777777788877776 44433 33 67888888877777766
No 374
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.31 E-value=0.024 Score=49.52 Aligned_cols=23 Identities=22% Similarity=0.409 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.+++|+|..|+|||||.+.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 375
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.31 E-value=0.041 Score=52.55 Aligned_cols=83 Identities=20% Similarity=0.139 Sum_probs=45.3
Q ss_pred EEEEEEcCCCchHHHHHH-HHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCC--------CCCC------
Q 044214 53 YALGIWGIGGIGKTTIAR-AIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKD--------KNVM------ 117 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~-~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~------ 117 (385)
+.++|.|.+|+|||+||. .++++.. -+..+.+..+++. ...+.++.+.+...-... .++.
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGeR---~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQKG--QDVICIYVAIGQK---QSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGGS--CSEEEEEEEESCC---HHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhhc--CCcEEEEEECCCc---chHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 468899999999999965 5666542 3433222223322 134555666655421111 1111
Q ss_pred --chHHHHHHHh--CCceEEEEEeCCC
Q 044214 118 --PYIDLNFRRL--GHMKVLIVFDDVT 140 (385)
Q Consensus 118 --~~~~~l~~~l--~~k~~LlVlDdv~ 140 (385)
...-.+.+++ .++.+|+++||+.
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 0111222222 5799999999994
No 376
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.29 E-value=0.02 Score=50.41 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.+++|+|+.|+|||||.+.++.-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998864
No 377
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.28 E-value=0.02 Score=50.75 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.+++|+|+.|+|||||++.++.-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999998763
No 378
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.28 E-value=0.047 Score=46.85 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGD 79 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 79 (385)
...|+|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 3589999999999999999999977543
No 379
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=94.27 E-value=0.061 Score=52.60 Aligned_cols=40 Identities=13% Similarity=0.018 Sum_probs=18.2
Q ss_pred CccccCCCCCCcEEEecCc---ccCC-CCC--CCeeEEEcCCCCCC
Q 044214 338 NTSTFTKMPKLRFLKFYSS---SFNG-ENK--CKISYLQDPGFAGV 377 (385)
Q Consensus 338 ~~~~~~~~~~LrvL~l~~~---~lp~-~i~--~~LryL~l~~~~~~ 377 (385)
++..|.++++|++|+|+++ .+|. .++ .+|++|++++|.++
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 137 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCC
T ss_pred CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccc
Confidence 3344444455555555444 2222 233 45555555555444
No 380
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=94.26 E-value=0.073 Score=46.80 Aligned_cols=61 Identities=13% Similarity=0.081 Sum_probs=47.6
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCC-CC--CCeeEEEcCCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGE-NK--CKISYLQDPGFAGVKLNN 381 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~-i~--~~LryL~l~~~~~~~lP~ 381 (385)
..+++.+.+..+.. ..+++..|.++++|+.|+|+++ .+|.. ++ .+|++|++++|.+..+|.
T Consensus 132 l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 132 LTNLTYLNLAHNQL--QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp CTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCCCCEEECCCCcc--CccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 56778888776653 3566777899999999999998 45544 34 899999999999988873
No 381
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=94.25 E-value=0.056 Score=49.78 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=49.4
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---cc-CCCCC--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SF-NGENK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~l-p~~i~--~~LryL~l~~~~~~~lP 380 (385)
..+++.+.+..... ..+++..|..+.+|++|+|+++ .+ |..+. .+|++|+|+++.++.+|
T Consensus 87 l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 87 VPNLRYLDLSSNHL--HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp CTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CCCCCEEECCCCcC--CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 56788888777653 4567788999999999999998 33 56677 89999999999999988
No 382
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=94.24 E-value=0.041 Score=51.09 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=29.1
Q ss_pred CCCeEEEEEEc-CCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 49 SKGVYALGIWG-IGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 49 ~~~~~vv~I~G-~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
..+.++|+|+| -||+||||+|..++..+...-..+..+.
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 34578898886 8999999999999987654433455554
No 383
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.24 E-value=0.082 Score=46.69 Aligned_cols=52 Identities=19% Similarity=0.118 Sum_probs=36.0
Q ss_pred hhHHHHHHhhc--CCCCCeEEEEEEcC-CCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 36 STVEEIESLLG--VESKGVYALGIWGI-GGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 36 ~~l~~l~~~L~--~~~~~~~vv~I~G~-gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
+.++.|...|. ......++|+|+|. ||+||||+|..++..+...-..+..+.
T Consensus 64 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 64 EKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp HHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 44555555443 22345689999975 899999999999987765544566665
No 384
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.23 E-value=0.023 Score=49.41 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
-.+++|+|..|+|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999876
No 385
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.22 E-value=0.025 Score=49.89 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.+++|+|..|+|||||.+.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 386
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.20 E-value=0.029 Score=45.53 Aligned_cols=24 Identities=33% Similarity=0.232 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
+...|+|+|.+|+|||||...+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999999876
No 387
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.20 E-value=0.063 Score=46.25 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=27.7
Q ss_pred CeEEEEEEc-CCCchHHHHHHHHHHHhhCC-CCceEEEe
Q 044214 51 GVYALGIWG-IGGIGKTTIARAIFDKISGD-FDGSCFLE 87 (385)
Q Consensus 51 ~~~vv~I~G-~gGiGKTtLA~~~~~~~~~~-f~~~~w~~ 87 (385)
..++|+|+| -||+||||+|..++..+... -..+..+.
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 456787775 59999999999999988765 44455554
No 388
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.19 E-value=0.022 Score=49.43 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.+++|+|+.|+|||||.+.++.-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998763
No 389
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.18 E-value=0.062 Score=51.88 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=32.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKL 106 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~l 106 (385)
+.++|.|..|+|||+|+.++++.. +-+..+++- +++. .....++.+.+
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~~--~~~~~V~~~-iGER---~~Ev~e~~~~~ 275 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKWS--DAQVVIYIG-CGER---GNEMTDVLEEF 275 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHHS--SCSEEEEEE-CCSS---SSHHHHHHHHT
T ss_pred CeEEeecCCCCCHHHHHHHHHhcc--CCCEEEEEE-eccc---HHHHHHHHHHH
Confidence 478999999999999999988753 224455554 3322 24555666554
No 390
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.18 E-value=0.029 Score=47.40 Aligned_cols=25 Identities=20% Similarity=0.108 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
....|+|+|.+|+|||||...+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999864
No 391
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.17 E-value=0.019 Score=50.12 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
.+++|+|..|+|||||.+.++.-+.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4899999999999999999886543
No 392
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.17 E-value=0.042 Score=43.85 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
..-|+|+|.+|+|||||...+..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 34688999999999999999886
No 393
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.17 E-value=0.021 Score=49.14 Aligned_cols=26 Identities=27% Similarity=0.157 Sum_probs=22.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
....+|+|.|..|+||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34579999999999999999998875
No 394
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.17 E-value=0.022 Score=50.30 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.+++|+|+.|+|||||++.++.-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 48999999999999999999763
No 395
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.16 E-value=0.034 Score=51.14 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.-.++.|+|.+|+|||||++.++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 396
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=94.15 E-value=0.045 Score=49.65 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=44.4
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCCCC--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGENK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~i~--~~LryL~l~~~~~~~lP 380 (385)
..+++.+.+..... ..+.+..|..+++|+.|+|+++ .+|..+. .+|++|+++++.++.+|
T Consensus 216 l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 216 YSKLYRLGLGHNQI--RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp CTTCSCCBCCSSCC--CCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred CCCCCEEECCCCcC--CcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccC
Confidence 34556555554432 3355567888889999999887 7788777 88999999999888887
No 397
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=94.15 E-value=0.062 Score=47.87 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=47.0
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCCC-C--CCeeEEEcCCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGEN-K--CKISYLQDPGFAGVKLNN 381 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~i-~--~~LryL~l~~~~~~~lP~ 381 (385)
..+++.+.+..... ..+++..|.++.+|+.|+|+++ .+|... . .+|++|+++++.++.+|.
T Consensus 99 l~~L~~L~l~~N~l--~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 165 (290)
T 1p9a_G 99 LPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165 (290)
T ss_dssp CTTCCEEECCSSCC--CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred CCCCCEEECCCCcC--cccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH
Confidence 45677777766643 3566778999999999999988 555543 4 899999999999999983
No 398
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.14 E-value=0.028 Score=50.56 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
-.+++|+|+.|+|||||++.+..-+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3589999999999999999999866
No 399
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.14 E-value=0.028 Score=44.93 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 044214 54 ALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~ 74 (385)
-|+|+|.+|+|||||...+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999999986
No 400
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.13 E-value=0.037 Score=45.39 Aligned_cols=24 Identities=17% Similarity=0.136 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
..--|+|+|.+|+|||||...+..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEEECCCCCCHHHHHHHHhc
Confidence 345688999999999999999986
No 401
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.13 E-value=0.023 Score=49.89 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.+++|+|+.|+|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998764
No 402
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.13 E-value=0.023 Score=49.54 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.+++|+|..|+|||||.+.++.-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998763
No 403
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=94.13 E-value=0.041 Score=48.28 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=32.2
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCCCCCCeeEEEcCCCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGENKCKISYLQDPGFAGVKLNNF 382 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~i~~~LryL~l~~~~~~~lP~~ 382 (385)
..+++.+.+..+... .+++ |.++++|+.|+|+++ .+|.....+|++|++++|.++.+|.|
T Consensus 62 l~~L~~L~L~~N~i~--~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N~l~~~~~l 124 (263)
T 1xeu_A 62 FTNLKELHLSHNQIS--DLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSL 124 (263)
T ss_dssp CTTCCEEECCSSCCC--CCGG--GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECCSSCCSBSGGG
T ss_pred CCCCCEEECCCCccC--CChh--hccCCCCCEEECCCCccCCcCccccCcccEEEccCCccCCChhh
Confidence 445555555544321 1222 666667777777666 33321116677777777766666543
No 404
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.12 E-value=0.028 Score=44.82 Aligned_cols=22 Identities=27% Similarity=0.661 Sum_probs=19.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
--|+|+|.+|+|||||...+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3588999999999999999886
No 405
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.12 E-value=0.027 Score=51.13 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
+.++++|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999864
No 406
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.11 E-value=0.023 Score=48.88 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=21.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.+++|+|+.|+|||||.+.++..+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998743
No 407
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=94.11 E-value=0.065 Score=49.07 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=48.6
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---cc-CCCCC--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SF-NGENK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~l-p~~i~--~~LryL~l~~~~~~~lP 380 (385)
.+.++.+.+..... ..++...|.++++|+.|+|+++ .+ |..+. .+|++|++++|.++.+|
T Consensus 51 ~~~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (353)
T 2z80_A 51 TEAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116 (353)
T ss_dssp CTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred cccCcEEECCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC
Confidence 34678888776653 3467778999999999999998 33 45677 89999999999999988
No 408
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.11 E-value=0.029 Score=46.36 Aligned_cols=25 Identities=16% Similarity=0.470 Sum_probs=21.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHH
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
.+...|+|+|.+|+|||||...+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456789999999999999999875
No 409
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.10 E-value=0.023 Score=50.02 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.+++|+|+.|+|||||.+.++.-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 48999999999999999998864
No 410
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.10 E-value=0.028 Score=46.32 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
..--|+|+|.+|+|||||...+.+
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 345688999999999999998876
No 411
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.10 E-value=0.038 Score=44.86 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHH
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
.....|+|+|.+|+|||||...+..
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh
Confidence 3456789999999999999999886
No 412
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.10 E-value=0.029 Score=45.12 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
.-.|+|+|.+|+|||||...+..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 44688999999999999999886
No 413
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.09 E-value=0.026 Score=47.95 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.+|+|+|+.|+||||+++.+.+.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 378999999999999999998864
No 414
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.08 E-value=0.016 Score=50.96 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+...|+|.|..|+||||+|+.+++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999887653
No 415
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=94.07 E-value=0.065 Score=52.17 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=35.5
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCC-CC--CCeeEEEcCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGE-NK--CKISYLQDPGFAGVKL 379 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~-i~--~~LryL~l~~~~~~~l 379 (385)
..+++.+.+..+.. ..+++..|.++++|++|+|+++ .+|.. ++ .+|++|++++|.++.+
T Consensus 49 l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 113 (549)
T 2z81_A 49 CANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL 113 (549)
T ss_dssp CTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSS
T ss_pred CCcccEEECCCCCc--CccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccccc
Confidence 34455555554432 2345566777777777777776 33332 44 6777777777777644
No 416
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.07 E-value=0.071 Score=51.01 Aligned_cols=85 Identities=18% Similarity=0.097 Sum_probs=45.9
Q ss_pred EEEEEEcCCCchHHHHHH-HHHHHhhC------CCCceEEEeeccccccCCCChHHHHHHHHHHHh--------CCCCCC
Q 044214 53 YALGIWGIGGIGKTTIAR-AIFDKISG------DFDGSCFLENVREESQIPGGLSCLRQKLLSNLL--------KDKNVM 117 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~-~~~~~~~~------~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~--------~~~~~~ 117 (385)
+.++|.|.+|+|||+||. .++++... +-+..+.+..+++. +..+.++.+.+...-. ...++.
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR---~~Ev~~~~~~~~~~g~m~~tvvV~atad~p 239 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQK---RSTVAQLVKRLTDADAMKYTIVVSATASDA 239 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCC---HHHHHHHHHHHHHTTCGGGEEEEEECTTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCC---cHHHHHHHHHHHhcCCcccceEEEECCCCC
Confidence 468899999999999965 56665541 23432333323322 1345556665554210 111111
Q ss_pred --------chHHHHHHHh--CCceEEEEEeCCC
Q 044214 118 --------PYIDLNFRRL--GHMKVLIVFDDVT 140 (385)
Q Consensus 118 --------~~~~~l~~~l--~~k~~LlVlDdv~ 140 (385)
...-.+.+++ .++.+|+++||+.
T Consensus 240 ~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 240 APLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 1111222222 5799999999994
No 417
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.06 E-value=0.03 Score=44.72 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=19.1
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 044214 55 LGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 55 v~I~G~gGiGKTtLA~~~~~~ 75 (385)
|+|+|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 418
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.06 E-value=0.02 Score=48.75 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.+++|+|+.|+|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999998764
No 419
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.05 E-value=0.057 Score=49.65 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+..+|+|+|.+|+|||||...+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 467999999999999999999997553
No 420
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.04 E-value=0.03 Score=44.85 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 044214 54 ALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~ 74 (385)
-|+|+|.+|+|||||...+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999886
No 421
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.02 E-value=0.027 Score=45.85 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999863
No 422
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.01 E-value=0.031 Score=44.87 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
--|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999863
No 423
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.99 E-value=0.094 Score=57.63 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=29.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
-.+|.|.|.+|+||||||.+++......-..++|++
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 358999999999999999999987654434566765
No 424
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.99 E-value=0.025 Score=49.69 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.+++|+|..|+|||||.+.++.-+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 489999999999999999998643
No 425
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.99 E-value=0.033 Score=47.76 Aligned_cols=24 Identities=38% Similarity=0.391 Sum_probs=21.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
..++|.|++|+||||+|+.+++++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 426
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=93.99 E-value=0.1 Score=48.00 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=28.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh--CCCCceEEEe
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKIS--GDFDGSCFLE 87 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~w~~ 87 (385)
...++...|-||+||||+|..++..+. ..-..+.-++
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD 55 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 345777889999999999999998877 5544555554
No 427
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.98 E-value=0.028 Score=45.03 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 044214 54 ALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~ 74 (385)
-|+|+|.+|+|||||...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998864
No 428
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=93.98 E-value=0.06 Score=51.03 Aligned_cols=58 Identities=14% Similarity=0.133 Sum_probs=32.8
Q ss_pred CCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc----ccCCCCC--CCeeEEEcCCCCCCC
Q 044214 320 QKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS----SFNGENK--CKISYLQDPGFAGVK 378 (385)
Q Consensus 320 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~----~lp~~i~--~~LryL~l~~~~~~~ 378 (385)
.+++.+.+..+.. ...+++..|.++++|++|+|+++ ..|..++ .+|++|++++|.++.
T Consensus 54 ~~L~~L~L~~n~~-~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 117 (455)
T 3v47_A 54 QDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDG 117 (455)
T ss_dssp TTCCEEECCCCST-TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBT
T ss_pred ccccEEECcCCcc-cceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCc
Confidence 3444554444422 12345556666777777777666 2255565 677777777766653
No 429
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.97 E-value=0.025 Score=49.53 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.+++|.|+.|+|||||.+.++.-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998763
No 430
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=93.97 E-value=0.063 Score=52.65 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=42.4
Q ss_pred CCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---cc-CCCCC--CCeeEEEcCCCCCCCCCC
Q 044214 320 QKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SF-NGENK--CKISYLQDPGFAGVKLNN 381 (385)
Q Consensus 320 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~l-p~~i~--~~LryL~l~~~~~~~lP~ 381 (385)
..++.+.+..... ..+++..|.++++|++|+|+++ .+ |+.+. .+|++|++++|.++.+|.
T Consensus 52 ~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 117 (562)
T 3a79_B 52 PRTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC 117 (562)
T ss_dssp TTCCEEECCSSCC--CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS
T ss_pred CCcCEEECCCCCc--cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc
Confidence 4566666665542 3455667888888888888877 33 55666 788888888888887774
No 431
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.95 E-value=0.031 Score=46.09 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
.--|+|+|.+|+|||||...+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHh
Confidence 45688999999999999999886
No 432
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.94 E-value=0.026 Score=49.95 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.+++|+|..|+|||||++.++.-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998763
No 433
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=93.94 E-value=0.075 Score=47.67 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=34.9
Q ss_pred hhHHHHHHhhc--CCCCCeEEEEEEcC-CCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 36 STVEEIESLLG--VESKGVYALGIWGI-GGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 36 ~~l~~l~~~L~--~~~~~~~vv~I~G~-gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
+.++.|...|. ......++|+|+|. ||+||||+|..++..+...-..+..+.
T Consensus 86 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 86 EAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp HHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 34444544343 12345679999986 899999999999987755444555554
No 434
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=93.93 E-value=0.073 Score=44.15 Aligned_cols=57 Identities=16% Similarity=0.252 Sum_probs=46.4
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc----ccCCCCC--CCeeEEEcCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS----SFNGENK--CKISYLQDPGFAGV 377 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~----~lp~~i~--~~LryL~l~~~~~~ 377 (385)
..+++.+.+..... ..+++..|.++++|++|+|+++ ..|..+. .+|++|+++++++.
T Consensus 77 l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 77 ASHIQELQLGENKI--KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CTTCCEEECCSCCC--CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cccCCEEECCCCcC--CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 56788888877653 4567788999999999999998 3467777 89999999999875
No 435
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.93 E-value=0.025 Score=53.18 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999999987
No 436
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.92 E-value=0.043 Score=54.31 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
+..+|.|.|++|+||||+|+.+.+.+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999763
No 437
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.92 E-value=0.032 Score=46.33 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
..-|+|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999999875
No 438
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.92 E-value=0.042 Score=44.09 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
--|+|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3588999999999999999863
No 439
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=93.91 E-value=0.042 Score=54.08 Aligned_cols=59 Identities=10% Similarity=0.045 Sum_probs=47.1
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---cc--CCCCC--CCeeEEEcCCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SF--NGENK--CKISYLQDPGFAGVKLNN 381 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~l--p~~i~--~~LryL~l~~~~~~~lP~ 381 (385)
..+++.+.+..+.... + + .|.++++|++|+|+++ .+ |..++ .+|++|++++|++..+|.
T Consensus 485 l~~L~~L~Ls~N~l~~--l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 485 LRCLEVLQASDNALEN--V-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CTTCCEEECCSSCCCC--C-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCEEECCCCCCCC--C-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 5677888887765432 3 3 7899999999999988 44 77787 899999999999988874
No 440
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.90 E-value=0.036 Score=45.15 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
+-|.|.|.+|+||||+|.++..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46889999999999999999874
No 441
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.89 E-value=0.06 Score=50.39 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=26.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhC------CCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISG------DFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~w~~ 87 (385)
-.++.|+|.+|+|||||+..++-.... .-..++|+.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid 219 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence 358999999999999999988743321 224577776
No 442
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.87 E-value=0.054 Score=47.54 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=25.6
Q ss_pred HHHHhhcCCCCCeEEEEEEcCCCchHHHHHHHHHH
Q 044214 40 EIESLLGVESKGVYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 40 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
++.+.+.....+...|+|+|.+|+|||||...+..
T Consensus 24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHT
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 33333433333556789999999999999999986
No 443
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.87 E-value=0.067 Score=45.18 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=25.3
Q ss_pred EEEE-EcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 54 ALGI-WGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 54 vv~I-~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
+|+| .+-||+||||+|..++..+...- .+..+.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD 35 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLID 35 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEE
Confidence 4555 57899999999999999876655 555554
No 444
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.87 E-value=0.034 Score=44.53 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=19.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
--|+|+|.+|+|||||...+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4688999999999999999986
No 445
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.86 E-value=0.14 Score=57.16 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=30.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
-.++.|+|.+|+||||||.+++......-..++|++
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 458999999999999999999987765545677776
No 446
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.85 E-value=0.072 Score=52.73 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=40.3
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCCC-C--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGEN-K--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~i-~--~~LryL~l~~~~~~~lP 380 (385)
...++.+.+..+. ...+++..|.++++|++|+|+++ .+|..+ + .+|++|++++|.+..+|
T Consensus 98 l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 163 (597)
T 3oja_B 98 AHTIQKLYMGFNA--IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 163 (597)
T ss_dssp CTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCCCCEEECCCCc--CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC
Confidence 4556666665554 23456666777788888888777 566554 4 77888888888777765
No 447
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.84 E-value=0.034 Score=46.05 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
..|+|+|.+|+|||||...+.+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3688999999999999999886
No 448
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.83 E-value=0.041 Score=44.13 Aligned_cols=22 Identities=27% Similarity=0.800 Sum_probs=19.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
--|+|+|.+|+|||||...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4578999999999999999986
No 449
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.83 E-value=0.033 Score=45.86 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
...|+|+|.+|+|||||...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999999864
No 450
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.83 E-value=0.047 Score=43.74 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
--|+|+|.+|+|||||...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4688999999999999999885
No 451
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.82 E-value=0.027 Score=45.84 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
.--|+|+|.+|+|||||...+..
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34688999999999999999986
No 452
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.82 E-value=0.13 Score=49.85 Aligned_cols=52 Identities=8% Similarity=-0.099 Sum_probs=37.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCC-CCceEEEeeccccccCCCChHHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGD-FDGSCFLENVREESQIPGGLSCLRQKLLSNL 110 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l 110 (385)
-.++.|.|.+|+||||||.+++...... -..++|++ . . .+..++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s-~-----E-~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM-L-----E-ESVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE-S-----S-SCHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe-c-----c-CCHHHHHHHHHHHH
Confidence 3589999999999999999999877554 34566765 2 1 44556666665543
No 453
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.82 E-value=0.028 Score=49.55 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.+++|+|..|+|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999998763
No 454
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=93.81 E-value=0.095 Score=49.60 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=19.0
Q ss_pred CccccCCCCCCcEEEecCc---ccCCCCC-CCeeEEEcCCCCCCCC
Q 044214 338 NTSTFTKMPKLRFLKFYSS---SFNGENK-CKISYLQDPGFAGVKL 379 (385)
Q Consensus 338 ~~~~~~~~~~LrvL~l~~~---~lp~~i~-~~LryL~l~~~~~~~l 379 (385)
+...|.++++|+.|+|+++ .+|..-. .+|++|+|++|.++.+
T Consensus 177 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp CTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE
T ss_pred CcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCcc
Confidence 3334444555555555544 3332111 4555555555554443
No 455
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=93.80 E-value=0.11 Score=45.49 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=30.0
Q ss_pred CCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCC-CCC--CCeeEEEcCCCCCCC
Q 044214 320 QKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNG-ENK--CKISYLQDPGFAGVK 378 (385)
Q Consensus 320 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~-~i~--~~LryL~l~~~~~~~ 378 (385)
.+++.+.+..... ..+.+..|.++.+|+.|+++++ .++. .++ .+|++|+++++.++.
T Consensus 76 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 76 SHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp TTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred cCCCEEECCCCcc--CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence 3444544444332 2334455666666666666655 2222 344 566666666666655
No 456
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.79 E-value=0.038 Score=52.86 Aligned_cols=83 Identities=18% Similarity=0.111 Sum_probs=45.5
Q ss_pred EEEEEEcCCCchHHHHHH-HHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHh--------CCCCCC------
Q 044214 53 YALGIWGIGGIGKTTIAR-AIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLL--------KDKNVM------ 117 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~-~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~--------~~~~~~------ 117 (385)
+.++|.|.+|+|||+||. .++++.. -+..+.+..+++. ...+.++.+.+...-. ...++.
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~~--~dv~~V~~~IGeR---~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQKG--QGVYCIYVAIGQK---KSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTTT--TTEEEEEEEESCC---HHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCCC---cHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 468899999999999965 5666542 3433222223322 1445566666654211 111111
Q ss_pred --chHHHHHHHh--CCceEEEEEeCCC
Q 044214 118 --PYIDLNFRRL--GHMKVLIVFDDVT 140 (385)
Q Consensus 118 --~~~~~l~~~l--~~k~~LlVlDdv~ 140 (385)
...-.+.+++ .++.+|+++||+.
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 1111222222 5799999999994
No 457
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.79 E-value=0.029 Score=49.90 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.+++|+|..|+|||||.+.++..+
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999988643
No 458
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.78 E-value=0.046 Score=45.61 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
....|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567899999999999999998863
No 459
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.77 E-value=0.046 Score=44.22 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
....|+|+|.+|+|||||...+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3567899999999999999999863
No 460
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.76 E-value=0.039 Score=44.76 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHH
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
+...-|+|+|.+|+|||||...+..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 3456789999999999999999875
No 461
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.76 E-value=0.029 Score=49.09 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.+++|+|..|+|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 462
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.74 E-value=0.041 Score=44.54 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
..-|+|+|.+|+|||||...+..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 45689999999999999999975
No 463
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=93.74 E-value=0.07 Score=50.75 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=33.9
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCC-CC--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGE-NK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~-i~--~~LryL~l~~~~~~~lP 380 (385)
..+++.+.+..+.. ..+.+..|.++.+|+.|+|+++ .+|.. +. .+|++|++++|.++.+|
T Consensus 98 l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 163 (452)
T 3zyi_A 98 LHHLEVLQLGRNSI--RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP 163 (452)
T ss_dssp CTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC
T ss_pred CCCCCEEECCCCcc--CCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeC
Confidence 34455555554432 2344556666666666666665 34433 33 56666666666666555
No 464
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.74 E-value=0.048 Score=43.80 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
...|+|+|.+|+|||||...+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35688999999999999999975
No 465
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.73 E-value=0.039 Score=44.93 Aligned_cols=24 Identities=17% Similarity=0.392 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
....|+|+|.+|+|||||...+.+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 345789999999999999999985
No 466
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.73 E-value=0.048 Score=44.45 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=20.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHH
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
.....|+|+|.+|+|||||...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456788999999999999988764
No 467
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.71 E-value=0.036 Score=46.12 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIF 73 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~ 73 (385)
....|+|+|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999885
No 468
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.70 E-value=0.056 Score=43.76 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
..--|+|+|.+|+|||||...+..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 345688999999999999999875
No 469
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.69 E-value=0.039 Score=52.36 Aligned_cols=83 Identities=16% Similarity=0.067 Sum_probs=48.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhCCC----CceEEEeeccccccCCCChHHHHHHHHHHHhC--------CCCCC---
Q 044214 53 YALGIWGIGGIGKTTIARAIFDKISGDF----DGSCFLENVREESQIPGGLSCLRQKLLSNLLK--------DKNVM--- 117 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f----~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~--------~~~~~--- 117 (385)
+.++|.|.+|+|||+|+..+++...... +..+++- +++.. ..+.++.+++...-.. ..++.
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~-iGER~---~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~ 228 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAA-MGITN---EEAQYFMSDFEKTGALERAVVFLNLADDPAVE 228 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEE-EEECH---HHHHHHHHHHHHHSGGGGEEEEEEETTSCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEE-ccCCc---HHHHHHHHHHHhccCccceEEEEECCCCCHHH
Confidence 4678899999999999999998754321 2333433 33321 4456666666543111 11111
Q ss_pred -----chHHHHHHHh---CCceEEEEEeCC
Q 044214 118 -----PYIDLNFRRL---GHMKVLIVFDDV 139 (385)
Q Consensus 118 -----~~~~~l~~~l---~~k~~LlVlDdv 139 (385)
...-.+.+++ .++.+|+++||+
T Consensus 229 r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 229 RIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1112233333 369999999998
No 470
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.69 E-value=0.049 Score=45.77 Aligned_cols=24 Identities=17% Similarity=0.136 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
...-|+|+|.+|+|||||...+..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Confidence 445788999999999999999986
No 471
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.69 E-value=0.061 Score=47.41 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=21.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHH
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
.....|+++|.+|+|||||...+..
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhC
Confidence 3456789999999999999999986
No 472
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=93.69 E-value=0.1 Score=46.10 Aligned_cols=60 Identities=10% Similarity=0.023 Sum_probs=41.2
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc----ccCCCCC--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS----SFNGENK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~----~lp~~i~--~~LryL~l~~~~~~~lP 380 (385)
..+++.+.+..... ..++...|.++++|+.|+|+++ ..|..+. .+|++|++++|.+..+|
T Consensus 152 l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 152 LGNLTHLFLHGNRI--SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp CTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCCccEEECCCCcc--cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 45566666665542 3455666778888888888877 2356666 78888888888877766
No 473
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.69 E-value=0.038 Score=48.84 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 044214 54 ALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998743
No 474
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.68 E-value=0.06 Score=43.90 Aligned_cols=25 Identities=36% Similarity=0.679 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
..-.|+|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4557889999999999999999863
No 475
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=93.68 E-value=0.31 Score=44.37 Aligned_cols=95 Identities=9% Similarity=-0.057 Sum_probs=56.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh-CCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCC
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKIS-GDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGH 129 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~ 129 (385)
-.++..++|..|.||++.+..+.+.+. ..|+....+. .. .. .++.++...+... -+-+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~~-~~~~~l~~~~~~~----------------plf~ 75 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-ID---PN-TDWNAIFSLCQAM----------------SLFA 75 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CC---TT-CCHHHHHHHHHHH----------------HHCC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ec---CC-CCHHHHHHHhcCc----------------CCcc
Confidence 456899999999999999999998653 3454221121 11 12 4455444433111 1234
Q ss_pred ceEEEEEeCCCC---hhhhhHhhccCCCCCCCcEEEEEec
Q 044214 130 MKVLIVFDDVTC---FSQLESLMGSLDWLTPVSRIILTTR 166 (385)
Q Consensus 130 k~~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~ilvTtR 166 (385)
++-++|+|+++. ....+.+...+....+++.+|+++.
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~ 115 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGN 115 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEES
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 566888899854 3455666655554445776766653
No 476
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.68 E-value=0.051 Score=44.40 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
...-|+|+|.+|+|||||...+..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 345788999999999999999986
No 477
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.64 E-value=0.039 Score=45.21 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=19.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
--|+|+|.+|+|||||...+.+
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4588999999999999999986
No 478
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.64 E-value=0.031 Score=45.87 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 044214 54 ALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~ 74 (385)
-|+|+|.+|+|||||...+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999886
No 479
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=93.64 E-value=0.14 Score=45.49 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=36.2
Q ss_pred hhHHHHHHhhc--CCCCCeEEEEEEcC-CCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 36 STVEEIESLLG--VESKGVYALGIWGI-GGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 36 ~~l~~l~~~L~--~~~~~~~vv~I~G~-gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
+.++.|...|. ....+.++|+|+|. ||+||||+|..++..+...-..++.+.
T Consensus 74 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 74 EAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 45556655553 22345678888775 899999999999998776655566665
No 480
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=93.63 E-value=0.049 Score=45.36 Aligned_cols=59 Identities=10% Similarity=0.058 Sum_probs=27.4
Q ss_pred CCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCccc----CCCCC--CCeeEEEcCCCC-CCCCC
Q 044214 320 QKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSSSF----NGENK--CKISYLQDPGFA-GVKLN 380 (385)
Q Consensus 320 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~~l----p~~i~--~~LryL~l~~~~-~~~lP 380 (385)
.+++.+.+..+.. ....+..|.++++|++|+|+++.+ |..++ .+|++|++++|. ++.+|
T Consensus 88 ~~L~~L~l~~n~l--~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 88 SNLERLRIMGKDV--TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp TTCCEEEEECTTC--BGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred CCCCEEEeECCcc--CcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH
Confidence 4455555544432 111233445555555555555522 33333 555555555554 55444
No 481
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=93.63 E-value=0.091 Score=49.76 Aligned_cols=61 Identities=10% Similarity=0.029 Sum_probs=43.0
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---c-cCCCCC--CCeeEEEcCCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---S-FNGENK--CKISYLQDPGFAGVKLNN 381 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~-lp~~i~--~~LryL~l~~~~~~~lP~ 381 (385)
..+++.+.+..... ..+.+..|.++++|++|+|+++ . .|..++ .+|++|++++|.++.+|.
T Consensus 322 l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 322 LTHLLKLNLSQNFL--GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp CTTCCEEECCSSCC--CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccCCEEECCCCcc--CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCH
Confidence 34566666655432 3456677888888888888887 2 356666 788888888888888773
No 482
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.61 E-value=0.052 Score=44.55 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
...-|+|+|.+|+|||||...+..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhc
Confidence 345788999999999999999986
No 483
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=93.61 E-value=0.066 Score=51.82 Aligned_cols=60 Identities=23% Similarity=0.171 Sum_probs=36.1
Q ss_pred CCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---cc-CCCCC--CCeeEEEcCCCCCCCCCC
Q 044214 320 QKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SF-NGENK--CKISYLQDPGFAGVKLNN 381 (385)
Q Consensus 320 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~l-p~~i~--~~LryL~l~~~~~~~lP~ 381 (385)
..++.+.+..+.. ..+.+..|.++++|++|+|+++ .+ |..++ .+|++|++++|.++.+|.
T Consensus 21 ~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 86 (520)
T 2z7x_B 21 QKTTILNISQNYI--SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC 86 (520)
T ss_dssp TTCSEEECCSSCC--CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC
T ss_pred ccccEEECCCCcc--cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc
Confidence 3455555555432 2344456677777777777766 22 45555 677777777777766663
No 484
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.59 E-value=0.049 Score=48.69 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=31.3
Q ss_pred hHHHHHHhhcCCCCCeEEEEEEc---CCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 37 TVEEIESLLGVESKGVYALGIWG---IGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 37 ~l~~l~~~L~~~~~~~~vv~I~G---~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
.+.++.+.+.. +.++|+|++ -||+||||+|..++..+...-..+.-+.
T Consensus 22 ~~~~~~r~~~~---~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD 72 (298)
T 2oze_A 22 ILEELRRILSN---KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMID 72 (298)
T ss_dssp HHHHHHHHHHH---HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHhcC---CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEe
Confidence 44555555542 234666765 8999999999999987654433444444
No 485
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=93.57 E-value=0.092 Score=48.75 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=39.8
Q ss_pred cCCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---cc-CCCCC--CCeeEEEcCCCCCCCCC
Q 044214 319 GQKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SF-NGENK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 319 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~l-p~~i~--~~LryL~l~~~~~~~lP 380 (385)
..+++.+.+..... ..++...|.++++|++|+|+++ .+ |..+. .+|++|+++++.++.+|
T Consensus 116 l~~L~~L~L~~n~l--~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 181 (390)
T 3o6n_A 116 VPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181 (390)
T ss_dssp CTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC
T ss_pred CCCCCEEECCCCcc--CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc
Confidence 45566776666543 2456666777888888888876 33 33455 77888888887776654
No 486
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.57 E-value=0.13 Score=48.52 Aligned_cols=87 Identities=13% Similarity=0.089 Sum_probs=48.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEeeccccccCCCChHHHHHHHHHHHhCCCCCCchHHHHHHHhCCc
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLENVREESQIPGGLSCLRQKLLSNLLKDKNVMPYIDLNFRRLGHM 130 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~l~~~l~~k 130 (385)
.-.+++|+|+.|+||||+.+.+...+... .+.+++..-.-.... ..... . .+. ..........++..++..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~-~g~I~~~ed~ie~~~-~~~~q--~----~v~-~~~g~~f~~~lr~~Lrq~ 236 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSS-ERNILTVEDPIEFDI-DGIGQ--T----QVN-PRVDMTFARGLRAILRQD 236 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCEEEEESSCCSCC-SSSEE--E----ECB-GGGTBCHHHHHHHHGGGC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEEecccchhcc-CCcce--E----EEc-cccCcCHHHHHHHHhccC
Confidence 34589999999999999999999877544 344444311100000 00000 0 000 000114455667777777
Q ss_pred eEEEEEeCCCChhhhh
Q 044214 131 KVLIVFDDVTCFSQLE 146 (385)
Q Consensus 131 ~~LlVlDdv~~~~~~~ 146 (385)
+-++++.++.+.....
T Consensus 237 pd~i~vgEiRd~et~~ 252 (418)
T 1p9r_A 237 PDVVMVGEIRDLETAQ 252 (418)
T ss_dssp CSEEEESCCCSHHHHH
T ss_pred CCeEEEcCcCCHHHHH
Confidence 7788888887655433
No 487
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.56 E-value=0.04 Score=46.90 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 044214 54 ALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 54 vv~I~G~gGiGKTtLA~~~~~ 74 (385)
-|+|+|.+|||||+|...+.+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 477999999999999999875
No 488
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.55 E-value=0.041 Score=44.52 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
-.|+|+|.+|+|||||...+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4588999999999999999885
No 489
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.54 E-value=0.12 Score=56.70 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=29.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhCCCCceEEEe
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKISGDFDGSCFLE 87 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~w~~ 87 (385)
-+++.|+|.+|+||||||.+++......-..++|++
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis 418 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 458999999999999999999987655555677876
No 490
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.53 E-value=0.042 Score=44.72 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=19.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
--|+|+|.+|+|||||...+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999998875
No 491
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.53 E-value=0.065 Score=44.87 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFDKI 76 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 76 (385)
....+|+|+|++|+||+|+|..+.+.+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHc
Confidence 345799999999999999999887755
No 492
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.52 E-value=0.041 Score=45.64 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
..-|+|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998863
No 493
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.52 E-value=0.031 Score=50.30 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=20.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 044214 53 YALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 53 ~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
.+++|+|..|+|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 5899999999999999998875
No 494
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.52 E-value=0.042 Score=44.83 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
..-|+|+|.+|+|||||...+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhh
Confidence 45688999999999999999886
No 495
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.51 E-value=0.07 Score=43.77 Aligned_cols=24 Identities=29% Similarity=0.184 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 044214 51 GVYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 51 ~~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
+...|+|+|.+|+|||||...+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445788999999999999999885
No 496
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.51 E-value=0.046 Score=50.56 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDKIS 77 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 77 (385)
...++|+|..|+|||||++.++..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988653
No 497
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=93.50 E-value=0.091 Score=49.95 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=47.6
Q ss_pred CCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---cc-CCCCC--CCeeEEEcCCCCCCCCC
Q 044214 320 QKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SF-NGENK--CKISYLQDPGFAGVKLN 380 (385)
Q Consensus 320 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~l-p~~i~--~~LryL~l~~~~~~~lP 380 (385)
..++.+.+..... ..+.+..|.++++|++|+|+++ .+ |..+. .+|++|+|++|.++.+|
T Consensus 75 ~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 139 (452)
T 3zyi_A 75 SNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139 (452)
T ss_dssp TTCSEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred CCccEEECcCCcC--ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC
Confidence 4677777766643 4567788999999999999998 33 35666 89999999999999988
No 498
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.50 E-value=0.049 Score=45.09 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHH
Q 044214 50 KGVYALGIWGIGGIGKTTIARAIFD 74 (385)
Q Consensus 50 ~~~~vv~I~G~gGiGKTtLA~~~~~ 74 (385)
.....|+|+|.+|+|||||...+..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4467899999999999999999875
No 499
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.50 E-value=0.045 Score=45.20 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 044214 52 VYALGIWGIGGIGKTTIARAIFDK 75 (385)
Q Consensus 52 ~~vv~I~G~gGiGKTtLA~~~~~~ 75 (385)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 346889999999999999999874
No 500
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=93.48 E-value=0.054 Score=48.29 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=31.8
Q ss_pred CCeeEEEeecCCceeeeeCccccCCCCCCcEEEecCc---ccCCCCC--CCeeEEEcCCCCCCCCCCC
Q 044214 320 QKIEDICLDMSKVIEICLNTSTFTKMPKLRFLKFYSS---SFNGENK--CKISYLQDPGFAGVKLNNF 382 (385)
Q Consensus 320 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~LrvL~l~~~---~lp~~i~--~~LryL~l~~~~~~~lP~~ 382 (385)
.+++.+.+..+..... ..|.++++|+.|+|+++ .+|. +. .+|++|++++|.++.+|.|
T Consensus 134 ~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~l 196 (291)
T 1h6t_A 134 PQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRAL 196 (291)
T ss_dssp TTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGG
T ss_pred CCCCEEEccCCcCCcc----hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChhh
Confidence 4455555554432221 34566666666666666 2322 33 6666666666666666543
Done!