BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044216
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures
Length = 135
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 86/134 (64%), Gaps = 7/134 (5%)
Query: 27 QDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL-------NLAGSSG 79
Q+ PQDY+ HN ARAQVGV P+ WD ++A+ A++YA+ + CNL NLA G
Sbjct: 1 QNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGAGENLAKGGG 60
Query: 80 NLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIG 139
+ +G V LWVSE+ Y+Y +N C GK C HYT VVWRNSVR+GC + RCN G I
Sbjct: 61 DFTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGWWFIS 120
Query: 140 CNYASPGNVVGVKP 153
CNY GN +G +P
Sbjct: 121 CNYDPVGNWIGQRP 134
>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride
pdb|3Q2U|A Chain A, Structure Of Human Glioma Pathogenesis-Related Protein 1
Reveals Unique Loops And Surface Motifs
Length = 205
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 64/152 (42%), Gaps = 33/152 (21%)
Query: 27 QDFPQDYVNAHNAARAQVGVNP-----VKWDESIAAFARSYASQQIASCNLNL------- 74
+DF +D V HN R++V + WD ++A A+++AS S N L
Sbjct: 16 EDFIKDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWASNCQFSHNTRLKPPHKLH 75
Query: 75 -----------AGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVR 123
GS S + + W E DYD+ + C KVCGHYT VVW +S +
Sbjct: 76 PNFTSLGENIWTGSVPIFSVSSAITNWYDEIQDYDFKTRICK--KVCGHYTQVVWADSYK 133
Query: 124 IGCAKFRCNY--------GGTSIGCNYASPGN 147
+GCA C G CNY GN
Sbjct: 134 VGCAVQFCPKVSGFDALSNGAHFICNYGPGGN 165
>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate
Length = 154
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 15/139 (10%)
Query: 24 SRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSY----ASQQI---------ASC 70
S ++ F + + AHN R + GV P+K +++ A+ Y AS +I C
Sbjct: 4 SASKQFHNEVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQC 63
Query: 71 NLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFR 130
NLA +S + +G +V W SE +Y++ +G GH+T +VW+N+ ++G K
Sbjct: 64 GENLAWASYDQTGKEVADRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKAS 121
Query: 131 CNYGGTSIGCNYASPGNVV 149
+ G + + Y GNVV
Sbjct: 122 ASDGSSFVVARYFPAGNVV 140
>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein
Length = 154
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 17/140 (12%)
Query: 24 SRAQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL----------- 72
S ++ F + + AHN R + GV P+K +++ A+ Y S+ +AS +
Sbjct: 4 SASKQFHNEVLKAHNEYRQKHGVPPLKLXKNLNREAQQY-SEALASTRILKHSPESSRGQ 62
Query: 73 ---NLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKF 129
NLA +S + +G +V W SE +Y++ +G GH+T +VW+N+ ++G K
Sbjct: 63 XGENLAWASYDQTGKEVADRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKA 120
Query: 130 RCNYGGTSIGCNYASPGNVV 149
+ G + + Y GNVV
Sbjct: 121 SASDGSSFVVARYFPAGNVV 140
>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|B Chain B, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|C Chain C, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|D Chain D, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
Length = 211
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 18/145 (12%)
Query: 24 SRAQDFPQDYVNAHNAARAQVGVN-----PVKWDESIAAFARSYASQQIAS--------- 69
S +++ ++ V+ HNA R V +KW+ A A+ +A++ +
Sbjct: 1 SNKKNYQKEIVDKHNALRRSVKPTARNMLQMKWNSRAAQNAKRWANRCTFAHSPPNKRTV 60
Query: 70 ----CNLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIG 125
C N+ SS + VV W E ++ Y + G V GHYT VVW S IG
Sbjct: 61 GKLRCGENIFMSSQPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSYLIG 120
Query: 126 CAKFRCNYGGTSIGCNYASPGNVVG 150
CA +C+ C Y GN+ G
Sbjct: 121 CASAKCSSSKYLYVCQYCPAGNIRG 145
>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|B Chain B, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|C Chain C, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|D Chain D, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|A Chain A, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|B Chain B, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|C Chain C, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|D Chain D, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
Length = 210
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 18/142 (12%)
Query: 27 QDFPQDYVNAHNAARAQVGVN-----PVKWDESIAAFARSYASQQIAS------------ 69
+++ ++ V+ HNA R V +KW+ A A+ +A + +
Sbjct: 3 KNYQKEIVDKHNALRRSVKPTARNMLQMKWNSHAAQNAKRWADRCTFAHSPPNTRTVGKL 62
Query: 70 -CNLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAK 128
C N+ SS + VV W E ++ Y + G V GHYT VVW S IGCA
Sbjct: 63 RCGENIFMSSQPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHLIGCAS 122
Query: 129 FRCNYGGTSIGCNYASPGNVVG 150
+C+ C Y GN+ G
Sbjct: 123 AKCSSSKYLYVCQYCPAGNIRG 144
>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family
From Trimeresurus Stejnegeri Refined At 1.6 Angstroms
Resolution: Structual Relationship Of The Two Domains
Length = 221
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 58/148 (39%), Gaps = 24/148 (16%)
Query: 25 RAQDFPQDYVNAHNAARAQVGVNP-------VKWDESIAAFARSYASQQIAS-------- 69
R + + V+ HN+ R VNP ++W A A +A + I S
Sbjct: 10 RKPEIQNEIVDLHNSLRR--SVNPTASNMLRMEWYPEAADNAERWAYRCIESHSSYESRV 67
Query: 70 -----CNLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRI 124
C N+ S + D++ W E D+ Y + V GHYT +VW S RI
Sbjct: 68 IEGIKCGENIYMSPYPMKWTDIIHAWHDEYKDFKYGVGADPPNAVTGHYTQIVWYKSYRI 127
Query: 125 GCAKFRCNYGGTS--IGCNYASPGNVVG 150
GCA C S C Y GN +G
Sbjct: 128 GCAAAYCPSSPYSYFFVCQYCPAGNFIG 155
>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker
Derived From Snake Venom
Length = 221
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 24/148 (16%)
Query: 25 RAQDFPQDYVNAHNAARAQVGVNP-------VKWDESIAAFARSYASQQIAS-------- 69
R + + ++ HN+ R VNP ++W AA A +A + I S
Sbjct: 10 RKPEIQNEIIDLHNSLRR--SVNPTASNMLKMEWYPEAAANAERWAYRCIESHSSRDSRV 67
Query: 70 -----CNLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRI 124
C N+ ++ D++ W E D+ Y + + V GHYT +VW S R
Sbjct: 68 IGGIKCGENIYMATYPAKWTDIIHAWHGEYKDFKYGVGAVPSDAVIGHYTQIVWYKSYRA 127
Query: 125 GCAKFRCNYGGTSIG--CNYASPGNVVG 150
GCA C S C Y GN++G
Sbjct: 128 GCAAAYCPSSKYSYFYVCQYCPAGNIIG 155
>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
pdb|2VZN|B Chain B, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
Length = 218
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 68/163 (41%), Gaps = 43/163 (26%)
Query: 34 VNAHNAARAQV----------GVNP-------VKWDESIAAFARSYASQ---QIASC--- 70
VN HN R +V G P + WD +A A+ +A+Q + +C
Sbjct: 47 VNKHNELRQRVASGKEMRGTNGPQPPAVKMPNLTWDPELATIAQRWANQCTFEHDACRNV 106
Query: 71 -------NLNLAGSSGNLSGA--DVVGLWVSEKADYD------YNSNSCNAGKVCGHYTH 115
N+ SSG +++ LW +E D+D + S+ KV GHYT
Sbjct: 107 ERFAVGQNIAATSSSGKNKSTPNEMILLWYNEVKDFDNRWISSFPSDDNILMKV-GHYTQ 165
Query: 116 VVWRNSVRIGCAKFRC----NYGGTSIGCNYASPGNVVGVKPY 154
+VW + +IGC + N+ + CNY GNV+G Y
Sbjct: 166 IVWAKTTKIGCGRIMFKEPDNWTKHYLVCNYGPAGNVLGAPIY 208
>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
pdb|1XTA|B Chain B, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
Length = 221
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 20/147 (13%)
Query: 24 SRAQDFPQDYVNAHNAARAQVGVN-----PVKWDESIAAFARSYASQ------------- 65
+R + ++ V+ HN+ R +V ++W A+ A +A+
Sbjct: 9 TRRKKKQKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWANTCSLNHSPDNLRVL 68
Query: 66 QIASCNLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIG 125
+ C ++ SS + +++ LW E ++ Y + G V GHYT +VW + R G
Sbjct: 69 EGIQCGESIYMSSNARTWTEIIHLWHDEYKNFVYGVGASPPGSVTGHYTQIVWYQTYRAG 128
Query: 126 CAKFRCNYGGTSIG--CNYASPGNVVG 150
CA C S C Y GN G
Sbjct: 129 CAVSYCPSSAWSYFYVCQYCPSGNFQG 155
>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|B Chain B, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|C Chain C, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|2GIZ|A Chain A, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|2GIZ|B Chain B, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|3MZ8|A Chain A, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
pdb|3MZ8|B Chain B, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
Length = 221
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 20/147 (13%)
Query: 24 SRAQDFPQDYVNAHNAARAQVGVN-----PVKWDESIAAFARSYASQ------------- 65
+R + ++ V+ HN+ R +V ++W A+ A +A+
Sbjct: 9 TRRKKKQKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWANTCSLNHSPDNLRVL 68
Query: 66 QIASCNLNLAGSSGNLSGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIG 125
+ C ++ SS + +++ LW E ++ Y + G V GHYT +VW + R G
Sbjct: 69 EGIQCGESIYMSSNARTWTEIIHLWHDEYKNFVYGVGANPPGSVTGHYTQIVWYQTYRAG 128
Query: 126 CAKFRCNYGGTSIG--CNYASPGNVVG 150
CA C S C Y GN G
Sbjct: 129 CAVSYCPSSAWSYFYVCQYCPSGNFQG 155
>pdb|1QNX|A Chain A, Ves V 5, An Allergen From Vespula Vulgaris Venom
Length = 209
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 38/161 (23%)
Query: 31 QDYVNAHNAARAQV----------GVNP-------VKWDESIAAFARSYASQ-------- 65
QD + HN R ++ G P + W++ +A A+ +A+Q
Sbjct: 47 QDILKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQVWANQCQYGHDTC 106
Query: 66 ------QIASCNLNLAGSSGNL--SGADVVGLWVSEKADYDYNSN-SCNAGKVCGHYTHV 116
Q+ N+ L GS+ +V +W E DY+ S N GHYT +
Sbjct: 107 RDVAKYQVGQ-NVALTGSTAAKYDDPVKLVKMWEDEVKDYNPKKKFSGNDFLKTGHYTQM 165
Query: 117 VWRNSVRIGCAKFRC---NYGGTSIGCNYASPGNVVGVKPY 154
VW N+ +GC + + + CNY GN + Y
Sbjct: 166 VWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNEELY 206
>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The
Nematode Parasite Necator Americanus And A Vaccine
Antigen For Human Hookworm Infection
Length = 196
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 111 GHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVGVKPY 154
GHYT +VW+ +V++GC C+ + C Y GN++G Y
Sbjct: 133 GHYTQMVWQETVKLGCYVEACS-NMCYVVCQYGPAGNMMGKDIY 175
>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1
pdb|3NT8|B Chain B, Crystal Structure Of Na-Asp-1
Length = 424
Score = 32.7 bits (73), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 111 GHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNVVG 150
GHYT + W + ++GCA CN + C Y GN +G
Sbjct: 357 GHYTQMAWDTTYKLGCAVVFCNDFTFGV-CQYGPGGNYMG 395
>pdb|2CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
Length = 437
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 87 VGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNS 121
VG VS++ DY N+ N+G+V Y H V R +
Sbjct: 292 VGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKT 326
>pdb|4CTS|A Chain A, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|4CTS|B Chain B, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|1CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
pdb|3ENJ|A Chain A, Structure Of Pig Heart Citrate Synthase At 1.78 A
Resolution
Length = 437
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 87 VGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNS 121
VG VS++ DY N+ N+G+V Y H V R +
Sbjct: 292 VGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKT 326
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,898,611
Number of Sequences: 62578
Number of extensions: 188272
Number of successful extensions: 458
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 21
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)