Query 044216
Match_columns 154
No_of_seqs 123 out of 1053
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 12:35:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044216.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044216hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05381 SCP_PR-1_like SCP_PR-1 100.0 4.6E-40 1E-44 228.0 14.6 124 31-154 2-136 (136)
2 cd05384 SCP_PRY1_like SCP_PRY1 100.0 2.6E-35 5.6E-40 202.4 13.3 119 28-150 1-129 (129)
3 cd05382 SCP_GAPR-1_like SCP_GA 100.0 4.6E-35 1E-39 201.6 10.8 119 28-148 1-132 (132)
4 cd05383 SCP_CRISP SCP_CRISP: S 100.0 1.8E-33 3.9E-38 195.5 12.9 117 29-145 2-138 (138)
5 smart00198 SCP SCP / Tpx-1 / A 100.0 3.3E-33 7.2E-38 195.0 12.2 117 29-145 2-144 (144)
6 cd05385 SCP_GLIPR-1_like SCP_G 100.0 1.5E-32 3.2E-37 192.2 12.9 116 28-145 1-144 (144)
7 cd05559 SCP_HrTT-1 SCP_HrTT-1: 100.0 7.2E-32 1.6E-36 187.0 11.8 114 30-143 1-136 (136)
8 cd00168 SCP SCP: SCP-like extr 100.0 8.4E-31 1.8E-35 178.2 11.9 111 31-143 2-122 (122)
9 KOG3017 Defense-related protei 100.0 1.1E-31 2.4E-36 200.2 7.1 127 28-154 40-198 (225)
10 cd05380 SCP_euk SCP_euk: SCP-l 100.0 9.2E-30 2E-34 177.0 10.4 114 30-143 1-144 (144)
11 PF00188 CAP: Cysteine-rich se 99.9 2.1E-21 4.6E-26 129.0 9.2 109 34-142 1-124 (124)
12 TIGR02909 spore_YkwD uncharact 99.6 3.2E-15 6.9E-20 102.4 11.3 97 28-142 3-125 (127)
13 cd05379 SCP_bacterial SCP_bact 99.5 9.5E-13 2.1E-17 88.5 10.3 94 31-142 2-121 (122)
14 COG2340 Uncharacterized protei 98.7 1.1E-07 2.5E-12 70.2 8.6 44 26-69 77-120 (207)
15 PF11054 Surface_antigen: Spor 90.8 2.2 4.8E-05 32.3 7.9 124 30-154 35-218 (254)
16 PF07172 GRP: Glycine rich pro 88.1 0.27 5.8E-06 31.9 1.2 23 1-24 1-23 (95)
17 PF06667 PspB: Phage shock pro 62.6 16 0.00035 22.6 3.6 17 23-39 34-50 (75)
18 PF15240 Pro-rich: Proline-ric 60.3 4.4 9.5E-05 29.3 0.9 18 7-24 2-19 (179)
19 KOG0286 G-protein beta subunit 57.8 5.5 0.00012 31.2 1.1 34 114-148 78-111 (343)
20 KOG3017 Defense-related protei 49.3 14 0.00031 27.1 2.2 25 21-45 22-46 (225)
21 TIGR03044 PS_II_psb27 photosys 44.0 74 0.0016 22.0 4.8 27 24-50 32-58 (135)
22 KOG4439 RNA polymerase II tran 39.6 31 0.00067 30.6 2.9 46 22-67 777-844 (901)
23 PF11336 DUF3138: Protein of u 38.4 61 0.0013 27.0 4.3 15 52-66 82-96 (514)
24 PF12273 RCR: Chitin synthesis 38.0 69 0.0015 21.6 4.0 18 34-51 19-36 (130)
25 PRK09458 pspB phage shock prot 36.9 90 0.0019 19.3 3.9 19 23-41 34-52 (75)
26 TIGR02976 phageshock_pspB phag 36.5 57 0.0012 20.1 3.1 6 6-11 7-12 (75)
27 PRK14861 tatA twin arginine tr 32.7 1.1E+02 0.0024 18.0 4.0 43 1-43 1-43 (61)
28 COG1318 Predicted transcriptio 30.5 44 0.00095 24.2 2.1 19 46-64 39-57 (182)
29 TIGR02743 TraW type-F conjugat 29.9 1.3E+02 0.0028 22.2 4.6 32 28-65 32-63 (202)
30 PRK14857 tatA twin arginine tr 29.3 1.2E+02 0.0026 19.4 3.7 43 1-43 1-44 (90)
31 PF10731 Anophelin: Thrombin i 28.0 73 0.0016 18.8 2.4 16 5-20 3-18 (65)
32 PRK14858 tatA twin arginine tr 27.9 1.1E+02 0.0024 20.3 3.5 40 5-44 4-43 (108)
33 PF13677 MotB_plug: Membrane M 25.1 1.2E+02 0.0027 17.4 3.1 29 6-35 23-51 (58)
34 COG3088 CcmH Uncharacterized p 25.1 2.5E+02 0.0055 19.8 5.3 21 52-72 31-52 (153)
35 PF04863 EGF_alliinase: Alliin 23.9 87 0.0019 18.1 2.1 20 49-71 1-20 (56)
36 PF03295 Pox_TAA1: Poxvirus tr 23.7 86 0.0019 18.5 2.1 18 28-45 24-41 (63)
37 PF03032 Brevenin: Brevenin/es 22.6 42 0.0009 18.6 0.7 8 10-17 7-14 (46)
38 PLN00064 photosystem II protei 21.5 1.3E+02 0.0029 21.4 3.1 29 22-50 59-87 (166)
39 PF14208 DUF4320: Domain of un 21.4 1.6E+02 0.0035 19.6 3.5 22 33-54 46-68 (116)
40 KOG1673 Ras GTPases [General f 20.9 57 0.0012 23.5 1.2 33 82-114 106-138 (205)
41 PRK14859 tatA twin arginine tr 20.3 2E+02 0.0044 17.0 3.7 41 5-45 4-44 (63)
No 1
>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=4.6e-40 Score=228.00 Aligned_cols=124 Identities=60% Similarity=1.139 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhhhcCCC---------ceeeccC-CCChHHHHHHHHhhhccCCCC
Q 044216 31 QDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL---------NLAGSSG-NLSGADVVGLWVSEKADYDYN 100 (154)
Q Consensus 31 ~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~c~~---------ni~~~~~-~~~~~~~v~~W~~e~~~y~~~ 100 (154)
+.||+.||++|+.++|++|+||++||..||.||++|+++|.. |+....+ ...+.++|+.|++|...|++.
T Consensus 2 ~~il~~hN~~R~~~~~~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~~~GeNi~~~~~~~~~~~~~v~~W~~e~~~y~~~ 81 (136)
T cd05381 2 QDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRRGDCALVHSNGPYGENLFWGSGGNWSAADAVASWVSEKKYYDYD 81 (136)
T ss_pred hHHHHHHHHHHHhcCCCcceECHHHHHHHHHHHHHhcCCCCcccCCCCCCceEEEecCCCCCHHHHHHHHHhccccCCCC
Confidence 689999999999999999999999999999999998877764 6765543 357889999999999999998
Q ss_pred CCCCCCCccchhHHHHHHHhCCeeeEEEEEeCC-CCEEEEEEcCCCCccCCCCCC
Q 044216 101 SNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNY-GGTSIGCNYASPGNVVGVKPY 154 (154)
Q Consensus 101 ~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~-~~~~~vC~Y~p~gn~~g~~~Y 154 (154)
.+.+..+..++||+||||+++++||||++.|.+ +..++||+|+|+||+.|++||
T Consensus 82 ~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~vvC~Y~p~gn~~g~~~Y 136 (136)
T cd05381 82 SNTCAAGKMCGHYTQVVWRNTTRVGCARVTCDNGGGVFIICNYDPPGNYIGQRPY 136 (136)
T ss_pred CCCcCCCccchHHHHHHHHhcCEeceEEEEeCCCCcEEEEEEeeCCCCCCCCCCC
Confidence 888777778999999999999999999999987 468999999999999999998
No 2
>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.
Probab=100.00 E-value=2.6e-35 Score=202.45 Aligned_cols=119 Identities=39% Similarity=0.778 Sum_probs=103.2
Q ss_pred chHHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhhhcCCC---------ceeeccCCCChHHHHHHHHhhhccCC
Q 044216 28 DFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL---------NLAGSSGNLSGADVVGLWVSEKADYD 98 (154)
Q Consensus 28 ~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~c~~---------ni~~~~~~~~~~~~v~~W~~e~~~y~ 98 (154)
++++.||+.||.+|+.+++++|+||.+|+..||.||++|...|.. |+..+.. .+.++++.|++|...|+
T Consensus 1 ~~~~~iL~~hN~~R~~~g~~~L~w~~~La~~A~~~a~~c~~~~~~~~~~~~~geNi~~~~~--~~~~~v~~W~~e~~~y~ 78 (129)
T cd05384 1 SFASSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANSYDCSGNLAHSGGPYGENLAAGYP--SGTSAVDAWYDEIEDYD 78 (129)
T ss_pred CHHHHHHHHHHHHHHHcCCCcCccCHHHHHHHHHHHHHhccCCceecCCCCCCcEEEEecC--CHHHHHHHHHhhhhhCC
Confidence 468999999999999999999999999999999999988744432 6665432 68899999999999999
Q ss_pred CCCCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCC-CEEEEEEcCCCCccCC
Q 044216 99 YNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYG-GTSIGCNYASPGNVVG 150 (154)
Q Consensus 99 ~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~-~~~~vC~Y~p~gn~~g 150 (154)
+..+.+ +..++||+||||+++++||||++.|.+. ..++||+|+|+||+.|
T Consensus 79 ~~~~~~--~~~~~h~tqmvw~~t~~vGCa~~~c~~~~~~~~vC~Y~p~Gn~~g 129 (129)
T cd05384 79 YSNPGF--SEATGHFTQLVWKSTTQVGCAYKDCGGAWGWYIVCEYDPAGNVIG 129 (129)
T ss_pred CCCCCC--CCcccchhhhhhhccceeeeEEEEeCCCCeEEEEEEEECCCCCCc
Confidence 977543 3568999999999999999999999873 5889999999999875
No 3
>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.
Probab=100.00 E-value=4.6e-35 Score=201.64 Aligned_cols=119 Identities=35% Similarity=0.625 Sum_probs=104.0
Q ss_pred chHHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhhhcCCC----------ceeeccC---CCChHHHHHHHHhhh
Q 044216 28 DFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL----------NLAGSSG---NLSGADVVGLWVSEK 94 (154)
Q Consensus 28 ~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~c~~----------ni~~~~~---~~~~~~~v~~W~~e~ 94 (154)
++++.||+.||.+|+.++|++|+||++|+..||.||++|+..+.. |+++..+ ...+.++|+.|++|.
T Consensus 1 ~~~~~iL~~hN~~R~~~g~~~L~wd~~La~~A~~~a~~c~~~~~~~h~~~~~~GeN~~~~~~~~~~~~~~~~v~~W~~e~ 80 (132)
T cd05382 1 DFQKECLDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLASSGKLQHSSPSGYGENLAYASGSGPDLTGEEAVDSWYNEI 80 (132)
T ss_pred CHHHHHHHHHHHHHHHcCCCcCeeCHHHHHHHHHHHHHhhhcCceeCCCCCCCCceeEEecCCCCCCCHHHHHHHHHhcc
Confidence 478999999999999999999999999999999999999854321 7776653 457899999999999
Q ss_pred ccCCCCCCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCCCEEEEEEcCCCCcc
Q 044216 95 ADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNV 148 (154)
Q Consensus 95 ~~y~~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~gn~ 148 (154)
..|++..+.. +..++||+||||+++++||||++.|.++..++||+|+|+||+
T Consensus 81 ~~y~~~~~~~--~~~~gh~tqmvw~~t~~vGCa~~~~~~~~~~~vC~Y~p~Gn~ 132 (132)
T cd05382 81 KKYDFNKPGF--SSKTGHFTQVVWKSSTELGVGVAKSKKGCVYVVARYRPAGNV 132 (132)
T ss_pred ccCCCCCCCC--CCCCCCeEEeEecCCCceeeEEEEcCCCCEEEEEEEeCCCCC
Confidence 9999875443 356999999999999999999999987778999999999985
No 4
>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t
Probab=100.00 E-value=1.8e-33 Score=195.49 Aligned_cols=117 Identities=31% Similarity=0.510 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhhh---cCC----------CceeeccCCCChHHHHHHH
Q 044216 29 FPQDYVNAHNAARAQVG-----VNPVKWDESIAAFARSYASQQIA---SCN----------LNLAGSSGNLSGADVVGLW 90 (154)
Q Consensus 29 ~~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~---~c~----------~ni~~~~~~~~~~~~v~~W 90 (154)
.++.||+.||.+|+.+. |.+|+||++||..||.||++|.. .|. .|++.......+.++|+.|
T Consensus 2 ~~~~il~~HN~~R~~~~p~a~~M~~l~Wd~~La~~A~~~a~~C~~~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~av~~W 81 (138)
T cd05383 2 VQKEIVDLHNELRRSVNPTASNMLKMEWNEEAAQNAKKWANTCNLTHSPPNGRTIGGITCGENIFMSSYPRSWSDVIQAW 81 (138)
T ss_pred HHHHHHHHHHHHhccCCCCcccCcccEeCHHHHHHHHHHHhcCCCcCCchhhcccCCCCcceeeeccCCCCCHHHHHHHH
Confidence 47899999999999985 77899999999999999998872 221 1565554445788999999
Q ss_pred HhhhccCCCCCCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCC--CEEEEEEcCCC
Q 044216 91 VSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYG--GTSIGCNYASP 145 (154)
Q Consensus 91 ~~e~~~y~~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~--~~~~vC~Y~p~ 145 (154)
|+|...|+|+.+.+..+..++|||||||++|++||||++.|.++ +.++||+|+|+
T Consensus 82 ~~e~~~y~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~vC~Y~P~ 138 (138)
T cd05383 82 YDEYKDFKYGVGATPPGAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCPA 138 (138)
T ss_pred HHHHHhCCCCCCCCCCCCchhhHHHHHHHhccccceEEEECCCCCcCEEEEEecCCC
Confidence 99999999998777677889999999999999999999999875 68999999995
No 5
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.
Probab=100.00 E-value=3.3e-33 Score=194.98 Aligned_cols=117 Identities=37% Similarity=0.637 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHHhhCC-----------CCCcccCHHHHHHHHHHHHhhh---hcCCC---ceeeccC-----CCChHHH
Q 044216 29 FPQDYVNAHNAARAQVG-----------VNPVKWDESIAAFARSYASQQI---ASCNL---NLAGSSG-----NLSGADV 86 (154)
Q Consensus 29 ~~~~il~~hN~~R~~~~-----------m~~L~Wd~~La~~Aq~~a~~~~---~~c~~---ni~~~~~-----~~~~~~~ 86 (154)
.++.||+.||.+|+.++ |++|+||.+||..||.||++|. +.|.. |++...+ ...+.++
T Consensus 2 ~~~~iL~~HN~~R~~~a~G~~~~p~a~~m~~l~Wd~~La~~A~~~a~~C~~~~~~~~~~GeNi~~~~~~~~~~~~~~~~a 81 (144)
T smart00198 2 QQQEILDAHNKLRSQVAKGLLANPAASNMLKLTWDCELASSAQNWANQCPFGHSTPRGYGENLAWWSSSTDLPITYASAA 81 (144)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHHHHhCCCcCCCcCCcCcceEEecccCcccchhHHHH
Confidence 58899999999999999 9999999999999999999887 23322 7766542 3478889
Q ss_pred HHHHHhhhccCCCCCCCCCC-CccchhHHHHHHHhCCeeeEEEEEeCCCC---EEEEEEcCCC
Q 044216 87 VGLWVSEKADYDYNSNSCNA-GKVCGHYTHVVWRNSVRIGCAKFRCNYGG---TSIGCNYASP 145 (154)
Q Consensus 87 v~~W~~e~~~y~~~~~~~~~-~~~~~~f~q~vw~~t~~vGCa~~~c~~~~---~~~vC~Y~p~ 145 (154)
|+.|++|...|++..+.+.. +..++||+||||+++++||||++.|.++. .++||+|+|+
T Consensus 82 v~~W~~e~~~y~~~~~~~~~~~~~~~hftqmvw~~s~~vGCa~~~c~~~~~~~~~~vC~Y~P~ 144 (144)
T smart00198 82 VQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWAKTYKVGCGVSNCPDGTKKKTVVVCNYDPP 144 (144)
T ss_pred HHHHHHHHHHcCCCCCccccCccchhHHHHHHHHhcCCcceEEEECCCCCcceEEEEEecCCC
Confidence 99999999999998877665 57799999999999999999999998874 6999999995
No 6
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=1.5e-32 Score=192.19 Aligned_cols=116 Identities=35% Similarity=0.628 Sum_probs=97.9
Q ss_pred chHHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhhh---cCC--------------Cceeecc-CCCChH
Q 044216 28 DFPQDYVNAHNAARAQVG-----VNPVKWDESIAAFARSYASQQIA---SCN--------------LNLAGSS-GNLSGA 84 (154)
Q Consensus 28 ~~~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~---~c~--------------~ni~~~~-~~~~~~ 84 (154)
+++++||+.||.+|+.+. |.+|+||++||..||.||++|.. .|. .||+... +...+.
T Consensus 1 ~f~~~~L~~HN~~R~~~~p~a~~m~~l~Wd~~La~~Aq~~a~~C~~~~~~~~~~~~~~~~~~~~~GeNi~~~~~~~~~~~ 80 (144)
T cd05385 1 EFIDECVRIHNELRSKVSPPAANMRYMTWDAALAKTARAWAKKCKFKHNIYLGKRYKCHPKFTSVGENIWLGSIYIFSPK 80 (144)
T ss_pred CHHHHHHHHHHHHHhhCCCCcccCcccccCHHHHHHHHHHHhcCCCCCCchhhcccccccccCcccceeeecccCCCCHH
Confidence 578999999999999994 89999999999999999998862 221 1665544 234788
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCC-----CEEEEEEcCCC
Q 044216 85 DVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYG-----GTSIGCNYASP 145 (154)
Q Consensus 85 ~~v~~W~~e~~~y~~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~-----~~~~vC~Y~p~ 145 (154)
++++.||+|...|+|..+.+. ..++|||||||++|++||||++.|..+ ..++||+|+|+
T Consensus 81 ~av~~W~~e~~~y~~~~~~~~--~~~ghftqmvw~~t~~vGCa~~~c~~~~~~~~~~~vVC~Y~p~ 144 (144)
T cd05385 81 NAVTSWYNEGKFYDFDTNSCS--RVCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA 144 (144)
T ss_pred HHHHHHHHHHHhCCCCCCCCC--CcccCHHHHHHhhccccceEEEECCCCCCccccEEEEEeCCCC
Confidence 999999999999999876654 469999999999999999999999774 26899999994
No 7
>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.98 E-value=7.2e-32 Score=187.05 Aligned_cols=114 Identities=41% Similarity=0.786 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhhh---cCC----C--ceeeccC-CCChHHHHHHHHhhh
Q 044216 30 PQDYVNAHNAARAQVG-----VNPVKWDESIAAFARSYASQQIA---SCN----L--NLAGSSG-NLSGADVVGLWVSEK 94 (154)
Q Consensus 30 ~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~---~c~----~--ni~~~~~-~~~~~~~v~~W~~e~ 94 (154)
|+.||+.||++|+.++ |.+|+||++||..||.||++|.. .|. . |++...+ ...+.++++.|++|.
T Consensus 1 r~~il~~HN~~R~~~~p~a~~m~~L~Wd~~La~~A~~~a~~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~v~~W~~e~ 80 (136)
T cd05559 1 RLNLVDLHNQYRSQVSPPAANMLKMTWDEELAALAEAYARKCIWDHNPDRGHLRVGENLFISTGPPFDATKAVEDWNNEK 80 (136)
T ss_pred CcHHHHHHHHHHhhCCCccccCcccccCHHHHHHHHHHHHhccccCCCcccCCCceeeeeecCCCCCCHHHHHHHHHHHH
Confidence 4789999999999996 77999999999999999998873 222 1 6766553 357899999999999
Q ss_pred ccCCCCCCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCC-------CEEEEEEcC
Q 044216 95 ADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYG-------GTSIGCNYA 143 (154)
Q Consensus 95 ~~y~~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~-------~~~~vC~Y~ 143 (154)
..|+++.+.+..+..++||+||||+++++||||++.|.++ ..++||+|+
T Consensus 81 ~~y~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~~~~~vC~Y~ 136 (136)
T cd05559 81 LDYNYNTNTCAPNKMCGHYTQVVWANTFKIGCGSYFCETLEVLRWENATLLVCNYG 136 (136)
T ss_pred HhcCCCCCCCCCCCcccchHHHHHhccCccceEEEECCCCCCCCcccCEEEEecCC
Confidence 9999998888777889999999999999999999999652 478999995
No 8
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as
Probab=99.97 E-value=8.4e-31 Score=178.25 Aligned_cols=111 Identities=36% Similarity=0.689 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhhC-CCCCcccCHHHHHHHHHHHHhhhh---cCC------CceeeccCCCChHHHHHHHHhhhccCCCC
Q 044216 31 QDYVNAHNAARAQV-GVNPVKWDESIAAFARSYASQQIA---SCN------LNLAGSSGNLSGADVVGLWVSEKADYDYN 100 (154)
Q Consensus 31 ~~il~~hN~~R~~~-~m~~L~Wd~~La~~Aq~~a~~~~~---~c~------~ni~~~~~~~~~~~~v~~W~~e~~~y~~~ 100 (154)
++||+.||.+|+.+ .|++|+||++|+..||.+|++|.. .+. .|++.+.+...+.++++.|++|...|+|.
T Consensus 2 ~~il~~hN~~R~~~a~~~~L~wd~~La~~A~~~a~~c~~~h~~~~~~~~~geNi~~~~~~~~~~~~v~~W~~e~~~y~~~ 81 (122)
T cd00168 2 QEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYANRCIFKHSGEDGRGFVGENLAAGSYDMTGPAAVQAWYNEIKNYNFG 81 (122)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHHhhccccCCCcccCCCCCceeEEecCCCCHHHHHHHHHHHHHhCCCC
Confidence 57999999999999 999999999999999999998862 222 17777665568999999999999999998
Q ss_pred CCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCCCEEEEEEcC
Q 044216 101 SNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNYA 143 (154)
Q Consensus 101 ~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~~~~~vC~Y~ 143 (154)
.+. .+..++||+||||+++++||||++.|.+++.++||+|+
T Consensus 82 ~~~--~~~~~~h~~qmvw~~s~~vGca~~~~~~~~~~~vC~Y~ 122 (122)
T cd00168 82 QPG--FSSGTGHYTQVVWKNTTKIGCGVAFCGSNSYYVVCNYG 122 (122)
T ss_pred CCC--CCCCccchhhhhcccCCeeeeEEEEcCCCCEEEEEeCc
Confidence 543 34568999999999999999999999877799999995
No 9
>KOG3017 consensus Defense-related protein containing SCP domain [Function unknown]
Probab=99.97 E-value=1.1e-31 Score=200.15 Aligned_cols=127 Identities=40% Similarity=0.779 Sum_probs=110.0
Q ss_pred chHHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhhh-cC--C---C-----ceeeccCC-------CChH
Q 044216 28 DFPQDYVNAHNAARAQVG-----VNPVKWDESIAAFARSYASQQIA-SC--N---L-----NLAGSSGN-------LSGA 84 (154)
Q Consensus 28 ~~~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~Aq~~a~~~~~-~c--~---~-----ni~~~~~~-------~~~~ 84 (154)
+++++|++.||.+|..+. |.+|+||++||..||.||++|.. .+ . . |+++..+. ..+.
T Consensus 40 ~~~~~~~~~hn~~r~~~~~~as~m~~m~Wd~~La~~Aq~~a~~c~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~~~~~ 119 (225)
T KOG3017|consen 40 NLRSEILNGHNVARGAVGPPASNMMKLKWDDELAALAQNWANTCPFGHDKCVHTSFGPYGENLAWGWSSNPPLSLDTSGA 119 (225)
T ss_pred HHHHHHHhhhHHhcCccCCchHhCccccCCHHHHHHHHHHHhhCCcccCccccccCCCCcccceeeccCCCCccccccHH
Confidence 678899999999999999 99999999999999999999984 23 2 1 77766543 4677
Q ss_pred HHHHHHHhhhccCCCCCCCCCC---CccchhHHHHHHHhCCeeeEEEEEeCCC-----CEEEEEEcCCCCc-cCCCCCC
Q 044216 85 DVVGLWVSEKADYDYNSNSCNA---GKVCGHYTHVVWRNSVRIGCAKFRCNYG-----GTSIGCNYASPGN-VVGVKPY 154 (154)
Q Consensus 85 ~~v~~W~~e~~~y~~~~~~~~~---~~~~~~f~q~vw~~t~~vGCa~~~c~~~-----~~~~vC~Y~p~gn-~~g~~~Y 154 (154)
.+++.|+.|...|++..+.+.. ++.++|||||||+++++||||++.|.++ ..++||+|+|+|| +.++.||
T Consensus 120 ~a~~~w~~e~~~~~~~~~~~~~~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~~~~~~~~~~~vC~Y~p~g~~~~~~~~y 198 (225)
T KOG3017|consen 120 LAVEAWESEFQEYDWSSNTCSSADFGEGIGHYTQMVWAKSTKVGCGVVRCGNGSNGYNTVAVVCNYDPPGNNINGEIPY 198 (225)
T ss_pred HHHHHHHHHHHHccCcccccCcccCCCcceEEEEEEEeCCceeceeeccCCCCCCCcceEEEEEEeecCCCCcCCCCcC
Confidence 8999999999999999998875 7889999999999999999999999887 5799999999955 4446776
No 10
>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.96 E-value=9.2e-30 Score=176.95 Aligned_cols=114 Identities=36% Similarity=0.726 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHhhC------------CCCCcccCHHHHHHHHHHHHhhh---hcCC----C--ceeeccCC-----CCh
Q 044216 30 PQDYVNAHNAARAQV------------GVNPVKWDESIAAFARSYASQQI---ASCN----L--NLAGSSGN-----LSG 83 (154)
Q Consensus 30 ~~~il~~hN~~R~~~------------~m~~L~Wd~~La~~Aq~~a~~~~---~~c~----~--ni~~~~~~-----~~~ 83 (154)
++.||+.||.+|+.+ .|.+|+||.+||..||.||++|. +.|. . |++..... ..+
T Consensus 1 ~~~il~~HN~~R~~~a~g~~~~~p~a~~m~~l~Wd~~La~~A~~~a~~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~~ 80 (144)
T cd05380 1 RQAILDAHNELRSKVAKGTYSLLPPASNMPKLKWDDELAALAQNWAKTCVFEHSPCRNTGGVGQNLAAGSSTGSTVEELA 80 (144)
T ss_pred CcHHHHHHHHHHHHhhcCCCCCCCchhcCCcceeCHHHHHHHHHHHhcCCCcCCcccCCCCCCcEEEEeccCCCCHHHHH
Confidence 468999999999999 69999999999999999999885 3342 1 77665532 268
Q ss_pred HHHHHHHHhhhccCCCCCC-CCCCCccchhHHHHHHHhCCeeeEEEEEeCC---CCEEEEEEcC
Q 044216 84 ADVVGLWVSEKADYDYNSN-SCNAGKVCGHYTHVVWRNSVRIGCAKFRCNY---GGTSIGCNYA 143 (154)
Q Consensus 84 ~~~v~~W~~e~~~y~~~~~-~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~---~~~~~vC~Y~ 143 (154)
.++|+.|++|...|++... .+..+..++||+||||+++++||||++.|.. ...++||+|+
T Consensus 81 ~~~v~~W~~e~~~~~~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~~~~~~~~~~~~vC~Y~ 144 (144)
T cd05380 81 EDAVNAWYNELKDYGFGSNPTNNFNSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS 144 (144)
T ss_pred HHHHHHHHHHHHHcCCCcCcccccccchhHHHHHHHHhcCccceEEEEeecCCceEEEEEecCC
Confidence 8999999999999999875 4455678999999999999999999999975 3699999995
No 11
>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....
Probab=99.86 E-value=2.1e-21 Score=128.97 Aligned_cols=109 Identities=36% Similarity=0.549 Sum_probs=77.6
Q ss_pred HHHHHHHH-hhCCCCCcccCHHHHHHHHHHHHhhhhcCCC------ceeeccCCCChHH----HHHHHHhhhccCCCCC-
Q 044216 34 VNAHNAAR-AQVGVNPVKWDESIAAFARSYASQQIASCNL------NLAGSSGNLSGAD----VVGLWVSEKADYDYNS- 101 (154)
Q Consensus 34 l~~hN~~R-~~~~m~~L~Wd~~La~~Aq~~a~~~~~~c~~------ni~~~~~~~~~~~----~v~~W~~e~~~y~~~~- 101 (154)
|+.||++| ....+++|+||++|+..|+.+|+.|...... +............ .++.|+.+...+++..
T Consensus 1 L~~~N~~R~~~~~~~~L~~d~~L~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (124)
T PF00188_consen 1 LDLHNEYRSAANGLPPLKWDPELAKAAQAHAKYCANSNSLSHDSGENGSQSSRFGSYSDAQVTAVENWYSESKNYNFQNQ 80 (124)
T ss_dssp HHHHHHHHHBSSTBB--EE-HHHHHHHHHHHTTTCSSEETTEESEEEEEEESSTTSHHHHHHHHHHHHHGGGGGEETTCS
T ss_pred CHHHHHHHHHhCCCCCCeeCHHHHHHHHHhhHHhhhhcccccccCCCCccccccccccchhhHHHHHHHhcccccccccc
Confidence 78999999 7778888999999999999999976652221 3322221112222 2899999999988772
Q ss_pred -CCCCCCccchhHHHHHHHhCCeeeEEEEEeCCCC--EEEEEEc
Q 044216 102 -NSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGG--TSIGCNY 142 (154)
Q Consensus 102 -~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~~--~~~vC~Y 142 (154)
........++||++|+|.++++||||++.|.++. .++||+|
T Consensus 81 ~~~~~~~~~~~h~~~ll~~~~~~iGca~~~~~~~~~~~~~vc~y 124 (124)
T PF00188_consen 81 SIFNSWMNSPGHFTNLLWPNTTRIGCAVANCPNGKNNYYWVCNY 124 (124)
T ss_dssp TEESSTTSTCHHHHHHT-TT--EEEEEEEEETTSSSEEEEEEEE
T ss_pred hhhhccCCchhhhhhhhcCCCCEEEEEEEEeCCCCeeEEEEEEC
Confidence 2222345689999999999999999999998875 9999998
No 12
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=99.65 E-value=3.2e-15 Score=102.41 Aligned_cols=97 Identities=24% Similarity=0.292 Sum_probs=79.1
Q ss_pred chHHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhhhcCCC--------------------------ceeeccCCC
Q 044216 28 DFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL--------------------------NLAGSSGNL 81 (154)
Q Consensus 28 ~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~c~~--------------------------ni~~~~~~~ 81 (154)
++++++|+.||.+|..++.++|+||++|+..|+.||+.++..+.. ||..+ ..
T Consensus 3 ~~e~~~l~~iN~~R~~~Gl~pL~~~~~L~~~A~~hA~~ma~~~~~~H~~~~~~~~~~r~~~~g~~~~~~gENi~~g--~~ 80 (127)
T TIGR02909 3 AEEKRVVELVNAERAKNGLKPLKADPELSKVARLKSEDMRDKNYFSHTSPTYGSPFDMMKKFGISYRMAGENIAYG--NS 80 (127)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHhCCcccccCCCCCCHHHHHHHcCCCcccceeeeecc--CC
Confidence 467889999999999999999999999999999999999854322 33322 23
Q ss_pred ChHHHHHHHHhhhccCCCCCCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCCCEEEEEEc
Q 044216 82 SGADVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNY 142 (154)
Q Consensus 82 ~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~~~~~vC~Y 142 (154)
.+..+++.|++. .+|+.+|+|++.+++|||++.+.+|+.+.|-.|
T Consensus 81 ~~~~~v~~W~~S----------------~gH~~nil~~~~~~~Gvg~~~~~~g~~y~~q~F 125 (127)
T TIGR02909 81 TVEAVHNAWMNS----------------PGHRANILNPNYTEIGVGYVEGGSGGIYWTQMF 125 (127)
T ss_pred CHHHHHHHHHcC----------------HhHHHHHcCCCcCeEeEEEEeCCCCCeEEEEEe
Confidence 677888999742 589999999999999999999887766666544
No 13
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.
Probab=99.46 E-value=9.5e-13 Score=88.46 Aligned_cols=94 Identities=26% Similarity=0.345 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhhhcCCC--------------------------ceeeccCCCChH
Q 044216 31 QDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIASCNL--------------------------NLAGSSGNLSGA 84 (154)
Q Consensus 31 ~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~c~~--------------------------ni~~~~~~~~~~ 84 (154)
+.+++.+|.+|..+++++|+||.+|+..|+.+|+.++..... |+..+ ...+.
T Consensus 2 ~~~~~~iN~~R~~~gl~pl~~~~~l~~~A~~~a~~~~~~~~~~h~~~~~~~~~~~~~~~g~~~~~~~eni~~~--~~~~~ 79 (122)
T cd05379 2 QEALELINAYRAQNGLPPLTWDPALAAAAQAHARDMAANGYFSHTGPDGSSPFDRARAAGYPYSSAGENIAYG--YSTAE 79 (122)
T ss_pred hHHHHHHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhcCccCCcCCCCCCHHHHHHHcCCCcCccchhhccc--CCCHH
Confidence 578999999999999999999999999999999998733221 11111 11578
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCccchhHHHHHHHhCCeeeEEEEEeCCCCEEEEEEc
Q 044216 85 DVVGLWVSEKADYDYNSNSCNAGKVCGHYTHVVWRNSVRIGCAKFRCNYGGTSIGCNY 142 (154)
Q Consensus 85 ~~v~~W~~e~~~y~~~~~~~~~~~~~~~f~q~vw~~t~~vGCa~~~c~~~~~~~vC~Y 142 (154)
++++.|+++ .+|+.+|+++..+++|||+....++..+.|..|
T Consensus 80 ~~~~~w~~~----------------~~H~~~ll~~~~~~~Gvg~~~~~~~~~y~~~~f 121 (122)
T cd05379 80 AAVDGWMNS----------------PGHRANILNPDYTEVGVGVAYGGDGGYYWVQVF 121 (122)
T ss_pred HHHHHHhCC----------------HhHHHHHcCCCcceeeEEEEeCCCCCeEEEEec
Confidence 889999743 679999999999999999999877767777665
No 14
>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]
Probab=98.70 E-value=1.1e-07 Score=70.24 Aligned_cols=44 Identities=27% Similarity=0.483 Sum_probs=40.4
Q ss_pred CCchHHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhhhc
Q 044216 26 AQDFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQQIAS 69 (154)
Q Consensus 26 ~~~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~~~~~ 69 (154)
.+++.+.+++.+|++|..+++++|+||.+|+..|+.+++.++..
T Consensus 77 ~~~~~~~~~~~~N~~R~~~~l~~L~~n~~L~~~A~~~a~~m~~~ 120 (207)
T COG2340 77 LAQFEKAVVAETNQERAKHGLPPLAWNATLAKAARNHARDMAKN 120 (207)
T ss_pred cchhHHHHHHHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHc
Confidence 45778889999999999999999999999999999999988853
No 15
>PF11054 Surface_antigen: Sporozoite TA4 surface antigen; InterPro: IPR021288 This family of proteins is a Eukaryotic family of surface antigens. One of the better characterised members of the family is the sporulated TA4 antigen. The TA4 gene encodes a single polypeptide of 25 kDa which contains a 17 and a 8kDa polypeptide [].
Probab=90.83 E-value=2.2 Score=32.26 Aligned_cols=124 Identities=15% Similarity=0.173 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhhCCCC----------Ccc-c-CHHHHHHHHHHHHhhh---hcCCC--------------ceeecc--
Q 044216 30 PQDYVNAHNAARAQVGVN----------PVK-W-DESIAAFARSYASQQI---ASCNL--------------NLAGSS-- 78 (154)
Q Consensus 30 ~~~il~~hN~~R~~~~m~----------~L~-W-d~~La~~Aq~~a~~~~---~~c~~--------------ni~~~~-- 78 (154)
.-++|+..|..|...++. +|. . +.+| .....|-+-|. ..-.. .....+
T Consensus 35 ~~~CL~E~NaaReAAGL~~F~~A~~~~~~Lp~~~~~e~-~~~t~W~~iC~~l~pt~~~~~~~~~~~~pf~~GTyAf~~lt 113 (254)
T PF11054_consen 35 SVECLSEMNAAREAAGLANFTEATSDDQKLPEPGSEEL-TDDTLWKKICEHLIPTQAEPAAEASKLNPFKDGTYAFKSLT 113 (254)
T ss_pred chhHHHHHHHHHHhcCchhhHhhcCCcccCCCCCchhc-cchhhHHHHHHHhcCCCCcchhhccccCcCCCCceEeeecc
Confidence 467999999999998832 111 2 2333 55567777554 11000 122222
Q ss_pred -CCCChHHHHHHHHhhhccCCCCCCCCC------CCccchhHHHHHHHhCCe-eeEEEEEeCCC----------------
Q 044216 79 -GNLSGADVVGLWVSEKADYDYNSNSCN------AGKVCGHYTHVVWRNSVR-IGCAKFRCNYG---------------- 134 (154)
Q Consensus 79 -~~~~~~~~v~~W~~e~~~y~~~~~~~~------~~~~~~~f~q~vw~~t~~-vGCa~~~c~~~---------------- 134 (154)
+..+..++|+.|-...++++--.++.. ++.+.-.|..+-..+... .-|.+..|...
T Consensus 114 ~~~~dCk~aVdYWKaafknF~glPPs~~~~~~lYndqdnVSFVALYNPs~~atAdC~vvTCt~tt~~~~~~~~~~~d~~~ 193 (254)
T PF11054_consen 114 DEKPDCKEAVDYWKAAFKNFTGLPPSKTAANKLYNDQDNVSFVALYNPSSSATADCRVVTCTQTTSNTAGGSRLQGDSDS 193 (254)
T ss_pred CCCCChHHHHHHHHHHHhhcCCCCCChhhccccccCCcceeEEEEeCCCCCCcceeEEEeCCCCCccCCCcccccCCCcc
Confidence 345789999999887777654222221 122223334444433332 45999999541
Q ss_pred ----CEEEEEEcCCCCc-cCCCCCC
Q 044216 135 ----GTSIGCNYASPGN-VVGVKPY 154 (154)
Q Consensus 135 ----~~~~vC~Y~p~gn-~~g~~~Y 154 (154)
++.++|.-.|..- ..|..||
T Consensus 194 ~~~~gyAliCkT~P~Al~~~~saPF 218 (254)
T PF11054_consen 194 ESKTGYALICKTMPAALASDGSAPF 218 (254)
T ss_pred cccceEEEEEecCchhhcCCCCCCC
Confidence 5789999999655 5566665
No 16
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=88.11 E-value=0.27 Score=31.89 Aligned_cols=23 Identities=30% Similarity=0.153 Sum_probs=9.8
Q ss_pred CCCCCcchHHHHHHHHHHHhhcCC
Q 044216 1 MAFSKDIPSLVLFCLMGLALALPS 24 (154)
Q Consensus 1 ~~~~~~~~~l~~l~~~~~~~~~~~ 24 (154)
|+ |.++++|.++|+++|++.+..
T Consensus 1 Ma-SK~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHhhh
Confidence 55 444444444443444444333
No 17
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=62.60 E-value=16 Score=22.56 Aligned_cols=17 Identities=6% Similarity=-0.044 Sum_probs=7.0
Q ss_pred CCCCCchHHHHHHHHHH
Q 044216 23 PSRAQDFPQDYVNAHNA 39 (154)
Q Consensus 23 ~~~~~~~~~~il~~hN~ 39 (154)
..+++++++.+-+.++.
T Consensus 34 ~gLs~~d~~~L~~L~~~ 50 (75)
T PF06667_consen 34 QGLSEEDEQRLQELYEQ 50 (75)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 33444444444433333
No 18
>PF15240 Pro-rich: Proline-rich
Probab=60.33 E-value=4.4 Score=29.30 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=10.3
Q ss_pred chHHHHHHHHHHHhhcCC
Q 044216 7 IPSLVLFCLMGLALALPS 24 (154)
Q Consensus 7 ~~~l~~l~~~~~~~~~~~ 24 (154)
|++||.+.||+|+.+...
T Consensus 2 LlVLLSvALLALSSAQ~~ 19 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQST 19 (179)
T ss_pred hhHHHHHHHHHhhhcccc
Confidence 455555666666655444
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=57.80 E-value=5.5 Score=31.22 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=23.6
Q ss_pred HHHHHHhCCeeeEEEEEeCCCCEEEEEEcCCCCcc
Q 044216 114 THVVWRNSVRIGCAKFRCNYGGTSIGCNYASPGNV 148 (154)
Q Consensus 114 ~q~vw~~t~~vGCa~~~c~~~~~~~vC~Y~p~gn~ 148 (154)
..+||+.-|.---....-.. .+++.|.|+|.||.
T Consensus 78 klIvWDs~TtnK~haipl~s-~WVMtCA~sPSg~~ 111 (343)
T KOG0286|consen 78 KLIVWDSFTTNKVHAIPLPS-SWVMTCAYSPSGNF 111 (343)
T ss_pred eEEEEEcccccceeEEecCc-eeEEEEEECCCCCe
Confidence 45778877765554443322 58999999999885
No 20
>KOG3017 consensus Defense-related protein containing SCP domain [Function unknown]
Probab=49.31 E-value=14 Score=27.09 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=18.8
Q ss_pred hcCCCCCchHHHHHHHHHHHHhhCC
Q 044216 21 ALPSRAQDFPQDYVNAHNAARAQVG 45 (154)
Q Consensus 21 ~~~~~~~~~~~~il~~hN~~R~~~~ 45 (154)
....++...+..+++.||++|+.+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (225)
T KOG3017|consen 22 SSAQFDASLVRQILDAHNNLRSEIL 46 (225)
T ss_pred cccccCcchhhhhhhhcHHHHHHHH
Confidence 4445555666669999999999876
No 21
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=44.04 E-value=74 Score=21.98 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=22.3
Q ss_pred CCCCchHHHHHHHHHHHHhhCCCCCcc
Q 044216 24 SRAQDFPQDYVNAHNAARAQVGVNPVK 50 (154)
Q Consensus 24 ~~~~~~~~~il~~hN~~R~~~~m~~L~ 50 (154)
.++.+..++-+...+.+|..+.+++=.
T Consensus 32 ~Ltg~Y~~DT~~Vi~tlr~~i~lpkd~ 58 (135)
T TIGR03044 32 RLTGDYVEDTLAVIQTLREAIDLPDDD 58 (135)
T ss_pred cccchHHHHHHHHHHHHHHHHcCCCCC
Confidence 366688999999999999999986543
No 22
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=39.62 E-value=31 Score=30.59 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=34.9
Q ss_pred cCCCCCchHHHHHHHHHHHHhhCC----------------------CCCcccCHHHHHHHHHHHHhhh
Q 044216 22 LPSRAQDFPQDYVNAHNAARAQVG----------------------VNPVKWDESIAAFARSYASQQI 67 (154)
Q Consensus 22 ~~~~~~~~~~~il~~hN~~R~~~~----------------------m~~L~Wd~~La~~Aq~~a~~~~ 67 (154)
.+...-.+|+.+++.+|.-+.... |-.|-||..||.+|+...-++.
T Consensus 777 ~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~G 844 (901)
T KOG4439|consen 777 TGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMG 844 (901)
T ss_pred cCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhc
Confidence 334444778999999999877321 6688899999999998876443
No 23
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=38.38 E-value=61 Score=26.98 Aligned_cols=15 Identities=13% Similarity=0.290 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHhh
Q 044216 52 DESIAAFARSYASQQ 66 (154)
Q Consensus 52 d~~La~~Aq~~a~~~ 66 (154)
++++.+++|+.|+.-
T Consensus 82 ~d~~~~~~qqiAn~~ 96 (514)
T PF11336_consen 82 NDDATEMRQQIANAQ 96 (514)
T ss_pred hHHHHHHHHHHHhhh
Confidence 889999999999843
No 24
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=38.03 E-value=69 Score=21.57 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=12.6
Q ss_pred HHHHHHHHhhCCCCCccc
Q 044216 34 VNAHNAARAQVGVNPVKW 51 (154)
Q Consensus 34 l~~hN~~R~~~~m~~L~W 51 (154)
.-.||+-|++-++.++.-
T Consensus 19 ~~~~~rRR~r~G~~P~~g 36 (130)
T PF12273_consen 19 FYCHNRRRRRRGLQPIYG 36 (130)
T ss_pred HHHHHHHHhhcCCCCcCC
Confidence 446888888877666653
No 25
>PRK09458 pspB phage shock protein B; Provisional
Probab=36.94 E-value=90 Score=19.27 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=8.9
Q ss_pred CCCCCchHHHHHHHHHHHH
Q 044216 23 PSRAQDFPQDYVNAHNAAR 41 (154)
Q Consensus 23 ~~~~~~~~~~il~~hN~~R 41 (154)
..+++++++.+-+..+..+
T Consensus 34 ~~Ls~~d~~~L~~L~~~A~ 52 (75)
T PRK09458 34 QGLSQEEQQRLAQLTEKAE 52 (75)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 3445555555544444433
No 26
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=36.53 E-value=57 Score=20.08 Aligned_cols=6 Identities=33% Similarity=0.838 Sum_probs=2.5
Q ss_pred cchHHH
Q 044216 6 DIPSLV 11 (154)
Q Consensus 6 ~~~~l~ 11 (154)
.+|+++
T Consensus 7 ~~Plii 12 (75)
T TIGR02976 7 AIPLII 12 (75)
T ss_pred HHHHHH
Confidence 344333
No 27
>PRK14861 tatA twin arginine translocase protein A; Provisional
Probab=32.67 E-value=1.1e+02 Score=18.01 Aligned_cols=43 Identities=14% Similarity=0.238 Sum_probs=24.6
Q ss_pred CCCCCcchHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhh
Q 044216 1 MAFSKDIPSLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQ 43 (154)
Q Consensus 1 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~il~~hN~~R~~ 43 (154)
|.+..+++=+++++++++.++-+.--.+.-+.+=.....+|+.
T Consensus 1 M~~~ig~~ElliI~vi~llvfGp~kLP~l~r~~G~~~~~fk~~ 43 (61)
T PRK14861 1 MFSNIGFPGLILILVVALIIFGPKKLPELGKALGKTLREFKKA 43 (61)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 4444555656666666666655554445555555556666654
No 28
>COG1318 Predicted transcriptional regulators [Transcription]
Probab=30.46 E-value=44 Score=24.16 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=17.3
Q ss_pred CCCcccCHHHHHHHHHHHH
Q 044216 46 VNPVKWDESIAAFARSYAS 64 (154)
Q Consensus 46 m~~L~Wd~~La~~Aq~~a~ 64 (154)
..+|+|.++|+..|-..|.
T Consensus 39 ~~~lTWvdSLavAAga~ar 57 (182)
T COG1318 39 YERLTWVDSLAVAAGALAR 57 (182)
T ss_pred ccccchhhHHHHHHHHHHH
Confidence 5688999999999999988
No 29
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=29.89 E-value=1.3e+02 Score=22.23 Aligned_cols=32 Identities=9% Similarity=0.114 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHh
Q 044216 28 DFPQDYVNAHNAARAQVGVNPVKWDESIAAFARSYASQ 65 (154)
Q Consensus 28 ~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~Aq~~a~~ 65 (154)
.+++.+-....++|.. .+|.+|++.-+++.++
T Consensus 32 ~E~D~L~~I~~rl~~~------e~sGel~~~~~~~~~r 63 (202)
T TIGR02743 32 AEPDMLEVIEQRLKRL------EQSGELKAMQQRFQSR 63 (202)
T ss_pred cchHHHHHHHHHHHhh------hhCchHHHHHHHHHHH
Confidence 3344444445555554 7888888777766554
No 30
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=29.32 E-value=1.2e+02 Score=19.41 Aligned_cols=43 Identities=9% Similarity=0.213 Sum_probs=24.1
Q ss_pred CCCC-CcchHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhh
Q 044216 1 MAFS-KDIPSLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQ 43 (154)
Q Consensus 1 ~~~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~il~~hN~~R~~ 43 (154)
|-|| .+++=+++++++++.++-+.--.+.-+.+=.....+|+.
T Consensus 1 m~mF~iG~~ElliIlvVaLlvfGP~KLP~lar~lGk~i~~fkk~ 44 (90)
T PRK14857 1 MNIFGIGLPEMAVILVIALLVFGPKKLPEIGRSLGKTLKGFQEA 44 (90)
T ss_pred CCcccccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 3344 344446666666666665555555555566666666654
No 31
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=27.97 E-value=73 Score=18.75 Aligned_cols=16 Identities=19% Similarity=0.499 Sum_probs=7.2
Q ss_pred CcchHHHHHHHHHHHh
Q 044216 5 KDIPSLVLFCLMGLAL 20 (154)
Q Consensus 5 ~~~~~l~~l~~~~~~~ 20 (154)
+++..+.+|++.++++
T Consensus 3 ~Kl~vialLC~aLva~ 18 (65)
T PF10731_consen 3 SKLIVIALLCVALVAI 18 (65)
T ss_pred chhhHHHHHHHHHHHH
Confidence 4455444444444443
No 32
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=27.95 E-value=1.1e+02 Score=20.27 Aligned_cols=40 Identities=13% Similarity=0.289 Sum_probs=21.2
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhhC
Q 044216 5 KDIPSLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQV 44 (154)
Q Consensus 5 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~il~~hN~~R~~~ 44 (154)
.+++=|++++++++.++-+.--.+.-+.+=...+++|+..
T Consensus 4 iG~~ElliIlvVallvfGPkKLPelar~lGk~i~~fk~~~ 43 (108)
T PRK14858 4 IGMPELIVILVIALIVIGPQKLPDLARSLGRGLAEFKKAT 43 (108)
T ss_pred ccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544444444455555556666553
No 33
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=25.13 E-value=1.2e+02 Score=17.39 Aligned_cols=29 Identities=14% Similarity=0.112 Sum_probs=12.7
Q ss_pred cchHHHHHHHHHHHhhcCCCCCchHHHHHH
Q 044216 6 DIPSLVLFCLMGLALALPSRAQDFPQDYVN 35 (154)
Q Consensus 6 ~~~~l~~l~~~~~~~~~~~~~~~~~~~il~ 35 (154)
.+.+|++.||+.+...+.. ..+..+++.+
T Consensus 23 DlmTLLl~fFVlL~s~s~~-d~~k~~~~~~ 51 (58)
T PF13677_consen 23 DLMTLLLAFFVLLFSMSSV-DKEKFEEVAQ 51 (58)
T ss_pred HHHHHHHHHHHHHHHHHhC-CHHHHHHHHH
Confidence 3455555554444443333 3333344433
No 34
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=25.13 E-value=2.5e+02 Score=19.81 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHhhh-hcCCC
Q 044216 52 DESIAAFARSYASQQI-ASCNL 72 (154)
Q Consensus 52 d~~La~~Aq~~a~~~~-~~c~~ 72 (154)
|.+.+..|...+++.. ..|..
T Consensus 31 ~~~qe~ra~~Lt~~LRCp~CQN 52 (153)
T COG3088 31 DPAQEQRARALTEELRCPQCQN 52 (153)
T ss_pred CHHHHHHHHHHHHhcCCCcCCC
Confidence 6788888888888665 45553
No 35
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=23.91 E-value=87 Score=18.12 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=14.8
Q ss_pred cccCHHHHHHHHHHHHhhhhcCC
Q 044216 49 VKWDESIAAFARSYASQQIASCN 71 (154)
Q Consensus 49 L~Wd~~La~~Aq~~a~~~~~~c~ 71 (154)
|+|...-++.|+..|.- .|+
T Consensus 1 l~Wt~~Aa~eAeavAai---~CS 20 (56)
T PF04863_consen 1 LSWTLRAAEEAEAVAAI---SCS 20 (56)
T ss_dssp -STTHHHHHHHHHHHTS-----T
T ss_pred CchHHHHHHHHHHhhcC---CcC
Confidence 68999999999999873 465
No 36
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=23.70 E-value=86 Score=18.50 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=15.6
Q ss_pred chHHHHHHHHHHHHhhCC
Q 044216 28 DFPQDYVNAHNAARAQVG 45 (154)
Q Consensus 28 ~~~~~il~~hN~~R~~~~ 45 (154)
+..+++++..|.+|++-+
T Consensus 24 ~~Pe~Vi~iIN~lR~keG 41 (63)
T PF03295_consen 24 EDPEEVINIINELRNKEG 41 (63)
T ss_pred cCHHHHHHHHHHhhhccC
Confidence 567889999999999876
No 37
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=22.64 E-value=42 Score=18.64 Aligned_cols=8 Identities=38% Similarity=0.932 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 044216 10 LVLFCLMG 17 (154)
Q Consensus 10 l~~l~~~~ 17 (154)
|++||+++
T Consensus 7 llLlfflG 14 (46)
T PF03032_consen 7 LLLLFFLG 14 (46)
T ss_pred HHHHHHHH
Confidence 33334343
No 38
>PLN00064 photosystem II protein Psb27; Provisional
Probab=21.50 E-value=1.3e+02 Score=21.41 Aligned_cols=29 Identities=3% Similarity=0.282 Sum_probs=23.5
Q ss_pred cCCCCCchHHHHHHHHHHHHhhCCCCCcc
Q 044216 22 LPSRAQDFPQDYVNAHNAARAQVGVNPVK 50 (154)
Q Consensus 22 ~~~~~~~~~~~il~~hN~~R~~~~m~~L~ 50 (154)
....+.+..++-+...+.+|..+.|+.=.
T Consensus 59 ~a~~~g~Y~~DT~aVi~~lr~tI~L~~dd 87 (166)
T PLN00064 59 FAASDEEYVKETKDVIGKVRSTINMDKTD 87 (166)
T ss_pred hhccCCChHHHHHHHHHHHHHHHcCCCCC
Confidence 33456688999999999999999987644
No 39
>PF14208 DUF4320: Domain of unknown function (DUF4320)
Probab=21.40 E-value=1.6e+02 Score=19.62 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhCCC-CCcccCHH
Q 044216 33 YVNAHNAARAQVGV-NPVKWDES 54 (154)
Q Consensus 33 il~~hN~~R~~~~m-~~L~Wd~~ 54 (154)
-.+..+.+|.+.+. +..+|+.|
T Consensus 46 ~~~~~~~l~~k~g~~~~i~w~~e 68 (116)
T PF14208_consen 46 TVDRIEDLSEKTGLDPMISWSCE 68 (116)
T ss_pred HHHHHHHHHHHhCCCCCceEeec
Confidence 34555555555553 23445543
No 40
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=20.87 E-value=57 Score=23.46 Aligned_cols=33 Identities=9% Similarity=0.169 Sum_probs=21.3
Q ss_pred ChHHHHHHHHhhhccCCCCCCCCCCCccchhHH
Q 044216 82 SGADVVGLWVSEKADYDYNSNSCNAGKVCGHYT 114 (154)
Q Consensus 82 ~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~f~ 114 (154)
.....+.+||.+....+-..-+.--+.+..+|.
T Consensus 106 ~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi 138 (205)
T KOG1673|consen 106 STLNSIKEWYRQARGLNKTAIPILVGTKYDLFI 138 (205)
T ss_pred HHHHHHHHHHHHHhccCCccceEEeccchHhhh
Confidence 556789999999988776553333333444443
No 41
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=20.35 E-value=2e+02 Score=16.99 Aligned_cols=41 Identities=7% Similarity=0.135 Sum_probs=24.3
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhhCC
Q 044216 5 KDIPSLVLFCLMGLALALPSRAQDFPQDYVNAHNAARAQVG 45 (154)
Q Consensus 5 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~il~~hN~~R~~~~ 45 (154)
.+++=|++++++++.++-+.--.+.-+.+=.....+|....
T Consensus 4 iG~~ElliIlvv~LlvfGp~kLP~l~r~lGk~i~~frk~~~ 44 (63)
T PRK14859 4 IGMPELIVILVIVLIVFGAGKLPEIGGGLGKSIKNFKKATS 44 (63)
T ss_pred ccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhc
Confidence 34555666665666665555545555666666777776543
Done!