BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044218
(436 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 128/483 (26%), Positives = 203/483 (42%), Gaps = 79/483 (16%)
Query: 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPH------NIR 68
HV+ +PYP +GH+NP+ + KLL R ITFV TE + P +
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLR--GFHITFVNTEYNHKRLLKSRGPKAFDGFTDFN 67
Query: 69 FRTLPNTIPSEHGRAN---DFAGFLEAVFTKMEAPFXXXXXXXXXXXXXQPAAAVTAIIA 125
F ++P+ + G + D ++V P+ P VT +++
Sbjct: 68 FESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPP---VTCLVS 124
Query: 126 DTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERNGHFPFD----LSEKGDEL- 180
D + + + +P ++ SA HF G PF L+ E
Sbjct: 125 DCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETK 184
Query: 181 VDCIPGLEPTKLADFPTIFHGAGRK--ILHAALQSASKVSKAQYLLLSSVYKLEAKTIDA 238
VD IPGL+ +L D +L ++ A +V+K +LL++ +LE+ I+A
Sbjct: 185 VDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINA 244
Query: 239 LKEEFS-------FPVLLAQFCTSH---------WE-----------------------A 259
L P LL Q H W+ +
Sbjct: 245 LSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGS 304
Query: 260 FYSVSSAQMDEIIAGIRNSGVRYLWVTRGD---------TSRFKDGHADDRGIVVPWCDQ 310
++ Q+ E G+ N +LW+ R D +S F + AD RG++ WC Q
Sbjct: 305 TTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIAD-RGLIASWCPQ 363
Query: 311 LRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKP 370
+VL H SIGGF THCG NST ES+ AGVPML +P F DQ + + I +W+ G +
Sbjct: 364 DKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEI--- 420
Query: 371 EIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFL 430
+ V R+E+ +L+ + D+ K+M ++A E+++ E G S NL+ +
Sbjct: 421 ----DTNVKREELAKLINEV--IAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVI 474
Query: 431 KDI 433
KD+
Sbjct: 475 KDV 477
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 121/477 (25%), Positives = 215/477 (45%), Gaps = 82/477 (17%)
Query: 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILIT-FVVTEEWLGFIGS------QSKPHNI 67
++ +P PG GH+ + KLL + ++ IT F + + F S S+P I
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQ-I 69
Query: 68 RFRTLPNT--IPSEHGRANDF--AGFLEAVFTKMEAPFXXXXXXXXXXXXXQPAAAVTAI 123
+ LP P E ++ +F FLE++ ++A + V +
Sbjct: 70 QLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTIL-----------SNKVVGL 118
Query: 124 IADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERNGHFPFDLSEKGDELVDC 183
+ D + ++DVGN IP T + S+ L R FD S++ +L++
Sbjct: 119 VLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLM--LSLKNRQIEEVFDDSDRDHQLLN- 175
Query: 184 IPGLE---PTK-LADFPTIFHGAGRKILHAALQSASKVSKAQYLLLSSVYKLEAKTIDAL 239
IPG+ P+ L D F+ G I + L A + + +++++ LE +IDAL
Sbjct: 176 IPGISNQVPSNVLPD--ACFNKDGGYIAYYKL--AERFRDTKGIIVNTFSDLEQSSIDAL 231
Query: 240 KEE-------FSFPVLL------------AQ------------------FCTSHWEAFYS 262
+ ++ LL AQ C S
Sbjct: 232 YDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGV--S 289
Query: 263 VSSAQMDEIIAGIRNSGVRYLWVTRGDTSRFKDG-----HADDRGIVVPWCDQLRVLCHA 317
+Q+ EI G+++SGVR+LW + F +G + +G++ W Q+ VL H
Sbjct: 290 FGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHK 349
Query: 318 SIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERL 377
+IGGF +HCG NS +ES++ GVP+LT+P++ +Q N+ ++V++W G ++ +
Sbjct: 350 AIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDV 409
Query: 378 VTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDIS 434
V +EI + +K MD +S + K+ +E++E+ R A + GSS+ ++ + DI+
Sbjct: 410 VAAEEIEKGLKDLMDKDS----IVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDIT 462
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 121/477 (25%), Positives = 215/477 (45%), Gaps = 82/477 (17%)
Query: 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILIT-FVVTEEWLGFIGS------QSKPHNI 67
++ +P PG GH+ + KLL + ++ IT F + + F S S+P I
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQ-I 69
Query: 68 RFRTLPNT--IPSEHGRANDF--AGFLEAVFTKMEAPFXXXXXXXXXXXXXQPAAAVTAI 123
+ LP P E ++ +F FLE++ ++A + V +
Sbjct: 70 QLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTIL-----------SNKVVGL 118
Query: 124 IADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERNGHFPFDLSEKGDELVDC 183
+ D + ++DVGN IP T + S+ L R FD S++ +L++
Sbjct: 119 VLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLM--LSLKNRQIEEVFDDSDRDHQLLN- 175
Query: 184 IPGLE---PTK-LADFPTIFHGAGRKILHAALQSASKVSKAQYLLLSSVYKLEAKTIDAL 239
IPG+ P+ L D F+ G I + L A + + +++++ LE +IDAL
Sbjct: 176 IPGISNQVPSNVLPD--ACFNKDGGYIAYYKL--AERFRDTKGIIVNTFSDLEQSSIDAL 231
Query: 240 KEE-------FSFPVLL------------AQ------------------FCTSHWEAFYS 262
+ ++ LL AQ C S
Sbjct: 232 YDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGV--S 289
Query: 263 VSSAQMDEIIAGIRNSGVRYLWVTRGDTSRFKDG-----HADDRGIVVPWCDQLRVLCHA 317
+Q+ EI G+++SGVR+LW + F +G + +G++ W Q+ VL H
Sbjct: 290 FGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHK 349
Query: 318 SIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERL 377
+IGGF +HCG NS +ES++ GVP+LT+P++ +Q N+ ++V++W G ++ +
Sbjct: 350 AIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDV 409
Query: 378 VTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDIS 434
V +EI + +K MD +S + K+ +E++E+ R A + GSS+ ++ + DI+
Sbjct: 410 VAAEEIEKGLKDLMDKDS----IVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDIT 462
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 114/470 (24%), Positives = 195/470 (41%), Gaps = 75/470 (15%)
Query: 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPN 74
HV +P PG GH+ P++ K LV + +TFV+ E G SK +LP+
Sbjct: 8 HVAIIPSPGMGHLIPLVEFAKRLVHLH-GLTVTFVIAGE-----GPPSKAQRTVLDSLPS 61
Query: 75 TIPSEHGRANDFAGFLEAVFTKMEAPFXXXXXXXXXXXXX------QPAAAVTAIIADTY 128
+I S D + T++E+ + TA++ D +
Sbjct: 62 SISSVFLPPVDLTDLSSS--TRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLF 119
Query: 129 LPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERNGHFPFDLSEKGDELVDCIPGLE 188
DV ++P + +A V S F H L+ F E + L+ +PG
Sbjct: 120 GTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEF--RELTEPLM--LPGCV 175
Query: 189 PTKLADFPTIFHGAGRKILHAALQSASKVSKAQYLLLSSVYKLEAKTIDALKEEF----- 243
P DF L + + +A+ +L+++ ++LE I AL+E
Sbjct: 176 PVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPP 235
Query: 244 SFPV--------------------------LLAQFCTSHWEAFYSVSSAQMDEIIAGIRN 277
+PV L + + +++ Q++E+ G+ +
Sbjct: 236 VYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLAD 295
Query: 278 SGVRYLWVTRGDT----SRFKDGHAD----------------DRGIVVP-WCDQLRVLCH 316
S R+LWV R + S + D H+ RG V+P W Q +VL H
Sbjct: 296 SEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAH 355
Query: 317 ASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASER 376
S GGF THCG NST+ES+ +G+P++ +PL+ +Q N+ + +D + R P +
Sbjct: 356 PSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALR---PRAGDDG 412
Query: 377 LVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNL 426
LV R+E+ +VK M+ +E K + + +E++E ++G+S L
Sbjct: 413 LVRREEVARVVKGLME--GEEGKGVRNKMKELKEAACRVLKDDGTSTKAL 460
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 148/352 (42%), Gaps = 48/352 (13%)
Query: 120 VTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHF-ELLERNGHFPFDLSEKGD 178
V+ ++AD ++ + D+ + WT S + E+ E+ G + + D
Sbjct: 113 VSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVS--GIQGRED 170
Query: 179 ELVDCIPGLEPTKLADFPT-IFHGAGRKILHAALQSASKV-SKAQYLLLSSVYKLEAKTI 236
EL++ IPG+ + D I G + L +V KA + ++S +L+
Sbjct: 171 ELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLT 230
Query: 237 DALKEEFSFPVLLAQF------------------------CTSHWEAFYSVSSAQMDEII 272
+ LK + + + F + + +F +V++ E++
Sbjct: 231 NDLKSKLKTYLNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVV 290
Query: 273 A---GIRNSGVRYLWVTRGDTSR--FKDGHADDR---GIVVPWCDQLRVLCHASIGGFWT 324
A + S V ++W R D +R +G + G+VVPW Q VL H ++G F T
Sbjct: 291 ALSEALEASRVPFIWSLR-DKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVT 349
Query: 325 HCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVT-RDEI 383
HCG NS ES+ GVP++ P F DQ N + + + G R++ L++ D+I
Sbjct: 350 HCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQI 409
Query: 384 TELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDISR 435
L+ ++ K++ + R ++E A GSS N + +S+
Sbjct: 410 ---------LSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLVSK 452
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/464 (20%), Positives = 190/464 (40%), Gaps = 53/464 (11%)
Query: 7 QVKPTSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPH- 65
++ +L HV L +P H P++++ K + + P + +F T + S+S
Sbjct: 7 EMNGNNLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFL 66
Query: 66 -NIRFRTLPNTIPSEHGRANDFAGFLEAVFTKMEAPFXXXXXXXXXXXXXQPAAAVTAII 124
NI++ + + +P + + + E +F ++A + +T ++
Sbjct: 67 PNIKYYNVHDGLPKGYVSSGNPR---EPIFLFIKA-MQENFKHVIDEAVAETGKNITCLV 122
Query: 125 ADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELL-ERNGHFPFDLSEKGD-ELVD 182
D + + D+ + LWT + +L+ E+ G E D + +D
Sbjct: 123 TDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGS-----KEVHDVKSID 177
Query: 183 CIPGLEPTKLADFP------------TIFHGAGRKILHA---ALQSASKVS-------KA 220
+PG K +D P T+ H G ++ A A+ S + + +
Sbjct: 178 VLPGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNS 237
Query: 221 QYLLLSSVYKLEAKTID-ALKEEFSFPVLLAQFCTSH--WEAFYSVSSAQMDEIIA---G 274
++ LL +V T + +E L Q S + +F SV + E+ A
Sbjct: 238 KFKLLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAES 297
Query: 275 IRNSGVRYLWVTRGD-TSRFKDG---HADDRGIVVPWCDQLRVLCHASIGGFWTHCGLNS 330
+ G ++W RGD + G +G +V W Q+ +L H+S+G F TH G NS
Sbjct: 298 LEECGFPFIWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNS 357
Query: 331 TIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRF 390
+E + GVPM++ P F DQ N+ + G V + E + E+T
Sbjct: 358 VLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELT------ 411
Query: 391 MDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDIS 434
++S++ M ++ +++E +A +NG+S + ++ ++
Sbjct: 412 --MSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVT 453
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 307 WCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWR 366
W QL +L AS F TH G+ ST+E+L VPM+ P +Q N+++IV+ G
Sbjct: 312 WVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE-LGLGRH 368
Query: 367 VKKPEIASERL 377
+ + ++ +E+L
Sbjct: 369 IPRDQVTAEKL 379
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEW 54
H+ PG GHVNP + I + LV+R +++ +T+E+
Sbjct: 14 HISFFNIPGHGHVNPSLGIVQELVAR--GHRVSYAITDEF 51
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 292 RFKDGHADDRGI---VVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFW 348
RF D G+ + W Q +L H F TH G N E++Y G+P + PLF
Sbjct: 57 RFDGNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFA 116
Query: 349 DQVPN 353
DQ N
Sbjct: 117 DQPDN 121
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 15/118 (12%)
Query: 307 WCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWR 366
W QL +L A + F TH G + E L PM+ P DQ N+ D G
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNA-----DMLQGLG 342
Query: 367 VKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQ-EICREAAAENGSSI 423
V + +L T + +L++ D+ E+++R R +Q E+ +E + +
Sbjct: 343 VAR------KLATEEATADLLRETALALVDD-PEVARRLRRIQAEMAQEGGTRRAADL 393
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 307 WCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQ 359
W ++VL A++ TH G + E+LY G P++ P +D P ++++ Q
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQ 354
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 307 WCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQ 359
W ++VL A++ TH G + E+LY G P++ P +D P ++++ Q
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQ 354
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 22/26 (84%), Gaps = 1/26 (3%)
Query: 367 VKKPEIASERLVTRDEITELVKRFMD 392
+++PE+A +RL TR +IT LV+RFMD
Sbjct: 129 LRRPEMA-QRLKTRAKITSLVRRFMD 153
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 22/26 (84%), Gaps = 1/26 (3%)
Query: 367 VKKPEIASERLVTRDEITELVKRFMD 392
+++PE+A +RL TR +IT LV+RFMD
Sbjct: 129 LRRPEMA-QRLKTRAKITSLVRRFMD 153
>pdb|4AS5|A Chain A, Structure Of Mouse Inositol Monophosphatase 1
pdb|4AS5|B Chain B, Structure Of Mouse Inositol Monophosphatase 1
pdb|4AS5|C Chain C, Structure Of Mouse Inositol Monophosphatase 1
pdb|4AS5|D Chain D, Structure Of Mouse Inositol Monophosphatase 1
Length = 277
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 21 YPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRF 69
Y GR N KL VS+Q DI + +VTE +GS KP +R
Sbjct: 131 YTGRKGKGAFCNGQKLQVSQQEDITKSLLVTE-----LGSSRKPETLRI 174
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 307 WCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWD 349
W Q +L H + H G +T+ +L AGVP L+FP D
Sbjct: 299 WVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPWAGD 339
>pdb|1UE8|A Chain A, Crystal Structure Of Thermophilic Cytochrome P450 From
Sulfolobus Tokodaii
pdb|3B4X|A Chain A, Crystal Structure Analysis Of Sulfolobus Tokodaii Strain7
Cytochrom P450
Length = 367
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 331 TIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRF 390
IES +P+L P+ K+ V+DW ++ + RL DEI + +++
Sbjct: 114 VIESFAIPLPILVISKMLGINPDVKK-VKDWS--------DLVALRLGRADEIFSIGRKY 164
Query: 391 MDLNSDERKEM-SKRAREVQEICREAAAENGSSITNLDAFL 430
++L S +KE+ S++ +E+ ++ + A N S + F+
Sbjct: 165 LELISFSKKELDSRKGKEIVDLTGKIANSNLSELEKEGYFI 205
>pdb|2DQ3|A Chain A, Crystal Structure Of Aq_298
pdb|2DQ3|B Chain B, Crystal Structure Of Aq_298
Length = 425
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 16/78 (20%)
Query: 368 KKPEIASERLVTRD-EITELVKRFMDLNSDERK----------EMSKRAREVQEICREAA 416
+KP+ ERL TRD E+ LV + ++L+ R+ E +K ++E+ ++ RE
Sbjct: 9 EKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKRE-- 66
Query: 417 AENGSSITNLDAFLKDIS 434
G T + +K++
Sbjct: 67 ---GKDTTEIQNRVKELK 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,679,072
Number of Sequences: 62578
Number of extensions: 490370
Number of successful extensions: 1268
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1237
Number of HSP's gapped (non-prelim): 29
length of query: 436
length of database: 14,973,337
effective HSP length: 102
effective length of query: 334
effective length of database: 8,590,381
effective search space: 2869187254
effective search space used: 2869187254
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)