Query 044218
Match_columns 436
No_of_seqs 129 out of 1491
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 12:37:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02448 UDP-glycosyltransfera 100.0 5E-63 1.1E-67 485.6 43.0 413 9-435 6-457 (459)
2 PLN02410 UDP-glucoronosyl/UDP- 100.0 7.2E-62 1.6E-66 472.3 44.4 402 12-435 6-450 (451)
3 PLN02555 limonoid glucosyltran 100.0 2.3E-61 5E-66 470.3 42.8 406 12-435 6-469 (480)
4 PLN02562 UDP-glycosyltransfera 100.0 4.7E-61 1E-65 468.1 42.1 401 9-434 2-448 (448)
5 PLN02173 UDP-glucosyl transfer 100.0 1.3E-60 2.9E-65 461.2 42.1 392 12-434 4-447 (449)
6 PLN02210 UDP-glucosyl transfer 100.0 1.6E-60 3.4E-65 464.8 41.3 400 10-435 5-455 (456)
7 PLN02992 coniferyl-alcohol glu 100.0 7.8E-60 1.7E-64 458.3 40.9 400 12-435 4-469 (481)
8 PLN02863 UDP-glucoronosyl/UDP- 100.0 5.2E-59 1.1E-63 455.4 40.4 404 10-435 6-471 (477)
9 PLN02152 indole-3-acetate beta 100.0 5.5E-59 1.2E-63 450.7 39.8 392 13-434 3-455 (455)
10 PLN02207 UDP-glycosyltransfera 100.0 1.1E-58 2.4E-63 449.5 41.2 406 12-434 2-464 (468)
11 PLN02554 UDP-glycosyltransfera 100.0 1.2E-58 2.6E-63 456.1 41.6 407 12-435 1-478 (481)
12 PLN03015 UDP-glucosyl transfer 100.0 2.2E-58 4.8E-63 445.5 42.1 403 13-434 3-467 (470)
13 PLN02534 UDP-glycosyltransfera 100.0 1.2E-58 2.6E-63 451.8 40.5 407 8-435 3-486 (491)
14 PLN00164 glucosyltransferase; 100.0 2.1E-58 4.6E-63 452.6 42.0 404 12-435 2-473 (480)
15 PLN02670 transferase, transfer 100.0 9E-58 1.9E-62 443.6 39.3 405 8-435 1-465 (472)
16 PLN03007 UDP-glucosyltransfera 100.0 1.4E-57 3.1E-62 449.2 38.9 403 11-435 3-480 (482)
17 PLN02208 glycosyltransferase f 100.0 3E-57 6.5E-62 438.9 39.9 386 11-435 2-439 (442)
18 PLN03004 UDP-glycosyltransfera 100.0 2.3E-57 5E-62 439.0 38.6 392 12-424 2-450 (451)
19 PLN02764 glycosyltransferase f 100.0 1.9E-56 4.1E-61 430.8 40.0 387 12-435 4-445 (453)
20 PLN02167 UDP-glycosyltransfera 100.0 2.1E-56 4.6E-61 439.5 40.9 411 12-435 2-472 (475)
21 PLN00414 glycosyltransferase f 100.0 3.1E-56 6.8E-61 432.3 38.6 384 11-435 2-440 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 7.9E-42 1.7E-46 337.8 31.7 352 13-414 20-448 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.9E-43 4.1E-48 355.1 6.9 350 15-414 2-425 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 2.2E-39 4.8E-44 315.6 31.2 340 19-414 1-375 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 3E-39 6.5E-44 316.1 28.6 345 14-414 1-387 (401)
26 COG1819 Glycosyl transferases, 100.0 3.2E-38 7E-43 304.0 21.3 368 13-433 1-398 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 2.1E-35 4.5E-40 296.9 24.5 357 13-413 5-437 (496)
28 PRK12446 undecaprenyldiphospho 99.9 1.2E-25 2.7E-30 213.9 24.4 316 13-407 1-335 (352)
29 COG0707 MurG UDP-N-acetylgluco 99.9 4.3E-23 9.3E-28 194.1 25.3 307 14-393 1-324 (357)
30 PF13528 Glyco_trans_1_3: Glyc 99.9 4.5E-22 9.7E-27 188.6 23.8 294 14-390 1-317 (318)
31 TIGR00661 MJ1255 conserved hyp 99.9 1.1E-20 2.3E-25 178.9 23.7 302 15-393 1-314 (321)
32 PRK00726 murG undecaprenyldiph 99.8 5.4E-17 1.2E-21 156.4 28.5 337 13-434 1-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.7 9.1E-16 2E-20 147.4 21.2 303 15-393 1-324 (350)
34 TIGR01133 murG undecaprenyldip 99.7 2.6E-14 5.5E-19 137.3 26.6 309 14-403 1-326 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.6 7.4E-15 1.6E-19 142.1 17.3 105 311-430 262-383 (385)
36 COG4671 Predicted glycosyl tra 99.6 3.3E-14 7.1E-19 128.0 18.8 315 10-392 6-364 (400)
37 TIGR03590 PseG pseudaminic aci 99.6 7.3E-14 1.6E-18 128.9 20.2 87 267-356 185-278 (279)
38 PRK13609 diacylglycerol glucos 99.6 9.3E-13 2E-17 128.0 27.6 156 247-433 205-369 (380)
39 PRK00025 lpxB lipid-A-disaccha 99.5 1E-12 2.2E-17 127.8 17.0 108 311-434 256-376 (380)
40 PF04101 Glyco_tran_28_C: Glyc 99.5 1.5E-14 3.3E-19 123.4 1.3 105 279-393 31-144 (167)
41 PRK13608 diacylglycerol glucos 99.4 8.6E-11 1.9E-15 114.4 27.3 152 258-433 210-369 (391)
42 TIGR03492 conserved hypothetic 99.4 7.2E-12 1.6E-16 121.4 19.0 130 246-393 207-364 (396)
43 PF03033 Glyco_transf_28: Glyc 99.4 5.2E-14 1.1E-18 116.3 1.1 125 16-150 1-131 (139)
44 PLN02605 monogalactosyldiacylg 99.4 2.5E-10 5.5E-15 110.9 24.3 102 279-393 241-347 (382)
45 cd03823 GT1_ExpE7_like This fa 99.2 5.7E-09 1.2E-13 99.9 26.4 113 266-393 207-329 (359)
46 cd03814 GT1_like_2 This family 99.2 2.3E-08 5E-13 96.0 29.1 142 266-433 213-363 (364)
47 COG3980 spsG Spore coat polysa 99.2 2.3E-09 5E-14 94.2 19.1 285 14-409 1-304 (318)
48 cd03800 GT1_Sucrose_synthase T 99.1 1E-07 2.2E-12 93.0 27.2 80 299-393 282-368 (398)
49 cd03808 GT1_cap1E_like This fa 99.0 4.5E-07 9.7E-12 86.4 27.3 114 265-393 203-329 (359)
50 PLN02871 UDP-sulfoquinovose:DA 99.0 4.7E-07 1E-11 90.4 28.1 111 268-393 278-400 (465)
51 cd03818 GT1_ExpC_like This fam 99.0 1.5E-06 3.2E-11 85.0 29.9 80 299-393 280-366 (396)
52 cd03817 GT1_UGDG_like This fam 99.0 9.4E-08 2E-12 91.8 20.8 79 299-393 258-343 (374)
53 cd03801 GT1_YqgM_like This fam 98.9 4E-07 8.7E-12 86.9 24.2 112 298-433 254-373 (374)
54 cd03794 GT1_wbuB_like This fam 98.9 2.5E-07 5.3E-12 89.3 22.2 113 266-393 236-365 (394)
55 cd04962 GT1_like_5 This family 98.9 1.2E-06 2.6E-11 84.6 26.7 114 299-435 252-370 (371)
56 PF04007 DUF354: Protein of un 98.9 9.1E-07 2E-11 82.9 24.2 300 14-391 1-308 (335)
57 PRK10307 putative glycosyl tra 98.9 2.1E-06 4.6E-11 84.4 27.2 114 300-434 284-406 (412)
58 PRK05749 3-deoxy-D-manno-octul 98.9 3.1E-06 6.7E-11 83.6 28.2 80 301-393 303-388 (425)
59 cd03816 GT1_ALG1_like This fam 98.9 8E-07 1.7E-11 87.4 23.5 119 12-147 2-128 (415)
60 cd03825 GT1_wcfI_like This fam 98.8 3.2E-06 6.9E-11 81.3 24.9 113 299-434 243-363 (365)
61 cd03805 GT1_ALG2_like This fam 98.8 1.4E-05 3E-10 78.0 28.8 79 299-393 279-364 (392)
62 TIGR03449 mycothiol_MshA UDP-N 98.8 8.5E-06 1.8E-10 79.9 26.9 80 299-393 282-368 (405)
63 cd03819 GT1_WavL_like This fam 98.8 3.2E-06 7E-11 81.0 23.3 115 264-393 199-330 (355)
64 cd03796 GT1_PIG-A_like This fa 98.7 3.4E-06 7.3E-11 82.6 23.1 78 299-393 249-333 (398)
65 cd03821 GT1_Bme6_like This fam 98.7 3E-05 6.5E-10 74.3 28.7 78 299-393 261-345 (375)
66 cd03820 GT1_amsD_like This fam 98.7 9E-06 2E-10 77.0 24.7 90 299-408 234-329 (348)
67 cd03798 GT1_wlbH_like This fam 98.7 1.8E-05 3.9E-10 75.7 26.9 80 299-393 258-344 (377)
68 TIGR00236 wecB UDP-N-acetylglu 98.7 1.2E-06 2.5E-11 84.8 17.5 117 267-405 213-341 (365)
69 cd03802 GT1_AviGT4_like This f 98.7 5.8E-06 1.3E-10 78.6 21.6 135 268-433 186-334 (335)
70 cd03795 GT1_like_4 This family 98.7 5.6E-06 1.2E-10 79.4 21.5 114 267-393 205-332 (357)
71 PRK09922 UDP-D-galactose:(gluc 98.6 7.1E-06 1.5E-10 79.1 22.0 112 268-394 197-325 (359)
72 cd04951 GT1_WbdM_like This fam 98.6 4.7E-05 1E-09 73.0 27.3 110 299-433 244-358 (360)
73 cd03799 GT1_amsK_like This is 98.6 2.2E-05 4.7E-10 75.2 24.3 80 299-393 235-327 (355)
74 TIGR02468 sucrsPsyn_pln sucros 98.6 7.5E-05 1.6E-09 79.2 29.5 113 299-433 547-668 (1050)
75 cd03786 GT1_UDP-GlcNAc_2-Epime 98.6 4.5E-06 9.7E-11 80.6 18.3 112 265-393 214-337 (363)
76 cd05844 GT1_like_7 Glycosyltra 98.6 2.3E-05 4.9E-10 75.6 22.8 80 299-393 244-336 (367)
77 cd04955 GT1_like_6 This family 98.6 3.3E-05 7.3E-10 74.2 24.0 139 268-433 208-362 (363)
78 cd03811 GT1_WabH_like This fam 98.5 1.2E-05 2.7E-10 76.1 20.2 80 299-393 245-332 (353)
79 cd03822 GT1_ecORF704_like This 98.5 7E-05 1.5E-09 71.8 25.7 109 299-432 246-364 (366)
80 cd03807 GT1_WbnK_like This fam 98.5 1.8E-05 4E-10 75.5 21.3 109 299-432 250-363 (365)
81 TIGR03088 stp2 sugar transfera 98.5 2.3E-05 4.9E-10 76.0 20.8 112 300-434 255-371 (374)
82 TIGR03087 stp1 sugar transfera 98.4 8.7E-06 1.9E-10 79.6 16.7 110 299-433 279-394 (397)
83 cd03812 GT1_CapH_like This fam 98.4 2.4E-05 5.3E-10 75.1 19.4 79 299-393 248-331 (358)
84 TIGR02472 sucr_P_syn_N sucrose 98.4 0.00057 1.2E-08 67.8 28.4 114 299-433 316-438 (439)
85 TIGR02149 glgA_Coryne glycogen 98.4 0.00046 1E-08 67.1 27.3 118 301-435 261-386 (388)
86 PRK14089 ipid-A-disaccharide s 98.4 8.3E-05 1.8E-09 70.4 20.4 90 311-413 230-333 (347)
87 COG1519 KdtA 3-deoxy-D-manno-o 98.3 0.0012 2.6E-08 62.6 27.2 318 16-393 51-386 (419)
88 cd03809 GT1_mtfB_like This fam 98.2 0.00014 3.1E-09 69.6 19.7 90 298-409 251-347 (365)
89 TIGR02470 sucr_synth sucrose s 98.2 0.0056 1.2E-07 63.8 31.4 80 299-391 618-707 (784)
90 PLN02275 transferase, transfer 98.1 0.00083 1.8E-08 65.0 21.1 121 11-148 2-134 (371)
91 cd03792 GT1_Trehalose_phosphor 98.0 0.0012 2.6E-08 63.9 21.6 112 299-435 251-371 (372)
92 PRK15179 Vi polysaccharide bio 98.0 0.0031 6.8E-08 65.4 23.7 114 299-433 573-691 (694)
93 COG1817 Uncharacterized protei 97.9 0.0023 5.1E-08 57.9 19.2 294 23-393 9-314 (346)
94 PRK01021 lpxB lipid-A-disaccha 97.9 0.0023 5.1E-08 64.1 21.1 78 311-393 483-571 (608)
95 PLN02316 synthase/transferase 97.9 0.048 1E-06 58.7 31.6 117 299-433 899-1031(1036)
96 KOG3349 Predicted glycosyltran 97.9 7E-05 1.5E-09 59.8 7.6 97 270-369 26-134 (170)
97 TIGR02095 glgA glycogen/starch 97.9 0.0065 1.4E-07 60.9 24.0 146 266-434 307-471 (473)
98 cd03806 GT1_ALG11_like This fa 97.9 0.0043 9.3E-08 61.1 22.1 79 299-394 304-393 (419)
99 TIGR03568 NeuC_NnaA UDP-N-acet 97.9 0.00074 1.6E-08 65.1 16.2 108 264-392 218-338 (365)
100 PLN00142 sucrose synthase 97.9 0.014 3E-07 61.0 26.2 77 300-391 642-730 (815)
101 PLN02846 digalactosyldiacylgly 97.8 0.0042 9.1E-08 61.2 21.1 72 304-393 288-363 (462)
102 PRK00654 glgA glycogen synthas 97.8 0.018 3.9E-07 57.6 25.7 106 275-392 307-427 (466)
103 PRK15484 lipopolysaccharide 1, 97.8 0.00074 1.6E-08 65.6 15.2 113 299-434 256-376 (380)
104 PF02684 LpxB: Lipid-A-disacch 97.8 0.0062 1.3E-07 58.3 20.9 102 310-422 254-364 (373)
105 PRK15427 colanic acid biosynth 97.8 0.00044 9.5E-09 67.8 13.6 113 299-434 278-404 (406)
106 COG0381 WecB UDP-N-acetylgluco 97.7 0.0021 4.5E-08 60.5 15.8 77 300-393 262-341 (383)
107 cd03804 GT1_wbaZ_like This fam 97.6 0.00021 4.6E-09 68.6 8.8 112 266-393 208-326 (351)
108 cd03791 GT1_Glycogen_synthase_ 97.6 0.018 3.9E-07 57.8 22.8 115 266-392 312-441 (476)
109 cd01635 Glycosyltransferase_GT 97.6 0.0043 9.4E-08 54.8 16.5 82 266-349 120-216 (229)
110 cd04946 GT1_AmsK_like This fam 97.6 0.0014 3.1E-08 64.3 14.2 111 300-430 289-406 (407)
111 PLN02501 digalactosyldiacylgly 97.6 0.012 2.7E-07 59.8 20.5 76 301-394 602-682 (794)
112 PRK15490 Vi polysaccharide bio 97.6 0.072 1.6E-06 53.4 25.6 112 299-433 454-573 (578)
113 PLN02949 transferase, transfer 97.5 0.033 7.1E-07 55.4 22.6 79 299-393 334-422 (463)
114 PF02350 Epimerase_2: UDP-N-ac 97.4 0.00044 9.5E-09 66.0 8.0 108 266-393 200-318 (346)
115 PF00534 Glycos_transf_1: Glyc 97.3 0.0012 2.6E-08 56.1 8.3 81 298-393 71-158 (172)
116 PRK09814 beta-1,6-galactofuran 97.2 0.0039 8.4E-08 59.4 12.0 111 298-431 205-331 (333)
117 PF13844 Glyco_transf_41: Glyc 97.2 0.0044 9.5E-08 60.6 12.1 152 260-434 294-461 (468)
118 PRK10125 putative glycosyl tra 97.1 0.31 6.7E-06 47.8 26.3 99 268-387 258-365 (405)
119 PRK10422 lipopolysaccharide co 97.0 0.19 4.1E-06 48.3 21.1 111 11-146 3-114 (352)
120 cd04950 GT1_like_1 Glycosyltra 97.0 0.031 6.6E-07 54.2 15.7 124 244-393 205-340 (373)
121 COG3914 Spy Predicted O-linked 96.9 0.033 7.1E-07 54.9 14.9 153 258-434 437-608 (620)
122 PF13692 Glyco_trans_1_4: Glyc 96.9 0.0043 9.4E-08 50.3 7.2 106 271-393 24-135 (135)
123 cd04949 GT1_gtfA_like This fam 96.8 0.014 3.1E-07 56.3 11.9 83 299-393 260-345 (372)
124 cd03813 GT1_like_3 This family 96.8 0.061 1.3E-06 54.0 16.1 111 299-431 353-472 (475)
125 COG0763 LpxB Lipid A disacchar 96.7 0.14 3.1E-06 48.3 16.4 111 313-433 261-379 (381)
126 cd03789 GT1_LPS_heptosyltransf 96.6 0.05 1.1E-06 50.3 13.6 104 15-145 1-105 (279)
127 TIGR02918 accessory Sec system 96.5 0.03 6.6E-07 56.3 12.1 88 299-393 375-467 (500)
128 TIGR02201 heptsyl_trn_III lipo 96.4 0.52 1.1E-05 45.0 19.3 108 15-146 1-109 (344)
129 COG5017 Uncharacterized conser 96.4 0.0064 1.4E-07 47.9 4.7 82 279-369 30-123 (161)
130 PRK10916 ADP-heptose:LPS hepto 96.2 0.9 1.9E-05 43.5 19.8 105 14-145 1-106 (348)
131 PHA01633 putative glycosyl tra 96.1 0.035 7.5E-07 52.5 9.2 85 298-393 199-307 (335)
132 PF13477 Glyco_trans_4_2: Glyc 96.0 0.1 2.2E-06 42.3 10.8 101 15-147 1-106 (139)
133 KOG4626 O-linked N-acetylgluco 96.0 0.042 9E-07 54.5 9.3 153 261-434 769-935 (966)
134 TIGR02193 heptsyl_trn_I lipopo 95.8 0.6 1.3E-05 44.0 16.5 47 15-61 1-47 (319)
135 PRK10964 ADP-heptose:LPS hepto 95.8 0.59 1.3E-05 44.2 16.2 48 14-61 1-48 (322)
136 PF13524 Glyco_trans_1_2: Glyc 95.7 0.13 2.8E-06 38.5 9.2 83 325-430 9-91 (92)
137 PHA01630 putative group 1 glyc 95.7 0.24 5.2E-06 47.0 13.0 111 307-434 197-329 (331)
138 PRK14098 glycogen synthase; Pr 95.6 0.17 3.7E-06 50.9 12.1 112 266-391 323-449 (489)
139 COG0859 RfaF ADP-heptose:LPS h 95.5 0.87 1.9E-05 43.3 16.2 263 13-345 1-277 (334)
140 TIGR02195 heptsyl_trn_II lipop 95.5 2.4 5.1E-05 40.3 19.7 104 15-145 1-105 (334)
141 PF12000 Glyco_trans_4_3: Gkyc 94.5 0.5 1.1E-05 39.9 10.2 96 41-149 1-97 (171)
142 PF13579 Glyco_trans_4_4: Glyc 94.2 0.13 2.9E-06 42.3 6.1 95 28-147 5-103 (160)
143 TIGR02400 trehalose_OtsA alpha 93.5 0.67 1.4E-05 46.1 10.5 104 306-435 342-456 (456)
144 PLN02939 transferase, transfer 93.3 1.4 3E-05 47.2 12.7 84 299-392 836-930 (977)
145 cd03788 GT1_TPS Trehalose-6-Ph 91.5 0.77 1.7E-05 45.8 8.2 103 305-433 346-459 (460)
146 PF08660 Alg14: Oligosaccharid 90.3 0.79 1.7E-05 38.8 5.9 114 18-147 2-128 (170)
147 PF01975 SurE: Survival protei 90.3 1 2.2E-05 39.1 6.7 116 14-149 1-134 (196)
148 COG1618 Predicted nucleotide k 89.9 2.8 6.1E-05 34.8 8.4 58 11-74 3-60 (179)
149 PF13439 Glyco_transf_4: Glyco 89.8 2.9 6.2E-05 34.8 9.3 32 23-56 11-42 (177)
150 PRK10017 colanic acid biosynth 88.5 2.8 6.1E-05 41.2 9.1 144 267-434 261-423 (426)
151 TIGR03713 acc_sec_asp1 accesso 88.3 1.7 3.6E-05 44.0 7.6 74 300-393 409-488 (519)
152 PLN03063 alpha,alpha-trehalose 88.1 1.7 3.6E-05 46.5 7.8 100 312-435 371-477 (797)
153 PF04464 Glyphos_transf: CDP-G 87.8 0.79 1.7E-05 44.2 4.8 144 268-428 219-366 (369)
154 COG0003 ArsA Predicted ATPase 84.8 6.3 0.00014 37.1 8.9 43 13-57 1-44 (322)
155 PRK13932 stationary phase surv 84.7 22 0.00047 32.3 11.9 114 12-148 4-133 (257)
156 PRK14099 glycogen synthase; Pr 84.5 15 0.00032 37.0 12.1 39 12-52 2-46 (485)
157 COG4370 Uncharacterized protei 84.5 2.9 6.2E-05 38.3 6.1 91 299-407 293-388 (412)
158 PF06258 Mito_fiss_Elm1: Mitoc 84.1 37 0.00081 31.9 17.6 94 247-348 150-259 (311)
159 COG3660 Predicted nucleoside-d 83.8 33 0.00072 31.0 15.8 89 247-344 165-271 (329)
160 TIGR02919 accessory Sec system 82.0 7.1 0.00015 38.6 8.4 113 264-393 290-411 (438)
161 PF02441 Flavoprotein: Flavopr 81.9 1.7 3.6E-05 34.9 3.4 45 14-61 1-45 (129)
162 PF09314 DUF1972: Domain of un 81.3 34 0.00073 29.4 12.9 57 13-73 1-62 (185)
163 COG0438 RfaG Glycosyltransfera 80.6 20 0.00043 33.1 10.9 79 300-393 257-342 (381)
164 PF02951 GSH-S_N: Prokaryotic 80.3 3.4 7.5E-05 32.5 4.5 40 14-55 1-43 (119)
165 PRK14501 putative bifunctional 79.6 4.8 0.0001 42.8 6.8 110 304-435 346-462 (726)
166 PF02844 GARS_N: Phosphoribosy 78.9 8.7 0.00019 29.2 6.1 33 14-51 1-33 (100)
167 PF04413 Glycos_transf_N: 3-De 78.3 4.2 9.1E-05 35.0 4.9 101 15-147 22-125 (186)
168 cd03793 GT1_Glycogen_synthase_ 77.9 8.2 0.00018 39.2 7.4 80 310-393 468-552 (590)
169 cd02070 corrinoid_protein_B12- 76.4 7.8 0.00017 33.8 6.1 39 12-52 81-119 (201)
170 PRK00346 surE 5'(3')-nucleotid 76.1 61 0.0013 29.3 11.8 96 29-148 15-124 (250)
171 PRK13934 stationary phase surv 75.5 62 0.0014 29.5 11.7 111 14-148 1-127 (266)
172 COG1484 DnaC DNA replication p 75.3 5.5 0.00012 36.2 5.1 48 12-61 104-151 (254)
173 PRK13935 stationary phase surv 75.2 63 0.0014 29.3 11.6 39 14-56 1-39 (253)
174 TIGR00715 precor6x_red precorr 75.2 19 0.00041 32.7 8.4 35 14-55 1-35 (256)
175 COG1703 ArgK Putative periplas 75.0 30 0.00065 32.0 9.4 113 10-147 48-173 (323)
176 PRK13933 stationary phase surv 74.8 66 0.0014 29.2 11.8 39 14-56 1-39 (253)
177 PRK13982 bifunctional SbtC-lik 74.4 12 0.00025 37.3 7.3 40 12-53 255-306 (475)
178 PF02142 MGS: MGS-like domain 74.4 3.1 6.6E-05 31.3 2.7 85 30-145 2-95 (95)
179 PF06564 YhjQ: YhjQ protein; 74.2 33 0.00071 30.9 9.5 37 13-51 1-38 (243)
180 PRK05647 purN phosphoribosylgl 73.7 23 0.0005 30.8 8.3 54 13-73 1-58 (200)
181 PRK13931 stationary phase surv 73.6 46 0.00099 30.3 10.4 99 30-148 16-129 (261)
182 PRK02261 methylaspartate mutas 73.6 6.6 0.00014 31.9 4.6 42 12-55 2-43 (137)
183 cd02067 B12-binding B12 bindin 72.8 5.4 0.00012 31.3 3.9 36 15-52 1-36 (119)
184 smart00851 MGS MGS-like domain 72.7 21 0.00046 26.3 6.9 79 30-144 2-89 (90)
185 PRK07313 phosphopantothenoylcy 72.4 4.7 0.0001 34.6 3.6 44 13-59 1-44 (182)
186 TIGR00087 surE 5'/3'-nucleotid 72.0 42 0.00091 30.2 9.8 98 29-148 15-128 (244)
187 PF05159 Capsule_synth: Capsul 71.4 11 0.00025 34.4 6.3 77 267-346 142-226 (269)
188 PF12146 Hydrolase_4: Putative 71.2 12 0.00026 27.0 5.1 35 13-49 15-49 (79)
189 PRK08305 spoVFB dipicolinate s 69.5 7 0.00015 33.8 4.0 45 12-58 4-48 (196)
190 PRK05920 aromatic acid decarbo 69.3 5.7 0.00012 34.7 3.5 45 12-59 2-46 (204)
191 PF04127 DFP: DNA / pantothena 69.2 2.8 6E-05 36.0 1.6 39 13-53 3-53 (185)
192 PRK08057 cobalt-precorrin-6x r 68.9 35 0.00075 30.9 8.6 37 13-56 2-38 (248)
193 PRK02797 4-alpha-L-fucosyltran 68.9 85 0.0018 29.3 11.0 80 300-390 206-291 (322)
194 PRK13789 phosphoribosylamine-- 68.3 19 0.0004 35.6 7.3 34 12-52 3-36 (426)
195 PRK06029 3-octaprenyl-4-hydrox 68.3 5.5 0.00012 34.2 3.2 45 13-60 1-46 (185)
196 COG0052 RpsB Ribosomal protein 67.4 37 0.00081 30.3 8.1 33 119-151 156-190 (252)
197 cd07039 TPP_PYR_POX Pyrimidine 66.7 44 0.00095 28.0 8.4 74 269-345 4-96 (164)
198 cd01980 Chlide_reductase_Y Chl 66.0 33 0.00073 33.7 8.6 26 119-147 350-375 (416)
199 COG2910 Putative NADH-flavin r 66.0 7.3 0.00016 33.2 3.3 36 14-55 1-36 (211)
200 PRK13196 pyrrolidone-carboxyla 65.7 20 0.00043 31.5 6.2 27 13-39 1-29 (211)
201 PRK13195 pyrrolidone-carboxyla 65.7 18 0.00038 32.0 5.9 27 13-39 1-29 (222)
202 PRK06732 phosphopantothenate-- 65.0 13 0.00028 33.2 5.1 37 14-52 1-49 (229)
203 COG3640 CooC CO dehydrogenase 64.8 74 0.0016 28.5 9.3 46 14-61 1-47 (255)
204 COG0496 SurE Predicted acid ph 64.7 50 0.0011 29.8 8.5 97 30-149 16-126 (252)
205 PF10933 DUF2827: Protein of u 63.7 39 0.00084 32.1 7.9 92 300-413 253-349 (364)
206 PF07429 Glyco_transf_56: 4-al 63.3 1.1E+02 0.0025 29.0 10.8 82 300-392 245-332 (360)
207 PF06722 DUF1205: Protein of u 63.2 20 0.00043 27.1 5.0 46 257-303 47-97 (97)
208 PF01075 Glyco_transf_9: Glyco 63.1 18 0.00039 32.4 5.7 78 263-344 121-208 (247)
209 KOG0780 Signal recognition par 62.9 35 0.00076 32.8 7.4 43 12-56 100-142 (483)
210 cd07037 TPP_PYR_MenD Pyrimidin 62.4 51 0.0011 27.5 7.9 27 320-346 62-94 (162)
211 TIGR02015 BchY chlorophyllide 62.1 38 0.00082 33.4 8.1 32 14-52 286-317 (422)
212 COG0541 Ffh Signal recognition 61.4 39 0.00085 33.0 7.7 42 13-56 100-141 (451)
213 PRK06249 2-dehydropantoate 2-r 60.6 15 0.00033 34.5 5.0 49 11-71 3-51 (313)
214 PF02571 CbiJ: Precorrin-6x re 60.6 21 0.00046 32.3 5.6 38 14-59 1-38 (249)
215 PRK11199 tyrA bifunctional cho 60.1 48 0.001 32.1 8.4 34 12-52 97-131 (374)
216 PRK10867 signal recognition pa 60.0 50 0.0011 32.6 8.4 42 13-56 100-142 (433)
217 KOG2941 Beta-1,4-mannosyltrans 59.6 1.6E+02 0.0034 28.1 10.9 126 10-153 9-142 (444)
218 cd00561 CobA_CobO_BtuR ATP:cor 58.8 1.1E+02 0.0023 25.6 9.2 96 15-129 4-105 (159)
219 PF00551 Formyl_trans_N: Formy 58.7 17 0.00036 31.1 4.5 34 14-52 1-36 (181)
220 COG4394 Uncharacterized protei 58.3 1.5E+02 0.0033 27.3 11.0 154 259-433 182-368 (370)
221 TIGR01425 SRP54_euk signal rec 58.3 67 0.0014 31.7 8.9 41 13-55 100-140 (429)
222 PRK07206 hypothetical protein; 58.0 35 0.00077 33.4 7.3 34 13-53 2-35 (416)
223 TIGR00064 ftsY signal recognit 58.0 75 0.0016 29.2 8.8 41 12-54 71-111 (272)
224 COG2109 BtuR ATP:corrinoid ade 57.4 99 0.0021 26.6 8.5 107 6-130 21-133 (198)
225 TIGR01285 nifN nitrogenase mol 57.4 61 0.0013 32.1 8.7 87 13-146 311-397 (432)
226 TIGR02852 spore_dpaB dipicolin 57.0 15 0.00033 31.5 3.8 41 14-56 1-41 (187)
227 PF02310 B12-binding: B12 bind 56.1 24 0.00052 27.5 4.7 36 15-52 2-37 (121)
228 PF00448 SRP54: SRP54-type pro 55.9 39 0.00085 29.3 6.3 39 15-55 3-41 (196)
229 cd00550 ArsA_ATPase Oxyanion-t 55.8 53 0.0011 29.8 7.5 38 16-55 3-40 (254)
230 COG0771 MurD UDP-N-acetylmuram 55.5 92 0.002 30.9 9.4 36 13-55 7-42 (448)
231 PF01210 NAD_Gly3P_dh_N: NAD-d 55.2 9.9 0.00022 31.6 2.4 32 15-53 1-32 (157)
232 TIGR02370 pyl_corrinoid methyl 55.2 25 0.00054 30.5 5.0 56 12-73 83-142 (197)
233 PF01470 Peptidase_C15: Pyrogl 54.7 27 0.00058 30.5 5.1 26 14-39 1-28 (202)
234 cd01974 Nitrogenase_MoFe_beta 54.6 47 0.001 32.9 7.4 25 119-146 377-401 (435)
235 PRK06988 putative formyltransf 54.2 61 0.0013 30.4 7.8 34 13-53 2-35 (312)
236 cd01425 RPS2 Ribosomal protein 54.1 34 0.00074 29.6 5.6 32 119-150 127-160 (193)
237 PF08433 KTI12: Chromatin asso 53.5 1.1E+02 0.0024 28.1 9.1 104 13-153 1-110 (270)
238 PRK06849 hypothetical protein; 53.1 28 0.0006 33.9 5.5 37 11-53 2-38 (389)
239 PF06506 PrpR_N: Propionate ca 52.6 15 0.00034 31.1 3.2 35 351-392 89-123 (176)
240 cd07035 TPP_PYR_POX_like Pyrim 52.5 57 0.0012 26.7 6.6 76 270-346 2-93 (155)
241 COG0297 GlgA Glycogen synthase 52.1 2.6E+02 0.0057 28.1 12.1 145 266-432 310-474 (487)
242 PRK14098 glycogen synthase; Pr 52.0 24 0.00052 35.6 5.0 40 11-52 3-48 (489)
243 KOG3339 Predicted glycosyltran 51.9 50 0.0011 28.1 5.8 37 17-53 41-77 (211)
244 cd01965 Nitrogenase_MoFe_beta_ 51.8 39 0.00086 33.3 6.4 25 119-146 371-395 (428)
245 PRK08229 2-dehydropantoate 2-r 51.4 14 0.0003 35.1 3.1 42 13-61 2-43 (341)
246 TIGR00959 ffh signal recogniti 51.2 89 0.0019 30.9 8.6 41 14-56 100-141 (428)
247 PLN02470 acetolactate synthase 50.7 55 0.0012 33.8 7.5 77 268-345 16-109 (585)
248 TIGR00173 menD 2-succinyl-5-en 50.5 71 0.0015 31.6 8.0 27 319-345 64-96 (432)
249 cd03115 SRP The signal recogni 50.4 1.4E+02 0.003 24.9 8.8 38 16-55 3-40 (173)
250 PRK09620 hypothetical protein; 50.0 21 0.00045 31.9 3.7 38 13-52 3-52 (229)
251 PRK08293 3-hydroxybutyryl-CoA 49.7 1.1E+02 0.0023 28.3 8.6 33 13-52 3-35 (287)
252 PLN02891 IMP cyclohydrolase 49.6 95 0.0021 31.3 8.3 62 5-78 14-77 (547)
253 PRK14619 NAD(P)H-dependent gly 49.5 33 0.00071 32.1 5.2 36 11-53 2-37 (308)
254 PRK13197 pyrrolidone-carboxyla 49.2 62 0.0013 28.6 6.5 27 13-39 1-29 (215)
255 cd01421 IMPCH Inosine monophos 49.1 73 0.0016 27.3 6.6 43 28-78 11-55 (187)
256 COG2185 Sbm Methylmalonyl-CoA 48.9 31 0.00068 28.0 4.2 39 11-51 10-48 (143)
257 PRK01175 phosphoribosylformylg 48.9 2E+02 0.0044 26.2 10.0 57 12-76 2-58 (261)
258 PF06925 MGDG_synth: Monogalac 48.7 48 0.001 27.8 5.6 24 26-49 1-25 (169)
259 KOG0853 Glycosyltransferase [C 48.2 18 0.0004 36.0 3.3 66 325-407 377-442 (495)
260 PF02776 TPP_enzyme_N: Thiamin 48.1 1.3E+02 0.0027 25.3 8.2 75 269-346 5-98 (172)
261 PRK05986 cob(I)alamin adenolsy 48.0 1.8E+02 0.0038 25.2 8.8 99 12-129 21-125 (191)
262 TIGR00750 lao LAO/AO transport 47.3 1.5E+02 0.0032 27.6 9.2 43 11-55 32-74 (300)
263 PF05693 Glycogen_syn: Glycoge 47.1 22 0.00049 36.2 3.8 93 308-411 461-565 (633)
264 PRK12921 2-dehydropantoate 2-r 47.1 23 0.0005 33.0 3.8 41 14-61 1-41 (305)
265 PRK06276 acetolactate synthase 47.0 43 0.00093 34.6 6.1 75 269-345 5-96 (586)
266 cd02071 MM_CoA_mut_B12_BD meth 46.6 33 0.00071 27.0 4.1 37 15-53 1-37 (122)
267 PF03446 NAD_binding_2: NAD bi 46.4 24 0.00051 29.5 3.4 31 13-50 1-31 (163)
268 PRK12311 rpsB 30S ribosomal pr 46.1 21 0.00046 33.6 3.3 33 119-151 152-186 (326)
269 TIGR02113 coaC_strep phosphopa 46.0 24 0.00053 30.0 3.4 43 14-59 1-43 (177)
270 PF05728 UPF0227: Uncharacteri 45.6 54 0.0012 28.2 5.5 32 121-152 61-93 (187)
271 PRK06718 precorrin-2 dehydroge 45.6 1.2E+02 0.0026 26.4 7.7 145 244-414 10-164 (202)
272 PRK13193 pyrrolidone-carboxyla 45.4 77 0.0017 27.8 6.5 26 14-39 1-28 (209)
273 TIGR02655 circ_KaiC circadian 45.4 52 0.0011 33.1 6.2 45 12-58 262-306 (484)
274 COG2874 FlaH Predicted ATPases 45.3 1.7E+02 0.0037 25.8 8.3 37 16-54 31-67 (235)
275 PF13499 EF-hand_7: EF-hand do 45.1 28 0.00062 23.6 3.1 53 374-432 13-65 (66)
276 PRK13194 pyrrolidone-carboxyla 44.9 73 0.0016 27.9 6.3 26 14-39 1-28 (208)
277 TIGR00460 fmt methionyl-tRNA f 44.7 1.2E+02 0.0026 28.5 8.1 33 14-53 1-33 (313)
278 COG2085 Predicted dinucleotide 44.6 37 0.00079 29.7 4.2 35 13-54 1-35 (211)
279 PF06506 PrpR_N: Propionate ca 44.6 39 0.00085 28.6 4.5 113 24-152 16-155 (176)
280 PTZ00345 glycerol-3-phosphate 44.2 1.2E+02 0.0026 29.3 8.1 36 12-54 10-52 (365)
281 cd00532 MGS-like MGS-like doma 44.0 1.2E+02 0.0025 23.4 6.8 85 26-146 10-105 (112)
282 PF07355 GRDB: Glycine/sarcosi 43.9 45 0.00097 31.6 5.0 28 119-146 80-117 (349)
283 PRK06522 2-dehydropantoate 2-r 43.3 21 0.00047 33.1 3.0 41 14-61 1-42 (304)
284 cd02037 MRP-like MRP (Multiple 43.3 1E+02 0.0022 25.7 6.9 31 20-52 7-37 (169)
285 COG4088 Predicted nucleotide k 43.1 32 0.00069 30.1 3.5 38 13-52 1-38 (261)
286 COG1066 Sms Predicted ATP-depe 42.9 9.7 0.00021 36.7 0.5 42 15-59 95-136 (456)
287 PRK14099 glycogen synthase; Pr 42.7 38 0.00082 34.1 4.7 109 273-393 318-447 (485)
288 PRK08322 acetolactate synthase 42.6 68 0.0015 32.8 6.7 27 319-345 64-96 (547)
289 PRK14618 NAD(P)H-dependent gly 42.5 35 0.00077 32.2 4.3 34 12-52 3-36 (328)
290 PRK11823 DNA repair protein Ra 42.2 21 0.00045 35.5 2.7 43 14-58 81-123 (446)
291 PF02350 Epimerase_2: UDP-N-ac 42.2 29 0.00063 33.2 3.7 40 97-146 55-97 (346)
292 PF10649 DUF2478: Protein of u 41.8 2.1E+02 0.0045 23.9 11.4 113 17-150 2-133 (159)
293 PRK13768 GTPase; Provisional 41.8 1.4E+02 0.003 27.1 7.9 40 13-54 2-41 (253)
294 TIGR03878 thermo_KaiC_2 KaiC d 41.8 85 0.0019 28.5 6.5 42 12-55 35-76 (259)
295 cd01121 Sms Sms (bacterial rad 41.8 21 0.00045 34.5 2.6 42 14-57 83-124 (372)
296 TIGR00347 bioD dethiobiotin sy 41.8 1.4E+02 0.003 24.7 7.5 27 21-49 6-32 (166)
297 PRK04940 hypothetical protein; 41.7 57 0.0012 27.8 4.9 33 119-151 60-93 (180)
298 PRK05579 bifunctional phosphop 41.7 33 0.00072 33.5 4.0 46 12-60 5-50 (399)
299 PRK12377 putative replication 41.6 41 0.00089 30.4 4.3 41 14-56 102-142 (248)
300 PRK06456 acetolactate synthase 41.6 69 0.0015 33.0 6.6 75 268-345 5-101 (572)
301 cd01424 MGS_CPS_II Methylglyox 41.6 1.6E+02 0.0034 22.5 7.5 85 25-146 10-101 (110)
302 TIGR02700 flavo_MJ0208 archaeo 41.3 31 0.00068 30.8 3.5 44 16-61 2-47 (234)
303 cd03466 Nitrogenase_NifN_2 Nit 41.2 1E+02 0.0022 30.5 7.4 25 119-146 372-396 (429)
304 TIGR02398 gluc_glyc_Psyn gluco 40.6 1.6E+02 0.0036 29.6 8.7 108 302-435 364-482 (487)
305 COG0223 Fmt Methionyl-tRNA for 40.6 81 0.0017 29.5 6.1 38 13-57 1-38 (307)
306 PLN02929 NADH kinase 40.5 1.4E+02 0.0031 27.8 7.7 97 264-393 32-137 (301)
307 COG0287 TyrA Prephenate dehydr 40.4 2E+02 0.0044 26.5 8.7 41 12-59 2-42 (279)
308 PF03693 RHH_2: Uncharacterise 40.4 62 0.0013 23.4 4.3 49 379-435 29-77 (80)
309 cd01141 TroA_d Periplasmic bin 40.3 44 0.00096 28.3 4.2 29 119-147 69-99 (186)
310 TIGR00421 ubiX_pad polyprenyl 40.0 25 0.00055 30.0 2.6 43 15-60 1-43 (181)
311 TIGR02195 heptsyl_trn_II lipop 39.9 1.5E+02 0.0032 28.0 8.2 100 13-148 174-278 (334)
312 PRK04328 hypothetical protein; 39.3 1.8E+02 0.004 26.1 8.3 44 12-57 22-65 (249)
313 cd01423 MGS_CPS_I_III Methylgl 39.1 1.7E+02 0.0037 22.6 7.1 87 26-145 11-106 (116)
314 PRK08266 hypothetical protein; 39.1 1.4E+02 0.003 30.6 8.3 75 268-345 7-101 (542)
315 COG0503 Apt Adenine/guanine ph 39.1 68 0.0015 27.3 5.1 28 119-146 53-82 (179)
316 COG1797 CobB Cobyrinic acid a, 39.0 2.4E+02 0.0051 27.8 9.0 39 15-55 2-42 (451)
317 PRK08155 acetolactate synthase 38.9 1.6E+02 0.0034 30.4 8.7 77 266-345 14-109 (564)
318 PLN02939 transferase, transfer 38.7 59 0.0013 35.4 5.5 42 10-53 478-525 (977)
319 PRK05632 phosphate acetyltrans 38.4 4.4E+02 0.0094 28.0 11.9 35 14-50 3-38 (684)
320 cd02069 methionine_synthase_B1 38.2 62 0.0014 28.5 4.9 40 12-53 87-126 (213)
321 TIGR00118 acolac_lg acetolacta 38.1 75 0.0016 32.6 6.2 76 269-345 5-97 (558)
322 PRK10416 signal recognition pa 38.0 2.2E+02 0.0048 26.8 8.8 42 12-55 113-154 (318)
323 PRK07710 acetolactate synthase 37.8 63 0.0014 33.3 5.6 27 319-345 79-111 (571)
324 TIGR00521 coaBC_dfp phosphopan 37.5 34 0.00073 33.3 3.3 46 12-60 2-47 (390)
325 COG0240 GpsA Glycerol-3-phosph 37.2 47 0.001 31.3 4.0 34 13-53 1-34 (329)
326 COG0552 FtsY Signal recognitio 37.1 1.7E+02 0.0037 27.7 7.6 42 13-56 139-180 (340)
327 TIGR00355 purH phosphoribosyla 37.1 1.1E+02 0.0024 30.7 6.7 43 28-78 11-55 (511)
328 TIGR00708 cobA cob(I)alamin ad 37.1 2.6E+02 0.0056 23.7 9.4 96 14-129 6-107 (173)
329 PF01695 IstB_IS21: IstB-like 37.0 36 0.00079 28.9 3.1 48 12-61 46-93 (178)
330 TIGR03880 KaiC_arch_3 KaiC dom 36.8 48 0.001 29.2 4.1 45 12-58 15-59 (224)
331 PF07015 VirC1: VirC1 protein; 36.7 85 0.0018 28.0 5.4 43 14-58 2-45 (231)
332 PRK06719 precorrin-2 dehydroge 36.5 54 0.0012 27.2 4.0 34 12-52 12-45 (157)
333 PRK13982 bifunctional SbtC-lik 36.4 54 0.0012 32.8 4.5 47 12-61 69-115 (475)
334 PRK09260 3-hydroxybutyryl-CoA 36.4 1.7E+02 0.0037 26.9 7.8 32 14-52 2-33 (288)
335 PF07991 IlvN: Acetohydroxy ac 36.3 22 0.00048 29.7 1.5 51 12-73 3-55 (165)
336 TIGR00639 PurN phosphoribosylg 36.2 2.8E+02 0.0061 23.8 9.6 51 14-73 1-57 (190)
337 COG2039 Pcp Pyrrolidone-carbox 36.1 1.2E+02 0.0026 26.0 5.8 26 14-39 1-28 (207)
338 KOG3062 RNA polymerase II elon 35.7 75 0.0016 28.2 4.7 38 13-52 1-39 (281)
339 PRK07525 sulfoacetaldehyde ace 35.7 1.3E+02 0.0028 31.2 7.4 79 266-345 7-101 (588)
340 cd07038 TPP_PYR_PDC_IPDC_like 35.5 61 0.0013 27.0 4.2 28 319-346 60-93 (162)
341 PRK08199 thiamine pyrophosphat 35.2 1.5E+02 0.0033 30.4 7.9 75 268-345 11-104 (557)
342 PRK08527 acetolactate synthase 35.2 96 0.0021 31.9 6.4 75 268-345 6-99 (563)
343 TIGR01285 nifN nitrogenase mol 35.1 1.3E+02 0.0029 29.7 7.1 80 264-346 319-399 (432)
344 PRK13234 nifH nitrogenase redu 34.7 75 0.0016 29.5 5.1 41 11-53 2-42 (295)
345 PLN03064 alpha,alpha-trehalose 34.5 1.3E+02 0.0029 32.9 7.4 100 312-435 455-561 (934)
346 PRK00094 gpsA NAD(P)H-dependen 34.3 49 0.0011 31.0 3.9 33 13-52 1-33 (325)
347 PRK05562 precorrin-2 dehydroge 34.3 2.8E+02 0.0061 24.6 8.2 145 244-414 25-179 (223)
348 TIGR00416 sms DNA repair prote 34.2 44 0.00095 33.3 3.6 43 14-58 95-137 (454)
349 PF08323 Glyco_transf_5: Starc 34.1 61 0.0013 29.2 4.3 27 25-53 17-43 (245)
350 PRK12342 hypothetical protein; 34.1 75 0.0016 28.8 4.8 30 119-148 109-144 (254)
351 COG0859 RfaF ADP-heptose:LPS h 33.9 1.1E+02 0.0023 29.1 6.1 100 13-149 175-279 (334)
352 PRK05784 phosphoribosylamine-- 33.9 3.5E+02 0.0076 27.3 9.9 34 14-52 1-34 (486)
353 PRK03359 putative electron tra 33.6 72 0.0016 29.0 4.6 30 119-148 112-147 (256)
354 PRK14478 nitrogenase molybdenu 33.6 3.3E+02 0.0071 27.4 9.7 24 119-145 393-416 (475)
355 PRK11269 glyoxylate carboligas 33.5 1.3E+02 0.0029 31.1 7.2 77 268-345 7-101 (591)
356 TIGR02329 propionate_PrpR prop 33.1 2.8E+02 0.0061 28.3 9.2 41 99-149 132-172 (526)
357 TIGR01918 various_sel_PB selen 33.1 81 0.0018 30.7 4.9 45 323-369 349-395 (431)
358 TIGR01917 gly_red_sel_B glycin 33.0 80 0.0017 30.8 4.9 28 119-146 76-113 (431)
359 PRK06731 flhF flagellar biosyn 33.0 3.8E+02 0.0082 24.6 9.2 42 12-55 74-115 (270)
360 cd02032 Bchl_like This family 32.9 68 0.0015 29.1 4.5 37 14-52 1-37 (267)
361 PRK04539 ppnK inorganic polyph 32.9 4.1E+02 0.0089 24.7 9.6 97 267-393 22-124 (296)
362 PF00070 Pyr_redox: Pyridine n 32.8 84 0.0018 22.3 4.1 24 29-54 10-33 (80)
363 PRK06112 acetolactate synthase 32.6 1.4E+02 0.0031 30.8 7.2 77 266-345 15-107 (578)
364 TIGR03845 sulfopyru_alph sulfo 32.2 2E+02 0.0044 23.8 6.7 25 322-346 63-92 (157)
365 cd01968 Nitrogenase_NifE_I Nit 31.8 3.9E+02 0.0084 26.2 9.8 25 119-146 356-380 (410)
366 cd02034 CooC The accessory pro 31.8 1E+02 0.0022 24.0 4.7 37 15-53 1-37 (116)
367 CHL00072 chlL photochlorophyll 31.7 83 0.0018 29.2 4.8 38 14-53 1-38 (290)
368 PF06825 HSBP1: Heat shock fac 31.7 83 0.0018 20.8 3.4 46 381-433 2-47 (54)
369 cd07025 Peptidase_S66 LD-Carbo 31.6 1.1E+02 0.0023 28.3 5.5 74 263-347 46-121 (282)
370 PRK10916 ADP-heptose:LPS hepto 31.5 1E+02 0.0022 29.3 5.6 104 13-148 180-288 (348)
371 COG2894 MinD Septum formation 31.0 90 0.0019 27.7 4.4 39 13-53 1-41 (272)
372 TIGR02699 archaeo_AfpA archaeo 30.9 47 0.001 28.2 2.7 42 16-59 2-44 (174)
373 PF03853 YjeF_N: YjeF-related 30.7 1E+02 0.0022 25.9 4.8 37 11-50 23-59 (169)
374 PRK09219 xanthine phosphoribos 30.6 1.1E+02 0.0024 26.3 5.1 29 119-147 50-80 (189)
375 COG0143 MetG Methionyl-tRNA sy 30.6 98 0.0021 31.7 5.4 41 13-55 4-54 (558)
376 PRK00881 purH bifunctional pho 30.6 1.6E+02 0.0036 29.6 6.8 53 14-78 5-59 (513)
377 PF00289 CPSase_L_chain: Carba 30.5 40 0.00088 26.1 2.1 69 266-336 12-90 (110)
378 PTZ00318 NADH dehydrogenase-li 30.3 65 0.0014 31.7 4.1 38 11-55 8-45 (424)
379 PF05225 HTH_psq: helix-turn-h 30.0 65 0.0014 20.3 2.6 25 379-407 1-25 (45)
380 PF00862 Sucrose_synth: Sucros 29.9 62 0.0013 32.3 3.7 114 23-147 295-431 (550)
381 PF08542 Rep_fac_C: Replicatio 29.9 1.8E+02 0.0038 21.1 5.5 48 378-435 3-50 (89)
382 cd00501 Peptidase_C15 Pyroglut 29.7 1.8E+02 0.0039 25.1 6.3 26 14-39 1-28 (194)
383 PRK07066 3-hydroxybutyryl-CoA 29.6 4.2E+02 0.0091 25.0 9.2 34 12-52 6-39 (321)
384 PLN02572 UDP-sulfoquinovose sy 29.5 1.1E+02 0.0023 30.5 5.5 41 4-50 38-78 (442)
385 PRK08979 acetolactate synthase 29.4 1.5E+02 0.0032 30.7 6.6 77 268-345 7-100 (572)
386 TIGR01283 nifE nitrogenase mol 29.2 4.8E+02 0.01 26.0 10.1 25 119-146 395-419 (456)
387 PRK07586 hypothetical protein; 29.2 98 0.0021 31.4 5.3 74 269-345 5-97 (514)
388 PRK01231 ppnK inorganic polyph 29.1 2.9E+02 0.0063 25.7 7.9 95 266-393 20-118 (295)
389 COG3349 Uncharacterized conser 29.1 57 0.0012 32.5 3.4 33 14-53 1-33 (485)
390 PRK06882 acetolactate synthase 29.0 1.1E+02 0.0023 31.7 5.6 77 268-345 7-100 (574)
391 cd05022 S-100A13 S-100A13: S-1 29.0 1.2E+02 0.0026 22.4 4.3 53 374-434 22-74 (89)
392 PRK06048 acetolactate synthase 28.9 1E+02 0.0022 31.7 5.4 75 268-345 11-103 (561)
393 KOG2825 Putative arsenite-tran 28.9 1.7E+02 0.0036 26.6 5.8 44 12-57 17-61 (323)
394 cd03114 ArgK-like The function 28.6 3.2E+02 0.007 22.2 10.3 36 16-53 2-37 (148)
395 TIGR01470 cysG_Nterm siroheme 28.6 3.9E+02 0.0086 23.2 12.1 149 244-414 9-164 (205)
396 COG3195 Uncharacterized protei 28.4 2.5E+02 0.0053 23.5 6.3 90 315-413 71-164 (176)
397 PRK05858 hypothetical protein; 28.2 1.8E+02 0.0039 29.8 7.0 75 269-345 9-100 (542)
398 TIGR01281 DPOR_bchL light-inde 28.2 95 0.0021 28.2 4.6 37 14-52 1-37 (268)
399 PRK13011 formyltetrahydrofolat 28.2 4.4E+02 0.0096 24.4 8.9 109 10-149 86-196 (286)
400 PRK04946 hypothetical protein; 28.1 21 0.00045 30.5 0.1 57 268-332 112-169 (181)
401 cd02040 NifH NifH gene encodes 28.0 99 0.0021 28.0 4.7 38 13-52 1-38 (270)
402 PRK07524 hypothetical protein; 27.9 1.5E+02 0.0033 30.2 6.4 74 269-345 6-97 (535)
403 TIGR02720 pyruv_oxi_spxB pyruv 27.7 1.2E+02 0.0026 31.3 5.6 27 319-345 64-96 (575)
404 PRK07282 acetolactate synthase 27.7 1.2E+02 0.0027 31.1 5.7 77 268-345 13-106 (566)
405 PLN02735 carbamoyl-phosphate s 27.6 5.7E+02 0.012 29.0 11.0 41 11-53 21-67 (1102)
406 PF14626 RNase_Zc3h12a_2: Zc3h 27.6 77 0.0017 24.8 3.1 33 27-61 9-41 (122)
407 PRK02155 ppnK NAD(+)/NADH kina 27.6 1.6E+02 0.0036 27.3 6.0 94 267-393 22-119 (291)
408 TIGR03877 thermo_KaiC_1 KaiC d 27.5 3.4E+02 0.0074 24.1 8.0 44 12-57 20-63 (237)
409 COG4081 Uncharacterized protei 27.4 1.1E+02 0.0025 24.2 4.0 43 15-59 5-48 (148)
410 PRK07064 hypothetical protein; 27.4 1.7E+02 0.0037 29.9 6.7 75 268-345 6-99 (544)
411 PRK06027 purU formyltetrahydro 26.9 4E+02 0.0087 24.6 8.4 108 10-149 86-196 (286)
412 PRK06965 acetolactate synthase 26.9 1.4E+02 0.003 31.0 5.9 75 268-345 24-117 (587)
413 TIGR01012 Sa_S2_E_A ribosomal 26.6 76 0.0016 27.5 3.3 32 119-150 108-141 (196)
414 PF09001 DUF1890: Domain of un 26.5 55 0.0012 26.3 2.2 36 24-61 10-45 (139)
415 PRK00784 cobyric acid synthase 26.4 6.6E+02 0.014 25.3 10.5 37 13-51 2-39 (488)
416 PRK13512 coenzyme A disulfide 26.2 68 0.0015 31.8 3.4 36 13-53 1-36 (438)
417 cd06320 PBP1_allose_binding Pe 26.1 2.6E+02 0.0056 25.1 7.1 28 119-146 57-88 (275)
418 COG2084 MmsB 3-hydroxyisobutyr 26.1 92 0.002 28.8 4.0 32 14-52 1-32 (286)
419 PRK07979 acetolactate synthase 26.0 1.3E+02 0.0028 31.0 5.6 78 268-345 7-100 (574)
420 TIGR00877 purD phosphoribosyla 25.8 3E+02 0.0066 26.9 8.0 34 14-54 1-34 (423)
421 COG0665 DadA Glycine/D-amino a 25.8 87 0.0019 30.1 4.1 36 11-53 2-37 (387)
422 PRK00885 phosphoribosylamine-- 25.7 3E+02 0.0065 27.0 7.9 29 14-49 1-30 (420)
423 PRK06466 acetolactate synthase 25.7 1.8E+02 0.004 30.0 6.6 74 269-345 8-100 (574)
424 PLN02172 flavin-containing mon 25.6 93 0.002 31.1 4.3 41 1-51 1-41 (461)
425 PRK08978 acetolactate synthase 25.6 1.7E+02 0.0036 30.0 6.3 26 320-345 65-96 (548)
426 PF01497 Peripla_BP_2: Peripla 25.5 89 0.0019 27.5 3.8 32 119-150 60-93 (238)
427 COG1348 NifH Nitrogenase subun 25.5 1.4E+02 0.0031 26.7 4.8 44 13-58 1-44 (278)
428 PLN02880 tyrosine decarboxylas 25.4 1.4E+02 0.0031 30.1 5.5 71 319-391 147-234 (490)
429 PLN02487 zeta-carotene desatur 25.4 1.6E+02 0.0034 30.4 5.9 36 10-52 72-107 (569)
430 PF02826 2-Hacid_dh_C: D-isome 25.3 1E+02 0.0022 26.1 4.0 107 244-389 36-143 (178)
431 COG2861 Uncharacterized protei 25.1 5.1E+02 0.011 23.3 9.8 39 98-145 137-178 (250)
432 PLN02285 methionyl-tRNA formyl 25.1 4E+02 0.0087 25.3 8.2 44 10-54 3-46 (334)
433 PRK06718 precorrin-2 dehydroge 25.1 1.1E+02 0.0023 26.7 4.0 34 12-52 9-42 (202)
434 PF10087 DUF2325: Uncharacteri 25.0 1.3E+02 0.0028 22.4 4.1 34 119-152 48-87 (97)
435 PRK07092 benzoylformate decarb 25.0 1.2E+02 0.0026 31.0 5.0 75 268-345 15-106 (530)
436 COG0059 IlvC Ketol-acid reduct 25.0 77 0.0017 29.5 3.1 51 12-73 17-69 (338)
437 cd01018 ZntC Metal binding pro 24.9 2.3E+02 0.0049 25.8 6.4 46 98-150 203-250 (266)
438 PF02374 ArsA_ATPase: Anion-tr 24.9 1.3E+02 0.0028 28.2 4.8 40 15-56 3-42 (305)
439 PLN02293 adenine phosphoribosy 24.7 1.8E+02 0.004 24.9 5.4 28 119-146 62-91 (187)
440 PRK06725 acetolactate synthase 24.7 1.4E+02 0.0031 30.7 5.6 27 319-345 78-110 (570)
441 COG2230 Cfa Cyclopropane fatty 24.7 66 0.0014 29.6 2.7 40 325-364 80-121 (283)
442 TIGR02114 coaB_strep phosphopa 24.6 67 0.0015 28.6 2.8 19 31-51 29-47 (227)
443 PRK05808 3-hydroxybutyryl-CoA 24.6 4.2E+02 0.0092 24.2 8.2 32 13-51 3-34 (282)
444 PRK08327 acetolactate synthase 24.4 1.5E+02 0.0032 30.6 5.6 79 267-346 9-109 (569)
445 PF00982 Glyco_transf_20: Glyc 24.3 3E+02 0.0066 27.6 7.5 99 312-435 368-474 (474)
446 cd01143 YvrC Periplasmic bindi 24.3 1.2E+02 0.0027 25.6 4.4 30 119-148 60-90 (195)
447 COG2159 Predicted metal-depend 24.1 1.7E+02 0.0037 27.2 5.5 68 263-334 141-210 (293)
448 TIGR01744 XPRTase xanthine pho 24.1 1.7E+02 0.0037 25.2 5.1 28 119-146 50-79 (191)
449 PF10093 DUF2331: Uncharacteri 24.0 6.7E+02 0.014 24.3 25.4 85 259-346 188-292 (374)
450 PRK04020 rps2P 30S ribosomal p 24.0 85 0.0018 27.4 3.1 33 119-151 114-148 (204)
451 PRK13230 nitrogenase reductase 24.0 1.4E+02 0.0029 27.4 4.8 39 13-53 1-39 (279)
452 TIGR01380 glut_syn glutathione 24.0 1.2E+02 0.0027 28.4 4.6 41 14-56 1-44 (312)
453 COG0205 PfkA 6-phosphofructoki 23.9 1.9E+02 0.004 27.7 5.6 117 12-146 1-124 (347)
454 TIGR01501 MthylAspMutase methy 23.9 1.4E+02 0.0029 24.2 4.1 40 13-54 1-40 (134)
455 PRK08125 bifunctional UDP-gluc 23.9 3.1E+02 0.0068 28.9 8.0 31 14-51 1-31 (660)
456 PF02780 Transketolase_C: Tran 23.8 1.3E+02 0.0028 23.6 4.0 37 12-52 8-44 (124)
457 PRK14476 nitrogenase molybdenu 23.8 2.3E+02 0.005 28.3 6.6 168 105-346 229-397 (455)
458 cd02065 B12-binding_like B12 b 23.8 1.1E+02 0.0025 23.6 3.8 35 16-52 2-36 (125)
459 cd02033 BchX Chlorophyllide re 23.7 2.3E+02 0.0049 26.9 6.2 42 12-55 30-71 (329)
460 PRK13604 luxD acyl transferase 23.7 1.6E+02 0.0034 27.6 5.1 37 12-50 35-71 (307)
461 PRK06756 flavodoxin; Provision 23.7 1.4E+02 0.0031 24.1 4.5 37 13-51 1-38 (148)
462 TIGR01504 glyox_carbo_lig glyo 23.6 6.2E+02 0.013 26.2 10.0 31 19-52 72-102 (588)
463 cd01147 HemV-2 Metal binding p 23.5 1E+02 0.0022 27.7 3.9 42 315-358 73-118 (262)
464 PRK07418 acetolactate synthase 23.5 2.9E+02 0.0063 28.8 7.6 79 266-345 20-118 (616)
465 PRK09177 xanthine-guanine phos 23.4 1.7E+02 0.0037 24.2 4.8 42 97-144 15-58 (156)
466 PF02056 Glyco_hydro_4: Family 23.4 4.7E+02 0.01 22.4 9.4 113 26-152 40-172 (183)
467 PF03720 UDPG_MGDP_dh_C: UDP-g 23.4 1E+02 0.0022 23.5 3.2 23 28-52 17-39 (106)
468 PLN02695 GDP-D-mannose-3',5'-e 23.3 1.8E+02 0.0039 28.0 5.7 37 9-51 17-53 (370)
469 COG2120 Uncharacterized protei 23.3 1.5E+02 0.0032 26.6 4.7 42 9-52 6-47 (237)
470 PRK07533 enoyl-(acyl carrier p 23.2 1.8E+02 0.0039 26.1 5.4 43 6-52 2-45 (258)
471 cd01017 AdcA Metal binding pro 23.2 4.8E+02 0.01 23.9 8.3 43 99-148 207-251 (282)
472 COG2210 Peroxiredoxin family p 23.2 1.8E+02 0.004 23.5 4.6 44 16-61 6-49 (137)
473 PF10686 DUF2493: Protein of u 23.2 2.5E+02 0.0053 19.7 4.8 29 119-147 31-64 (71)
474 PRK06067 flagellar accessory p 23.1 1.1E+02 0.0023 27.2 3.9 43 12-56 24-66 (234)
475 TIGR01915 npdG NADPH-dependent 23.1 95 0.0021 27.3 3.5 31 14-51 1-32 (219)
476 cd01976 Nitrogenase_MoFe_alpha 22.9 1E+02 0.0022 30.5 3.9 26 119-147 369-394 (421)
477 cd03818 GT1_ExpC_like This fam 22.9 2.9E+02 0.0064 26.6 7.2 74 265-345 10-116 (396)
478 PRK10037 cell division protein 22.9 1.4E+02 0.003 26.8 4.6 38 13-52 1-39 (250)
479 PRK14620 NAD(P)H-dependent gly 22.9 97 0.0021 29.2 3.7 32 14-52 1-32 (326)
480 cd01147 HemV-2 Metal binding p 22.8 1.2E+02 0.0026 27.2 4.2 30 119-148 74-106 (262)
481 PRK03372 ppnK inorganic polyph 22.8 1.6E+02 0.0036 27.5 5.0 55 314-393 70-128 (306)
482 TIGR03026 NDP-sugDHase nucleot 22.7 1.1E+02 0.0025 29.9 4.3 31 14-51 1-31 (411)
483 COG1893 ApbA Ketopantoate redu 22.6 86 0.0019 29.4 3.2 49 14-73 1-49 (307)
484 PF02635 DrsE: DsrE/DsrF-like 22.5 3E+02 0.0065 20.8 6.0 45 14-60 1-51 (122)
485 cd07062 Peptidase_S66_mccF_lik 22.5 1.4E+02 0.003 28.0 4.5 74 263-347 50-125 (308)
486 PF09334 tRNA-synt_1g: tRNA sy 22.4 75 0.0016 31.0 2.8 31 23-55 15-48 (391)
487 PRK11780 isoprenoid biosynthes 22.3 1.8E+02 0.004 25.6 5.1 38 14-53 2-43 (217)
488 TIGR01007 eps_fam capsular exo 22.3 2E+02 0.0044 24.7 5.4 38 13-52 17-55 (204)
489 TIGR00725 conserved hypothetic 22.3 3E+02 0.0065 22.8 6.1 77 267-345 42-122 (159)
490 TIGR00345 arsA arsenite-activa 22.3 3.3E+02 0.0072 25.0 7.0 24 31-56 3-26 (284)
491 TIGR03837 efp_adjacent_2 conse 22.2 1E+02 0.0022 29.5 3.5 86 259-347 186-291 (371)
492 cd01141 TroA_d Periplasmic bin 22.1 1.3E+02 0.0028 25.4 4.1 32 314-347 67-101 (186)
493 PRK01911 ppnK inorganic polyph 22.0 1.7E+02 0.0036 27.3 4.9 55 314-393 62-120 (292)
494 PRK05246 glutathione synthetas 22.0 1.4E+02 0.003 28.1 4.5 41 13-55 1-44 (316)
495 TIGR00745 apbA_panE 2-dehydrop 21.9 59 0.0013 29.9 2.0 34 32-71 5-38 (293)
496 PF13450 NAD_binding_8: NAD(P) 21.8 1.1E+02 0.0024 21.1 2.9 20 31-52 9-28 (68)
497 TIGR02853 spore_dpaA dipicolin 21.7 2.7E+02 0.0058 25.8 6.2 75 244-334 151-225 (287)
498 PF02558 ApbA: Ketopantoate re 21.6 51 0.0011 26.8 1.3 39 16-61 1-39 (151)
499 TIGR01917 gly_red_sel_B glycin 21.6 1.7E+02 0.0038 28.6 4.9 44 102-152 326-376 (431)
500 PF01380 SIS: SIS domain SIS d 21.6 1.4E+02 0.003 23.2 3.9 37 23-61 62-98 (131)
No 1
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5e-63 Score=485.59 Aligned_cols=413 Identities=69% Similarity=1.165 Sum_probs=334.4
Q ss_pred CCCCCcEEEEEcCCCccChHHHHHHHHHHHhCCC--CcEEEEEeccccccccCCCCCCCCeeEEecCCCCCCCCCCCCCH
Q 044218 9 KPTSLCHVLALPYPGRGHVNPMMNICKLLVSRQP--DILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPSEHGRANDF 86 (436)
Q Consensus 9 ~~~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~--Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~ 86 (436)
+..+..||+++|+|++||++|++.||++|+. + ||+|||++++.+...+++...+.+++|+.+|+++++......++
T Consensus 6 ~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~--~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~~~~~~~~~ 83 (459)
T PLN02448 6 SPTTSCHVVAMPYPGRGHINPMMNLCKLLAS--RKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPSELVRAADF 83 (459)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHc--CCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCCccccccCH
Confidence 3456789999999999999999999999999 8 99999999999887776643333799999998776544333455
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHHhhHHHHhc
Q 044218 87 AGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERN 166 (436)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~~ 166 (436)
..++..+.+.+...++++++.+. . ++||||+|.+++|+..+|+++|||++.++++++..++.+.+++.+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~-~-------~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~ 155 (459)
T PLN02448 84 PGFLEAVMTKMEAPFEQLLDRLE-P-------PVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQN 155 (459)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcC-C-------CcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhc
Confidence 56666666677888888888763 2 789999999999999999999999999999999888887776544322
Q ss_pred CCCCCCCCCCCCcccccCCCCCCCCCCCCCcccccCCchHHHHHHHhhcccccceEEEEcchhhhhHHHHHHHhhcCCCC
Q 044218 167 GHFPFDLSEKGDELVDCIPGLEPTKLADFPTIFHGAGRKILHAALQSASKVSKAQYLLLSSVYKLEAKTIDALKEEFSFP 246 (436)
Q Consensus 167 ~~~p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 246 (436)
+..|............++|++..+...+++.++.......++...........++++++||+++||+..++++++.++++
T Consensus 156 ~~~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~ 235 (459)
T PLN02448 156 GHFPVELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFP 235 (459)
T ss_pred cCCCCccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCc
Confidence 22222111000111235777776777788876654444445566666666677889999999999999999998756678
Q ss_pred eEEecCCCC---------------------CC--------------CCCcccChHHHHHHHHHHHhCCCeEEEEEcCCCC
Q 044218 247 VLLAQFCTS---------------------HW--------------EAFYSVSSAQMDEIIAGIRNSGVRYLWVTRGDTS 291 (436)
Q Consensus 247 ~~~vGpl~~---------------------~w--------------GS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~ 291 (436)
++.|||+.. .| ||+...+.+++.+++++|+.++++|||+++.+..
T Consensus 236 ~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~ 315 (459)
T PLN02448 236 VYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEAS 315 (459)
T ss_pred eEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCchh
Confidence 999999840 24 8887778899999999999999999998876544
Q ss_pred cccccccCCCcEEeeccchhhhccccCcceeeccCCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCC
Q 044218 292 RFKDGHADDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPE 371 (436)
Q Consensus 292 ~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~ 371 (436)
++.+. .++|+++++|+||.+||+|+++++|||||||||+.||+++|||||++|+++||+.||+++++.||+|+.+.. +
T Consensus 316 ~~~~~-~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~-~ 393 (459)
T PLN02448 316 RLKEI-CGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKR-E 393 (459)
T ss_pred hHhHh-ccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEec-c
Confidence 56555 457899999999999999999999999999999999999999999999999999999999988899999874 2
Q ss_pred ccccCccCHHHHHHHHHHHhccC--ccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044218 372 IASERLVTRDEITELVKRFMDLN--SDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDISR 435 (436)
Q Consensus 372 ~~~~~~~t~~~l~~~i~~ll~~~--~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 435 (436)
....+.+|+++|+++|+++|.++ +| ++||++|+++++++++|+.+||||+.++++|++.+++
T Consensus 394 ~~~~~~~~~~~l~~av~~vl~~~~~~~--~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 394 VGEETLVGREEIAELVKRFMDLESEEG--KEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred cccCCcCcHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 11124579999999999999763 45 8999999999999999999999999999999999875
No 2
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=7.2e-62 Score=472.29 Aligned_cols=402 Identities=26% Similarity=0.449 Sum_probs=321.0
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCCC-CCCCCCHHHHH
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPSE-HGRANDFAGFL 90 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~-~~~~~~~~~~~ 90 (436)
..+||+++|+|++||++|++.||+.|+. +|+.|||++++.+... ......+|++..+|+++|+. ... .....++
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~--~G~~VT~v~T~~n~~~--~~~~~~~i~~~~ip~glp~~~~~~-~~~~~~~ 80 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHL--KGFSITIAQTKFNYFS--PSDDFTDFQFVTIPESLPESDFKN-LGPIEFL 80 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHc--CCCEEEEEeCcccccc--cccCCCCeEEEeCCCCCCcccccc-cCHHHHH
Confidence 5679999999999999999999999999 9999999999976521 11111269999999988863 222 2344566
Q ss_pred HHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHHhhHHHHhcCC-C
Q 044218 91 EAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERNGH-F 169 (436)
Q Consensus 91 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~~~~-~ 169 (436)
..+.+.+...++++++.+.... .+ +++|||+|.+.+|+..+|+++|||++.++++++..++++.+++.+...+. .
T Consensus 81 ~~~~~~~~~~~~~~L~~l~~~~--~~--p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~ 156 (451)
T PLN02410 81 HKLNKECQVSFKDCLGQLVLQQ--GN--EIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLA 156 (451)
T ss_pred HHHHHHhHHHHHHHHHHHHhcc--CC--CcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCC
Confidence 6666677888888888764211 02 57999999999999999999999999999999999888777654433221 2
Q ss_pred CCCCCCCCCcccccCCCCCCCCCCCCCcccccCCchHHHHHHHhhcccccceEEEEcchhhhhHHHHHHHhhcCCCCeEE
Q 044218 170 PFDLSEKGDELVDCIPGLEPTKLADFPTIFHGAGRKILHAALQSASKVSKAQYLLLSSVYKLEAKTIDALKEEFSFPVLL 249 (436)
Q Consensus 170 p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 249 (436)
|..... ......+|+++++...+++................. .....++++++|||++||+..+++++...++++++
T Consensus 157 ~~~~~~--~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~ 233 (451)
T PLN02410 157 PLKEPK--GQQNELVPEFHPLRCKDFPVSHWASLESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQQQLQIPVYP 233 (451)
T ss_pred Cccccc--cCccccCCCCCCCChHHCcchhcCCcHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEE
Confidence 221110 011235777776777777764432222223333222 23467889999999999999999998756678999
Q ss_pred ecCCC----------------CCC--------------CCCcccChHHHHHHHHHHHhCCCeEEEEEcCC----------
Q 044218 250 AQFCT----------------SHW--------------EAFYSVSSAQMDEIIAGIRNSGVRYLWVTRGD---------- 289 (436)
Q Consensus 250 vGpl~----------------~~w--------------GS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~---------- 289 (436)
|||+. ..| ||+...+.+++.+++.+|+.++.+|||+++.+
T Consensus 234 vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~ 313 (451)
T PLN02410 234 IGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIES 313 (451)
T ss_pred ecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhc
Confidence 99994 013 99988899999999999999999999999832
Q ss_pred -CCcccccccCCCcEEeeccchhhhccccCcceeeccCCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEee
Q 044218 290 -TSRFKDGHADDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVK 368 (436)
Q Consensus 290 -~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~ 368 (436)
+++|.++ .++|+.+++|+||.+||+|+++++|||||||||+.||+++|||||++|+++||+.||+++++.||+|+.+.
T Consensus 314 lp~~f~er-~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~ 392 (451)
T PLN02410 314 LPKEFSKI-ISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE 392 (451)
T ss_pred CChhHHHh-ccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC
Confidence 2345555 67899999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred cCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044218 369 KPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDISR 435 (436)
Q Consensus 369 ~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 435 (436)
. . +++++|+++|+++|.+++| ++||++|+++++++++|+++||||+.++++|++.++.
T Consensus 393 ~-~------~~~~~v~~av~~lm~~~~~--~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 393 G-D------LDRGAVERAVKRLMVEEEG--EEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred C-c------ccHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 3 3 6999999999999987666 8999999999999999999999999999999999864
No 3
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=2.3e-61 Score=470.33 Aligned_cols=406 Identities=32% Similarity=0.532 Sum_probs=324.3
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCC-------C---CCCeeEEecCCCCCCCCC
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQS-------K---PHNIRFRTLPNTIPSEHG 81 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~-------~---~~~i~~~~l~~~l~~~~~ 81 (436)
..+||+++|+|++||++|++.||+.|+. +|..|||++++.+...+.+.. . ...++|..+|+++|+..+
T Consensus 6 ~~~HVv~~PfpaqGHi~Pml~lA~~La~--~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~ 83 (480)
T PLN02555 6 SLVHVMLVSFPGQGHVNPLLRLGKLLAS--KGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDP 83 (480)
T ss_pred CCCEEEEECCcccccHHHHHHHHHHHHh--CCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCcc
Confidence 4589999999999999999999999999 999999999998766544210 1 113677778888876433
Q ss_pred CCCCHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHHhhH
Q 044218 82 RANDFAGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFE 161 (436)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~ 161 (436)
...++..++..+...+.+.++++++.+.... . +++|||+|.+.+|+..+|+++|||.++++++++..++++.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~--pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~ 158 (480)
T PLN02555 84 RRQDLDLYLPQLELVGKREIPNLVKRYAEQG---R--PVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY 158 (480)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHHHhccC---C--CceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh
Confidence 3334555666666677888888888764321 1 3599999999999999999999999999999999988877763
Q ss_pred HHHhcCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccc--CCchHHHHHHHhhcccccceEEEEcchhhhhHHHHHHH
Q 044218 162 LLERNGHFPFDLSEKGDELVDCIPGLEPTKLADFPTIFHG--AGRKILHAALQSASKVSKAQYLLLSSVYKLEAKTIDAL 239 (436)
Q Consensus 162 ~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 239 (436)
. +..+..... .......+|+++.+...+++.++.. .....+..+.+.......++++++|||++||+..++++
T Consensus 159 ~----~~~~~~~~~-~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l 233 (480)
T PLN02555 159 H----GLVPFPTET-EPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYM 233 (480)
T ss_pred h----cCCCccccc-CCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHH
Confidence 1 111211110 0011234788877888888877642 22344555666666777889999999999999999998
Q ss_pred hhcCCCCeEEecCCC-----------------------------------CCCCCCcccChHHHHHHHHHHHhCCCeEEE
Q 044218 240 KEEFSFPVLLAQFCT-----------------------------------SHWEAFYSVSSAQMDEIIAGIRNSGVRYLW 284 (436)
Q Consensus 240 ~~~~~~~~~~vGpl~-----------------------------------~~wGS~~~~~~~~~~~l~~al~~~~~~~i~ 284 (436)
+. ..+ ++.|||+. .+|||+...+.+++.+++.+++..+++|||
T Consensus 234 ~~-~~~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW 311 (480)
T PLN02555 234 SK-LCP-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLW 311 (480)
T ss_pred hh-CCC-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEE
Confidence 76 334 99999983 012888888999999999999999999999
Q ss_pred EEcCC-----------CCcccccccCCCcEEeeccchhhhccccCcceeeccCCcchHHHHHhcCCcEeeccccccchhh
Q 044218 285 VTRGD-----------TSRFKDGHADDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPN 353 (436)
Q Consensus 285 ~~~~~-----------~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~n 353 (436)
+++.. ++++.+. .++|+++++|+||.+||.|+++++|||||||||+.||+++|||||++|+++||+.|
T Consensus 312 ~~~~~~~~~~~~~~~lp~~~~~~-~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~N 390 (480)
T PLN02555 312 VMRPPHKDSGVEPHVLPEEFLEK-AGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTD 390 (480)
T ss_pred EEecCcccccchhhcCChhhhhh-cCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHH
Confidence 98731 1234444 56799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 044218 354 SKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDI 433 (436)
Q Consensus 354 a~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 433 (436)
|+++++.||+|+.+.. .....+.++.++|.++|+++|.+++| +++|+||++|++++++|+++||||+.++++|++++
T Consensus 391 a~~~~~~~gvGv~l~~-~~~~~~~v~~~~v~~~v~~vm~~~~g--~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i 467 (480)
T PLN02555 391 AVYLVDVFKTGVRLCR-GEAENKLITREEVAECLLEATVGEKA--AELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKL 467 (480)
T ss_pred HHHHHHHhCceEEccC-CccccCcCcHHHHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 9999999999999953 11012458999999999999988777 89999999999999999999999999999999998
Q ss_pred Hh
Q 044218 434 SR 435 (436)
Q Consensus 434 ~~ 435 (436)
++
T Consensus 468 ~~ 469 (480)
T PLN02555 468 VR 469 (480)
T ss_pred Hh
Confidence 64
No 4
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=4.7e-61 Score=468.05 Aligned_cols=401 Identities=21% Similarity=0.377 Sum_probs=318.2
Q ss_pred CCCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCC-CCCeeEEecCCCCCCCCCCCCCHH
Q 044218 9 KPTSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSK-PHNIRFRTLPNTIPSEHGRANDFA 87 (436)
Q Consensus 9 ~~~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~-~~~i~~~~l~~~l~~~~~~~~~~~ 87 (436)
.+..+.||+++|+|++||++|++.||+.|+. +|++|||++++.+...+.+... ..+++++.+|++++... ..++.
T Consensus 2 ~~~~~~HVVlvPfPaqGHi~PmL~LAk~Las--~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~~~--~~~~~ 77 (448)
T PLN02562 2 KVTQRPKIILVPYPAQGHVTPMLKLASAFLS--RGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDDDP--PRDFF 77 (448)
T ss_pred CCCCCcEEEEEcCccccCHHHHHHHHHHHHh--CCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCCCc--cccHH
Confidence 4556689999999999999999999999999 9999999999988765543211 22699999998775321 22344
Q ss_pred HHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHHhhHHHHhcC
Q 044218 88 GFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERNG 167 (436)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~~~ 167 (436)
.+...+...+.+.+.++++++... . +++|||+|.+.+|+..+|+++|||++.++++++..++++.+++.+...+
T Consensus 78 ~l~~a~~~~~~~~l~~ll~~l~~~----~--pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~ 151 (448)
T PLN02562 78 SIENSMENTMPPQLERLLHKLDED----G--EVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTG 151 (448)
T ss_pred HHHHHHHHhchHHHHHHHHHhcCC----C--CcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcc
Confidence 444454446888899999887533 1 4699999999999999999999999999999998888877766543332
Q ss_pred CCCCCCCCCCCcccccCCCCCCCCCCCCCcccccC--CchHHHHHHHhhcccccceEEEEcchhhhhHHHHHHHhh----
Q 044218 168 HFPFDLSEKGDELVDCIPGLEPTKLADFPTIFHGA--GRKILHAALQSASKVSKAQYLLLSSVYKLEAKTIDALKE---- 241 (436)
Q Consensus 168 ~~p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---- 241 (436)
..+.............+|+++.+...+++.++... ....+..+.+.......++++++|||.+||+..++.+..
T Consensus 152 ~~~~~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~ 231 (448)
T PLN02562 152 LISETGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNN 231 (448)
T ss_pred ccccccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhcc
Confidence 22211000000112257777767778888766422 333456666666677788899999999999998887653
Q ss_pred cCCCCeEEecCCC--C-----------------C--------------CCCCc-ccChHHHHHHHHHHHhCCCeEEEEEc
Q 044218 242 EFSFPVLLAQFCT--S-----------------H--------------WEAFY-SVSSAQMDEIIAGIRNSGVRYLWVTR 287 (436)
Q Consensus 242 ~~~~~~~~vGpl~--~-----------------~--------------wGS~~-~~~~~~~~~l~~al~~~~~~~i~~~~ 287 (436)
...++++.|||+. . + |||+. ..+.+++.+++.+|+++|++|||+++
T Consensus 232 ~~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~ 311 (448)
T PLN02562 232 GQNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLN 311 (448)
T ss_pred ccCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEc
Confidence 1357899999994 0 1 28876 57889999999999999999999986
Q ss_pred CC-----CCcccccccCCCcEEeeccchhhhccccCcceeeccCCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhc
Q 044218 288 GD-----TSRFKDGHADDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWK 362 (436)
Q Consensus 288 ~~-----~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG 362 (436)
.. ++++.++ .++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.||
T Consensus 312 ~~~~~~l~~~~~~~-~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g 390 (448)
T PLN02562 312 PVWREGLPPGYVER-VSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWK 390 (448)
T ss_pred CCchhhCCHHHHHH-hccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhC
Confidence 42 2234444 57899999999999999999999999999999999999999999999999999999999997789
Q ss_pred eeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044218 363 TGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDIS 434 (436)
Q Consensus 363 ~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 434 (436)
+|+.+.. +++++|.++|+++|.+ ++||+||++++++++++ .+||||+.|+++|+++++
T Consensus 391 ~g~~~~~--------~~~~~l~~~v~~~l~~-----~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 391 IGVRISG--------FGQKEVEEGLRKVMED-----SGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred ceeEeCC--------CCHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 9988864 6999999999999987 89999999999999876 667999999999999875
No 5
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.3e-60 Score=461.24 Aligned_cols=392 Identities=30% Similarity=0.490 Sum_probs=317.4
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCC-CCCCCCCHHHHH
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPS-EHGRANDFAGFL 90 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~-~~~~~~~~~~~~ 90 (436)
+..||+++|+|++||++|++.||+.|+. +|+.|||++++.+...+... ...+|++..+|+++|+ ..+...++..++
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~--~G~~vT~v~t~~~~~~~~~~-~~~~i~~~~ipdglp~~~~~~~~~~~~~~ 80 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHS--KGFKTTHTLTTFIFNTIHLD-PSSPISIATISDGYDQGGFSSAGSVPEYL 80 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHc--CCCEEEEEECCchhhhcccC-CCCCEEEEEcCCCCCCcccccccCHHHHH
Confidence 3469999999999999999999999999 99999999999876655322 1226999999999886 323334566677
Q ss_pred HHHHHhchHHHHHHHHHhhcCCCCCCCCCe-eEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHHhhHHHHhcCCC
Q 044218 91 EAVFTKMEAPFEELLDRLLLDDDEQPAAAV-TAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERNGHF 169 (436)
Q Consensus 91 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~-D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (436)
..+...+.+.++++++.+.... +| +|||+|.+.+|+..+|+++|||++.++++++..+..+.+. .+ ...
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~------~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~-~~-~~~-- 150 (449)
T PLN02173 81 QNFKTFGSKTVADIIRKHQSTD------NPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS-YI-NNG-- 150 (449)
T ss_pred HHHHHhhhHHHHHHHHHhhccC------CCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH-Hh-ccC--
Confidence 7776688889999998864321 44 9999999999999999999999999999888776554432 11 110
Q ss_pred CCCCCCCCCcccccCCCCCCCCCCCCCccccc--CCchHHHHHHHhhcccccceEEEEcchhhhhHHHHHHHhhcCCCCe
Q 044218 170 PFDLSEKGDELVDCIPGLEPTKLADFPTIFHG--AGRKILHAALQSASKVSKAQYLLLSSVYKLEAKTIDALKEEFSFPV 247 (436)
Q Consensus 170 p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 247 (436)
.....+|+++.+...+++.++.. .....+..+.+.......++++++||++++|+..+++++. . +++
T Consensus 151 ---------~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~-~-~~v 219 (449)
T PLN02173 151 ---------SLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSK-V-CPV 219 (449)
T ss_pred ---------CccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHh-c-CCe
Confidence 01122567666777888876652 2223455555666667788999999999999999999876 3 479
Q ss_pred EEecCCCC----------------------------CC--------------CCCcccChHHHHHHHHHHHhCCCeEEEE
Q 044218 248 LLAQFCTS----------------------------HW--------------EAFYSVSSAQMDEIIAGIRNSGVRYLWV 285 (436)
Q Consensus 248 ~~vGpl~~----------------------------~w--------------GS~~~~~~~~~~~l~~al~~~~~~~i~~ 285 (436)
+.|||+.. .| ||+...+.+++.+++.+| .+.+|+|+
T Consensus 220 ~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWv 297 (449)
T PLN02173 220 LTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWV 297 (449)
T ss_pred eEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEE
Confidence 99999930 13 888888999999999999 77889999
Q ss_pred EcCC-----CCccccccc-CCCcEEeeccchhhhccccCcceeeccCCcchHHHHHhcCCcEeeccccccchhhHHHHhh
Q 044218 286 TRGD-----TSRFKDGHA-DDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQ 359 (436)
Q Consensus 286 ~~~~-----~~~~~~~~~-~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~ 359 (436)
++.+ ++++.+. . ++|+++++|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.||+++++
T Consensus 298 vr~~~~~~lp~~~~~~-~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~ 376 (449)
T PLN02173 298 VRASEESKLPPGFLET-VDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQD 376 (449)
T ss_pred EeccchhcccchHHHh-hcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHH
Confidence 9742 1234333 3 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred hhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044218 360 DWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDIS 434 (436)
Q Consensus 360 ~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 434 (436)
.||+|+.+.. +. .++.++.++|+++|+++|.+++| +++|++|+++++++++|+++||||+.++++|+++++
T Consensus 377 ~~g~Gv~v~~-~~-~~~~~~~e~v~~av~~vm~~~~~--~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 377 VWKVGVRVKA-EK-ESGIAKREEIEFSIKEVMEGEKS--KEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred HhCceEEEee-cc-cCCcccHHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 9999999975 21 12357999999999999988777 899999999999999999999999999999999875
No 6
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.6e-60 Score=464.76 Aligned_cols=400 Identities=26% Similarity=0.483 Sum_probs=316.4
Q ss_pred CCCCcEEEEEcCCCccChHHHHHHHHH--HHhCCCCcEEEEEeccccccccCCCCC-CCCeeEEecCCCCCCCCCCCCCH
Q 044218 10 PTSLCHVLALPYPGRGHVNPMMNICKL--LVSRQPDILITFVVTEEWLGFIGSQSK-PHNIRFRTLPNTIPSEHGRANDF 86 (436)
Q Consensus 10 ~~~~~~vl~~~~~~~GH~~p~l~la~~--L~~~~~Gh~Vt~~~~~~~~~~~~~~~~-~~~i~~~~l~~~l~~~~~~~~~~ 86 (436)
.....||+++|+|++||++|++.||++ |++ +|++|||++++.+.+.++.... ...+++..+|+++|+... .+.
T Consensus 5 ~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~--~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~--~~~ 80 (456)
T PLN02210 5 EGQETHVLMVTLAFQGHINPMLKLAKHLSLSS--KNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPKDDP--RAP 80 (456)
T ss_pred CCCCCEEEEeCCcccccHHHHHHHHHHHHhhc--CCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCCCcc--cCH
Confidence 445689999999999999999999999 558 9999999999988776644322 235788888888876432 244
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHHhhHHHHhc
Q 044218 87 AGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERN 166 (436)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~~ 166 (436)
..++..+.+.+.+.++++++.. +|||||+|.+.+|+..+|+++|||.+.++++++..++++.++... .
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~~----------~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~--~ 148 (456)
T PLN02210 81 ETLLKSLNKVGAKNLSKIIEEK----------RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK--T 148 (456)
T ss_pred HHHHHHHHHhhhHHHHHHHhcC----------CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc--c
Confidence 4556656556666777777654 899999999999999999999999999999999888877765321 1
Q ss_pred CCCCCCCCCCCCcccccCCCCCCCCCCCCCcccccCCchHHHHHH-HhhcccccceEEEEcchhhhhHHHHHHHhhcCCC
Q 044218 167 GHFPFDLSEKGDELVDCIPGLEPTKLADFPTIFHGAGRKILHAAL-QSASKVSKAQYLLLSSVYKLEAKTIDALKEEFSF 245 (436)
Q Consensus 167 ~~~p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 245 (436)
...+. ... ......+|+++.+...+++.++.......+.... +.......++++++|++.++|++.++++++ . +
T Consensus 149 ~~~~~--~~~-~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~-~ 223 (456)
T PLN02210 149 NSFPD--LED-LNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD-L-K 223 (456)
T ss_pred CCCCc--ccc-cCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-c-C
Confidence 11111 000 0112346777667777888766533333233333 332345667899999999999999999887 3 5
Q ss_pred CeEEecCCCC---------------------------CC--------------CCCcccChHHHHHHHHHHHhCCCeEEE
Q 044218 246 PVLLAQFCTS---------------------------HW--------------EAFYSVSSAQMDEIIAGIRNSGVRYLW 284 (436)
Q Consensus 246 ~~~~vGpl~~---------------------------~w--------------GS~~~~~~~~~~~l~~al~~~~~~~i~ 284 (436)
++++|||+.. +| ||+...+.+++.+++.+|+.++++|||
T Consensus 224 ~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw 303 (456)
T PLN02210 224 PVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLW 303 (456)
T ss_pred CEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEE
Confidence 7999999941 14 888878899999999999999999999
Q ss_pred EEcCCC-----Cccccccc-CCCcEEeeccchhhhccccCcceeeccCCcchHHHHHhcCCcEeeccccccchhhHHHHh
Q 044218 285 VTRGDT-----SRFKDGHA-DDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIV 358 (436)
Q Consensus 285 ~~~~~~-----~~~~~~~~-~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~ 358 (436)
+++... ..+.+. . ++++.|++|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.||++++
T Consensus 304 ~~~~~~~~~~~~~~~~~-~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~ 382 (456)
T PLN02210 304 VIRPKEKAQNVQVLQEM-VKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLV 382 (456)
T ss_pred EEeCCccccchhhHHhh-ccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHH
Confidence 997531 223333 3 377888999999999999999999999999999999999999999999999999999999
Q ss_pred hhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044218 359 QDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDISR 435 (436)
Q Consensus 359 ~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 435 (436)
+.||+|+.+...+ ..+.+++++|+++|+++|.+++| ++||+||++|++.+++|+++||||+.++++|++.++-
T Consensus 383 ~~~g~G~~l~~~~--~~~~~~~~~l~~av~~~m~~~~g--~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~~ 455 (456)
T PLN02210 383 DVFGIGVRMRNDA--VDGELKVEEVERCIEAVTEGPAA--ADIRRRAAELKHVARLALAPGGSSARNLDLFISDITI 455 (456)
T ss_pred HHhCeEEEEeccc--cCCcCCHHHHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 8679999997511 12468999999999999988766 8899999999999999999999999999999999864
No 7
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=7.8e-60 Score=458.35 Aligned_cols=400 Identities=21% Similarity=0.326 Sum_probs=311.7
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHH-hCCCCcEEEEEeccccccccCCCCC-CCCeeEEecCC----CCCCCCCCCCC
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLV-SRQPDILITFVVTEEWLGFIGSQSK-PHNIRFRTLPN----TIPSEHGRAND 85 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~-~~~~Gh~Vt~~~~~~~~~~~~~~~~-~~~i~~~~l~~----~l~~~~~~~~~ 85 (436)
+++||+++|+|++||++|++.||+.|+ . +|++|||++++.+...+.+... ..++++..+|. ++++.. .+
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~--~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~---~~ 78 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSAN--HGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPS---AH 78 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhC--CCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCC---cc
Confidence 568999999999999999999999998 7 8999999999987655422211 12689999884 443111 12
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHHhhHHHHh
Q 044218 86 FAGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLER 165 (436)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~ 165 (436)
....+..+...+.+.++++++++. . +|+|||+|.+.+|+..+|+++|||++.++++++..++++.+++.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~------~--~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~ 150 (481)
T PLN02992 79 VVTKIGVIMREAVPTLRSKIAEMH------Q--KPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDK 150 (481)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcC------C--CCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcc
Confidence 222333344556677788877652 1 78999999999999999999999999999999988877776654322
Q ss_pred cCCCCCCCCCCCCcccccCCCCCCCCCCCCCcccccCCchHHHHHHHhhcccccceEEEEcchhhhhHHHHHHHhhc---
Q 044218 166 NGHFPFDLSEKGDELVDCIPGLEPTKLADFPTIFHGAGRKILHAALQSASKVSKAQYLLLSSVYKLEAKTIDALKEE--- 242 (436)
Q Consensus 166 ~~~~p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--- 242 (436)
....+.. .......+|+++.++..+++..+.......+..+.+.......++++++||+.+||+..+++++..
T Consensus 151 ~~~~~~~----~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~ 226 (481)
T PLN02992 151 DIKEEHT----VQRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLL 226 (481)
T ss_pred ccccccc----cCCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhcccc
Confidence 1111100 001123578887777788886554333344555556566677889999999999999999998652
Q ss_pred ---CCCCeEEecCCC--------------------------CCCCCCcccChHHHHHHHHHHHhCCCeEEEEEcCCC---
Q 044218 243 ---FSFPVLLAQFCT--------------------------SHWEAFYSVSSAQMDEIIAGIRNSGVRYLWVTRGDT--- 290 (436)
Q Consensus 243 ---~~~~~~~vGpl~--------------------------~~wGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~--- 290 (436)
..++++.|||+. .+|||+...+.+++.+++.+|+.++++|||+++...
T Consensus 227 ~~~~~~~v~~VGPl~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~ 306 (481)
T PLN02992 227 GRVARVPVYPIGPLCRPIQSSKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGS 306 (481)
T ss_pred ccccCCceEEecCccCCcCCCcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence 135799999995 124999889999999999999999999999996311
Q ss_pred --------------CcccccccCC---------CcEEeeccchhhhccccCcceeeccCCcchHHHHHhcCCcEeecccc
Q 044218 291 --------------SRFKDGHADD---------RGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLF 347 (436)
Q Consensus 291 --------------~~~~~~~~~~---------~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~ 347 (436)
++..+. +|+ ++.+.+|+||.+||+|+++++|||||||||+.||+++|||||++|++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~-lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~ 385 (481)
T PLN02992 307 ACSAYFSANGGETRDNTPEY-LPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLF 385 (481)
T ss_pred cccccccCcccccccchhhh-CCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCcc
Confidence 001111 233 36667999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHh--cCCChHHH
Q 044218 348 WDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAA--ENGSSITN 425 (436)
Q Consensus 348 ~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~--~~g~~~~~ 425 (436)
+||+.||+++++.||+|+.++. .. +.++.++|.++|+++|.+++| ++||++++++++++++|++ +||||+.+
T Consensus 386 ~DQ~~na~~~~~~~g~gv~~~~-~~---~~~~~~~l~~av~~vm~~~~g--~~~r~~a~~~~~~a~~Av~~~~GGSS~~~ 459 (481)
T PLN02992 386 AEQNMNAALLSDELGIAVRSDD-PK---EVISRSKIEALVRKVMVEEEG--EEMRRKVKKLRDTAEMSLSIDGGGVAHES 459 (481)
T ss_pred chhHHHHHHHHHHhCeeEEecC-CC---CcccHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 9999999999767799999975 21 358999999999999988777 8999999999999999994 69999999
Q ss_pred HHHHHHHHHh
Q 044218 426 LDAFLKDISR 435 (436)
Q Consensus 426 ~~~~~~~~~~ 435 (436)
+++|++++++
T Consensus 460 l~~~v~~~~~ 469 (481)
T PLN02992 460 LCRVTKECQR 469 (481)
T ss_pred HHHHHHHHHH
Confidence 9999999865
No 8
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.2e-59 Score=455.42 Aligned_cols=404 Identities=25% Similarity=0.416 Sum_probs=310.9
Q ss_pred CCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCC-CCCeeEEecC----CCCCCCCCCCC
Q 044218 10 PTSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSK-PHNIRFRTLP----NTIPSEHGRAN 84 (436)
Q Consensus 10 ~~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~-~~~i~~~~l~----~~l~~~~~~~~ 84 (436)
...++||+++|+|++||++|++.||+.|+. +|+.|||++++.+...+++... ..++++..+| +++|+..+...
T Consensus 6 ~~~~~HVvl~PfpaqGHi~P~l~LAk~La~--~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~ 83 (477)
T PLN02863 6 KPAGTHVLVFPFPAQGHMIPLLDLTHRLAL--RGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVK 83 (477)
T ss_pred cCCCCEEEEecCcccchHHHHHHHHHHHHh--CCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChh
Confidence 456799999999999999999999999999 9999999999988876654321 2257877654 24444333222
Q ss_pred C----HHHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHHhh
Q 044218 85 D----FAGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHF 160 (436)
Q Consensus 85 ~----~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~ 160 (436)
+ ....+......+.+.+.+++.... . +++|||+|.+.+|+..+|+++|||++.++++++..++++.++
T Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~~------~--~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~ 155 (477)
T PLN02863 84 DLPPSGFPLMIHALGELYAPLLSWFRSHP------S--PPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSL 155 (477)
T ss_pred hcchhhHHHHHHHHHHhHHHHHHHHHhCC------C--CCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHH
Confidence 2 222344444556666666666531 1 689999999999999999999999999999999999888876
Q ss_pred HHHHhcCCCCCCC-CCCCCc--ccccCCCCCCCCCCCCCccccc--CCchHHHHHHHhhcccccceEEEEcchhhhhHHH
Q 044218 161 ELLERNGHFPFDL-SEKGDE--LVDCIPGLEPTKLADFPTIFHG--AGRKILHAALQSASKVSKAQYLLLSSVYKLEAKT 235 (436)
Q Consensus 161 ~~~~~~~~~p~~~-~~~~~~--~~~~~p~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (436)
... .+... ...... ....+|++..++..+++.++.. ..........+.......++++++||++++|+..
T Consensus 156 ~~~-----~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~ 230 (477)
T PLN02863 156 WRE-----MPTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIY 230 (477)
T ss_pred hhc-----ccccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHH
Confidence 421 11100 000001 1234788777888888876642 2223344444444445567889999999999999
Q ss_pred HHHHhhcCC-CCeEEecCCC--C---------------------CC--------------CCCcccChHHHHHHHHHHHh
Q 044218 236 IDALKEEFS-FPVLLAQFCT--S---------------------HW--------------EAFYSVSSAQMDEIIAGIRN 277 (436)
Q Consensus 236 ~~~~~~~~~-~~~~~vGpl~--~---------------------~w--------------GS~~~~~~~~~~~l~~al~~ 277 (436)
+++++..+. ++++.|||+. . .| ||+...+.+++.+++.+|++
T Consensus 231 ~~~~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~ 310 (477)
T PLN02863 231 LEHLKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEK 310 (477)
T ss_pred HHHHHhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHh
Confidence 999987554 6899999994 0 13 88888888999999999999
Q ss_pred CCCeEEEEEcCCC----------CcccccccCCCcEEeeccchhhhccccCcceeeccCCcchHHHHHhcCCcEeecccc
Q 044218 278 SGVRYLWVTRGDT----------SRFKDGHADDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLF 347 (436)
Q Consensus 278 ~~~~~i~~~~~~~----------~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~ 347 (436)
++++|||+++... .++.++..+.++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 311 ~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~ 390 (477)
T PLN02863 311 SGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMA 390 (477)
T ss_pred CCCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCcc
Confidence 9999999997432 122222012356667999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 044218 348 WDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLD 427 (436)
Q Consensus 348 ~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~ 427 (436)
+||+.||+++++.||+|+.+.. .. .+.++.++|.++|+++|.+ + ++||+||+++++.+++|+++||||+.+++
T Consensus 391 ~DQ~~na~~v~~~~gvG~~~~~-~~--~~~~~~~~v~~~v~~~m~~--~--~~~r~~a~~l~e~a~~Av~~gGSS~~~l~ 463 (477)
T PLN02863 391 ADQFVNASLLVDELKVAVRVCE-GA--DTVPDSDELARVFMESVSE--N--QVERERAKELRRAALDAIKERGSSVKDLD 463 (477)
T ss_pred ccchhhHHHHHHhhceeEEecc-CC--CCCcCHHHHHHHHHHHhhc--c--HHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 9999999999888899999964 11 2446999999999999842 2 89999999999999999999999999999
Q ss_pred HHHHHHHh
Q 044218 428 AFLKDISR 435 (436)
Q Consensus 428 ~~~~~~~~ 435 (436)
+|++.+++
T Consensus 464 ~~v~~i~~ 471 (477)
T PLN02863 464 GFVKHVVE 471 (477)
T ss_pred HHHHHHHH
Confidence 99999864
No 9
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=5.5e-59 Score=450.72 Aligned_cols=392 Identities=26% Similarity=0.466 Sum_probs=311.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccc-ccc-cCCCCCCCCeeEEecCCCCCCCCC-CCCCHHHH
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEW-LGF-IGSQSKPHNIRFRTLPNTIPSEHG-RANDFAGF 89 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~-~~~-~~~~~~~~~i~~~~l~~~l~~~~~-~~~~~~~~ 89 (436)
+.||+++|+|++||++|++.||+.|+.. +|+.|||++++.+ ... ........+++|..+++++++... ...+...+
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~-~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~g~~~~~~~~~~~ 81 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKT-TGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNR 81 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhC-CCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCCccccccccHHHH
Confidence 4699999999999999999999999940 5999999999854 221 111111126999999988876432 23456666
Q ss_pred HHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHHhhHHHHhcCCC
Q 044218 90 LEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERNGHF 169 (436)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (436)
+......+.+.++++++++.... . +++|||+|.+.+|+..+|+++|||.+.++++++..++++.++... .
T Consensus 82 ~~~~~~~~~~~l~~~l~~l~~~~---~--pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~----~- 151 (455)
T PLN02152 82 LVNFERNGDKALSDFIEANLNGD---S--PVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG----N- 151 (455)
T ss_pred HHHHHHhccHHHHHHHHHhhccC---C--CceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc----C-
Confidence 77777788899999998864321 1 569999999999999999999999999999999988887665421 0
Q ss_pred CCCCCCCCCcccccCCCCCCCCCCCCCcccccC--CchHHHHHHHhhcccc--cceEEEEcchhhhhHHHHHHHhhcCCC
Q 044218 170 PFDLSEKGDELVDCIPGLEPTKLADFPTIFHGA--GRKILHAALQSASKVS--KAQYLLLSSVYKLEAKTIDALKEEFSF 245 (436)
Q Consensus 170 p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~ 245 (436)
+ ....+|+++.+...++|.++... .......+.+...... .++++++|||++||+..+++++. .
T Consensus 152 ~---------~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---~ 219 (455)
T PLN02152 152 N---------SVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---I 219 (455)
T ss_pred C---------CeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---C
Confidence 0 11247777767788888876421 2223344434444332 24689999999999999999865 2
Q ss_pred CeEEecCCCC-----------------------CC--------------CCCcccChHHHHHHHHHHHhCCCeEEEEEcC
Q 044218 246 PVLLAQFCTS-----------------------HW--------------EAFYSVSSAQMDEIIAGIRNSGVRYLWVTRG 288 (436)
Q Consensus 246 ~~~~vGpl~~-----------------------~w--------------GS~~~~~~~~~~~l~~al~~~~~~~i~~~~~ 288 (436)
+++.|||+.. +| ||+...+.+++.+++.+|+.++.+|||+++.
T Consensus 220 ~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~ 299 (455)
T PLN02152 220 EMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITD 299 (455)
T ss_pred CEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEec
Confidence 6999999930 02 9988899999999999999999999999975
Q ss_pred C-----------------CCcccccccCCCcEEeeccchhhhccccCcceeeccCCcchHHHHHhcCCcEeeccccccch
Q 044218 289 D-----------------TSRFKDGHADDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQV 351 (436)
Q Consensus 289 ~-----------------~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~ 351 (436)
. .+++.++ .++|+.|++|+||.+||+|+++++|||||||||++|++++|||||++|+++||+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~f~e~-~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~ 378 (455)
T PLN02152 300 KLNREAKIEGEEETEIEKIAGFRHE-LEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQP 378 (455)
T ss_pred CcccccccccccccccccchhHHHh-ccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccch
Confidence 2 1233334 568899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 044218 352 PNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLK 431 (436)
Q Consensus 352 ~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~ 431 (436)
.||+++++.||+|+.+.. +. .+.+|+++|+++|+++|++ ++ .+||+||+++++++++++++||||+.++++|++
T Consensus 379 ~na~~~~~~~~~G~~~~~-~~--~~~~~~e~l~~av~~vm~~-~~--~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~ 452 (455)
T PLN02152 379 ANAKLLEEIWKTGVRVRE-NS--EGLVERGEIRRCLEAVMEE-KS--VELRESAEKWKRLAIEAGGEGGSSDKNVEAFVK 452 (455)
T ss_pred HHHHHHHHHhCceEEeec-Cc--CCcCcHHHHHHHHHHHHhh-hH--HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 999999998888888864 21 2347999999999999975 33 679999999999999999999999999999999
Q ss_pred HHH
Q 044218 432 DIS 434 (436)
Q Consensus 432 ~~~ 434 (436)
+++
T Consensus 453 ~i~ 455 (455)
T PLN02152 453 TLC 455 (455)
T ss_pred HhC
Confidence 873
No 10
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.1e-58 Score=449.51 Aligned_cols=406 Identities=23% Similarity=0.408 Sum_probs=310.3
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCC--cEEEEEecccccc-c----cCCC-CCCCCeeEEecCCCCC-CCCCC
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPD--ILITFVVTEEWLG-F----IGSQ-SKPHNIRFRTLPNTIP-SEHGR 82 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~G--h~Vt~~~~~~~~~-~----~~~~-~~~~~i~~~~l~~~l~-~~~~~ 82 (436)
++.||+++|+|++||++|++.||+.|+. +| ..|||++++.+.. . +... ....+++|..+|+... .....
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~--~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 79 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIE--QDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGG 79 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHh--CCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCcccc
Confidence 4579999999999999999999999999 88 9999999987652 1 2211 1112699999995432 11011
Q ss_pred CCCHHHHHHHHHHhchH----HHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHH
Q 044218 83 ANDFAGFLEAVFTKMEA----PFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFH 158 (436)
Q Consensus 83 ~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~ 158 (436)
..+...++..+.+.+.+ .+.++++...... + +++|||+|.+.+|+..+|+++|||.+.++++++..++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~--pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~ 154 (468)
T PLN02207 80 TQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDG---V--KVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQ 154 (468)
T ss_pred ccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCC---C--CeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 23444455445555644 3444444332111 1 3599999999999999999999999999999998888877
Q ss_pred hhHHHHhcCC-CCCCCCCCCCcccccCCCC-CCCCCCCCCcccccCCchHHHHHHHhhcccccceEEEEcchhhhhHHHH
Q 044218 159 HFELLERNGH-FPFDLSEKGDELVDCIPGL-EPTKLADFPTIFHGAGRKILHAALQSASKVSKAQYLLLSSVYKLEAKTI 236 (436)
Q Consensus 159 ~~~~~~~~~~-~p~~~~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (436)
+++....... .+. .. ......+|++ +.+...+++.++..... +..+.+......+++++++|+++++|++.+
T Consensus 155 ~~~~~~~~~~~~~~--~~--~~~~~~vPgl~~~l~~~dlp~~~~~~~~--~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~ 228 (468)
T PLN02207 155 YLADRHSKDTSVFV--RN--SEEMLSIPGFVNPVPANVLPSALFVEDG--YDAYVKLAILFTKANGILVNSSFDIEPYSV 228 (468)
T ss_pred HhhhccccccccCc--CC--CCCeEECCCCCCCCChHHCcchhcCCcc--HHHHHHHHHhcccCCEEEEEchHHHhHHHH
Confidence 7653321100 000 00 0122357887 56888888876642221 344445555677889999999999999999
Q ss_pred HHHhh-cCCCCeEEecCCC-------C-----------CC--------------CCCcccChHHHHHHHHHHHhCCCeEE
Q 044218 237 DALKE-EFSFPVLLAQFCT-------S-----------HW--------------EAFYSVSSAQMDEIIAGIRNSGVRYL 283 (436)
Q Consensus 237 ~~~~~-~~~~~~~~vGpl~-------~-----------~w--------------GS~~~~~~~~~~~l~~al~~~~~~~i 283 (436)
++++. ...++++.|||+. . +| ||....+.+++.+++.+|+.++++||
T Consensus 229 ~~~~~~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~fl 308 (468)
T PLN02207 229 NHFLDEQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFL 308 (468)
T ss_pred HHHHhccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEE
Confidence 98865 2457899999995 1 12 99888899999999999999999999
Q ss_pred EEEcCCC--------CcccccccCCCcEEeeccchhhhccccCcceeeccCCcchHHHHHhcCCcEeeccccccchhhHH
Q 044218 284 WVTRGDT--------SRFKDGHADDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSK 355 (436)
Q Consensus 284 ~~~~~~~--------~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 355 (436)
|+++... ++|.++ .++|+.+++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+
T Consensus 309 W~~r~~~~~~~~~lp~~f~er-~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~ 387 (468)
T PLN02207 309 WSLRTEEVTNDDLLPEGFLDR-VSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAF 387 (468)
T ss_pred EEEeCCCccccccCCHHHHhh-cCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHH
Confidence 9998521 344444 5788999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhceeeEeecCCc-cccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044218 356 QIVQDWKTGWRVKKPEI-ASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDIS 434 (436)
Q Consensus 356 ~~~~~lG~G~~~~~~~~-~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 434 (436)
++++.||+|+.+..... ...+.++.++|+++|+++|.+ ++ ++||+||+++++++++|+++||||+.++++|+++++
T Consensus 388 ~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~--~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~ 464 (468)
T PLN02207 388 LMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DN--NVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVI 464 (468)
T ss_pred HHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-ch--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 99987899998853100 011346999999999999973 34 899999999999999999999999999999999885
No 11
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.2e-58 Score=456.13 Aligned_cols=407 Identities=26% Similarity=0.443 Sum_probs=307.1
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCC--cEEEEEecccccccc-------CCCCC--CCCeeEEecCCCCCCCC
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPD--ILITFVVTEEWLGFI-------GSQSK--PHNIRFRTLPNTIPSEH 80 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~G--h~Vt~~~~~~~~~~~-------~~~~~--~~~i~~~~l~~~l~~~~ 80 (436)
.++||+++|+|++||++|++.||+.|+. +| ..|||++++.+.... .+... ..+|++..+|++.+...
T Consensus 1 ~~~hvvl~P~paqGHi~P~l~LAk~La~--~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~ 78 (481)
T PLN02554 1 MKIELVFIPSPGIGHLRPTVELAKLLVD--SDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTT 78 (481)
T ss_pred CceEEEEeCCcchhhHHHHHHHHHHHHh--CCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcc
Confidence 3789999999999999999999999999 98 899999998775421 11111 22699999997654221
Q ss_pred CCCCCHHHHHHHHHHhchHHHHHHHHHhhcCCC-C-CCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHH
Q 044218 81 GRANDFAGFLEAVFTKMEAPFEELLDRLLLDDD-E-QPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFH 158 (436)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~-~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~ 158 (436)
. ...+..+ ...+.+.+++.++++..... . .+ +++|||+|.+++|+..+|+++|||++.++++++..++++.
T Consensus 79 ~-~~~~~~~----~~~~~~~~~~~l~~l~~~~~~~~~~--pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~ 151 (481)
T PLN02554 79 E-DPTFQSY----IDNQKPKVRDAVAKLVDDSSTPSSP--RLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQL 151 (481)
T ss_pred c-chHHHHH----HHHHHHHHHHHHHHHHhhhccCCCC--CeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHH
Confidence 1 1122222 23444445554444421100 0 01 3489999999999999999999999999999999999988
Q ss_pred hhHHHHhcCCCCCCCCCCCCcccccCCCC-CCCCCCCCCcccccCCchHHHHHHHhhcccccceEEEEcchhhhhHHHHH
Q 044218 159 HFELLERNGHFPFDLSEKGDELVDCIPGL-EPTKLADFPTIFHGAGRKILHAALQSASKVSKAQYLLLSSVYKLEAKTID 237 (436)
Q Consensus 159 ~~~~~~~~~~~p~~~~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (436)
+++........+..... .......+|++ .+++..+++..+.. +..+..+.+.......++++++|++.++|+...+
T Consensus 152 ~~~~~~~~~~~~~~~~~-~~~~~v~iPgl~~pl~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~ 228 (481)
T PLN02554 152 HVQMLYDEKKYDVSELE-DSEVELDVPSLTRPYPVKCLPSVLLS--KEWLPLFLAQARRFREMKGILVNTVAELEPQALK 228 (481)
T ss_pred hhhhhccccccCccccC-CCCceeECCCCCCCCCHHHCCCcccC--HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHH
Confidence 87654322111111000 01112247776 35777778765542 2344555566666778999999999999999999
Q ss_pred HHhhc--CCCCeEEecCCC-------------------------------CCCCCCcccChHHHHHHHHHHHhCCCeEEE
Q 044218 238 ALKEE--FSFPVLLAQFCT-------------------------------SHWEAFYSVSSAQMDEIIAGIRNSGVRYLW 284 (436)
Q Consensus 238 ~~~~~--~~~~~~~vGpl~-------------------------------~~wGS~~~~~~~~~~~l~~al~~~~~~~i~ 284 (436)
++... ..++++.|||+. .+|||+...+..++.+++.+|++++++|||
T Consensus 229 ~l~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW 308 (481)
T PLN02554 229 FFSGSSGDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLW 308 (481)
T ss_pred HHHhcccCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 88752 336899999992 124998888899999999999999999999
Q ss_pred EEcCC-------------------CCcccccccCCCcEEeeccchhhhccccCcceeeccCCcchHHHHHhcCCcEeecc
Q 044218 285 VTRGD-------------------TSRFKDGHADDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFP 345 (436)
Q Consensus 285 ~~~~~-------------------~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P 345 (436)
+++.. ++++.++ .++|+++++|+||.+||.|+++++|||||||||++||+++|||||++|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r-~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P 387 (481)
T PLN02554 309 SLRRASPNIMKEPPGEFTNLEEILPEGFLDR-TKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWP 387 (481)
T ss_pred EEcCCcccccccccccccchhhhCChHHHHH-hccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecC
Confidence 99752 1223333 467899999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHhhhhceeeEeecCCc-----cccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCC
Q 044218 346 LFWDQVPNSKQIVQDWKTGWRVKKPEI-----ASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENG 420 (436)
Q Consensus 346 ~~~DQ~~na~~~~~~lG~G~~~~~~~~-----~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g 420 (436)
+++||+.||+++.+.||+|+.++.... ...+.+++++|+++|+++|.++ ++||+||+++++++++|+++||
T Consensus 388 ~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~----~~~r~~a~~l~~~~~~av~~gG 463 (481)
T PLN02554 388 LYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD----SDVRKRVKEMSEKCHVALMDGG 463 (481)
T ss_pred ccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999765557799999874100 0124589999999999999732 8999999999999999999999
Q ss_pred ChHHHHHHHHHHHHh
Q 044218 421 SSITNLDAFLKDISR 435 (436)
Q Consensus 421 ~~~~~~~~~~~~~~~ 435 (436)
||+.++++|++++++
T Consensus 464 ss~~~l~~lv~~~~~ 478 (481)
T PLN02554 464 SSHTALKKFIQDVTK 478 (481)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999999875
No 12
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=2.2e-58 Score=445.52 Aligned_cols=403 Identities=21% Similarity=0.328 Sum_probs=310.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCC-CcEEEEEecccccccc------CCCCCCCCeeEEecCCCCCCCC-CCCC
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQP-DILITFVVTEEWLGFI------GSQSKPHNIRFRTLPNTIPSEH-GRAN 84 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~-Gh~Vt~~~~~~~~~~~------~~~~~~~~i~~~~l~~~l~~~~-~~~~ 84 (436)
.+||+++|+|++||++|++.||+.|+. + |..|||++++.....+ +......+|++..+|....+.. ....
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~--~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~ 80 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSS--VLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDA 80 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHh--CCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCc
Confidence 569999999999999999999999997 6 9999999887655432 1110112599999984332111 1111
Q ss_pred CHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCC-eEEEcchhHHHHHHHHhhHHH
Q 044218 85 DFAGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIP-VASLWTMSALVFSVFHHFELL 163 (436)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP-~v~~~~~~~~~~~~~~~~~~~ 163 (436)
+....+..+.+.+.+.++++++++. . +++|||+|.+++|+..+|+++||| .+.++++++..+.++.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~l~------~--~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~ 152 (470)
T PLN03015 81 TIFTKMVVKMRAMKPAVRDAVKSMK------R--KPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVL 152 (470)
T ss_pred cHHHHHHHHHHhchHHHHHHHHhcC------C--CCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhh
Confidence 3443445555678888999988763 1 689999999999999999999999 588888888877777776543
Q ss_pred HhcCCCCCCCCCCCCcccccCCCCCCCCCCCCCcccccCCchHHHHHHHhhcccccceEEEEcchhhhhHHHHHHHhhcC
Q 044218 164 ERNGHFPFDLSEKGDELVDCIPGLEPTKLADFPTIFHGAGRKILHAALQSASKVSKAQYLLLSSVYKLEAKTIDALKEEF 243 (436)
Q Consensus 164 ~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 243 (436)
... .+..... .. ....+|+++.+...+++..+.+.....+....+.......++++++|||++||+..+++++..+
T Consensus 153 ~~~--~~~~~~~-~~-~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~ 228 (470)
T PLN03015 153 DTV--VEGEYVD-IK-EPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDM 228 (470)
T ss_pred hcc--cccccCC-CC-CeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhc
Confidence 221 1100000 01 1235788888888888876643333334444555556788999999999999999999997631
Q ss_pred ------CCCeEEecCCC--------------------------CCCCCCcccChHHHHHHHHHHHhCCCeEEEEEcCCC-
Q 044218 244 ------SFPVLLAQFCT--------------------------SHWEAFYSVSSAQMDEIIAGIRNSGVRYLWVTRGDT- 290 (436)
Q Consensus 244 ------~~~~~~vGpl~--------------------------~~wGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~- 290 (436)
.++++.|||+. .+|||+...+.+++.+++.+|+.++++|||+++...
T Consensus 229 ~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~ 308 (470)
T PLN03015 229 ELNRVMKVPVYPIGPIVRTNVHVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPAS 308 (470)
T ss_pred ccccccCCceEEecCCCCCcccccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCcc
Confidence 25799999995 124999989999999999999999999999997321
Q ss_pred -----------------CcccccccCCCc-EEeeccchhhhccccCcceeeccCCcchHHHHHhcCCcEeeccccccchh
Q 044218 291 -----------------SRFKDGHADDRG-IVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVP 352 (436)
Q Consensus 291 -----------------~~~~~~~~~~~~-~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~ 352 (436)
+++.++ ..+++ .+.+|+||.+||+|+++++|||||||||+.|++++|||||++|+++||+.
T Consensus 309 ~~~~~~~~~~~~~~~lp~~f~er-~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~ 387 (470)
T PLN03015 309 YLGASSSDDDQVSASLPEGFLDR-TRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWM 387 (470)
T ss_pred ccccccccccchhhcCChHHHHh-hccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHH
Confidence 112222 22333 45699999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc--CccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 044218 353 NSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL--NSDERKEMSKRAREVQEICREAAAENGSSITNLDAFL 430 (436)
Q Consensus 353 na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~--~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~ 430 (436)
||+++++.||+|+.+.. .. ..+.++.++|+++|+++|.+ ++| +++|+||+++++++++|+++||||++++++|+
T Consensus 388 na~~~~~~~gvg~~~~~-~~-~~~~v~~e~i~~~v~~lm~~~~eeg--~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~ 463 (470)
T PLN03015 388 NATLLTEEIGVAVRTSE-LP-SEKVIGREEVASLVRKIVAEEDEEG--QKIRAKAEEVRVSSERAWSHGGSSYNSLFEWA 463 (470)
T ss_pred HHHHHHHHhCeeEEecc-cc-cCCccCHHHHHHHHHHHHccCcccH--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 99999888899999962 11 12468999999999999963 456 89999999999999999999999999999999
Q ss_pred HHHH
Q 044218 431 KDIS 434 (436)
Q Consensus 431 ~~~~ 434 (436)
++++
T Consensus 464 ~~~~ 467 (470)
T PLN03015 464 KRCY 467 (470)
T ss_pred Hhcc
Confidence 8864
No 13
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.2e-58 Score=451.79 Aligned_cols=407 Identities=26% Similarity=0.443 Sum_probs=308.8
Q ss_pred CCCCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCC---C--CCCeeEEecC-----CCCC
Q 044218 8 VKPTSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQS---K--PHNIRFRTLP-----NTIP 77 (436)
Q Consensus 8 ~~~~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~---~--~~~i~~~~l~-----~~l~ 77 (436)
.++.++.||+++|+|++||++|++.||+.|+. +|+.|||++++.+...+.... . ...|+|+.+| +++|
T Consensus 3 ~~~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~--~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp 80 (491)
T PLN02534 3 VSKAKQLHFVLIPLMAQGHMIPMIDMARLLAE--RGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLP 80 (491)
T ss_pred cccCCCCEEEEECCCCcchHHHHHHHHHHHHh--CCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCC
Confidence 34456689999999999999999999999999 999999999998766544321 1 1148999998 5787
Q ss_pred CCCCCCCC-----HHHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHH
Q 044218 78 SEHGRAND-----FAGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSAL 152 (436)
Q Consensus 78 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~ 152 (436)
+..+...+ +...+......+.+.+.++++.. . . ++||||+|.+.+|+..+|+++|||.+.++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~--~----~--pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~ 152 (491)
T PLN02534 81 IGCENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA--K----P--PPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCF 152 (491)
T ss_pred CCccccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc--C----C--CCcEEEECCccHHHHHHHHHhCCCeEEEecchHH
Confidence 64332222 22223333445667777777653 1 2 6899999999999999999999999999999988
Q ss_pred HHHHHHhhHHHHhcCCCCCCCCCCCCcccccCCCCCC---CCCCCCCcccccCCchHHHHHHHhhc-ccccceEEEEcch
Q 044218 153 VFSVFHHFELLERNGHFPFDLSEKGDELVDCIPGLEP---TKLADFPTIFHGAGRKILHAALQSAS-KVSKAQYLLLSSV 228 (436)
Q Consensus 153 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 228 (436)
.+.++.++..... ..+... ......+|+++. +...+++.++... ..+..+..... ....++++++|||
T Consensus 153 ~~~~~~~~~~~~~--~~~~~~----~~~~~~iPg~p~~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~a~~vlvNTf 224 (491)
T PLN02534 153 SLLSSHNIRLHNA--HLSVSS----DSEPFVVPGMPQSIEITRAQLPGAFVSL--PDLDDVRNKMREAESTAFGVVVNSF 224 (491)
T ss_pred HHHHHHHHHHhcc--cccCCC----CCceeecCCCCccccccHHHCChhhcCc--ccHHHHHHHHHhhcccCCEEEEecH
Confidence 8776544422111 111110 111233566542 5666676654321 11223333333 2345678999999
Q ss_pred hhhhHHHHHHHhhcCCCCeEEecCCCC-----------------------CC--------------CCCcccChHHHHHH
Q 044218 229 YKLEAKTIDALKEEFSFPVLLAQFCTS-----------------------HW--------------EAFYSVSSAQMDEI 271 (436)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~vGpl~~-----------------------~w--------------GS~~~~~~~~~~~l 271 (436)
.+||+..+++++...+++++.|||+.. .| ||+...+.+++.++
T Consensus 225 ~eLE~~~l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~ 304 (491)
T PLN02534 225 NELEHGCAEAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIEL 304 (491)
T ss_pred HHhhHHHHHHHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHH
Confidence 999999999998756678999999930 13 99988899999999
Q ss_pred HHHHHhCCCeEEEEEcCC-----------CCccccccc-CCCcEEeeccchhhhccccCcceeeccCCcchHHHHHhcCC
Q 044218 272 IAGIRNSGVRYLWVTRGD-----------TSRFKDGHA-DDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGV 339 (436)
Q Consensus 272 ~~al~~~~~~~i~~~~~~-----------~~~~~~~~~-~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~Gv 339 (436)
+.+|+.++.+|||+++.+ +++|.+. . +.++++.+|+||.+||+|+++++|||||||||++||+++||
T Consensus 305 a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~-~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~Gv 383 (491)
T PLN02534 305 GLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEER-IKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGV 383 (491)
T ss_pred HHHHHhCCCCEEEEEecCccccchhhhcCchhhHHh-hccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCC
Confidence 999999999999999842 1233333 2 34666679999999999999999999999999999999999
Q ss_pred cEeeccccccchhhHHHHhhhhceeeEeecCC------ccccC-ccCHHHHHHHHHHHhc--cCccchHHHHHHHHHHHH
Q 044218 340 PMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPE------IASER-LVTRDEITELVKRFMD--LNSDERKEMSKRAREVQE 410 (436)
Q Consensus 340 P~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~------~~~~~-~~t~~~l~~~i~~ll~--~~~~~~~~~~~~a~~l~~ 410 (436)
|||++|++.||+.||+++++.||+|+.+..+. ..+.+ .+++++|.++|+++|. +++| +++|+||++|++
T Consensus 384 P~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg--~~~R~rA~elk~ 461 (491)
T PLN02534 384 PMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEG--ERRRRRAQELGV 461 (491)
T ss_pred CEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccH--HHHHHHHHHHHH
Confidence 99999999999999999999999999885311 00111 4899999999999997 4556 899999999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHh
Q 044218 411 ICREAAAENGSSITNLDAFLKDISR 435 (436)
Q Consensus 411 ~~~~a~~~~g~~~~~~~~~~~~~~~ 435 (436)
++++|+.+||||+.++++|++++++
T Consensus 462 ~a~~Av~~GGSS~~nl~~fv~~i~~ 486 (491)
T PLN02534 462 MARKAMELGGSSHINLSILIQDVLK 486 (491)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999864
No 14
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=2.1e-58 Score=452.65 Aligned_cols=404 Identities=25% Similarity=0.408 Sum_probs=311.5
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCC----cEEEEEecccccc----ccCCC----C-CCCCeeEEecCCCCCC
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPD----ILITFVVTEEWLG----FIGSQ----S-KPHNIRFRTLPNTIPS 78 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~G----h~Vt~~~~~~~~~----~~~~~----~-~~~~i~~~~l~~~l~~ 78 (436)
.+.||+++|+|++||++|++.||+.|+. +| +.|||++++.+.. .+... . ...+|++..+|++.++
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~--~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p 79 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLA--SSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPP 79 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHh--CCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCC
Confidence 3579999999999999999999999999 86 8999999876532 12211 0 1115999999965422
Q ss_pred CCCCCCCHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHH
Q 044218 79 EHGRANDFAGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFH 158 (436)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~ 158 (436)
.. ..+...++..+.+.+.+.++++++.+. . +++|||+|.+.+|+..+|+++|||++.++++++..++++.
T Consensus 80 ~~--~e~~~~~~~~~~~~~~~~l~~~L~~l~------~--pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~ 149 (480)
T PLN00164 80 TD--AAGVEEFISRYIQLHAPHVRAAIAGLS------C--PVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALML 149 (480)
T ss_pred Cc--cccHHHHHHHHHHhhhHHHHHHHHhcC------C--CceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHh
Confidence 11 113345555566678888888887761 1 5699999999999999999999999999999999998888
Q ss_pred hhHHHHhcCCCCCCCCCCCCcccccCCCCCCCCCCCCCcccccCCchHHHHHHHhhcccccceEEEEcchhhhhHHHHHH
Q 044218 159 HFELLERNGHFPFDLSEKGDELVDCIPGLEPTKLADFPTIFHGAGRKILHAALQSASKVSKAQYLLLSSVYKLEAKTIDA 238 (436)
Q Consensus 159 ~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (436)
+++........+... .. ....+|+++.++..++|.++.......+..+.........++++++||++++|+..+++
T Consensus 150 ~~~~~~~~~~~~~~~---~~-~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 225 (480)
T PLN00164 150 RLPALDEEVAVEFEE---ME-GAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAA 225 (480)
T ss_pred hhhhhcccccCcccc---cC-cceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHH
Confidence 775432111101100 00 11237888778888888766533333344444445556778999999999999999999
Q ss_pred HhhcC------CCCeEEecCCC-----------------------------CCCCCCcccChHHHHHHHHHHHhCCCeEE
Q 044218 239 LKEEF------SFPVLLAQFCT-----------------------------SHWEAFYSVSSAQMDEIIAGIRNSGVRYL 283 (436)
Q Consensus 239 ~~~~~------~~~~~~vGpl~-----------------------------~~wGS~~~~~~~~~~~l~~al~~~~~~~i 283 (436)
++... .++++.|||+. .+|||+...+.+++.+++.+|+.++++||
T Consensus 226 ~~~~~~~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~fl 305 (480)
T PLN00164 226 IADGRCTPGRPAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFL 305 (480)
T ss_pred HHhccccccCCCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEE
Confidence 97631 25799999995 02389888889999999999999999999
Q ss_pred EEEcCCC-----------------CcccccccCCCcEE-eeccchhhhccccCcceeeccCCcchHHHHHhcCCcEeecc
Q 044218 284 WVTRGDT-----------------SRFKDGHADDRGIV-VPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFP 345 (436)
Q Consensus 284 ~~~~~~~-----------------~~~~~~~~~~~~~v-~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P 345 (436)
|+++... +++.++ ..++..+ .+|+||.+||+|+++++|||||||||++|++++|||||++|
T Consensus 306 Wv~~~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P 384 (480)
T PLN00164 306 WVLRGPPAAGSRHPTDADLDELLPEGFLER-TKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWP 384 (480)
T ss_pred EEEcCCcccccccccccchhhhCChHHHHH-hcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCC
Confidence 9998531 011111 2233344 49999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccC--ccchHHHHHHHHHHHHHHHHHHhcCCChH
Q 044218 346 LFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLN--SDERKEMSKRAREVQEICREAAAENGSSI 423 (436)
Q Consensus 346 ~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~--~~~~~~~~~~a~~l~~~~~~a~~~~g~~~ 423 (436)
+++||+.||+++++.||+|+.+.. +..+.+.+++++|.++|+++|.++ +| +.+|++|+++++++++|+++||||+
T Consensus 385 ~~~DQ~~Na~~~~~~~gvG~~~~~-~~~~~~~~~~e~l~~av~~vm~~~~~~~--~~~r~~a~~~~~~~~~a~~~gGSS~ 461 (480)
T PLN00164 385 LYAEQHLNAFELVADMGVAVAMKV-DRKRDNFVEAAELERAVRSLMGGGEEEG--RKAREKAAEMKAACRKAVEEGGSSY 461 (480)
T ss_pred ccccchhHHHHHHHHhCeEEEecc-ccccCCcCcHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 999999999999878899999864 211123579999999999999764 35 8999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 044218 424 TNLDAFLKDISR 435 (436)
Q Consensus 424 ~~~~~~~~~~~~ 435 (436)
+++++|++++++
T Consensus 462 ~~l~~~v~~~~~ 473 (480)
T PLN00164 462 AALQRLAREIRH 473 (480)
T ss_pred HHHHHHHHHHHh
Confidence 999999999965
No 15
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=9e-58 Score=443.60 Aligned_cols=405 Identities=22% Similarity=0.378 Sum_probs=308.2
Q ss_pred CCCCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCC--CCCeeEEecC----CCCCCCCC
Q 044218 8 VKPTSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSK--PHNIRFRTLP----NTIPSEHG 81 (436)
Q Consensus 8 ~~~~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~--~~~i~~~~l~----~~l~~~~~ 81 (436)
|+++.+.||+++|+|++||++|++.||+.|+. +|+.|||++++.+...+.+... +.+++++.+| +++|+..+
T Consensus 1 ~~~~~~~HVvl~P~paqGHi~P~l~LAk~La~--~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~ 78 (472)
T PLN02670 1 MKREEVLHVAMFPWLAMGHLIPFLRLSKLLAQ--KGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAE 78 (472)
T ss_pred CCCCCCcEEEEeCChhhhHHHHHHHHHHHHHh--CCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCcc
Confidence 35667789999999999999999999999999 9999999999988766553211 2368999998 67775433
Q ss_pred CCCCH----HHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHH
Q 044218 82 RANDF----AGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVF 157 (436)
Q Consensus 82 ~~~~~----~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~ 157 (436)
...++ ..++....+.+.+.++++++.+ +++|||+|.+.+|+..+|+++|||++.++++++..++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~ 148 (472)
T PLN02670 79 SSTDVPYTKQQLLKKAFDLLEPPLTTFLETS----------KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFI 148 (472)
T ss_pred cccccchhhHHHHHHHHHHhHHHHHHHHHhC----------CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHH
Confidence 32332 2345556667788888888775 789999999999999999999999999999999888876
Q ss_pred HhhHHHHhcCCCCCCCCCCCCcccccCCCCC--CCCCCCCCcccccC--CchHHHHHHHhhcccccceEEEEcchhhhhH
Q 044218 158 HHFELLERNGHFPFDLSEKGDELVDCIPGLE--PTKLADFPTIFHGA--GRKILHAALQSASKVSKAQYLLLSSVYKLEA 233 (436)
Q Consensus 158 ~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~--~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 233 (436)
.+.......+..+... +.....+.++|... .+...+++.++... .........+......+++++++|||++||+
T Consensus 149 ~~~~~~~~~~~~~~~~-~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~ 227 (472)
T PLN02670 149 GPPSSLMEGGDLRSTA-EDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEP 227 (472)
T ss_pred hhhHhhhhcccCCCcc-ccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhH
Confidence 6554332222221110 00000111223221 13345666655321 1122333334444566788999999999999
Q ss_pred HHHHHHhhcCCCCeEEecCCCC--------------------CC--------------CCCcccChHHHHHHHHHHHhCC
Q 044218 234 KTIDALKEEFSFPVLLAQFCTS--------------------HW--------------EAFYSVSSAQMDEIIAGIRNSG 279 (436)
Q Consensus 234 ~~~~~~~~~~~~~~~~vGpl~~--------------------~w--------------GS~~~~~~~~~~~l~~al~~~~ 279 (436)
..+++++....++++.|||+.. +| ||+...+.+++.+++.+|+.++
T Consensus 228 ~~l~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~ 307 (472)
T PLN02670 228 EWFDLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSE 307 (472)
T ss_pred HHHHHHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCC
Confidence 9999998745578999999940 13 9998899999999999999999
Q ss_pred CeEEEEEcCCC-----------CcccccccCCCcEE-eeccchhhhccccCcceeeccCCcchHHHHHhcCCcEeecccc
Q 044218 280 VRYLWVTRGDT-----------SRFKDGHADDRGIV-VPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLF 347 (436)
Q Consensus 280 ~~~i~~~~~~~-----------~~~~~~~~~~~~~v-~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~ 347 (436)
++|||+++... ++|.++ ..+++.+ .+|+||.+||+|+++++|||||||||++|++++|||||++|++
T Consensus 308 ~~FlWv~r~~~~~~~~~~~~lp~~f~~~-~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~ 386 (472)
T PLN02670 308 TPFFWVLRNEPGTTQNALEMLPDGFEER-VKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVL 386 (472)
T ss_pred CCEEEEEcCCcccccchhhcCChHHHHh-ccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcch
Confidence 99999998531 122222 2333444 5999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 044218 348 WDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLD 427 (436)
Q Consensus 348 ~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~ 427 (436)
+||+.||+++++ ||+|+.++..+ ..+.++.++|+++|+++|.+++| ++||+||+++++++++ .+.....++
T Consensus 387 ~DQ~~Na~~v~~-~g~Gv~l~~~~--~~~~~~~e~i~~av~~vm~~~~g--~~~r~~a~~l~~~~~~----~~~~~~~~~ 457 (472)
T PLN02670 387 NEQGLNTRLLHG-KKLGLEVPRDE--RDGSFTSDSVAESVRLAMVDDAG--EEIRDKAKEMRNLFGD----MDRNNRYVD 457 (472)
T ss_pred hccHHHHHHHHH-cCeeEEeeccc--cCCcCcHHHHHHHHHHHhcCcch--HHHHHHHHHHHHHHhC----cchhHHHHH
Confidence 999999999985 59999997522 12458999999999999988766 7999999999999996 688888999
Q ss_pred HHHHHHHh
Q 044218 428 AFLKDISR 435 (436)
Q Consensus 428 ~~~~~~~~ 435 (436)
.|++.|++
T Consensus 458 ~~~~~l~~ 465 (472)
T PLN02670 458 ELVHYLRE 465 (472)
T ss_pred HHHHHHHH
Confidence 99988864
No 16
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.4e-57 Score=449.21 Aligned_cols=403 Identities=22% Similarity=0.372 Sum_probs=295.2
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCC------C---CCeeEEecC---CCCCC
Q 044218 11 TSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSK------P---HNIRFRTLP---NTIPS 78 (436)
Q Consensus 11 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~------~---~~i~~~~l~---~~l~~ 78 (436)
.+++||+++|+|++||++|++.||++|+. +|++|||++++.+...+++... + -.+...++| +++|+
T Consensus 3 ~~~~hVvlvp~pa~GHi~P~L~LAk~L~~--rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~ 80 (482)
T PLN03007 3 HEKLHILFFPFMAHGHMIPTLDMAKLFSS--RGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPE 80 (482)
T ss_pred CCCcEEEEECCCccccHHHHHHHHHHHHh--CCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCC
Confidence 45689999999999999999999999999 9999999999988866654321 1 134455555 45664
Q ss_pred CCCCCC--------CHHHHHHHHH---HhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEc
Q 044218 79 EHGRAN--------DFAGFLEAVF---TKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLW 147 (436)
Q Consensus 79 ~~~~~~--------~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~ 147 (436)
..+... ....+...+. ..+...++++++.. ++||||+|.+++|+..+|+++|||+++++
T Consensus 81 g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~----------~~~~IV~D~~~~w~~~vA~~lgIP~v~f~ 150 (482)
T PLN03007 81 GCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETT----------RPDCLVADMFFPWATEAAEKFGVPRLVFH 150 (482)
T ss_pred CcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC----------CCCEEEECCcchhHHHHHHHhCCCeEEee
Confidence 322211 1222333322 33333444444322 89999999999999999999999999999
Q ss_pred chhHHHHHHHHhhHHHHhcCCCCCCCCCCCCcccccCCCCC---CCCCCCCCcccccCCchHHHHHHHhhcccccceEEE
Q 044218 148 TMSALVFSVFHHFELLERNGHFPFDLSEKGDELVDCIPGLE---PTKLADFPTIFHGAGRKILHAALQSASKVSKAQYLL 224 (436)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (436)
+++++.+.+..++.... +...... ......+|+++ .+...+++.. ...................+++++
T Consensus 151 ~~~a~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~pg~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl 222 (482)
T PLN03007 151 GTGYFSLCASYCIRVHK-----PQKKVAS-SSEPFVIPDLPGDIVITEEQINDA--DEESPMGKFMKEVRESEVKSFGVL 222 (482)
T ss_pred cccHHHHHHHHHHHhcc-----cccccCC-CCceeeCCCCCCccccCHHhcCCC--CCchhHHHHHHHHHhhcccCCEEE
Confidence 99888776655443211 1100000 00011244443 1222333321 112223334444445567788999
Q ss_pred EcchhhhhHHHHHHHhhcCCCCeEEecCCC-------------------------------------CCCCCCcccChHH
Q 044218 225 LSSVYKLEAKTIDALKEEFSFPVLLAQFCT-------------------------------------SHWEAFYSVSSAQ 267 (436)
Q Consensus 225 ~~~~~~l~~~~~~~~~~~~~~~~~~vGpl~-------------------------------------~~wGS~~~~~~~~ 267 (436)
+|+++++|++..+++++....++++|||+. .+|||+...+..+
T Consensus 223 ~Nt~~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~ 302 (482)
T PLN03007 223 VNSFYELESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQ 302 (482)
T ss_pred EECHHHHHHHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHH
Confidence 999999999989998875556899999962 1239998888899
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCC----------CcccccccCCCcEEeeccchhhhccccCcceeeccCCcchHHHHHhc
Q 044218 268 MDEIIAGIRNSGVRYLWVTRGDT----------SRFKDGHADDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYA 337 (436)
Q Consensus 268 ~~~l~~al~~~~~~~i~~~~~~~----------~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~ 337 (436)
+.+++.+|+.++++|||+++... +++.++..+.|+++.+|+||.+||+|+++++|||||||||++||+++
T Consensus 303 ~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~ 382 (482)
T PLN03007 303 LFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAA 382 (482)
T ss_pred HHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHc
Confidence 99999999999999999998531 12222201457788899999999999999999999999999999999
Q ss_pred CCcEeeccccccchhhHHHHhhhhceeeEeecCCc--cccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHH
Q 044218 338 GVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEI--ASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREA 415 (436)
Q Consensus 338 GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~--~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a 415 (436)
|||||++|+++||+.||+++++.|++|+.+..... .+...+++++|+++|+++|.+++| ++||++|+++++.+++|
T Consensus 383 GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~--~~~r~~a~~~~~~a~~a 460 (482)
T PLN03007 383 GLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEA--EERRLRAKKLAEMAKAA 460 (482)
T ss_pred CCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHH--HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887788877642000 012458999999999999988666 79999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHh
Q 044218 416 AAENGSSITNLDAFLKDISR 435 (436)
Q Consensus 416 ~~~~g~~~~~~~~~~~~~~~ 435 (436)
+.+||||+.++++|++++++
T Consensus 461 ~~~gGsS~~~l~~~v~~~~~ 480 (482)
T PLN03007 461 VEEGGSSFNDLNKFMEELNS 480 (482)
T ss_pred HhCCCcHHHHHHHHHHHHHh
Confidence 99999999999999999865
No 17
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=3e-57 Score=438.91 Aligned_cols=386 Identities=19% Similarity=0.327 Sum_probs=292.5
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCC-CCCeeEEec--C--CCCCCCCCCCCC
Q 044218 11 TSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSK-PHNIRFRTL--P--NTIPSEHGRAND 85 (436)
Q Consensus 11 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~-~~~i~~~~l--~--~~l~~~~~~~~~ 85 (436)
+.++||+++|+|++||++|++.||+.|++ +||+|||++++.+...+.+.+. +.++++..+ | +++|+..+...+
T Consensus 2 ~~~~hvv~~P~paqGHi~P~l~LAk~La~--~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~ 79 (442)
T PLN02208 2 EPKFHAFMFPWFAFGHMIPFLHLANKLAE--KGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSD 79 (442)
T ss_pred CCCCEEEEecCccccHHHHHHHHHHHHHh--CCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccc
Confidence 45689999999999999999999999999 9999999999988877765433 235666654 3 466654332222
Q ss_pred H----HHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHHhhH
Q 044218 86 F----AGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFE 161 (436)
Q Consensus 86 ~----~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~ 161 (436)
+ ..++....+.+.+.++++++.+ ++||||+| ++.|+..+|+.+|||++.++++++..++ +.+++
T Consensus 80 l~~~l~~~~~~~~~~~~~~l~~~L~~~----------~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~ 147 (442)
T PLN02208 80 IPISMDNLLSEALDLTRDQVEAAVRAL----------RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVP 147 (442)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhC----------CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccC
Confidence 2 2333344556666677777655 78999999 5789999999999999999999887653 33332
Q ss_pred HHHhcCCCCCCCCCCCCcccccCCCCCC----CCCCCCCcccccCCchHHHHHHHhh-cccccceEEEEcchhhhhHHHH
Q 044218 162 LLERNGHFPFDLSEKGDELVDCIPGLEP----TKLADFPTIFHGAGRKILHAALQSA-SKVSKAQYLLLSSVYKLEAKTI 236 (436)
Q Consensus 162 ~~~~~~~~p~~~~~~~~~~~~~~p~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~ 236 (436)
. . ..+ ..+|+++. +...+++.+ ......+....+.. .....++++++||+.++|+..+
T Consensus 148 ~--~--~~~-----------~~~pglp~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~ 210 (442)
T PLN02208 148 G--G--KLG-----------VPPPGYPSSKVLFRENDAHAL--ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFC 210 (442)
T ss_pred c--c--ccC-----------CCCCCCCCcccccCHHHcCcc--cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHH
Confidence 1 0 000 01233332 334444432 11223334444332 3556789999999999999999
Q ss_pred HHHhhcCCCCeEEecCCC---------------------------CCCCCCcccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 044218 237 DALKEEFSFPVLLAQFCT---------------------------SHWEAFYSVSSAQMDEIIAGIRNSGVRYLWVTRGD 289 (436)
Q Consensus 237 ~~~~~~~~~~~~~vGpl~---------------------------~~wGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~ 289 (436)
++++..+.++++.|||+. .+|||+...+.+++.+++.+++..+.+|+|+.+.+
T Consensus 211 ~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~ 290 (442)
T PLN02208 211 DYISRQYHKKVLLTGPMFPEPDTSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPP 290 (442)
T ss_pred HHHHhhcCCCEEEEeecccCcCCCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 999876678999999995 12499988899999999999988999999988753
Q ss_pred C----------CcccccccC-CCcEEeeccchhhhccccCcceeeccCCcchHHHHHhcCCcEeeccccccchhhHHHHh
Q 044218 290 T----------SRFKDGHAD-DRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIV 358 (436)
Q Consensus 290 ~----------~~~~~~~~~-~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~ 358 (436)
. ++|.++ +. .|+.+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++++
T Consensus 291 ~~~~~~~~~lp~~f~~r-~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~ 369 (442)
T PLN02208 291 RGSSTVQEGLPEGFEER-VKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMT 369 (442)
T ss_pred CcccchhhhCCHHHHHH-HhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHH
Confidence 1 111111 11 46777799999999999999999999999999999999999999999999999999988
Q ss_pred hhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044218 359 QDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDISR 435 (436)
Q Consensus 359 ~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 435 (436)
+.||+|+.++. .. .+.+++++|.++|+++|++++.+++.+|++++++++.+. ++|||+.++++|++++++
T Consensus 370 ~~~g~gv~~~~-~~--~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 370 EEFEVSVEVSR-EK--TGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEELQE 439 (442)
T ss_pred HHhceeEEecc-cc--CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHH
Confidence 77899999986 21 245899999999999997642122889999999999985 378999999999999864
No 18
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=2.3e-57 Score=438.97 Aligned_cols=392 Identities=25% Similarity=0.364 Sum_probs=302.8
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCC--cEEEE--Eecccccccc----CCCC-CCCCeeEEecCCCCCCCC--
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPD--ILITF--VVTEEWLGFI----GSQS-KPHNIRFRTLPNTIPSEH-- 80 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~G--h~Vt~--~~~~~~~~~~----~~~~-~~~~i~~~~l~~~l~~~~-- 80 (436)
...||+++|+|++||++|++.||+.|+. +| +.||+ +.++.+...+ +... ..++|++..+|++.+...
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~--~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~ 79 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILS--KNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSS 79 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHh--CCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCcc
Confidence 4689999999999999999999999999 88 45555 5554432221 1111 122699999997654211
Q ss_pred CCCCCHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHHhh
Q 044218 81 GRANDFAGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHF 160 (436)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~ 160 (436)
....+....+..+...+...+.+++.++... + +++|||+|.+.+|+..+|+++|||.+.++++++..++++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~--pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~ 153 (451)
T PLN03004 80 TSRHHHESLLLEILCFSNPSVHRTLFSLSRN----F--NVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYL 153 (451)
T ss_pred ccccCHHHHHHHHHHhhhHHHHHHHHhcCCC----C--CceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHH
Confidence 1112334445455567788888888876322 1 569999999999999999999999999999999999888876
Q ss_pred HHHHhcCCCCCCCCCCCCcccccCCCCCCCCCCCCCcccccCCchHHHHHHHhhcccccceEEEEcchhhhhHHHHHHHh
Q 044218 161 ELLERNGHFPFDLSEKGDELVDCIPGLEPTKLADFPTIFHGAGRKILHAALQSASKVSKAQYLLLSSVYKLEAKTIDALK 240 (436)
Q Consensus 161 ~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 240 (436)
+..... .+.... .......+|+++.+...+++.++.......+..+.........++++++|||+++|+..+++++
T Consensus 154 ~~~~~~--~~~~~~--~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~ 229 (451)
T PLN03004 154 PTIDET--TPGKNL--KDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAIT 229 (451)
T ss_pred Hhcccc--cccccc--ccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHH
Confidence 542211 110000 0111235788877888888887654333444555555566677889999999999999999997
Q ss_pred hcC-CCCeEEecCCC----------------CCC--------------CCCcccChHHHHHHHHHHHhCCCeEEEEEcCC
Q 044218 241 EEF-SFPVLLAQFCT----------------SHW--------------EAFYSVSSAQMDEIIAGIRNSGVRYLWVTRGD 289 (436)
Q Consensus 241 ~~~-~~~~~~vGpl~----------------~~w--------------GS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~ 289 (436)
... .++++.||||. .+| ||+...+.+++.+++.+|+.++++|||+++..
T Consensus 230 ~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~ 309 (451)
T PLN03004 230 EELCFRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNP 309 (451)
T ss_pred hcCCCCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 743 36899999994 023 99988899999999999999999999999853
Q ss_pred C--------------CcccccccC-CCcEEeeccchhhhccccCcceeeccCCcchHHHHHhcCCcEeeccccccchhhH
Q 044218 290 T--------------SRFKDGHAD-DRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNS 354 (436)
Q Consensus 290 ~--------------~~~~~~~~~-~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na 354 (436)
. ++|.++ .. .|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||
T Consensus 310 ~~~~~~~~~~~~~lp~gf~er-~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na 388 (451)
T PLN03004 310 PELEKTELDLKSLLPEGFLSR-TEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNR 388 (451)
T ss_pred ccccccccchhhhCChHHHHh-ccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhH
Confidence 1 122222 22 4677789999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHH
Q 044218 355 KQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSIT 424 (436)
Q Consensus 355 ~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~ 424 (436)
+++++.||+|+.++. .. .+.+++++|+++|+++|++ ++||++++++++..++|+++||||++
T Consensus 389 ~~~~~~~g~g~~l~~-~~--~~~~~~e~l~~av~~vm~~-----~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 389 VMIVDEIKIAISMNE-SE--TGFVSSTEVEKRVQEIIGE-----CPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHHHHHhCceEEecC-Cc--CCccCHHHHHHHHHHHhcC-----HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999988899999985 21 1357999999999999987 89999999999999999999999874
No 19
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.9e-56 Score=430.85 Aligned_cols=387 Identities=19% Similarity=0.311 Sum_probs=294.3
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCC-CC--CeeEEecC--CCCCCCCCCCCC-
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSK-PH--NIRFRTLP--NTIPSEHGRAND- 85 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~-~~--~i~~~~l~--~~l~~~~~~~~~- 85 (436)
.++||+++|+|++||++|++.||+.|+. +|+.|||++++.+...+.+... +. .+.+.++| +++|+..+...+
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~--~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~~ 81 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAE--KGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSEI 81 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHh--CCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccccccC
Confidence 4689999999999999999999999999 9999999999987665554311 21 37777787 677765332211
Q ss_pred ---HHHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHHhhHH
Q 044218 86 ---FAGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFEL 162 (436)
Q Consensus 86 ---~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~ 162 (436)
....+....+.+.+.+.++++.+ ++||||+|. .+|+..+|+++|||++.++++++..++++.+ +
T Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~l~~~----------~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~- 148 (453)
T PLN02764 82 PVTSADLLMSAMDLTRDQVEVVVRAV----------EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-P- 148 (453)
T ss_pred ChhHHHHHHHHHHHhHHHHHHHHHhC----------CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c-
Confidence 22334445556777888888775 789999995 8999999999999999999999988777652 1
Q ss_pred HHhcCCCCCCCCCCCCcccccCCCCC----CCCCCCCCcccc--c--CCchHHHHHHHhhcccccceEEEEcchhhhhHH
Q 044218 163 LERNGHFPFDLSEKGDELVDCIPGLE----PTKLADFPTIFH--G--AGRKILHAALQSASKVSKAQYLLLSSVYKLEAK 234 (436)
Q Consensus 163 ~~~~~~~p~~~~~~~~~~~~~~p~~~----~~~~~~l~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 234 (436)
....+ ..+|+++ .++..+++.+.. . ..........+.......++++++|||+++|+.
T Consensus 149 ---~~~~~-----------~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~ 214 (453)
T PLN02764 149 ---GGELG-----------VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGN 214 (453)
T ss_pred ---cccCC-----------CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHH
Confidence 10100 0123332 133344443221 0 001122222222245667889999999999999
Q ss_pred HHHHHhhcCCCCeEEecCCC-------------CCC--------------CCCcccChHHHHHHHHHHHhCCCeEEEEEc
Q 044218 235 TIDALKEEFSFPVLLAQFCT-------------SHW--------------EAFYSVSSAQMDEIIAGIRNSGVRYLWVTR 287 (436)
Q Consensus 235 ~~~~~~~~~~~~~~~vGpl~-------------~~w--------------GS~~~~~~~~~~~l~~al~~~~~~~i~~~~ 287 (436)
.+++++...+++++.|||+. .+| ||+...+.+++.+++.+|+..+.+|+|+++
T Consensus 215 ~~~~~~~~~~~~v~~VGPL~~~~~~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r 294 (453)
T PLN02764 215 FCDYIEKHCRKKVLLTGPVFPEPDKTRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVK 294 (453)
T ss_pred HHHHHHhhcCCcEEEeccCccCccccccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 99999874356899999994 124 999888999999999999999999999998
Q ss_pred CC----------CCcccccccCCCcEEe-eccchhhhccccCcceeeccCCcchHHHHHhcCCcEeeccccccchhhHHH
Q 044218 288 GD----------TSRFKDGHADDRGIVV-PWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQ 356 (436)
Q Consensus 288 ~~----------~~~~~~~~~~~~~~v~-~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 356 (436)
.. +++|.++ ..+++.++ +|+||.+||+|+++++|||||||||+.||+++|||||++|+++||+.||++
T Consensus 295 ~~~~~~~~~~~lp~~f~~r-~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~ 373 (453)
T PLN02764 295 PPRGSSTIQEALPEGFEER-VKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRL 373 (453)
T ss_pred CCCCCcchhhhCCcchHhh-hccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHH
Confidence 42 1234443 34455554 999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044218 357 IVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDISR 435 (436)
Q Consensus 357 ~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 435 (436)
+++.||+|+.+.. +. .+.+++++|+++|+++|++++.+.+.+|++++++++++++ +|||++++++|+++++.
T Consensus 374 l~~~~g~gv~~~~-~~--~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~lv~~~~~ 445 (453)
T PLN02764 374 LSDELKVSVEVAR-EE--TGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDNFIESLQD 445 (453)
T ss_pred HHHHhceEEEecc-cc--CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Confidence 9877899998864 20 1347999999999999976321227899999999999975 89999999999999864
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.1e-56 Score=439.54 Aligned_cols=411 Identities=25% Similarity=0.386 Sum_probs=302.0
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCC---cEEEEEecccccc-----ccCCCC-CCCCeeEEecCCCCCC-CCC
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPD---ILITFVVTEEWLG-----FIGSQS-KPHNIRFRTLPNTIPS-EHG 81 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~G---h~Vt~~~~~~~~~-----~~~~~~-~~~~i~~~~l~~~l~~-~~~ 81 (436)
++.||+++|+|++||++|++.||+.|+. +| +.||++.+..... .+.... ...+|+|..+|++..+ ..+
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~--~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~ 79 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLIN--LDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPME 79 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHh--CCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcccc
Confidence 4679999999999999999999999999 98 4577777543221 111111 1126999999865421 111
Q ss_pred C-CCCHHHHHHHHHHhchHHHHHHHHHhhcCCCC--CCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHH
Q 044218 82 R-ANDFAGFLEAVFTKMEAPFEELLDRLLLDDDE--QPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFH 158 (436)
Q Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~ 158 (436)
. .......+..+...+...+++.++++...... .. +++|||+|.+.+|+..+|+++|||++.++++++..++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~--pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~ 157 (475)
T PLN02167 80 LFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSV--RVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMK 157 (475)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC--CeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 0 11122333444456666777777765321000 01 3599999999999999999999999999999998888877
Q ss_pred hhHHHHhcCCCCCCCCCCCCcccccCCCC-CCCCCCCCCcccccCCchHHHHHHHhhcccccceEEEEcchhhhhHHHHH
Q 044218 159 HFELLERNGHFPFDLSEKGDELVDCIPGL-EPTKLADFPTIFHGAGRKILHAALQSASKVSKAQYLLLSSVYKLEAKTID 237 (436)
Q Consensus 159 ~~~~~~~~~~~p~~~~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (436)
+++..... .+.............+|++ ..++..+++..+... ..+..+.........++++++|||+++|+..++
T Consensus 158 ~~~~~~~~--~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~ 233 (475)
T PLN02167 158 YLPERHRK--TASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMK--ESYEAWVEIAERFPEAKGILVNSFTELEPNAFD 233 (475)
T ss_pred HHHHhccc--cccccccCCCCCeeECCCCCCCCChhhCchhhhCc--chHHHHHHHHHhhcccCEeeeccHHHHHHHHHH
Confidence 66542211 1100000000111236776 346777777654422 123344455556677899999999999999999
Q ss_pred HHhhc--CCCCeEEecCCC--------------------------------CCCCCCcccChHHHHHHHHHHHhCCCeEE
Q 044218 238 ALKEE--FSFPVLLAQFCT--------------------------------SHWEAFYSVSSAQMDEIIAGIRNSGVRYL 283 (436)
Q Consensus 238 ~~~~~--~~~~~~~vGpl~--------------------------------~~wGS~~~~~~~~~~~l~~al~~~~~~~i 283 (436)
+++.. ..+++++|||+. .+|||+...+..++.+++.+|+.++++||
T Consensus 234 ~l~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~fl 313 (475)
T PLN02167 234 YFSRLPENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFL 313 (475)
T ss_pred HHHhhcccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEE
Confidence 98753 126899999995 01389887889999999999999999999
Q ss_pred EEEcCCC-----------CcccccccCCCcEEeeccchhhhccccCcceeeccCCcchHHHHHhcCCcEeeccccccchh
Q 044218 284 WVTRGDT-----------SRFKDGHADDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVP 352 (436)
Q Consensus 284 ~~~~~~~-----------~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~ 352 (436)
|+++... +++.++ +.+++++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 314 w~~~~~~~~~~~~~~~lp~~~~er-~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~ 392 (475)
T PLN02167 314 WSIRTNPAEYASPYEPLPEGFMDR-VMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQL 392 (475)
T ss_pred EEEecCcccccchhhhCChHHHHH-hccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchh
Confidence 9987532 122222 3455688899999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhceeeEeecCC-ccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 044218 353 NSKQIVQDWKTGWRVKKPE-IASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLK 431 (436)
Q Consensus 353 na~~~~~~lG~G~~~~~~~-~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~ 431 (436)
||+++.+.||+|+.+.... ..+...+++++|+++|+++|.++ +.||++|+++++++++|+++||||+.++++|++
T Consensus 393 na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~----~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~ 468 (475)
T PLN02167 393 NAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE----DVPRKKVKEIAEAARKAVMDGGSSFVAVKRFID 468 (475)
T ss_pred hHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9988666779999987510 00113479999999999999763 589999999999999999999999999999999
Q ss_pred HHHh
Q 044218 432 DISR 435 (436)
Q Consensus 432 ~~~~ 435 (436)
+++.
T Consensus 469 ~i~~ 472 (475)
T PLN02167 469 DLLG 472 (475)
T ss_pred HHHh
Confidence 9864
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=3.1e-56 Score=432.29 Aligned_cols=384 Identities=20% Similarity=0.322 Sum_probs=288.5
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCC-CCCeeEEecC----CCCCCCCCCCCC
Q 044218 11 TSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSK-PHNIRFRTLP----NTIPSEHGRAND 85 (436)
Q Consensus 11 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~-~~~i~~~~l~----~~l~~~~~~~~~ 85 (436)
.+++||+++|+|++||++|++.||+.|++ +|++|||++++.+...++.... +.+++|..++ +++|+..+...+
T Consensus 2 ~~~~HVvlvPfpaqGHi~PmL~LAk~Las--~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~ 79 (446)
T PLN00414 2 GSKFHAFMYPWFGFGHMIPYLHLANKLAE--KGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASD 79 (446)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHh--CCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCccccccc
Confidence 46789999999999999999999999999 9999999999988766654432 2257886554 667654333223
Q ss_pred H----HHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHHhhH
Q 044218 86 F----AGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFE 161 (436)
Q Consensus 86 ~----~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~ 161 (436)
+ ...+......+.+.++++++.. +|||||+|. ++|+..+|+++|||++.++++++..++++.+..
T Consensus 80 l~~~~~~~~~~a~~~l~~~l~~~L~~~----------~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~ 148 (446)
T PLN00414 80 LPNSTKKPIFDAMDLLRDQIEAKVRAL----------KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPR 148 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcC----------CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcH
Confidence 2 2223333345555555555443 789999995 899999999999999999999998887776521
Q ss_pred HHHhcCCCCCCCCCCCCcccccCCCCCC----CCCCC--CCcccccCCchHHHHHHHhhcccccceEEEEcchhhhhHHH
Q 044218 162 LLERNGHFPFDLSEKGDELVDCIPGLEP----TKLAD--FPTIFHGAGRKILHAALQSASKVSKAQYLLLSSVYKLEAKT 235 (436)
Q Consensus 162 ~~~~~~~~p~~~~~~~~~~~~~~p~~~~----~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (436)
.....+ +|+++. +...+ ++.++.. ....+.+.......++++++|||.++|+..
T Consensus 149 ---~~~~~~-------------~pg~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~ 208 (446)
T PLN00414 149 ---AELGFP-------------PPDYPLSKVALRGHDANVCSLFAN----SHELFGLITKGLKNCDVVSIRTCVELEGNL 208 (446)
T ss_pred ---hhcCCC-------------CCCCCCCcCcCchhhcccchhhcc----cHHHHHHHHHhhccCCEEEEechHHHHHHH
Confidence 100000 122211 11111 1222211 112233333456678999999999999999
Q ss_pred HHHHhhcCCCCeEEecCCC---------------CCC--------------CCCcccChHHHHHHHHHHHhCCCeEEEEE
Q 044218 236 IDALKEEFSFPVLLAQFCT---------------SHW--------------EAFYSVSSAQMDEIIAGIRNSGVRYLWVT 286 (436)
Q Consensus 236 ~~~~~~~~~~~~~~vGpl~---------------~~w--------------GS~~~~~~~~~~~l~~al~~~~~~~i~~~ 286 (436)
+++++....++++.|||+. .+| ||+...+.+++.+++.+|+..|.+|+|++
T Consensus 209 ~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvv 288 (446)
T PLN00414 209 CDFIERQCQRKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAV 288 (446)
T ss_pred HHHHHHhcCCCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 9999875456899999994 124 99998999999999999999999999999
Q ss_pred cCC----------CCcccccccCCCcEEe-eccchhhhccccCcceeeccCCcchHHHHHhcCCcEeeccccccchhhHH
Q 044218 287 RGD----------TSRFKDGHADDRGIVV-PWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSK 355 (436)
Q Consensus 287 ~~~----------~~~~~~~~~~~~~~v~-~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 355 (436)
+.. +++|.++ +.+++.|+ +|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+
T Consensus 289 r~~~~~~~~~~~lp~~f~~r-~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~ 367 (446)
T PLN00414 289 MPPKGSSTVQEALPEGFEER-VKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITR 367 (446)
T ss_pred ecCCCcccchhhCChhHHHH-hcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHH
Confidence 752 1245444 55666666 99999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044218 356 QIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDISR 435 (436)
Q Consensus 356 ~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 435 (436)
++++.||+|+.+.. .. .+.+++++|+++|+++|.+++.++++||++|+++++.+. ++||++ ..+++|++++++
T Consensus 368 ~~~~~~g~g~~~~~-~~--~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~s-s~l~~~v~~~~~ 440 (446)
T PLN00414 368 LLTEELEVSVKVQR-ED--SGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLS-GYADKFVEALEN 440 (446)
T ss_pred HHHHHhCeEEEecc-cc--CCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcH-HHHHHHHHHHHH
Confidence 99877899999975 21 135899999999999997633223789999999999975 346633 448999999864
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=7.9e-42 Score=337.79 Aligned_cols=352 Identities=15% Similarity=0.169 Sum_probs=243.8
Q ss_pred CcEEEEE-cCCCccChHHHHHHHHHHHhCCCCcEEEEEecccccc--ccCCCCCCCCeeEEecCC---CCCCCCCCC---
Q 044218 13 LCHVLAL-PYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLG--FIGSQSKPHNIRFRTLPN---TIPSEHGRA--- 83 (436)
Q Consensus 13 ~~~vl~~-~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~--~~~~~~~~~~i~~~~l~~---~l~~~~~~~--- 83 (436)
..||+++ |.++.+|+.-+-+|+++|++ |||+||++++..... ..... +++...++. .+.......
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~--rGH~VTvi~p~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~ 93 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAE--RGHNVTVIKPTLRVYYASHLCG----NITEIDASLSVEYFKKLVKSSAVF 93 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHH--cCCeEEEEecccccccccCCCC----CEEEEEcCCChHHHHHHHhhhhHH
Confidence 3557755 88999999999999999999 999999998754211 11112 556555531 100000000
Q ss_pred ---C---CH----HHHHHHHHHhchHHHH--HHHHHhh--cCCCCCCCCCeeEEEEcCCcchHHHHhHhc-CCCeEEEcc
Q 044218 84 ---N---DF----AGFLEAVFTKMEAPFE--ELLDRLL--LDDDEQPAAAVTAIIADTYLPWVVDVGNRR-NIPVASLWT 148 (436)
Q Consensus 84 ---~---~~----~~~~~~~~~~~~~~~~--~ll~~~~--~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~-gIP~v~~~~ 148 (436)
. +. ..........|...+. ++.+.++ +. ++|++|+|.+..|+..+|+++ ++|.|.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~-------kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss 166 (507)
T PHA03392 94 RKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNN-------KFDLLVTEAFLDYPLVFSHLFGDAPVIQISS 166 (507)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCC-------ceeEEEecccchhHHHHHHHhCCCCEEEEcC
Confidence 0 00 1111122233333332 2333333 22 899999999999999999999 999888777
Q ss_pred hhHHHHHHHHhhHHHHhcCCCCCCCCCCCCcccccCCCCCCCCCCCCCcccccCCchH---------------HHHH-HH
Q 044218 149 MSALVFSVFHHFELLERNGHFPFDLSEKGDELVDCIPGLEPTKLADFPTIFHGAGRKI---------------LHAA-LQ 212 (436)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~---------------~~~~-~~ 212 (436)
+....... ... +..| ..+.++|... ....+-+.+.++..+.. .... .+
T Consensus 167 ~~~~~~~~----~~~---gg~p--------~~~syvP~~~-~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~ 230 (507)
T PHA03392 167 GYGLAENF----ETM---GAVS--------RHPVYYPNLW-RSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQ 230 (507)
T ss_pred CCCchhHH----Hhh---ccCC--------CCCeeeCCcc-cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 54432111 100 0011 1234555432 22234444444211110 0001 11
Q ss_pred hh--------cccccceEEEEcchhhhhHHHHHHHhhcCCCCeEEecCCC--------------------------CCCC
Q 044218 213 SA--------SKVSKAQYLLLSSVYKLEAKTIDALKEEFSFPVLLAQFCT--------------------------SHWE 258 (436)
Q Consensus 213 ~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGpl~--------------------------~~wG 258 (436)
.+ +.....+.+++|+.+.++.+ ++ +++++.+|||+. .+||
T Consensus 231 ~f~~~~~~~~~l~~~~~l~lvns~~~~d~~-----rp-~~p~v~~vGgi~~~~~~~~~l~~~l~~fl~~~~~g~V~vS~G 304 (507)
T PHA03392 231 QFGPDTPTIRELRNRVQLLFVNVHPVFDNN-----RP-VPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNSTNGVVYVSFG 304 (507)
T ss_pred HcCCCCCCHHHHHhCCcEEEEecCccccCC-----CC-CCCCeeeecccccCCCCCCCCCHHHHHHHhcCCCcEEEEECC
Confidence 11 11224568899999888864 65 889999999985 1238
Q ss_pred CCcc---cChHHHHHHHHHHHhCCCeEEEEEcCCCCcccccccCCCcEEeeccchhhhccccCcceeeccCCcchHHHHH
Q 044218 259 AFYS---VSSAQMDEIIAGIRNSGVRYLWVTRGDTSRFKDGHADDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESL 335 (436)
Q Consensus 259 S~~~---~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal 335 (436)
|... .+.+.+..+++++++.+++|||++++... ... .|+|+++++|+||.+||+|+.+++||||||+||++||+
T Consensus 305 S~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~--~~~-~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal 381 (507)
T PHA03392 305 SSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE--AIN-LPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAI 381 (507)
T ss_pred CCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC--ccc-CCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHH
Confidence 8753 46788999999999999999999986432 113 48999999999999999999999999999999999999
Q ss_pred hcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHH
Q 044218 336 YAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICRE 414 (436)
Q Consensus 336 ~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~ 414 (436)
++|||||++|+++||+.||+++++. |+|+.+++ . .+|+++|.++|+++|+| ++|++||+++++.+++
T Consensus 382 ~~GvP~v~iP~~~DQ~~Na~rv~~~-G~G~~l~~-~-----~~t~~~l~~ai~~vl~~-----~~y~~~a~~ls~~~~~ 448 (507)
T PHA03392 382 DALVPMVGLPMMGDQFYNTNKYVEL-GIGRALDT-V-----TVSAAQLVLAIVDVIEN-----PKYRKNLKELRHLIRH 448 (507)
T ss_pred HcCCCEEECCCCccHHHHHHHHHHc-CcEEEecc-C-----CcCHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHh
Confidence 9999999999999999999999977 99999998 3 37999999999999998 9999999999999996
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.9e-43 Score=355.12 Aligned_cols=350 Identities=22% Similarity=0.350 Sum_probs=206.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCCCCCC--CCCH-HHHHH
Q 044218 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPSEHGR--ANDF-AGFLE 91 (436)
Q Consensus 15 ~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~--~~~~-~~~~~ 91 (436)
||+++|. +.||+.++..|+++|++ |||+||++++..... +... .+.++++..++...+..... ..+. ...+.
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~--rGH~VTvl~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAE--RGHNVTVLTPSPSSS-LNPS-KPSNIRFETYPDPYPEEEFEEIFPEFISKFFS 76 (500)
T ss_dssp -----------SHHHHHHHHHHHHH--H-TTSEEEHHHHHHT--------S-CCEEEE-----TT------TTHHHHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHh--cCCceEEEEeecccc-cccc-cccceeeEEEcCCcchHHHhhhhHHHHHHHhh
Confidence 6778875 78999999999999999 999999998865322 2210 11256777776544332111 1111 01111
Q ss_pred ---------HH-----------HHhchHHH--HHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcch
Q 044218 92 ---------AV-----------FTKMEAPF--EELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTM 149 (436)
Q Consensus 92 ---------~~-----------~~~~~~~~--~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~ 149 (436)
.. ...|...+ .++++.+++. ++|++|+|.+.+|+..+|+.++||.+.+.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~-------~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~ 149 (500)
T PF00201_consen 77 ESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE-------KFDLVISDAFDPCGLALAHYLGIPVIIISSS 149 (500)
T ss_dssp HHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH-------HHCT-EEEEEESSHHHHHHHHHHTHHHHHHC
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh-------ccccceEeeccchhHHHHHHhcCCeEEEecc
Confidence 00 01111111 1122233333 7999999999999999999999999875432
Q ss_pred hHHHHHHHHhhHHHHhcCCCCCCCCCCCCcccccCCCCCCCCCCCCCcccccCCchHHHHH----HHhhccc--------
Q 044218 150 SALVFSVFHHFELLERNGHFPFDLSEKGDELVDCIPGLEPTKLADFPTIFHGAGRKILHAA----LQSASKV-------- 217 (436)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~-------- 217 (436)
.... . ..... ......+.++|... ....+.+.+.++..+...... .......
T Consensus 150 ~~~~------~-------~~~~~--~g~p~~psyvP~~~-s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~ 213 (500)
T PF00201_consen 150 TPMY------D-------LSSFS--GGVPSPPSYVPSMF-SDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKY 213 (500)
T ss_dssp CSCS------C-------CTCCT--SCCCTSTTSTTCBC-CCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEE
T ss_pred cccc------h-------hhhhc--cCCCCChHHhcccc-ccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhh
Confidence 2110 0 00000 00011234444332 122333444443333322211 1111110
Q ss_pred -----------ccceEEEEcchhhhhHHHHHHHhhcCCCCeEEecCCC-------------------------CCCCCCc
Q 044218 218 -----------SKAQYLLLSSVYKLEAKTIDALKEEFSFPVLLAQFCT-------------------------SHWEAFY 261 (436)
Q Consensus 218 -----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGpl~-------------------------~~wGS~~ 261 (436)
.....+++|+.+.++ ++++ ..|++.+||++. .+|||..
T Consensus 214 ~~~~~~~~~~~~~~~l~l~ns~~~ld-----~prp-~~p~v~~vGgl~~~~~~~l~~~~~~~~~~~~~~~vv~vsfGs~~ 287 (500)
T PF00201_consen 214 FGFPFSFRELLSNASLVLINSHPSLD-----FPRP-LLPNVVEVGGLHIKPAKPLPEELWNFLDSSGKKGVVYVSFGSIV 287 (500)
T ss_dssp SS-GGGCHHHHHHHHHCCSSTEEE---------HH-HHCTSTTGCGC-S----TCHHHHHHHTSTTTTTEEEEEE-TSSS
T ss_pred cccccccHHHHHHHHHHhhhccccCc-----CCcc-hhhcccccCccccccccccccccchhhhccCCCCEEEEecCccc
Confidence 111222334443333 3455 567889999885 1259987
Q ss_pred c-cChHHHHHHHHHHHhCCCeEEEEEcCCCCcccccccCCCcEEeeccchhhhccccCcceeeccCCcchHHHHHhcCCc
Q 044218 262 S-VSSAQMDEIIAGIRNSGVRYLWVTRGDTSRFKDGHADDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVP 340 (436)
Q Consensus 262 ~-~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP 340 (436)
. .+.+.+..+++++++++++|||++++.. ... +++|+++++|+||.+||.|+++++||||||+||+.||+++|||
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~---~~~-l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP 363 (500)
T PF00201_consen 288 SSMPEEKLKEIAEAFENLPQRFIWKYEGEP---PEN-LPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVP 363 (500)
T ss_dssp TT-HHHHHHHHHHHHHCSTTEEEEEETCSH---GCH-HHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--
T ss_pred chhHHHHHHHHHHHHhhCCCcccccccccc---ccc-ccceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCC
Confidence 5 4445588999999999999999998842 122 4789999999999999999999999999999999999999999
Q ss_pred EeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHH
Q 044218 341 MLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICRE 414 (436)
Q Consensus 341 ~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~ 414 (436)
||++|+++||+.||+++++. |+|+.++. . .+|+++|.++|+++|+| ++|++||+++++++++
T Consensus 364 ~l~~P~~~DQ~~na~~~~~~-G~g~~l~~-~-----~~~~~~l~~ai~~vl~~-----~~y~~~a~~ls~~~~~ 425 (500)
T PF00201_consen 364 MLGIPLFGDQPRNAARVEEK-GVGVVLDK-N-----DLTEEELRAAIREVLEN-----PSYKENAKRLSSLFRD 425 (500)
T ss_dssp EEE-GCSTTHHHHHHHHHHT-TSEEEEGG-G-----C-SHHHHHHHHHHHHHS-----HHHHHHHHHHHHTTT-
T ss_pred ccCCCCcccCCccceEEEEE-eeEEEEEe-c-----CCcHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHhc
Confidence 99999999999999999988 99999998 3 38999999999999998 8999999999999986
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=2.2e-39 Score=315.62 Aligned_cols=340 Identities=20% Similarity=0.272 Sum_probs=236.6
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCCCCCC----CCCHHHHHHHHH
Q 044218 19 LPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPSEHGR----ANDFAGFLEAVF 94 (436)
Q Consensus 19 ~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~----~~~~~~~~~~~~ 94 (436)
+.+|++||++|+++||++|++ +||+|+|++++.+.+.+++. |+.|.+++..+...... ..++......+.
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~--~Gh~V~~~~~~~~~~~v~~~----G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVA--RGHRVTYATTEEFAERVEAA----GAEFVLYGSALPPPDNPPENTEEEPIDIIEKLL 74 (392)
T ss_pred CCCCccccccccHHHHHHHHh--CCCeEEEEeCHHHHHHHHHc----CCEEEecCCcCccccccccccCcchHHHHHHHH
Confidence 357999999999999999999 99999999999999999999 99999998654321000 023344444444
Q ss_pred HhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHHhhHHHHhcCCCCCCCC
Q 044218 95 TKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERNGHFPFDLS 174 (436)
Q Consensus 95 ~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 174 (436)
..+...+..+.+.+.+. +||+||+|.+++++..+|+.+|||+|.+++.+... ..++.. ..|..
T Consensus 75 ~~~~~~~~~l~~~~~~~-------~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~~~----~~~~~-- 137 (392)
T TIGR01426 75 DEAEDVLPQLEEAYKGD-------RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEFEEM----VSPAG-- 137 (392)
T ss_pred HHHHHHHHHHHHHhcCC-------CCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----cccccc----ccccc--
Confidence 44444555555555444 89999999988899999999999999885433210 000000 00000
Q ss_pred CCCCcccccCCCCCCCCCCCCCcccccCCchHHHHHHHhhcc---------cccceEEEEcchhhhhHHHHHHHhhcCCC
Q 044218 175 EKGDELVDCIPGLEPTKLADFPTIFHGAGRKILHAALQSASK---------VSKAQYLLLSSVYKLEAKTIDALKEEFSF 245 (436)
Q Consensus 175 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 245 (436)
.......+. . ... ... ....+...++.... ....+..+....+.+++ ....+++
T Consensus 138 ---~~~~~~~~~---~-~~~----~~~-~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~-----~~~~~~~ 200 (392)
T TIGR01426 138 ---EGSAEEGAI---A-ERG----LAE-YVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQP-----AGETFDD 200 (392)
T ss_pred ---hhhhhhhcc---c-cch----hHH-HHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCC-----CccccCC
Confidence 000000000 0 000 000 00011111111110 00111123333333433 2444778
Q ss_pred CeEEecCCC------CCC--------------CCCcccChHHHHHHHHHHHhCCCeEEEEEcCCCC--cccccccCCCcE
Q 044218 246 PVLLAQFCT------SHW--------------EAFYSVSSAQMDEIIAGIRNSGVRYLWVTRGDTS--RFKDGHADDRGI 303 (436)
Q Consensus 246 ~~~~vGpl~------~~w--------------GS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~--~~~~~~~~~~~~ 303 (436)
+++++||+. ..| ||+.......+..+++++.+.++++|+.++.... .+.+ .++|++
T Consensus 201 ~~~~~Gp~~~~~~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~--~~~~v~ 278 (392)
T TIGR01426 201 SFTFVGPCIGDRKEDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPADLGE--LPPNVE 278 (392)
T ss_pred CeEEECCCCCCccccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCChhHhcc--CCCCeE
Confidence 899999975 224 8875555568888999999999999998876432 2323 478999
Q ss_pred EeeccchhhhccccCcceeeccCCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHH
Q 044218 304 VVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEI 383 (436)
Q Consensus 304 v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l 383 (436)
+.+|+||.++|+++++ +|||||+||+.||+++|+|+|++|...||+.||+++++. |+|+.+.. .. +++++|
T Consensus 279 ~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~-g~g~~l~~-~~-----~~~~~l 349 (392)
T TIGR01426 279 VRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAEL-GLGRHLPP-EE-----VTAEKL 349 (392)
T ss_pred EeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHC-CCEEEecc-cc-----CCHHHH
Confidence 9999999999999998 999999999999999999999999999999999999976 99999886 33 799999
Q ss_pred HHHHHHHhccCccchHHHHHHHHHHHHHHHH
Q 044218 384 TELVKRFMDLNSDERKEMSKRAREVQEICRE 414 (436)
Q Consensus 384 ~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~ 414 (436)
.++|+++|++ ++|+++++++++.++.
T Consensus 350 ~~ai~~~l~~-----~~~~~~~~~l~~~~~~ 375 (392)
T TIGR01426 350 REAVLAVLSD-----PRYAERLRKMRAEIRE 375 (392)
T ss_pred HHHHHHHhcC-----HHHHHHHHHHHHHHHH
Confidence 9999999988 8999999999999986
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=3e-39 Score=316.07 Aligned_cols=345 Identities=17% Similarity=0.143 Sum_probs=230.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCCCCCC-----------
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPSEHGR----------- 82 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~----------- 82 (436)
|||+|++.|+.||++|+++||++|++ +||+|+|++++.+...++.. |++|.++++........
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~--rGh~V~~~t~~~~~~~v~~~----G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRA--AGHEVRVATPPEFADLVEAA----GLEFVPVGGDPDELLASPERNAGLLLLG 74 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHH--CCCeEEEeeCHhHHHHHHHc----CCceeeCCCCHHHHHhhhhhcccccccc
Confidence 79999999999999999999999999 99999999999999999988 99999998543221100
Q ss_pred CCCHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHH------
Q 044218 83 ANDFAGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSV------ 156 (436)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~------ 156 (436)
..........+...+...++++++.++.. +||+||+|.+.+++..+|+++|||++.+++++......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 147 (401)
T cd03784 75 PGLLLGALRLLRREAEAMLDDLVAAARDW-------GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPPPLG 147 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccc-------CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCCccc
Confidence 01122233334444555666666655433 89999999988999999999999999997765332110
Q ss_pred -------------------HHhhHHHHhcCCCCCCCCC---CCCcccccCCCCCCCCCCCCCcccccCCchHHHHHHHhh
Q 044218 157 -------------------FHHFELLERNGHFPFDLSE---KGDELVDCIPGLEPTKLADFPTIFHGAGRKILHAALQSA 214 (436)
Q Consensus 157 -------------------~~~~~~~~~~~~~p~~~~~---~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 214 (436)
.......+.....+..... .......+.+.... ...+.+....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------------- 212 (401)
T cd03784 148 RANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLP-PPPDWPRFDL-------------- 212 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCC-CCCCccccCc--------------
Confidence 0000011111111110000 00000000000000 0000000000
Q ss_pred cccccceEEEEcc-h-hhhhHHHHHHHhhcCCCCeEEecCCCCCCCCCcc-cChHHHHHHHHHHHhCCCeEEEEEcCCCC
Q 044218 215 SKVSKAQYLLLSS-V-YKLEAKTIDALKEEFSFPVLLAQFCTSHWEAFYS-VSSAQMDEIIAGIRNSGVRYLWVTRGDTS 291 (436)
Q Consensus 215 ~~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~~~~~~~vGpl~~~wGS~~~-~~~~~~~~l~~al~~~~~~~i~~~~~~~~ 291 (436)
...+.+... . ...+.+...++.+ ..++++|. |||++. ........+++++...+.++||.++....
T Consensus 213 ----~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~-----~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~ 281 (401)
T cd03784 213 ----VTGYGFRDVPYNGPPPPELWLFLAA--GRPPVYVG-----FGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGL 281 (401)
T ss_pred ----EeCCCCCCCCCCCCCCHHHHHHHhC--CCCcEEEe-----CCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccc
Confidence 000000100 0 0112233344443 33455554 599876 34567788999999999999999887542
Q ss_pred cccccccCCCcEEeeccchhhhccccCcceeeccCCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCC
Q 044218 292 RFKDGHADDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPE 371 (436)
Q Consensus 292 ~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~ 371 (436)
.. .. .++|+++.+|+||..+|+++++ +|||||+||++||+++|||+|++|+..||+.||+++++. |+|+.++. .
T Consensus 282 ~~-~~-~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~-G~g~~l~~-~ 355 (401)
T cd03784 282 GA-ED-LPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAEL-GAGPALDP-R 355 (401)
T ss_pred cc-cC-CCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHC-CCCCCCCc-c
Confidence 22 22 4789999999999999999999 999999999999999999999999999999999999977 99999887 2
Q ss_pred ccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHH
Q 044218 372 IASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICRE 414 (436)
Q Consensus 372 ~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~ 414 (436)
.+++++|.++|+++|++ + ++++++++++.+++
T Consensus 356 -----~~~~~~l~~al~~~l~~-----~-~~~~~~~~~~~~~~ 387 (401)
T cd03784 356 -----ELTAERLAAALRRLLDP-----P-SRRRAAALLRRIRE 387 (401)
T ss_pred -----cCCHHHHHHHHHHHhCH-----H-HHHHHHHHHHHHHh
Confidence 37999999999999985 4 55667777777654
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-38 Score=303.99 Aligned_cols=368 Identities=18% Similarity=0.208 Sum_probs=234.4
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCCCCC--CC-CCHHHH
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPSEHG--RA-NDFAGF 89 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~--~~-~~~~~~ 89 (436)
+|||+|+..|++||++|+++||++|.+ +||+|+|+|++.+.+.+++. |+.|..++........ .. .....+
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~--~gheV~~~~~~~~~~~ve~a----g~~f~~~~~~~~~~~~~~~~~~~~~~~ 74 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRR--RGHEVVFASTGKFKEFVEAA----GLAFVAYPIRDSELATEDGKFAGVKSF 74 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHh--cCCeEEEEeCHHHHHHHHHh----CcceeeccccCChhhhhhhhhhccchh
Confidence 589999999999999999999999999 99999999999999999999 8777777643211110 00 111111
Q ss_pred HHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHH-hhHHHHhcCC
Q 044218 90 LEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFH-HFELLERNGH 168 (436)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~-~~~~~~~~~~ 168 (436)
.. ..........++++-+.+. .+|+++.|...+.+ .+++..++|++.............. +++.....+.
T Consensus 75 ~~-~~~~~~~~~~~~~~~~~e~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (406)
T COG1819 75 RR-LLQQFKKLIRELLELLREL-------EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGK 145 (406)
T ss_pred HH-HhhhhhhhhHHHHHHHHhc-------chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCccccccccc
Confidence 11 2233333444554555444 89999999776656 8899999999886443322110000 0000000000
Q ss_pred CCCCCCCCCCcccccCCCCCCCCCCCCCcccccCCchHHHHH-HHhhcccccc---eEEEEcchhhhhHHHHHHH--h-h
Q 044218 169 FPFDLSEKGDELVDCIPGLEPTKLADFPTIFHGAGRKILHAA-LQSASKVSKA---QYLLLSSVYKLEAKTIDAL--K-E 241 (436)
Q Consensus 169 ~p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~--~-~ 241 (436)
...+.. .+.............. +... .+....+... -.-+..+-+.++....+.. . .
T Consensus 146 -------------~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (406)
T COG1819 146 -------------LPIPLY-PLPPRLVRPLIFARSW--LPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGD 209 (406)
T ss_pred -------------cccccc-ccChhhccccccchhh--hhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCC
Confidence 000000 0000000000000000 0000 0000000000 0000000000000000000 0 0
Q ss_pred cCCCCeEEecCCC-------C------------CCCCCcccChHHHHHHHHHHHhCCCeEEEEEcCCCCcccccccCCCc
Q 044218 242 EFSFPVLLAQFCT-------S------------HWEAFYSVSSAQMDEIIAGIRNSGVRYLWVTRGDTSRFKDGHADDRG 302 (436)
Q Consensus 242 ~~~~~~~~vGpl~-------~------------~wGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~ 302 (436)
..+....++||+. . .+||.... .++++.+++++++++.++|+.+++......+ .|+|+
T Consensus 210 ~~p~~~~~~~~~~~~~~~~~~~~~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~~~~~~~--~p~n~ 286 (406)
T COG1819 210 RLPFIGPYIGPLLGEAANELPYWIPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGARDTLVN--VPDNV 286 (406)
T ss_pred CCCCCcCccccccccccccCcchhcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccccccccc--CCCce
Confidence 1122334444443 0 13888765 7889999999999999999999872222333 58999
Q ss_pred EEeeccchhhhccccCcceeeccCCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHH
Q 044218 303 IVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDE 382 (436)
Q Consensus 303 ~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~ 382 (436)
++.+|+||..+|+++++ ||||||+||++|||++|||+|++|...||+.||.++++. |+|+.++. + .+|++.
T Consensus 287 ~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~-G~G~~l~~-~-----~l~~~~ 357 (406)
T COG1819 287 IVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEEL-GAGIALPF-E-----ELTEER 357 (406)
T ss_pred EEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHc-CCceecCc-c-----cCCHHH
Confidence 99999999999999999 999999999999999999999999999999999999977 99999998 3 389999
Q ss_pred HHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 044218 383 ITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDI 433 (436)
Q Consensus 383 l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 433 (436)
|+++|+++|++ +.|+++++++++.+++. +| ...+.+.|+++
T Consensus 358 l~~av~~vL~~-----~~~~~~~~~~~~~~~~~---~g--~~~~a~~le~~ 398 (406)
T COG1819 358 LRAAVNEVLAD-----DSYRRAAERLAEEFKEE---DG--PAKAADLLEEF 398 (406)
T ss_pred HHHHHHHHhcC-----HHHHHHHHHHHHHhhhc---cc--HHHHHHHHHHH
Confidence 99999999999 99999999999999974 44 55577777664
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2.1e-35 Score=296.88 Aligned_cols=357 Identities=25% Similarity=0.375 Sum_probs=229.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCC--------eeEEecCCCCCCCCCCC-
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHN--------IRFRTLPNTIPSEHGRA- 83 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~--------i~~~~l~~~l~~~~~~~- 83 (436)
..+++++++|++||++|++.||+.|++ +||+||++.+............... +.+...+++++......
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~--~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAE--RGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDD 82 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHH--cCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHH
Confidence 578999999999999999999999999 9999999998876654433110001 11111112232221111
Q ss_pred CCHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcC-CCeEEEcchhHHHHHHHHhhHH
Q 044218 84 NDFAGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRN-IPVASLWTMSALVFSVFHHFEL 162 (436)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~g-IP~v~~~~~~~~~~~~~~~~~~ 162 (436)
.............+...+.+....+....+ . ++|++|+|.+..+...++.... |+...+.+.++....+..+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~ 158 (496)
T KOG1192|consen 83 LDISESLLELNKTCEDLLRDPLEKLLLLKS--E--KFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPL 158 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHhhc--C--CccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcc
Confidence 011122344445566666654444333210 1 3999999998777777776665 8888877766654322211110
Q ss_pred HHhcCCCCCCCCCCCCcccccCCCCCCCCCCCCCcccccCCch--------H--------HHH-HHHhh-----------
Q 044218 163 LERNGHFPFDLSEKGDELVDCIPGLEPTKLADFPTIFHGAGRK--------I--------LHA-ALQSA----------- 214 (436)
Q Consensus 163 ~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~--------~--------~~~-~~~~~----------- 214 (436)
.++|........+.+.+.....+. . ... .....
T Consensus 159 -------------------~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (496)
T KOG1192|consen 159 -------------------SYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTAS 219 (496)
T ss_pred -------------------cccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHH
Confidence 122211110000111111100000 0 000 00000
Q ss_pred cccccceEEEEcchhhhhHHHHHHHhhc-CCCCeEEecCCC--------C-------------------CCCCCc---cc
Q 044218 215 SKVSKAQYLLLSSVYKLEAKTIDALKEE-FSFPVLLAQFCT--------S-------------------HWEAFY---SV 263 (436)
Q Consensus 215 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~vGpl~--------~-------------------~wGS~~---~~ 263 (436)
.........++|+.+.++ +++. ..+++++|||+. . +|||++ ..
T Consensus 220 ~i~~~~~~~~ln~~~~~~------~~~~~~~~~v~~IG~l~~~~~~~~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~l 293 (496)
T KOG1192|consen 220 GIIVNASFIFLNSNPLLD------FEPRPLLPKVIPIGPLHVKDSKQKSPLPLEWLDILDESRHSVVYISFGSMVNSADL 293 (496)
T ss_pred HhhhcCeEEEEccCcccC------CCCCCCCCCceEECcEEecCccccccccHHHHHHHhhccCCeEEEECCcccccccC
Confidence 111222244444443333 2221 467899999987 0 139998 68
Q ss_pred ChHHHHHHHHHHHhC-CCeEEEEEcCCC-----CcccccccCCCcEEeeccchhhh-ccccCcceeeccCCcchHHHHHh
Q 044218 264 SSAQMDEIIAGIRNS-GVRYLWVTRGDT-----SRFKDGHADDRGIVVPWCDQLRV-LCHASIGGFWTHCGLNSTIESLY 336 (436)
Q Consensus 264 ~~~~~~~l~~al~~~-~~~~i~~~~~~~-----~~~~~~~~~~~~~v~~~~pq~~l-l~~~~~~~~I~hgG~~s~~eal~ 336 (436)
+.++...++.+++.+ +++|||++..+. +++.++ .++|+.+.+|+||.++ |.|+++++|||||||||++|+++
T Consensus 294 p~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~ 372 (496)
T KOG1192|consen 294 PEEQKKELAKALESLQGVTFLWKYRPDDSIYFPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIY 372 (496)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEecCCcchhhhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHh
Confidence 999999999999999 889999999753 233321 1457888899999997 69999999999999999999999
Q ss_pred cCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHH
Q 044218 337 AGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICR 413 (436)
Q Consensus 337 ~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~ 413 (436)
+|||||++|+++||+.||+++++++++++.... + ++.+++.+++.+++.+ ++|+++++++++..+
T Consensus 373 ~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~-~------~~~~~~~~~~~~il~~-----~~y~~~~~~l~~~~~ 437 (496)
T KOG1192|consen 373 SGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKR-D------LVSEELLEAIKEILEN-----EEYKEAAKRLSEILR 437 (496)
T ss_pred cCCceecCCccccchhHHHHHHhCCCEEEEehh-h------cCcHHHHHHHHHHHcC-----hHHHHHHHHHHHHHH
Confidence 999999999999999999999999555544443 3 3555599999999988 899999999999877
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=1.2e-25 Score=213.93 Aligned_cols=316 Identities=15% Similarity=0.130 Sum_probs=192.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccccc--ccCCCCCCCCeeEEecCC-CCCCCCCCCCCHHHH
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLG--FIGSQSKPHNIRFRTLPN-TIPSEHGRANDFAGF 89 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~--~~~~~~~~~~i~~~~l~~-~l~~~~~~~~~~~~~ 89 (436)
|++|+|.+.|+.||++|.++||++|.+ +||+|+|++++...+ .+++. ++.+..++. ++. ....+ ..
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~--~g~~v~~vg~~~~~e~~l~~~~----g~~~~~~~~~~l~----~~~~~-~~ 69 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKE--DNWDISYIGSHQGIEKTIIEKE----NIPYYSISSGKLR----RYFDL-KN 69 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHh--CCCEEEEEECCCccccccCccc----CCcEEEEeccCcC----CCchH-HH
Confidence 578999999999999999999999999 999999999776543 23444 788888862 221 11122 22
Q ss_pred HHHHHHhchHHHH--HHHHHhhcCCCCCCCCCeeEEEEcCCc--chHHHHhHhcCCCeEEEcchhHHHHHHHHhhHHHHh
Q 044218 90 LEAVFTKMEAPFE--ELLDRLLLDDDEQPAAAVTAIIADTYL--PWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLER 165 (436)
Q Consensus 90 ~~~~~~~~~~~~~--~ll~~~~~~~~~~~~~~~D~vI~D~~~--~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~ 165 (436)
+..........++ .++++. +||+||+...+ .++..+|+.+++|+++..... .+...+.-+...-.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~----------kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~-~~g~~nr~~~~~a~ 138 (352)
T PRK12446 70 IKDPFLVMKGVMDAYVRIRKL----------KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM-TPGLANKIALRFAS 138 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----------CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC-CccHHHHHHHHhhC
Confidence 3333232222222 344544 99999998755 457889999999998864432 22222211111111
Q ss_pred cCCCCCCCCCCCCcccccCCCCCCCCCCCCCcccccCCchHHHHHHHhhcccccceEEEEcc-hhhhhH-HHHHHHh-hc
Q 044218 166 NGHFPFDLSEKGDELVDCIPGLEPTKLADFPTIFHGAGRKILHAALQSASKVSKAQYLLLSS-VYKLEA-KTIDALK-EE 242 (436)
Q Consensus 166 ~~~~p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~-~~~~~~~-~~ 242 (436)
.....+ + .....++.. .+..... .+.. +...+. ...+.+. ++
T Consensus 139 ~v~~~f--~----~~~~~~~~~-k~~~tG~----------------------------Pvr~~~~~~~~~~~~~~~~l~~ 183 (352)
T PRK12446 139 KIFVTF--E----EAAKHLPKE-KVIYTGS----------------------------PVREEVLKGNREKGLAFLGFSR 183 (352)
T ss_pred EEEEEc--c----chhhhCCCC-CeEEECC----------------------------cCCcccccccchHHHHhcCCCC
Confidence 100000 0 000000000 0000000 0000 000000 0000000 11
Q ss_pred CCCCeEEecCCCCCCCCCcccCh-HHHHHHHHHHHhCCCeEEEEEcCCC-CcccccccCCCcEEeecc-ch-hhhccccC
Q 044218 243 FSFPVLLAQFCTSHWEAFYSVSS-AQMDEIIAGIRNSGVRYLWVTRGDT-SRFKDGHADDRGIVVPWC-DQ-LRVLCHAS 318 (436)
Q Consensus 243 ~~~~~~~vGpl~~~wGS~~~~~~-~~~~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~~~~~~v~~~~-pq-~~ll~~~~ 318 (436)
-.+.++.+| ||++.... +.+..++..+.. +++++|.+|.+. +..... ..+..+.+|+ ++ .++|.+++
T Consensus 184 ~~~~iLv~G------GS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~~~~~~~~--~~~~~~~~f~~~~m~~~~~~ad 254 (352)
T PRK12446 184 KKPVITIMG------GSLGAKKINETVREALPELLL-KYQIVHLCGKGNLDDSLQN--KEGYRQFEYVHGELPDILAITD 254 (352)
T ss_pred CCcEEEEEC------CccchHHHHHHHHHHHHhhcc-CcEEEEEeCCchHHHHHhh--cCCcEEecchhhhHHHHHHhCC
Confidence 234688899 99986333 234444444432 488899888753 111111 1355667887 54 45899999
Q ss_pred cceeeccCCcchHHHHHhcCCcEeecccc-----ccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 319 IGGFWTHCGLNSTIESLYAGVPMLTFPLF-----WDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 319 ~~~~I~hgG~~s~~eal~~GvP~l~~P~~-----~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
+ +|||||.+|+.|++++|+|+|++|+. .||..||..+++. |+|..+.. .+ +|++.|.+++.++++|
T Consensus 255 l--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~-g~~~~l~~-~~-----~~~~~l~~~l~~ll~~ 325 (352)
T PRK12446 255 F--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQ-GYASVLYE-ED-----VTVNSLIKHVEELSHN 325 (352)
T ss_pred E--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHC-CCEEEcch-hc-----CCHHHHHHHHHHHHcC
Confidence 9 99999999999999999999999984 4899999999987 99999987 33 7999999999999977
Q ss_pred CccchHHHHHHHHH
Q 044218 394 NSDERKEMSKRARE 407 (436)
Q Consensus 394 ~~~~~~~~~~~a~~ 407 (436)
+ +.|++++++
T Consensus 326 ~----~~~~~~~~~ 335 (352)
T PRK12446 326 N----EKYKTALKK 335 (352)
T ss_pred H----HHHHHHHHH
Confidence 2 355544433
No 29
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=4.3e-23 Score=194.14 Aligned_cols=307 Identities=17% Similarity=0.183 Sum_probs=190.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCc-EEEEEeccccccc--cCCCCCCCCeeEEecCCCCCCCCCCCCCHHHHH
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDI-LITFVVTEEWLGF--IGSQSKPHNIRFRTLPNTIPSEHGRANDFAGFL 90 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh-~Vt~~~~~~~~~~--~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~~ 90 (436)
++|++...++.||+.|.++|+++|.+ +|+ +|.++.+....+. .+.. ++.++.++.+-.... .... .+
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~--~g~~~v~~~~~~~~~e~~l~~~~----~~~~~~I~~~~~~~~---~~~~-~~ 70 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAK--RGWEQVIVLGTGDGLEAFLVKQY----GIEFELIPSGGLRRK---GSLK-LL 70 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHh--hCccEEEEecccccceeeecccc----CceEEEEeccccccc---CcHH-HH
Confidence 57899999999999999999999999 999 5888866554443 2333 788888874332211 1111 22
Q ss_pred HHHHHhchH--HHHHHHHHhhcCCCCCCCCCeeEEEEcCCc--chHHHHhHhcCCCeEEEcchhHHHHHHHHhhHHHHhc
Q 044218 91 EAVFTKMEA--PFEELLDRLLLDDDEQPAAAVTAIIADTYL--PWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERN 166 (436)
Q Consensus 91 ~~~~~~~~~--~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~--~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~~ 166 (436)
...+..+.. ..+.++++. +||+||+-+.+ .++..+|..+|||.++.- +...+...+..+...-..
T Consensus 71 ~~~~~~~~~~~~a~~il~~~----------kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihE-qn~~~G~ank~~~~~a~~ 139 (357)
T COG0707 71 KAPFKLLKGVLQARKILKKL----------KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHE-QNAVPGLANKILSKFAKK 139 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHc----------CCCEEEecCCccccHHHHHHHhCCCCEEEEe-cCCCcchhHHHhHHhhce
Confidence 222222222 234566666 99999987644 678889999999999953 332222222222111110
Q ss_pred CCCCCCCCCCCCcccccCCCCCCCCCCCCCcccccCCchHHHHHHHhhcccccceEE-EEcchhhhhHHHHHHHhhcCCC
Q 044218 167 GHFPFDLSEKGDELVDCIPGLEPTKLADFPTIFHGAGRKILHAALQSASKVSKAQYL-LLSSVYKLEAKTIDALKEEFSF 245 (436)
Q Consensus 167 ~~~p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 245 (436)
.. ...+......... .. ...+. +-+.+.+.......+....-.+
T Consensus 140 V~-------------~~f~~~~~~~~~~---------------------~~-~~tG~Pvr~~~~~~~~~~~~~~~~~~~~ 184 (357)
T COG0707 140 VA-------------SAFPKLEAGVKPE---------------------NV-VVTGIPVRPEFEELPAAEVRKDGRLDKK 184 (357)
T ss_pred ee-------------eccccccccCCCC---------------------ce-EEecCcccHHhhccchhhhhhhccCCCc
Confidence 00 0000000000000 00 00000 1111111111111111111245
Q ss_pred CeEEecCCCCCCCCCccc-ChHHHHHHHHHHHhCCCeEEEEEcCCC-CcccccccC-CC-cEEeeccchhh-hccccCcc
Q 044218 246 PVLLAQFCTSHWEAFYSV-SSAQMDEIIAGIRNSGVRYLWVTRGDT-SRFKDGHAD-DR-GIVVPWCDQLR-VLCHASIG 320 (436)
Q Consensus 246 ~~~~vGpl~~~wGS~~~~-~~~~~~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~~-~~-~~v~~~~pq~~-ll~~~~~~ 320 (436)
.++.+| ||++.. -++.+..++..+.+ ++.+++.+|.+. +..... .. .+ +.+.+|+.++. +|+.+++
T Consensus 185 ~ilV~G------GS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~~~~~~~~-~~~~~~~~v~~f~~dm~~~~~~ADL- 255 (357)
T COG0707 185 TILVTG------GSQGAKALNDLVPEALAKLAN-RIQVIHQTGKNDLEELKSA-YNELGVVRVLPFIDDMAALLAAADL- 255 (357)
T ss_pred EEEEEC------CcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcchHHHHHHH-HhhcCcEEEeeHHhhHHHHHHhccE-
Confidence 689999 999863 33445555555555 678888888764 122221 12 12 77889999876 9999999
Q ss_pred eeeccCCcchHHHHHhcCCcEeecccc----ccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 321 GFWTHCGLNSTIESLYAGVPMLTFPLF----WDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 321 ~~I~hgG~~s~~eal~~GvP~l~~P~~----~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
+||++|.+|+.|++++|+|+|.+|.. .||..||..++++ |.|..++. .+ +|.+++.+.|.+++++
T Consensus 256 -vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa~~i~~-~~-----lt~~~l~~~i~~l~~~ 324 (357)
T COG0707 256 -VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAALVIRQ-SE-----LTPEKLAELILRLLSN 324 (357)
T ss_pred -EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCEEEecc-cc-----CCHHHHHHHHHHHhcC
Confidence 99999999999999999999999983 3899999999999 99999998 44 8999999999999986
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.90 E-value=4.5e-22 Score=188.60 Aligned_cols=294 Identities=16% Similarity=0.221 Sum_probs=172.9
Q ss_pred cEEEEEcCC-CccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCCCCCCCCCHHHHHHH
Q 044218 14 CHVLALPYP-GRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPSEHGRANDFAGFLEA 92 (436)
Q Consensus 14 ~~vl~~~~~-~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~~~~ 92 (436)
|||+|...+ +.||+.++++||++| + ||+|+|++.....+.+... +.+..+++-.........+.......
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L-r---g~~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL-R---GHEVTFITSGPAPEFLKPR-----FPVREIPGLGPIQENGRLDRWKTVRN 71 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH-c---cCceEEEEcCCcHHHhccc-----cCEEEccCceEeccCCccchHHHHHH
Confidence 788888887 889999999999999 5 7999999988666555433 45555542211111111121111111
Q ss_pred H---HHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHHhhHHHHhcCCC
Q 044218 93 V---FTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERNGHF 169 (436)
Q Consensus 93 ~---~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (436)
. .......++++++.+.+. +||+||+| +.+.+..+|+..|||++.+........ + ....
T Consensus 72 ~~~~~~~~~~~~~~~~~~l~~~-------~pDlVIsD-~~~~~~~aa~~~giP~i~i~~~~~~~~------~----~~~~ 133 (318)
T PF13528_consen 72 NIRWLARLARRIRREIRWLREF-------RPDLVISD-FYPLAALAARRAGIPVIVISNQYWFLH------P----NFWL 133 (318)
T ss_pred HHHhhHHHHHHHHHHHHHHHhc-------CCCEEEEc-ChHHHHHHHHhcCCCEEEEEehHHccc------c----cCCc
Confidence 1 122334444555555444 99999999 455577899999999998765543210 0 0000
Q ss_pred CCCCCCCCCcccccCCCCCCCCCCCCCcccccCCchHHHHHHHhhcccccceEEEEcchh----------hhhHHHHHHH
Q 044218 170 PFDLSEKGDELVDCIPGLEPTKLADFPTIFHGAGRKILHAALQSASKVSKAQYLLLSSVY----------KLEAKTIDAL 239 (436)
Q Consensus 170 p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~l~~~~~~~~ 239 (436)
+.. .. ............ ....+...+.-++. -..+..-+..
T Consensus 134 ~~~--------------------~~--------~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~ 184 (318)
T PF13528_consen 134 PWD--------------------QD--------FGRLIERYIDRY-HFPPADRRLALSFYPPLPPFFRVPFVGPIIRPEI 184 (318)
T ss_pred chh--------------------hh--------HHHHHHHhhhhc-cCCcccceecCCccccccccccccccCchhcccc
Confidence 000 00 000000000000 00111111111111 0000000000
Q ss_pred h---hcCCC-CeEEecCCCCCCCCCcccChHHHHHHHHHHHhCC-CeEEEEEcCCCCcccccccCCCcEEeecc-c-hhh
Q 044218 240 K---EEFSF-PVLLAQFCTSHWEAFYSVSSAQMDEIIAGIRNSG-VRYLWVTRGDTSRFKDGHADDRGIVVPWC-D-QLR 312 (436)
Q Consensus 240 ~---~~~~~-~~~~vGpl~~~wGS~~~~~~~~~~~l~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~v~~~~-p-q~~ 312 (436)
. +.-.+ -++++| |. ... .++++++..+ +.+++. +... ... .++|+.+.++. + ..+
T Consensus 185 ~~~~~~~~~~iLv~~g------g~----~~~---~~~~~l~~~~~~~~~v~-g~~~--~~~--~~~ni~~~~~~~~~~~~ 246 (318)
T PF13528_consen 185 RELPPEDEPKILVYFG------GG----GPG---DLIEALKALPDYQFIVF-GPNA--ADP--RPGNIHVRPFSTPDFAE 246 (318)
T ss_pred cccCCCCCCEEEEEeC------CC----cHH---HHHHHHHhCCCCeEEEE-cCCc--ccc--cCCCEEEeecChHHHHH
Confidence 0 00011 134444 21 112 5667777776 677666 4432 122 26899999987 4 455
Q ss_pred hccccCcceeeccCCcchHHHHHhcCCcEeeccc--cccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHH
Q 044218 313 VLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPL--FWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRF 390 (436)
Q Consensus 313 ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~--~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~l 390 (436)
+|+.|++ +|+|||+||++|++++|+|+|++|. ..||..||+++++. |+|+.++. +. ++++.|++.|+++
T Consensus 247 ~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~-G~~~~~~~-~~-----~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 247 LMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEEL-GLGIVLSQ-ED-----LTPERLAEFLERL 317 (318)
T ss_pred HHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHC-CCeEEccc-cc-----CCHHHHHHHHhcC
Confidence 9988888 9999999999999999999999999 78999999999966 99999987 33 8999999999864
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.88 E-value=1.1e-20 Score=178.87 Aligned_cols=302 Identities=13% Similarity=0.126 Sum_probs=163.8
Q ss_pred EEEEEcCC-CccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCee-EEecCCCCCCCCCCCCCHHHHHHH
Q 044218 15 HVLALPYP-GRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIR-FRTLPNTIPSEHGRANDFAGFLEA 92 (436)
Q Consensus 15 ~vl~~~~~-~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~-~~~l~~~l~~~~~~~~~~~~~~~~ 92 (436)
||+|...+ +.||+.|.++|+++|++ ||+|+|+++......++.. ++. +..+|...........+....+..
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~---g~ev~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~l~~ 73 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN---DYEVSYIASGRSKNYISKY----GFKVFETFPGIKLKGEDGKVNIVKTLRN 73 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC---CCeEEEEEcCCHHHhhhhh----cCcceeccCCceEeecCCcCcHHHHHHh
Confidence 56776666 55999999999999975 9999999988755556655 444 333331100000000122212111
Q ss_pred HHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHH-HHhhH----HHHhcC
Q 044218 93 VFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSV-FHHFE----LLERNG 167 (436)
Q Consensus 93 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~-~~~~~----~~~~~~ 167 (436)
........+.+..+.+++. +||+||+| +.+.+..+|+.+|||++.+..+....... ..... ... ..
T Consensus 74 ~~~~~~~~~~~~~~~l~~~-------~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~~~~~~~~~~~~~~~~~-~~ 144 (321)
T TIGR00661 74 KEYSPKKAIRREINIIREY-------NPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTRYPLKTDLIVYPTMAAL-RI 144 (321)
T ss_pred hccccHHHHHHHHHHHHhc-------CCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhcCCcccchhHHHHHHHH-HH
Confidence 0011112333333433333 99999999 55666889999999999766543220000 00000 000 00
Q ss_pred CCCCCCCCCCCcccccCCCCCCCCCCCCCcccccCCchHHHHHHHhhcccccceEEEEcchhhhhHHHHHHHhhcCCCCe
Q 044218 168 HFPFDLSEKGDELVDCIPGLEPTKLADFPTIFHGAGRKILHAALQSASKVSKAQYLLLSSVYKLEAKTIDALKEEFSFPV 247 (436)
Q Consensus 168 ~~p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 247 (436)
..+. ... ...+... ......|.... .... +..... .....+...+.+
T Consensus 145 ~~~~-----~~~--~~~~~~~-~~~~~~p~~~~---------------~~~~---------~~~~~~-~~~~~~~~~~~i 191 (321)
T TIGR00661 145 FNER-----CER--FIVPDYP-FPYTICPKIIK---------------NMEG---------PLIRYD-VDDVDNYGEDYI 191 (321)
T ss_pred hccc-----cce--EeeecCC-CCCCCCccccc---------------cCCC---------cccchh-hhccccCCCCcE
Confidence 0000 000 0001000 00000000000 0000 000000 000011112334
Q ss_pred EEecCCCCCCCCCcccChHHHHHHHHHHHhCCC-eEEEEEcCCCCcccccccCCCcEEeeccc--hhhhccccCcceeec
Q 044218 248 LLAQFCTSHWEAFYSVSSAQMDEIIAGIRNSGV-RYLWVTRGDTSRFKDGHADDRGIVVPWCD--QLRVLCHASIGGFWT 324 (436)
Q Consensus 248 ~~vGpl~~~wGS~~~~~~~~~~~l~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~v~~~~p--q~~ll~~~~~~~~I~ 324 (436)
+..| |+.. ...+++++.+.+. .+++ +.. +...+. .++|+.+.+|.| ..++|..|++ +||
T Consensus 192 Lv~~------g~~~------~~~l~~~l~~~~~~~~i~--~~~-~~~~~~-~~~~v~~~~~~~~~~~~~l~~ad~--vI~ 253 (321)
T TIGR00661 192 LVYI------GFEY------RYKILELLGKIANVKFVC--YSY-EVAKNS-YNENVEIRRITTDNFKELIKNAEL--VIT 253 (321)
T ss_pred EEEC------CcCC------HHHHHHHHHhCCCeEEEE--eCC-CCCccc-cCCCEEEEECChHHHHHHHHhCCE--EEE
Confidence 4444 4433 2345677777653 4443 222 122233 478999999997 3457888888 999
Q ss_pred cCCcchHHHHHhcCCcEeeccccc--cchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 325 HCGLNSTIESLYAGVPMLTFPLFW--DQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 325 hgG~~s~~eal~~GvP~l~~P~~~--DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
|||++|++|++++|+|++++|... ||..||+.+++. |+|+.++. .. + ++.+++.+++++
T Consensus 254 ~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~-g~~~~l~~-~~-----~---~~~~~~~~~~~~ 314 (321)
T TIGR00661 254 HGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL-GCGIALEY-KE-----L---RLLEAILDIRNM 314 (321)
T ss_pred CCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC-CCEEEcCh-hh-----H---HHHHHHHhcccc
Confidence 999999999999999999999954 899999999977 99999887 32 2 666677777766
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.80 E-value=5.4e-17 Score=156.39 Aligned_cols=337 Identities=14% Similarity=0.079 Sum_probs=189.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccc--ccccCCCCCCCCeeEEecCCC-CCCCCCCCCCHHHH
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEW--LGFIGSQSKPHNIRFRTLPNT-IPSEHGRANDFAGF 89 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~--~~~~~~~~~~~~i~~~~l~~~-l~~~~~~~~~~~~~ 89 (436)
||||+|+..+..||...++.|+++|.+ +||+|++++.+.. .+..+.. +++++.++.. +. .......
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~--~g~ev~vv~~~~~~~~~~~~~~----g~~~~~~~~~~~~-----~~~~~~~ 69 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKK--RGWEVLYLGTARGMEARLVPKA----GIEFHFIPSGGLR-----RKGSLAN 69 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHh--CCCEEEEEECCCchhhhccccC----CCcEEEEeccCcC-----CCChHHH
Confidence 589999999999999999999999999 9999999988653 2223333 6777777521 11 1111111
Q ss_pred HHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCC--cchHHHHhHhcCCCeEEEcchhHHHHHHHHhhHHHHhcC
Q 044218 90 LEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTY--LPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERNG 167 (436)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~--~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~~~ 167 (436)
+..... ....+..+.+.+++. +||+|++... .+.+..+++..++|.+................. ....
T Consensus 70 l~~~~~-~~~~~~~~~~~ik~~-------~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~r~~~~--~~d~ 139 (357)
T PRK00726 70 LKAPFK-LLKGVLQARKILKRF-------KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAVPGLANKLLAR--FAKK 139 (357)
T ss_pred HHHHHH-HHHHHHHHHHHHHhc-------CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCCccHHHHHHHH--Hhch
Confidence 111111 122223333333333 8999999863 355666788899999875321110000000000 0000
Q ss_pred CCCCCCCCCCCcccccCCCCCCCCCCCCCcccccCCchHHHHHHHhhcccccceE-EEEcchhh--hhHHHHH-HHh-hc
Q 044218 168 HFPFDLSEKGDELVDCIPGLEPTKLADFPTIFHGAGRKILHAALQSASKVSKAQY-LLLSSVYK--LEAKTID-ALK-EE 242 (436)
Q Consensus 168 ~~p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--l~~~~~~-~~~-~~ 242 (436)
.. ...+. .+ .. .+.... ++.|.... +.+.... .+. ..
T Consensus 140 ii------------~~~~~-------------------~~---~~----~~~~~i~vi~n~v~~~~~~~~~~~~~~~~~~ 181 (357)
T PRK00726 140 VA------------TAFPG-------------------AF---PE----FFKPKAVVTGNPVREEILALAAPPARLAGRE 181 (357)
T ss_pred he------------ECchh-------------------hh---hc----cCCCCEEEECCCCChHhhcccchhhhccCCC
Confidence 00 00000 00 00 000000 11111100 0000000 000 00
Q ss_pred CCCCeEEecCCCCCCCCCcccChHHHHHHHHHHHhCCC--eEEEEEcCCC-Cccccc-ccCCCcEEeeccch-hhhcccc
Q 044218 243 FSFPVLLAQFCTSHWEAFYSVSSAQMDEIIAGIRNSGV--RYLWVTRGDT-SRFKDG-HADDRGIVVPWCDQ-LRVLCHA 317 (436)
Q Consensus 243 ~~~~~~~vGpl~~~wGS~~~~~~~~~~~l~~al~~~~~--~~i~~~~~~~-~~~~~~-~~~~~~~v~~~~pq-~~ll~~~ 317 (436)
-.+.+.++| |+... ......+.+++.+... ..++.+|... +.+.+. ...-++.+.+|+.+ .+++..+
T Consensus 182 ~~~~i~~~g------g~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 253 (357)
T PRK00726 182 GKPTLLVVG------GSQGA--RVLNEAVPEALALLPEALQVIHQTGKGDLEEVRAAYAAGINAEVVPFIDDMAAAYAAA 253 (357)
T ss_pred CCeEEEEEC------CcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCCcHHHHHHHhhcCCcEEEeehHhhHHHHHHhC
Confidence 122355666 55432 1112222244444332 4455666543 112111 01223778899854 5699999
Q ss_pred CcceeeccCCcchHHHHHhcCCcEeeccc----cccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 318 SIGGFWTHCGLNSTIESLYAGVPMLTFPL----FWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 318 ~~~~~I~hgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
++ +|+|+|.++++||+++|+|+|++|. ..||..|+..+.+. |.|+.++. .+ ++++.+.++|.+++++
T Consensus 254 d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g~~~~~-~~-----~~~~~l~~~i~~ll~~ 324 (357)
T PRK00726 254 DL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAALLIPQ-SD-----LTPEKLAEKLLELLSD 324 (357)
T ss_pred CE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCEEEEEc-cc-----CCHHHHHHHHHHHHcC
Confidence 99 9999999999999999999999997 46899999999987 99999987 33 6899999999999988
Q ss_pred CccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044218 394 NSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDIS 434 (436)
Q Consensus 394 ~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 434 (436)
+++++...+-+..+ .+.+++.+.++.+++.++
T Consensus 325 -----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 325 -----PERLEAMAEAARAL----GKPDAAERLADLIEELAR 356 (357)
T ss_pred -----HHHHHHHHHHHHhc----CCcCHHHHHHHHHHHHhh
Confidence 67765544443332 235666666666665543
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.71 E-value=9.1e-16 Score=147.44 Aligned_cols=303 Identities=14% Similarity=0.126 Sum_probs=168.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccccc--ccCCCCCCCCeeEEecCCC-CCCCCCCCCCHHHHHH
Q 044218 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLG--FIGSQSKPHNIRFRTLPNT-IPSEHGRANDFAGFLE 91 (436)
Q Consensus 15 ~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~--~~~~~~~~~~i~~~~l~~~-l~~~~~~~~~~~~~~~ 91 (436)
||++...++.||....+.|++.|.+ +||+|++++...... ..+.. ++++..++-. +. .......+.
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~--~G~ev~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~~ 69 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRE--RGAEVLFLGTKRGLEARLVPKA----GIPLHTIPVGGLR-----RKGSLKKLK 69 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHh--CCCEEEEEECCCcchhhccccc----CCceEEEEecCcC-----CCChHHHHH
Confidence 5889999999999999999999999 999999998754221 11222 5677666521 11 111111111
Q ss_pred HHHH--hchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCC--cchHHHHhHhcCCCeEEEcchhHHHHHHHHhhHHHHhcC
Q 044218 92 AVFT--KMEAPFEELLDRLLLDDDEQPAAAVTAIIADTY--LPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERNG 167 (436)
Q Consensus 92 ~~~~--~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~--~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~~~ 167 (436)
.... .....+..++++. +||+|++... ..++..+|...++|++....... .............
T Consensus 70 ~~~~~~~~~~~~~~~i~~~----------~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~~-~~~~~~~~~~~~~-- 136 (350)
T cd03785 70 APFKLLKGVLQARKILKKF----------KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNAV-PGLANRLLARFAD-- 136 (350)
T ss_pred HHHHHHHHHHHHHHHHHhc----------CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCCC-ccHHHHHHHHhhC--
Confidence 1111 1111233444443 8999998753 35567788999999987432111 0000000000000
Q ss_pred CCCCCCCCCCCcccccCCCCCCCCCCCCCcccccCCchHHHHHHHhhcccccce-EEEEcchh-hh-hHH-HHHHHh-hc
Q 044218 168 HFPFDLSEKGDELVDCIPGLEPTKLADFPTIFHGAGRKILHAALQSASKVSKAQ-YLLLSSVY-KL-EAK-TIDALK-EE 242 (436)
Q Consensus 168 ~~p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~l-~~~-~~~~~~-~~ 242 (436)
......+. ..+. ..... .++.|... .+ .+. ..+.+. +.
T Consensus 137 -----------~vi~~s~~-------------------~~~~-------~~~~~~~~i~n~v~~~~~~~~~~~~~~~~~~ 179 (350)
T cd03785 137 -----------RVALSFPE-------------------TAKY-------FPKDKAVVTGNPVREEILALDRERARLGLRP 179 (350)
T ss_pred -----------EEEEcchh-------------------hhhc-------CCCCcEEEECCCCchHHhhhhhhHHhcCCCC
Confidence 00000000 0000 00000 01111110 00 000 000000 10
Q ss_pred CCCCeEEecCCCCCCCCCcccC-hHHHHHHHHHHHhCCCeEEEEEcCCC-Cccccc--ccCCCcEEeeccc-hhhhcccc
Q 044218 243 FSFPVLLAQFCTSHWEAFYSVS-SAQMDEIIAGIRNSGVRYLWVTRGDT-SRFKDG--HADDRGIVVPWCD-QLRVLCHA 317 (436)
Q Consensus 243 ~~~~~~~vGpl~~~wGS~~~~~-~~~~~~l~~al~~~~~~~i~~~~~~~-~~~~~~--~~~~~~~v~~~~p-q~~ll~~~ 317 (436)
-.+.+..+| |+..... .+.+..++..+.+.+..+++.+|... +.+.+. ...+|+++.+|+. ...+|..+
T Consensus 180 ~~~~i~~~~------g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~a 253 (350)
T cd03785 180 GKPTLLVFG------GSQGARAINEAVPEALAELLRKRLQVIHQTGKGDLEEVKKAYEELGVNYEVFPFIDDMAAAYAAA 253 (350)
T ss_pred CCeEEEEEC------CcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCccHHHHHHHHhccCCCeEEeehhhhHHHHHHhc
Confidence 112245555 5544211 12233334444434555666666542 112211 0135899999984 45589888
Q ss_pred CcceeeccCCcchHHHHHhcCCcEeeccc----cccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 318 SIGGFWTHCGLNSTIESLYAGVPMLTFPL----FWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 318 ~~~~~I~hgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
++ +|+++|.+++.||+++|+|+|+.|. ..+|..|+..+.+. |.|+.++. . ..+.+++.++|++++++
T Consensus 254 d~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g~~v~~-~-----~~~~~~l~~~i~~ll~~ 324 (350)
T cd03785 254 DL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA-GAAVLIPQ-E-----ELTPERLAAALLELLSD 324 (350)
T ss_pred CE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-CCEEEEec-C-----CCCHHHHHHHHHHHhcC
Confidence 88 9999999999999999999999986 35788999999977 99999987 2 25899999999999987
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.68 E-value=2.6e-14 Score=137.26 Aligned_cols=309 Identities=14% Similarity=0.117 Sum_probs=166.7
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccccc--ccCCCCCCCCeeEEecCCCCCCCCCCCCCHHHHHH
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLG--FIGSQSKPHNIRFRTLPNTIPSEHGRANDFAGFLE 91 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~--~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~~~ 91 (436)
|||+|++.+..||+...+.|+++|.+ +||+|++++.+.... ..+.. +++++.++..-. ....+...+.
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~--~g~eV~vv~~~~~~~~~~~~~~----g~~~~~i~~~~~----~~~~~~~~l~ 70 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIK--RGVEVLWLGTKRGLEKRLVPKA----GIEFYFIPVGGL----RRKGSFRLIK 70 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHh--CCCEEEEEeCCCcchhcccccC----CCceEEEeccCc----CCCChHHHHH
Confidence 48999999999999988899999999 999999998754221 12223 677777652110 0112222222
Q ss_pred HHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCc--chHHHHhHhcCCCeEEEcchhHHHHHHHHhhHHHHhcCCC
Q 044218 92 AVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYL--PWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERNGHF 169 (436)
Q Consensus 92 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~--~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (436)
..... ...+..+.+.+++. +||+|++.... ..+..+++.+++|.+......... .........-..
T Consensus 71 ~~~~~-~~~~~~l~~~i~~~-------~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~-~~~~~~~~~~d~--- 138 (348)
T TIGR01133 71 TPLKL-LKAVFQARRILKKF-------KPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNAVPG-LTNKLLSRFAKK--- 138 (348)
T ss_pred HHHHH-HHHHHHHHHHHHhc-------CCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCCCcc-HHHHHHHHHhCe---
Confidence 21111 11222333333333 89999987533 445567888999998632211000 000000000000
Q ss_pred CCCCCCCCCcccccCCCCCCCCCCCCCcccccCCchHHHHHHHhhcccccceEEEEcchh-hh-hH--HHHHHHhhcCCC
Q 044218 170 PFDLSEKGDELVDCIPGLEPTKLADFPTIFHGAGRKILHAALQSASKVSKAQYLLLSSVY-KL-EA--KTIDALKEEFSF 245 (436)
Q Consensus 170 p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l-~~--~~~~~~~~~~~~ 245 (436)
.....+... +. +. ..++.|... .+ .+ ....+..++-.+
T Consensus 139 ----------ii~~~~~~~-----~~---~~--------------------~~~i~n~v~~~~~~~~~~~~~~~~~~~~~ 180 (348)
T TIGR01133 139 ----------VLISFPGAK-----DH---FE--------------------AVLVGNPVRQEIRSLPVPRERFGLREGKP 180 (348)
T ss_pred ----------eEECchhHh-----hc---CC--------------------ceEEcCCcCHHHhcccchhhhcCCCCCCe
Confidence 000000000 00 00 001111110 00 00 000000011123
Q ss_pred CeEEecCCCCCCCCCcccC-hHHHHHHHHHHHhCCCeEEEEEcCCC-CcccccccCC-C-cEEeecc--chhhhccccCc
Q 044218 246 PVLLAQFCTSHWEAFYSVS-SAQMDEIIAGIRNSGVRYLWVTRGDT-SRFKDGHADD-R-GIVVPWC--DQLRVLCHASI 319 (436)
Q Consensus 246 ~~~~vGpl~~~wGS~~~~~-~~~~~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~~~-~-~~v~~~~--pq~~ll~~~~~ 319 (436)
.+.++| |+.+... ...+...++.+.+.+..+++..++.. +.+... ..+ + ..++.|. ....+|..+++
T Consensus 181 ~i~~~g------g~~~~~~~~~~l~~a~~~l~~~~~~~~~~~g~~~~~~l~~~-~~~~~l~~~v~~~~~~~~~~l~~ad~ 253 (348)
T TIGR01133 181 TILVLG------GSQGAKILNELVPKALAKLAEKGIQIVHQTGKNDLEKVKNV-YQELGIEAIVTFIDENMAAAYAAADL 253 (348)
T ss_pred EEEEEC------CchhHHHHHHHHHHHHHHHhhcCcEEEEECCcchHHHHHHH-HhhCCceEEecCcccCHHHHHHhCCE
Confidence 467787 6655311 11122233344444566766555432 112111 111 1 1233344 34568999998
Q ss_pred ceeeccCCcchHHHHHhcCCcEeecccc---ccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCcc
Q 044218 320 GGFWTHCGLNSTIESLYAGVPMLTFPLF---WDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSD 396 (436)
Q Consensus 320 ~~~I~hgG~~s~~eal~~GvP~l~~P~~---~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~ 396 (436)
+|+++|.+++.||+++|+|+|+.|.. .+|..|+..+++. |.|..++. .+ .++++|.+++++++++
T Consensus 254 --~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~~G~~~~~-~~-----~~~~~l~~~i~~ll~~--- 321 (348)
T TIGR01133 254 --VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-GAGLVIRQ-KE-----LLPEKLLEALLKLLLD--- 321 (348)
T ss_pred --EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-CCEEEEec-cc-----CCHHHHHHHHHHHHcC---
Confidence 99999988999999999999999873 4688899999876 99998876 22 5799999999999987
Q ss_pred chHHHHH
Q 044218 397 ERKEMSK 403 (436)
Q Consensus 397 ~~~~~~~ 403 (436)
++.++
T Consensus 322 --~~~~~ 326 (348)
T TIGR01133 322 --PANLE 326 (348)
T ss_pred --HHHHH
Confidence 55544
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.64 E-value=7.4e-15 Score=142.06 Aligned_cols=105 Identities=17% Similarity=0.135 Sum_probs=78.6
Q ss_pred hhhccccCcceeeccCCcchHHHHHhcCCcEeec----cccc---------cchhhHHHHhhhhceeeEeecCCccccCc
Q 044218 311 LRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTF----PLFW---------DQVPNSKQIVQDWKTGWRVKKPEIASERL 377 (436)
Q Consensus 311 ~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~----P~~~---------DQ~~na~~~~~~lG~G~~~~~~~~~~~~~ 377 (436)
..+|..+++ +|+-+|..|+ |++++|+|+|++ |+.. +|..|+..+... ++...+.. ++
T Consensus 262 ~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~-~~~pel~q-~~----- 331 (385)
T TIGR00215 262 RKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANR-LLVPELLQ-EE----- 331 (385)
T ss_pred HHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCC-ccchhhcC-CC-----
Confidence 458888888 9999999888 999999999999 8742 378899999977 88877775 33
Q ss_pred cCHHHHHHHHHHHhccCccchH----HHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 044218 378 VTRDEITELVKRFMDLNSDERK----EMSKRAREVQEICREAAAENGSSITNLDAFL 430 (436)
Q Consensus 378 ~t~~~l~~~i~~ll~~~~~~~~----~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~ 430 (436)
+|++.|.+.+.++|+| + +++++..+--..+++...++|.+.+..+.++
T Consensus 332 ~~~~~l~~~~~~ll~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~ 383 (385)
T TIGR00215 332 CTPHPLAIALLLLLEN-----GLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVL 383 (385)
T ss_pred CCHHHHHHHHHHHhcC-----CcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 7999999999999988 5 4444444444444444445666665554443
No 36
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.63 E-value=3.3e-14 Score=127.97 Aligned_cols=315 Identities=15% Similarity=0.134 Sum_probs=179.2
Q ss_pred CCCCcEEEEEcCC--CccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCCC--CCCCCC
Q 044218 10 PTSLCHVLALPYP--GRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPSE--HGRAND 85 (436)
Q Consensus 10 ~~~~~~vl~~~~~--~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~--~~~~~~ 85 (436)
..+++||+|.+-- +.||+.+++.||..|+++.+|.+|++++......-+.- +.+++|+.+|.-.... +....+
T Consensus 6 ~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~---~~gVd~V~LPsl~k~~~G~~~~~d 82 (400)
T COG4671 6 ASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG---PAGVDFVKLPSLIKGDNGEYGLVD 82 (400)
T ss_pred hhccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC---cccCceEecCceEecCCCceeeee
Confidence 4456799999985 77999999999999999666999999998755543332 2389999999322111 111111
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHHhhHHHHh
Q 044218 86 FAGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLER 165 (436)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~ 165 (436)
...-...+.+.-...+...++.+ +||++|+|.+-+ |. .-|. ...+..+..
T Consensus 83 ~~~~l~e~~~~Rs~lil~t~~~f----------kPDi~IVd~~P~-Gl-r~EL------------------~ptL~yl~~ 132 (400)
T COG4671 83 LDGDLEETKKLRSQLILSTAETF----------KPDIFIVDKFPF-GL-RFEL------------------LPTLEYLKT 132 (400)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhc----------CCCEEEEecccc-ch-hhhh------------------hHHHHHHhh
Confidence 11113333333333344444554 999999995433 31 1111 001111111
Q ss_pred cCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccc-----CCchHHHHHHHhhcccccceEEEEcchhhhhHHH--HHH
Q 044218 166 NGHFPFDLSEKGDELVDCIPGLEPTKLADFPTIFHG-----AGRKILHAALQSASKVSKAQYLLLSSVYKLEAKT--IDA 238 (436)
Q Consensus 166 ~~~~p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~ 238 (436)
.+..+ .+..+++.+.... ..........+. .+.+++...+.+-.+. +++
T Consensus 133 ~~t~~------------------vL~lr~i~D~p~~~~~~w~~~~~~~~I~r~------yD~V~v~GdP~f~d~~~~~~~ 188 (400)
T COG4671 133 TGTRL------------------VLGLRSIRDIPQELEADWRRAETVRLINRF------YDLVLVYGDPDFYDPLTEFPF 188 (400)
T ss_pred cCCcc------------------eeehHhhhhchhhhccchhhhHHHHHHHHh------heEEEEecCccccChhhcCCc
Confidence 11000 0111222222221 111111112221 2223332222221100 001
Q ss_pred HhhcCCCCeEEecCC------C---CCC--------CCCcc--cChHHHHHHHHHHHh-CCCe--EEEEEcCC-CC----
Q 044218 239 LKEEFSFPVLLAQFC------T---SHW--------EAFYS--VSSAQMDEIIAGIRN-SGVR--YLWVTRGD-TS---- 291 (436)
Q Consensus 239 ~~~~~~~~~~~vGpl------~---~~w--------GS~~~--~~~~~~~~l~~al~~-~~~~--~i~~~~~~-~~---- 291 (436)
... ....+.|+|-+ . ..| .|.+. ...+.+...++|-.- .+.+ .++++|.. ++
T Consensus 189 ~~~-i~~k~~ytG~vq~~~~~~~~p~~~~pE~~~Ilvs~GGG~dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~ 267 (400)
T COG4671 189 APA-IRAKMRYTGFVQRSLPHLPLPPHEAPEGFDILVSVGGGADGAELIETALAAAQLLAGLNHKWLIVTGPFMPEAQRQ 267 (400)
T ss_pred cHh-hhhheeEeEEeeccCcCCCCCCcCCCccceEEEecCCChhhHHHHHHHHHHhhhCCCCCcceEEEeCCCCCHHHHH
Confidence 111 23356666644 1 112 33332 344555555544433 3444 55666652 21
Q ss_pred cccccccC--CCcEEeeccchhh-hccccCcceeeccCCcchHHHHHhcCCcEeecccc---ccchhhHHHHhhhhceee
Q 044218 292 RFKDGHAD--DRGIVVPWCDQLR-VLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLF---WDQVPNSKQIVQDWKTGW 365 (436)
Q Consensus 292 ~~~~~~~~--~~~~v~~~~pq~~-ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~---~DQ~~na~~~~~~lG~G~ 365 (436)
.+... .+ +++.|..|..+.. ++..++. +|+-||+||++|-|.+|+|.+++|.. .+|-.-|.|++ .||+.-
T Consensus 268 ~l~~~-A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~-~LGL~d 343 (400)
T COG4671 268 KLLAS-APKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLE-ELGLVD 343 (400)
T ss_pred HHHHh-cccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHH-hcCcce
Confidence 12222 23 6889999988765 9988888 99999999999999999999999985 49999999999 459988
Q ss_pred EeecCCccccCccCHHHHHHHHHHHhc
Q 044218 366 RVKKPEIASERLVTRDEITELVKRFMD 392 (436)
Q Consensus 366 ~~~~~~~~~~~~~t~~~l~~~i~~ll~ 392 (436)
.+.+ +. +|++.+.++|...++
T Consensus 344 vL~p-e~-----lt~~~La~al~~~l~ 364 (400)
T COG4671 344 VLLP-EN-----LTPQNLADALKAALA 364 (400)
T ss_pred eeCc-cc-----CChHHHHHHHHhccc
Confidence 8887 33 799999999999887
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.61 E-value=7.3e-14 Score=128.94 Aligned_cols=87 Identities=18% Similarity=0.209 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhC--CCeEEEEEcCCCCc---cccc-ccCCCcEEeeccchh-hhccccCcceeeccCCcchHHHHHhcCC
Q 044218 267 QMDEIIAGIRNS--GVRYLWVTRGDTSR---FKDG-HADDRGIVVPWCDQL-RVLCHASIGGFWTHCGLNSTIESLYAGV 339 (436)
Q Consensus 267 ~~~~l~~al~~~--~~~~i~~~~~~~~~---~~~~-~~~~~~~v~~~~pq~-~ll~~~~~~~~I~hgG~~s~~eal~~Gv 339 (436)
....+++++.+. +.++.+++|..... +.+. ....|+++..+++++ .+|..+++ +|++|| +|++|++++|+
T Consensus 185 ~~~~~l~~l~~~~~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl--~Is~~G-~T~~E~~a~g~ 261 (279)
T TIGR03590 185 LTLKLLSALAESQINISITLVTGSSNPNLDELKKFAKEYPNIILFIDVENMAELMNEADL--AIGAAG-STSWERCCLGL 261 (279)
T ss_pred HHHHHHHHHhccccCceEEEEECCCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCE--EEECCc-hHHHHHHHcCC
Confidence 344556666554 46777777764311 1111 014589999999987 59999999 999999 99999999999
Q ss_pred cEeeccccccchhhHHH
Q 044218 340 PMLTFPLFWDQVPNSKQ 356 (436)
Q Consensus 340 P~l~~P~~~DQ~~na~~ 356 (436)
|+|++|...+|..||+.
T Consensus 262 P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 262 PSLAICLAENQQSNSQQ 278 (279)
T ss_pred CEEEEEecccHHHHhhh
Confidence 99999999999999975
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.60 E-value=9.3e-13 Score=128.00 Aligned_cols=156 Identities=12% Similarity=0.156 Sum_probs=104.7
Q ss_pred eEEecCCCCCCCCCcccChHHHHHHHHHHHhC-CCeEEEEEcCCC---Cccc---ccccCCCcEEeeccchh-hhccccC
Q 044218 247 VLLAQFCTSHWEAFYSVSSAQMDEIIAGIRNS-GVRYLWVTRGDT---SRFK---DGHADDRGIVVPWCDQL-RVLCHAS 318 (436)
Q Consensus 247 ~~~vGpl~~~wGS~~~~~~~~~~~l~~al~~~-~~~~i~~~~~~~---~~~~---~~~~~~~~~v~~~~pq~-~ll~~~~ 318 (436)
++.+| |+.+.. ..+..+++++.+. ++++++..+.+. +.+. .. .++|+++.+|+++. .++..++
T Consensus 205 il~~~------G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~~~~~l~~~~~~-~~~~v~~~g~~~~~~~l~~~aD 275 (380)
T PRK13609 205 LLIMA------GAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEALKQSLEDLQET-NPDALKVFGYVENIDELFRVTS 275 (380)
T ss_pred EEEEc------CCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHHHHHHHHHHHhc-CCCcEEEEechhhHHHHHHhcc
Confidence 55566 666532 2345566666554 567777766432 1111 12 24689999999875 5999999
Q ss_pred cceeeccCCcchHHHHHhcCCcEeec-cccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccc
Q 044218 319 IGGFWTHCGLNSTIESLYAGVPMLTF-PLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDE 397 (436)
Q Consensus 319 ~~~~I~hgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~ 397 (436)
+ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+++. |.|+.. . +.+++.++|.+++++
T Consensus 276 ~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~-~---------~~~~l~~~i~~ll~~---- 338 (380)
T PRK13609 276 C--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI-R---------DDEEVFAKTEALLQD---- 338 (380)
T ss_pred E--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE-C---------CHHHHHHHHHHHHCC----
Confidence 8 99999988999999999999985 6667788899999877 888643 2 779999999999987
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 044218 398 RKEMSKRAREVQEICREAAAENGSSITNLDAFLKDI 433 (436)
Q Consensus 398 ~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 433 (436)
++.+++ +++..++ .....++...++.+++.+
T Consensus 339 -~~~~~~---m~~~~~~-~~~~~s~~~i~~~i~~~~ 369 (380)
T PRK13609 339 -DMKLLQ---MKEAMKS-LYLPEPADHIVDDILAEN 369 (380)
T ss_pred -HHHHHH---HHHHHHH-hCCCchHHHHHHHHHHhh
Confidence 554433 3333332 122344444444444443
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.49 E-value=1e-12 Score=127.77 Aligned_cols=108 Identities=11% Similarity=0.007 Sum_probs=65.3
Q ss_pred hhhccccCcceeeccCCcchHHHHHhcCCcEeeccccc--------cchhh-----HHHHhhhhceeeEeecCCccccCc
Q 044218 311 LRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFW--------DQVPN-----SKQIVQDWKTGWRVKKPEIASERL 377 (436)
Q Consensus 311 ~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~--------DQ~~n-----a~~~~~~lG~G~~~~~~~~~~~~~ 377 (436)
..++..+++ +|+.+|.+++ |++++|+|+|+.|-.. .|..| +..+.+. +++..+.. ..
T Consensus 256 ~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~------~~ 325 (380)
T PRK00025 256 REAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGR-ELVPELLQ------EE 325 (380)
T ss_pred HHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCC-CcchhhcC------CC
Confidence 458888999 9999998887 9999999999885321 22222 2223322 22322332 22
Q ss_pred cCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044218 378 VTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDIS 434 (436)
Q Consensus 378 ~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 434 (436)
.+++++.+.+.++++| ++.++...+-.+.+.+.. ..|.+...++.+.+.+.
T Consensus 326 ~~~~~l~~~i~~ll~~-----~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 326 ATPEKLARALLPLLAD-----GARRQALLEGFTELHQQL-RCGADERAAQAVLELLK 376 (380)
T ss_pred CCHHHHHHHHHHHhcC-----HHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhh
Confidence 6899999999999988 555543333332233322 24555555555544443
No 40
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.45 E-value=1.5e-14 Score=123.38 Aligned_cols=105 Identities=17% Similarity=0.301 Sum_probs=82.6
Q ss_pred CCeEEEEEcCCCCc-cc---ccccCCCcEEeeccc-hhhhccccCcceeeccCCcchHHHHHhcCCcEeeccccc----c
Q 044218 279 GVRYLWVTRGDTSR-FK---DGHADDRGIVVPWCD-QLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFW----D 349 (436)
Q Consensus 279 ~~~~i~~~~~~~~~-~~---~~~~~~~~~v~~~~p-q~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~----D 349 (436)
.+++++.+|..... .. .. ...++.+.+|++ ...++..+++ +|||||.||++|++++|+|+|++|... +
T Consensus 31 ~~~viv~~G~~~~~~~~~~~~~-~~~~v~~~~~~~~m~~~m~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~ 107 (167)
T PF04101_consen 31 NIQVIVQTGKNNYEELKIKVEN-FNPNVKVFGFVDNMAELMAAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNH 107 (167)
T ss_dssp HCCCCCCCTTCECHHHCCCHCC-TTCCCEEECSSSSHHHHHHHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-C
T ss_pred CcEEEEEECCCcHHHHHHHHhc-cCCcEEEEechhhHHHHHHHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHH
Confidence 57788888875311 11 11 125799999999 5569999999 999999999999999999999999988 9
Q ss_pred chhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 350 QVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 350 Q~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
|..||..+++. |.|+.+.. .. .+.++|.++|.+++++
T Consensus 108 q~~na~~~~~~-g~~~~~~~-~~-----~~~~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 108 QEENAKELAKK-GAAIMLDE-SE-----LNPEELAEAIEELLSD 144 (167)
T ss_dssp HHHHHHHHHHC-CCCCCSEC-CC------SCCCHHHHHHCHCCC
T ss_pred HHHHHHHHHHc-CCccccCc-cc-----CCHHHHHHHHHHHHcC
Confidence 99999999988 99999987 33 6799999999999987
No 41
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.45 E-value=8.6e-11 Score=114.39 Aligned_cols=152 Identities=14% Similarity=0.186 Sum_probs=100.7
Q ss_pred CCCcccChHHHHHHHHHH-Hh-CCCeEEEEEcCCC---Cccccc-ccCCCcEEeeccchhh-hccccCcceeeccCCcch
Q 044218 258 EAFYSVSSAQMDEIIAGI-RN-SGVRYLWVTRGDT---SRFKDG-HADDRGIVVPWCDQLR-VLCHASIGGFWTHCGLNS 330 (436)
Q Consensus 258 GS~~~~~~~~~~~l~~al-~~-~~~~~i~~~~~~~---~~~~~~-~~~~~~~v~~~~pq~~-ll~~~~~~~~I~hgG~~s 330 (436)
|+++. ...+..+++++ +. .+.++++.+|.+. +.+.+. ...+++.+.+|+.+.. ++..+++ +|+..|..|
T Consensus 210 G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aDl--~I~k~gg~t 285 (391)
T PRK13608 210 GAFGV--SKGFDTMITDILAKSANAQVVMICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWMASSQL--MITKPGGIT 285 (391)
T ss_pred CCccc--chhHHHHHHHHHhcCCCceEEEEcCCCHHHHHHHHHHhccCCCeEEEeccchHHHHHHhhhE--EEeCCchHH
Confidence 67662 12344444443 22 2467777766542 112211 0135788889997654 9999999 999998889
Q ss_pred HHHHHhcCCcEeec-cccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHH
Q 044218 331 TIESLYAGVPMLTF-PLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQ 409 (436)
Q Consensus 331 ~~eal~~GvP~l~~-P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~ 409 (436)
+.||+++|+|+|+. |...+|..|+..+++. |+|+... +.+++.++|.+++++ ++.+ ++++
T Consensus 286 l~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~----------~~~~l~~~i~~ll~~-----~~~~---~~m~ 346 (391)
T PRK13608 286 ISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD----------TPEEAIKIVASLTNG-----NEQL---TNMI 346 (391)
T ss_pred HHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC----------CHHHHHHHHHHHhcC-----HHHH---HHHH
Confidence 99999999999998 7767778999999988 9997532 788899999999987 4332 3444
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHH
Q 044218 410 EICREAAAENGSSITNLDAFLKDI 433 (436)
Q Consensus 410 ~~~~~a~~~~g~~~~~~~~~~~~~ 433 (436)
+.+++. ....+..+..+.+++.+
T Consensus 347 ~~~~~~-~~~~s~~~i~~~l~~l~ 369 (391)
T PRK13608 347 STMEQD-KIKYATQTICRDLLDLI 369 (391)
T ss_pred HHHHHh-cCCCCHHHHHHHHHHHh
Confidence 444432 22344444455554443
No 42
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.44 E-value=7.2e-12 Score=121.38 Aligned_cols=130 Identities=8% Similarity=0.024 Sum_probs=86.3
Q ss_pred CeEEecCCCCCCCCCcccChHHHHHHHHHHHhC----CCeEEEEEcCCC--Cccccc----cc--------------CCC
Q 044218 246 PVLLAQFCTSHWEAFYSVSSAQMDEIIAGIRNS----GVRYLWVTRGDT--SRFKDG----HA--------------DDR 301 (436)
Q Consensus 246 ~~~~vGpl~~~wGS~~~~~~~~~~~l~~al~~~----~~~~i~~~~~~~--~~~~~~----~~--------------~~~ 301 (436)
.+..+| ||.+......+..++++++.+ +..|++.+.++. +.+... .. .++
T Consensus 207 ~lllLp------GSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 280 (396)
T TIGR03492 207 RIALLP------GSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGT 280 (396)
T ss_pred EEEEEC------CCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCc
Confidence 355566 888643233344555555543 577888874432 111110 00 123
Q ss_pred cEEeeccch-hhhccccCcceeeccCCcchHHHHHhcCCcEeeccccccchhhHHHHhhh---hceeeEeecCCccccCc
Q 044218 302 GIVVPWCDQ-LRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQD---WKTGWRVKKPEIASERL 377 (436)
Q Consensus 302 ~~v~~~~pq-~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~---lG~G~~~~~~~~~~~~~ 377 (436)
+.+..+..+ ..++..+++ +|+.+|..| .|++.+|+|+|++|....|. |+...++. .|.++.+..
T Consensus 281 ~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~~-------- 348 (396)
T TIGR03492 281 LEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLAS-------- 348 (396)
T ss_pred eEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecCC--------
Confidence 566566554 448999999 999999866 99999999999999876776 98877643 255666554
Q ss_pred cCHHHHHHHHHHHhcc
Q 044218 378 VTRDEITELVKRFMDL 393 (436)
Q Consensus 378 ~t~~~l~~~i~~ll~~ 393 (436)
.+.+.|.+++.++++|
T Consensus 349 ~~~~~l~~~l~~ll~d 364 (396)
T TIGR03492 349 KNPEQAAQVVRQLLAD 364 (396)
T ss_pred CCHHHHHHHHHHHHcC
Confidence 3669999999999987
No 43
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.40 E-value=5.2e-14 Score=116.28 Aligned_cols=125 Identities=15% Similarity=0.175 Sum_probs=80.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCCCCCCCCCHHHHHHHH--
Q 044218 16 VLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPSEHGRANDFAGFLEAV-- 93 (436)
Q Consensus 16 vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~~~~~-- 93 (436)
|+|++.|+.||++|+++||++|++ +||+|++++++.+.+.+++. |++|.+++... ...............
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~--rGh~V~~~~~~~~~~~v~~~----Gl~~~~~~~~~--~~~~~~~~~~~~~~~~~ 72 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRR--RGHEVRLATPPDFRERVEAA----GLEFVPIPGDS--RLPRSLEPLANLRRLAR 72 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHH--TT-EEEEEETGGGHHHHHHT----T-EEEESSSCG--GGGHHHHHHHHHHCHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhc--cCCeEEEeecccceeccccc----CceEEEecCCc--CcCcccchhhhhhhHHH
Confidence 789999999999999999999999 99999999999999999999 99999998550 000000011111111
Q ss_pred ----HHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchh
Q 044218 94 ----FTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMS 150 (436)
Q Consensus 94 ----~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~ 150 (436)
.......+.+...+.....+... ..|+++.+.....+..+||++|||++.....+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p 131 (139)
T PF03033_consen 73 LIRGLEEAMRILARFRPDLVVAAGGYV--ADDVIIAAPLAFAAALVAEQLGIPGVANRLFP 131 (139)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCHCTTTT--ECCEECHHHHHTHHHHHHHHHTS-EEEEESSG
T ss_pred HhhhhhHHHHHhhccCcchhhhccCcc--cchHHHhhhhcCccceeEhhhCchHHHHhhCC
Confidence 11111122221111110000012 57888888888889999999999999976544
No 44
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.36 E-value=2.5e-10 Score=110.86 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=78.7
Q ss_pred CCeEEEEEcCCCC---cccccccCCCcEEeeccchhh-hccccCcceeeccCCcchHHHHHhcCCcEeeccccccch-hh
Q 044218 279 GVRYLWVTRGDTS---RFKDGHADDRGIVVPWCDQLR-VLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQV-PN 353 (436)
Q Consensus 279 ~~~~i~~~~~~~~---~~~~~~~~~~~~v~~~~pq~~-ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~-~n 353 (436)
+.++++.+|.+.. .+.......++++.+|+++.. ++..+++ +|+.+|.+|+.||+++|+|+|+.+....|. .|
T Consensus 241 ~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn 318 (382)
T PLN02605 241 IGQVVVICGRNKKLQSKLESRDWKIPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGN 318 (382)
T ss_pred CceEEEEECCCHHHHHHHHhhcccCCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhh
Confidence 3566777765421 111110134688889999755 9999999 999999999999999999999998766665 69
Q ss_pred HHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 354 SKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 354 a~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
+..+.+. |.|+.. . +++.+.++|.+++++
T Consensus 319 ~~~i~~~-g~g~~~-~---------~~~~la~~i~~ll~~ 347 (382)
T PLN02605 319 VPYVVDN-GFGAFS-E---------SPKEIARIVAEWFGD 347 (382)
T ss_pred HHHHHhC-Cceeec-C---------CHHHHHHHHHHHHcC
Confidence 9989877 998754 3 889999999999976
No 45
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.25 E-value=5.7e-09 Score=99.88 Aligned_cols=113 Identities=13% Similarity=0.111 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCccccc--ccCCCcEEeeccchhh---hccccCcceeec----cCC-cchHHHHH
Q 044218 266 AQMDEIIAGIRNSGVRYLWVTRGDTSRFKDG--HADDRGIVVPWCDQLR---VLCHASIGGFWT----HCG-LNSTIESL 335 (436)
Q Consensus 266 ~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~--~~~~~~~v~~~~pq~~---ll~~~~~~~~I~----hgG-~~s~~eal 335 (436)
+.+..+++.+.+.++.+++...+........ ...+++.+.+++++.+ ++..+++ +|. ..| ..++.||+
T Consensus 207 ~~li~~~~~l~~~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~ 284 (359)
T cd03823 207 DLLLEAFKRLPRGDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREAL 284 (359)
T ss_pred HHHHHHHHHHHhcCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHH
Confidence 3333344444333566665543332111110 0246889999997544 6888888 773 233 34789999
Q ss_pred hcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 336 YAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 336 ~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
++|+|+|+.+. ..+...+.+. +.|..++. -+.+++.+++.+++++
T Consensus 285 a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~--------~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 285 AAGVPVIASDI----GGMAELVRDG-VNGLLFPP--------GDAEDLAAALERLIDD 329 (359)
T ss_pred HCCCCEEECCC----CCHHHHhcCC-CcEEEECC--------CCHHHHHHHHHHHHhC
Confidence 99999998654 4466666644 57888876 3689999999999987
No 46
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.22 E-value=2.3e-08 Score=95.96 Aligned_cols=142 Identities=16% Similarity=0.172 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhC-CCeEEEEEcCCCC-cccccccCCCcEEeeccchhh---hccccCcceeeccCC----cchHHHHHh
Q 044218 266 AQMDEIIAGIRNS-GVRYLWVTRGDTS-RFKDGHADDRGIVVPWCDQLR---VLCHASIGGFWTHCG----LNSTIESLY 336 (436)
Q Consensus 266 ~~~~~l~~al~~~-~~~~i~~~~~~~~-~~~~~~~~~~~~v~~~~pq~~---ll~~~~~~~~I~hgG----~~s~~eal~ 336 (436)
+.+..+++.+.+. ++.+++...+... .+. . ..+|+.+.+|+++.+ ++..+++ +|..+. .+++.||++
T Consensus 213 ~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~~-~-~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a 288 (364)
T cd03814 213 EALLDADLPLRRRPPVRLVIVGDGPARARLE-A-RYPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMA 288 (364)
T ss_pred HHHHHHHHHhhhcCCceEEEEeCCchHHHHh-c-cCCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHH
Confidence 3344444444432 4555555443221 122 2 367899999998654 7888888 886654 468999999
Q ss_pred cCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHH
Q 044218 337 AGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAA 416 (436)
Q Consensus 337 ~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~ 416 (436)
+|+|+|+.+..+ +...+++. +.|...+. -+.+++.++|.+++++ ++.+++.. +..++.+
T Consensus 289 ~g~PvI~~~~~~----~~~~i~~~-~~g~~~~~--------~~~~~l~~~i~~l~~~-----~~~~~~~~---~~~~~~~ 347 (364)
T cd03814 289 SGLPVVAPDAGG----PADIVTDG-ENGLLVEP--------GDAEAFAAALAALLAD-----PELRRRMA---ARARAEA 347 (364)
T ss_pred cCCCEEEcCCCC----chhhhcCC-cceEEcCC--------CCHHHHHHHHHHHHcC-----HHHHHHHH---HHHHHHH
Confidence 999999887543 55666655 88887776 4788899999999987 44443322 2222221
Q ss_pred hcCCChHHHHHHHHHHH
Q 044218 417 AENGSSITNLDAFLKDI 433 (436)
Q Consensus 417 ~~~g~~~~~~~~~~~~~ 433 (436)
+..+..+..+++++.+
T Consensus 348 -~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 348 -ERRSWEAFLDNLLEAY 363 (364)
T ss_pred -hhcCHHHHHHHHHHhh
Confidence 2456666677766654
No 47
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.21 E-value=2.3e-09 Score=94.23 Aligned_cols=285 Identities=14% Similarity=0.097 Sum_probs=167.9
Q ss_pred cEEEEEcCC----CccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCCCCCCCCCHHHH
Q 044218 14 CHVLALPYP----GRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPSEHGRANDFAGF 89 (436)
Q Consensus 14 ~~vl~~~~~----~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~ 89 (436)
|||+|.+-+ +.||+.+++.||++|.+ +|..++|++.....+.+.+... ++.+. .. +..
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k--~~~~~~fl~k~~~e~~~~~~~~--~f~~~--------~~-~~~----- 62 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEK--RGFACLFLTKQDIEAIIHKVYE--GFKVL--------EG-RGN----- 62 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHh--cCceEEEecccchhhhhhhhhh--hccce--------ee-ecc-----
Confidence 688888876 67999999999999999 9999999998876654433200 11100 00 000
Q ss_pred HHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHH---HHhHhcCCCeEEEcchhHHHHH-----HHHhhH
Q 044218 90 LEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVV---DVGNRRNIPVASLWTMSALVFS-----VFHHFE 161 (436)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~---~~A~~~gIP~v~~~~~~~~~~~-----~~~~~~ 161 (436)
..+++. ++|++|.|.+...+- .+..+.+.+.+++-.-....+. ++....
T Consensus 63 ----------------n~ik~~-------k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~d~d~ivN~~~~ 119 (318)
T COG3980 63 ----------------NLIKEE-------KFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFKDNDLIVNAILN 119 (318)
T ss_pred ----------------cccccc-------cCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchhhhHhhhhhhhc
Confidence 033444 999999999885543 4667889999997543322110 000000
Q ss_pred HHHhcCCCCCCCCCCCCcccccCCCCCCCCCCCCCcccccCCchHHHHHHHhhcccccceEEEE-cchhhhhHHHHHHHh
Q 044218 162 LLERNGHFPFDLSEKGDELVDCIPGLEPTKLADFPTIFHGAGRKILHAALQSASKVSKAQYLLL-SSVYKLEAKTIDALK 240 (436)
Q Consensus 162 ~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 240 (436)
..... ..+|.- .+-+...+..++ +.|..+-+. ...
T Consensus 120 a~~~y---------------~~v~~k--------------------------~~~~lGp~y~~lr~eF~~~r~~---~~~ 155 (318)
T COG3980 120 ANDYY---------------GLVPNK--------------------------TRYYLGPGYAPLRPEFYALREE---NTE 155 (318)
T ss_pred chhhc---------------cccCcc--------------------------eEEEecCCceeccHHHHHhHHH---Hhh
Confidence 00000 000000 000001111111 112211111 111
Q ss_pred hcCCCC-eEEecCCCCCCCCCcccChHHHHHHHHHHHhCCCeEEEEEcCCCCccc---cc-ccCCCcEEeeccchhh-hc
Q 044218 241 EEFSFP-VLLAQFCTSHWEAFYSVSSAQMDEIIAGIRNSGVRYLWVTRGDTSRFK---DG-HADDRGIVVPWCDQLR-VL 314 (436)
Q Consensus 241 ~~~~~~-~~~vGpl~~~wGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~---~~-~~~~~~~v~~~~pq~~-ll 314 (436)
. -..+ ++..| ||- +....-.+++.+...++.+-+++++....+. +. ...+|+.+......+. |+
T Consensus 156 r-~~r~ilI~lG------GsD---pk~lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~k~~~~~~~i~~~~~~~dma~LM 225 (318)
T COG3980 156 R-PKRDILITLG------GSD---PKNLTLKVLAELEQKNVNLHIVVGSSNPTLKNLRKRAEKYPNINLYIDTNDMAELM 225 (318)
T ss_pred c-chheEEEEcc------CCC---hhhhHHHHHHHhhccCeeEEEEecCCCcchhHHHHHHhhCCCeeeEecchhHHHHH
Confidence 1 1112 34445 432 3345566788888878777677775332221 11 0124666666666444 99
Q ss_pred cccCcceeeccCCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccC
Q 044218 315 CHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLN 394 (436)
Q Consensus 315 ~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~ 394 (436)
..|++ .|+-+|. |++|++..|+|.+++|+...|---|...+.. |+-..++. . ++.+.....+.++.+|
T Consensus 226 ke~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~l-g~~~~l~~-~------l~~~~~~~~~~~i~~d- 293 (318)
T COG3980 226 KEADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEAL-GIIKQLGY-H------LKDLAKDYEILQIQKD- 293 (318)
T ss_pred Hhcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhc-CchhhccC-C------CchHHHHHHHHHhhhC-
Confidence 99999 9998885 9999999999999999999999999999955 87766664 2 4666666677788877
Q ss_pred ccchHHHHHHHHHHH
Q 044218 395 SDERKEMSKRAREVQ 409 (436)
Q Consensus 395 ~~~~~~~~~~a~~l~ 409 (436)
...|++.-.-.
T Consensus 294 ----~~~rk~l~~~~ 304 (318)
T COG3980 294 ----YARRKNLSFGS 304 (318)
T ss_pred ----HHHhhhhhhcc
Confidence 56666544433
No 48
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.09 E-value=1e-07 Score=92.99 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=61.9
Q ss_pred CCCcEEeeccchhh---hccccCcceeecc----CCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCC
Q 044218 299 DDRGIVVPWCDQLR---VLCHASIGGFWTH----CGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPE 371 (436)
Q Consensus 299 ~~~~~v~~~~pq~~---ll~~~~~~~~I~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~ 371 (436)
.+++.+.+|+|+.+ ++..+++ ++.. +-..++.||+++|+|+|+.... .....+++. +.|...+.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~-~~g~~~~~-- 352 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDG-VTGLLVDP-- 352 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCC-CCeEEeCC--
Confidence 36789999999755 5888888 7743 2235899999999999986643 355667655 78988876
Q ss_pred ccccCccCHHHHHHHHHHHhcc
Q 044218 372 IASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 372 ~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
.+.+++.++|.+++++
T Consensus 353 ------~~~~~l~~~i~~l~~~ 368 (398)
T cd03800 353 ------RDPEALAAALRRLLTD 368 (398)
T ss_pred ------CCHHHHHHHHHHHHhC
Confidence 3799999999999987
No 49
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.01 E-value=4.5e-07 Score=86.39 Aligned_cols=114 Identities=16% Similarity=0.235 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHh--CCCeEEEEEcCCCCccc------ccccCCCcEEeeccchhh-hccccCcceeeccCC----cchH
Q 044218 265 SAQMDEIIAGIRN--SGVRYLWVTRGDTSRFK------DGHADDRGIVVPWCDQLR-VLCHASIGGFWTHCG----LNST 331 (436)
Q Consensus 265 ~~~~~~l~~al~~--~~~~~i~~~~~~~~~~~------~~~~~~~~~v~~~~pq~~-ll~~~~~~~~I~hgG----~~s~ 331 (436)
.+.+...++.+.+ .++++++..++...... .....+++.+.++..+.. ++..+++ +|.-.. .+++
T Consensus 203 ~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~ 280 (359)
T cd03808 203 IDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVL 280 (359)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHH
Confidence 3444444555543 34566555444322111 110235788888755544 8888888 775433 5689
Q ss_pred HHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 332 IESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 332 ~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
.||+++|+|+|+-+.. .+...+++. +.|..++. -+.+++.++|.+++.+
T Consensus 281 ~Ea~~~G~Pvi~s~~~----~~~~~i~~~-~~g~~~~~--------~~~~~~~~~i~~l~~~ 329 (359)
T cd03808 281 LEAMAMGRPVIATDVP----GCREAVIDG-VNGFLVPP--------GDAEALADAIERLIED 329 (359)
T ss_pred HHHHHcCCCEEEecCC----CchhhhhcC-cceEEECC--------CCHHHHHHHHHHHHhC
Confidence 9999999999986543 344555544 67877776 3789999999999887
No 50
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.00 E-value=4.7e-07 Score=90.44 Aligned_cols=111 Identities=15% Similarity=0.157 Sum_probs=73.5
Q ss_pred HHHHHHHHHhC-CCeEEEEEcCCC-CcccccccCCCcEEeeccchhh---hccccCcceeeccCC----cchHHHHHhcC
Q 044218 268 MDEIIAGIRNS-GVRYLWVTRGDT-SRFKDGHADDRGIVVPWCDQLR---VLCHASIGGFWTHCG----LNSTIESLYAG 338 (436)
Q Consensus 268 ~~~l~~al~~~-~~~~i~~~~~~~-~~~~~~~~~~~~~v~~~~pq~~---ll~~~~~~~~I~hgG----~~s~~eal~~G 338 (436)
+..++++++.. +.+++++-.+.. +.+.......++.+.+++++.+ ++..+++ +|.-.. ..++.||+++|
T Consensus 278 ~~~li~a~~~~~~~~l~ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv--~V~pS~~E~~g~~vlEAmA~G 355 (465)
T PLN02871 278 LDFLKRVMERLPGARLAFVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAYASGDV--FVMPSESETLGFVVLEAMASG 355 (465)
T ss_pred HHHHHHHHHhCCCcEEEEEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCE--EEECCcccccCcHHHHHHHcC
Confidence 55566666665 466665543321 1222220124788889997543 7888888 875433 34688999999
Q ss_pred CcEeeccccccchhhHHHHhh---hhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 339 VPMLTFPLFWDQVPNSKQIVQ---DWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 339 vP~l~~P~~~DQ~~na~~~~~---~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
+|+|+.... .....+++ . +.|..++. -+.+++.++|.+++++
T Consensus 356 ~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~--------~d~~~la~~i~~ll~~ 400 (465)
T PLN02871 356 VPVVAARAG----GIPDIIPPDQEG-KTGFLYTP--------GDVDDCVEKLETLLAD 400 (465)
T ss_pred CCEEEcCCC----CcHhhhhcCCCC-CceEEeCC--------CCHHHHHHHHHHHHhC
Confidence 999987643 23344444 4 77888876 3789999999999987
No 51
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.97 E-value=1.5e-06 Score=85.04 Aligned_cols=80 Identities=15% Similarity=0.089 Sum_probs=59.7
Q ss_pred CCCcEEeeccchhh---hccccCcceeec--c-CC-cchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCC
Q 044218 299 DDRGIVVPWCDQLR---VLCHASIGGFWT--H-CG-LNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPE 371 (436)
Q Consensus 299 ~~~~~v~~~~pq~~---ll~~~~~~~~I~--h-gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~ 371 (436)
.+++.+.+++|+.+ +|..+++ +|. . .| ..++.||+++|+|+|+.. .......+.+. ..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~~-~~G~lv~~-- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITDG-ENGLLVDF-- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhcccC-CceEEcCC--
Confidence 35788899998754 6777888 553 2 22 247899999999999854 34556666644 56877776
Q ss_pred ccccCccCHHHHHHHHHHHhcc
Q 044218 372 IASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 372 ~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
.+++++.++|.+++++
T Consensus 351 ------~d~~~la~~i~~ll~~ 366 (396)
T cd03818 351 ------FDPDALAAAVIELLDD 366 (396)
T ss_pred ------CCHHHHHHHHHHHHhC
Confidence 4799999999999987
No 52
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.96 E-value=9.4e-08 Score=91.81 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=60.1
Q ss_pred CCCcEEeeccchhh---hccccCcceeeccC----CcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCC
Q 044218 299 DDRGIVVPWCDQLR---VLCHASIGGFWTHC----GLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPE 371 (436)
Q Consensus 299 ~~~~~v~~~~pq~~---ll~~~~~~~~I~hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~ 371 (436)
.+++.+.+++|+.+ ++..+++ +|.-+ ...++.||+++|+|+|+... ...+..+++. +.|..++. .
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~-~ 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPP-G 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCC-C
Confidence 57899999998654 6888888 77433 34689999999999998653 4456666655 67888876 2
Q ss_pred ccccCccCHHHHHHHHHHHhcc
Q 044218 372 IASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 372 ~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
+. ++.+++.+++++
T Consensus 330 -------~~-~~~~~i~~l~~~ 343 (374)
T cd03817 330 -------DE-ALAEALLRLLQD 343 (374)
T ss_pred -------CH-HHHHHHHHHHhC
Confidence 22 899999999987
No 53
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.94 E-value=4e-07 Score=86.90 Aligned_cols=112 Identities=16% Similarity=0.119 Sum_probs=76.7
Q ss_pred cCCCcEEeeccchhh---hccccCcceeec----cCCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecC
Q 044218 298 ADDRGIVVPWCDQLR---VLCHASIGGFWT----HCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKP 370 (436)
Q Consensus 298 ~~~~~~v~~~~pq~~---ll~~~~~~~~I~----hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~ 370 (436)
.++++.+.+++++.+ ++..+++ +|. -|..+++.||+++|+|+|+.+. ......+++. +.|...+.
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~- 325 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPP- 325 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCC-
Confidence 357899999997433 7888888 773 3456789999999999998765 4456666645 78887776
Q ss_pred CccccCccCHHHHHHHHHHHhccCccchHHHH-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 044218 371 EIASERLVTRDEITELVKRFMDLNSDERKEMS-KRAREVQEICREAAAENGSSITNLDAFLKDI 433 (436)
Q Consensus 371 ~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~-~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 433 (436)
.+.+++.++|.+++++ ++.+ +..++.++.+. +.-+-....+++++.+
T Consensus 326 -------~~~~~l~~~i~~~~~~-----~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 373 (374)
T cd03801 326 -------GDPEALAEAILRLLDD-----PELRRRLGEAARERVA----ERFSWDRVAARTEEVY 373 (374)
T ss_pred -------CCHHHHHHHHHHHHcC-----hHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHhh
Confidence 3689999999999987 4433 33333332333 2456556666665543
No 54
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.93 E-value=2.5e-07 Score=89.35 Aligned_cols=113 Identities=16% Similarity=0.147 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhC-CCeEEEEEcCCC-Ccccc---cccCCCcEEeeccchhh---hccccCcceeeccCC---------c
Q 044218 266 AQMDEIIAGIRNS-GVRYLWVTRGDT-SRFKD---GHADDRGIVVPWCDQLR---VLCHASIGGFWTHCG---------L 328 (436)
Q Consensus 266 ~~~~~l~~al~~~-~~~~i~~~~~~~-~~~~~---~~~~~~~~v~~~~pq~~---ll~~~~~~~~I~hgG---------~ 328 (436)
+.+..+++.+.+. ++++++...+.. ..+.+ ....+++.+.+++++.+ ++..+++ +|.... -
T Consensus 236 ~~l~~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p 313 (394)
T cd03794 236 DTLLEAAALLKDRPDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSP 313 (394)
T ss_pred HHHHHHHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCc
Confidence 4444444445444 556555433322 11111 10246899999998654 6788888 664322 2
Q ss_pred chHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 329 NSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 329 ~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
+++.||+++|+|+|+.+..+.+. .+.+. +.|..++. -+.+++.++|.+++++
T Consensus 314 ~~~~Ea~~~G~pvi~~~~~~~~~----~~~~~-~~g~~~~~--------~~~~~l~~~i~~~~~~ 365 (394)
T cd03794 314 SKLFEYMAAGKPVLASVDGESAE----LVEEA-GAGLVVPP--------GDPEALAAAILELLDD 365 (394)
T ss_pred hHHHHHHHCCCcEEEecCCCchh----hhccC-CcceEeCC--------CCHHHHHHHHHHHHhC
Confidence 34799999999999988765433 33333 67777775 3889999999999977
No 55
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.92 E-value=1.2e-06 Score=84.64 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=75.4
Q ss_pred CCCcEEeeccchhh-hccccCcceeec----cCCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCcc
Q 044218 299 DDRGIVVPWCDQLR-VLCHASIGGFWT----HCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIA 373 (436)
Q Consensus 299 ~~~~~v~~~~pq~~-ll~~~~~~~~I~----hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~ 373 (436)
.+++.+.++.++.. ++..+++ +|. -|.-.++.||+++|+|+|+.. ....+..+++. ..|...+.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~----~~~~~e~i~~~-~~G~~~~~---- 320 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASN----AGGIPEVVKHG-ETGFLVDV---- 320 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeC----CCCchhhhcCC-CceEEcCC----
Confidence 46788888887644 8888888 662 233459999999999999854 34456666644 56777665
Q ss_pred ccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044218 374 SERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDISR 435 (436)
Q Consensus 374 ~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 435 (436)
-+.+++.+++.+++++ +..++. +++..++.+.+.-+.....+++.+.+++
T Consensus 321 ----~~~~~l~~~i~~l~~~-----~~~~~~---~~~~~~~~~~~~fs~~~~~~~~~~~y~~ 370 (371)
T cd04962 321 ----GDVEAMAEYALSLLED-----DELWQE---FSRAARNRAAERFDSERIVPQYEALYRR 370 (371)
T ss_pred ----CCHHHHHHHHHHHHhC-----HHHHHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 3789999999999987 443332 2333332222345666666666665543
No 56
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.91 E-value=9.1e-07 Score=82.95 Aligned_cols=300 Identities=15% Similarity=0.137 Sum_probs=159.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccc--ccccCCCCCCCCeeEEecCCCCCCCCCCCCCHHHHHH
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEW--LGFIGSQSKPHNIRFRTLPNTIPSEHGRANDFAGFLE 91 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~--~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~~~ 91 (436)
|+|.|--. ..-|+.-+-.+.++|.+ +||+|.+.+.+.. .+.++.. |+++..+...- ......+.
T Consensus 1 MkIwiDi~-~p~hvhfFk~~I~eL~~--~GheV~it~R~~~~~~~LL~~y----g~~y~~iG~~g-------~~~~~Kl~ 66 (335)
T PF04007_consen 1 MKIWIDIT-HPAHVHFFKNIIRELEK--RGHEVLITARDKDETEELLDLY----GIDYIVIGKHG-------DSLYGKLL 66 (335)
T ss_pred CeEEEECC-CchHHHHHHHHHHHHHh--CCCEEEEEEeccchHHHHHHHc----CCCeEEEcCCC-------CCHHHHHH
Confidence 44544333 23399999999999999 9999999887543 2345666 88888886321 22222222
Q ss_pred HHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHHhhHHHHhcCCCCC
Q 044218 92 AVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERNGHFPF 171 (436)
Q Consensus 92 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 171 (436)
....+ ..++++.+++. +||++|+- ..+.+..+|..+|+|++.+.-+....... ....|+
T Consensus 67 ~~~~R----~~~l~~~~~~~-------~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~---------~Lt~Pl 125 (335)
T PF04007_consen 67 ESIER----QYKLLKLIKKF-------KPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQN---------RLTLPL 125 (335)
T ss_pred HHHHH----HHHHHHHHHhh-------CCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccc---------eeehhc
Confidence 22222 12333333333 89999975 55778889999999999987654321100 001111
Q ss_pred CCCCCCCcccccCCCCCCCCCCCCCcccccCCchHHHHHHHh--hcccccc-eEEEEcchhhhhHHHHHHHhhcCCCCeE
Q 044218 172 DLSEKGDELVDCIPGLEPTKLADFPTIFHGAGRKILHAALQS--ASKVSKA-QYLLLSSVYKLEAKTIDALKEEFSFPVL 248 (436)
Q Consensus 172 ~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 248 (436)
. ...+.|... + ...+...-.. ...++.. ...-++. +.-++..++.+.-+ +.+..
T Consensus 126 a-------~~i~~P~~~-------~-------~~~~~~~G~~~~i~~y~G~~E~ayl~~-F~Pd~~vl~~lg~~-~~~yI 182 (335)
T PF04007_consen 126 A-------DVIITPEAI-------P-------KEFLKRFGAKNQIRTYNGYKELAYLHP-FKPDPEVLKELGLD-DEPYI 182 (335)
T ss_pred C-------CeeECCccc-------C-------HHHHHhcCCcCCEEEECCeeeEEeecC-CCCChhHHHHcCCC-CCCEE
Confidence 0 001111110 0 0000000000 0000000 0111122 23344444444421 33455
Q ss_pred EecCCCCCCCCC-cccChHHHHHHHHHHHhCCCeEEEEEcCCCC-cccccccCCCcEEe-eccchhhhccccCcceeecc
Q 044218 249 LAQFCTSHWEAF-YSVSSAQMDEIIAGIRNSGVRYLWVTRGDTS-RFKDGHADDRGIVV-PWCDQLRVLCHASIGGFWTH 325 (436)
Q Consensus 249 ~vGpl~~~wGS~-~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~-~~~~~~~~~~~~v~-~~~pq~~ll~~~~~~~~I~h 325 (436)
.+.|- +|.+. .......+..+++.+++.+..+|+..+...+ ...+. . ++.+. .-+.-.+||.++++ +|+-
T Consensus 183 vvR~~--~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~~~~~~~-~--~~~i~~~~vd~~~Ll~~a~l--~Ig~ 255 (335)
T PF04007_consen 183 VVRPE--AWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQRELFEK-Y--GVIIPPEPVDGLDLLYYADL--VIGG 255 (335)
T ss_pred EEEec--cccCeeecCccchHHHHHHHHHhhCceEEEecCCcchhhHHhc-c--CccccCCCCCHHHHHHhcCE--EEeC
Confidence 56653 45442 2234456778999999998874444443321 11122 1 23333 44555579999999 9988
Q ss_pred CCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHh
Q 044218 326 CGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFM 391 (436)
Q Consensus 326 gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll 391 (436)
|| ....||...|+|.|.+ +.++-...-+.+.+. |. .... -+.+++.+.+.+.+
T Consensus 256 gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl--l~~~--------~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 256 GG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL--LYHS--------TDPDEIVEYVRKNL 308 (335)
T ss_pred Cc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC--eEec--------CCHHHHHHHHHHhh
Confidence 87 5778999999999985 223322333455545 65 3332 27788887666544
No 57
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.88 E-value=2.1e-06 Score=84.44 Aligned_cols=114 Identities=14% Similarity=0.087 Sum_probs=72.8
Q ss_pred CCcEEeeccchhh---hccccCcceeeccCCc------chHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecC
Q 044218 300 DRGIVVPWCDQLR---VLCHASIGGFWTHCGL------NSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKP 370 (436)
Q Consensus 300 ~~~~v~~~~pq~~---ll~~~~~~~~I~hgG~------~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~ 370 (436)
+|+.+.+|+|+.+ ++..+++..+.+..+. +.+.|++++|+|+|+....+. .....++ +.|+.++.
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i~---~~G~~~~~- 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLVE---GIGVCVEP- 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHHh---CCcEEeCC-
Confidence 4788899998643 7888888444444332 236899999999999875431 1122333 67877776
Q ss_pred CccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044218 371 EIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDIS 434 (436)
Q Consensus 371 ~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 434 (436)
-+.+++.++|.+++++ +..++ ++++..++.+.+.-+.....+++++.++
T Consensus 358 -------~d~~~la~~i~~l~~~-----~~~~~---~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 406 (412)
T PRK10307 358 -------ESVEALVAAIAALARQ-----ALLRP---KLGTVAREYAERTLDKENVLRQFIADIR 406 (412)
T ss_pred -------CCHHHHHHHHHHHHhC-----HHHHH---HHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 4889999999999877 43332 3333333333334566666666665554
No 58
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.87 E-value=3.1e-06 Score=83.62 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=59.4
Q ss_pred CcEEeeccchh-hhccccCcceeecc-----CCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccc
Q 044218 301 RGIVVPWCDQL-RVLCHASIGGFWTH-----CGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIAS 374 (436)
Q Consensus 301 ~~~v~~~~pq~-~ll~~~~~~~~I~h-----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~ 374 (436)
++.+.+...+. .++..+++ ++.. +|..++.||+++|+|+|+-|...++......+.+. |.++. .
T Consensus 303 ~v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~--~----- 372 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQ--V----- 372 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEE--E-----
Confidence 56666655543 47788887 4431 34446999999999999999988888888777655 66544 3
Q ss_pred cCccCHHHHHHHHHHHhcc
Q 044218 375 ERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 375 ~~~~t~~~l~~~i~~ll~~ 393 (436)
-+++++.++|.++++|
T Consensus 373 ---~d~~~La~~l~~ll~~ 388 (425)
T PRK05749 373 ---EDAEDLAKAVTYLLTD 388 (425)
T ss_pred ---CCHHHHHHHHHHHhcC
Confidence 2789999999999987
No 59
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.86 E-value=8e-07 Score=87.38 Aligned_cols=119 Identities=13% Similarity=-0.034 Sum_probs=70.7
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccccc---ccCCCCCCCCeeEEecCCCCCCCCCCCCCHHH
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLG---FIGSQSKPHNIRFRTLPNTIPSEHGRANDFAG 88 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~---~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~ 88 (436)
+.+||.+++....|+-..+..+|+.|.+ +||+|++++...... ..... ++.++.++..-. .......+..
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~--~G~~V~ii~~~~~~~~~~~~~~~----~v~~~~~~~~~~-~~~~~~~~~~ 74 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAK--HGWKVDLVGYLETPPHDEILSNP----NITIHPLPPPPQ-RLNKLPFLLF 74 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHh--cCceEEEEEecCCCCCHHHhcCC----CEEEEECCCCcc-ccccchHHHH
Confidence 4678999999999999999999999999 999999998653221 12233 788877753210 0000011111
Q ss_pred HHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcC-Cc----chHHHHhHhcCCCeEEEc
Q 044218 89 FLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADT-YL----PWVVDVGNRRNIPVASLW 147 (436)
Q Consensus 89 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~-~~----~~~~~~A~~~gIP~v~~~ 147 (436)
+...........+..++... ++|+|++.. .. ..+..++...++|+|+.+
T Consensus 75 ~~~~~~~~~~~~~~~l~~~~----------~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~ 128 (415)
T cd03816 75 APLKVLWQFFSLLWLLYKLR----------PADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDW 128 (415)
T ss_pred HHHHHHHHHHHHHHHHHhcC----------CCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEc
Confidence 22222222222333333322 899998753 22 124445677899998753
No 60
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.80 E-value=3.2e-06 Score=81.34 Aligned_cols=113 Identities=18% Similarity=0.172 Sum_probs=73.9
Q ss_pred CCCcEEeeccc-hh---hhccccCcceeeccC----CcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecC
Q 044218 299 DDRGIVVPWCD-QL---RVLCHASIGGFWTHC----GLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKP 370 (436)
Q Consensus 299 ~~~~~v~~~~p-q~---~ll~~~~~~~~I~hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~ 370 (436)
..++.+.+|++ +. .++..+++ +|.-. ..+++.||+++|+|+|+.... .....+.+. +.|..++.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~-~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHG-VTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCC-CceEEeCC-
Confidence 56788889998 33 36888888 87743 357899999999999986542 333444433 56777665
Q ss_pred CccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044218 371 EIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDIS 434 (436)
Q Consensus 371 ~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 434 (436)
.+.+++.+++.+++++ ++..+ ++++..++...+.-+.+...+++++.++
T Consensus 315 -------~~~~~~~~~l~~l~~~-----~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 363 (365)
T cd03825 315 -------GDPEDLAEGIEWLLAD-----PDERE---ELGEAARELAENEFDSRVQAKRYLSLYE 363 (365)
T ss_pred -------CCHHHHHHHHHHHHhC-----HHHHH---HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4789999999999987 44222 2333333332234566666666666554
No 61
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.78 E-value=1.4e-05 Score=78.00 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=58.2
Q ss_pred CCCcEEeeccchh---hhccccCcceeeccC---C-cchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCC
Q 044218 299 DDRGIVVPWCDQL---RVLCHASIGGFWTHC---G-LNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPE 371 (436)
Q Consensus 299 ~~~~~v~~~~pq~---~ll~~~~~~~~I~hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~ 371 (436)
.+++.+.+++|+. .++..+++ ++... | ..++.||+++|+|+|+.-.. .....+.+. +.|...+.
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~~-~~g~~~~~-- 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVDG-ETGFLCEP-- 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhccC-CceEEeCC--
Confidence 4689999999975 36777887 66422 2 24788999999999997442 334455544 56776655
Q ss_pred ccccCccCHHHHHHHHHHHhcc
Q 044218 372 IASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 372 ~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
+.+++.++|.+++++
T Consensus 350 -------~~~~~a~~i~~l~~~ 364 (392)
T cd03805 350 -------TPEEFAEAMLKLAND 364 (392)
T ss_pred -------CHHHHHHHHHHHHhC
Confidence 789999999999987
No 62
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.76 E-value=8.5e-06 Score=79.93 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=59.8
Q ss_pred CCCcEEeeccchh---hhccccCcceeec---cCC-cchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCC
Q 044218 299 DDRGIVVPWCDQL---RVLCHASIGGFWT---HCG-LNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPE 371 (436)
Q Consensus 299 ~~~~~v~~~~pq~---~ll~~~~~~~~I~---hgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~ 371 (436)
.+++.+.+++++. .+|..+++ +|. +-| ..++.||+++|+|+|+.... .....+++. +.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADG-ETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccC-CceEECCC--
Confidence 3679999999854 47888888 663 223 35899999999999986543 344556544 67877775
Q ss_pred ccccCccCHHHHHHHHHHHhcc
Q 044218 372 IASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 372 ~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
-+.+++.++|.+++++
T Consensus 353 ------~d~~~la~~i~~~l~~ 368 (405)
T TIGR03449 353 ------HDPADWADALARLLDD 368 (405)
T ss_pred ------CCHHHHHHHHHHHHhC
Confidence 3889999999999987
No 63
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.75 E-value=3.2e-06 Score=81.05 Aligned_cols=115 Identities=16% Similarity=0.203 Sum_probs=71.4
Q ss_pred ChHHHHHHHHHHHhC--CCeEEEEEcCCCC-ccc--------ccccCCCcEEeeccchhh-hccccCcceeecc----CC
Q 044218 264 SSAQMDEIIAGIRNS--GVRYLWVTRGDTS-RFK--------DGHADDRGIVVPWCDQLR-VLCHASIGGFWTH----CG 327 (436)
Q Consensus 264 ~~~~~~~l~~al~~~--~~~~i~~~~~~~~-~~~--------~~~~~~~~~v~~~~pq~~-ll~~~~~~~~I~h----gG 327 (436)
..+.+..++..+.+. ++.++++-.+... ... +....+++++.+|.++.. ++..+++ +|.= -|
T Consensus 199 g~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~i~ps~~~e~ 276 (355)
T cd03819 199 GQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADI--VVSASTEPEA 276 (355)
T ss_pred CHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCE--EEecCCCCCC
Confidence 344455555556553 4555554433221 111 000246788888865443 8888888 5532 23
Q ss_pred -cchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 328 -LNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 328 -~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
.+++.||+++|+|+|+.-. ..+...+.+. +.|..++. -+.+++.++|.+++..
T Consensus 277 ~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~--------~~~~~l~~~i~~~~~~ 330 (355)
T cd03819 277 FGRTAVEAQAMGRPVIASDH----GGARETVRPG-ETGLLVPP--------GDAEALAQALDQILSL 330 (355)
T ss_pred CchHHHHHHhcCCCEEEcCC----CCcHHHHhCC-CceEEeCC--------CCHHHHHHHHHHHHhh
Confidence 3589999999999998653 3345556544 57888776 3899999999766643
No 64
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.74 E-value=3.4e-06 Score=82.59 Aligned_cols=78 Identities=13% Similarity=0.127 Sum_probs=54.6
Q ss_pred CCCcEEeeccchhh---hccccCcceeecc---CCcc-hHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCC
Q 044218 299 DDRGIVVPWCDQLR---VLCHASIGGFWTH---CGLN-STIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPE 371 (436)
Q Consensus 299 ~~~~~v~~~~pq~~---ll~~~~~~~~I~h---gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~ 371 (436)
.+++.+.+|+|+.+ +++.+++ +|.- -|.| ++.||+++|+|+|+.+..+ ....+. . |.+.....
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~-~-~~~~~~~~-- 318 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLP-P-DMILLAEP-- 318 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhee-C-CceeecCC--
Confidence 45788899998533 7778888 6642 2443 9999999999999977642 233443 3 43433333
Q ss_pred ccccCccCHHHHHHHHHHHhcc
Q 044218 372 IASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 372 ~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
+.+++.+++.+++++
T Consensus 319 -------~~~~l~~~l~~~l~~ 333 (398)
T cd03796 319 -------DVESIVRKLEEAISI 333 (398)
T ss_pred -------CHHHHHHHHHHHHhC
Confidence 789999999999875
No 65
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.71 E-value=3e-05 Score=74.29 Aligned_cols=78 Identities=24% Similarity=0.290 Sum_probs=57.9
Q ss_pred CCCcEEeeccchhh---hccccCcceeeccC----CcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCC
Q 044218 299 DDRGIVVPWCDQLR---VLCHASIGGFWTHC----GLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPE 371 (436)
Q Consensus 299 ~~~~~v~~~~pq~~---ll~~~~~~~~I~hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~ 371 (436)
.+++.+.+|+++.+ ++..+++ +|.-. -.+++.||+++|+|+|+.+. ......+. . +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~~-~-~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELIE-Y-GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHhh-c-CceEEeCC--
Confidence 57889999999543 6788888 65432 24689999999999999653 33455554 4 67776665
Q ss_pred ccccCccCHHHHHHHHHHHhcc
Q 044218 372 IASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 372 ~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
+.+++.++|.+++++
T Consensus 331 -------~~~~~~~~i~~l~~~ 345 (375)
T cd03821 331 -------DVDALAAALRRALEL 345 (375)
T ss_pred -------ChHHHHHHHHHHHhC
Confidence 569999999999987
No 66
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.71 E-value=9e-06 Score=76.98 Aligned_cols=90 Identities=23% Similarity=0.336 Sum_probs=62.5
Q ss_pred CCCcEEeeccch-hhhccccCcceeeccCC----cchHHHHHhcCCcEeeccccccchhhHHHHhhhhc-eeeEeecCCc
Q 044218 299 DDRGIVVPWCDQ-LRVLCHASIGGFWTHCG----LNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWK-TGWRVKKPEI 372 (436)
Q Consensus 299 ~~~~~v~~~~pq-~~ll~~~~~~~~I~hgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG-~G~~~~~~~~ 372 (436)
..++.+.++..+ ..++..+++ +|.-.. -+++.||+++|+|+|+.+....+. .+.+. | .|...+.
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~-~~~g~~~~~--- 303 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIED-GVNGLLVPN--- 303 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhcc-CcceEEeCC---
Confidence 456777777443 348888888 775542 468999999999999876544332 23334 4 7877776
Q ss_pred cccCccCHHHHHHHHHHHhccCccchHHHHHHHHHH
Q 044218 373 ASERLVTRDEITELVKRFMDLNSDERKEMSKRAREV 408 (436)
Q Consensus 373 ~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l 408 (436)
.+.+++.++|.+++++ ++.+++..+-
T Consensus 304 -----~~~~~~~~~i~~ll~~-----~~~~~~~~~~ 329 (348)
T cd03820 304 -----GDVEALAEALLRLMED-----EELRKRMGAN 329 (348)
T ss_pred -----CCHHHHHHHHHHHHcC-----HHHHHHHHHH
Confidence 4789999999999988 6655544433
No 67
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.71 E-value=1.8e-05 Score=75.68 Aligned_cols=80 Identities=15% Similarity=0.151 Sum_probs=61.2
Q ss_pred CCCcEEeeccchh---hhccccCcceeec----cCCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCC
Q 044218 299 DDRGIVVPWCDQL---RVLCHASIGGFWT----HCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPE 371 (436)
Q Consensus 299 ~~~~~v~~~~pq~---~ll~~~~~~~~I~----hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~ 371 (436)
.+++.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+-+. ......+++. +.|...+.
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~~~~-~~g~~~~~-- 328 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEIITDG-ENGLLVPP-- 328 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHhcCC-cceeEECC--
Confidence 5689999999864 46777888 662 3456789999999999998654 3345566645 66777776
Q ss_pred ccccCccCHHHHHHHHHHHhcc
Q 044218 372 IASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 372 ~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
-+.+++.++|.+++++
T Consensus 329 ------~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 329 ------GDPEALAEAILRLLAD 344 (377)
T ss_pred ------CCHHHHHHHHHHHhcC
Confidence 4899999999999987
No 68
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.67 E-value=1.2e-06 Score=84.76 Aligned_cols=117 Identities=16% Similarity=0.213 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhC-----CCeEEEEEcCCCC---ccccc-ccCCCcEEeeccch---hhhccccCcceeeccCCcchHHHH
Q 044218 267 QMDEIIAGIRNS-----GVRYLWVTRGDTS---RFKDG-HADDRGIVVPWCDQ---LRVLCHASIGGFWTHCGLNSTIES 334 (436)
Q Consensus 267 ~~~~l~~al~~~-----~~~~i~~~~~~~~---~~~~~-~~~~~~~v~~~~pq---~~ll~~~~~~~~I~hgG~~s~~ea 334 (436)
.+..+++++..+ +.++++..+++.. .+.+. ...+++++.+.+++ ..++.++++ +|+..|. .+.||
T Consensus 213 ~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~-~~~EA 289 (365)
T TIGR00236 213 PLENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHL--ILTDSGG-VQEEA 289 (365)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCE--EEECChh-HHHHH
Confidence 355666666553 4566665443321 01111 02357888876664 346777877 9998774 47999
Q ss_pred HhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHH
Q 044218 335 LYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRA 405 (436)
Q Consensus 335 l~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a 405 (436)
+++|+|+|..+-..+++. .+ +. |.++.+.. ++++|.+++.+++++ +..+++.
T Consensus 290 ~a~g~PvI~~~~~~~~~e---~~-~~-g~~~lv~~---------d~~~i~~ai~~ll~~-----~~~~~~~ 341 (365)
T TIGR00236 290 PSLGKPVLVLRDTTERPE---TV-EA-GTNKLVGT---------DKENITKAAKRLLTD-----PDEYKKM 341 (365)
T ss_pred HHcCCCEEECCCCCCChH---HH-hc-CceEEeCC---------CHHHHHHHHHHHHhC-----hHHHHHh
Confidence 999999999876555552 22 24 77766654 889999999999987 6555543
No 69
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.66 E-value=5.8e-06 Score=78.58 Aligned_cols=135 Identities=16% Similarity=0.134 Sum_probs=81.4
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCCCcc-----cccc-cCCCcEEeeccchhh---hccccCcceeec----cCCc-chHHH
Q 044218 268 MDEIIAGIRNSGVRYLWVTRGDTSRF-----KDGH-ADDRGIVVPWCDQLR---VLCHASIGGFWT----HCGL-NSTIE 333 (436)
Q Consensus 268 ~~~l~~al~~~~~~~i~~~~~~~~~~-----~~~~-~~~~~~v~~~~pq~~---ll~~~~~~~~I~----hgG~-~s~~e 333 (436)
...+++++++.+.++++.-.+..... .... ..+++.+.+++++.+ +++.+++ ++. +-|. .++.|
T Consensus 186 ~~~li~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~--~v~ps~~~E~~~~~~lE 263 (335)
T cd03802 186 PHLAIRAARRAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARA--LLFPILWEEPFGLVMIE 263 (335)
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcE--EEeCCcccCCcchHHHH
Confidence 44566777888888776654432111 1110 147899999998753 6777887 553 2343 47999
Q ss_pred HHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHH
Q 044218 334 SLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICR 413 (436)
Q Consensus 334 al~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~ 413 (436)
|+++|+|+|+.... .+...+.+. ..|...+ ..+++.+++.+++.. . ++++++ .+
T Consensus 264 Ama~G~PvI~~~~~----~~~e~i~~~-~~g~l~~----------~~~~l~~~l~~l~~~-----~--~~~~~~---~~- 317 (335)
T cd03802 264 AMACGTPVIAFRRG----AVPEVVEDG-VTGFLVD----------SVEELAAAVARADRL-----D--RAACRR---RA- 317 (335)
T ss_pred HHhcCCCEEEeCCC----CchhheeCC-CcEEEeC----------CHHHHHHHHHHHhcc-----H--HHHHHH---HH-
Confidence 99999999987653 333444422 2565443 388999999888654 2 222222 12
Q ss_pred HHHhcCCChHHHHHHHHHHH
Q 044218 414 EAAAENGSSITNLDAFLKDI 433 (436)
Q Consensus 414 ~a~~~~g~~~~~~~~~~~~~ 433 (436)
.+..+.....+++++.+
T Consensus 318 ---~~~~s~~~~~~~~~~~y 334 (335)
T cd03802 318 ---ERRFSAARMVDDYLALY 334 (335)
T ss_pred ---HHhCCHHHHHHHHHHHh
Confidence 23566666666666543
No 70
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.65 E-value=5.6e-06 Score=79.39 Aligned_cols=114 Identities=14% Similarity=0.119 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhCC-CeEEEEEcCCCCc-cc----ccccCCCcEEeeccchh---hhccccCcceeec---cCCc-chHHH
Q 044218 267 QMDEIIAGIRNSG-VRYLWVTRGDTSR-FK----DGHADDRGIVVPWCDQL---RVLCHASIGGFWT---HCGL-NSTIE 333 (436)
Q Consensus 267 ~~~~l~~al~~~~-~~~i~~~~~~~~~-~~----~~~~~~~~~v~~~~pq~---~ll~~~~~~~~I~---hgG~-~s~~e 333 (436)
....+++++.... ..+++...+.... +. +....+|+.+.+|+|+. .++..+++..+-+ +-|. .++.|
T Consensus 205 ~~~~li~a~~~l~~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~E 284 (357)
T cd03795 205 GLDVLLEAAAALPDAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLE 284 (357)
T ss_pred CHHHHHHHHHhccCcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHH
Confidence 3445666666665 6666654443211 11 11134689999999974 3777788833323 2343 37899
Q ss_pred HHhcCCcEeeccccccchhhHHHHhh-hhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 334 SLYAGVPMLTFPLFWDQVPNSKQIVQ-DWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 334 al~~GvP~l~~P~~~DQ~~na~~~~~-~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
|+++|+|+|+....... ..+.+ . +.|...+. -+.+++.++|.+++++
T Consensus 285 a~~~g~Pvi~~~~~~~~----~~i~~~~-~~g~~~~~--------~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 285 AMAFGKPVISTEIGTGG----SYVNLHG-VTGLVVPP--------GDPAALAEAIRRLLED 332 (357)
T ss_pred HHHcCCCEEecCCCCch----hHHhhCC-CceEEeCC--------CCHHHHHHHHHHHHHC
Confidence 99999999997654443 33332 4 67877775 3799999999999987
No 71
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.65 E-value=7.1e-06 Score=79.09 Aligned_cols=112 Identities=14% Similarity=0.147 Sum_probs=70.1
Q ss_pred HHHHHHHHHhC--CCeEEEEEcCCC-Ccccc----cccCCCcEEeeccch--h---hhccccCcceeecc----CCcchH
Q 044218 268 MDEIIAGIRNS--GVRYLWVTRGDT-SRFKD----GHADDRGIVVPWCDQ--L---RVLCHASIGGFWTH----CGLNST 331 (436)
Q Consensus 268 ~~~l~~al~~~--~~~~i~~~~~~~-~~~~~----~~~~~~~~v~~~~pq--~---~ll~~~~~~~~I~h----gG~~s~ 331 (436)
+..+++++... +++++++-.+.. +.+.+ ...++++.+.+|+++ . ..+..+++ +|.- |--.++
T Consensus 197 ~~~l~~a~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~--~v~~s~~Egf~~~~ 274 (359)
T PRK09922 197 VKELFDGLSQTTGEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSA--LLLTSKFEGFPMTL 274 (359)
T ss_pred HHHHHHHHHhhCCCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcE--EEECCcccCcChHH
Confidence 45566666554 355555443322 11111 113578999999854 2 23444566 6643 225689
Q ss_pred HHHHhcCCcEeecc-ccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccC
Q 044218 332 IESLYAGVPMLTFP-LFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLN 394 (436)
Q Consensus 332 ~eal~~GvP~l~~P-~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~ 394 (436)
.||+++|+|+|+.- ..+ ....+++. ..|..++. -+.+++.++|.++++++
T Consensus 275 lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv~~--------~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 275 LEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELYTP--------GNIDEFVGKLNKVISGE 325 (359)
T ss_pred HHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEECC--------CCHHHHHHHHHHHHhCc
Confidence 99999999999875 322 22445544 56877776 48999999999999884
No 72
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.63 E-value=4.7e-05 Score=73.02 Aligned_cols=110 Identities=12% Similarity=0.101 Sum_probs=71.4
Q ss_pred CCCcEEeeccchh-hhccccCcceeeccCC----cchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCcc
Q 044218 299 DDRGIVVPWCDQL-RVLCHASIGGFWTHCG----LNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIA 373 (436)
Q Consensus 299 ~~~~~v~~~~pq~-~ll~~~~~~~~I~hgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~ 373 (436)
.+++.+.++..+. .++..+++ +|.-.. .+++.||+++|+|+|+. |...+...+++ .|..+..
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~---~g~~~~~---- 310 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD---SGLIVPI---- 310 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC---CceEeCC----
Confidence 4678888887653 48888888 665332 46889999999999974 45566666664 3444444
Q ss_pred ccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 044218 374 SERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDI 433 (436)
Q Consensus 374 ~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 433 (436)
.+.+++.+++.++++++ +.+++...+.++.+. +.-+-....+++.+.+
T Consensus 311 ----~~~~~~~~~i~~ll~~~----~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~y 358 (360)
T cd04951 311 ----SDPEALANKIDEILKMS----GEERDIIGARRERIV----KKFSINSIVQQWLTLY 358 (360)
T ss_pred ----CCHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHh
Confidence 38899999999998542 455544433333333 3455555555555544
No 73
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.61 E-value=2.2e-05 Score=75.22 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=59.3
Q ss_pred CCCcEEeeccchhh---hccccCcceeec----------cCCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceee
Q 044218 299 DDRGIVVPWCDQLR---VLCHASIGGFWT----------HCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGW 365 (436)
Q Consensus 299 ~~~~~v~~~~pq~~---ll~~~~~~~~I~----------hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~ 365 (436)
++++++.+++|+.+ ++..+++ +|. -|.-+++.||+++|+|+|+.+... ....+++. ..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~-~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDG-ETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCC-CceE
Confidence 57899999997543 6777888 666 233468999999999999866432 33445433 4787
Q ss_pred EeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 366 RVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 366 ~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
.++. -+.+++.++|.+++++
T Consensus 308 ~~~~--------~~~~~l~~~i~~~~~~ 327 (355)
T cd03799 308 LVPP--------GDPEALADAIERLLDD 327 (355)
T ss_pred EeCC--------CCHHHHHHHHHHHHhC
Confidence 7775 3899999999999987
No 74
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.61 E-value=7.5e-05 Score=79.19 Aligned_cols=113 Identities=15% Similarity=0.028 Sum_probs=69.7
Q ss_pred CCCcEEeeccchhh---hccccC--cceeecc---CC-cchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeec
Q 044218 299 DDRGIVVPWCDQLR---VLCHAS--IGGFWTH---CG-LNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKK 369 (436)
Q Consensus 299 ~~~~~v~~~~pq~~---ll~~~~--~~~~I~h---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~ 369 (436)
.+++.+.+++++.+ ++..++ .++||.- =| -.++.||+++|+|+|+....+ ....++.. ..|+.+++
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g-~nGlLVdP 621 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVL-DNGLLVDP 621 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccC-CcEEEECC
Confidence 36788888887654 565552 1227663 23 348899999999999986532 23334323 46888876
Q ss_pred CCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 044218 370 PEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDI 433 (436)
Q Consensus 370 ~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 433 (436)
-+++.|.++|.+++++ +..+++..+-+ ++.+. ..+-...++++++.+
T Consensus 622 --------~D~eaLA~AL~~LL~D-----pelr~~m~~~g---r~~v~-~FSWe~ia~~yl~~i 668 (1050)
T TIGR02468 622 --------HDQQAIADALLKLVAD-----KQLWAECRQNG---LKNIH-LFSWPEHCKTYLSRI 668 (1050)
T ss_pred --------CCHHHHHHHHHHHhhC-----HHHHHHHHHHH---HHHHH-HCCHHHHHHHHHHHH
Confidence 4889999999999987 55444333222 22221 244455555555444
No 75
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.57 E-value=4.5e-06 Score=80.56 Aligned_cols=112 Identities=17% Similarity=0.229 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHhCCCe-EEEEEcCCC---Ccccc---c-cc-CCCcEEeeccchh---hhccccCcceeeccCCcchHH
Q 044218 265 SAQMDEIIAGIRNSGVR-YLWVTRGDT---SRFKD---G-HA-DDRGIVVPWCDQL---RVLCHASIGGFWTHCGLNSTI 332 (436)
Q Consensus 265 ~~~~~~l~~al~~~~~~-~i~~~~~~~---~~~~~---~-~~-~~~~~v~~~~pq~---~ll~~~~~~~~I~hgG~~s~~ 332 (436)
...+..++++++..... +.+...+.. ..+.+ . .. .+++.+.+..++. .++..+++ +|+..| |.+.
T Consensus 214 ~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~--~v~~Sg-gi~~ 290 (363)
T cd03786 214 GEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADL--VLTDSG-GIQE 290 (363)
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcE--EEEcCc-cHHh
Confidence 45567777777765322 333333322 11211 1 01 3577777655433 46777888 999999 7788
Q ss_pred HHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 333 ESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 333 eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
||+++|+|+|+++.. |. +..+.+. |+++.+.. +.++|.++|.+++++
T Consensus 291 Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~~---------~~~~i~~~i~~ll~~ 337 (363)
T cd03786 291 EASFLGVPVLNLRDR--TE--RPETVES-GTNVLVGT---------DPEAILAAIEKLLSD 337 (363)
T ss_pred hhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecCC---------CHHHHHHHHHHHhcC
Confidence 999999999998743 22 3344445 76655543 689999999999987
No 76
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.56 E-value=2.3e-05 Score=75.61 Aligned_cols=80 Identities=15% Similarity=0.108 Sum_probs=61.6
Q ss_pred CCCcEEeeccchhh---hccccCcceeecc----------CCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceee
Q 044218 299 DDRGIVVPWCDQLR---VLCHASIGGFWTH----------CGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGW 365 (436)
Q Consensus 299 ~~~~~v~~~~pq~~---ll~~~~~~~~I~h----------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~ 365 (436)
.+++.+.+++|+.+ ++..+++ +|.- |-.+++.||+++|+|+|+-+.. .++..+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 56788889998644 5888888 6632 2356899999999999987653 366666655 7888
Q ss_pred EeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 366 RVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 366 ~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
.++. -+.+++.++|.+++++
T Consensus 317 ~~~~--------~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 317 LVPE--------GDVAALAAALGRLLAD 336 (367)
T ss_pred EECC--------CCHHHHHHHHHHHHcC
Confidence 8875 3789999999999987
No 77
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.56 E-value=3.3e-05 Score=74.19 Aligned_cols=139 Identities=21% Similarity=0.232 Sum_probs=79.1
Q ss_pred HHHHHHHHHhCC--CeEEEEEcCCC-Ccc----c-ccccCCCcEEeeccchhh---hccccCcceeeccCCc-----chH
Q 044218 268 MDEIIAGIRNSG--VRYLWVTRGDT-SRF----K-DGHADDRGIVVPWCDQLR---VLCHASIGGFWTHCGL-----NST 331 (436)
Q Consensus 268 ~~~l~~al~~~~--~~~i~~~~~~~-~~~----~-~~~~~~~~~v~~~~pq~~---ll~~~~~~~~I~hgG~-----~s~ 331 (436)
+..++++++... .++++.-++.. ..+ . .....+++++.+++++.+ ++..+++ ++-+.-. +++
T Consensus 208 ~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~ 285 (363)
T cd04955 208 IDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSL 285 (363)
T ss_pred HHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHH
Confidence 344555555553 66665544321 111 1 111347899999998764 5666666 6554333 478
Q ss_pred HHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHH
Q 044218 332 IESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEI 411 (436)
Q Consensus 332 ~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~ 411 (436)
.||+++|+|+|+..... +...+++ .|...+. ... +.++|.+++++ +..+ +++++.
T Consensus 286 ~EAma~G~PvI~s~~~~----~~e~~~~---~g~~~~~---------~~~-l~~~i~~l~~~-----~~~~---~~~~~~ 340 (363)
T cd04955 286 LEAMAYGCPVLASDNPF----NREVLGD---KAIYFKV---------GDD-LASLLEELEAD-----PEEV---SAMAKA 340 (363)
T ss_pred HHHHHcCCCEEEecCCc----cceeecC---CeeEecC---------chH-HHHHHHHHHhC-----HHHH---HHHHHH
Confidence 99999999999876432 2222332 2333333 112 99999999987 4333 234444
Q ss_pred HHHHHhcCCChHHHHHHHHHHH
Q 044218 412 CREAAAENGSSITNLDAFLKDI 433 (436)
Q Consensus 412 ~~~a~~~~g~~~~~~~~~~~~~ 433 (436)
.++.+.+.-+-....+++++.+
T Consensus 341 ~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 341 ARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred HHHHHHHhCCHHHHHHHHHHHh
Confidence 4444334566666666666543
No 78
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.54 E-value=1.2e-05 Score=76.15 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=57.1
Q ss_pred CCCcEEeeccchh-hhccccCcceeecc----CCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCcc
Q 044218 299 DDRGIVVPWCDQL-RVLCHASIGGFWTH----CGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIA 373 (436)
Q Consensus 299 ~~~~~v~~~~pq~-~ll~~~~~~~~I~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~ 373 (436)
.+++.+.++.++. .++..+++ +|.- |.-+++.||+++|+|+|+.... .....+++. +.|...+.
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~---- 313 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPV---- 313 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECC----
Confidence 4678888887764 48888888 6632 3356899999999999985443 556677755 78888876
Q ss_pred ccCccCHHHH---HHHHHHHhcc
Q 044218 374 SERLVTRDEI---TELVKRFMDL 393 (436)
Q Consensus 374 ~~~~~t~~~l---~~~i~~ll~~ 393 (436)
-+.+.+ .+.+.+++++
T Consensus 314 ----~~~~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 314 ----GDEAALAAAALALLDLLLD 332 (353)
T ss_pred ----CCHHHHHHHHHHHHhccCC
Confidence 366776 5566666655
No 79
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.54 E-value=7e-05 Score=71.78 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=69.9
Q ss_pred CCCcEEee-ccchh---hhccccCcceeec----c--CCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEee
Q 044218 299 DDRGIVVP-WCDQL---RVLCHASIGGFWT----H--CGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVK 368 (436)
Q Consensus 299 ~~~~~v~~-~~pq~---~ll~~~~~~~~I~----h--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~ 368 (436)
.+++.+.+ |+|+. .+++.+++ +|. . |..+++.||+++|+|+|+.+... ...+.+. +.|..++
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc
Confidence 46788774 48753 47888888 662 2 33458889999999999977544 3334445 6787777
Q ss_pred cCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 044218 369 KPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKD 432 (436)
Q Consensus 369 ~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~ 432 (436)
. -+.+++.+++.+++++ +..++ ++++..++...+ -+.....+++.+.
T Consensus 318 ~--------~d~~~~~~~l~~l~~~-----~~~~~---~~~~~~~~~~~~-~s~~~~~~~~~~~ 364 (366)
T cd03822 318 P--------GDPAALAEAIRRLLAD-----PELAQ---ALRARAREYARA-MSWERVAERYLRL 364 (366)
T ss_pred C--------CCHHHHHHHHHHHHcC-----hHHHH---HHHHHHHHHHhh-CCHHHHHHHHHHH
Confidence 6 3789999999999987 33332 333343333223 4544444544443
No 80
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.53 E-value=1.8e-05 Score=75.46 Aligned_cols=109 Identities=19% Similarity=0.228 Sum_probs=70.7
Q ss_pred CCCcEEeeccchh-hhccccCcceeeccCC----cchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCcc
Q 044218 299 DDRGIVVPWCDQL-RVLCHASIGGFWTHCG----LNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIA 373 (436)
Q Consensus 299 ~~~~~v~~~~pq~-~ll~~~~~~~~I~hgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~ 373 (436)
.+++.+.+...+. .++..+++ +|..+. .+++.||+++|+|+|+. |...+...+.+ .|..++.
T Consensus 250 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~----~~~~~~e~~~~---~g~~~~~---- 316 (365)
T cd03807 250 EDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVAT----DVGDNAELVGD---TGFLVPP---- 316 (365)
T ss_pred CceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEc----CCCChHHHhhc---CCEEeCC----
Confidence 4567777655543 48888888 886544 37999999999999985 44455666653 4555654
Q ss_pred ccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 044218 374 SERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKD 432 (436)
Q Consensus 374 ~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~ 432 (436)
-+.+++.++|.+++++. +.+++ +++..++.+.+.-+-....+++.+.
T Consensus 317 ----~~~~~l~~~i~~l~~~~----~~~~~----~~~~~~~~~~~~~s~~~~~~~~~~~ 363 (365)
T cd03807 317 ----GDPEALAEAIEALLADP----ALRQA----LGEAARERIEENFSIEAMVEAYEEL 363 (365)
T ss_pred ----CCHHHHHHHHHHHHhCh----HHHHH----HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 37899999999999872 23333 3333333333355655656655553
No 81
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.48 E-value=2.3e-05 Score=76.00 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=74.1
Q ss_pred CCcEEeeccch-hhhccccCcceeec--c--CCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccc
Q 044218 300 DRGIVVPWCDQ-LRVLCHASIGGFWT--H--CGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIAS 374 (436)
Q Consensus 300 ~~~~v~~~~pq-~~ll~~~~~~~~I~--h--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~ 374 (436)
+++.+.++..+ ..++..+++ +|. + |--+++.||+++|+|+|+-.. ..+...+++. ..|..++.
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~~-~~g~~~~~----- 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQHG-VTGALVPP----- 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcCC-CceEEeCC-----
Confidence 45666666554 348888888 663 2 335689999999999999664 3355556544 56877775
Q ss_pred cCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044218 375 ERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDIS 434 (436)
Q Consensus 375 ~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 434 (436)
-+.+++.++|.+++++ +..++ ++++..++.+.+.-+.....+++.+.+.
T Consensus 323 ---~d~~~la~~i~~l~~~-----~~~~~---~~~~~a~~~~~~~fs~~~~~~~~~~~y~ 371 (374)
T TIGR03088 323 ---GDAVALARALQPYVSD-----PAARR---AHGAAGRARAEQQFSINAMVAAYAGLYD 371 (374)
T ss_pred ---CCHHHHHHHHHHHHhC-----HHHHH---HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3789999999999987 44332 3333333333345676667777666554
No 82
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.44 E-value=8.7e-06 Score=79.64 Aligned_cols=110 Identities=13% Similarity=0.102 Sum_probs=72.6
Q ss_pred CCCcEEeeccchhh-hccccCcceee--cc--CCcc-hHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCc
Q 044218 299 DDRGIVVPWCDQLR-VLCHASIGGFW--TH--CGLN-STIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEI 372 (436)
Q Consensus 299 ~~~~~v~~~~pq~~-ll~~~~~~~~I--~h--gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~ 372 (436)
.+++.+.+++++.. ++..+++ +| .+ .|.+ .+.||+++|+|+|+.+...+.- .+.. |.|+.+..
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~~--- 347 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVAA--- 347 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeCC---
Confidence 36788999998644 7888888 66 32 3543 6999999999999988643221 1123 56766554
Q ss_pred cccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 044218 373 ASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDI 433 (436)
Q Consensus 373 ~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 433 (436)
+++++.++|.++++| +..++ ++++..++.+.+.-+-...++++.+.+
T Consensus 348 ------~~~~la~ai~~ll~~-----~~~~~---~~~~~ar~~v~~~fsw~~~~~~~~~~l 394 (397)
T TIGR03087 348 ------DPADFAAAILALLAN-----PAERE---ELGQAARRRVLQHYHWPRNLARLDALL 394 (397)
T ss_pred ------CHHHHHHHHHHHHcC-----HHHHH---HHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 899999999999987 44333 344444433334556666666655544
No 83
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.43 E-value=2.4e-05 Score=75.05 Aligned_cols=79 Identities=13% Similarity=0.090 Sum_probs=56.3
Q ss_pred CCCcEEeeccch-hhhccccCcceeecc----CCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCcc
Q 044218 299 DDRGIVVPWCDQ-LRVLCHASIGGFWTH----CGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIA 373 (436)
Q Consensus 299 ~~~~~v~~~~pq-~~ll~~~~~~~~I~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~ 373 (436)
.+++.+.++..+ ..++..+++ +|.- |-.+++.||+++|+|+|+-...+ ....+. . +.|.....
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~-~-~~~~~~~~---- 315 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLT-D-LVKFLSLD---- 315 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhc-c-CccEEeCC----
Confidence 568888887555 348888888 6643 34568999999999999865533 334444 3 45544443
Q ss_pred ccCccCHHHHHHHHHHHhcc
Q 044218 374 SERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 374 ~~~~~t~~~l~~~i~~ll~~ 393 (436)
-+++++.++|.+++++
T Consensus 316 ----~~~~~~a~~i~~l~~~ 331 (358)
T cd03812 316 ----ESPEIWAEEILKLKSE 331 (358)
T ss_pred ----CCHHHHHHHHHHHHhC
Confidence 2679999999999988
No 84
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.39 E-value=0.00057 Score=67.77 Aligned_cols=114 Identities=12% Similarity=0.023 Sum_probs=73.6
Q ss_pred CCCcEEeeccchhh---hcccc--CcceeeccC---C-cchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeec
Q 044218 299 DDRGIVVPWCDQLR---VLCHA--SIGGFWTHC---G-LNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKK 369 (436)
Q Consensus 299 ~~~~~v~~~~pq~~---ll~~~--~~~~~I~hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~ 369 (436)
.+++.+.+++++.+ ++..+ +.++||.-. | -.++.||+++|+|+|+.... .+...+.+. ..|+.++.
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~~-~~G~lv~~ 390 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIANC-RNGLLVDV 390 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcCC-CcEEEeCC
Confidence 46788888877655 46544 123377643 3 35899999999999987643 345555544 56888776
Q ss_pred CCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 044218 370 PEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDI 433 (436)
Q Consensus 370 ~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 433 (436)
-+++++.++|.+++++ +..+ +++++..++.+.+.-+-...++++.+.+
T Consensus 391 --------~d~~~la~~i~~ll~~-----~~~~---~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 391 --------LDLEAIASALEDALSD-----SSQW---QLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred --------CCHHHHHHHHHHHHhC-----HHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4889999999999987 4433 3444444444444555555555555443
No 85
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.38 E-value=0.00046 Score=67.11 Aligned_cols=118 Identities=16% Similarity=0.119 Sum_probs=71.7
Q ss_pred CcEEe-eccchh---hhccccCcceeecc----CCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCc
Q 044218 301 RGIVV-PWCDQL---RVLCHASIGGFWTH----CGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEI 372 (436)
Q Consensus 301 ~~~v~-~~~pq~---~ll~~~~~~~~I~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~ 372 (436)
++.+. +++++. .++..+++ +|.= +...++.||+++|+|+|+... ......+++. +.|..++. .+
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~-~~ 332 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPP-DN 332 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCC-CC
Confidence 34443 667743 36888888 7642 223477999999999998654 3455666655 67888876 21
Q ss_pred cccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044218 373 ASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDISR 435 (436)
Q Consensus 373 ~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 435 (436)
.+..-..+.+.++|.+++++ +..++ ++++..++.+.+.-+.....+++++.+++
T Consensus 333 -~~~~~~~~~l~~~i~~l~~~-----~~~~~---~~~~~a~~~~~~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 333 -SDADGFQAELAKAINILLAD-----PELAK---KMGIAGRKRAEEEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred -CcccchHHHHHHHHHHHHhC-----HHHHH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 00001128999999999987 43332 33333333333356666667777666543
No 86
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.36 E-value=8.3e-05 Score=70.45 Aligned_cols=90 Identities=18% Similarity=0.198 Sum_probs=65.0
Q ss_pred hhhccccCcceeeccCCcchHHHHHhcCCcEeeccc--cccchhhHHHHh---hhhceeeEe-e--------cCCccccC
Q 044218 311 LRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPL--FWDQVPNSKQIV---QDWKTGWRV-K--------KPEIASER 376 (436)
Q Consensus 311 ~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~--~~DQ~~na~~~~---~~lG~G~~~-~--------~~~~~~~~ 376 (436)
.+++..+++ +|+-+|..|+ |+..+|+|||+ +. ..-|+.||+++. .. |+.-.+ + + + .-+.
T Consensus 230 ~~~m~~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~i-gL~Nii~~~~~~~~vvP-E-llQ~ 302 (347)
T PRK14089 230 HKALLEAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHI-GLANIFFDFLGKEPLHP-E-LLQE 302 (347)
T ss_pred HHHHHhhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCee-ehHHHhcCCCcccccCc-h-hhcc
Confidence 458899999 9999999999 99999999988 43 457899999998 33 443222 1 1 0 0124
Q ss_pred ccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHH
Q 044218 377 LVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICR 413 (436)
Q Consensus 377 ~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~ 413 (436)
..|++.|.+.+.+. .. +.+++..+++++.+.
T Consensus 303 ~~t~~~la~~i~~~-~~-----~~~~~~~~~l~~~l~ 333 (347)
T PRK14089 303 FVTVENLLKAYKEM-DR-----EKFFKKSKELREYLK 333 (347)
T ss_pred cCCHHHHHHHHHHH-HH-----HHHHHHHHHHHHHhc
Confidence 47999999999872 22 567777777766653
No 87
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.34 E-value=0.0012 Score=62.60 Aligned_cols=318 Identities=17% Similarity=0.188 Sum_probs=167.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEe-ccccccccCCCCCCCCeeEEecCCCCCCCCCCCCCHHHHHHHHH
Q 044218 16 VLALPYPGRGHVNPMMNICKLLVSRQPDILITFVV-TEEWLGFIGSQSKPHNIRFRTLPNTIPSEHGRANDFAGFLEAVF 94 (436)
Q Consensus 16 vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~-~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~~~~~~ 94 (436)
.+-+=.-+.|-++-.++|.++|+++.+++.+++-+ |+...+.+++...+ .+...-+|-++ .
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~-~v~h~YlP~D~----------~------- 112 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGD-SVIHQYLPLDL----------P------- 112 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCC-CeEEEecCcCc----------h-------
Confidence 44455568899999999999999966699998877 66666655543221 23444444222 1
Q ss_pred HhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcC--CcchHHHHhHhcCCCeEEEcc-hhHHHHHHHHhhHHHHhcCCCCC
Q 044218 95 TKMEAPFEELLDRLLLDDDEQPAAAVTAIIADT--YLPWVVDVGNRRNIPVASLWT-MSALVFSVFHHFELLERNGHFPF 171 (436)
Q Consensus 95 ~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~--~~~~~~~~A~~~gIP~v~~~~-~~~~~~~~~~~~~~~~~~~~~p~ 171 (436)
-.+..+++.+ +||++|.-. .++.-+.-++..|||.+++.. -+.-.+.-+.....+......+.
T Consensus 113 ----~~v~rFl~~~----------~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i 178 (419)
T COG1519 113 ----IAVRRFLRKW----------RPKLLIIMETELWPNLINELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNI 178 (419)
T ss_pred ----HHHHHHHHhc----------CCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhc
Confidence 1233455566 899987443 335555667899999999733 01111111111111111111111
Q ss_pred CCCCCCCc--ccccC-CCCCCCCCCCCCcccccCC---chHHHHHHHhhcccccceEEEEcchhhhhHHHHH---HHhhc
Q 044218 172 DLSEKGDE--LVDCI-PGLEPTKLADFPTIFHGAG---RKILHAALQSASKVSKAQYLLLSSVYKLEAKTID---ALKEE 242 (436)
Q Consensus 172 ~~~~~~~~--~~~~~-p~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~ 242 (436)
...-..++ ...+. -|...+....--.+..... .............- +.-++...++++=|.-.++ .+...
T Consensus 179 ~li~aQse~D~~Rf~~LGa~~v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~~-r~v~iaaSTH~GEeei~l~~~~~l~~~ 257 (419)
T COG1519 179 DLILAQSEEDAQRFRSLGAKPVVVTGNLKFDIEPPPQLAAELAALRRQLGGH-RPVWVAASTHEGEEEIILDAHQALKKQ 257 (419)
T ss_pred ceeeecCHHHHHHHHhcCCcceEEecceeecCCCChhhHHHHHHHHHhcCCC-CceEEEecCCCchHHHHHHHHHHHHhh
Confidence 00000000 00000 0111000000000000001 11111122221111 3445555666554443333 23332
Q ss_pred CCCCeEEecCCCCCCCCCcccChHHHHHHHHHHHhCCCeEEEEEcCCCCcccccccCCCcEEeeccchhh-hccccCc--
Q 044218 243 FSFPVLLAQFCTSHWEAFYSVSSAQMDEIIAGIRNSGVRYLWVTRGDTSRFKDGHADDRGIVVPWCDQLR-VLCHASI-- 319 (436)
Q Consensus 243 ~~~~~~~vGpl~~~wGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~pq~~-ll~~~~~-- 319 (436)
++...+.+=| .=++.+..+.+-+++.|..+.-...++ ... ...++.+.+-+-.+. ++.-+++
T Consensus 258 ~~~~llIlVP----------RHpERf~~v~~l~~~~gl~~~~rS~~~---~~~--~~tdV~l~DtmGEL~l~y~~adiAF 322 (419)
T COG1519 258 FPNLLLILVP----------RHPERFKAVENLLKRKGLSVTRRSQGD---PPF--SDTDVLLGDTMGELGLLYGIADIAF 322 (419)
T ss_pred CCCceEEEec----------CChhhHHHHHHHHHHcCCeEEeecCCC---CCC--CCCcEEEEecHhHHHHHHhhccEEE
Confidence 3322222222 345667777777777776654332221 111 134788888776554 4444443
Q ss_pred --ceeeccCCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 320 --GGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 320 --~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
|-++.+||.| ..|++++|+|+|.=|....|..-++++... |.|+.++ +++.+.+++..+++|
T Consensus 323 VGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~-ga~~~v~----------~~~~l~~~v~~l~~~ 386 (419)
T COG1519 323 VGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQA-GAGLQVE----------DADLLAKAVELLLAD 386 (419)
T ss_pred ECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhc-CCeEEEC----------CHHHHHHHHHHhcCC
Confidence 2245688886 789999999999999999999999999988 9998887 466777788777766
No 88
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.24 E-value=0.00014 Score=69.56 Aligned_cols=90 Identities=11% Similarity=0.132 Sum_probs=61.1
Q ss_pred cCCCcEEeeccchhh---hccccCcceeecc----CCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecC
Q 044218 298 ADDRGIVVPWCDQLR---VLCHASIGGFWTH----CGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKP 370 (436)
Q Consensus 298 ~~~~~~v~~~~pq~~---ll~~~~~~~~I~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~ 370 (436)
.++++.+.+++|+.+ ++..+++ +|.- +..+++.||+++|+|+|+.... .....+. ..|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~---~~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAG---DAALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----Cccceec---CceeeeCC-
Confidence 367899999998653 6777887 5532 3345899999999999986542 2222233 23545554
Q ss_pred CccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHH
Q 044218 371 EIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQ 409 (436)
Q Consensus 371 ~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~ 409 (436)
-+.+++.++|.+++++ +..++...+-+
T Consensus 321 -------~~~~~~~~~i~~l~~~-----~~~~~~~~~~~ 347 (365)
T cd03809 321 -------LDPEALAAAIERLLED-----PALREELRERG 347 (365)
T ss_pred -------CCHHHHHHHHHHHhcC-----HHHHHHHHHHH
Confidence 3789999999999887 66555444433
No 89
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.22 E-value=0.0056 Score=63.78 Aligned_cols=80 Identities=14% Similarity=0.136 Sum_probs=52.6
Q ss_pred CCCcEEeecc-ch---hhhccc-cC-cceeecc---CC-cchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEee
Q 044218 299 DDRGIVVPWC-DQ---LRVLCH-AS-IGGFWTH---CG-LNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVK 368 (436)
Q Consensus 299 ~~~~~v~~~~-pq---~~ll~~-~~-~~~~I~h---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~ 368 (436)
.+++++.++. +. ..++.+ ++ .++||.= =| -.++.||+++|+|+|+.-. -.....+++- ..|..++
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV~dg-~tGfLVd 692 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEIIQDG-VSGFHID 692 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEeC
Confidence 4678877764 32 235543 22 1236632 22 3488999999999998544 3455666644 5698888
Q ss_pred cCCccccCccCHHHHHHHHHHHh
Q 044218 369 KPEIASERLVTRDEITELVKRFM 391 (436)
Q Consensus 369 ~~~~~~~~~~t~~~l~~~i~~ll 391 (436)
+ -+++.+.++|.+++
T Consensus 693 p--------~D~eaLA~aL~~ll 707 (784)
T TIGR02470 693 P--------YHGEEAAEKIVDFF 707 (784)
T ss_pred C--------CCHHHHHHHHHHHH
Confidence 7 47899999998876
No 90
>PLN02275 transferase, transferring glycosyl groups
Probab=98.07 E-value=0.00083 Score=65.04 Aligned_cols=121 Identities=11% Similarity=-0.031 Sum_probs=68.2
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCc-EEEEEecccccc---ccCCCCCCCCeeEEecCCCCCCCCCCCCCH
Q 044218 11 TSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDI-LITFVVTEEWLG---FIGSQSKPHNIRFRTLPNTIPSEHGRANDF 86 (436)
Q Consensus 11 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh-~Vt~~~~~~~~~---~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~ 86 (436)
+.+.++.++..|-.|.-..+..++..|++ +|| +|++++.+.... ..+.. ++.++.++. +.........
T Consensus 2 ~~~~~~~~~~~~~~g~~~r~~~~~~~l~~--~~~~~v~vi~~~~~~~~~~~~~~~----~v~v~r~~~--~~~~~~~~~~ 73 (371)
T PLN02275 2 GRRGRAAVVVLGDFGRSPRMQYHALSLAR--QASFQVDVVAYGGSEPIPALLNHP----SIHIHLMVQ--PRLLQRLPRV 73 (371)
T ss_pred CCccEEEEEEecCCCCCHHHHHHHHHHHh--cCCceEEEEEecCCCCCHHHhcCC----cEEEEECCC--cccccccccc
Confidence 34566777777999999999999999999 885 799998654321 12222 688888764 1111111112
Q ss_pred HH---HHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcC-Cc----chHHHHhHhcCCCeEEEcc
Q 044218 87 AG---FLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADT-YL----PWVVDVGNRRNIPVASLWT 148 (436)
Q Consensus 87 ~~---~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~-~~----~~~~~~A~~~gIP~v~~~~ 148 (436)
.. ++..........+.-+.. +.. +||+|++.. .. ..+..+++..++|+++.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h 134 (371)
T PLN02275 74 LYALALLLKVAIQFLMLLWFLCV--KIP-------RPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWH 134 (371)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh--hCC-------CCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcC
Confidence 22 111111111111111111 122 899998753 22 1344567788999988644
No 91
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.04 E-value=0.0012 Score=63.94 Aligned_cols=112 Identities=21% Similarity=0.226 Sum_probs=69.7
Q ss_pred CCCcEEeecc--ch---hhhccccCcceeeccC---C-cchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeec
Q 044218 299 DDRGIVVPWC--DQ---LRVLCHASIGGFWTHC---G-LNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKK 369 (436)
Q Consensus 299 ~~~~~v~~~~--pq---~~ll~~~~~~~~I~hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~ 369 (436)
.+++.+.++. ++ ..++..+++ ++.-. | ..++.||+++|+|+|+.... .....+.+. ..|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC-
Confidence 4577888776 33 246777777 87543 2 34899999999999987543 233445433 5565443
Q ss_pred CCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044218 370 PEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDISR 435 (436)
Q Consensus 370 ~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 435 (436)
+.+.+..+|.+++++ ++.++ ++++..++.+.+.-+-...++++++.+.+
T Consensus 323 ---------~~~~~a~~i~~ll~~-----~~~~~---~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 323 ---------TVEEAAVRILYLLRD-----PELRR---KMGANAREHVRENFLITRHLKDYLYLISK 371 (372)
T ss_pred ---------CcHHHHHHHHHHHcC-----HHHHH---HHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 456777899999987 55443 23333333333356777777777766653
No 92
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.96 E-value=0.0031 Score=65.37 Aligned_cols=114 Identities=18% Similarity=0.243 Sum_probs=71.9
Q ss_pred CCCcEEeeccchhh-hccccCcceeec---cCC-cchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCcc
Q 044218 299 DDRGIVVPWCDQLR-VLCHASIGGFWT---HCG-LNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIA 373 (436)
Q Consensus 299 ~~~~~v~~~~pq~~-ll~~~~~~~~I~---hgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~ 373 (436)
.+++++.+|.++.. +|..+++ +|. +.| -+++.||+++|+|+|+.... .....+++. ..|+.++. .+
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~-~d- 643 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPA-DT- 643 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCC-CC-
Confidence 47899989987644 8888888 664 344 45888999999999997642 345556544 46888876 32
Q ss_pred ccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 044218 374 SERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDI 433 (436)
Q Consensus 374 ~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 433 (436)
.+.+++.+++.+++.+.. +++.+++++++. +.+.-+....++++++..
T Consensus 644 ----~~~~~La~aL~~ll~~l~-~~~~l~~~ar~~-------a~~~FS~~~~~~~~~~lY 691 (694)
T PRK15179 644 ----VTAPDVAEALARIHDMCA-ADPGIARKAADW-------ASARFSLNQMIASTVRCY 691 (694)
T ss_pred ----CChHHHHHHHHHHHhChh-ccHHHHHHHHHH-------HHHhCCHHHHHHHHHHHh
Confidence 466777777777664310 004555443322 223456666666665543
No 93
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.92 E-value=0.0023 Score=57.87 Aligned_cols=294 Identities=13% Similarity=0.112 Sum_probs=151.3
Q ss_pred CccChHHHHHHHHHHHhCCCCcEEEEEecccc--ccccCCCCCCCCeeEEecCCCCCCCCCCCCCHHHHHHHHHHhchHH
Q 044218 23 GRGHVNPMMNICKLLVSRQPDILITFVVTEEW--LGFIGSQSKPHNIRFRTLPNTIPSEHGRANDFAGFLEAVFTKMEAP 100 (436)
Q Consensus 23 ~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~--~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (436)
-.-|+.-+-.|-++|.+ +||+|.+-+-+.. .+.++.. ||.+..+.... ...+.+.+.+..++ ...
T Consensus 9 n~~hvhfFk~lI~elek--kG~ev~iT~rd~~~v~~LLd~y----gf~~~~Igk~g------~~tl~~Kl~~~~eR-~~~ 75 (346)
T COG1817 9 NPPHVHFFKNLIWELEK--KGHEVLITCRDFGVVTELLDLY----GFPYKSIGKHG------GVTLKEKLLESAER-VYK 75 (346)
T ss_pred CcchhhHHHHHHHHHHh--CCeEEEEEEeecCcHHHHHHHh----CCCeEeecccC------CccHHHHHHHHHHH-HHH
Confidence 34578888899999999 9999998776533 2445666 88888876321 12233222222111 122
Q ss_pred HHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHHhhHHHHhcCCCCCCCCCCCCcc
Q 044218 101 FEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERNGHFPFDLSEKGDEL 180 (436)
Q Consensus 101 ~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 180 (436)
+.++..+. +||+.+. .+++....+|.-+|+|.+++..+...... .+...|+..
T Consensus 76 L~ki~~~~----------kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA~~q---------nkl~~Pla~------- 128 (346)
T COG1817 76 LSKIIAEF----------KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHAEAQ---------NKLTLPLAD------- 128 (346)
T ss_pred HHHHHhhc----------CCceEee-cCCcchhhHHhhcCCceEEecCChhHHHH---------hhcchhhhh-------
Confidence 34444444 8999999 67888999999999999998765543221 111222110
Q ss_pred cccCCCCCCCCCCCCCcccccCCchHHHHHHHhhcccccceEE--EEcch-hhhhHHHHHHHhhcCCCCeEEecCCCCCC
Q 044218 181 VDCIPGLEPTKLADFPTIFHGAGRKILHAALQSASKVSKAQYL--LLSSV-YKLEAKTIDALKEEFSFPVLLAQFCTSHW 257 (436)
Q Consensus 181 ~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~l~~~~~~~~~~~~~~~~~~vGpl~~~w 257 (436)
....|... ....+.++-.+.+ .+....++ +.+.. +..+++.++.+.=....+.....|. +|
T Consensus 129 ~ii~P~~~--~~~~~~~~G~~p~------------~i~~~~giae~~~v~~f~pd~evlkeLgl~~~~~yIVmRpe--~~ 192 (346)
T COG1817 129 VIITPEAI--DEEELLDFGADPN------------KISGYNGIAELANVYGFVPDPEVLKELGLEEGETYIVMRPE--PW 192 (346)
T ss_pred heeccccc--chHHHHHhCCCcc------------ceecccceeEEeecccCCCCHHHHHHcCCCCCCceEEEeec--cc
Confidence 00111110 0000000000000 00000000 11111 2234444443332122345555554 56
Q ss_pred CCCcc---cChHHHHHHHHHHHhCCCeEEEEEcCC--C-CcccccccCCCcEEe-eccchhhhccccCcceeeccCCcch
Q 044218 258 EAFYS---VSSAQMDEIIAGIRNSGVRYLWVTRGD--T-SRFKDGHADDRGIVV-PWCDQLRVLCHASIGGFWTHCGLNS 330 (436)
Q Consensus 258 GS~~~---~~~~~~~~l~~al~~~~~~~i~~~~~~--~-~~~~~~~~~~~~~v~-~~~pq~~ll~~~~~~~~I~hgG~~s 330 (436)
|+..- ...+.+..+++-+.+.| ++..... + +.++.. +|+.+- +-++..+||-++++ +|+-||. -
T Consensus 193 ~A~y~~g~~~~~~~~~li~~l~k~g---iV~ipr~~~~~eife~~---~n~i~pk~~vD~l~Llyya~l--vig~ggT-M 263 (346)
T COG1817 193 GAHYDNGDRGISVLPDLIKELKKYG---IVLIPREKEQAEIFEGY---RNIIIPKKAVDTLSLLYYATL--VIGAGGT-M 263 (346)
T ss_pred cceeeccccchhhHHHHHHHHHhCc---EEEecCchhHHHHHhhh---ccccCCcccccHHHHHhhhhe--eecCCch-H
Confidence 66432 23345778888898888 2333322 1 112211 222222 44556779989999 8876663 4
Q ss_pred HHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 331 TIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 331 ~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
-.||...|+|.|.+= .+.-...-+.+. ..|+.... -++.++.+.+.+.|.+
T Consensus 264 arEaAlLGtpaIs~~-pGkll~vdk~li---e~G~~~~s--------~~~~~~~~~a~~~l~~ 314 (346)
T COG1817 264 AREAALLGTPAISCY-PGKLLAVDKYLI---EKGLLYHS--------TDEIAIVEYAVRNLKY 314 (346)
T ss_pred HHHHHHhCCceEEec-CCccccccHHHH---hcCceeec--------CCHHHHHHHHHHHhhc
Confidence 459999999998764 222122223444 34655554 2444555555566644
No 94
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.92 E-value=0.0023 Score=64.09 Aligned_cols=78 Identities=13% Similarity=0.176 Sum_probs=51.0
Q ss_pred hhhccccCcceeeccCCcchHHHHHhcCCcEeec-cccccchhhHHHHhhh----hc-----eeeEeecCCcc-ccCccC
Q 044218 311 LRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTF-PLFWDQVPNSKQIVQD----WK-----TGWRVKKPEIA-SERLVT 379 (436)
Q Consensus 311 ~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~~~~~----lG-----~G~~~~~~~~~-~~~~~t 379 (436)
.+++..|++ .+.-+|. .+.|+..+|+|||++ -...=-+.-|+++.+. .+ +|..+-+ +-- ++...|
T Consensus 483 ~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvP-EllqgQ~~~t 558 (608)
T PRK01021 483 YELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFP-EFIGGKKDFQ 558 (608)
T ss_pred HHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcch-hhcCCcccCC
Confidence 468888888 9998986 678999999999874 3333334556666530 01 1222222 111 135689
Q ss_pred HHHHHHHHHHHhcc
Q 044218 380 RDEITELVKRFMDL 393 (436)
Q Consensus 380 ~~~l~~~i~~ll~~ 393 (436)
++.|.+++ ++|.|
T Consensus 559 pe~La~~l-~lL~d 571 (608)
T PRK01021 559 PEEVAAAL-DILKT 571 (608)
T ss_pred HHHHHHHH-HHhcC
Confidence 99999997 77776
No 95
>PLN02316 synthase/transferase
Probab=97.90 E-value=0.048 Score=58.69 Aligned_cols=117 Identities=9% Similarity=0.047 Sum_probs=70.2
Q ss_pred CCCcEEeeccchh---hhccccCcceeeccC---C-cchHHHHHhcCCcEeeccccc--cchhh-------HHHHhhhhc
Q 044218 299 DDRGIVVPWCDQL---RVLCHASIGGFWTHC---G-LNSTIESLYAGVPMLTFPLFW--DQVPN-------SKQIVQDWK 362 (436)
Q Consensus 299 ~~~~~v~~~~pq~---~ll~~~~~~~~I~hg---G-~~s~~eal~~GvP~l~~P~~~--DQ~~n-------a~~~~~~lG 362 (436)
++++.+....+.. .+++.+++ |+.-. | -.+.+||+++|+|.|+....+ |.-.. +...... +
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~ 975 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-P 975 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-C
Confidence 4567766444543 47877888 87422 2 348899999999888765421 22111 1100001 4
Q ss_pred eeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 044218 363 TGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDI 433 (436)
Q Consensus 363 ~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 433 (436)
.|..++. .+++.|..+|.++|+. |.+..+.+++..++++...-|-....++.++..
T Consensus 976 tGflf~~--------~d~~aLa~AL~raL~~-------~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY 1031 (1036)
T PLN02316 976 NGFSFDG--------ADAAGVDYALNRAISA-------WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELY 1031 (1036)
T ss_pred ceEEeCC--------CCHHHHHHHHHHHHhh-------hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 6877776 5899999999999864 334444455555555555555555555555444
No 96
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=97.87 E-value=7e-05 Score=59.81 Aligned_cols=97 Identities=15% Similarity=0.206 Sum_probs=65.9
Q ss_pred HHHHHHHhCCCe-EEEEEcCCCCcccccc---c-CCCcEE--eeccch-hhhccccCcceeeccCCcchHHHHHhcCCcE
Q 044218 270 EIIAGIRNSGVR-YLWVTRGDTSRFKDGH---A-DDRGIV--VPWCDQ-LRVLCHASIGGFWTHCGLNSTIESLYAGVPM 341 (436)
Q Consensus 270 ~l~~al~~~~~~-~i~~~~~~~~~~~~~~---~-~~~~~v--~~~~pq-~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~ 341 (436)
+....|.+.|+. .|+-.|.+...+.+.. . .+...+ .+|-|- .+..+.+++ +|.|+|+||+.|.|..|+|.
T Consensus 26 ~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~Adl--VIsHAGaGS~letL~l~KPl 103 (170)
T KOG3349|consen 26 EFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRSADL--VISHAGAGSCLETLRLGKPL 103 (170)
T ss_pred HHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhhccE--EEecCCcchHHHHHHcCCCE
Confidence 445667778864 5555555422222210 0 122233 367775 446677888 99999999999999999999
Q ss_pred eeccc----cccchhhHHHHhhhhceeeEeec
Q 044218 342 LTFPL----FWDQVPNSKQIVQDWKTGWRVKK 369 (436)
Q Consensus 342 l~~P~----~~DQ~~na~~~~~~lG~G~~~~~ 369 (436)
|+++- ...|-.-|..+++. |-=..-.+
T Consensus 104 ivVvNd~LMDNHQ~ELA~qL~~e-gyL~~C~p 134 (170)
T KOG3349|consen 104 IVVVNDSLMDNHQLELAKQLAEE-GYLYYCTP 134 (170)
T ss_pred EEEeChHhhhhHHHHHHHHHHhc-CcEEEeec
Confidence 99995 56899999999966 65544444
No 97
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.87 E-value=0.0065 Score=60.91 Aligned_cols=146 Identities=10% Similarity=0.070 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCC---Ccc---cccccCCCcEEeeccchh---hhccccCcceeecc---CCcc-hHH
Q 044218 266 AQMDEIIAGIRNSGVRYLWVTRGDT---SRF---KDGHADDRGIVVPWCDQL---RVLCHASIGGFWTH---CGLN-STI 332 (436)
Q Consensus 266 ~~~~~l~~al~~~~~~~i~~~~~~~---~~~---~~~~~~~~~~v~~~~pq~---~ll~~~~~~~~I~h---gG~~-s~~ 332 (436)
+.+...+..+.+.+.++++.-.+++ +.+ ... .+.++.+....++. .++..+++ ++.= -|.| +..
T Consensus 307 ~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~-~~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~l 383 (473)
T TIGR02095 307 DLLLAALPELLELGGQLVVLGTGDPELEEALRELAER-YPGNVRVIIGYDEALAHLIYAGADF--ILMPSRFEPCGLTQL 383 (473)
T ss_pred HHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHH-CCCcEEEEEcCCHHHHHHHHHhCCE--EEeCCCcCCcHHHHH
Confidence 3333444444444677776544432 111 122 35567666544543 37777887 7742 2444 788
Q ss_pred HHHhcCCcEeeccccc--cchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhc----cCccchHHHHHHHH
Q 044218 333 ESLYAGVPMLTFPLFW--DQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMD----LNSDERKEMSKRAR 406 (436)
Q Consensus 333 eal~~GvP~l~~P~~~--DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~----~~~~~~~~~~~~a~ 406 (436)
||+++|+|.|+....+ |.-.+...-... +.|..++. .+++++.++|.+++. + ++.+ +
T Consensus 384 EAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~~--------~d~~~la~~i~~~l~~~~~~-----~~~~---~ 446 (473)
T TIGR02095 384 YAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFEE--------YDPGALLAALSRALRLYRQD-----PSLW---E 446 (473)
T ss_pred HHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeCC--------CCHHHHHHHHHHHHHHHhcC-----HHHH---H
Confidence 9999999999876532 222111000122 67888776 488999999999886 3 3322 2
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044218 407 EVQEICREAAAENGSSITNLDAFLKDIS 434 (436)
Q Consensus 407 ~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 434 (436)
++++ ++....-|-....+++++..+
T Consensus 447 ~~~~---~~~~~~fsw~~~a~~~~~~Y~ 471 (473)
T TIGR02095 447 ALQK---NAMSQDFSWDKSAKQYVELYR 471 (473)
T ss_pred HHHH---HHhccCCCcHHHHHHHHHHHH
Confidence 2222 222234566666666666554
No 98
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.86 E-value=0.0043 Score=61.11 Aligned_cols=79 Identities=24% Similarity=0.215 Sum_probs=54.0
Q ss_pred CCCcEEeeccchhh---hccccCcceeec-----cCCcchHHHHHhcCCcEeeccccccchhhHHHHh---hhhceeeEe
Q 044218 299 DDRGIVVPWCDQLR---VLCHASIGGFWT-----HCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIV---QDWKTGWRV 367 (436)
Q Consensus 299 ~~~~~v~~~~pq~~---ll~~~~~~~~I~-----hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~---~~lG~G~~~ 367 (436)
.+++.+.+++|+.+ +|..+++ +|+ |-| .++.||+++|+|.|+.-..+. ....++ +. +.|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fg-i~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g-~~G~l~ 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFG-IGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGG-PTGFLA 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcc-cHHHHHHHcCCcEEEEcCCCC---chheeeccCCC-CceEEe
Confidence 46899999988654 7788888 664 223 388999999999998653221 111121 23 456543
Q ss_pred ecCCccccCccCHHHHHHHHHHHhccC
Q 044218 368 KKPEIASERLVTRDEITELVKRFMDLN 394 (436)
Q Consensus 368 ~~~~~~~~~~~t~~~l~~~i~~ll~~~ 394 (436)
. +++++.++|.++++++
T Consensus 377 -~---------d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 -S---------TAEEYAEAIEKILSLS 393 (419)
T ss_pred -C---------CHHHHHHHHHHHHhCC
Confidence 3 7899999999999863
No 99
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=97.85 E-value=0.00074 Score=65.07 Aligned_cols=108 Identities=15% Similarity=0.219 Sum_probs=70.2
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEEcCC-CCc------cccccc--CCCcEEeeccc---hhhhccccCcceeeccCCcchH
Q 044218 264 SSAQMDEIIAGIRNSGVRYLWVTRGD-TSR------FKDGHA--DDRGIVVPWCD---QLRVLCHASIGGFWTHCGLNST 331 (436)
Q Consensus 264 ~~~~~~~l~~al~~~~~~~i~~~~~~-~~~------~~~~~~--~~~~~v~~~~p---q~~ll~~~~~~~~I~hgG~~s~ 331 (436)
..+.+..+++++.+.+.++++..... +.. +... . .+++.+.+.++ ...++.++++ +|+.++.+-
T Consensus 218 ~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~-~~~~~~v~l~~~l~~~~~l~Ll~~a~~--vitdSSggi- 293 (365)
T TIGR03568 218 AEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEY-VNEHPNFRLFKSLGQERYLSLLKNADA--VIGNSSSGI- 293 (365)
T ss_pred chHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHH-hcCCCCEEEECCCChHHHHHHHHhCCE--EEEcChhHH-
Confidence 45678889999988876655554332 111 1111 1 35788886555 4558899999 999886555
Q ss_pred HHHHhcCCcEeeccccccchhhHHHHhhhhceeeE-eecCCccccCccCHHHHHHHHHHHhc
Q 044218 332 IESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWR-VKKPEIASERLVTRDEITELVKRFMD 392 (436)
Q Consensus 332 ~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~-~~~~~~~~~~~~t~~~l~~~i~~ll~ 392 (436)
.||...|+|.|.+- +-+ .-+ +. |..+. +.. ++++|.+++.++++
T Consensus 294 ~EA~~lg~Pvv~l~---~R~---e~~-~~-g~nvl~vg~---------~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 294 IEAPSFGVPTINIG---TRQ---KGR-LR-ADSVIDVDP---------DKEEIVKAIEKLLD 338 (365)
T ss_pred HhhhhcCCCEEeec---CCc---hhh-hh-cCeEEEeCC---------CHHHHHHHHHHHhC
Confidence 99999999999775 211 111 13 43322 443 88999999999653
No 100
>PLN00142 sucrose synthase
Probab=97.85 E-value=0.014 Score=61.04 Aligned_cols=77 Identities=13% Similarity=0.189 Sum_probs=49.0
Q ss_pred CCcEEeec----cchhhhcc----ccCcceeecc---CCcc-hHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEe
Q 044218 300 DRGIVVPW----CDQLRVLC----HASIGGFWTH---CGLN-STIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRV 367 (436)
Q Consensus 300 ~~~~v~~~----~pq~~ll~----~~~~~~~I~h---gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~ 367 (436)
+++.+.+. .+..+++. .+++ ||.= =|.| ++.||+++|+|+|+... ......+++- ..|..+
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~dG-~tG~LV 714 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEIIVDG-VSGFHI 714 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEe
Confidence 56666543 33334443 2234 6642 3444 89999999999998643 3455566643 469888
Q ss_pred ecCCccccCccCHHHHHHHHHHHh
Q 044218 368 KKPEIASERLVTRDEITELVKRFM 391 (436)
Q Consensus 368 ~~~~~~~~~~~t~~~l~~~i~~ll 391 (436)
++ -+++++.++|.+++
T Consensus 715 ~P--------~D~eaLA~aI~~lL 730 (815)
T PLN00142 715 DP--------YHGDEAANKIADFF 730 (815)
T ss_pred CC--------CCHHHHHHHHHHHH
Confidence 87 47888888887654
No 101
>PLN02846 digalactosyldiacylglycerol synthase
Probab=97.83 E-value=0.0042 Score=61.18 Aligned_cols=72 Identities=10% Similarity=-0.063 Sum_probs=49.8
Q ss_pred EeeccchhhhccccCcceeeccC----CcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccC
Q 044218 304 VVPWCDQLRVLCHASIGGFWTHC----GLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVT 379 (436)
Q Consensus 304 v~~~~pq~~ll~~~~~~~~I~hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t 379 (436)
+.++.+..+++...++ ||.=+ =.+++.||+++|+|+|+.-... | ..+.+. +-|... . +
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~-~---------~ 349 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTY-D---------D 349 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEec-C---------C
Confidence 3466565668888887 88653 3468889999999999986543 2 333322 344333 3 6
Q ss_pred HHHHHHHHHHHhcc
Q 044218 380 RDEITELVKRFMDL 393 (436)
Q Consensus 380 ~~~l~~~i~~ll~~ 393 (436)
.+++.+++.++|++
T Consensus 350 ~~~~a~ai~~~l~~ 363 (462)
T PLN02846 350 GKGFVRATLKALAE 363 (462)
T ss_pred HHHHHHHHHHHHcc
Confidence 78999999999975
No 102
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.80 E-value=0.018 Score=57.59 Aligned_cols=106 Identities=15% Similarity=0.211 Sum_probs=62.6
Q ss_pred HHhCCCeEEEEEcCCC---Ccc---cccccCCCcEE-eeccchh--hhccccCcceeec---cCCcc-hHHHHHhcCCcE
Q 044218 275 IRNSGVRYLWVTRGDT---SRF---KDGHADDRGIV-VPWCDQL--RVLCHASIGGFWT---HCGLN-STIESLYAGVPM 341 (436)
Q Consensus 275 l~~~~~~~i~~~~~~~---~~~---~~~~~~~~~~v-~~~~pq~--~ll~~~~~~~~I~---hgG~~-s~~eal~~GvP~ 341 (436)
+.+.+.++++.-+++. +.+ ... .+.++.+ .+|-.+. .++..+++ +|. +-|+| +..||+++|+|.
T Consensus 307 l~~~~~~lvivG~g~~~~~~~l~~l~~~-~~~~v~~~~g~~~~~~~~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~ 383 (466)
T PRK00654 307 LLEQGGQLVLLGTGDPELEEAFRALAAR-YPGKVGVQIGYDEALAHRIYAGADM--FLMPSRFEPCGLTQLYALRYGTLP 383 (466)
T ss_pred HHhcCCEEEEEecCcHHHHHHHHHHHHH-CCCcEEEEEeCCHHHHHHHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCE
Confidence 3334677777644332 111 122 3456554 4663332 46788888 774 23444 788999999999
Q ss_pred eecccc--ccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhc
Q 044218 342 LTFPLF--WDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMD 392 (436)
Q Consensus 342 l~~P~~--~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~ 392 (436)
|+.... .|.-.+...-.+. +.|..++. -+++++.++|.++++
T Consensus 384 V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~--------~d~~~la~~i~~~l~ 427 (466)
T PRK00654 384 IVRRTGGLADTVIDYNPEDGE-ATGFVFDD--------FNAEDLLRALRRALE 427 (466)
T ss_pred EEeCCCCccceeecCCCCCCC-CceEEeCC--------CCHHHHHHHHHHHHH
Confidence 987542 2321111111223 67888876 488999999999886
No 103
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.79 E-value=0.00074 Score=65.61 Aligned_cols=113 Identities=18% Similarity=0.184 Sum_probs=75.7
Q ss_pred CCCcEEeeccchhh---hccccCcceeecc----CCc-chHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecC
Q 044218 299 DDRGIVVPWCDQLR---VLCHASIGGFWTH----CGL-NSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKP 370 (436)
Q Consensus 299 ~~~~~v~~~~pq~~---ll~~~~~~~~I~h----gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~ 370 (436)
..++.+.+++|+.+ +++.+++ +|.- -|. .++.||+++|+|+|+.... .+...+++. ..|..+..
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~~- 327 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLAE- 327 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEeC-
Confidence 46788889998543 6888888 7753 332 5778999999999997652 344555544 56765532
Q ss_pred CccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044218 371 EIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDIS 434 (436)
Q Consensus 371 ~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 434 (436)
. .+.+++.++|.+++++ +..+ ++++..++.+.+.-+-....+++.+.++
T Consensus 328 ~------~d~~~la~~I~~ll~d-----~~~~----~~~~~ar~~~~~~fsw~~~a~~~~~~l~ 376 (380)
T PRK15484 328 P------MTSDSIISDINRTLAD-----PELT----QIAEQAKDFVFSKYSWEGVTQRFEEQIH 376 (380)
T ss_pred C------CCHHHHHHHHHHHHcC-----HHHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2 3899999999999988 5543 3344444333345666666667666654
No 104
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.79 E-value=0.0062 Score=58.27 Aligned_cols=102 Identities=20% Similarity=0.175 Sum_probs=64.2
Q ss_pred hhhhccccCcceeeccCCcchHHHHHhcCCcEeecc-ccccchhhHHHHhhhhce-e-------eEeecCCccccCccCH
Q 044218 310 QLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFP-LFWDQVPNSKQIVQDWKT-G-------WRVKKPEIASERLVTR 380 (436)
Q Consensus 310 q~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P-~~~DQ~~na~~~~~~lG~-G-------~~~~~~~~~~~~~~t~ 380 (436)
-.+++..+++ .+.-+|. .+.|+..+|+|||++= ...=.+..|+++.+. .. | ..+-+| .-+...|+
T Consensus 254 ~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~-~~isL~Niia~~~v~PE--liQ~~~~~ 327 (373)
T PF02684_consen 254 SYDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVKV-KYISLPNIIAGREVVPE--LIQEDATP 327 (373)
T ss_pred hHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcC-CEeechhhhcCCCcchh--hhcccCCH
Confidence 3448888888 8888885 6789999999997653 333445566666532 22 1 111110 12356899
Q ss_pred HHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCCh
Q 044218 381 DEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSS 422 (436)
Q Consensus 381 ~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~ 422 (436)
+.|.+++.++|+| +..++..+...+.+++....|.++
T Consensus 328 ~~i~~~~~~ll~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 364 (373)
T PF02684_consen 328 ENIAAELLELLEN-----PEKRKKQKELFREIRQLLGPGASS 364 (373)
T ss_pred HHHHHHHHHHhcC-----HHHHHHHHHHHHHHHHhhhhccCC
Confidence 9999999999988 544555555555555543344443
No 105
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.78 E-value=0.00044 Score=67.78 Aligned_cols=113 Identities=15% Similarity=0.190 Sum_probs=78.8
Q ss_pred CCCcEEeeccchhh---hccccCcceeecc---------CCc-chHHHHHhcCCcEeeccccccchhhHHHHhhhhceee
Q 044218 299 DDRGIVVPWCDQLR---VLCHASIGGFWTH---------CGL-NSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGW 365 (436)
Q Consensus 299 ~~~~~v~~~~pq~~---ll~~~~~~~~I~h---------gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~ 365 (436)
.+++.+.+|+|+.+ ++..+++ +|.- -|. +++.||+++|+|+|+.... .....+++. ..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-CceE
Confidence 46799999999754 6788888 6642 244 5689999999999987543 344556544 5787
Q ss_pred EeecCCccccCccCHHHHHHHHHHHhc-cCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044218 366 RVKKPEIASERLVTRDEITELVKRFMD-LNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDIS 434 (436)
Q Consensus 366 ~~~~~~~~~~~~~t~~~l~~~i~~ll~-~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 434 (436)
.++. -+.+++.++|.++++ + ++.+ +++++..++.+.+.-+.....+++.+.++
T Consensus 351 lv~~--------~d~~~la~ai~~l~~~d-----~~~~---~~~~~~ar~~v~~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 351 LVPE--------NDAQALAQRLAAFSQLD-----TDEL---APVVKRAREKVETDFNQQVINRELASLLQ 404 (406)
T ss_pred EeCC--------CCHHHHHHHHHHHHhCC-----HHHH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 7775 389999999999998 6 4433 23444444444446677777777777664
No 106
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.70 E-value=0.0021 Score=60.50 Aligned_cols=77 Identities=16% Similarity=0.187 Sum_probs=63.4
Q ss_pred CCcEEe---eccchhhhccccCcceeeccCCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccC
Q 044218 300 DRGIVV---PWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASER 376 (436)
Q Consensus 300 ~~~~v~---~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~ 376 (436)
+++.+. +|.+...++.++-+ ++|-.| |-.-||-..|+|.+++=..-++|. .++ . |.-+.+..
T Consensus 262 ~~v~li~pl~~~~f~~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~TERPE---~v~-a-gt~~lvg~------- 326 (383)
T COG0381 262 ERVKLIDPLGYLDFHNLMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTTERPE---GVE-A-GTNILVGT------- 326 (383)
T ss_pred CcEEEeCCcchHHHHHHHHhceE--EEecCC-chhhhHHhcCCcEEeeccCCCCcc---cee-c-CceEEeCc-------
Confidence 357765 67778889999988 999998 466799999999999999999987 343 5 66666665
Q ss_pred ccCHHHHHHHHHHHhcc
Q 044218 377 LVTRDEITELVKRFMDL 393 (436)
Q Consensus 377 ~~t~~~l~~~i~~ll~~ 393 (436)
+.+.|.+++.+++++
T Consensus 327 --~~~~i~~~~~~ll~~ 341 (383)
T COG0381 327 --DEENILDAATELLED 341 (383)
T ss_pred --cHHHHHHHHHHHhhC
Confidence 889999999999988
No 107
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.64 E-value=0.00021 Score=68.55 Aligned_cols=112 Identities=16% Similarity=0.254 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCC-CcccccccCCCcEEeeccchh---hhccccCcceee--ccCCc-chHHHHHhcC
Q 044218 266 AQMDEIIAGIRNSGVRYLWVTRGDT-SRFKDGHADDRGIVVPWCDQL---RVLCHASIGGFW--THCGL-NSTIESLYAG 338 (436)
Q Consensus 266 ~~~~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~~~~~~v~~~~pq~---~ll~~~~~~~~I--~hgG~-~s~~eal~~G 338 (436)
.....++++++..+.+++++-++.. +.+... ..+|+.+.+++|+. .++..+++ +| +.-|. .++.||+++|
T Consensus 208 K~~~~li~a~~~~~~~l~ivG~g~~~~~l~~~-~~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~e~~g~~~~Eama~G 284 (351)
T cd03804 208 KRIDLAIEAFNKLGKRLVVIGDGPELDRLRAK-AGPNVTFLGRVSDEELRDLYARARA--FLFPAEEDFGIVPVEAMASG 284 (351)
T ss_pred cChHHHHHHHHHCCCcEEEEECChhHHHHHhh-cCCCEEEecCCCHHHHHHHHHhCCE--EEECCcCCCCchHHHHHHcC
Confidence 3356677778888877766554432 222223 46899999999974 37888888 55 33343 3578999999
Q ss_pred CcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 339 VPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 339 vP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
+|+|+....+ ....+++. +.|..++. -+.+++.++|.+++++
T Consensus 285 ~Pvi~~~~~~----~~e~i~~~-~~G~~~~~--------~~~~~la~~i~~l~~~ 326 (351)
T cd03804 285 TPVIAYGKGG----ALETVIDG-VTGILFEE--------QTVESLAAAVERFEKN 326 (351)
T ss_pred CCEEEeCCCC----CcceeeCC-CCEEEeCC--------CCHHHHHHHHHHHHhC
Confidence 9999976533 34445544 67888876 3789999999999987
No 108
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.62 E-value=0.018 Score=57.77 Aligned_cols=115 Identities=14% Similarity=0.142 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCC---cc---cccccCCCcEEe-eccchh--hhccccCcceeecc---CCc-chHH
Q 044218 266 AQMDEIIAGIRNSGVRYLWVTRGDTS---RF---KDGHADDRGIVV-PWCDQL--RVLCHASIGGFWTH---CGL-NSTI 332 (436)
Q Consensus 266 ~~~~~l~~al~~~~~~~i~~~~~~~~---~~---~~~~~~~~~~v~-~~~pq~--~ll~~~~~~~~I~h---gG~-~s~~ 332 (436)
+.+...++.+.+.+.++++.-.++.. .+ ... .++++.+. ++.... .++..+++ ++.- -|. .+.+
T Consensus 312 ~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~l 388 (476)
T cd03791 312 DLLLEALPELLELGGQLVILGSGDPEYEEALRELAAR-YPGRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQM 388 (476)
T ss_pred HHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHH
Confidence 33444444444456777665544321 11 112 24677655 443222 36777777 7743 122 3778
Q ss_pred HHHhcCCcEeeccccc--cchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhc
Q 044218 333 ESLYAGVPMLTFPLFW--DQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMD 392 (436)
Q Consensus 333 eal~~GvP~l~~P~~~--DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~ 392 (436)
||+++|+|.|+....+ |.-.+...-.+. |.|..++. -+++++.++|.++++
T Consensus 389 EAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~--------~~~~~l~~~i~~~l~ 441 (476)
T cd03791 389 YAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG--------YNADALLAALRRALA 441 (476)
T ss_pred HHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC--------CCHHHHHHHHHHHHH
Confidence 9999999999866532 221111111123 57888886 478999999999875
No 109
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.61 E-value=0.0043 Score=54.78 Aligned_cols=82 Identities=17% Similarity=0.179 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhC--CCeEEEEEcCCCCcc-c----ccccCCCcEEeeccch---hh-hccccCcceeeccCC----cch
Q 044218 266 AQMDEIIAGIRNS--GVRYLWVTRGDTSRF-K----DGHADDRGIVVPWCDQ---LR-VLCHASIGGFWTHCG----LNS 330 (436)
Q Consensus 266 ~~~~~l~~al~~~--~~~~i~~~~~~~~~~-~----~~~~~~~~~v~~~~pq---~~-ll~~~~~~~~I~hgG----~~s 330 (436)
+.+...+..+.+. +.++++..+...... . .....+|+.+.+++++ .. ++..+++ +|+-.. .++
T Consensus 120 ~~~~~a~~~l~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~ 197 (229)
T cd01635 120 DDLIEAFALLKERGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLV 197 (229)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChH
Confidence 3344444444433 456655544433211 1 1113578999988632 22 4444777 887776 689
Q ss_pred HHHHHhcCCcEeecccccc
Q 044218 331 TIESLYAGVPMLTFPLFWD 349 (436)
Q Consensus 331 ~~eal~~GvP~l~~P~~~D 349 (436)
+.||+++|+|+|+.+..+.
T Consensus 198 ~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 198 VLEAMACGLPVIATDVGGP 216 (229)
T ss_pred HHHHHhCCCCEEEcCCCCc
Confidence 9999999999999887543
No 110
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.60 E-value=0.0014 Score=64.26 Aligned_cols=111 Identities=17% Similarity=0.182 Sum_probs=78.8
Q ss_pred CCcEEeeccchhh---hccccCcceeeccCC----cchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCc
Q 044218 300 DRGIVVPWCDQLR---VLCHASIGGFWTHCG----LNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEI 372 (436)
Q Consensus 300 ~~~~v~~~~pq~~---ll~~~~~~~~I~hgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~ 372 (436)
+++.+.+|+++.+ ++..+++.++|...- -++++||+++|+|+|+-.. ......+.+. +.|..+.. ..
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i~~~-~~G~l~~~-~~ 362 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIVDNG-GNGLLLSK-DP 362 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHhcCC-CcEEEeCC-CC
Confidence 5688889999754 555444444775543 4579999999999998543 3455666643 47887775 33
Q ss_pred cccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 044218 373 ASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFL 430 (436)
Q Consensus 373 ~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~ 430 (436)
+.+++.++|.+++++ +..+ +++++..++.+.+.-+...+.++|+
T Consensus 363 ------~~~~la~~I~~ll~~-----~~~~---~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 363 ------TPNELVSSLSKFIDN-----EEEY---QTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred ------CHHHHHHHHHHHHhC-----HHHH---HHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 789999999999987 4433 3456666666667888888888775
No 111
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.60 E-value=0.012 Score=59.84 Aligned_cols=76 Identities=14% Similarity=0.020 Sum_probs=51.5
Q ss_pred CcEEeeccchhh-hccccCcceeecc----CCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCcccc
Q 044218 301 RGIVVPWCDQLR-VLCHASIGGFWTH----CGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASE 375 (436)
Q Consensus 301 ~~~v~~~~pq~~-ll~~~~~~~~I~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~ 375 (436)
++.+.++.++.. ++..+++ ||.= +=.+++.||+++|+|+|+.-..+... +. . |.+..+..
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~-~-g~nGll~~------ 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FR-S-FPNCLTYK------ 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Ee-e-cCCeEecC------
Confidence 355667766554 8888887 7752 22457889999999999987754321 22 2 22222223
Q ss_pred CccCHHHHHHHHHHHhccC
Q 044218 376 RLVTRDEITELVKRFMDLN 394 (436)
Q Consensus 376 ~~~t~~~l~~~i~~ll~~~ 394 (436)
+.+++.++|.++|+++
T Consensus 667 ---D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 667 ---TSEDFVAKVKEALANE 682 (794)
T ss_pred ---CHHHHHHHHHHHHhCc
Confidence 7899999999999873
No 112
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.59 E-value=0.072 Score=53.39 Aligned_cols=112 Identities=16% Similarity=0.247 Sum_probs=69.1
Q ss_pred CCCcEEeeccchhh-hccccCcceeecc---CC-cchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCcc
Q 044218 299 DDRGIVVPWCDQLR-VLCHASIGGFWTH---CG-LNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIA 373 (436)
Q Consensus 299 ~~~~~v~~~~pq~~-ll~~~~~~~~I~h---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~ 373 (436)
.+++++.+|..+.. +|..+++ ||.- -| -+++.||+++|+|+|+... ..+...+.+. ..|..++.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~---- 522 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDD---- 522 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECC----
Confidence 47889988876543 7888888 8753 34 5589999999999998764 3455666655 67888876
Q ss_pred ccCccCHHHHHHHHH---HHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 044218 374 SERLVTRDEITELVK---RFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDI 433 (436)
Q Consensus 374 ~~~~~t~~~l~~~i~---~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 433 (436)
-+.+.+.+++. +++.. .+...++++..++.+.+.-+....+++..+.+
T Consensus 523 ----~D~~aLa~ai~lA~aL~~l--------l~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~ 573 (578)
T PRK15490 523 ----AQTVNLDQACRYAEKLVNL--------WRSRTGICQQTQSFLQERFTVEHMVGTFVKTI 573 (578)
T ss_pred ----CChhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 24445555442 22221 11122344444444444667666666666554
No 113
>PLN02949 transferase, transferring glycosyl groups
Probab=97.52 E-value=0.033 Score=55.44 Aligned_cols=79 Identities=16% Similarity=0.096 Sum_probs=51.4
Q ss_pred CCCcEEeeccchhh---hccccCcceeec---cCCcc-hHHHHHhcCCcEeeccccc---cchhhHHHHhhhhceeeEee
Q 044218 299 DDRGIVVPWCDQLR---VLCHASIGGFWT---HCGLN-STIESLYAGVPMLTFPLFW---DQVPNSKQIVQDWKTGWRVK 368 (436)
Q Consensus 299 ~~~~~v~~~~pq~~---ll~~~~~~~~I~---hgG~~-s~~eal~~GvP~l~~P~~~---DQ~~na~~~~~~lG~G~~~~ 368 (436)
.+++.+.+++|+.+ +|..+++ +|+ +=|.| ++.||+++|+|.|+....+ |.-.+. ..-..|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~----~~g~tG~l~- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDE----DGQQTGFLA- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecC----CCCcccccC-
Confidence 57899999998554 6777877 763 22333 7999999999999986532 111100 000123221
Q ss_pred cCCccccCccCHHHHHHHHHHHhcc
Q 044218 369 KPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 369 ~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
. +.+++.++|.+++++
T Consensus 407 ~---------~~~~la~ai~~ll~~ 422 (463)
T PLN02949 407 T---------TVEEYADAILEVLRM 422 (463)
T ss_pred C---------CHHHHHHHHHHHHhC
Confidence 2 789999999999974
No 114
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.45 E-value=0.00044 Score=65.97 Aligned_cols=108 Identities=12% Similarity=0.119 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhC-CCeEEEEEcCCCCc---c---cccccCCCcEEeeccc---hhhhccccCcceeeccCCcchHH-HH
Q 044218 266 AQMDEIIAGIRNS-GVRYLWVTRGDTSR---F---KDGHADDRGIVVPWCD---QLRVLCHASIGGFWTHCGLNSTI-ES 334 (436)
Q Consensus 266 ~~~~~l~~al~~~-~~~~i~~~~~~~~~---~---~~~~~~~~~~v~~~~p---q~~ll~~~~~~~~I~hgG~~s~~-ea 334 (436)
..+..+++++.+. ++++||.+...+.+ + ... . +|+++++-++ ...+|.++++ +|+..| ++. ||
T Consensus 200 ~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~-~-~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs--GI~eEa 273 (346)
T PF02350_consen 200 EQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKK-Y-DNVRLIEPLGYEEYLSLLKNADL--VVGDSS--GIQEEA 273 (346)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT---TTEEEE----HHHHHHHHHHESE--EEESSH--HHHHHG
T ss_pred HHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhcc-c-CCEEEECCCCHHHHHHHHhcceE--EEEcCc--cHHHHH
Confidence 4566677777777 78999998854311 1 122 3 5888886555 5568899999 999999 666 99
Q ss_pred HhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 335 LYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 335 l~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
.++|+|.|.+ .|+-..=.-+. . |..+.+.. +.++|.+++++++++
T Consensus 274 ~~lg~P~v~i---R~~geRqe~r~-~-~~nvlv~~---------~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 274 PSLGKPVVNI---RDSGERQEGRE-R-GSNVLVGT---------DPEAIIQAIEKALSD 318 (346)
T ss_dssp GGGT--EEEC---SSS-S-HHHHH-T-TSEEEETS---------SHHHHHHHHHHHHH-
T ss_pred HHhCCeEEEe---cCCCCCHHHHh-h-cceEEeCC---------CHHHHHHHHHHHHhC
Confidence 9999999999 22222222222 3 55555444 999999999999875
No 115
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.30 E-value=0.0012 Score=56.13 Aligned_cols=81 Identities=15% Similarity=0.217 Sum_probs=62.8
Q ss_pred cCCCcEEeeccc--h-hhhccccCcceeecc----CCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecC
Q 044218 298 ADDRGIVVPWCD--Q-LRVLCHASIGGFWTH----CGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKP 370 (436)
Q Consensus 298 ~~~~~~v~~~~p--q-~~ll~~~~~~~~I~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~ 370 (436)
..+++.+.++.+ + ..++..+++ +|+. ++..++.||+++|+|+|+. |...+...+.+. +.|..++.
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~~- 142 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFDP- 142 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEEST-
T ss_pred cccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeCC-
Confidence 357899999998 3 338888888 8876 5567999999999999974 466666777655 67888887
Q ss_pred CccccCccCHHHHHHHHHHHhcc
Q 044218 371 EIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 371 ~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
.+.+++.++|.+++++
T Consensus 143 -------~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 143 -------NDIEELADAIEKLLND 158 (172)
T ss_dssp -------TSHHHHHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHHHHCC
Confidence 4899999999999987
No 116
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.25 E-value=0.0039 Score=59.42 Aligned_cols=111 Identities=18% Similarity=0.318 Sum_probs=76.7
Q ss_pred cCCCcEEeeccchhhh---ccccCcceeeccC-------Cc------chHHHHHhcCCcEeeccccccchhhHHHHhhhh
Q 044218 298 ADDRGIVVPWCDQLRV---LCHASIGGFWTHC-------GL------NSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDW 361 (436)
Q Consensus 298 ~~~~~~v~~~~pq~~l---l~~~~~~~~I~hg-------G~------~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~l 361 (436)
..+|+.+.+|+|+.++ |.. +++.+...- .+ +-+.+.+++|+|+|+. ++...+..+++.
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~- 278 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN- 278 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-
Confidence 3679999999998765 333 333332211 11 1266789999999985 457788889888
Q ss_pred ceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 044218 362 KTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLK 431 (436)
Q Consensus 362 G~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~ 431 (436)
++|+.++ +.+++.+++.++..+ + ...|++|++++++.++. |..-...+++++.
T Consensus 279 ~~G~~v~----------~~~el~~~l~~~~~~-~--~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 279 GLGFVVD----------SLEELPEIIDNITEE-E--YQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred CceEEeC----------CHHHHHHHHHhcCHH-H--HHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 9998886 356888888876432 1 26789999999999885 5555555555543
No 117
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.23 E-value=0.0044 Score=60.60 Aligned_cols=152 Identities=18% Similarity=0.231 Sum_probs=79.9
Q ss_pred CcccChHHHHHHHHHHHhCCCeEEEEEcCCCCc---c------cccccCCCcEEeeccchhh---hccccCcceee---c
Q 044218 260 FYSVSSAQMDEIIAGIRNSGVRYLWVTRGDTSR---F------KDGHADDRGIVVPWCDQLR---VLCHASIGGFW---T 324 (436)
Q Consensus 260 ~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~---~------~~~~~~~~~~v~~~~pq~~---ll~~~~~~~~I---~ 324 (436)
....+++.+....+-|++.+-..+|..+..... + ... .++++.+.++.++.+ .+..+++ ++ .
T Consensus 294 ~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv-~~~Ri~f~~~~~~~ehl~~~~~~DI--~LDT~p 370 (468)
T PF13844_consen 294 LFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGV-DPDRIIFSPVAPREEHLRRYQLADI--CLDTFP 370 (468)
T ss_dssp GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS--GGGEEEEE---HHHHHHHGGG-SE--EE--SS
T ss_pred cccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCC-ChhhEEEcCCCCHHHHHHHhhhCCE--EeeCCC
Confidence 345788888888899999998888887654311 1 011 246788888877544 3444555 65 4
Q ss_pred cCCcchHHHHHhcCCcEeeccccc-cchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHH
Q 044218 325 HCGLNSTIESLYAGVPMLTFPLFW-DQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSK 403 (436)
Q Consensus 325 hgG~~s~~eal~~GvP~l~~P~~~-DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~ 403 (436)
.+|..|++|||++|||+|.+|--. =...-+..+. .+|+.-.+.. +.++-.+.-.++-.| +++++
T Consensus 371 ~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~-~lGl~ElIA~---------s~~eYv~~Av~La~D-----~~~l~ 435 (468)
T PF13844_consen 371 YNGGTTTLDALWMGVPVVTLPGETMASRVGASILR-ALGLPELIAD---------SEEEYVEIAVRLATD-----PERLR 435 (468)
T ss_dssp S--SHHHHHHHHHT--EEB---SSGGGSHHHHHHH-HHT-GGGB-S---------SHHHHHHHHHHHHH------HHHHH
T ss_pred CCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHH-HcCCchhcCC---------CHHHHHHHHHHHhCC-----HHHHH
Confidence 578889999999999999999532 3344455555 5477755554 555555544456555 44443
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044218 404 RAREVQEICREAAAENGSSITNLDAFLKDIS 434 (436)
Q Consensus 404 ~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 434 (436)
+++++++++... |.-.+-+.+.+.++
T Consensus 436 ---~lR~~Lr~~~~~--SpLfd~~~~ar~lE 461 (468)
T PF13844_consen 436 ---ALRAKLRDRRSK--SPLFDPKRFARNLE 461 (468)
T ss_dssp ---HHHHHHHHHHHH--SGGG-HHHHHHHHH
T ss_pred ---HHHHHHHHHHhh--CCCCCHHHHHHHHH
Confidence 344444433222 33344555555554
No 118
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.13 E-value=0.31 Score=47.78 Aligned_cols=99 Identities=11% Similarity=0.021 Sum_probs=60.3
Q ss_pred HHHHHHHHHhCCCe-EEEEEcCCCCcccccccCCCcEEeeccch----hhhccccCcceeecc----CCcchHHHHHhcC
Q 044218 268 MDEIIAGIRNSGVR-YLWVTRGDTSRFKDGHADDRGIVVPWCDQ----LRVLCHASIGGFWTH----CGLNSTIESLYAG 338 (436)
Q Consensus 268 ~~~l~~al~~~~~~-~i~~~~~~~~~~~~~~~~~~~~v~~~~pq----~~ll~~~~~~~~I~h----gG~~s~~eal~~G 338 (436)
...+++++...+.. -++.+|..+. . ...++...++... ..++..+++ ||.- |--+++.||+++|
T Consensus 258 ~~~li~A~~~l~~~~~L~ivG~g~~---~--~~~~v~~~g~~~~~~~l~~~y~~aDv--fV~pS~~Egfp~vilEAmA~G 330 (405)
T PRK10125 258 DQQLVREMMALGDKIELHTFGKFSP---F--TAGNVVNHGFETDKRKLMSALNQMDA--LVFSSRVDNYPLILCEALSIG 330 (405)
T ss_pred HHHHHHHHHhCCCCeEEEEEcCCCc---c--cccceEEecCcCCHHHHHHHHHhCCE--EEECCccccCcCHHHHHHHcC
Confidence 46677888776533 2344454321 1 1345666666532 235555676 7753 3345889999999
Q ss_pred CcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHH
Q 044218 339 VPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELV 387 (436)
Q Consensus 339 vP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i 387 (436)
+|+|+....+ ....+. . +.|..++. -+.+.|++.+
T Consensus 331 ~PVVat~~gG----~~Eiv~-~-~~G~lv~~--------~d~~~La~~~ 365 (405)
T PRK10125 331 VPVIATHSDA----AREVLQ-K-SGGKTVSE--------EEVLQLAQLS 365 (405)
T ss_pred CCEEEeCCCC----hHHhEe-C-CcEEEECC--------CCHHHHHhcc
Confidence 9999988754 223333 4 56888877 3677777643
No 119
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=97.00 E-value=0.19 Score=48.26 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=75.4
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCee-EEecCCCCCCCCCCCCCHHHH
Q 044218 11 TSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIR-FRTLPNTIPSEHGRANDFAGF 89 (436)
Q Consensus 11 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~-~~~l~~~l~~~~~~~~~~~~~ 89 (436)
..+++|+++-....|++.-+.++.+.|++..++.+|++++.+.+.+.++... .++ +..++.. .......
T Consensus 3 ~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P---~id~vi~~~~~-------~~~~~~~ 72 (352)
T PRK10422 3 KPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENP---EINALYGIKNK-------KAGASEK 72 (352)
T ss_pred CCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCC---CceEEEEeccc-------cccHHHH
Confidence 4468999999999999999999999999988899999999998888776541 232 2223211 0011101
Q ss_pred HHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEE
Q 044218 90 LEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASL 146 (436)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~ 146 (436)
+. .+..++.+++.. ++|++|.-........++...|.|..+-
T Consensus 73 ~~--------~~~~l~~~lr~~-------~yD~vidl~~~~~s~ll~~l~~a~~rig 114 (352)
T PRK10422 73 IK--------NFFSLIKVLRAN-------KYDLIVNLTDQWMVALLVRLLNARVKIS 114 (352)
T ss_pred HH--------HHHHHHHHHhhC-------CCCEEEEcccchHHHHHHHHhCCCeEEe
Confidence 11 123445566555 8999996655555566777888888663
No 120
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.99 E-value=0.031 Score=54.18 Aligned_cols=124 Identities=9% Similarity=-0.039 Sum_probs=70.5
Q ss_pred CCCeEEecCCCCCCCCCcc-cChHHHHHHHHHHHhCCCeEEEEEcC-CCCcccccccCCCcEEeeccchhh---hccccC
Q 044218 244 SFPVLLAQFCTSHWEAFYS-VSSAQMDEIIAGIRNSGVRYLWVTRG-DTSRFKDGHADDRGIVVPWCDQLR---VLCHAS 318 (436)
Q Consensus 244 ~~~~~~vGpl~~~wGS~~~-~~~~~~~~l~~al~~~~~~~i~~~~~-~~~~~~~~~~~~~~~v~~~~pq~~---ll~~~~ 318 (436)
.+.+.|+| ++.. ...+.+..+++ ...++.++++-.+ ...........+|+++.+++|+.+ .+.+++
T Consensus 205 ~~~i~y~G-------~l~~~~d~~ll~~la~--~~p~~~~vliG~~~~~~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~D 275 (373)
T cd04950 205 RPVIGYYG-------AIAEWLDLELLEALAK--ARPDWSFVLIGPVDVSIDPSALLRLPNVHYLGPKPYKELPAYLAGFD 275 (373)
T ss_pred CCEEEEEe-------ccccccCHHHHHHHHH--HCCCCEEEEECCCcCccChhHhccCCCEEEeCCCCHHHHHHHHHhCC
Confidence 34577776 4432 22233333333 2235666665443 111111110137899999998554 677888
Q ss_pred cceee------ccCCc-chHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHh
Q 044218 319 IGGFW------THCGL-NSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFM 391 (436)
Q Consensus 319 ~~~~I------~hgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll 391 (436)
+..+- +.++. +.+.|++++|+|+|+.++ ...++.. +.++.... +.+++.++|.+++
T Consensus 276 v~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~~~~~~~~---------d~~~~~~ai~~~l 338 (373)
T cd04950 276 VAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-DEVVLIAD---------DPEEFVAAIEKAL 338 (373)
T ss_pred EEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-CcEEEeCC---------CHHHHHHHHHHHH
Confidence 83321 22332 358999999999998763 2223322 32333333 8999999999977
Q ss_pred cc
Q 044218 392 DL 393 (436)
Q Consensus 392 ~~ 393 (436)
.+
T Consensus 339 ~~ 340 (373)
T cd04950 339 LE 340 (373)
T ss_pred hc
Confidence 65
No 121
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.033 Score=54.86 Aligned_cols=153 Identities=15% Similarity=0.186 Sum_probs=95.0
Q ss_pred CCCcccChHHHHHHHHHHHhCCCeEEEEEcCCC-Ccc----c------ccccCCCcEEeeccch---hhhccccCcceee
Q 044218 258 EAFYSVSSAQMDEIIAGIRNSGVRYLWVTRGDT-SRF----K------DGHADDRGIVVPWCDQ---LRVLCHASIGGFW 323 (436)
Q Consensus 258 GS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~-~~~----~------~~~~~~~~~v~~~~pq---~~ll~~~~~~~~I 323 (436)
+......++.+..-+.=|+..+-.++|..++.+ +++ . .. ..++.++.+..|. .+-+.-+++ |+
T Consensus 437 ~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv-~~eRL~f~p~~~~~~h~a~~~iADl--vL 513 (620)
T COG3914 437 NNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGV-DSERLRFLPPAPNEDHRARYGIADL--VL 513 (620)
T ss_pred CCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCC-ChhheeecCCCCCHHHHHhhchhhe--ee
Confidence 566667888888777778888888888887732 111 1 11 2457777777663 334555666 76
Q ss_pred c---cCCcchHHHHHhcCCcEeeccccccchh--hHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccch
Q 044218 324 T---HCGLNSTIESLYAGVPMLTFPLFWDQVP--NSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDER 398 (436)
Q Consensus 324 ~---hgG~~s~~eal~~GvP~l~~P~~~DQ~~--na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~ 398 (436)
. -||..|..|+|++|||+|.++ ++|+. |+.-+....|+--.+.. -.++-|+.+|+ +=.+
T Consensus 514 DTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~--------s~~dYV~~av~-~g~d----- 577 (620)
T COG3914 514 DTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVAD--------SRADYVEKAVA-FGSD----- 577 (620)
T ss_pred ecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcC--------CHHHHHHHHHH-hccc-----
Confidence 4 589999999999999999988 77775 66666655455444443 24566777763 3222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044218 399 KEMSKRAREVQEICREAAAENGSSITNLDAFLKDIS 434 (436)
Q Consensus 399 ~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 434 (436)
++.+++++.+++.. ...+.--+.+.|.++|.
T Consensus 578 ---ral~q~~r~~l~~~--r~tspL~d~~~far~le 608 (620)
T COG3914 578 ---RALRQQVRAELKRS--RQTSPLFDPKAFARKLE 608 (620)
T ss_pred ---HHHHHhhHHHHHhc--cccCcccCHHHHHHHHH
Confidence 33344555555542 12233444555555553
No 122
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.85 E-value=0.0043 Score=50.28 Aligned_cols=106 Identities=16% Similarity=0.247 Sum_probs=60.1
Q ss_pred HHHHHHhC--CCeEEEEEcCCCCcccccccCCCcEEeeccchhh-hccccCcceeecc--CC-cchHHHHHhcCCcEeec
Q 044218 271 IIAGIRNS--GVRYLWVTRGDTSRFKDGHADDRGIVVPWCDQLR-VLCHASIGGFWTH--CG-LNSTIESLYAGVPMLTF 344 (436)
Q Consensus 271 l~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~pq~~-ll~~~~~~~~I~h--gG-~~s~~eal~~GvP~l~~ 344 (436)
+++.+.+. +..+.+ +|..++.+... ..+++++.+|+++.. ++..+++...... .| .+++.|++++|+|+|+.
T Consensus 24 ~~~~l~~~~p~~~l~i-~G~~~~~l~~~-~~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~ 101 (135)
T PF13692_consen 24 ALERLKEKHPDIELII-IGNGPDELKRL-RRPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIAS 101 (135)
T ss_dssp HHHHHHHHSTTEEEEE-ECESS-HHCCH-HHCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEE
T ss_pred HHHHHHHHCcCEEEEE-EeCCHHHHHHh-cCCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEEC
Confidence 44445433 344444 34333333322 246999999987544 7888888555442 22 47899999999999998
Q ss_pred cccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 345 PLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 345 P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
+.. ....++.. +.|..+.. +++++.++|.++++|
T Consensus 102 ~~~-----~~~~~~~~-~~~~~~~~---------~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 102 DNG-----AEGIVEED-GCGVLVAN---------DPEELAEAIERLLND 135 (135)
T ss_dssp HHH-----CHCHS----SEEEE-TT----------HHHHHHHHHHHHH-
T ss_pred Ccc-----hhhheeec-CCeEEECC---------CHHHHHHHHHHHhcC
Confidence 761 22233323 77877743 999999999999864
No 123
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=96.82 E-value=0.014 Score=56.28 Aligned_cols=83 Identities=18% Similarity=0.256 Sum_probs=60.6
Q ss_pred CCCcEEeeccchhh-hccccCcceeecc--CCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCcccc
Q 044218 299 DDRGIVVPWCDQLR-VLCHASIGGFWTH--CGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASE 375 (436)
Q Consensus 299 ~~~~~v~~~~pq~~-ll~~~~~~~~I~h--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~ 375 (436)
++++.+.++.++.. ++..+++-.+.++ |...++.||+++|+|+|+..... .....+++. ..|..++.
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~------ 329 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK------ 329 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC------
Confidence 56788888777654 8888888334343 23458999999999999965432 234555544 67888876
Q ss_pred CccCHHHHHHHHHHHhcc
Q 044218 376 RLVTRDEITELVKRFMDL 393 (436)
Q Consensus 376 ~~~t~~~l~~~i~~ll~~ 393 (436)
-+.+++.++|.+++++
T Consensus 330 --~d~~~la~~i~~ll~~ 345 (372)
T cd04949 330 --GDIEALAEAIIELLND 345 (372)
T ss_pred --CcHHHHHHHHHHHHcC
Confidence 4899999999999987
No 124
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.76 E-value=0.061 Score=53.99 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=70.4
Q ss_pred CCCcEEeeccchhhhccccCcceeecc----CCcchHHHHHhcCCcEeeccccccchhhHHHHhhh----h-ceeeEeec
Q 044218 299 DDRGIVVPWCDQLRVLCHASIGGFWTH----CGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQD----W-KTGWRVKK 369 (436)
Q Consensus 299 ~~~~~v~~~~pq~~ll~~~~~~~~I~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~----l-G~G~~~~~ 369 (436)
.+++++.+...-..++..+++ +|.- |--+++.||+++|+|+|+- |.......+++. + ..|..++.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEECC
Confidence 468888885555668877777 6643 2345899999999999994 344445555531 1 26877776
Q ss_pred CCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 044218 370 PEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLK 431 (436)
Q Consensus 370 ~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~ 431 (436)
.+.+++.++|.+++++ +..+++ +++..++.+.+.-+....++++.+
T Consensus 427 --------~d~~~la~ai~~ll~~-----~~~~~~---~~~~a~~~v~~~~s~~~~~~~y~~ 472 (475)
T cd03813 427 --------ADPEALARAILRLLKD-----PELRRA---MGEAGRKRVERYYTLERMIDSYRR 472 (475)
T ss_pred --------CCHHHHHHHHHHHhcC-----HHHHHH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4899999999999987 544433 333333322233444444554443
No 125
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=96.65 E-value=0.14 Score=48.28 Aligned_cols=111 Identities=19% Similarity=0.203 Sum_probs=65.5
Q ss_pred hccccCcceeeccCCcchHHHHHhcCCcEeecc-ccccchhhHHHHhhhhcee-------eEeecCCccccCccCHHHHH
Q 044218 313 VLCHASIGGFWTHCGLNSTIESLYAGVPMLTFP-LFWDQVPNSKQIVQDWKTG-------WRVKKPEIASERLVTRDEIT 384 (436)
Q Consensus 313 ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P-~~~DQ~~na~~~~~~lG~G-------~~~~~~~~~~~~~~t~~~l~ 384 (436)
.+..|++ .+.-+|. -+.|+..+|+|||+.= ...=-+.-|++....+=++ ..+-+ + --....+++.|.
T Consensus 261 a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivP-E-liq~~~~pe~la 335 (381)
T COG0763 261 AFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVP-E-LIQEDCTPENLA 335 (381)
T ss_pred HHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccch-H-HHhhhcCHHHHH
Confidence 6777777 8888886 4679999999998752 1222233444444332222 11111 1 011447899999
Q ss_pred HHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 044218 385 ELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDI 433 (436)
Q Consensus 385 ~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 433 (436)
+++.+++.|. ...+.+++...+|.+.++ .++.++...+.+++.+
T Consensus 336 ~~l~~ll~~~-~~~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 336 RALEELLLNG-DRREALKEKFRELHQYLR----EDPASEIAAQAVLELL 379 (381)
T ss_pred HHHHHHhcCh-HhHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHh
Confidence 9999999883 001345555556666655 3446666655555554
No 126
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.64 E-value=0.05 Score=50.31 Aligned_cols=104 Identities=14% Similarity=0.063 Sum_probs=69.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCee-EEecCCCCCCCCCCCCCHHHHHHHH
Q 044218 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIR-FRTLPNTIPSEHGRANDFAGFLEAV 93 (436)
Q Consensus 15 ~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~-~~~l~~~l~~~~~~~~~~~~~~~~~ 93 (436)
||+++-..+.|++.-+.++.++|++..++.+|++++.+.+.+.++... .++ +..++... .....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p---~id~v~~~~~~~-----~~~~~------- 65 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMP---EVDRVIVLPKKH-----GKLGL------- 65 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCC---ccCEEEEcCCcc-----cccch-------
Confidence 588999999999999999999999977779999999998888777651 222 22222110 00011
Q ss_pred HHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEE
Q 044218 94 FTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVAS 145 (436)
Q Consensus 94 ~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~ 145 (436)
..+.+++..++.. ++|+++.-........++...+++...
T Consensus 66 -----~~~~~~~~~l~~~-------~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 66 -----GARRRLARALRRR-------RYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred -----HHHHHHHHHHhhc-------CCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 1223455555544 899999665555445566666766655
No 127
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=96.54 E-value=0.03 Score=56.26 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=57.9
Q ss_pred CCCcEEeeccchhhhccccCcceeec---cCC-cchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccc
Q 044218 299 DDRGIVVPWCDQLRVLCHASIGGFWT---HCG-LNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIAS 374 (436)
Q Consensus 299 ~~~~~v~~~~pq~~ll~~~~~~~~I~---hgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~ 374 (436)
.+++.+.++.+...++..+++ +|. .=| ..++.||+++|+|+|+.-... .+...+++- .-|..++...+ .
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g-~nG~lv~~~~~-~ 447 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDN-KNGYLIPIDEE-E 447 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCC-CCEEEEeCCcc-c
Confidence 456888888877788988888 775 233 458899999999999976431 234445433 45777763010 0
Q ss_pred cCccC-HHHHHHHHHHHhcc
Q 044218 375 ERLVT-RDEITELVKRFMDL 393 (436)
Q Consensus 375 ~~~~t-~~~l~~~i~~ll~~ 393 (436)
...-+ .+.++++|.+++++
T Consensus 448 ~d~~~~~~~la~~I~~ll~~ 467 (500)
T TIGR02918 448 DDEDQIITALAEKIVEYFNS 467 (500)
T ss_pred cchhHHHHHHHHHHHHHhCh
Confidence 00012 78899999999954
No 128
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.41 E-value=0.52 Score=45.04 Aligned_cols=108 Identities=15% Similarity=0.072 Sum_probs=73.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCee-EEecCCCCCCCCCCCCCHHHHHHHH
Q 044218 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIR-FRTLPNTIPSEHGRANDFAGFLEAV 93 (436)
Q Consensus 15 ~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~-~~~l~~~l~~~~~~~~~~~~~~~~~ 93 (436)
||+++-....|++.-+.++.+.|++..++.+|++++.+.+.+.++... .++ +..++... .... ....
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p---~vd~vi~~~~~~------~~~~---~~~~ 68 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENP---DINALYGLDRKK------AKAG---ERKL 68 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCC---CccEEEEeChhh------hcch---HHHH
Confidence 589999999999999999999999988899999999998887776541 232 33333111 0000 0000
Q ss_pred HHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEE
Q 044218 94 FTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASL 146 (436)
Q Consensus 94 ~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~ 146 (436)
. .+..++..++.. ++|++|.-...+....++...|+|..+-
T Consensus 69 ----~-~~~~l~~~lr~~-------~yD~vidl~~~~~s~ll~~l~~a~~riG 109 (344)
T TIGR02201 69 ----A-NQFHLIKVLRAN-------RYDLVVNLTDQWMVAILVKLLNARVKIG 109 (344)
T ss_pred ----H-HHHHHHHHHHhC-------CCCEEEECCcchHHHHHHHhcCCCeEEe
Confidence 0 112344555544 8999996655566778889999998764
No 129
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.0064 Score=47.90 Aligned_cols=82 Identities=13% Similarity=0.042 Sum_probs=58.0
Q ss_pred CCeEEEEEcCCCCcccccccCCC-cEEeecc--c-hhhhccccCcceeeccCCcchHHHHHhcCCcEeecccc-------
Q 044218 279 GVRYLWVTRGDTSRFKDGHADDR-GIVVPWC--D-QLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLF------- 347 (436)
Q Consensus 279 ~~~~i~~~~~~~~~~~~~~~~~~-~~v~~~~--p-q~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~------- 347 (436)
..++|+-+|... . .|-| .++.+|. + -..+-..+++ +|+|||.||+..++..++|.+++|-.
T Consensus 30 ~e~lIvQyGn~d--~----kpvagl~v~~F~~~~kiQsli~darI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elv 101 (161)
T COG5017 30 QEELIVQYGNGD--I----KPVAGLRVYGFDKEEKIQSLIHDARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELV 101 (161)
T ss_pred hhheeeeecCCC--c----ccccccEEEeechHHHHHHHhhcceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhh
Confidence 346777777642 1 1223 3666554 3 2346666777 99999999999999999999999953
Q ss_pred -ccchhhHHHHhhhhceeeEeec
Q 044218 348 -WDQVPNSKQIVQDWKTGWRVKK 369 (436)
Q Consensus 348 -~DQ~~na~~~~~~lG~G~~~~~ 369 (436)
..|-.-|..+.+. +.=+...+
T Consensus 102 DdHQvela~klae~-~~vv~~sp 123 (161)
T COG5017 102 DDHQVELALKLAEI-NYVVACSP 123 (161)
T ss_pred hhHHHHHHHHHHhc-CceEEEcC
Confidence 3577788888855 76666665
No 130
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.21 E-value=0.9 Score=43.51 Aligned_cols=105 Identities=11% Similarity=0.026 Sum_probs=73.3
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeE-EecCCCCCCCCCCCCCHHHHHHH
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRF-RTLPNTIPSEHGRANDFAGFLEA 92 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~-~~l~~~l~~~~~~~~~~~~~~~~ 92 (436)
|||+++-..+.|++.-..++.+.|++..++.+|++++.+.+.+.++... .++- ..++.. ..... +
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P---~vd~vi~~~~~--------~~~~~-~-- 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMP---EVNEAIPMPLG--------HGALE-I-- 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCC---ccCEEEecccc--------cchhh-h--
Confidence 5899999999999999999999999988899999999998888777551 2221 112110 00000 0
Q ss_pred HHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEE
Q 044218 93 VFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVAS 145 (436)
Q Consensus 93 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~ 145 (436)
....+++..++.. ++|++|.-....-...++...|+|.-+
T Consensus 67 ------~~~~~l~~~lr~~-------~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 ------GERRRLGHSLREK-------RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ------HHHHHHHHHHHhc-------CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 1123445556555 899999765555666778888988766
No 131
>PHA01633 putative glycosyl transferase group 1
Probab=96.11 E-value=0.035 Score=52.49 Aligned_cols=85 Identities=12% Similarity=0.141 Sum_probs=56.7
Q ss_pred cCCCcEEee---ccchh---hhccccCcceeecc---CC-cchHHHHHhcCCcEeeccc------cccc------hhhHH
Q 044218 298 ADDRGIVVP---WCDQL---RVLCHASIGGFWTH---CG-LNSTIESLYAGVPMLTFPL------FWDQ------VPNSK 355 (436)
Q Consensus 298 ~~~~~~v~~---~~pq~---~ll~~~~~~~~I~h---gG-~~s~~eal~~GvP~l~~P~------~~DQ------~~na~ 355 (436)
.++++.+.+ ++++. .++..+++ +|.- =| -.++.||+++|+|+|+.-. ..|+ ..+..
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 467888874 44543 46777888 7753 23 3478899999999998633 2333 23333
Q ss_pred HHh--hhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 356 QIV--QDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 356 ~~~--~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
... +. |.|..++. .+++++.++|.++++.
T Consensus 277 ~~~~~~~-g~g~~~~~--------~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 277 EYYDKEH-GQKWKIHK--------FQIEDMANAIILAFEL 307 (335)
T ss_pred HhcCccc-CceeeecC--------CCHHHHHHHHHHHHhc
Confidence 222 24 66766665 6999999999998554
No 132
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.04 E-value=0.1 Score=42.35 Aligned_cols=101 Identities=11% Similarity=0.095 Sum_probs=63.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccC-CCCCCCCeeEEecCCCCCCCCCCCCCHHHHHHHH
Q 044218 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIG-SQSKPHNIRFRTLPNTIPSEHGRANDFAGFLEAV 93 (436)
Q Consensus 15 ~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~-~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~~~~~ 93 (436)
+|++++.....| ...+++.|.+ +||+|++++.....+... .. ++.+..++-.. .. ....+. .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~--~g~~V~ii~~~~~~~~~~~~~----~i~~~~~~~~~------k~-~~~~~~-~ 63 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKK--RGYDVHIITPRNDYEKYEIIE----GIKVIRLPSPR------KS-PLNYIK-Y 63 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHH--CCCEEEEEEcCCCchhhhHhC----CeEEEEecCCC------Cc-cHHHHH-H
Confidence 467777766666 4577999999 999999999955432222 33 78888885221 11 222221 1
Q ss_pred HHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcc---hHHHHhHhcC-CCeEEEc
Q 044218 94 FTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLP---WVVDVGNRRN-IPVASLW 147 (436)
Q Consensus 94 ~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~---~~~~~A~~~g-IP~v~~~ 147 (436)
. .+..++++. +||+|.+..... .+..++...+ +|++...
T Consensus 64 ----~-~l~k~ik~~----------~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~ 106 (139)
T PF13477_consen 64 ----F-RLRKIIKKE----------KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTV 106 (139)
T ss_pred ----H-HHHHHhccC----------CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEe
Confidence 1 234444444 999998776543 3445667888 9998753
No 133
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.02 E-value=0.042 Score=54.51 Aligned_cols=153 Identities=20% Similarity=0.311 Sum_probs=92.2
Q ss_pred cccChHHHHHHHHHHHhCCCeEEEEEcCCCC---ccc------ccccCCCcEEeeccch-----hhhccccCcceeeccC
Q 044218 261 YSVSSAQMDEIIAGIRNSGVRYLWVTRGDTS---RFK------DGHADDRGIVVPWCDQ-----LRVLCHASIGGFWTHC 326 (436)
Q Consensus 261 ~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~---~~~------~~~~~~~~~v~~~~pq-----~~ll~~~~~~~~I~hg 326 (436)
....++.++..++-|.+.+-.++|..+.... .+. .. -|+++.+.+-+.- ...|..-.++-..+.
T Consensus 769 yKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl-~p~riifs~va~k~eHvrr~~LaDv~LDTplcn- 846 (966)
T KOG4626|consen 769 YKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGL-EPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCN- 846 (966)
T ss_pred hcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCC-CccceeeccccchHHHHHhhhhhhhcccCcCcC-
Confidence 3578888999999999999999999887521 111 11 2567776655542 223433334445554
Q ss_pred CcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHH
Q 044218 327 GLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAR 406 (436)
Q Consensus 327 G~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~ 406 (436)
|.-|.++.|++|||||.+|.-.--...|.-+--.+|+|..+.+ |.++-.+.--++=.+ .++ .+
T Consensus 847 GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak---------~~eEY~~iaV~Latd-----~~~---L~ 909 (966)
T KOG4626|consen 847 GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK---------NREEYVQIAVRLATD-----KEY---LK 909 (966)
T ss_pred CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh---------hHHHHHHHHHHhhcC-----HHH---HH
Confidence 5678999999999999999754333333333335599987776 666655544445444 333 34
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044218 407 EVQEICREAAAENGSSITNLDAFLKDIS 434 (436)
Q Consensus 407 ~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 434 (436)
+++.+++++ +-+|.-.+..++...|+
T Consensus 910 ~lr~~l~~~--r~~splfd~~q~~~~LE 935 (966)
T KOG4626|consen 910 KLRAKLRKA--RASSPLFDTKQYAKGLE 935 (966)
T ss_pred HHHHHHHHH--hcCCCccCchHHHHHHH
Confidence 555555543 23455445555544443
No 134
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.84 E-value=0.6 Score=44.05 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=42.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCC
Q 044218 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQ 61 (436)
Q Consensus 15 ~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~ 61 (436)
||+++-....|++.-+.++.++|++..++.+|++++.+.+.+.++..
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~ 47 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLH 47 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcC
Confidence 58899999999999999999999998789999999999888877754
No 135
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=95.77 E-value=0.59 Score=44.19 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=43.1
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCC
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQ 61 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~ 61 (436)
|||+++-....|++.-..++.+.|++..++.+|++++.+.+.+.++..
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~ 48 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWH 48 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcC
Confidence 589999999999999999999999998889999999998877766544
No 136
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.70 E-value=0.13 Score=38.49 Aligned_cols=83 Identities=12% Similarity=0.110 Sum_probs=52.1
Q ss_pred cCCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHH
Q 044218 325 HCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKR 404 (436)
Q Consensus 325 hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~ 404 (436)
+|-..-+.|++++|+|+|+-.. ......+. . |.....-. +.+++.++|..+++++ ...++-
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~-~-~~~~~~~~---------~~~el~~~i~~ll~~~----~~~~~i 69 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFE-D-GEHIITYN---------DPEELAEKIEYLLENP----EERRRI 69 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcC-C-CCeEEEEC---------CHHHHHHHHHHHHCCH----HHHHHH
Confidence 4555688999999999998765 23333222 2 32222222 8999999999999983 344444
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHH
Q 044218 405 AREVQEICREAAAENGSSITNLDAFL 430 (436)
Q Consensus 405 a~~l~~~~~~a~~~~g~~~~~~~~~~ 430 (436)
+++..+.++ ..-+...-+++|+
T Consensus 70 a~~a~~~v~----~~~t~~~~~~~il 91 (92)
T PF13524_consen 70 AKNARERVL----KRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHHHH----HhCCHHHHHHHHH
Confidence 444444444 3667666666665
No 137
>PHA01630 putative group 1 glycosyl transferase
Probab=95.66 E-value=0.24 Score=47.05 Aligned_cols=111 Identities=12% Similarity=0.020 Sum_probs=62.4
Q ss_pred ccchhh---hccccCcceeec---cCC-cchHHHHHhcCCcEeeccccc--cch---hhHHHHhhh----------hcee
Q 044218 307 WCDQLR---VLCHASIGGFWT---HCG-LNSTIESLYAGVPMLTFPLFW--DQV---PNSKQIVQD----------WKTG 364 (436)
Q Consensus 307 ~~pq~~---ll~~~~~~~~I~---hgG-~~s~~eal~~GvP~l~~P~~~--DQ~---~na~~~~~~----------lG~G 364 (436)
++|+.+ ++..+++ +|. ..| ..++.||+++|+|+|+.-..+ |.- .|+..+... .++|
T Consensus 197 ~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G 274 (331)
T PHA01630 197 PLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVG 274 (331)
T ss_pred cCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccc
Confidence 365433 6778888 652 232 458899999999999976432 221 122211100 1345
Q ss_pred eEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044218 365 WRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDIS 434 (436)
Q Consensus 365 ~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 434 (436)
..++. +.+++.+++.++|.+.+- +.++++.++-+.... +..+-....+++.+.++
T Consensus 275 ~~v~~---------~~~~~~~~ii~~l~~~~~--~~~~~~~~~~~~~~~----~~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 275 YFLDP---------DIEDAYQKLLEALANWTP--EKKKENLEGRAILYR----ENYSYNAIAKMWEKILE 329 (331)
T ss_pred cccCC---------CHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHh
Confidence 55554 677888888888876211 234443333333332 35666666677766664
No 138
>PRK14098 glycogen synthase; Provisional
Probab=95.56 E-value=0.17 Score=50.89 Aligned_cols=112 Identities=8% Similarity=0.102 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCC---Cccc---ccccCCCcEEeeccchh---hhccccCcceeeccC---Cc-chHH
Q 044218 266 AQMDEIIAGIRNSGVRYLWVTRGDT---SRFK---DGHADDRGIVVPWCDQL---RVLCHASIGGFWTHC---GL-NSTI 332 (436)
Q Consensus 266 ~~~~~l~~al~~~~~~~i~~~~~~~---~~~~---~~~~~~~~~v~~~~pq~---~ll~~~~~~~~I~hg---G~-~s~~ 332 (436)
+.+...+..+.+.+.++++.-.++. +.+. .. .++++.+....+.. .+++.+++ ++.-. |. .+.+
T Consensus 323 d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~-~~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~l 399 (489)
T PRK14098 323 ELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEE-HPEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQM 399 (489)
T ss_pred HHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHH-CCCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHH
Confidence 3333334444445677666544432 1121 22 36788888888764 47888888 77432 22 3678
Q ss_pred HHHhcCCcEeeccccc--cchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHh
Q 044218 333 ESLYAGVPMLTFPLFW--DQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFM 391 (436)
Q Consensus 333 eal~~GvP~l~~P~~~--DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll 391 (436)
||+++|+|.|+....+ |.-.+ ..++. +.|..++. .+++.+.++|.+++
T Consensus 400 EAma~G~ppVv~~~GGl~d~v~~--~~~~~-~~G~l~~~--------~d~~~la~ai~~~l 449 (489)
T PRK14098 400 FAMSYGTIPVAYAGGGIVETIEE--VSEDK-GSGFIFHD--------YTPEALVAKLGEAL 449 (489)
T ss_pred HHHhCCCCeEEecCCCCceeeec--CCCCC-CceeEeCC--------CCHHHHHHHHHHHH
Confidence 9999999888776532 22111 11123 67877776 48999999999876
No 139
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.50 E-value=0.87 Score=43.34 Aligned_cols=263 Identities=13% Similarity=0.111 Sum_probs=139.9
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCCCCCCCCCHHHHHHH
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPSEHGRANDFAGFLEA 92 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~~~~ 92 (436)
+|+|+++-....|++.=.+++-..|++..++.++++++++.+.+.++... .++-.-. ..... ..
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p---~I~~vi~-----~~~~~-~~------- 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNP---EIDKVII-----IDKKK-KG------- 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcCh---Hhhhhcc-----ccccc-cc-------
Confidence 58999999999999999999999999988889999999998887766541 1110000 00000 01
Q ss_pred HHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHHhhHHHHhcCCCCCC
Q 044218 93 VFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERNGHFPFD 172 (436)
Q Consensus 93 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 172 (436)
.-......+...++.. ++|+||.-...+-...++...++|.-+-......-......+.
T Consensus 65 ---~~~~~~~~l~~~lr~~-------~yD~vidl~~~~ksa~l~~~~~~~~r~g~~~~~~r~~~~~~~~----------- 123 (334)
T COG0859 65 ---LGLKERLALLRTLRKE-------RYDAVIDLQGLLKSALLALLLGIPFRIGFDKKSARELLLNKFY----------- 123 (334)
T ss_pred ---cchHHHHHHHHHhhcc-------CCCEEEECcccHHHHHHHHHhCCCcccccccccchhHHHHHhh-----------
Confidence 0111223455556544 7999998777777777788889988774431111000000000
Q ss_pred CCCCCCcccccCCCCCCCCCCCCCcccccCCchHHHHHHHhhcccccceEEEEcchhhhhHHHHH---HHhhcCCCCeEE
Q 044218 173 LSEKGDELVDCIPGLEPTKLADFPTIFHGAGRKILHAALQSASKVSKAQYLLLSSVYKLEAKTID---ALKEEFSFPVLL 249 (436)
Q Consensus 173 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~ 249 (436)
+. .... ......+....................+.++....+ .+.. ...+.+.
T Consensus 124 ------------~~---~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~ 179 (334)
T COG0859 124 ------------PR---LDKP--------EGQHVVERYLALLEDLGLYPPPEPQLDFPLPRPPIELAKNLAK-FDRPYIV 179 (334)
T ss_pred ------------hc---cCcc--------cchhHHHHHHHHHHHhcCCCCCCCccCcccccCHHHHHHHHHh-cCCCeEE
Confidence 00 0000 011111122111111000000000000111111111 1111 1134444
Q ss_pred ecCCCCCCC-CCc---ccChHHHHHHHHHHHhCCCeEEEEEcCCCCc----ccccccCCCcEEeeccc--hhh-hccccC
Q 044218 250 AQFCTSHWE-AFY---SVSSAQMDEIIAGIRNSGVRYLWVTRGDTSR----FKDGHADDRGIVVPWCD--QLR-VLCHAS 318 (436)
Q Consensus 250 vGpl~~~wG-S~~---~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~----~~~~~~~~~~~v~~~~p--q~~-ll~~~~ 318 (436)
+.| | |.+ .++.+.+.++++.+.+.++++++..+.+..+ ..+. .+..+.+.+-.+ |.. ++.+++
T Consensus 180 i~p-----g~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~-~~~~~~l~~k~sL~e~~~li~~a~ 253 (334)
T COG0859 180 INP-----GASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKG-LPNAVILAGKTSLEELAALIAGAD 253 (334)
T ss_pred Eec-----cccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHh-cCCccccCCCCCHHHHHHHHhcCC
Confidence 444 5 442 4788999999999999997666554443211 1112 222222444333 433 777888
Q ss_pred cceeeccCCcchHHHHHhcCCcEeecc
Q 044218 319 IGGFWTHCGLNSTIESLYAGVPMLTFP 345 (436)
Q Consensus 319 ~~~~I~hgG~~s~~eal~~GvP~l~~P 345 (436)
+ +|+. -.|-++=|.+.|+|+|.+=
T Consensus 254 l--~I~~-DSg~~HlAaA~~~P~I~iy 277 (334)
T COG0859 254 L--VIGN-DSGPMHLAAALGTPTIALY 277 (334)
T ss_pred E--EEcc-CChHHHHHHHcCCCEEEEE
Confidence 8 7764 3578888999999998764
No 140
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.49 E-value=2.4 Score=40.28 Aligned_cols=104 Identities=14% Similarity=0.083 Sum_probs=70.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCee-EEecCCCCCCCCCCCCCHHHHHHHH
Q 044218 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIR-FRTLPNTIPSEHGRANDFAGFLEAV 93 (436)
Q Consensus 15 ~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~-~~~l~~~l~~~~~~~~~~~~~~~~~ 93 (436)
||+++-..+.|++.-..++.+.|++..++.+|++++.+.+.+.++... .++ +..++.. ......
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p---~id~v~~~~~~--------~~~~~~---- 65 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMP---EIRQAIDMPLG--------HGALEL---- 65 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCc---hhceeeecCCc--------ccchhh----
Confidence 589999999999999999999999988899999999987777766541 222 1112110 000000
Q ss_pred HHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEE
Q 044218 94 FTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVAS 145 (436)
Q Consensus 94 ~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~ 145 (436)
....+++..++.. ++|++|.-........++...|+|.-+
T Consensus 66 -----~~~~~~~~~lr~~-------~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 66 -----TERRRLGRSLREE-------RYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred -----hHHHHHHHHHhhc-------CCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 0112444555544 899999776555566677888888755
No 141
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=94.55 E-value=0.5 Score=39.87 Aligned_cols=96 Identities=11% Similarity=0.059 Sum_probs=54.1
Q ss_pred CCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCe
Q 044218 41 QPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPSEHGRANDFAGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAV 120 (436)
Q Consensus 41 ~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 120 (436)
|+||+|+|++........ . |++...+...-.... ........++.......... ..+.++++.+ +.|
T Consensus 1 q~gh~v~fl~~~~~~~~~--~----GV~~~~y~~~~~~~~-~~~~~~~~~e~~~~rg~av~-~a~~~L~~~G-----f~P 67 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP--P----GVRVVRYRPPRGPTP-GTHPYVRDFEAAVLRGQAVA-RAARQLRAQG-----FVP 67 (171)
T ss_pred CCCCEEEEEecCCCCCCC--C----CcEEEEeCCCCCCCC-CCCcccccHHHHHHHHHHHH-HHHHHHHHcC-----CCC
Confidence 589999999955444332 3 677777643111000 01111112222222222222 2333333332 279
Q ss_pred eEEEEcCCcchHHHHhHhc-CCCeEEEcch
Q 044218 121 TAIIADTYLPWVVDVGNRR-NIPVASLWTM 149 (436)
Q Consensus 121 D~vI~D~~~~~~~~~A~~~-gIP~v~~~~~ 149 (436)
|+||..+..-.++-+-+.+ ++|.+.+.-.
T Consensus 68 DvI~~H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 68 DVIIAHPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred CEEEEcCCcchhhhHHHhCCCCcEEEEEEE
Confidence 9999999888888899999 9999997543
No 142
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.17 E-value=0.13 Score=42.32 Aligned_cols=95 Identities=16% Similarity=0.105 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeccccccc--cCCCCCCCCeeEEecCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHH
Q 044218 28 NPMMNICKLLVSRQPDILITFVVTEEWLGF--IGSQSKPHNIRFRTLPNTIPSEHGRANDFAGFLEAVFTKMEAPFEELL 105 (436)
Q Consensus 28 ~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~--~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 105 (436)
.-+..|+++|.+ +||+|+++++...... .... ++.+..++-.-.. . ....... ...+..++
T Consensus 5 ~~~~~l~~~L~~--~G~~V~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~----~~~~~~~-----~~~~~~~l 67 (160)
T PF13579_consen 5 RYVRELARALAA--RGHEVTVVTPQPDPEDDEEEED----GVRVHRLPLPRRP--W----PLRLLRF-----LRRLRRLL 67 (160)
T ss_dssp HHHHHHHHHHHH--TT-EEEEEEE---GGG-SEEET----TEEEEEE--S-SS--S----GGGHCCH-----HHHHHHHC
T ss_pred HHHHHHHHHHHH--CCCEEEEEecCCCCcccccccC----CceEEeccCCccc--h----hhhhHHH-----HHHHHHHH
Confidence 346789999999 9999999997654442 2223 6777777621111 0 0000000 01223333
Q ss_pred HHhhcCCCCCCCCCeeEEEEcCCc-chHHHHhH-hcCCCeEEEc
Q 044218 106 DRLLLDDDEQPAAAVTAIIADTYL-PWVVDVGN-RRNIPVASLW 147 (436)
Q Consensus 106 ~~~~~~~~~~~~~~~D~vI~D~~~-~~~~~~A~-~~gIP~v~~~ 147 (436)
...+. +||+|.+.... .....+++ ..++|++...
T Consensus 68 -~~~~~-------~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 68 -AARRE-------RPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp -HHCT----------SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred -hhhcc-------CCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 11222 89999877532 23333444 8899999853
No 143
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=93.45 E-value=0.67 Score=46.10 Aligned_cols=104 Identities=16% Similarity=0.202 Sum_probs=70.4
Q ss_pred eccchhh---hccccCcceeec---cCCcc-hHHHHHhcCCc----EeeccccccchhhHHHHhhhhceeeEeecCCccc
Q 044218 306 PWCDQLR---VLCHASIGGFWT---HCGLN-STIESLYAGVP----MLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIAS 374 (436)
Q Consensus 306 ~~~pq~~---ll~~~~~~~~I~---hgG~~-s~~eal~~GvP----~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~ 374 (436)
+.+++.+ ++..+++ ++. +=|+| ++.||+++|+| +|+--+.+- +..+ +-|+.+++
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~~l----~~gllVnP----- 406 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQEL----NGALLVNP----- 406 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hHHh----CCcEEECC-----
Confidence 4555544 5777787 775 33655 77799999999 665554432 2222 34677776
Q ss_pred cCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044218 375 ERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDISR 435 (436)
Q Consensus 375 ~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 435 (436)
.+.+.++++|.++|+.+. ++-+++.+++.+.+. .-+...-.++|+++|.+
T Consensus 407 ---~d~~~lA~aI~~aL~~~~---~er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l~~ 456 (456)
T TIGR02400 407 ---YDIDGMADAIARALTMPL---EEREERHRAMMDKLR-----KNDVQRWREDFLSDLNS 456 (456)
T ss_pred ---CCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhhC
Confidence 489999999999998532 455666666666655 36777788888888753
No 144
>PLN02939 transferase, transferring glycosyl groups
Probab=93.27 E-value=1.4 Score=47.21 Aligned_cols=84 Identities=10% Similarity=0.108 Sum_probs=54.8
Q ss_pred CCCcEEeeccchh---hhccccCcceeeccC---C-cchHHHHHhcCCcEeeccccc--cchh--hHHHHhhhhceeeEe
Q 044218 299 DDRGIVVPWCDQL---RVLCHASIGGFWTHC---G-LNSTIESLYAGVPMLTFPLFW--DQVP--NSKQIVQDWKTGWRV 367 (436)
Q Consensus 299 ~~~~~v~~~~pq~---~ll~~~~~~~~I~hg---G-~~s~~eal~~GvP~l~~P~~~--DQ~~--na~~~~~~lG~G~~~ 367 (436)
.+++.+..+.+.. .+++.+++ ||.-. | -.+.+||+++|+|.|+....+ |.-. +...+.+.-+.|..+
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 3578888887764 47888888 88531 2 347899999999999876533 2211 111111111567777
Q ss_pred ecCCccccCccCHHHHHHHHHHHhc
Q 044218 368 KKPEIASERLVTRDEITELVKRFMD 392 (436)
Q Consensus 368 ~~~~~~~~~~~t~~~l~~~i~~ll~ 392 (436)
+. .+++.+.++|.+++.
T Consensus 914 ~~--------~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT--------PDEQGLNSALERAFN 930 (977)
T ss_pred cC--------CCHHHHHHHHHHHHH
Confidence 65 488999999988774
No 145
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=91.53 E-value=0.77 Score=45.81 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=64.0
Q ss_pred eeccchhh---hccccCcceeec---cCCcc-hHHHHHhcCCc----EeeccccccchhhHHHHhhhhceeeEeecCCcc
Q 044218 305 VPWCDQLR---VLCHASIGGFWT---HCGLN-STIESLYAGVP----MLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIA 373 (436)
Q Consensus 305 ~~~~pq~~---ll~~~~~~~~I~---hgG~~-s~~eal~~GvP----~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~ 373 (436)
.+++++.+ ++..+++ +|. +-|+| ++.||+++|+| +|+--+.+ -. .. ..-|+.+++
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G-~~---~~----~~~g~lv~p---- 411 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG-AA---EE----LSGALLVNP---- 411 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc-ch---hh----cCCCEEECC----
Confidence 36667544 5788888 773 44544 67899999999 44432221 11 10 134666776
Q ss_pred ccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 044218 374 SERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDI 433 (436)
Q Consensus 374 ~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 433 (436)
.+.+++.++|.++|+++. ++.+++.++.++.+. .-+...-.++++++|
T Consensus 412 ----~d~~~la~ai~~~l~~~~---~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 ----YDIDEVADAIHRALTMPL---EERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred ----CCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 489999999999998632 233333333444433 467777788888765
No 146
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=90.26 E-value=0.79 Score=38.80 Aligned_cols=114 Identities=15% Similarity=0.122 Sum_probs=57.7
Q ss_pred EEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccc--c---CCCCCCCCeeEEecCCCCCCCCCCCCCHHHHHHH
Q 044218 18 ALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGF--I---GSQSKPHNIRFRTLPNTIPSEHGRANDFAGFLEA 92 (436)
Q Consensus 18 ~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~--~---~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~~~~ 92 (436)
++..++.||+.=|+.|.+.+......++..+++....... + ++.... ...+..+|..... . ......
T Consensus 2 l~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~-~~~~~~~~r~r~v-----~--q~~~~~ 73 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSK-RHKILEIPRAREV-----G--QSYLTS 73 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccc-cceeeccceEEEe-----c--hhhHhh
Confidence 3456788999999999999933213445444544333222 1 111000 1133344311100 0 011111
Q ss_pred HHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCC--cchHHHHhHhc------CCCeEEEc
Q 044218 93 VFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTY--LPWVVDVGNRR------NIPVASLW 147 (436)
Q Consensus 93 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~--~~~~~~~A~~~------gIP~v~~~ 147 (436)
.+......+.. +.-+... +||+||+.+- +.+...+|..+ |.+.|.+-
T Consensus 74 ~~~~l~~~~~~-~~il~r~-------rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIE 128 (170)
T PF08660_consen 74 IFTTLRAFLQS-LRILRRE-------RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIE 128 (170)
T ss_pred HHHHHHHHHHH-HHHHHHh-------CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEE
Confidence 11222222221 1222222 8999999864 47777888998 99998863
No 147
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=90.25 E-value=1 Score=39.09 Aligned_cols=116 Identities=15% Similarity=0.100 Sum_probs=60.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCC-CCCeeEEecCCCC-CC---CCCCCCCHHH
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSK-PHNIRFRTLPNTI-PS---EHGRANDFAG 88 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~-~~~i~~~~l~~~l-~~---~~~~~~~~~~ 88 (436)
|||++.-=-+. +.--+.+|+++|.+ .||+|+++.|.....-.-.... ...++......+. +. .+.-.+.+..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~--~g~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaD 77 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSA--LGHDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPAD 77 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTT--TSSEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHH
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHh--cCCeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHH
Confidence 56666655444 44456789999977 7899999999876654332222 2234443331111 00 1111233443
Q ss_pred HHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcC----------Cc---chHHHHhHhcCCCeEEEcch
Q 044218 89 FLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADT----------YL---PWVVDVGNRRNIPVASLWTM 149 (436)
Q Consensus 89 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~----------~~---~~~~~~A~~~gIP~v~~~~~ 149 (436)
.....+ ..+... . +||+||+-. ++ ..+..-|..+|||.+.++..
T Consensus 78 cv~~al-----------~~~~~~----~--~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 78 CVKLAL-----------DGLLPD----K--KPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp HHHHHH-----------HCTSTT----S--S-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEE
T ss_pred HHHHHH-----------Hhhhcc----C--CCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecc
Confidence 333322 222222 1 699999642 12 33455556889999998653
No 148
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.92 E-value=2.8 Score=34.79 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=48.3
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCC
Q 044218 11 TSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPN 74 (436)
Q Consensus 11 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~ 74 (436)
..+|+|++...|+-|-..-++.|++.|.+ .|+.|-=+.++.-.+-=... ||+.+.+..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~--~g~kvgGf~t~EVR~gGkR~----GF~Ivdl~t 60 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLRE--KGYKVGGFITPEVREGGKRI----GFKIVDLAT 60 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHh--cCceeeeEEeeeeecCCeEe----eeEEEEccC
Confidence 45799999999999999999999999999 99999877776655444445 888888863
No 149
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=89.85 E-value=2.9 Score=34.80 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=24.9
Q ss_pred CccChHHHHHHHHHHHhCCCCcEEEEEecccccc
Q 044218 23 GRGHVNPMMNICKLLVSRQPDILITFVVTEEWLG 56 (436)
Q Consensus 23 ~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~ 56 (436)
..|=-.-+..|+++|++ +||+|+++++.....
T Consensus 11 ~GG~e~~~~~l~~~l~~--~G~~v~v~~~~~~~~ 42 (177)
T PF13439_consen 11 IGGAERVVLNLARALAK--RGHEVTVVSPGVKDP 42 (177)
T ss_dssp SSHHHHHHHHHHHHHHH--TT-EEEEEESS-TTS
T ss_pred CChHHHHHHHHHHHHHH--CCCEEEEEEcCCCcc
Confidence 55667788999999999 999999998764443
No 150
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=88.52 E-value=2.8 Score=41.24 Aligned_cols=144 Identities=13% Similarity=0.154 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhCCCeEEEEEcC------CCCc------cccccc--CCCcEEe--eccch--hhhccccCcceeeccCCc
Q 044218 267 QMDEIIAGIRNSGVRYLWVTRG------DTSR------FKDGHA--DDRGIVV--PWCDQ--LRVLCHASIGGFWTHCGL 328 (436)
Q Consensus 267 ~~~~l~~al~~~~~~~i~~~~~------~~~~------~~~~~~--~~~~~v~--~~~pq--~~ll~~~~~~~~I~hgG~ 328 (436)
.+..+++.+.+.|+++++.... ..++ +.+. + +.+++++ ++-+. ..++.++++ +|..==+
T Consensus 261 ~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~-~~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~RlH 337 (426)
T PRK10017 261 AFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQH-VSDPARYHVVMDELNDLEMGKILGACEL--TVGTRLH 337 (426)
T ss_pred HHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHh-cccccceeEecCCCChHHHHHHHhhCCE--EEEecch
Confidence 3445566665668887765421 1111 1111 2 2334443 23343 257888877 8843222
Q ss_pred chHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeE-eecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHH
Q 044218 329 NSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWR-VKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRARE 407 (436)
Q Consensus 329 ~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~-~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~ 407 (436)
++.-|+.+|||.+.++. |+...+- ++ .+|..-. .+. ..++.++|.+.+.+++++. +.+++..++
T Consensus 338 -a~I~a~~~gvP~i~i~Y--~~K~~~~-~~-~lg~~~~~~~~------~~l~~~~Li~~v~~~~~~r----~~~~~~l~~ 402 (426)
T PRK10017 338 -SAIISMNFGTPAIAINY--EHKSAGI-MQ-QLGLPEMAIDI------RHLLDGSLQAMVADTLGQL----PALNARLAE 402 (426)
T ss_pred -HHHHHHHcCCCEEEeee--hHHHHHH-HH-HcCCccEEech------hhCCHHHHHHHHHHHHhCH----HHHHHHHHH
Confidence 56678899999999996 4444433 44 4477644 454 3378999999999999885 677777666
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044218 408 VQEICREAAAENGSSITNLDAFLKDIS 434 (436)
Q Consensus 408 l~~~~~~a~~~~g~~~~~~~~~~~~~~ 434 (436)
.-+++++ .+.+.++++++.+-
T Consensus 403 ~v~~~r~------~~~~~~~~~~~~~~ 423 (426)
T PRK10017 403 AVSRERQ------TGMQMVQSVLERIG 423 (426)
T ss_pred HHHHHHH------HHHHHHHHHHHHhc
Confidence 6666664 45566777777664
No 151
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=88.34 E-value=1.7 Score=44.04 Aligned_cols=74 Identities=16% Similarity=0.313 Sum_probs=55.1
Q ss_pred CCcEEeeccc--hhh-hccccCcceeeccC---CcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCcc
Q 044218 300 DRGIVVPWCD--QLR-VLCHASIGGFWTHC---GLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIA 373 (436)
Q Consensus 300 ~~~~v~~~~p--q~~-ll~~~~~~~~I~hg---G~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~ 373 (436)
+++.+.++.. +.. .+..+.+ +|.=+ |.++..||+.+|+|+| .......|++. .=|..+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li-~---- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYII-D---- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEe-C----
Confidence 5677788888 433 6777777 88765 6779999999999999 33344555544 556555 3
Q ss_pred ccCccCHHHHHHHHHHHhcc
Q 044218 374 SERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 374 ~~~~~t~~~l~~~i~~ll~~ 393 (436)
+..+|.++|..+|.+
T Consensus 474 -----d~~~l~~al~~~L~~ 488 (519)
T TIGR03713 474 -----DISELLKALDYYLDN 488 (519)
T ss_pred -----CHHHHHHHHHHHHhC
Confidence 789999999999987
No 152
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=88.07 E-value=1.7 Score=46.51 Aligned_cols=100 Identities=14% Similarity=0.215 Sum_probs=64.9
Q ss_pred hhccccCcceeecc---CCcc-hHHHHHhcCCc---EeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHH
Q 044218 312 RVLCHASIGGFWTH---CGLN-STIESLYAGVP---MLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEIT 384 (436)
Q Consensus 312 ~ll~~~~~~~~I~h---gG~~-s~~eal~~GvP---~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~ 384 (436)
.++..+++ ||.- =|+| +..|++++|+| +++++-+. ..+..+. .-|+.+++ .+.+.++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~~l~---~~allVnP--------~D~~~lA 434 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQSLG---AGALLVNP--------WNITEVS 434 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchhhhc---CCeEEECC--------CCHHHHH
Confidence 47777887 7744 4777 56699999999 44444322 2222221 25788887 5899999
Q ss_pred HHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044218 385 ELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDISR 435 (436)
Q Consensus 385 ~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 435 (436)
++|.++|+... ++-+++.+++.+.+++ -+...-.+.|++.+.+
T Consensus 435 ~AI~~aL~m~~---~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~ 477 (797)
T PLN03063 435 SAIKEALNMSD---EERETRHRHNFQYVKT-----HSAQKWADDFMSELND 477 (797)
T ss_pred HHHHHHHhCCH---HHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHH
Confidence 99999998421 3444555556555553 4666667777776653
No 153
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=87.81 E-value=0.79 Score=44.25 Aligned_cols=144 Identities=11% Similarity=0.158 Sum_probs=76.3
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCC-Cccc--ccccCCCcEEe-eccchhhhccccCcceeeccCCcchHHHHHhcCCcEee
Q 044218 268 MDEIIAGIRNSGVRYLWVTRGDT-SRFK--DGHADDRGIVV-PWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLT 343 (436)
Q Consensus 268 ~~~l~~al~~~~~~~i~~~~~~~-~~~~--~~~~~~~~~v~-~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~ 343 (436)
...+. .+.+.++.+++...... .... .. ..+++..+ ...+-.++|..+++ +||--. +.+.|.+..++|++.
T Consensus 219 ~~~l~-~~~~~~~~li~k~Hp~~~~~~~~~~~-~~~~i~~~~~~~~~~~ll~~aDi--LITDyS-Si~fD~~~l~KPiif 293 (369)
T PF04464_consen 219 FEKLN-FLLKNNYVLIIKPHPNMKKKFKDFKE-DNSNIIFVSDNEDIYDLLAAADI--LITDYS-SIIFDFLLLNKPIIF 293 (369)
T ss_dssp HHHHH-HHHTTTEEEEE--SHHHHTT----TT--TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEE
T ss_pred HHHHH-HHhCCCcEEEEEeCchhhhchhhhhc-cCCcEEECCCCCCHHHHHHhcCE--EEEech-hHHHHHHHhCCCEEE
Confidence 44444 66667777666554321 1111 11 24566665 44456779999999 999984 488899999999999
Q ss_pred ccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChH
Q 044218 344 FPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSI 423 (436)
Q Consensus 344 ~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~ 423 (436)
+....|..... + |.-..... ..-+...-|.++|.++|..++++. ..++++.++..+++.. ..+|.++.
T Consensus 294 y~~D~~~Y~~~-----r-g~~~~~~~-~~pg~~~~~~~eL~~~i~~~~~~~----~~~~~~~~~~~~~~~~-~~Dg~s~e 361 (369)
T PF04464_consen 294 YQPDLEEYEKE-----R-GFYFDYEE-DLPGPIVYNFEELIEAIENIIENP----DEYKEKREKFRDKFFK-YNDGNSSE 361 (369)
T ss_dssp E-TTTTTTTTT-----S-SBSS-TTT-SSSS-EESSHHHHHHHHTTHHHHH----HHTHHHHHHHHHHHST-T--S-HHH
T ss_pred EeccHHHHhhc-----c-CCCCchHh-hCCCceeCCHHHHHHHHHhhhhCC----HHHHHHHHHHHHHhCC-CCCchHHH
Confidence 88777665322 1 33222111 110112247899999999988762 4555666666666643 22344444
Q ss_pred HHHHH
Q 044218 424 TNLDA 428 (436)
Q Consensus 424 ~~~~~ 428 (436)
+.++.
T Consensus 362 ri~~~ 366 (369)
T PF04464_consen 362 RIVNY 366 (369)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 154
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=84.78 E-value=6.3 Score=37.07 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=35.0
Q ss_pred CcEEEEEcC-CCccChHHHHHHHHHHHhCCCCcEEEEEeccccccc
Q 044218 13 LCHVLALPY-PGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGF 57 (436)
Q Consensus 13 ~~~vl~~~~-~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~ 57 (436)
++||+|++. |+-|=..-..++|-.|++ .|..|.++++++.+..
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~--~g~kvLlvStDPAhsL 44 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAE--SGKKVLLVSTDPAHSL 44 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHH--cCCcEEEEEeCCCCch
Confidence 357777666 788999999999999999 9988888888766653
No 155
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=84.74 E-value=22 Score=32.29 Aligned_cols=114 Identities=12% Similarity=0.070 Sum_probs=60.6
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCC-CCCeeEEecC-C-CCCCCCCCCCCHHH
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSK-PHNIRFRTLP-N-TIPSEHGRANDFAG 88 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~-~~~i~~~~l~-~-~l~~~~~~~~~~~~ 88 (436)
++|||++.-=-+. |.--+.+|+++|.+ .| +|+++.|.....-.-.... ...+++..+. + +.. .+.-.+.+..
T Consensus 4 ~~M~ILltNDDGi-~a~Gi~aL~~~l~~--~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~-~y~v~GTPaD 78 (257)
T PRK13932 4 KKPHILVCNDDGI-EGEGIHVLAASMKK--IG-RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFF-GYTVSGTPVD 78 (257)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHh--CC-CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCce-EEEEcCcHHH
Confidence 4578887654333 22346688999988 78 7988888765543322211 2245555543 1 110 0111223333
Q ss_pred HHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcC----------Cc---chHHHHhHhcCCCeEEEcc
Q 044218 89 FLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADT----------YL---PWVVDVGNRRNIPVASLWT 148 (436)
Q Consensus 89 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~----------~~---~~~~~~A~~~gIP~v~~~~ 148 (436)
..... +..+... +||+||+-. ++ ..|..-|..+|||.+.++.
T Consensus 79 CV~la-----------l~~~~~~-------~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 79 CIKVA-----------LSHILPE-------KPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred HHHHH-----------HHhhcCC-------CCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 32222 1222222 799998643 12 3344555788999999864
No 156
>PRK14099 glycogen synthase; Provisional
Probab=84.50 E-value=15 Score=37.00 Aligned_cols=39 Identities=13% Similarity=0.097 Sum_probs=30.7
Q ss_pred CCcEEEEEcCC------CccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 12 SLCHVLALPYP------GRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 12 ~~~~vl~~~~~------~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
++|||+|++.- +.|=-.-.-+|.++|++ +||+|.++.|.
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~--~g~~v~v~~P~ 46 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKA--HGVEVRTLVPG 46 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHH--CCCcEEEEeCC
Confidence 46899998763 34555556788999999 99999999984
No 157
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.50 E-value=2.9 Score=38.31 Aligned_cols=91 Identities=12% Similarity=0.089 Sum_probs=62.1
Q ss_pred CCCcEEe-eccchhhhccccCcceeeccCCcchHHH-HHhcCCcEeeccccccchh--hHHHHhhhhceeeEeecCCccc
Q 044218 299 DDRGIVV-PWCDQLRVLCHASIGGFWTHCGLNSTIE-SLYAGVPMLTFPLFWDQVP--NSKQIVQDWKTGWRVKKPEIAS 374 (436)
Q Consensus 299 ~~~~~v~-~~~pq~~ll~~~~~~~~I~hgG~~s~~e-al~~GvP~l~~P~~~DQ~~--na~~~~~~lG~G~~~~~~~~~~ 374 (436)
.+|.++. .|-...++|.++++ .|--.| |..| ++-.|||+|.+|-.+-|+. -|++=.+.||..+.+-.
T Consensus 293 kdnc~l~lsqqsfadiLH~ada--algmAG--TAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~----- 363 (412)
T COG4370 293 KDNCSLWLSQQSFADILHAADA--ALGMAG--TATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR----- 363 (412)
T ss_pred cCceEEEEeHHHHHHHHHHHHH--HHHhcc--chHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-----
Confidence 3566665 66667778877777 665554 4444 5668999999999999876 46666667788877765
Q ss_pred cCccCHHHHHHHH-HHHhccCccchHHHHHHHHH
Q 044218 375 ERLVTRDEITELV-KRFMDLNSDERKEMSKRARE 407 (436)
Q Consensus 375 ~~~~t~~~l~~~i-~~ll~~~~~~~~~~~~~a~~ 407 (436)
.++...+.+ +++|.| +.+..+++.
T Consensus 364 ----~~aq~a~~~~q~ll~d-----p~r~~air~ 388 (412)
T COG4370 364 ----PEAQAAAQAVQELLGD-----PQRLTAIRH 388 (412)
T ss_pred ----CchhhHHHHHHHHhcC-----hHHHHHHHh
Confidence 334444444 449988 777665553
No 158
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=84.13 E-value=37 Score=31.86 Aligned_cols=94 Identities=17% Similarity=0.069 Sum_probs=55.1
Q ss_pred eEEecCCCCCCCCCc--ccChHHH----HHHHHHHHhCCCeEEEEEcCCC-C----ccccccc--CCCcEEe---eccch
Q 044218 247 VLLAQFCTSHWEAFY--SVSSAQM----DEIIAGIRNSGVRYLWVTRGDT-S----RFKDGHA--DDRGIVV---PWCDQ 310 (436)
Q Consensus 247 ~~~vGpl~~~wGS~~--~~~~~~~----~~l~~al~~~~~~~i~~~~~~~-~----~~~~~~~--~~~~~v~---~~~pq 310 (436)
.+.|| |+-. ..+.+.. ..+.+.++..+..+.++++... . .+.+. . ...+.+. +.=|+
T Consensus 150 avLIG------G~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~-~~~~~~~~~~~~~~~nPy 222 (311)
T PF06258_consen 150 AVLIG------GDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAEAALREL-LKDNPGVYIWDGTGENPY 222 (311)
T ss_pred EEEEC------cCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHh-hcCCCceEEecCCCCCcH
Confidence 56788 6543 3455533 3344444455656666655422 1 11222 2 1233232 33457
Q ss_pred hhhccccCcceeeccCCcchHHHHHhcCCcEeeccccc
Q 044218 311 LRVLCHASIGGFWTHCGLNSTIESLYAGVPMLTFPLFW 348 (436)
Q Consensus 311 ~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~ 348 (436)
...|..++. .+||-=-.+-+.||+..|+|+.++|...
T Consensus 223 ~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 223 LGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred HHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 778877776 2455555778899999999999999876
No 159
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=83.82 E-value=33 Score=31.03 Aligned_cols=89 Identities=13% Similarity=0.187 Sum_probs=56.8
Q ss_pred eEEecCCCCCCCCCcc--cChHH----HHHHHHHHHhCCCeEEEEEcCCCC-cc----cccccCC------CcEEeeccc
Q 044218 247 VLLAQFCTSHWEAFYS--VSSAQ----MDEIIAGIRNSGVRYLWVTRGDTS-RF----KDGHADD------RGIVVPWCD 309 (436)
Q Consensus 247 ~~~vGpl~~~wGS~~~--~~~~~----~~~l~~al~~~~~~~i~~~~~~~~-~~----~~~~~~~------~~~v~~~~p 309 (436)
.+.|| |+-.. .+++. ...+.+.+++.|.+|+++.+.... .. .+. +.. |-+-.++-|
T Consensus 165 AVlVG------g~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~-l~s~~~i~w~~~d~g~NP 237 (329)
T COG3660 165 AVLVG------GNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRTPDTVKSILKNN-LNSSPGIVWNNEDTGYNP 237 (329)
T ss_pred EEEec------CCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcHHHHHHHHhc-cccCceeEeCCCCCCCCc
Confidence 47888 76542 33333 445677888899999998765421 11 111 121 222236678
Q ss_pred hhhhccccCcceeeccCC-cchHHHHHhcCCcEeec
Q 044218 310 QLRVLCHASIGGFWTHCG-LNSTIESLYAGVPMLTF 344 (436)
Q Consensus 310 q~~ll~~~~~~~~I~hgG-~~s~~eal~~GvP~l~~ 344 (436)
+.+.|..++. +|.-.. .|-..||...|+|+-++
T Consensus 238 Y~~~La~Ady--ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 238 YIDMLAAADY--IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred hHHHHhhcce--EEEecchhhhhHHHhccCCCeEEE
Confidence 9998877766 665554 67778999999998554
No 160
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=81.96 E-value=7.1 Score=38.60 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=73.2
Q ss_pred ChHHHHHHHHHHHhCC-CeEEEEEcCC-CCccc--ccccCCCcEEe-eccc-h-hhhccccCcceeeccCC--cchHHHH
Q 044218 264 SSAQMDEIIAGIRNSG-VRYLWVTRGD-TSRFK--DGHADDRGIVV-PWCD-Q-LRVLCHASIGGFWTHCG--LNSTIES 334 (436)
Q Consensus 264 ~~~~~~~l~~al~~~~-~~~i~~~~~~-~~~~~--~~~~~~~~~v~-~~~p-q-~~ll~~~~~~~~I~hgG--~~s~~ea 334 (436)
+.+.+..+.....+++ +.|=+..+.. ...+. ++ . +|+.+. ++.+ + ..++..|++=.-|+||. ..++.||
T Consensus 290 ~s~~I~~i~~Lv~~lPd~~f~Iga~te~s~kL~~L~~-y-~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA 367 (438)
T TIGR02919 290 NSDQIEHLEEIVQALPDYHFHIAALTEMSSKLMSLDK-Y-DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRA 367 (438)
T ss_pred CHHHHHHHHHHHHhCCCcEEEEEecCcccHHHHHHHh-c-CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHH
Confidence 3566666666666654 4444333332 11121 33 2 566665 7777 4 34999999977788876 6689999
Q ss_pred HhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 335 LYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 335 l~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
+.+|+|++.+=...... ..+. . |-.... -+.+++.++|.++|++
T Consensus 368 ~~~G~pI~afd~t~~~~---~~i~---~-g~l~~~--------~~~~~m~~~i~~lL~d 411 (438)
T TIGR02919 368 FEYNLLILGFEETAHNR---DFIA---S-ENIFEH--------NEVDQLISKLKDLLND 411 (438)
T ss_pred HHcCCcEEEEecccCCc---cccc---C-CceecC--------CCHHHHHHHHHHHhcC
Confidence 99999999987553322 2222 1 444444 3789999999999988
No 161
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=81.91 E-value=1.7 Score=34.92 Aligned_cols=45 Identities=9% Similarity=0.027 Sum_probs=37.5
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCC
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQ 61 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~ 61 (436)
|||++...|+.+=+. ...+.++|++ .|++|.++.++...+.+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~--~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKR--AGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHT--TTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhh--CCCEEEEEECCcHHHHhhhh
Confidence 688888888877777 9999999999 99999999999887776655
No 162
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=81.31 E-value=34 Score=29.35 Aligned_cols=57 Identities=16% Similarity=0.300 Sum_probs=38.8
Q ss_pred CcEEEEEcC---C-CccChHHHH-HHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecC
Q 044218 13 LCHVLALPY---P-GRGHVNPMM-NICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLP 73 (436)
Q Consensus 13 ~~~vl~~~~---~-~~GH~~p~l-~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~ 73 (436)
|.||+++.. | .+|=+.-++ .|+..|++ +||+||++|.....+.-.. .-.|++...+|
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~--~g~~v~Vyc~~~~~~~~~~--~y~gv~l~~i~ 62 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVS--KGIDVTVYCRSDYYPYKEF--EYNGVRLVYIP 62 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhc--CCceEEEEEccCCCCCCCc--ccCCeEEEEeC
Confidence 578888765 3 356666666 68889988 9999999998765532221 11266777775
No 163
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=80.64 E-value=20 Score=33.05 Aligned_cols=79 Identities=15% Similarity=0.277 Sum_probs=51.0
Q ss_pred CCcEEeeccch---hhhccccCcceeecc---CCcch-HHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCc
Q 044218 300 DRGIVVPWCDQ---LRVLCHASIGGFWTH---CGLNS-TIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEI 372 (436)
Q Consensus 300 ~~~~v~~~~pq---~~ll~~~~~~~~I~h---gG~~s-~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~ 372 (436)
+++.+.+++++ ..++..+++ ++.- .|.|. +.||+++|+|++.... ......+.+. +.|. +.. .
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~~~~-~~g~-~~~-~- 326 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVVEDG-ETGL-LVP-P- 326 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHhcCC-CceE-ecC-C-
Confidence 56778888882 235666666 6655 35543 5999999999966553 3333333322 2466 333 1
Q ss_pred cccCccCHHHHHHHHHHHhcc
Q 044218 373 ASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 373 ~~~~~~t~~~l~~~i~~ll~~ 393 (436)
.+.+++.+++..++++
T Consensus 327 -----~~~~~~~~~i~~~~~~ 342 (381)
T COG0438 327 -----GDVEELADALEQLLED 342 (381)
T ss_pred -----CCHHHHHHHHHHHhcC
Confidence 1589999999999887
No 164
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=80.34 E-value=3.4 Score=32.52 Aligned_cols=40 Identities=3% Similarity=-0.086 Sum_probs=28.3
Q ss_pred cEEEEEcCCCcc---ChHHHHHHHHHHHhCCCCcEEEEEeccccc
Q 044218 14 CHVLALPYPGRG---HVNPMMNICKLLVSRQPDILITFVVTEEWL 55 (436)
Q Consensus 14 ~~vl~~~~~~~G---H~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~ 55 (436)
|||+|+.-|-.+ .-.-.++++.+-.+ |||+|.++......
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~--RGhev~~~~~~dL~ 43 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQR--RGHEVFYYEPGDLS 43 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHH--TT-EEEEE-GGGEE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHH--CCCEEEEEEcCcEE
Confidence 678888887554 44678899999999 99999999877554
No 165
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=79.60 E-value=4.8 Score=42.82 Aligned_cols=110 Identities=14% Similarity=0.112 Sum_probs=66.0
Q ss_pred Eeeccchhh---hccccCcceeecc---CCcc-hHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccC
Q 044218 304 VVPWCDQLR---VLCHASIGGFWTH---CGLN-STIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASER 376 (436)
Q Consensus 304 v~~~~pq~~---ll~~~~~~~~I~h---gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~ 376 (436)
+.+++++.+ +++.+++ ++.- -|+| ++.|++++|+|-...|+..+--.=+..+ .-|+.+++
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv~P------- 412 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLVNP------- 412 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEECC-------
Confidence 446777654 6777777 7653 3544 6779999977522222211111111112 23777777
Q ss_pred ccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044218 377 LVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDISR 435 (436)
Q Consensus 377 ~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 435 (436)
.+.+.++++|.++|+... ++.+++.+++.+.++ .-+...-.++|++.+.+
T Consensus 413 -~d~~~la~ai~~~l~~~~---~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~ 462 (726)
T PRK14501 413 -NDIEGIAAAIKRALEMPE---EEQRERMQAMQERLR-----RYDVHKWASDFLDELRE 462 (726)
T ss_pred -CCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHH
Confidence 589999999999997531 344444455555543 35777778888877754
No 166
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=78.88 E-value=8.7 Score=29.17 Aligned_cols=33 Identities=21% Similarity=0.136 Sum_probs=23.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEec
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVT 51 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~ 51 (436)
|||+++..|++-| +||+.|.+..+..+|.++-.
T Consensus 1 MkVLviGsGgREH-----Aia~~l~~s~~v~~v~~aPG 33 (100)
T PF02844_consen 1 MKVLVIGSGGREH-----AIAWKLSQSPSVEEVYVAPG 33 (100)
T ss_dssp EEEEEEESSHHHH-----HHHHHHTTCTTEEEEEEEE-
T ss_pred CEEEEECCCHHHH-----HHHHHHhcCCCCCEEEEeCC
Confidence 7999999999998 68999988433344444433
No 167
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=78.26 E-value=4.2 Score=34.98 Aligned_cols=101 Identities=20% Similarity=0.216 Sum_probs=50.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEec-cccccccCCCCCCCCeeEEecCCCCCCCCCCCCCHHHHHHHH
Q 044218 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVT-EEWLGFIGSQSKPHNIRFRTLPNTIPSEHGRANDFAGFLEAV 93 (436)
Q Consensus 15 ~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~-~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~~~~~ 93 (436)
.++-+=..+-|-++-..+|+++|++..+|+.|.+-++ +...+.+++...+ .+....+|-+
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~-~v~~~~~P~D------------------ 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD-RVDVQYLPLD------------------ 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG-G-SEEE---S------------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC-CeEEEEeCcc------------------
Confidence 4444556678999999999999999545999988765 4444434332111 2222224321
Q ss_pred HHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCc--chHHHHhHhcCCCeEEEc
Q 044218 94 FTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYL--PWVVDVGNRRNIPVASLW 147 (436)
Q Consensus 94 ~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~--~~~~~~A~~~gIP~v~~~ 147 (436)
....++.+++.+ +||++|.-... +.-+..|++.|||.+++.
T Consensus 83 ---~~~~~~rfl~~~----------~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 83 ---FPWAVRRFLDHW----------RPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp ---SHHHHHHHHHHH------------SEEEEES----HHHHHH-----S-EEEEE
T ss_pred ---CHHHHHHHHHHh----------CCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 222345667777 89998755433 444456788899999974
No 168
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=77.91 E-value=8.2 Score=39.21 Aligned_cols=80 Identities=13% Similarity=0.039 Sum_probs=47.1
Q ss_pred hhhhccccCcceeec---cCCc-chHHHHHhcCCcEeeccccc-cchhhHHHHhhhhceeeEeecCCccccCccCHHHHH
Q 044218 310 QLRVLCHASIGGFWT---HCGL-NSTIESLYAGVPMLTFPLFW-DQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEIT 384 (436)
Q Consensus 310 q~~ll~~~~~~~~I~---hgG~-~s~~eal~~GvP~l~~P~~~-DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~ 384 (436)
..++++.|++ +|. +=|+ -++.||+++|+|+|+....+ ..... ..+...-..|+.+..+.. .+-.-+.++|.
T Consensus 468 y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~-~~~~e~v~~La 543 (590)
T cd03793 468 YEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRF-KSPDESVQQLT 543 (590)
T ss_pred hHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCc-cchHHHHHHHH
Confidence 5567777888 665 3454 48899999999999987642 22221 111111015777764111 11123677888
Q ss_pred HHHHHHhcc
Q 044218 385 ELVKRFMDL 393 (436)
Q Consensus 385 ~~i~~ll~~ 393 (436)
+++.++++.
T Consensus 544 ~~m~~~~~~ 552 (590)
T cd03793 544 QYMYEFCQL 552 (590)
T ss_pred HHHHHHhCC
Confidence 888888754
No 169
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=76.36 E-value=7.8 Score=33.79 Aligned_cols=39 Identities=10% Similarity=-0.039 Sum_probs=35.3
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
...+|++.+.++-.|-....=++..|+. .|++|+++...
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~--~G~~vi~lG~~ 119 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEA--NGFEVIDLGRD 119 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHH--CCCEEEECCCC
Confidence 3679999999999999999999999999 99999988754
No 170
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=76.06 E-value=61 Score=29.34 Aligned_cols=96 Identities=10% Similarity=0.033 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeccccccccCCCCC-CCCeeEEecCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHH
Q 044218 29 PMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSK-PHNIRFRTLPNTIPSEHGRANDFAGFLEAVFTKMEAPFEELLDR 107 (436)
Q Consensus 29 p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~-~~~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 107 (436)
-+.+|+++|.+ . |+|+++.|.....-+-.... ...+++..+.++ .+...+.+.......+ ..
T Consensus 15 Gi~aL~~~l~~--~-~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~---~~~v~GTPaDcV~~gl-----------~~ 77 (250)
T PRK00346 15 GIRALAEALRE--L-ADVTVVAPDRERSGASHSLTLTRPLRVEKVDNG---FYAVDGTPTDCVHLAL-----------NG 77 (250)
T ss_pred hHHHHHHHHHh--C-CCEEEEeCCCCCcCCcccccCCCCeEEEEecCC---eEEECCcHHHHHHHHH-----------Hh
Confidence 36688999988 7 79999988765543332211 224555554321 1111223333333222 22
Q ss_pred hhcCCCCCCCCCeeEEEEcC----------Cc---chHHHHhHhcCCCeEEEcc
Q 044218 108 LLLDDDEQPAAAVTAIIADT----------YL---PWVVDVGNRRNIPVASLWT 148 (436)
Q Consensus 108 ~~~~~~~~~~~~~D~vI~D~----------~~---~~~~~~A~~~gIP~v~~~~ 148 (436)
+... +||+||+-. ++ ..|..-|-..|||.+.++.
T Consensus 78 l~~~-------~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 78 LLDP-------KPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred hccC-------CCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 2222 799998643 12 3344455688999999864
No 171
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=75.47 E-value=62 Score=29.51 Aligned_cols=111 Identities=9% Similarity=-0.008 Sum_probs=56.7
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCC-CCCeeEEecCC-CCCCCCCCCCCHHHHHH
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSK-PHNIRFRTLPN-TIPSEHGRANDFAGFLE 91 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~-~~~i~~~~l~~-~l~~~~~~~~~~~~~~~ 91 (436)
|||++.-=-+. |.--+.+|+++|.+ .| +|+++.|.....-.-.... ...++...+.. +. ..+...+.+.....
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~--~g-~V~VvAP~~eqSg~g~aiT~~~pl~~~~~~~~~~-~~y~v~GTPaDCV~ 75 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSP--LG-EVDVVAPETPKSATGLGITLHKPLRMYEVDLCGF-KVYATSGTPSDTIY 75 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHh--CC-cEEEEccCCCCccccccccCCCCcEEEEeccCCc-ceEEeCCCHHHHHH
Confidence 34544443332 33456788999988 77 7998888765543322111 22345544431 11 01111233333333
Q ss_pred HHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEE----------c-CCc---chHHHHhHhcCCCeEEEcc
Q 044218 92 AVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIA----------D-TYL---PWVVDVGNRRNIPVASLWT 148 (436)
Q Consensus 92 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~----------D-~~~---~~~~~~A~~~gIP~v~~~~ 148 (436)
... ..+ .. +||+||+ | .++ ..|..-|..+|||.+.++.
T Consensus 76 lal-----------~~l-~~-------~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 76 LAT-----------YGL-GR-------KYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred HHH-----------Hhc-cC-------CCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEec
Confidence 221 222 22 8999985 3 222 2344445688999999864
No 172
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=75.31 E-value=5.5 Score=36.17 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=40.8
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCC
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQ 61 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~ 61 (436)
+...++|...|+.|=..=..+||.+|.+ +|+.|+|++.+.+...+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~--~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLK--AGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEEHHHHHHHHHHH
Confidence 4567899999999988899999999998 99999999998777655543
No 173
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=75.22 E-value=63 Score=29.30 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=24.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccccc
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLG 56 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~ 56 (436)
||||+.-=-+. |.--..+|+++|++ +|+|+++.|.....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~---~~~V~VvAP~~~qS 39 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE---KHEVFVVAPDKERS 39 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh---CCcEEEEccCCCCc
Confidence 35555443333 23336678888855 67999998876554
No 174
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=75.18 E-value=19 Score=32.72 Aligned_cols=35 Identities=26% Similarity=0.079 Sum_probs=24.7
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccc
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWL 55 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~ 55 (436)
|+|+++..-+. -..|++.|.+ +||+|+..+...+.
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~--~g~~v~~s~~t~~~ 35 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIA--QGIEILVTVTTSEG 35 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHh--CCCeEEEEEccCCc
Confidence 45655543222 5689999999 99999987766544
No 175
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=75.02 E-value=30 Score=32.04 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=69.0
Q ss_pred CCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCC-----------CCCCCeeEEecCCCCCC
Q 044218 10 PTSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQ-----------SKPHNIRFRTLPNTIPS 78 (436)
Q Consensus 10 ~~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~-----------~~~~~i~~~~l~~~l~~ 78 (436)
++...+|.+...|+-|--.-.=+|.++|.+ +||.|-++.-++...+.-.. ....++=+.++|.
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~--~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~s---- 121 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRE--RGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPS---- 121 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHH--CCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCC----
Confidence 345678899999999999999999999999 99999998866655432221 1122333333331
Q ss_pred CCCCCCCHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCc--chHHHHhHhcCCCeEEEc
Q 044218 79 EHGRANDFAGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYL--PWVVDVGNRRNIPVASLW 147 (436)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~--~~~~~~A~~~gIP~v~~~ 147 (436)
.+.+...-.. ..++++-+... .+|+||++..- -.=..+++..++=.++..
T Consensus 122 ----rG~lGGlS~a--------t~~~i~~ldAa-------G~DvIIVETVGvGQsev~I~~~aDt~~~v~~ 173 (323)
T COG1703 122 ----RGTLGGLSRA--------TREAIKLLDAA-------GYDVIIVETVGVGQSEVDIANMADTFLVVMI 173 (323)
T ss_pred ----CccchhhhHH--------HHHHHHHHHhc-------CCCEEEEEecCCCcchhHHhhhcceEEEEec
Confidence 1112222222 22333334322 89999998654 334556777776555543
No 176
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=74.76 E-value=66 Score=29.15 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=24.2
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccccc
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLG 56 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~ 56 (436)
|||++.-==+. |.--+.+|+++|++ +|+|+++.|.....
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~---~~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK---YHEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh---CCcEEEEccCCCCc
Confidence 35555433222 22226788888865 68999998876554
No 177
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=74.40 E-value=12 Score=37.34 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=35.4
Q ss_pred CCcEEEEEcCCCccChHHH------------HHHHHHHHhCCCCcEEEEEeccc
Q 044218 12 SLCHVLALPYPGRGHVNPM------------MNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~------------l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
+.+||++...|++=.+.|. .+||+++.. +|++||+++.+.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~--~GA~VtlI~Gp~ 306 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAA--AGAEVTLISGPV 306 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHH--CCCcEEEEeCCc
Confidence 5689999999999888886 499999999 999999999774
No 178
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=74.37 E-value=3.1 Score=31.30 Aligned_cols=85 Identities=18% Similarity=0.233 Sum_probs=47.7
Q ss_pred HHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHHhh
Q 044218 30 MMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPSEHGRANDFAGFLEAVFTKMEAPFEELLDRLL 109 (436)
Q Consensus 30 ~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 109 (436)
++++|+.|.+ .||++ +.++--.+.+++. |+....+-..........++. ++++.++
T Consensus 2 ~~~~a~~l~~--lG~~i--~AT~gTa~~L~~~----Gi~~~~v~~~~~~~~~~~g~~----------------~i~~~i~ 57 (95)
T PF02142_consen 2 IVPLAKRLAE--LGFEI--YATEGTAKFLKEH----GIEVTEVVNKIGEGESPDGRV----------------QIMDLIK 57 (95)
T ss_dssp HHHHHHHHHH--TTSEE--EEEHHHHHHHHHT----T--EEECCEEHSTG-GGTHCH----------------HHHHHHH
T ss_pred HHHHHHHHHH--CCCEE--EEChHHHHHHHHc----CCCceeeeeecccCccCCchh----------------HHHHHHH
Confidence 5789999999 99665 5566666777777 787555532111000000111 3444444
Q ss_pred cCCCCCCCCCeeEEEEcCCcch---------HHHHhHhcCCCeEE
Q 044218 110 LDDDEQPAAAVTAIIADTYLPW---------VVDVGNRRNIPVAS 145 (436)
Q Consensus 110 ~~~~~~~~~~~D~vI~D~~~~~---------~~~~A~~~gIP~v~ 145 (436)
+. ++|+||....... -..+|..++||+++
T Consensus 58 ~~-------~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 58 NG-------KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLFT 95 (95)
T ss_dssp TT-------SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEEC
T ss_pred cC-------CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCcC
Confidence 44 8999997754311 14467788888763
No 179
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=74.16 E-value=33 Score=30.87 Aligned_cols=37 Identities=11% Similarity=0.029 Sum_probs=31.0
Q ss_pred CcEEEEEcC-CCccChHHHHHHHHHHHhCCCCcEEEEEec
Q 044218 13 LCHVLALPY-PGRGHVNPMMNICKLLVSRQPDILITFVVT 51 (436)
Q Consensus 13 ~~~vl~~~~-~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~ 51 (436)
|+.|++... |+-|=..=..+||..|++ .|++|..+=-
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~--~G~~VlaID~ 38 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALAR--LGESVLAIDL 38 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHH--CCCcEEEEeC
Confidence 456666655 788999999999999999 9999999853
No 180
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=73.72 E-value=23 Score=30.82 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=33.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccc-c---cccCCCCCCCCeeEEecC
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEW-L---GFIGSQSKPHNIRFRTLP 73 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~-~---~~~~~~~~~~~i~~~~l~ 73 (436)
||||++++.+..+-+. +|.+++.+...+++|.++.+... . +..++. |+.+..++
T Consensus 1 m~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~----gIp~~~~~ 58 (200)
T PRK05647 1 MKRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISDRPDAYGLERAEAA----GIPTFVLD 58 (200)
T ss_pred CceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEecCccchHHHHHHHc----CCCEEEEC
Confidence 5899999998754444 56667777222478887655532 2 223444 77776664
No 181
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=73.61 E-value=46 Score=30.34 Aligned_cols=99 Identities=10% Similarity=0.033 Sum_probs=51.4
Q ss_pred HHHHHHHHHhC-CCCcEEEEEeccccccccCCCCC-CCCeeEEecCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHH
Q 044218 30 MMNICKLLVSR-QPDILITFVVTEEWLGFIGSQSK-PHNIRFRTLPNTIPSEHGRANDFAGFLEAVFTKMEAPFEELLDR 107 (436)
Q Consensus 30 ~l~la~~L~~~-~~Gh~Vt~~~~~~~~~~~~~~~~-~~~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 107 (436)
+.+|+++|.+. ++|++|+++.|.....-.-...+ ...++...+.++. +.-.+.+........ ..+++.
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~~~~---yav~GTPaDCV~lal-------~~~~~~ 85 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELGPRR---FAAEGSPADCVLAAL-------YDVMKD 85 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeCCCe---EEEcCchHHHHHHHH-------HHhcCC
Confidence 45667777661 13579999888765543322211 2245665554221 111233333333322 122211
Q ss_pred hhcCCCCCCCCCeeEEEEcC----------Cc---chHHHHhHhcCCCeEEEcc
Q 044218 108 LLLDDDEQPAAAVTAIIADT----------YL---PWVVDVGNRRNIPVASLWT 148 (436)
Q Consensus 108 ~~~~~~~~~~~~~D~vI~D~----------~~---~~~~~~A~~~gIP~v~~~~ 148 (436)
. +||+||+-. ++ ..|..-|..+|||.+.++.
T Consensus 86 ---~-------~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 86 ---A-------PPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred ---C-------CCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 2 799998632 22 3344445688999999864
No 182
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=73.59 E-value=6.6 Score=31.86 Aligned_cols=42 Identities=7% Similarity=-0.161 Sum_probs=37.6
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccc
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWL 55 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~ 55 (436)
++++|++.+.++-+|-.-..-++..|+. .|++|++++.....
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~--~G~eVi~LG~~vp~ 43 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTE--AGFEVINLGVMTSQ 43 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHH--CCCEEEECCCCCCH
Confidence 5689999999999999999999999999 99999999865443
No 183
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=72.78 E-value=5.4 Score=31.30 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=32.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 15 ~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
||++.+.++-.|.....-++..|++ .||+|.+....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~--~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRD--AGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHH--CCCEEEECCCC
Confidence 5899999999999999999999999 99999887654
No 184
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=72.75 E-value=21 Score=26.29 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=46.8
Q ss_pred HHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHHhh
Q 044218 30 MMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPSEHGRANDFAGFLEAVFTKMEAPFEELLDRLL 109 (436)
Q Consensus 30 ~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 109 (436)
++.+++.|.+ .|+++. .++...+.+++. |+.+..+-..... +. ..+++.++
T Consensus 2 ~~~~~~~l~~--lG~~i~--AT~gTa~~L~~~----Gi~~~~~~~ki~~-----~~----------------~~i~~~i~ 52 (90)
T smart00851 2 LVELAKRLAE--LGFELV--ATGGTAKFLREA----GLPVKTLHPKVHG-----GI----------------LAILDLIK 52 (90)
T ss_pred HHHHHHHHHH--CCCEEE--EccHHHHHHHHC----CCcceeccCCCCC-----CC----------------HHHHHHhc
Confidence 4689999999 999983 344445666666 6665322111100 00 12445555
Q ss_pred cCCCCCCCCCeeEEEEcCC---------cchHHHHhHhcCCCeE
Q 044218 110 LDDDEQPAAAVTAIIADTY---------LPWVVDVGNRRNIPVA 144 (436)
Q Consensus 110 ~~~~~~~~~~~D~vI~D~~---------~~~~~~~A~~~gIP~v 144 (436)
+. ++|+||.... ...-...|-..+||++
T Consensus 53 ~g-------~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 53 NG-------EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred CC-------CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 44 8999997532 1234456888899876
No 185
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=72.40 E-value=4.7 Score=34.55 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=37.4
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccC
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIG 59 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~ 59 (436)
|+||++...|+.|=+. ...+.+.|++ +|++|.++.++...+.+.
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L~~--~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQLTK--RGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHHH--CCCEEEEEEChhHHHHcC
Confidence 5788888888877665 8999999999 999999999988776665
No 186
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=72.02 E-value=42 Score=30.24 Aligned_cols=98 Identities=8% Similarity=-0.007 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeccccccccCCCCC-CCCeeEEecCC--CCCCCCCCCCCHHHHHHHHHHhchHHHHHHH
Q 044218 29 PMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSK-PHNIRFRTLPN--TIPSEHGRANDFAGFLEAVFTKMEAPFEELL 105 (436)
Q Consensus 29 p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~-~~~i~~~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 105 (436)
-..+|+++|++ .| +|+++.|.....-+-.... ...+++..++. +. ..+...+.+.......+
T Consensus 15 Gi~aL~~~l~~--~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~-~~~~v~GTPaDcv~~gl----------- 79 (244)
T TIGR00087 15 GIRALYQALKE--LG-EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGA-HIYAVDGTPTDCVILGI----------- 79 (244)
T ss_pred hHHHHHHHHHh--CC-CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCc-cEEEEcCcHHHHHHHHH-----------
Confidence 35678999988 88 8999988765543332211 22455555541 11 01111223333332222
Q ss_pred HHhhcCCCCCCCCCeeEEEEcCC-------------cchHHHHhHhcCCCeEEEcc
Q 044218 106 DRLLLDDDEQPAAAVTAIIADTY-------------LPWVVDVGNRRNIPVASLWT 148 (436)
Q Consensus 106 ~~~~~~~~~~~~~~~D~vI~D~~-------------~~~~~~~A~~~gIP~v~~~~ 148 (436)
..+... +||+||+-.- +..|..-|..+|||.+.++.
T Consensus 80 ~~l~~~-------~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 80 NELMPE-------VPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred HHhccC-------CCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 222222 7899885421 13345555788999999864
No 187
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=71.37 E-value=11 Score=34.40 Aligned_cols=77 Identities=13% Similarity=0.134 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhC-CCeEEEEEcCCC-----Ccccccc--cCCCcEEeeccchhhhccccCcceeeccCCcchHHHHHhcC
Q 044218 267 QMDEIIAGIRNS-GVRYLWVTRGDT-----SRFKDGH--ADDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAG 338 (436)
Q Consensus 267 ~~~~l~~al~~~-~~~~i~~~~~~~-----~~~~~~~--~~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~G 338 (436)
+...+.+.++.. +..++++..... ..+.+.. ....+.+.+-.+-.+|+.+++. +||-.+. +-.||+.+|
T Consensus 142 ~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~g 218 (269)
T PF05159_consen 142 FLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIIDDDVNLYELLEQSDA--VVTINST-VGLEALLHG 218 (269)
T ss_pred HHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcC
Confidence 344444444444 577777765421 1111110 1223334466677789999999 8888764 778999999
Q ss_pred CcEeeccc
Q 044218 339 VPMLTFPL 346 (436)
Q Consensus 339 vP~l~~P~ 346 (436)
+|++++..
T Consensus 219 kpVi~~G~ 226 (269)
T PF05159_consen 219 KPVIVFGR 226 (269)
T ss_pred CceEEecC
Confidence 99999875
No 188
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=71.20 E-value=12 Score=26.96 Aligned_cols=35 Identities=9% Similarity=0.009 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEE
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFV 49 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~ 49 (436)
.+-++++.-+...|...+-.+|+.|.+ +|+.|..+
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~--~G~~V~~~ 49 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAE--QGYAVFAY 49 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHh--CCCEEEEE
Confidence 577899999999999999999999999 99999864
No 189
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=69.47 E-value=7 Score=33.82 Aligned_cols=45 Identities=11% Similarity=-0.153 Sum_probs=35.6
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccccccc
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFI 58 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~ 58 (436)
+.+||++--.|+.|=+.-...++++|++ +||+|.++.++...+.+
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k--~G~~V~vv~T~aA~~~~ 48 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVD--EGAEVTPIVSYTVQTTD 48 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHh--CcCEEEEEECHhHHHHh
Confidence 4578888877766655547999999999 99999999988766543
No 190
>PRK05920 aromatic acid decarboxylase; Validated
Probab=69.29 E-value=5.7 Score=34.65 Aligned_cols=45 Identities=9% Similarity=0.122 Sum_probs=37.7
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccC
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIG 59 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~ 59 (436)
+++||++--.|+.+= +-.+.+.+.|++ .||+|.++.++....++.
T Consensus 2 ~~krIllgITGsiaa-~ka~~lvr~L~~--~g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 2 KMKRIVLAITGASGA-IYGVRLLECLLA--ADYEVHLVISKAAQKVLA 46 (204)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHH--CCCEEEEEEChhHHHHHH
Confidence 458888887776665 689999999999 999999999998777664
No 191
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=69.23 E-value=2.8 Score=36.02 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCccChHH------------HHHHHHHHHhCCCCcEEEEEeccc
Q 044218 13 LCHVLALPYPGRGHVNP------------MMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p------------~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
.++|++...|+.=.+.| -.+||+++.. +||+||++..+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~--~Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAAR--RGAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHH--TT-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHH--CCCEEEEEecCc
Confidence 45677777776666655 3589999999 999999999884
No 192
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=68.90 E-value=35 Score=30.88 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccccc
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLG 56 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~ 56 (436)
+++|+++..-+-| ..||+.|.+ +|+.|++.+...+..
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~--~g~~v~~Svat~~g~ 38 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAA--AGVDIVLSLAGRTGG 38 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHh--CCCeEEEEEccCCCC
Confidence 5778887766655 478999999 999888866655444
No 193
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=68.88 E-value=85 Score=29.33 Aligned_cols=80 Identities=13% Similarity=0.069 Sum_probs=57.1
Q ss_pred CCcEEe-eccc---hhhhccccCcceeecc--CCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCcc
Q 044218 300 DRGIVV-PWCD---QLRVLCHASIGGFWTH--CGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIA 373 (436)
Q Consensus 300 ~~~~v~-~~~p---q~~ll~~~~~~~~I~h--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~ 373 (436)
+++.+. .++| +..+|..|+++.|+|+ =|.|+++-.+++|+|.++-- +=+.|....+ . |+-+-.+.
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqdl~e-~-gv~Vlf~~---- 276 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQDLTE-Q-GLPVLFTG---- 276 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHHHHh-C-CCeEEecC----
Confidence 677765 7776 6679999999888876 48999999999999998753 3344444333 5 66665454
Q ss_pred ccCccCHHHHHHHHHHH
Q 044218 374 SERLVTRDEITELVKRF 390 (436)
Q Consensus 374 ~~~~~t~~~l~~~i~~l 390 (436)
..++...+.++=+++
T Consensus 277 --d~L~~~~v~e~~rql 291 (322)
T PRK02797 277 --DDLDEDIVREAQRQL 291 (322)
T ss_pred --CcccHHHHHHHHHHH
Confidence 337888887765543
No 194
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=68.33 E-value=19 Score=35.60 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
++|||+++..+++-| +|++.|++ -++...+++.+
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~--~~~~~~~~~~p 36 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRK--SNLLSELKVFP 36 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHh--CCCCCEEEEEC
Confidence 569999999999887 68999998 77544444444
No 195
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=68.33 E-value=5.5 Score=34.18 Aligned_cols=45 Identities=9% Similarity=0.064 Sum_probs=38.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCC-CcEEEEEeccccccccCC
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQP-DILITFVVTEEWLGFIGS 60 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~-Gh~Vt~~~~~~~~~~~~~ 60 (436)
|+||++.-.|+.| .+-...++++|++ . ||+|.++.++....++..
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k--~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRD--VGEIETHLVISQAARQTLAH 46 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHh--hcCCeEEEEECHHHHHHHHH
Confidence 5788888888888 7779999999988 6 999999999988776654
No 196
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=67.45 E-value=37 Score=30.34 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=26.0
Q ss_pred CeeEEE-EcCCc-chHHHHhHhcCCCeEEEcchhH
Q 044218 119 AVTAII-ADTYL-PWVVDVGNRRNIPVASLWTMSA 151 (436)
Q Consensus 119 ~~D~vI-~D~~~-~~~~~~A~~~gIP~v~~~~~~~ 151 (436)
-||+++ .|+.. --|..=|.++|||+|.+..+.+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 499975 77755 7788889999999999866543
No 197
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=66.71 E-value=44 Score=27.96 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCCeEEEEEcCCC-Cccccccc-C-CCcEEeeccch----------hhhccccCcceeeccCCcc------
Q 044218 269 DEIIAGIRNSGVRYLWVTRGDT-SRFKDGHA-D-DRGIVVPWCDQ----------LRVLCHASIGGFWTHCGLN------ 329 (436)
Q Consensus 269 ~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~-~-~~~~v~~~~pq----------~~ll~~~~~~~~I~hgG~~------ 329 (436)
..+++.|++.|++.++...+.. ..+-+. + . .+++++..... ...-..+ +++++|+|-|
T Consensus 4 ~~l~~~L~~~Gv~~vFgipG~~~~~l~~a-l~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~--~v~~~t~GpG~~n~~~ 80 (164)
T cd07039 4 DVIVETLENWGVKRVYGIPGDSINGLMDA-LRREGKIEFIQVRHEEAAAFAASAEAKLTGKL--GVCLGSSGPGAIHLLN 80 (164)
T ss_pred HHHHHHHHHCCCCEEEEcCCCchHHHHHH-HhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCC--EEEEECCCCcHHHHHH
Confidence 3567777888887777766653 111111 1 1 23444432221 1111234 4489998855
Q ss_pred hHHHHHhcCCcEeecc
Q 044218 330 STIESLYAGVPMLTFP 345 (436)
Q Consensus 330 s~~eal~~GvP~l~~P 345 (436)
.+.+|...++|+|++.
T Consensus 81 ~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 81 GLYDAKRDRAPVLAIA 96 (164)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 6678999999999996
No 198
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=65.99 E-value=33 Score=33.70 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=22.1
Q ss_pred CeeEEEEcCCcchHHHHhHhcCCCeEEEc
Q 044218 119 AVTAIIADTYLPWVVDVGNRRNIPVASLW 147 (436)
Q Consensus 119 ~~D~vI~D~~~~~~~~~A~~~gIP~v~~~ 147 (436)
+||++|.. +.+..+|+++|||.+.+.
T Consensus 350 ~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 350 RPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred CCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 89999987 446779999999998853
No 199
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=65.98 E-value=7.3 Score=33.15 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=25.5
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccc
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWL 55 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~ 55 (436)
|+|++++. .|++- -.|.++..+ |||+||-++.....
T Consensus 1 mKIaiIgA--sG~~G--s~i~~EA~~--RGHeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIGA--SGKAG--SRILKEALK--RGHEVTAIVRNASK 36 (211)
T ss_pred CeEEEEec--CchhH--HHHHHHHHh--CCCeeEEEEeChHh
Confidence 56666643 33333 257899999 99999999977554
No 200
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=65.72 E-value=20 Score=31.50 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCcc--ChHHHHHHHHHHHh
Q 044218 13 LCHVLALPYPGRG--HVNPMMNICKLLVS 39 (436)
Q Consensus 13 ~~~vl~~~~~~~G--H~~p~l~la~~L~~ 39 (436)
||+|++..++-+| ..||.-.++++|..
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~ 29 (211)
T PRK13196 1 MPTLLLTGFEPFHTHPVNPSAQAAQALNG 29 (211)
T ss_pred CCEEEEEeecCCCCCCCCcHHHHHHhccc
Confidence 6889888886444 49999999999966
No 201
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=65.66 E-value=18 Score=32.04 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCcc--ChHHHHHHHHHHHh
Q 044218 13 LCHVLALPYPGRG--HVNPMMNICKLLVS 39 (436)
Q Consensus 13 ~~~vl~~~~~~~G--H~~p~l~la~~L~~ 39 (436)
||+|++..++-.| -+||...++++|..
T Consensus 1 m~~ILvTGF~PFgg~~~NPS~~~v~~L~~ 29 (222)
T PRK13195 1 MSKVLVTGFGPYGVTPVNPAQLTAEELDG 29 (222)
T ss_pred CCEEEEeeecCCCCCCcCchHHHHHhccc
Confidence 5789888886444 48999999999965
No 202
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=65.02 E-value=13 Score=33.16 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=26.2
Q ss_pred cEEEEEcCCCccChHHH------------HHHHHHHHhCCCCcEEEEEecc
Q 044218 14 CHVLALPYPGRGHVNPM------------MNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~------------l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
|||++...|+.=.+.|. .+||++|.+ +||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~--~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLA--AGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHh--CCCEEEEEECc
Confidence 45666555555554442 478899999 99999998754
No 203
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=64.84 E-value=74 Score=28.46 Aligned_cols=46 Identities=13% Similarity=0.017 Sum_probs=38.1
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCC-cEEEEEeccccccccCCC
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPD-ILITFVVTEEWLGFIGSQ 61 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~G-h~Vt~~~~~~~~~~~~~~ 61 (436)
|+|++..-|+.|-..-..-|+.+|.+ +| ++|..+-.+++...-...
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~--~~~~~VLvVDaDpd~nL~~~L 47 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLS--KGGYNVLVVDADPDSNLPEAL 47 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHh--cCCceEEEEeCCCCCChHHhc
Confidence 67899999999999888887888888 76 999999888776655555
No 204
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=64.74 E-value=50 Score=29.81 Aligned_cols=97 Identities=12% Similarity=0.063 Sum_probs=50.2
Q ss_pred HHHHHHHHHhCCCCcEEEEEeccccccccCCCCC-CCCeeEEecCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHHHHh
Q 044218 30 MMNICKLLVSRQPDILITFVVTEEWLGFIGSQSK-PHNIRFRTLPNTIPSEHGRANDFAGFLEAVFTKMEAPFEELLDRL 108 (436)
Q Consensus 30 ~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~-~~~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 108 (436)
.-+|++.|+ .+++|+++.|.....-+..... ...++...+... .+...+.+.+.... .+..++++.
T Consensus 16 i~aL~~al~---~~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~~---~~av~GTPaDCV~l-------al~~l~~~~ 82 (252)
T COG0496 16 IRALARALR---EGADVTVVAPDREQSGASHSLTLHEPLRVRQVDNG---AYAVNGTPADCVIL-------GLNELLKEP 82 (252)
T ss_pred HHHHHHHHh---hCCCEEEEccCCCCcccccccccccCceeeEeccc---eEEecCChHHHHHH-------HHHHhccCC
Confidence 445677775 5999999999876654432211 223333333220 01111222222222 123333332
Q ss_pred hcCCCCCCCCCeeEEEEcC----------Cc---chHHHHhHhcCCCeEEEcch
Q 044218 109 LLDDDEQPAAAVTAIIADT----------YL---PWVVDVGNRRNIPVASLWTM 149 (436)
Q Consensus 109 ~~~~~~~~~~~~D~vI~D~----------~~---~~~~~~A~~~gIP~v~~~~~ 149 (436)
.||+||+-. .+ ..|..=|..+|||.+.++..
T Consensus 83 ----------~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 83 ----------RPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred ----------CCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 699998642 22 33444457899999998654
No 205
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=63.74 E-value=39 Score=32.11 Aligned_cols=92 Identities=17% Similarity=0.176 Sum_probs=66.8
Q ss_pred CCcEEeeccchhh-hccccCcceeeccCCcc----hHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccc
Q 044218 300 DRGIVVPWCDQLR-VLCHASIGGFWTHCGLN----STIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIAS 374 (436)
Q Consensus 300 ~~~~v~~~~pq~~-ll~~~~~~~~I~hgG~~----s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~ 374 (436)
+...+.+..+-.. +-.|.++ +|+|=--| -.+|+|+.|-|.| .|+..+. ++|..-+.
T Consensus 253 gkasfegR~~~p~fla~~tD~--VvSHqWeN~lNYlY~daLyggYPLV---------HNS~~l~---d~GYYY~~----- 313 (364)
T PF10933_consen 253 GKASFEGRFDFPDFLAQHTDA--VVSHQWENPLNYLYYDALYGGYPLV---------HNSPLLK---DVGYYYPD----- 313 (364)
T ss_pred CeeEEeeecChHHHHHhCCCE--EEeccccchhhHHHHHHHhcCCCcc---------cCcchhc---ccCcCCCC-----
Confidence 4566666666555 4467777 99997655 4569999999997 5888887 58877776
Q ss_pred cCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHH
Q 044218 375 ERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICR 413 (436)
Q Consensus 375 ~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~ 413 (436)
++..+=.+++.+.+.+-|...+.|+++|+++=.++.
T Consensus 314 ---fD~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~~ 349 (364)
T PF10933_consen 314 ---FDAFEGARQLLRAIREHDADLDAYRARARRLLDRLS 349 (364)
T ss_pred ---ccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhhC
Confidence 566666666666665555556889999988776655
No 206
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=63.29 E-value=1.1e+02 Score=28.97 Aligned_cols=82 Identities=11% Similarity=0.109 Sum_probs=59.7
Q ss_pred CCcEEe-eccc---hhhhccccCcceeecc--CCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCcc
Q 044218 300 DRGIVV-PWCD---QLRVLCHASIGGFWTH--CGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIA 373 (436)
Q Consensus 300 ~~~~v~-~~~p---q~~ll~~~~~~~~I~h--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~ 373 (436)
+++.+. +++| +..+|..|+++.|.|. =|.|+++-.|++|+|.++-- +=+.|-. +++. |+=+-... +
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~---~np~~~~-l~~~-~ipVlf~~-d-- 316 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR---DNPFWQD-LKEQ-GIPVLFYG-D-- 316 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec---CChHHHH-HHhC-CCeEEecc-c--
Confidence 577654 7887 5669999999777764 58999999999999998643 3344433 4435 66655544 3
Q ss_pred ccCccCHHHHHHHHHHHhc
Q 044218 374 SERLVTRDEITELVKRFMD 392 (436)
Q Consensus 374 ~~~~~t~~~l~~~i~~ll~ 392 (436)
.++...|+++=+++..
T Consensus 317 ---~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 ---ELDEALVREAQRQLAN 332 (360)
T ss_pred ---cCCHHHHHHHHHHHhh
Confidence 3899999998887764
No 207
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=63.16 E-value=20 Score=27.08 Aligned_cols=46 Identities=4% Similarity=-0.039 Sum_probs=33.1
Q ss_pred CCCCccc---C--hHHHHHHHHHHHhCCCeEEEEEcCCCCcccccccCCCcE
Q 044218 257 WEAFYSV---S--SAQMDEIIAGIRNSGVRYLWVTRGDTSRFKDGHADDRGI 303 (436)
Q Consensus 257 wGS~~~~---~--~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 303 (436)
|||.... . ...+..+++++++++..+|+.+.......... +|+|++
T Consensus 47 ~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~lg~-lP~nVR 97 (97)
T PF06722_consen 47 LGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAELGE-LPDNVR 97 (97)
T ss_dssp ETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGGCCS--TTTEE
T ss_pred cCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHhhCC-CCCCCC
Confidence 6776542 2 24788999999999999999998765332233 588875
No 208
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=63.08 E-value=18 Score=32.43 Aligned_cols=78 Identities=10% Similarity=0.158 Sum_probs=46.4
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEEcCCC--Ccc----cccccCCC-cEEeec--cch-hhhccccCcceeeccCCcchHH
Q 044218 263 VSSAQMDEIIAGIRNSGVRYLWVTRGDT--SRF----KDGHADDR-GIVVPW--CDQ-LRVLCHASIGGFWTHCGLNSTI 332 (436)
Q Consensus 263 ~~~~~~~~l~~al~~~~~~~i~~~~~~~--~~~----~~~~~~~~-~~v~~~--~pq-~~ll~~~~~~~~I~hgG~~s~~ 332 (436)
.+.+.+.++++.+.+.++++++..+... ... .+. .+++ +.+.+- +.+ ..++.++++ +|+.-. |.++
T Consensus 121 wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~e~~ali~~a~~--~I~~Dt-g~~H 196 (247)
T PF01075_consen 121 WPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAG-LQNPVINLAGKTSLRELAALISRADL--VIGNDT-GPMH 196 (247)
T ss_dssp --HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTT-HTTTTEEETTTS-HHHHHHHHHTSSE--EEEESS-HHHH
T ss_pred CCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHh-cccceEeecCCCCHHHHHHHHhcCCE--EEecCC-hHHH
Confidence 6888899999999988877655444432 111 111 1222 333332 233 348888888 887654 7899
Q ss_pred HHHhcCCcEeec
Q 044218 333 ESLYAGVPMLTF 344 (436)
Q Consensus 333 eal~~GvP~l~~ 344 (436)
=|.+.|+|+|++
T Consensus 197 lA~a~~~p~v~l 208 (247)
T PF01075_consen 197 LAAALGTPTVAL 208 (247)
T ss_dssp HHHHTT--EEEE
T ss_pred HHHHHhCCEEEE
Confidence 999999999998
No 209
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.89 E-value=35 Score=32.76 Aligned_cols=43 Identities=7% Similarity=0.184 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccccc
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLG 56 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~ 56 (436)
++.-|.|+..-+.|-..-|-.+|..+++ +|+.+.++|.+-|..
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kk--kG~K~~LvcaDTFRa 142 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKK--KGYKVALVCADTFRA 142 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHh--cCCceeEEeeccccc
Confidence 3445677777799999999999999999 999999999887764
No 210
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=62.42 E-value=51 Score=27.55 Aligned_cols=27 Identities=26% Similarity=0.520 Sum_probs=21.6
Q ss_pred ceeeccCCcc------hHHHHHhcCCcEeeccc
Q 044218 320 GGFWTHCGLN------STIESLYAGVPMLTFPL 346 (436)
Q Consensus 320 ~~~I~hgG~~------s~~eal~~GvP~l~~P~ 346 (436)
+++++|+|-| .+.+|...++|+|++.-
T Consensus 62 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 62 VAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred EEEEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 3388898855 56699999999999953
No 211
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=62.11 E-value=38 Score=33.41 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=26.5
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
.||.+...+.. .+.+++.|.+ -|-+|..+++.
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~e--lGmevv~~~t~ 317 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLE--SGADVPYVGTA 317 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHH--CCCEEEEEecC
Confidence 47777777766 8889999999 99999998766
No 212
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=61.37 E-value=39 Score=32.97 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=36.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccccc
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLG 56 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~ 56 (436)
+..|+++..=+.|-..-+-.||+.|++ +|+.|.+++.+-+..
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk--~~~kvllVaaD~~Rp 141 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKK--KGKKVLLVAADTYRP 141 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHH--cCCceEEEecccCCh
Confidence 445666666799999999999999999 999999999887764
No 213
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=60.61 E-value=15 Score=34.47 Aligned_cols=49 Identities=6% Similarity=0.116 Sum_probs=36.2
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEe
Q 044218 11 TSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRT 71 (436)
Q Consensus 11 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~ 71 (436)
+++|+|+++..|+.|= .+|..|.+ .||+|+++.... .+.+... ++.+..
T Consensus 3 ~~~m~I~IiG~GaiG~-----~lA~~L~~--~g~~V~~~~r~~-~~~~~~~----g~~~~~ 51 (313)
T PRK06249 3 SETPRIGIIGTGAIGG-----FYGAMLAR--AGFDVHFLLRSD-YEAVREN----GLQVDS 51 (313)
T ss_pred CcCcEEEEECCCHHHH-----HHHHHHHH--CCCeEEEEEeCC-HHHHHhC----CeEEEe
Confidence 3457999999998884 56788999 999999998865 3445555 555543
No 214
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=60.56 E-value=21 Score=32.26 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=25.7
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccC
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIG 59 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~ 59 (436)
|||+++..-+-| ..||+.|.+ +|+ |++-+..++.....
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~--~g~-v~~sv~t~~g~~~~ 38 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAE--AGY-VIVSVATSYGGELL 38 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHh--cCC-EEEEEEhhhhHhhh
Confidence 577777665555 479999999 998 76655554444333
No 215
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=60.12 E-value=48 Score=32.06 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=28.6
Q ss_pred CCcEEEEEc-CCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 12 SLCHVLALP-YPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 12 ~~~~vl~~~-~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
.+++|+++. .|..|. .+|+.|++ +||+|+++...
T Consensus 97 ~~~~I~IiGG~GlmG~-----slA~~l~~--~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGR-----LFAKMLTL--SGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhH-----HHHHHHHH--CCCeEEEeCCC
Confidence 568999997 788775 58999999 99999998754
No 216
>PRK10867 signal recognition particle protein; Provisional
Probab=59.97 E-value=50 Score=32.65 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=35.5
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCC-CcEEEEEecccccc
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQP-DILITFVVTEEWLG 56 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~-Gh~Vt~~~~~~~~~ 56 (436)
+.-|+|+..++-|=..-...||..|++ + |+.|.++..+.+..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~--~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKK--KKKKKVLLVAADVYRP 142 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH--hcCCcEEEEEccccch
Confidence 345667777799999999999999999 8 99999999886664
No 217
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=59.60 E-value=1.6e+02 Score=28.09 Aligned_cols=126 Identities=13% Similarity=0.052 Sum_probs=77.4
Q ss_pred CCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccc---cccccCCCCCCCCeeEEecCCCCCCCCCCCCCH
Q 044218 10 PTSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEE---WLGFIGSQSKPHNIRFRTLPNTIPSEHGRANDF 86 (436)
Q Consensus 10 ~~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~---~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~ 86 (436)
..++.|+.++-.|-.||-=+|--=|..|++ .|++|.+++--. ..+.++.. +|+++.++.- +.......-+
T Consensus 9 ~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~--~gf~VdliGy~~s~p~e~l~~hp----rI~ih~m~~l-~~~~~~p~~~ 81 (444)
T KOG2941|consen 9 KSKKKRAIVVVLGDVGRSPRMQYHALSLAK--LGFQVDLIGYVESIPLEELLNHP----RIRIHGMPNL-PFLQGGPRVL 81 (444)
T ss_pred ccccceEEEEEecccCCChHHHHHHHHHHH--cCCeEEEEEecCCCChHHHhcCC----ceEEEeCCCC-cccCCCchhh
Confidence 456789999999999999999999999999 999999987543 33344444 8999999731 1111111112
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEc-CCcchHHHHhH----hcCCCeEEEcchhHHH
Q 044218 87 AGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIAD-TYLPWVVDVGN----RRNIPVASLWTMSALV 153 (436)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D-~~~~~~~~~A~----~~gIP~v~~~~~~~~~ 153 (436)
...++.+++. ...+-.+.. + . ++|.++.. +-+.+...++. ..|..+++=|-...+.
T Consensus 82 ~l~lKvf~Qf-l~Ll~aL~~-~-------~--~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 82 FLPLKVFWQF-LSLLWALFV-L-------R--PPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred hhHHHHHHHH-HHHHHHHHh-c-------c--CCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 2223333221 111222222 2 2 78988765 44455555554 4477888866655553
No 218
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=58.79 E-value=1.1e+02 Score=25.59 Aligned_cols=96 Identities=7% Similarity=0.018 Sum_probs=54.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEe---ccc-ccc--ccCCCCCCCCeeEEecCCCCCCCCCCCCCHHH
Q 044218 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVV---TEE-WLG--FIGSQSKPHNIRFRTLPNTIPSEHGRANDFAG 88 (436)
Q Consensus 15 ~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~---~~~-~~~--~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~ 88 (436)
-|.+.+.++.|=....+.+|-+... +|++|.|+- +.. .-+ .+++. +++.+.....+..-.. .+...
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~--~g~~v~~vQFlKg~~~~gE~~~l~~l---~~v~~~~~g~~~~~~~---~~~~~ 75 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALG--HGYRVGVVQFLKGGWKYGELKALERL---PNIEIHRMGRGFFWTT---ENDEE 75 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEEEeCCCCccCHHHHHHhC---CCcEEEECCCCCccCC---CChHH
Confidence 3667788899999988888888888 999999943 321 111 12222 2677777765432111 11111
Q ss_pred HHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCc
Q 044218 89 FLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYL 129 (436)
Q Consensus 89 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~ 129 (436)
.. ......++..-+.+... ++|++|-|-..
T Consensus 76 ~~----~~a~~~~~~a~~~~~~~-------~~dLlVLDEi~ 105 (159)
T cd00561 76 DI----AAAAEGWAFAKEAIASG-------EYDLVILDEIN 105 (159)
T ss_pred HH----HHHHHHHHHHHHHHhcC-------CCCEEEEechH
Confidence 11 22223333333333333 89999999654
No 219
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=58.66 E-value=17 Score=31.07 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=24.6
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcE--EEEEecc
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDIL--ITFVVTE 52 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~--Vt~~~~~ 52 (436)
|||+|+.+++. ..+..+.++|.+ ++++ +..+.+.
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~--~~~~~~iv~Vit~ 36 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKA--RGHNVEIVLVITN 36 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHT--TSSEEEEEEEEES
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHh--CCCCceEEEEecc
Confidence 78999977766 446667789999 8887 5555544
No 220
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.30 E-value=1.5e+02 Score=27.26 Aligned_cols=154 Identities=18% Similarity=0.202 Sum_probs=83.7
Q ss_pred CCcccChHHHHHHHHHHHhCCCeEEEEEcCCC--Cc----c-------cccccCC--CcEEeeccchhh---hccccCcc
Q 044218 259 AFYSVSSAQMDEIIAGIRNSGVRYLWVTRGDT--SR----F-------KDGHADD--RGIVVPWCDQLR---VLCHASIG 320 (436)
Q Consensus 259 S~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~--~~----~-------~~~~~~~--~~~v~~~~pq~~---ll~~~~~~ 320 (436)
|++......+...++-+++.+.+++..+.+.. .. + .+.+..+ ++.+++|+||.+ ||--|++
T Consensus 182 slFaY~npa~~s~ieq~r~a~~p~llL~~e~~~~~~~~~~~~~~~~a~Gdv~~~~~lrvvklPFvpqddyd~LL~lcD~- 260 (370)
T COG4394 182 SLFAYENPALPSWIEQLRKADKPILLLIPEGKTQANFAKYFDNNNNADGDVFQTAKLRVVKLPFVPQDDYDELLWLCDF- 260 (370)
T ss_pred hhhccCCcchHHHHHHHHhcCCCEEEEcccchHHHHHHHHcCCCcccccchhcccceEEEEecCCcHhHHHHHHHhccc-
Confidence 44444555667777788888887777665531 00 1 1110112 344459999754 7877777
Q ss_pred eeeccCCcchHHHHHhcCCcEe--eccccccchhhHHHHhhhh-ceeeEeecCCccccCccCHHHHHHHHHH--------
Q 044218 321 GFWTHCGLNSTIESLYAGVPML--TFPLFWDQVPNSKQIVQDW-KTGWRVKKPEIASERLVTRDEITELVKR-------- 389 (436)
Q Consensus 321 ~~I~hgG~~s~~eal~~GvP~l--~~P~~~DQ~~na~~~~~~l-G~G~~~~~~~~~~~~~~t~~~l~~~i~~-------- 389 (436)
-+-. |--|+..|..+|+|.+ ++|+..+-+. +.++.-| ...-.+++ -|++.+++.-..
T Consensus 261 -n~VR-GEDSFVRAq~agkPflWHIYpQdentHl--~KLeaFldky~~~lp~--------~~a~alrt~~~~~N~~~ls~ 328 (370)
T COG4394 261 -NLVR-GEDSFVRAQLAGKPFLWHIYPQDENTHL--AKLEAFLDKYCPFLPP--------NTAKALRTFWIAWNAGRLSD 328 (370)
T ss_pred -ceee-cchHHHHHHHcCCCcEEEecCCccccHH--HHHHHHHHHhCCCCCH--------HHHHHHHHHHHHhcCCcccc
Confidence 3333 5569999999999986 5564333221 2222111 11111111 123333332221
Q ss_pred ----HhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 044218 390 ----FMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDI 433 (436)
Q Consensus 390 ----ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 433 (436)
+-.+ .++.|+.|++++..+-. +++...++..|+++.
T Consensus 329 ~w~~f~~~----~~~~r~~a~~wa~~l~~----~~dlaekLvaF~ek~ 368 (370)
T COG4394 329 DWSYFFKN----LKEWREHAKKWANHLIK----NPDLAEKLVAFIEKI 368 (370)
T ss_pred cHHHHHHh----hHHHHHHHHHHHHHHcc----CccHHHHHHHHHHHh
Confidence 1111 14677777777777664 577777788887764
No 221
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=58.27 E-value=67 Score=31.67 Aligned_cols=41 Identities=7% Similarity=0.136 Sum_probs=35.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccc
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWL 55 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~ 55 (436)
...|+|+..++-|=..-+..||..|++ +|+.|.+++.+.+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~--~G~kV~lV~~D~~R 140 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQR--KGFKPCLVCADTFR 140 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEEcCcccc
Confidence 345677777899999999999999999 99999999988765
No 222
>PRK07206 hypothetical protein; Provisional
Probab=58.04 E-value=35 Score=33.41 Aligned_cols=34 Identities=9% Similarity=-0.092 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
|++|+++-.... ...+++++++ .|+++..++...
T Consensus 2 ~k~~liv~~~~~-----~~~~~~a~~~--~G~~~v~v~~~~ 35 (416)
T PRK07206 2 MKKVVIVDPFSS-----GKFLAPAFKK--RGIEPIAVTSSC 35 (416)
T ss_pred CCeEEEEcCCch-----HHHHHHHHHH--cCCeEEEEEcCC
Confidence 567888776433 3468999999 999998887653
No 223
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=58.01 E-value=75 Score=29.19 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=35.0
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccc
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEW 54 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~ 54 (436)
.+..|+|+..++-|=..-...||..|.+ .|+.|.++..+.+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~--~g~~V~li~~D~~ 111 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKK--QGKSVLLAAGDTF 111 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeCCCC
Confidence 3456677777799999999999999998 9999999998764
No 224
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=57.41 E-value=99 Score=26.60 Aligned_cols=107 Identities=10% Similarity=0.111 Sum_probs=62.5
Q ss_pred CCCCCCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEec---c-cccc--ccCCCCCCCCeeEEecCCCCCCC
Q 044218 6 AQVKPTSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVT---E-EWLG--FIGSQSKPHNIRFRTLPNTIPSE 79 (436)
Q Consensus 6 ~~~~~~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~---~-~~~~--~~~~~~~~~~i~~~~l~~~l~~~ 79 (436)
.+....++--|.+.+..+.|-....+.+|-+-.- +|.+|.++-. . .+-+ .+.+. +..+.|+.+++++.-+
T Consensus 21 ~~~~~~~~Gli~V~TG~GKGKTTAAlG~alRa~G--hG~rv~vvQFiKg~~~~GE~~~~~~~--~~~v~~~~~~~g~tw~ 96 (198)
T COG2109 21 VATATEEKGLIIVFTGNGKGKTTAALGLALRALG--HGLRVGVVQFIKGGWKYGEEAALEKF--GLGVEFHGMGEGFTWE 96 (198)
T ss_pred hcccccccCeEEEEecCCCChhHHHHHHHHHHhc--CCCEEEEEEEeecCcchhHHHHHHhh--ccceeEEecCCceeCC
Confidence 3444445556778888899988777777666666 8888887642 1 1111 11221 1268888888766322
Q ss_pred CCCCCCHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcc
Q 044218 80 HGRANDFAGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLP 130 (436)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~ 130 (436)
.. +... +. ..+...++...+.+.+. ++|+||.|-++.
T Consensus 97 ~~---~~~~--d~--~aa~~~w~~a~~~l~~~-------~ydlviLDEl~~ 133 (198)
T COG2109 97 TQ---DREA--DI--AAAKAGWEHAKEALADG-------KYDLVILDELNY 133 (198)
T ss_pred Cc---CcHH--HH--HHHHHHHHHHHHHHhCC-------CCCEEEEehhhH
Confidence 11 1111 11 33445555555666554 899999996653
No 225
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=57.38 E-value=61 Score=32.08 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=53.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCCCCCCCCCHHHHHHH
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPSEHGRANDFAGFLEA 92 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~~~~ 92 (436)
.+||++...+ ...+.+++.|.+ -|.+|..+......+..+.. +. ......|..
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~e--lGm~v~~~~~~~~~~~~~~~-----------~~----~~~~~~D~~----- 363 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTS--MGAQIVAAVTTTGSPLLQKL-----------PV----ETVVIGDLE----- 363 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHH--CCCEEEEEEeCCCCHHHHhC-----------Cc----CcEEeCCHH-----
Confidence 4677776533 467888999998 99999887766543322111 10 000011221
Q ss_pred HHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEE
Q 044218 93 VFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASL 146 (436)
Q Consensus 93 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~ 146 (436)
.+.+++++. ++|++|... .+..+|+++|||++.+
T Consensus 364 -------~l~~~i~~~----------~~dliig~s---~~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 364 -------DLEDLACAA----------GADLLITNS---HGRALAQRLALPLVRA 397 (432)
T ss_pred -------HHHHHHhhc----------CCCEEEECc---chHHHHHHcCCCEEEe
Confidence 123344443 899999874 4567999999999874
No 226
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=56.96 E-value=15 Score=31.53 Aligned_cols=41 Identities=15% Similarity=-0.011 Sum_probs=34.7
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccccc
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLG 56 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~ 56 (436)
+||++.-.|+.|=+.-.+.+.++|++ .|++|+++.++....
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~--~g~~V~vI~S~~A~~ 41 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVD--EGAEVTPIVSETVQT 41 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHh--CcCEEEEEEchhHHH
Confidence 47888888888887777899999999 999999998886553
No 227
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=56.14 E-value=24 Score=27.46 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=32.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 15 ~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
|+++.+.+..-|-.-..-|+..|++ .||+|.++...
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~--~G~~v~~~d~~ 37 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRK--AGHEVDILDAN 37 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHH--TTBEEEEEESS
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHH--CCCeEEEECCC
Confidence 7899999999999999999999999 99999988443
No 228
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=55.89 E-value=39 Score=29.27 Aligned_cols=39 Identities=8% Similarity=0.173 Sum_probs=32.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccc
Q 044218 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWL 55 (436)
Q Consensus 15 ~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~ 55 (436)
-|+|+...+-|=..-...||..++. +|..|.+++.+.+.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~--~~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKL--KGKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhh--ccccceeecCCCCC
Confidence 4667777789999999999999999 89999999988765
No 229
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=55.76 E-value=53 Score=29.78 Aligned_cols=38 Identities=13% Similarity=0.018 Sum_probs=32.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccc
Q 044218 16 VLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWL 55 (436)
Q Consensus 16 vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~ 55 (436)
++|..-|+-|-..-..++|..+.+ .|++|.++..+.-.
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~--~g~~vLlvd~D~~~ 40 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAE--QGKKVLLVSTDPAH 40 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHH--CCCCceEEeCCCcc
Confidence 455666899999999999999999 99999999887643
No 230
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=55.54 E-value=92 Score=30.91 Aligned_cols=36 Identities=17% Similarity=0.093 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccc
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWL 55 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~ 55 (436)
+++|+++..|-.| +++++.|++ +|++|++.-.....
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~--~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLK--LGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHH--CCCeEEEEcCCCCc
Confidence 8999999999998 899999999 99999998765444
No 231
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=55.17 E-value=9.9 Score=31.58 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=27.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 15 ~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
+|.++..|..|+ ++|..|.+ +||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~--~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLAD--NGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHH--CTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHH--cCCEEEEEeccH
Confidence 577888888776 78999999 999999999874
No 232
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=55.16 E-value=25 Score=30.54 Aligned_cols=56 Identities=11% Similarity=-0.066 Sum_probs=43.7
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccccc----ccCCCCCCCCeeEEecC
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLG----FIGSQSKPHNIRFRTLP 73 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~----~~~~~~~~~~i~~~~l~ 73 (436)
...+|++.+.++-.|-....-++..|.. .|++|++++..--.+ .+.+. +.++..+.
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~--~G~~vi~LG~~vp~e~~v~~~~~~----~pd~v~lS 142 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRA--NGFDVIDLGRDVPIDTVVEKVKKE----KPLMLTGS 142 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHh--CCcEEEECCCCCCHHHHHHHHHHc----CCCEEEEc
Confidence 4579999999999999999999999999 999999998654433 33444 45555553
No 233
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=54.69 E-value=27 Score=30.48 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=18.2
Q ss_pred cEEEEEcCCCcc--ChHHHHHHHHHHHh
Q 044218 14 CHVLALPYPGRG--HVNPMMNICKLLVS 39 (436)
Q Consensus 14 ~~vl~~~~~~~G--H~~p~l~la~~L~~ 39 (436)
|||++..++-.| -.||.-.++++|..
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~ 28 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPG 28 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTT
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCC
Confidence 678888776444 37999999999965
No 234
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=54.56 E-value=47 Score=32.90 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=21.3
Q ss_pred CeeEEEEcCCcchHHHHhHhcCCCeEEE
Q 044218 119 AVTAIIADTYLPWVVDVGNRRNIPVASL 146 (436)
Q Consensus 119 ~~D~vI~D~~~~~~~~~A~~~gIP~v~~ 146 (436)
+||++|... ....+|+++|||++.+
T Consensus 377 ~pDliiG~s---~~~~~a~~~gip~v~~ 401 (435)
T cd01974 377 PVDLLIGNT---YGKYIARDTDIPLVRF 401 (435)
T ss_pred CCCEEEECc---cHHHHHHHhCCCEEEe
Confidence 899999875 3678999999999875
No 235
>PRK06988 putative formyltransferase; Provisional
Probab=54.25 E-value=61 Score=30.45 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
||||+|+..+.. .+...+.|.+ .||+|..+.+..
T Consensus 2 ~mkIvf~Gs~~~-----a~~~L~~L~~--~~~~i~~Vvt~~ 35 (312)
T PRK06988 2 KPRAVVFAYHNV-----GVRCLQVLLA--RGVDVALVVTHE 35 (312)
T ss_pred CcEEEEEeCcHH-----HHHHHHHHHh--CCCCEEEEEcCC
Confidence 589999977653 3556778888 899998877653
No 236
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=54.06 E-value=34 Score=29.57 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=24.6
Q ss_pred CeeEEE-EcCCc-chHHHHhHhcCCCeEEEcchh
Q 044218 119 AVTAII-ADTYL-PWVVDVGNRRNIPVASLWTMS 150 (436)
Q Consensus 119 ~~D~vI-~D~~~-~~~~~~A~~~gIP~v~~~~~~ 150 (436)
.||+|| .|+.. ..+..=|.++|||++.+..+.
T Consensus 127 ~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 127 LPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 799987 55433 667778899999999986554
No 237
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=53.49 E-value=1.1e+02 Score=28.08 Aligned_cols=104 Identities=12% Similarity=0.115 Sum_probs=57.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCCCCCCCCCHHHHHHH
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPSEHGRANDFAGFLEA 92 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~~~~ 92 (436)
|+-|++...|+.|=....-.|.+.|.+ .|.+|.++..+... +.+. . | .+. ...
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~--~~~~v~~i~~~~~~--~~~~----~--y--------------~~~-~~E-- 53 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEE--KGKEVVIISDDSLG--IDRN----D--Y--------------ADS-KKE-- 53 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHH--TT--EEEE-THHHH---TTS----S--S----------------G-GGH--
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHh--cCCEEEEEcccccc--cchh----h--h--------------hch-hhh--
Confidence 456888899999999999999999999 99999998855443 2222 0 0 000 011
Q ss_pred HHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCc------chHHHHhHhcCCCeEEEcchhHHH
Q 044218 93 VFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYL------PWVVDVGNRRNIPVASLWTMSALV 153 (436)
Q Consensus 93 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~------~~~~~~A~~~gIP~v~~~~~~~~~ 153 (436)
+..+..+...+++... +-++||+|... +--..+|+.++.++.+++......
T Consensus 54 --k~~R~~l~s~v~r~ls--------~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e 110 (270)
T PF08433_consen 54 --KEARGSLKSAVERALS--------KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLE 110 (270)
T ss_dssp --HHHHHHHHHHHHHHHT--------T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HH
T ss_pred --HHHHHHHHHHHHHhhc--------cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHH
Confidence 1122223333333222 44899999754 334568999999999876655443
No 238
>PRK06849 hypothetical protein; Provisional
Probab=53.10 E-value=28 Score=33.86 Aligned_cols=37 Identities=8% Similarity=0.090 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 11 TSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 11 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
.++++|+++..... ..+.+++.|.+ .||+|.++....
T Consensus 2 ~~~~~VLI~G~~~~----~~l~iar~l~~--~G~~Vi~~d~~~ 38 (389)
T PRK06849 2 NTKKTVLITGARAP----AALELARLFHN--AGHTVILADSLK 38 (389)
T ss_pred CCCCEEEEeCCCcH----HHHHHHHHHHH--CCCEEEEEeCCc
Confidence 45788888864433 68999999999 999999987764
No 239
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=52.59 E-value=15 Score=31.11 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=20.4
Q ss_pred hhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhc
Q 044218 351 VPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMD 392 (436)
Q Consensus 351 ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~ 392 (436)
..+...+.+.+|+-+..-. -. +.+++...|.++..
T Consensus 89 ~~~~~~~~~ll~~~i~~~~-~~------~~~e~~~~i~~~~~ 123 (176)
T PF06506_consen 89 IPGLESIEELLGVDIKIYP-YD------SEEEIEAAIKQAKA 123 (176)
T ss_dssp SCCHHHHHHHHT-EEEEEE-ES------SHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhCCceEEEE-EC------CHHHHHHHHHHHHH
Confidence 3346666666666555554 22 67777777777643
No 240
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=52.46 E-value=57 Score=26.70 Aligned_cols=76 Identities=11% Similarity=0.130 Sum_probs=40.2
Q ss_pred HHHHHHHhCCCeEEEEEcCCCC-cccccccC-CCcEEeeccc--------hhhhccccCcceeeccCCcc------hHHH
Q 044218 270 EIIAGIRNSGVRYLWVTRGDTS-RFKDGHAD-DRGIVVPWCD--------QLRVLCHASIGGFWTHCGLN------STIE 333 (436)
Q Consensus 270 ~l~~al~~~~~~~i~~~~~~~~-~~~~~~~~-~~~~v~~~~p--------q~~ll~~~~~~~~I~hgG~~------s~~e 333 (436)
.+++.|++.|++.++.+.+... .+.+. .. ..++++.-.. ...-+..-...+++.|+|-| .+.+
T Consensus 2 ~i~~~L~~~Gv~~vfg~pg~~~~~l~~~-~~~~~~~~i~~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~ 80 (155)
T cd07035 2 ALVEALKAEGVDHVFGVPGGAILPLLDA-LARSGIRYILVRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLAN 80 (155)
T ss_pred HHHHHHHHcCCCEEEECCCCchHHHHHH-hccCCCEEEEeCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHH
Confidence 3566777777777666665421 11111 11 1233332221 11111111233488887744 6678
Q ss_pred HHhcCCcEeeccc
Q 044218 334 SLYAGVPMLTFPL 346 (436)
Q Consensus 334 al~~GvP~l~~P~ 346 (436)
|...++|+|++.-
T Consensus 81 A~~~~~Pll~i~~ 93 (155)
T cd07035 81 AYLDSIPLLVITG 93 (155)
T ss_pred HHhhCCCEEEEeC
Confidence 8889999999964
No 241
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=52.14 E-value=2.6e+02 Score=28.13 Aligned_cols=145 Identities=16% Similarity=0.148 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCC---C---cccccccCCCcEEeeccc-hhh--hccccCcceeec-----cCCcchH
Q 044218 266 AQMDEIIAGIRNSGVRYLWVTRGDT---S---RFKDGHADDRGIVVPWCD-QLR--VLCHASIGGFWT-----HCGLNST 331 (436)
Q Consensus 266 ~~~~~l~~al~~~~~~~i~~~~~~~---~---~~~~~~~~~~~~v~~~~p-q~~--ll~~~~~~~~I~-----hgG~~s~ 331 (436)
+.+...+.-+-+.+.++++.-.++. . .+... .+.++.+.-|.. ... ++.-+++ ++- =||. |=
T Consensus 310 dl~~~~i~~~l~~~~~~vilG~gd~~le~~~~~la~~-~~~~~~~~i~~~~~la~~i~agaD~--~lmPSrfEPcGL-~q 385 (487)
T COG0297 310 DLLLEAIDELLEQGWQLVLLGTGDPELEEALRALASR-HPGRVLVVIGYDEPLAHLIYAGADV--ILMPSRFEPCGL-TQ 385 (487)
T ss_pred hHHHHHHHHHHHhCceEEEEecCcHHHHHHHHHHHHh-cCceEEEEeeecHHHHHHHHhcCCE--EEeCCcCcCCcH-HH
Confidence 4455556656666677766655542 1 11223 466677765544 333 4444444 553 3554 55
Q ss_pred HHHHhcCCcEeeccccc------cchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHHH
Q 044218 332 IESLYAGVPMLTFPLFW------DQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKRA 405 (436)
Q Consensus 332 ~eal~~GvP~l~~P~~~------DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a 405 (436)
++|+++|.+-|+.+..+ |-..+. .... |.|..... .|++++..++++.+. -|+..-
T Consensus 386 l~amryGtvpIv~~tGGLadTV~~~~~~~--~~~~-gtGf~f~~--------~~~~~l~~al~rA~~-------~y~~~~ 447 (487)
T COG0297 386 LYAMRYGTLPIVRETGGLADTVVDRNEWL--IQGV-GTGFLFLQ--------TNPDHLANALRRALV-------LYRAPP 447 (487)
T ss_pred HHHHHcCCcceEcccCCccceecCccchh--ccCc-eeEEEEec--------CCHHHHHHHHHHHHH-------HhhCCH
Confidence 68999999888888632 322232 4445 88888887 599999999998763 455554
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHH
Q 044218 406 REVQEICREAAAENGSSITNLDAFLKD 432 (436)
Q Consensus 406 ~~l~~~~~~a~~~~g~~~~~~~~~~~~ 432 (436)
..++...+.++...-+-+...++.++.
T Consensus 448 ~~w~~~~~~~m~~d~sw~~sa~~y~~l 474 (487)
T COG0297 448 LLWRKVQPNAMGADFSWDLSAKEYVEL 474 (487)
T ss_pred HHHHHHHHhhcccccCchhHHHHHHHH
Confidence 445566666554344445555555443
No 242
>PRK14098 glycogen synthase; Provisional
Probab=52.04 E-value=24 Score=35.57 Aligned_cols=40 Identities=10% Similarity=0.004 Sum_probs=31.2
Q ss_pred CCCcEEEEEcCC------CccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 11 TSLCHVLALPYP------GRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 11 ~~~~~vl~~~~~------~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
..||||+|++.- +.|=-.-.-+|.++|++ .||+|.++.|.
T Consensus 3 ~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~--~g~~v~v~~P~ 48 (489)
T PRK14098 3 RRNFKVLYVSGEVSPFVRVSALADFMASFPQALEE--EGFEARIMMPK 48 (489)
T ss_pred CCCcEEEEEeecchhhcccchHHHHHHHHHHHHHH--CCCeEEEEcCC
Confidence 345999998763 34555556789999999 99999999884
No 243
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=51.91 E-value=50 Score=28.13 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=25.9
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 17 LALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 17 l~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
.++-.|+.||..=|++|-+.|.++..+-....+.++.
T Consensus 41 ~lVvlGSGGHT~EMlrLl~~l~~~y~~r~yI~a~tD~ 77 (211)
T KOG3339|consen 41 TLVVLGSGGHTGEMLRLLEALQDLYSPRSYIAADTDE 77 (211)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhhcCceEEEEecCch
Confidence 4555789999999999999997754443333444443
No 244
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=51.78 E-value=39 Score=33.33 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=21.1
Q ss_pred CeeEEEEcCCcchHHHHhHhcCCCeEEE
Q 044218 119 AVTAIIADTYLPWVVDVGNRRNIPVASL 146 (436)
Q Consensus 119 ~~D~vI~D~~~~~~~~~A~~~gIP~v~~ 146 (436)
+||++|++.. ...+|+++|||++.+
T Consensus 371 ~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 371 PVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred CCCEEEECch---hHHHHHhcCCCEEEe
Confidence 8999999854 467899999999864
No 245
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=51.42 E-value=14 Score=35.15 Aligned_cols=42 Identities=10% Similarity=0.051 Sum_probs=32.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCC
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQ 61 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~ 61 (436)
||||+|+..|..|. .+|..|.+ .||+|+++......+.+.+.
T Consensus 2 ~mkI~IiG~G~mG~-----~~A~~L~~--~G~~V~~~~r~~~~~~~~~~ 43 (341)
T PRK08229 2 MARICVLGAGSIGC-----YLGGRLAA--AGADVTLIGRARIGDELRAH 43 (341)
T ss_pred CceEEEECCCHHHH-----HHHHHHHh--cCCcEEEEecHHHHHHHHhc
Confidence 57999999998884 57889999 99999999875443444443
No 246
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=51.19 E-value=89 Score=30.85 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=34.1
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHH-hCCCCcEEEEEecccccc
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLV-SRQPDILITFVVTEEWLG 56 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~-~~~~Gh~Vt~~~~~~~~~ 56 (436)
..|+++..++-|=..-...||..|. + +|+.|.++..+.+..
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~--~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKK--QGKKVLLVACDLYRP 141 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHh--CCCeEEEEeccccch
Confidence 3456666779999999999999997 6 799999999887654
No 247
>PLN02470 acetolactate synthase
Probab=50.68 E-value=55 Score=33.84 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=49.3
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCC-Cccccccc--CCCcEEeecc--------chhhhccccCcceeeccCCcc------h
Q 044218 268 MDEIIAGIRNSGVRYLWVTRGDT-SRFKDGHA--DDRGIVVPWC--------DQLRVLCHASIGGFWTHCGLN------S 330 (436)
Q Consensus 268 ~~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~--~~~~~v~~~~--------pq~~ll~~~~~~~~I~hgG~~------s 330 (436)
-..+++.|++.|++.|+.+.++. ..+.+. + .++++++.-. -...-...-..+++++|.|-| .
T Consensus 16 a~~l~~~L~~~GV~~vFg~pG~~~~~l~da-l~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~g 94 (585)
T PLN02470 16 ADILVEALEREGVDTVFAYPGGASMEIHQA-LTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGPGATNLVTG 94 (585)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccHHHHHH-HhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHH
Confidence 56789999999999999888764 122111 1 1235544221 111111223455599999955 6
Q ss_pred HHHHHhcCCcEeecc
Q 044218 331 TIESLYAGVPMLTFP 345 (436)
Q Consensus 331 ~~eal~~GvP~l~~P 345 (436)
+.+|...++|+|++.
T Consensus 95 ia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 95 LADALLDSVPLVAIT 109 (585)
T ss_pred HHHHHhcCCcEEEEe
Confidence 779999999999995
No 248
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=50.46 E-value=71 Score=31.60 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=21.6
Q ss_pred cceeeccCCcc------hHHHHHhcCCcEeecc
Q 044218 319 IGGFWTHCGLN------STIESLYAGVPMLTFP 345 (436)
Q Consensus 319 ~~~~I~hgG~~------s~~eal~~GvP~l~~P 345 (436)
.+++++|+|-| .+.+|.+.++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 96 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVLT 96 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEEe
Confidence 33489998855 6679999999999993
No 249
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=50.43 E-value=1.4e+02 Score=24.91 Aligned_cols=38 Identities=13% Similarity=0.256 Sum_probs=33.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccc
Q 044218 16 VLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWL 55 (436)
Q Consensus 16 vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~ 55 (436)
+++...++-|=......++..+.+ .|..|.++..+.+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~--~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKK--KGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEEEcCCCC
Confidence 577788899999999999999999 99999999877554
No 250
>PRK09620 hypothetical protein; Provisional
Probab=49.96 E-value=21 Score=31.88 Aligned_cols=38 Identities=13% Similarity=-0.013 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCccChHHH------------HHHHHHHHhCCCCcEEEEEecc
Q 044218 13 LCHVLALPYPGRGHVNPM------------MNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~------------l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
.++|++...|+.=.+.|. ..||++|.+ +|++|+++...
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~--~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELIS--KGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 467777777655444332 578999999 99999999765
No 251
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=49.66 E-value=1.1e+02 Score=28.30 Aligned_cols=33 Identities=12% Similarity=-0.088 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
.++|+++..|..| .++|..|.+ .||+|+++...
T Consensus 3 ~~kIaViGaG~mG-----~~iA~~la~--~G~~V~l~d~~ 35 (287)
T PRK08293 3 IKNVTVAGAGVLG-----SQIAFQTAF--HGFDVTIYDIS 35 (287)
T ss_pred ccEEEEECCCHHH-----HHHHHHHHh--cCCeEEEEeCC
Confidence 4689999888888 568889999 99999998754
No 252
>PLN02891 IMP cyclohydrolase
Probab=49.62 E-value=95 Score=31.29 Aligned_cols=62 Identities=11% Similarity=0.083 Sum_probs=43.3
Q ss_pred CCCCCCCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecC--CCCCC
Q 044218 5 PAQVKPTSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLP--NTIPS 78 (436)
Q Consensus 5 ~~~~~~~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~--~~l~~ 78 (436)
|.++++...+|.++.-+-=.| ...+|+.|++ .|+++ +++.-....++.. |+.+..+. .++|+
T Consensus 14 ~~~~~~~~~krALISVsDKtg----i~~fAk~L~~--~gveI--iSTgGTak~L~e~----Gi~v~~Vsd~TgfPE 77 (547)
T PLN02891 14 PQSSPSSGKKQALISLSDKTD----LALLANGLQE--LGYTI--VSTGGTASALEAA----GVSVTKVEELTNFPE 77 (547)
T ss_pred ccCCCCccccEEEEEEecccC----HHHHHHHHHH--CCCEE--EEcchHHHHHHHc----CCceeeHHhccCCch
Confidence 445556666777776654444 7889999999 87765 5566566677777 88888886 45665
No 253
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=49.52 E-value=33 Score=32.14 Aligned_cols=36 Identities=11% Similarity=0.026 Sum_probs=30.0
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 11 TSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 11 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
.+.|+|+|+..|..|. ++|+.|.+ .||+|+++....
T Consensus 2 ~~~m~I~iiG~G~~G~-----~lA~~l~~--~G~~V~~~~r~~ 37 (308)
T PRK14619 2 TQPKTIAILGAGAWGS-----TLAGLASA--NGHRVRVWSRRS 37 (308)
T ss_pred CCCCEEEEECccHHHH-----HHHHHHHH--CCCEEEEEeCCC
Confidence 3568999998888774 78999999 999999987653
No 254
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=49.17 E-value=62 Score=28.55 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCcc--ChHHHHHHHHHHHh
Q 044218 13 LCHVLALPYPGRG--HVNPMMNICKLLVS 39 (436)
Q Consensus 13 ~~~vl~~~~~~~G--H~~p~l~la~~L~~ 39 (436)
|++|++..++-+| ..||.-.++++|..
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~ 29 (215)
T PRK13197 1 MMKILVTGFDPFGGEKINPSWEAVKQLPG 29 (215)
T ss_pred CCEEEEeeccCCCCCCCCcHHHHHHHccc
Confidence 5789888886443 48999999999955
No 255
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=49.10 E-value=73 Score=27.32 Aligned_cols=43 Identities=19% Similarity=0.243 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecC--CCCCC
Q 044218 28 NPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLP--NTIPS 78 (436)
Q Consensus 28 ~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~--~~l~~ 78 (436)
.-.+.||+.|.+ .|+++. .+.-..+.+++. |+.+..+. .++|+
T Consensus 11 ~~l~~lAk~L~~--lGf~I~--AT~GTAk~L~e~----GI~v~~V~k~TgfpE 55 (187)
T cd01421 11 TGLVEFAKELVE--LGVEIL--STGGTAKFLKEA----GIPVTDVSDITGFPE 55 (187)
T ss_pred ccHHHHHHHHHH--CCCEEE--EccHHHHHHHHc----CCeEEEhhhccCCcH
Confidence 447899999999 999984 455566777877 88877775 45555
No 256
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=48.95 E-value=31 Score=28.05 Aligned_cols=39 Identities=15% Similarity=0.042 Sum_probs=35.8
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEec
Q 044218 11 TSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVT 51 (436)
Q Consensus 11 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~ 51 (436)
.+++||++.+.+.-||-.-.--+++.|+. .|++|.....
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d--~GfeVi~~g~ 48 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALAD--AGFEVINLGL 48 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHh--CCceEEecCC
Confidence 47899999999999999999999999999 9999998653
No 257
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=48.92 E-value=2e+02 Score=26.17 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=37.4
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCC
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTI 76 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l 76 (436)
+++||+++.+++...-. ...++|.+ .|++|.++......+.... ...++..-+|-++
T Consensus 2 ~~~kvaVl~~pG~n~d~---e~~~Al~~--aG~~v~~v~~~~~~~~~~~---l~~~DgLvipGGf 58 (261)
T PRK01175 2 ESIRVAVLRMEGTNCED---ETVKAFRR--LGVEPEYVHINDLAAERKS---VSDYDCLVIPGGF 58 (261)
T ss_pred CCCEEEEEeCCCCCCHH---HHHHHHHH--CCCcEEEEeeccccccccc---hhhCCEEEECCCC
Confidence 35799999998776443 55799989 9999998876432211111 1256777777664
No 258
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=48.65 E-value=48 Score=27.78 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=16.6
Q ss_pred ChHHHHHHHHHHHhC-CCCcEEEEE
Q 044218 26 HVNPMMNICKLLVSR-QPDILITFV 49 (436)
Q Consensus 26 H~~p~l~la~~L~~~-~~Gh~Vt~~ 49 (436)
|....-+|+++|.+. ..+++|.++
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~ 25 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVV 25 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 777888999999872 125566543
No 259
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=48.16 E-value=18 Score=35.96 Aligned_cols=66 Identities=18% Similarity=0.294 Sum_probs=44.9
Q ss_pred cCCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCccchHHHHHH
Q 044218 325 HCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSDERKEMSKR 404 (436)
Q Consensus 325 hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~ 404 (436)
|=|. ++.||+++|+|++..= +-.-+..++.. -.|..+++ .. -....+.+++.++..| ++++.+
T Consensus 377 ~FGi-v~IEAMa~glPvvAt~----~GGP~EiV~~~-~tG~l~dp-~~-----e~~~~~a~~~~kl~~~-----p~l~~~ 439 (495)
T KOG0853|consen 377 HFGI-VPIEAMACGLPVVATN----NGGPAEIVVHG-VTGLLIDP-GQ-----EAVAELADALLKLRRD-----PELWAR 439 (495)
T ss_pred Cccc-eeHHHHhcCCCEEEec----CCCceEEEEcC-CcceeeCC-ch-----HHHHHHHHHHHHHhcC-----HHHHHH
Confidence 4443 7899999999999864 33334445423 55888887 11 2334799999999998 787665
Q ss_pred HHH
Q 044218 405 ARE 407 (436)
Q Consensus 405 a~~ 407 (436)
..+
T Consensus 440 ~~~ 442 (495)
T KOG0853|consen 440 MGK 442 (495)
T ss_pred HHH
Confidence 443
No 260
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=48.06 E-value=1.3e+02 Score=25.30 Aligned_cols=75 Identities=11% Similarity=0.162 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCCeEEEEEcCCC-CcccccccC--CCcEEeeccc--------hhh--hccccCcceeeccCCc------c
Q 044218 269 DEIIAGIRNSGVRYLWVTRGDT-SRFKDGHAD--DRGIVVPWCD--------QLR--VLCHASIGGFWTHCGL------N 329 (436)
Q Consensus 269 ~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~~--~~~~v~~~~p--------q~~--ll~~~~~~~~I~hgG~------~ 329 (436)
+.+++.|++.|++.++.+.+.. ..+.+. +. +.++++.-.. ... +-..+.+ +++|.|- +
T Consensus 5 ~~l~~~L~~~Gv~~vfgvpG~~~~~l~~a-l~~~~~i~~i~~~~E~~A~~~A~g~ar~~g~~~v--~~~~~GpG~~n~~~ 81 (172)
T PF02776_consen 5 EALAEALKANGVTHVFGVPGSGNLPLLDA-LEKSPGIRFIPVRHEQGAAFMADGYARATGRPGV--VIVTSGPGATNALT 81 (172)
T ss_dssp HHHHHHHHHTT-SEEEEE--GGGHHHHHH-HHHTTTSEEEE-SSHHHHHHHHHHHHHHHSSEEE--EEEETTHHHHTTHH
T ss_pred HHHHHHHHHCCCeEEEEEeChhHhHHHHH-hhhhcceeeecccCcchhHHHHHHHHHhhccceE--EEeecccchHHHHH
Confidence 4567777777777777666543 111111 11 1344442221 111 2233444 8888874 4
Q ss_pred hHHHHHhcCCcEeeccc
Q 044218 330 STIESLYAGVPMLTFPL 346 (436)
Q Consensus 330 s~~eal~~GvP~l~~P~ 346 (436)
++.+|...++|+|++.-
T Consensus 82 ~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 82 GLANAYADRIPVLVITG 98 (172)
T ss_dssp HHHHHHHTT-EEEEEEE
T ss_pred HHhhcccceeeEEEEec
Confidence 67788999999999875
No 261
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=47.96 E-value=1.8e+02 Score=25.18 Aligned_cols=99 Identities=11% Similarity=0.086 Sum_probs=60.7
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccc------cccCCCCCCCCeeEEecCCCCCCCCCCCCC
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWL------GFIGSQSKPHNIRFRTLPNTIPSEHGRAND 85 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~------~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~ 85 (436)
..-.|.+.+..+.|=....+.+|-+... .|++|.++-.=... ..+++ ..++.+...+.++.-.. .+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g--~G~~V~ivQFlKg~~~~GE~~~l~~---l~~v~~~~~g~~~~~~~---~~ 92 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVG--HGKKVGVVQFIKGAWSTGERNLLEF---GGGVEFHVMGTGFTWET---QD 92 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHH--CCCeEEEEEEecCCCccCHHHHHhc---CCCcEEEECCCCCcccC---CC
Confidence 3457889999999999999999999999 99999997532111 11222 12688887775532111 11
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCc
Q 044218 86 FAGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYL 129 (436)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~ 129 (436)
.. .........+....+.+.+. .+|+||-|-..
T Consensus 93 ~~----e~~~~~~~~~~~a~~~l~~~-------~ydlvVLDEi~ 125 (191)
T PRK05986 93 RE----RDIAAAREGWEEAKRMLADE-------SYDLVVLDELT 125 (191)
T ss_pred cH----HHHHHHHHHHHHHHHHHhCC-------CCCEEEEehhh
Confidence 11 11122333444444444433 89999999654
No 262
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=47.27 E-value=1.5e+02 Score=27.63 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=36.3
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccc
Q 044218 11 TSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWL 55 (436)
Q Consensus 11 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~ 55 (436)
..+..|++...++.|=..-+..++..|.+ +|+.|.++..+...
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~--~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRR--RGLKVAVIAVDPSS 74 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecCCCC
Confidence 35677788888899999999999999999 99999998876544
No 263
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=47.10 E-value=22 Score=36.23 Aligned_cols=93 Identities=18% Similarity=0.221 Sum_probs=47.1
Q ss_pred cchhhhccccCcceeecc---CCcchHHHHHhcCCcEeecccc-----ccchhhHHHHhhhhceeeEeecCCccccCccC
Q 044218 308 CDQLRVLCHASIGGFWTH---CGLNSTIESLYAGVPMLTFPLF-----WDQVPNSKQIVQDWKTGWRVKKPEIASERLVT 379 (436)
Q Consensus 308 ~pq~~ll~~~~~~~~I~h---gG~~s~~eal~~GvP~l~~P~~-----~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t 379 (436)
+++.+++..|+++.|-+- -|+ |-+||.++|||.|+-=+. ..+... .. ... |+-|.-.. .. +
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGY-TPlE~~a~gVPsITTnLsGFG~~~~~~~~-~~-~~~-GV~VvdR~-~~------n 529 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGY-TPLECTAFGVPSITTNLSGFGCWMQEHIE-DP-EEY-GVYVVDRR-DK------N 529 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-H-HHHHHHHTT--EEEETTBHHHHHHHTTS--HH-GGG-TEEEE-SS-SS-------
T ss_pred CCHHHHhccCceeeeccccccccC-ChHHHhhcCCceeeccchhHHHHHHHhhc-cC-cCC-cEEEEeCC-CC------C
Confidence 356778888888655541 343 899999999999987763 222222 11 223 66544443 32 6
Q ss_pred HHHHHHHHHHHh----ccCccchHHHHHHHHHHHHH
Q 044218 380 RDEITELVKRFM----DLNSDERKEMSKRAREVQEI 411 (436)
Q Consensus 380 ~~~l~~~i~~ll----~~~~~~~~~~~~~a~~l~~~ 411 (436)
.++..+.|.+.| .-.+.++...|++++++++.
T Consensus 530 ~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~ 565 (633)
T PF05693_consen 530 YDESVNQLADFLYKFCQLSRRQRIIQRNRAERLSDL 565 (633)
T ss_dssp HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 666666665544 22222223456666665544
No 264
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=47.09 E-value=23 Score=32.96 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=31.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCC
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQ 61 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~ 61 (436)
|||+++..|+.|. .+|..|.+ .||+|+++..+...+.+.+.
T Consensus 1 mkI~IiG~G~iG~-----~~a~~L~~--~g~~V~~~~r~~~~~~~~~~ 41 (305)
T PRK12921 1 MRIAVVGAGAVGG-----TFGGRLLE--AGRDVTFLVRPKRAKALRER 41 (305)
T ss_pred CeEEEECCCHHHH-----HHHHHHHH--CCCceEEEecHHHHHHHHhC
Confidence 5799998888774 57888999 99999999875444445544
No 265
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=46.98 E-value=43 Score=34.64 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=41.2
Q ss_pred HHHHHHHHhCCCeEEEEEcCCCC-cccccccCCCcEEeec--------cchhh--hccccCcceeeccCCcc------hH
Q 044218 269 DEIIAGIRNSGVRYLWVTRGDTS-RFKDGHADDRGIVVPW--------CDQLR--VLCHASIGGFWTHCGLN------ST 331 (436)
Q Consensus 269 ~~l~~al~~~~~~~i~~~~~~~~-~~~~~~~~~~~~v~~~--------~pq~~--ll~~~~~~~~I~hgG~~------s~ 331 (436)
..+++.|++.|++.|+...++.. .+.+....++++++.- +-+.. +-..+.+ +++|.|-| .+
T Consensus 5 ~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv--~~~t~GPG~~n~l~~i 82 (586)
T PRK06276 5 EAIIKALEAEGVKIIFGYPGGALLPFYDALYDSDLIHILTRHEQAAAHAADGYARASGKVGV--CVATSGPGATNLVTGI 82 (586)
T ss_pred HHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEeccHHHHHHHHHHHHHHhCCCEE--EEECCCccHHHHHHHH
Confidence 44667777777777776665421 1111100123333211 11111 1223444 89998854 77
Q ss_pred HHHHhcCCcEeecc
Q 044218 332 IESLYAGVPMLTFP 345 (436)
Q Consensus 332 ~eal~~GvP~l~~P 345 (436)
.+|.+.++|+|++.
T Consensus 83 ~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 83 ATAYADSSPVIALT 96 (586)
T ss_pred HHHHhcCCCEEEEe
Confidence 79999999999984
No 266
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=46.64 E-value=33 Score=27.04 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=33.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 15 ~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
||++.+.++-.|-.-..-++.-|+. .|++|.+.....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~--~G~~vi~lG~~v 37 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRD--AGFEVIYTGLRQ 37 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHH--CCCEEEECCCCC
Confidence 6899999999999999999999999 999999988643
No 267
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=46.35 E-value=24 Score=29.47 Aligned_cols=31 Identities=10% Similarity=0.084 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEe
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVV 50 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~ 50 (436)
|++|.|+..|..| .++|+.|.+ .||+|+.+-
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~--~g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAK--AGYEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHH--TTTEEEEEE
T ss_pred CCEEEEEchHHHH-----HHHHHHHHh--cCCeEEeec
Confidence 6899999998777 478999999 999999875
No 268
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=46.15 E-value=21 Score=33.58 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=25.8
Q ss_pred CeeEEE-EcCCc-chHHHHhHhcCCCeEEEcchhH
Q 044218 119 AVTAII-ADTYL-PWVVDVGNRRNIPVASLWTMSA 151 (436)
Q Consensus 119 ~~D~vI-~D~~~-~~~~~~A~~~gIP~v~~~~~~~ 151 (436)
.||+|| .|+.. ..++.=|.++|||+|.+..+.+
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 599986 56544 7788889999999999876554
No 269
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=46.00 E-value=24 Score=30.01 Aligned_cols=43 Identities=14% Similarity=0.079 Sum_probs=33.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccC
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIG 59 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~ 59 (436)
+||++.-.|+.| ..-...+.+.|++ +|++|.++.++....++.
T Consensus 1 k~I~lgvtGs~~-a~~~~~ll~~L~~--~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 1 KKILLAVTGSIA-AYKAADLTSQLTK--LGYDVTVLMTQAATQFIT 43 (177)
T ss_pred CEEEEEEcCHHH-HHHHHHHHHHHHH--CCCEEEEEEChHHHhhcc
Confidence 367777777654 4466799999999 999999999987766655
No 270
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=45.64 E-value=54 Score=28.20 Aligned_cols=32 Identities=9% Similarity=0.130 Sum_probs=25.5
Q ss_pred eEEEEcCCc-chHHHHhHhcCCCeEEEcchhHH
Q 044218 121 TAIIADTYL-PWVVDVGNRRNIPVASLWTMSAL 152 (436)
Q Consensus 121 D~vI~D~~~-~~~~~~A~~~gIP~v~~~~~~~~ 152 (436)
.++|...+. +.+..+|+++|+|.|++.|+...
T Consensus 61 ~~liGSSlGG~~A~~La~~~~~~avLiNPav~p 93 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYGLPAVLINPAVRP 93 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCH
Confidence 477777655 88889999999999998776544
No 271
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=45.64 E-value=1.2e+02 Score=26.43 Aligned_cols=145 Identities=8% Similarity=-0.032 Sum_probs=76.1
Q ss_pred CCCeEEecCCCCCCCCCcccChHHHHHHHHHHHhCCCeEEEEEcCCCCcccccccC-CCcEEeeccchhhhccccCccee
Q 044218 244 SFPVLLAQFCTSHWEAFYSVSSAQMDEIIAGIRNSGVRYLWVTRGDTSRFKDGHAD-DRGIVVPWCDQLRVLCHASIGGF 322 (436)
Q Consensus 244 ~~~~~~vGpl~~~wGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~-~~~~v~~~~pq~~ll~~~~~~~~ 322 (436)
..+++.||. |.++ ...++.|.+.|..+.++.......+... .+ ..+.......+..-+..+++ +
T Consensus 10 ~k~vLVIGg-----G~va-------~~ka~~Ll~~ga~V~VIs~~~~~~l~~l-~~~~~i~~~~~~~~~~~l~~adl--V 74 (202)
T PRK06718 10 NKRVVIVGG-----GKVA-------GRRAITLLKYGAHIVVISPELTENLVKL-VEEGKIRWKQKEFEPSDIVDAFL--V 74 (202)
T ss_pred CCEEEEECC-----CHHH-------HHHHHHHHHCCCeEEEEcCCCCHHHHHH-HhCCCEEEEecCCChhhcCCceE--E
Confidence 457889983 3222 3445667777877666543221222222 12 23444444444555667777 8
Q ss_pred eccCCcchHHHHHh----cCCcEeeccccccchhhHHH-----HhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 323 WTHCGLNSTIESLY----AGVPMLTFPLFWDQVPNSKQ-----IVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 323 I~hgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~-----~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
|.--+.-.+++.++ .|++.-+ .|.+..+.. +.+- ++-+.+.. . +..-.-+..|++.|.+++..
T Consensus 75 iaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g-~l~iaIsT-~--G~sP~la~~lr~~ie~~~~~ 146 (202)
T PRK06718 75 IAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRG-KLTISVST-D--GASPKLAKKIRDELEALYDE 146 (202)
T ss_pred EEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcC-CeEEEEEC-C--CCChHHHHHHHHHHHHHcch
Confidence 88888777777665 3544322 455444332 2222 33333433 1 11223456688888877743
Q ss_pred CccchHHHHHHHHHHHHHHHH
Q 044218 394 NSDERKEMSKRAREVQEICRE 414 (436)
Q Consensus 394 ~~~~~~~~~~~a~~l~~~~~~ 414 (436)
+. ..+-+.+.++++.+++
T Consensus 147 ~~---~~~~~~~~~~R~~~k~ 164 (202)
T PRK06718 147 SY---ESYIDFLYECRQKIKE 164 (202)
T ss_pred hH---HHHHHHHHHHHHHHHH
Confidence 11 3556666666666664
No 272
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=45.42 E-value=77 Score=27.81 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=20.1
Q ss_pred cEEEEEcCCCcc--ChHHHHHHHHHHHh
Q 044218 14 CHVLALPYPGRG--HVNPMMNICKLLVS 39 (436)
Q Consensus 14 ~~vl~~~~~~~G--H~~p~l~la~~L~~ 39 (436)
|+|++..++-+| -.||...++++|..
T Consensus 1 M~vLiTGF~PF~g~~~NPS~~~v~~L~~ 28 (209)
T PRK13193 1 MTVLLFGFEPFLEYKENPSQLIVEALNG 28 (209)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHHhhc
Confidence 568888776444 48999999999966
No 273
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=45.39 E-value=52 Score=33.11 Aligned_cols=45 Identities=13% Similarity=0.013 Sum_probs=38.5
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccccccc
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFI 58 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~ 58 (436)
...-+++...|+.|=..=.+.++.+..+ +|..|.+++.++..+.+
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~--~ge~~~y~s~eEs~~~i 306 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACA--NKERAILFAYEESRAQL 306 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEEeeCCHHHH
Confidence 3456788888999999999999999999 99999999988776654
No 274
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=45.27 E-value=1.7e+02 Score=25.84 Aligned_cols=37 Identities=19% Similarity=0.100 Sum_probs=30.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccc
Q 044218 16 VLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEW 54 (436)
Q Consensus 16 vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~ 54 (436)
+++-.--+.|--.=+.+++.-+.. .||.|++++++.-
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~--~g~~v~yvsTe~T 67 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLM--NGYRVTYVSTELT 67 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHh--CCceEEEEEechh
Confidence 344444577888889999999999 9999999998753
No 275
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=45.09 E-value=28 Score=23.56 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=35.9
Q ss_pred ccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 044218 374 SERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKD 432 (436)
Q Consensus 374 ~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~ 432 (436)
+++.++.+++...+..+... ...+...++-+.+-+.++.+++..-++++|++-
T Consensus 13 ~~G~i~~~el~~~~~~~~~~------~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 13 GDGYISKEELRRALKHLGRD------MSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp SSSEEEHHHHHHHHHHTTSH------STHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhccc------ccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 46889999999999888643 113333344444445567788887888888764
No 276
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=44.94 E-value=73 Score=27.91 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=20.0
Q ss_pred cEEEEEcCCCcc--ChHHHHHHHHHHHh
Q 044218 14 CHVLALPYPGRG--HVNPMMNICKLLVS 39 (436)
Q Consensus 14 ~~vl~~~~~~~G--H~~p~l~la~~L~~ 39 (436)
|+|++..++-+| ..||...++++|..
T Consensus 1 M~ILvTGF~PF~~~~~NPS~~~~~~L~~ 28 (208)
T PRK13194 1 MKVLVTGFEPFGGDKKNPTMDIVKALDG 28 (208)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHhccc
Confidence 568877776443 48999999999965
No 277
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=44.66 E-value=1.2e+02 Score=28.52 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=25.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
|||+|+..+..+ +...++|.+ +||+|..+.+..
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~--~~~~i~~Vvt~p 33 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELRE--DNFEVVGVVTQP 33 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHh--CCCcEEEEEcCC
Confidence 689999777654 667788888 899998877643
No 278
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=44.64 E-value=37 Score=29.69 Aligned_cols=35 Identities=6% Similarity=-0.042 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccc
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEW 54 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~ 54 (436)
||+++++..|-.| -+||++|.+ .||+|++.+...-
T Consensus 1 m~~~~i~GtGniG-----~alA~~~a~--ag~eV~igs~r~~ 35 (211)
T COG2085 1 MMIIAIIGTGNIG-----SALALRLAK--AGHEVIIGSSRGP 35 (211)
T ss_pred CcEEEEeccChHH-----HHHHHHHHh--CCCeEEEecCCCh
Confidence 5777777776555 578999999 9999999866533
No 279
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=44.64 E-value=39 Score=28.62 Aligned_cols=113 Identities=10% Similarity=0.069 Sum_probs=60.5
Q ss_pred ccChHHHHHHHHHH-HhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCC-------------CCC-----CCC-CC
Q 044218 24 RGHVNPMMNICKLL-VSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNT-------------IPS-----EHG-RA 83 (436)
Q Consensus 24 ~GH~~p~l~la~~L-~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~-------------l~~-----~~~-~~ 83 (436)
.+.+.-.+..|+.+ .+ .|.+|.+.-+. ..+.+++.. ++.+..++.. ... .+. ..
T Consensus 16 ~~~~e~~v~~a~~~~~~--~g~dViIsRG~-ta~~lr~~~---~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~ 89 (176)
T PF06506_consen 16 EASLEEAVEEARQLLES--EGADVIISRGG-TAELLRKHV---SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNII 89 (176)
T ss_dssp E--HHHHHHHHHHHHTT--TT-SEEEEEHH-HHHHHHCC----SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-S
T ss_pred EecHHHHHHHHHHhhHh--cCCeEEEECCH-HHHHHHHhC---CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEeccccc
Confidence 35677788999999 77 89999887655 333343331 4555555410 000 000 01
Q ss_pred CCHHHHHHHHH-------HhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHH
Q 044218 84 NDFAGFLEAVF-------TKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSAL 152 (436)
Q Consensus 84 ~~~~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~ 152 (436)
.++..+.+.+- -.-...++..+++++.. +.|++|++.. ....|+++|+|++.+.++...
T Consensus 90 ~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~-------G~~viVGg~~---~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 90 PGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAE-------GVDVIVGGGV---VCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp CCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHT-------T--EEEESHH---HHHHHHHTTSEEEESS--HHH
T ss_pred HHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHc-------CCcEEECCHH---HHHHHHHcCCcEEEEEecHHH
Confidence 12222222210 01134566777887776 8999999953 468899999999998775443
No 280
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=44.17 E-value=1.2e+02 Score=29.26 Aligned_cols=36 Identities=19% Similarity=0.101 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCC-------cEEEEEecccc
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPD-------ILITFVVTEEW 54 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~G-------h~Vt~~~~~~~ 54 (436)
.+++|.++..|++| .+||..|.+ .| |+|++.+.++.
T Consensus 10 ~~~ki~ViGaG~wG-----tAlA~~l~~--n~~~~~~~~~~V~lw~~~~~ 52 (365)
T PTZ00345 10 GPLKVSVIGSGNWG-----SAISKVVGE--NTQRNYIFHNEVRMWVLEEI 52 (365)
T ss_pred CCCeEEEECCCHHH-----HHHHHHHHh--cCCcccCCCCeEEEEEeccc
Confidence 45899999999998 578999998 87 89999987753
No 281
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=44.02 E-value=1.2e+02 Score=23.42 Aligned_cols=85 Identities=12% Similarity=0.079 Sum_probs=51.4
Q ss_pred ChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHH
Q 044218 26 HVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPSEHGRANDFAGFLEAVFTKMEAPFEELL 105 (436)
Q Consensus 26 H~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 105 (436)
+=.-++++|+.|.+ .||++. +++-..+.+++. |+.+..+... +. . ..+ ++.
T Consensus 10 ~K~~~~~~a~~l~~--~G~~i~--AT~gTa~~L~~~----Gi~~~~v~~~-~~----~-------------g~~---~i~ 60 (112)
T cd00532 10 VKAMLVDLAPKLSS--DGFPLF--ATGGTSRVLADA----GIPVRAVSKR-HE----D-------------GEP---TVD 60 (112)
T ss_pred cHHHHHHHHHHHHH--CCCEEE--ECcHHHHHHHHc----CCceEEEEec-CC----C-------------CCc---HHH
Confidence 44567899999999 999883 455555666666 7766655311 00 0 112 223
Q ss_pred HHhhc-CCCCCCCCCeeEEEEcC--C--------cchHHHHhHhcCCCeEEE
Q 044218 106 DRLLL-DDDEQPAAAVTAIIADT--Y--------LPWVVDVGNRRNIPVASL 146 (436)
Q Consensus 106 ~~~~~-~~~~~~~~~~D~vI~D~--~--------~~~~~~~A~~~gIP~v~~ 146 (436)
+.+++ . ++|+||.-+ . .+.-...|-.++||+++.
T Consensus 61 ~~i~~~g-------~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 61 AAIAEKG-------KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred HHHhCCC-------CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 33333 3 899998632 2 123344688889999884
No 282
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=43.94 E-value=45 Score=31.55 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=20.6
Q ss_pred CeeEEEEcCCcc-------h---HHHHhHhcCCCeEEE
Q 044218 119 AVTAIIADTYLP-------W---VVDVGNRRNIPVASL 146 (436)
Q Consensus 119 ~~D~vI~D~~~~-------~---~~~~A~~~gIP~v~~ 146 (436)
+||++|+-+-+- | +..+.++++||.++-
T Consensus 80 ~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 80 KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 999999987541 1 223557999999984
No 283
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=43.32 E-value=21 Score=33.09 Aligned_cols=41 Identities=15% Similarity=0.073 Sum_probs=30.3
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEec-cccccccCCC
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVT-EEWLGFIGSQ 61 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~-~~~~~~~~~~ 61 (436)
|+|+++..|..| ..+|..|.+ .||+|+++.. ++..+.+.+.
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~--~g~~V~~~~r~~~~~~~~~~~ 42 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQ--AGHDVTLVARRGAHLDALNEN 42 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHh--CCCeEEEEECChHHHHHHHHc
Confidence 578898888777 467888999 9999999987 3333444443
No 284
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=43.29 E-value=1e+02 Score=25.66 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=27.1
Q ss_pred cCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 20 PYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 20 ~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
+-|+-|=..-.+.||..|++ .|++|.++-.+
T Consensus 7 ~kgG~GKTt~a~~LA~~la~--~g~~vllvD~D 37 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAK--LGYKVGLLDAD 37 (169)
T ss_pred CCCcCChhHHHHHHHHHHHH--cCCcEEEEeCC
Confidence 34788999999999999999 99999998665
No 285
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=43.09 E-value=32 Score=30.10 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=33.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
|+-|++..+|+.|-....-.||++|.+ ++|+|.-.+.+
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~--~i~~vi~l~kd 38 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQ--EIWRVIHLEKD 38 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHH--hhhhccccchh
Confidence 466888899999999999999999999 99998776554
No 286
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=42.93 E-value=9.7 Score=36.73 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=35.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccC
Q 044218 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIG 59 (436)
Q Consensus 15 ~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~ 59 (436)
-|++-.-|+.|--.=+|.++..|++ +| .|.+++.++..++++
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~--~~-~vLYVsGEES~~Qik 136 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAK--RG-KVLYVSGEESLQQIK 136 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHh--cC-cEEEEeCCcCHHHHH
Confidence 3566666899999999999999999 99 999999998877654
No 287
>PRK14099 glycogen synthase; Provisional
Probab=42.67 E-value=38 Score=34.11 Aligned_cols=109 Identities=16% Similarity=0.223 Sum_probs=57.5
Q ss_pred HHHHhCCCeEEEEEcCCC---Cccc---ccccCCCc-EEeeccchhh-hc-cccCcceeec---cCCc-chHHHHHhcCC
Q 044218 273 AGIRNSGVRYLWVTRGDT---SRFK---DGHADDRG-IVVPWCDQLR-VL-CHASIGGFWT---HCGL-NSTIESLYAGV 339 (436)
Q Consensus 273 ~al~~~~~~~i~~~~~~~---~~~~---~~~~~~~~-~v~~~~pq~~-ll-~~~~~~~~I~---hgG~-~s~~eal~~Gv 339 (436)
..+.+.+.++++.-.++. +.+. .. .++++ .+.+|-.+.. ++ +.+++ |+. +=|. .+.+||+++|+
T Consensus 318 ~~l~~~~~~lvivG~G~~~~~~~l~~l~~~-~~~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ 394 (485)
T PRK14099 318 PTLLGEGAQLALLGSGDAELEARFRAAAQA-YPGQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGA 394 (485)
T ss_pred HHHHhcCcEEEEEecCCHHHHHHHHHHHHH-CCCCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCC
Confidence 333334666666544431 1121 12 24455 4567743322 33 34666 764 3333 37789999997
Q ss_pred cEeeccccc--cchhhHHH---HhhhhceeeEeecCCccccCccCHHHHHHHHHH---Hhcc
Q 044218 340 PMLTFPLFW--DQVPNSKQ---IVQDWKTGWRVKKPEIASERLVTRDEITELVKR---FMDL 393 (436)
Q Consensus 340 P~l~~P~~~--DQ~~na~~---~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~---ll~~ 393 (436)
|.|+....+ |.-..... .+.. +.|..++. -+++++.++|.+ ++++
T Consensus 395 ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l~~~--------~d~~~La~ai~~a~~l~~d 447 (485)
T PRK14099 395 VPVVARVGGLADTVVDANEMAIATGV-ATGVQFSP--------VTADALAAALRKTAALFAD 447 (485)
T ss_pred CcEEeCCCCccceeecccccccccCC-CceEEeCC--------CCHHHHHHHHHHHHHHhcC
Confidence 766654321 32111100 0111 36877776 489999999987 5555
No 288
>PRK08322 acetolactate synthase; Reviewed
Probab=42.58 E-value=68 Score=32.85 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=21.9
Q ss_pred cceeeccCCcc------hHHHHHhcCCcEeecc
Q 044218 319 IGGFWTHCGLN------STIESLYAGVPMLTFP 345 (436)
Q Consensus 319 ~~~~I~hgG~~------s~~eal~~GvP~l~~P 345 (436)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 44489998855 6779999999999985
No 289
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=42.47 E-value=35 Score=32.22 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
.+|+|+|+..|..| .++|..|.+ .||+|+++...
T Consensus 3 ~~m~I~iIG~G~mG-----~~ia~~L~~--~G~~V~~~~r~ 36 (328)
T PRK14618 3 HGMRVAVLGAGAWG-----TALAVLAAS--KGVPVRLWARR 36 (328)
T ss_pred CCCeEEEECcCHHH-----HHHHHHHHH--CCCeEEEEeCC
Confidence 36799999998888 468999999 99999998874
No 290
>PRK11823 DNA repair protein RadA; Provisional
Probab=42.21 E-value=21 Score=35.50 Aligned_cols=43 Identities=23% Similarity=0.243 Sum_probs=36.2
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccccccc
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFI 58 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~ 58 (436)
.-+++...|+.|=..=++.++..+.+ +|..|.|++.+...+.+
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~--~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAA--AGGKVLYVSGEESASQI 123 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEccccHHHH
Confidence 45677777899999999999999998 89999999987666543
No 291
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=42.20 E-value=29 Score=33.16 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=27.1
Q ss_pred chHHHHHHHHHhhcCCCCCCCCCeeEEE--EcCCc-chHHHHhHhcCCCeEEE
Q 044218 97 MEAPFEELLDRLLLDDDEQPAAAVTAII--ADTYL-PWVVDVGNRRNIPVASL 146 (436)
Q Consensus 97 ~~~~~~~ll~~~~~~~~~~~~~~~D~vI--~D~~~-~~~~~~A~~~gIP~v~~ 146 (436)
+...+.+++.+. +||+|| .|.+. .++..+|..++||++-+
T Consensus 55 ~~~~~~~~~~~~----------~Pd~Vlv~GD~~~~la~alaA~~~~ipv~Hi 97 (346)
T PF02350_consen 55 AIIELADVLERE----------KPDAVLVLGDRNEALAAALAAFYLNIPVAHI 97 (346)
T ss_dssp HHHHHHHHHHHH----------T-SEEEEETTSHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHhc----------CCCEEEEEcCCchHHHHHHHHHHhCCCEEEe
Confidence 444556677776 899987 45444 66788999999997665
No 292
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=41.85 E-value=2.1e+02 Score=23.92 Aligned_cols=113 Identities=17% Similarity=0.210 Sum_probs=62.3
Q ss_pred EEEcCCCccChHHHH-HHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCC----CCCCCC-----CCH
Q 044218 17 LALPYPGRGHVNPMM-NICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIP----SEHGRA-----NDF 86 (436)
Q Consensus 17 l~~~~~~~GH~~p~l-~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~----~~~~~~-----~~~ 86 (436)
+.+.+...+.+..++ .+|++|.. +|++|.=++.......-. ..+.+....++++-. .+.... -+.
T Consensus 2 aav~~~~~~~~d~lL~~~a~~L~~--~G~rv~G~vQ~~~~~~~~---~~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD~ 76 (159)
T PF10649_consen 2 AAVVYDDGGDIDALLAAFAARLRA--RGVRVAGLVQRNTADGDG---GRCDMDLRDLPSGRRIRISQDLGPGSRGCRLDP 76 (159)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh--CCCeEEEEeccccCCCCC---CccceEEEECCCCCEEEEeeccCCCCcccccCH
Confidence 345555667777766 68999999 999998877654221111 122566666664321 111110 122
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCc---------chHHHHhHhcCCCeEEEcchh
Q 044218 87 AGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYL---------PWVVDVGNRRNIPVASLWTMS 150 (436)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~---------~~~~~~A~~~gIP~v~~~~~~ 150 (436)
...-.. . ..+...+ +. .+|++|.+-|. ...+.-|-..|||+++..+..
T Consensus 77 ~~La~A-----~---~~l~~al-~~-------~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~ 133 (159)
T PF10649_consen 77 GALAEA-----S---AALRRAL-AE-------GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPR 133 (159)
T ss_pred HHHHHH-----H---HHHHHHH-hc-------CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHH
Confidence 222111 1 1222222 12 79999988653 334555678899999976543
No 293
>PRK13768 GTPase; Provisional
Probab=41.85 E-value=1.4e+02 Score=27.07 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=33.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccc
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEW 54 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~ 54 (436)
++-+++...++.|=..-+..++..|.. .|++|.++..++.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~--~g~~v~~i~~D~~ 41 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEE--QGYDVAIVNLDPA 41 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHh--cCCceEEEECCCc
Confidence 355677777888999999999999999 9999999876643
No 294
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=41.83 E-value=85 Score=28.51 Aligned_cols=42 Identities=12% Similarity=-0.005 Sum_probs=35.3
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccc
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWL 55 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~ 55 (436)
+..-+++...|+.|=..-++.++....+ +|..|.|++.+...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~--~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS--RGNPVLFVTVESPA 76 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh--CCCcEEEEEecCCc
Confidence 3456778888899999999999999888 89999999987533
No 295
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=41.80 E-value=21 Score=34.51 Aligned_cols=42 Identities=19% Similarity=0.179 Sum_probs=34.6
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccc
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGF 57 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~ 57 (436)
.-+++...|+.|=..=++.+|..+.+ .|..|.|++.+...+.
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~--~g~~VlYvs~EEs~~q 124 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAK--RGGKVLYVSGEESPEQ 124 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEECCcCHHH
Confidence 34567777899999999999999999 8999999988765544
No 296
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=41.76 E-value=1.4e+02 Score=24.68 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=23.8
Q ss_pred CCCccChHHHHHHHHHHHhCCCCcEEEEE
Q 044218 21 YPGRGHVNPMMNICKLLVSRQPDILITFV 49 (436)
Q Consensus 21 ~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~ 49 (436)
.++-|-..-.+.|++.|.+ +|.+|-++
T Consensus 6 ~~~~GKT~va~~L~~~l~~--~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKK--AGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHH--CCCcEEEE
Confidence 4567888899999999999 99999886
No 297
>PRK04940 hypothetical protein; Provisional
Probab=41.69 E-value=57 Score=27.83 Aligned_cols=33 Identities=12% Similarity=-0.045 Sum_probs=27.4
Q ss_pred CeeEEEEcCCc-chHHHHhHhcCCCeEEEcchhH
Q 044218 119 AVTAIIADTYL-PWVVDVGNRRNIPVASLWTMSA 151 (436)
Q Consensus 119 ~~D~vI~D~~~-~~~~~~A~~~gIP~v~~~~~~~ 151 (436)
+++++|...+. ++|.-+|+++|+|.|++.|+-.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~ 93 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNLF 93 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCCC
Confidence 46788888765 8999999999999999877543
No 298
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=41.68 E-value=33 Score=33.46 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=38.0
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCC
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGS 60 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~ 60 (436)
+++||++.-.|+. ..+-...+.+.|++ .|++|.++.++....++..
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~--~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRK--AGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHh--CCCEEEEEECHhHHHHHhH
Confidence 4678988888877 45588999999999 9999999999887776653
No 299
>PRK12377 putative replication protein; Provisional
Probab=41.63 E-value=41 Score=30.42 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=32.5
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccccc
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLG 56 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~ 56 (436)
..++|...++.|=..=..+||++|.+ .|+.|.|++.+....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~--~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLA--KGRSVIVVTVPDVMS 142 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH--cCCCeEEEEHHHHHH
Confidence 45777787888888888899999998 899998877664443
No 300
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=41.63 E-value=69 Score=33.03 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCCC-----cccccccC-CCcEEeeccc-h-------h--hhccccCcceeeccCCcc--
Q 044218 268 MDEIIAGIRNSGVRYLWVTRGDTS-----RFKDGHAD-DRGIVVPWCD-Q-------L--RVLCHASIGGFWTHCGLN-- 329 (436)
Q Consensus 268 ~~~l~~al~~~~~~~i~~~~~~~~-----~~~~~~~~-~~~~v~~~~p-q-------~--~ll~~~~~~~~I~hgG~~-- 329 (436)
...+++.|++.|++.|+.+.+... .+.+. .+ ++++++.-.. + . .+-..+. ++++|.|-|
T Consensus 5 ~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~-~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~g--v~~~t~GpG~~ 81 (572)
T PRK06456 5 ARILVDSLKREGVKVIFGIPGLSNMQIYDAFVED-LANGELRHVLMRHEQAAAHAADGYARASGVPG--VCTATSGPGTT 81 (572)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhh-ccCCCCeEEEeCcHHHHHHHHHHHHHhhCCCE--EEEeCCCCCHH
Confidence 356778888888888887766531 11110 01 1244332211 1 1 1112233 488888854
Q ss_pred ----hHHHHHhcCCcEeecc
Q 044218 330 ----STIESLYAGVPMLTFP 345 (436)
Q Consensus 330 ----s~~eal~~GvP~l~~P 345 (436)
.+.+|...++|+|++.
T Consensus 82 N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 82 NLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred HHHHHHHHHHhhCCCEEEEe
Confidence 6679999999999996
No 301
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=41.57 E-value=1.6e+02 Score=22.49 Aligned_cols=85 Identities=12% Similarity=0.097 Sum_probs=53.8
Q ss_pred cChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHH
Q 044218 25 GHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPSEHGRANDFAGFLEAVFTKMEAPFEEL 104 (436)
Q Consensus 25 GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (436)
.+-.-++++++.|.+ .|+++. +++...+.+++. |+.+..+...- . .. ..+
T Consensus 10 ~~k~~~~~~~~~l~~--~G~~l~--aT~gT~~~l~~~----gi~~~~v~~~~--~-----------------~~---~~i 59 (110)
T cd01424 10 RDKPEAVEIAKRLAE--LGFKLV--ATEGTAKYLQEA----GIPVEVVNKVS--E-----------------GR---PNI 59 (110)
T ss_pred CcHhHHHHHHHHHHH--CCCEEE--EchHHHHHHHHc----CCeEEEEeecC--C-----------------Cc---hhH
Confidence 355678899999999 999983 455566666666 77755542110 0 11 123
Q ss_pred HHHhhcCCCCCCCCCeeEEEEcCC-------cchHHHHhHhcCCCeEEE
Q 044218 105 LDRLLLDDDEQPAAAVTAIIADTY-------LPWVVDVGNRRNIPVASL 146 (436)
Q Consensus 105 l~~~~~~~~~~~~~~~D~vI~D~~-------~~~~~~~A~~~gIP~v~~ 146 (436)
.+.+++. ++|+||.-.. ...-...|-.+|||+++-
T Consensus 60 ~~~i~~~-------~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T~ 101 (110)
T cd01424 60 VDLIKNG-------EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFTT 101 (110)
T ss_pred HHHHHcC-------CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEec
Confidence 3333333 8999997431 244566788999999973
No 302
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=41.32 E-value=31 Score=30.84 Aligned_cols=44 Identities=7% Similarity=-0.091 Sum_probs=33.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCC--CcEEEEEeccccccccCCC
Q 044218 16 VLALPYPGRGHVNPMMNICKLLVSRQP--DILITFVVTEEWLGFIGSQ 61 (436)
Q Consensus 16 vl~~~~~~~GH~~p~l~la~~L~~~~~--Gh~Vt~~~~~~~~~~~~~~ 61 (436)
|++--.|+.+=+.-.+.+.+.|++ . ||+|.++.++...+.+...
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~--~~~g~~V~vv~T~~a~~~i~~~ 47 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKR--EIEELRVSTFVSRAGEEVVRMY 47 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHh--hcCCCeEEEEEChhHHhHHhhh
Confidence 455555555555789999999999 8 9999999998777666544
No 303
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=41.16 E-value=1e+02 Score=30.48 Aligned_cols=25 Identities=16% Similarity=0.489 Sum_probs=21.5
Q ss_pred CeeEEEEcCCcchHHHHhHhcCCCeEEE
Q 044218 119 AVTAIIADTYLPWVVDVGNRRNIPVASL 146 (436)
Q Consensus 119 ~~D~vI~D~~~~~~~~~A~~~gIP~v~~ 146 (436)
+||++|.+.. ...+|+++|||++.+
T Consensus 372 ~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 372 KIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred CCCEEEECch---hHHHHHHcCCCEEEe
Confidence 8999998854 568999999999875
No 304
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=40.58 E-value=1.6e+02 Score=29.60 Aligned_cols=108 Identities=17% Similarity=0.147 Sum_probs=70.9
Q ss_pred cEEeeccchhh---hccccCcceeec---cCCcchHH-HHHhcCC----cEeeccccccchhhHHHHhhhhceeeEeecC
Q 044218 302 GIVVPWCDQLR---VLCHASIGGFWT---HCGLNSTI-ESLYAGV----PMLTFPLFWDQVPNSKQIVQDWKTGWRVKKP 370 (436)
Q Consensus 302 ~~v~~~~pq~~---ll~~~~~~~~I~---hgG~~s~~-eal~~Gv----P~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~ 370 (436)
+++.+.+|+.. +++.+++ ++. .-|+|-+. |.++++. |+| +--++= |+ +.|.-++.+.+
T Consensus 364 ~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLI-LSefaG----aa---~~l~~AllVNP- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLV-LSEFAG----AA---VELKGALLTNP- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEE-Eecccc----ch---hhcCCCEEECC-
Confidence 34557777654 5667777 554 44888665 9999977 433 332221 11 23355788888
Q ss_pred CccccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044218 371 EIASERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDISR 435 (436)
Q Consensus 371 ~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 435 (436)
.+.++++++|.+.|+... ++=+++.+++.+.++. -++..=.+.|++.|++
T Consensus 433 -------~d~~~~A~ai~~AL~m~~---~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 433 -------YDPVRMDETIYVALAMPK---AEQQARMREMFDAVNY-----YDVQRWADEFLAAVSP 482 (487)
T ss_pred -------CCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhh
Confidence 689999999999998743 3445566666666663 4666668888887754
No 305
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=40.57 E-value=81 Score=29.49 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccc
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGF 57 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~ 57 (436)
||||+|+.+|..+ ...-++|.+ .||+|.-+.+......
T Consensus 1 ~mkivF~GTp~fa-----~~~L~~L~~--~~~eivaV~Tqpdkp~ 38 (307)
T COG0223 1 MMRIVFFGTPEFA-----VPSLEALIE--AGHEIVAVVTQPDKPA 38 (307)
T ss_pred CcEEEEEcCchhh-----HHHHHHHHh--CCCceEEEEeCCCCcc
Confidence 5899999988654 455677888 8899999887665543
No 306
>PLN02929 NADH kinase
Probab=40.48 E-value=1.4e+02 Score=27.80 Aligned_cols=97 Identities=9% Similarity=0.113 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEEcCCCCcccccccCCCcEEeeccchhhhccccCcceeeccCCcchHHHHHh---cCCc
Q 044218 264 SSAQMDEIIAGIRNSGVRYLWVTRGDTSRFKDGHADDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLY---AGVP 340 (436)
Q Consensus 264 ~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~---~GvP 340 (436)
-.+.+..+.+-|.+.|+.+....+.+ +. .....+++ +|+-||=||+..+.+ .++|
T Consensus 32 h~~~~~~~~~~L~~~gi~~~~v~r~~---~~-----------------~~~~~~Dl--vi~lGGDGT~L~aa~~~~~~iP 89 (301)
T PLN02929 32 HKDTVNFCKDILQQKSVDWECVLRNE---LS-----------------QPIRDVDL--VVAVGGDGTLLQASHFLDDSIP 89 (301)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeeccc---cc-----------------cccCCCCE--EEEECCcHHHHHHHHHcCCCCc
Confidence 34556677777888887663322211 10 11233566 999999999999865 4688
Q ss_pred Eeeccccc------cchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 341 MLTFPLFW------DQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 341 ~l~~P~~~------DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
++.+=..- .+..|.-... . -+|--.. ++.+++.++|++++++
T Consensus 90 vlGIN~Gp~~~~~~~~~~~~~~~~-r-~lGfL~~---------~~~~~~~~~L~~il~g 137 (301)
T PLN02929 90 VLGVNSDPTQKDEVEEYSDEFDAR-R-STGHLCA---------ATAEDFEQVLDDVLFG 137 (301)
T ss_pred EEEEECCCcccccccccccccccc-c-Ccccccc---------CCHHHHHHHHHHHHcC
Confidence 87765431 1223332111 1 2443333 3789999999999976
No 307
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=40.44 E-value=2e+02 Score=26.51 Aligned_cols=41 Identities=7% Similarity=0.083 Sum_probs=33.9
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccC
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIG 59 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~ 59 (436)
.+++|+++..|..|. .+|+.|++ +||.|.++.-+...+...
T Consensus 2 ~~~~v~IvG~GliG~-----s~a~~l~~--~g~~v~i~g~d~~~~~~~ 42 (279)
T COG0287 2 ASMKVGIVGLGLMGG-----SLARALKE--AGLVVRIIGRDRSAATLK 42 (279)
T ss_pred CCcEEEEECCchHHH-----HHHHHHHH--cCCeEEEEeecCcHHHHH
Confidence 368899999998886 47999999 999999998887765443
No 308
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=40.39 E-value=62 Score=23.43 Aligned_cols=49 Identities=14% Similarity=0.300 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044218 379 TRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDISR 435 (436)
Q Consensus 379 t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 435 (436)
..+.|+++|+ +|.. . ..+.+.|++.+.+..+.|.....+++.|++..++
T Consensus 29 ~SEvvR~aLR-lle~-----~--e~~~~~Lr~~l~~g~~sG~~~~~~~~~~~~~~~~ 77 (80)
T PF03693_consen 29 ASEVVREALR-LLEE-----R--EAKLEALREALQEGLESGESEPFDMDDILARARR 77 (80)
T ss_dssp HHHHHHHHHH-HHHH-----H--HHHHHHHHHHHHHHHCT-EESS--HHHHHHHCCH
T ss_pred HHHHHHHHHH-HHHH-----H--HHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHh
Confidence 4566667775 5543 2 2345678888887766666665788888877643
No 309
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=40.25 E-value=44 Score=28.34 Aligned_cols=29 Identities=17% Similarity=0.083 Sum_probs=20.7
Q ss_pred CeeEEEEcCCcch--HHHHhHhcCCCeEEEc
Q 044218 119 AVTAIIADTYLPW--VVDVGNRRNIPVASLW 147 (436)
Q Consensus 119 ~~D~vI~D~~~~~--~~~~A~~~gIP~v~~~ 147 (436)
+||+||+...... ...--+..|||++.+.
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 8999998654432 3344578999998874
No 310
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=39.96 E-value=25 Score=30.02 Aligned_cols=43 Identities=9% Similarity=0.121 Sum_probs=32.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCC
Q 044218 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGS 60 (436)
Q Consensus 15 ~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~ 60 (436)
||++.-.|+.|-+. ...+.++|++ .|++|.++.++....++..
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~--~g~~V~vv~T~~A~~fv~~ 43 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKE--AGVEVHLVISDWAKETIKY 43 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHH--CCCEEEEEECccHHHHHHH
Confidence 35555556555444 4899999999 9999999999988776653
No 311
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=39.89 E-value=1.5e+02 Score=27.96 Aligned_cols=100 Identities=14% Similarity=0.155 Sum_probs=57.8
Q ss_pred CcEEEEEcCCCcc-----ChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCCCCCCCCCHH
Q 044218 13 LCHVLALPYPGRG-----HVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPSEHGRANDFA 87 (436)
Q Consensus 13 ~~~vl~~~~~~~G-----H~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~ 87 (436)
++-|+|.|+.+.| ...-+.+|++.|.+ +|++|.+++++...+..+.... . .+.... ++
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~--~~~~ivl~G~~~e~~~~~~i~~--~-----~~~~~~-------~l- 236 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLID--QGYQVVLFGSAKDHPAGNEIEA--L-----LPGELR-------NL- 236 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH--CCCEEEEEEChhhHHHHHHHHH--h-----CCcccc-------cC-
Confidence 3456666655433 23467899999998 8999999888755443322100 0 000000 00
Q ss_pred HHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcc
Q 044218 88 GFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWT 148 (436)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~ 148 (436)
.-...+.++..-+. +.|++|+. .+..+.+|..+|+|++.++.
T Consensus 237 --------~g~~sL~el~ali~---------~a~l~I~~--DSGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 237 --------AGETSLDEAVDLIA---------LAKAVVTN--DSGLMHVAAALNRPLVALYG 278 (334)
T ss_pred --------CCCCCHHHHHHHHH---------hCCEEEee--CCHHHHHHHHcCCCEEEEEC
Confidence 00112334444443 67999954 25577899999999998755
No 312
>PRK04328 hypothetical protein; Provisional
Probab=39.28 E-value=1.8e+02 Score=26.14 Aligned_cols=44 Identities=18% Similarity=-0.081 Sum_probs=35.1
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccc
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGF 57 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~ 57 (436)
...-+++...|+.|-..-.+.++.+-.+ +|..+.|++.+...+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~--~ge~~lyis~ee~~~~ 65 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ--MGEPGVYVALEEHPVQ 65 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh--cCCcEEEEEeeCCHHH
Confidence 3456777888899999999998887777 8999999998665543
No 313
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=39.15 E-value=1.7e+02 Score=22.56 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=51.4
Q ss_pred ChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCCCCCCCCCHHHHHHHHHHhchHHHHHHH
Q 044218 26 HVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPSEHGRANDFAGFLEAVFTKMEAPFEELL 105 (436)
Q Consensus 26 H~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 105 (436)
+-.-++++++.|.+ .|++|. +++...+.+.+. |+.+..+.... .... .+ .+.+.+++
T Consensus 11 dk~~~~~~a~~l~~--~G~~i~--aT~gTa~~L~~~----gi~~~~v~~~~--~~~~-~~------------~~~i~~~i 67 (116)
T cd01423 11 SKPELLPTAQKLSK--LGYKLY--ATEGTADFLLEN----GIPVTPVAWPS--EEPQ-ND------------KPSLRELL 67 (116)
T ss_pred cchhHHHHHHHHHH--CCCEEE--EccHHHHHHHHc----CCCceEeeecc--CCCC-CC------------chhHHHHH
Confidence 45568899999999 999883 455555666666 66554442100 0000 00 02223333
Q ss_pred HHhhcCCCCCCCCCeeEEEEcCC---------cchHHHHhHhcCCCeEE
Q 044218 106 DRLLLDDDEQPAAAVTAIIADTY---------LPWVVDVGNRRNIPVAS 145 (436)
Q Consensus 106 ~~~~~~~~~~~~~~~D~vI~D~~---------~~~~~~~A~~~gIP~v~ 145 (436)
++ . ++|+||.-+. .+.....|-.+|||+++
T Consensus 68 ~~---~-------~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 68 AE---G-------KIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred Hc---C-------CceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 33 3 8999997432 24455678899999975
No 314
>PRK08266 hypothetical protein; Provisional
Probab=39.09 E-value=1.4e+02 Score=30.57 Aligned_cols=75 Identities=20% Similarity=0.185 Sum_probs=43.0
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCC-Cccccccc---CCCcEEeeccc-h---------hhhccccCcceeeccCCcc----
Q 044218 268 MDEIIAGIRNSGVRYLWVTRGDT-SRFKDGHA---DDRGIVVPWCD-Q---------LRVLCHASIGGFWTHCGLN---- 329 (436)
Q Consensus 268 ~~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~---~~~~~v~~~~p-q---------~~ll~~~~~~~~I~hgG~~---- 329 (436)
...+++.|++.|++.++...+.. ..+.+. + .++++++.-.. + ..+-..+. +++.|.|-|
T Consensus 7 ~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~a-l~~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~~--v~~~t~GpG~~N~ 83 (542)
T PRK08266 7 GEAIVAGLVAHGVDTVFGLPGAQLYWLFDA-LYKAGDRIRVIHTRHEQAAGYMAFGYARSTGRPG--VCSVVPGPGVLNA 83 (542)
T ss_pred HHHHHHHHHHcCCCEEEECCCcchHHHHHH-HHhcCCCCeEEeeccHHHHHHHHHHHHHHhCCCe--EEEECCCCcHHHH
Confidence 34567777777777777766643 111111 1 12344432221 1 11112233 488998855
Q ss_pred --hHHHHHhcCCcEeecc
Q 044218 330 --STIESLYAGVPMLTFP 345 (436)
Q Consensus 330 --s~~eal~~GvP~l~~P 345 (436)
++.+|...++|+|++.
T Consensus 84 ~~gi~~A~~~~~Pvl~i~ 101 (542)
T PRK08266 84 GAALLTAYGCNSPVLCLT 101 (542)
T ss_pred HHHHHHHHhhCCCEEEEe
Confidence 6779999999999985
No 315
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=39.05 E-value=68 Score=27.35 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=23.5
Q ss_pred CeeEEEEcC--CcchHHHHhHhcCCCeEEE
Q 044218 119 AVTAIIADT--YLPWVVDVGNRRNIPVASL 146 (436)
Q Consensus 119 ~~D~vI~D~--~~~~~~~~A~~~gIP~v~~ 146 (436)
++|.|++=. .++.|..+|.++|+|++..
T Consensus 53 ~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 53 GIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred CCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 799998543 4578999999999999995
No 316
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=38.99 E-value=2.4e+02 Score=27.83 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=28.2
Q ss_pred EEEEEcCC-CccChHHHHHHHHHHHhCCCCcEEEEE-eccccc
Q 044218 15 HVLALPYP-GRGHVNPMMNICKLLVSRQPDILITFV-VTEEWL 55 (436)
Q Consensus 15 ~vl~~~~~-~~GH~~p~l~la~~L~~~~~Gh~Vt~~-~~~~~~ 55 (436)
+|++.... +.|-..-++.|.++|++ +|++|-=+ +.|.+.
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~--rg~~VqpfKvGPDYI 42 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRR--RGLKVQPFKVGPDYI 42 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHh--cCCcccccccCCCcc
Confidence 34444443 66999999999999999 99998643 344444
No 317
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=38.90 E-value=1.6e+02 Score=30.36 Aligned_cols=77 Identities=12% Similarity=0.148 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCC-ccccccc-C-CCcEEeeccc-hh---------hhccccCcceeeccCCcc---
Q 044218 266 AQMDEIIAGIRNSGVRYLWVTRGDTS-RFKDGHA-D-DRGIVVPWCD-QL---------RVLCHASIGGFWTHCGLN--- 329 (436)
Q Consensus 266 ~~~~~l~~al~~~~~~~i~~~~~~~~-~~~~~~~-~-~~~~v~~~~p-q~---------~ll~~~~~~~~I~hgG~~--- 329 (436)
..-..+++.|++.|++.++.+.++.. .+.+. + . .+++++.-.. +. .+-..+.+ +++|.|-|
T Consensus 14 ~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~da-l~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv--~~~t~GpG~~N 90 (564)
T PRK08155 14 TGAELIVRLLERQGIRIVTGIPGGAILPLYDA-LSQSTQIRHILARHEQGAGFIAQGMARTTGKPAV--CMACSGPGATN 90 (564)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCcccHHHHHH-HhccCCceEEEeccHHHHHHHHHHHHHHcCCCeE--EEECCCCcHHH
Confidence 34667899999999999988877631 12111 1 1 2344432211 11 12233444 88888855
Q ss_pred ---hHHHHHhcCCcEeecc
Q 044218 330 ---STIESLYAGVPMLTFP 345 (436)
Q Consensus 330 ---s~~eal~~GvP~l~~P 345 (436)
.+.+|...++|+|++.
T Consensus 91 ~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 91 LVTAIADARLDSIPLVCIT 109 (564)
T ss_pred HHHHHHHHHhcCCCEEEEe
Confidence 6779999999999985
No 318
>PLN02939 transferase, transferring glycosyl groups
Probab=38.70 E-value=59 Score=35.42 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=32.3
Q ss_pred CCCCcEEEEEcCC------CccChHHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 10 PTSLCHVLALPYP------GRGHVNPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 10 ~~~~~~vl~~~~~------~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
....|||+|+++- +.|=-.-.-+|.++|++ .||+|.+++|..
T Consensus 478 ~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~--~GhdV~VIlP~Y 525 (977)
T PLN02939 478 TSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQK--KGHLVEIVLPKY 525 (977)
T ss_pred CCCCCEEEEEEcccccccccccHHHHHHHHHHHHHH--cCCeEEEEeCCC
Confidence 4567999999763 33444455689999999 999999999854
No 319
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=38.39 E-value=4.4e+02 Score=27.99 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=28.7
Q ss_pred cEEEEEcCC-CccChHHHHHHHHHHHhCCCCcEEEEEe
Q 044218 14 CHVLALPYP-GRGHVNPMMNICKLLVSRQPDILITFVV 50 (436)
Q Consensus 14 ~~vl~~~~~-~~GH~~p~l~la~~L~~~~~Gh~Vt~~~ 50 (436)
+.|.+.+.. ..|=..-++.|++.|.+ +|++|-++=
T Consensus 3 k~l~I~~T~t~~GKT~vslgL~~~L~~--~G~~Vg~fK 38 (684)
T PRK05632 3 RSIYLAPTGTGVGLTSVSLGLMRALER--KGVKVGFFK 38 (684)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEeC
Confidence 456666554 57999999999999999 999999964
No 320
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=38.24 E-value=62 Score=28.46 Aligned_cols=40 Identities=10% Similarity=-0.088 Sum_probs=36.4
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
+..+|++.+.++-.|-....=++-.|.. .|++|++++.+-
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~--~G~~Vi~LG~~v 126 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSN--NGYEVIDLGVMV 126 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHh--CCCEEEECCCCC
Confidence 5689999999999999999999999999 999999998643
No 321
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=38.10 E-value=75 Score=32.64 Aligned_cols=76 Identities=14% Similarity=0.212 Sum_probs=43.8
Q ss_pred HHHHHHHHhCCCeEEEEEcCCC-CcccccccC--CCcEEeeccc--------hhhhccccCcceeeccCCcc------hH
Q 044218 269 DEIIAGIRNSGVRYLWVTRGDT-SRFKDGHAD--DRGIVVPWCD--------QLRVLCHASIGGFWTHCGLN------ST 331 (436)
Q Consensus 269 ~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~~--~~~~v~~~~p--------q~~ll~~~~~~~~I~hgG~~------s~ 331 (436)
..+++.|.+.|++.|+.+.++. ..+.+. +. .+++++.-.. ...-...-..+++++|.|-| .+
T Consensus 5 ~~l~~~L~~~Gv~~vFgvpG~~~~~l~~~-l~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i 83 (558)
T TIGR00118 5 EAIIESLKDEGVKTVFGYPGGAILPIYDA-LYNDSGIEHILVRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGI 83 (558)
T ss_pred HHHHHHHHHcCCCEEEeCCCcchHHHHHH-hhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHH
Confidence 4567778888888777776653 112111 11 2344332211 11111112344499998855 67
Q ss_pred HHHHhcCCcEeecc
Q 044218 332 IESLYAGVPMLTFP 345 (436)
Q Consensus 332 ~eal~~GvP~l~~P 345 (436)
.+|..-++|+|++.
T Consensus 84 ~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 84 ATAYMDSIPMVVFT 97 (558)
T ss_pred HHHHhcCCCEEEEe
Confidence 79999999999995
No 322
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=37.98 E-value=2.2e+02 Score=26.81 Aligned_cols=42 Identities=7% Similarity=0.132 Sum_probs=35.7
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccc
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWL 55 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~ 55 (436)
....|+|+..++-|=..=+..||..|+. +|++|.++..+.+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~--~g~~V~Li~~D~~r 154 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA--QGKKVLLAAGDTFR 154 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCeEEEEecCccc
Confidence 3456778887899999999999999999 99999999887654
No 323
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=37.78 E-value=63 Score=33.31 Aligned_cols=27 Identities=15% Similarity=0.365 Sum_probs=21.9
Q ss_pred cceeeccCCcc------hHHHHHhcCCcEeecc
Q 044218 319 IGGFWTHCGLN------STIESLYAGVPMLTFP 345 (436)
Q Consensus 319 ~~~~I~hgG~~------s~~eal~~GvP~l~~P 345 (436)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34489998866 5679999999999985
No 324
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=37.49 E-value=34 Score=33.32 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=37.2
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCC
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGS 60 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~ 60 (436)
+.+||++...|+.|= .-.+.+.+.|++ .|++|.++.++.....+..
T Consensus 2 ~~k~IllgiTGSiaa-~~~~~ll~~L~~--~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 2 ENKKILLGVTGGIAA-YKTVELVRELVR--QGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHh--CCCEEEEEECHhHHHHHHH
Confidence 357888888887665 558999999999 9999999999887766543
No 325
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=37.15 E-value=47 Score=31.26 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
+++|.++..|++| .+||..|.+ .||+|++...++
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~--ng~~V~lw~r~~ 34 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLAR--NGHEVRLWGRDE 34 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHh--cCCeeEEEecCH
Confidence 4789999999998 589999999 999999988753
No 326
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=37.08 E-value=1.7e+02 Score=27.68 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=37.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccccc
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLG 56 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~ 56 (436)
+--|+|+..-+.|-..-.-.||..|.+ .|+.|.++..+-|..
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~--~g~~VllaA~DTFRA 180 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQ--QGKSVLLAAGDTFRA 180 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHH--CCCeEEEEecchHHH
Confidence 455677778899999999999999999 999999999887775
No 327
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=37.06 E-value=1.1e+02 Score=30.71 Aligned_cols=43 Identities=9% Similarity=0.183 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecC--CCCCC
Q 044218 28 NPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLP--NTIPS 78 (436)
Q Consensus 28 ~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~--~~l~~ 78 (436)
.-.+.+|+.|.+ .|+++. ++.-..+.+++. |+.+..+. .++|+
T Consensus 11 ~~iv~lAk~L~~--lGfeIi--ATgGTak~L~e~----GI~v~~Vsk~TgfPE 55 (511)
T TIGR00355 11 TGIVEFAQGLVE--RGVELL--STGGTAKLLAEA----GVPVTEVSDYTGFPE 55 (511)
T ss_pred ccHHHHHHHHHH--CCCEEE--EechHHHHHHHC----CCeEEEeecccCCch
Confidence 346789999999 999984 566667777888 88887775 45665
No 328
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=37.06 E-value=2.6e+02 Score=23.69 Aligned_cols=96 Identities=7% Similarity=0.081 Sum_probs=57.9
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEe---cc-ccc--cccCCCCCCCCeeEEecCCCCCCCCCCCCCHH
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVV---TE-EWL--GFIGSQSKPHNIRFRTLPNTIPSEHGRANDFA 87 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~---~~-~~~--~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~ 87 (436)
--|.+++..+.|=..-.+.+|-+... +|++|.++- .. ..- ..+++. ++.+.....++.-.. .+..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~--~g~~v~ivQFlKg~~~~GE~~~l~~~----~~~~~~~g~g~~~~~---~~~~ 76 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALG--HGKKVGVIQFIKGAWPNGERAAFEPH----GVEFQVMGTGFTWET---QNRE 76 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHH--CCCeEEEEEEecCCcccChHHHHHhc----CcEEEECCCCCeecC---CCcH
Confidence 45777888999999999999999999 999997652 22 111 123444 688888776543111 1111
Q ss_pred HHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCc
Q 044218 88 GFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYL 129 (436)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~ 129 (436)
... ......+....+.+.+. ++|+||-|...
T Consensus 77 ~~~----~~~~~~~~~a~~~l~~~-------~~DlvVLDEi~ 107 (173)
T TIGR00708 77 ADT----AIAKAAWQHAKEMLADP-------ELDLVLLDELT 107 (173)
T ss_pred HHH----HHHHHHHHHHHHHHhcC-------CCCEEEehhhH
Confidence 111 12233344444444333 89999999554
No 329
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=37.01 E-value=36 Score=28.93 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=38.1
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCC
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQ 61 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~ 61 (436)
....++|...++.|=..=..++++++.+ .|+.|.|+..+...+.++..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~--~g~~v~f~~~~~L~~~l~~~ 93 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR--KGYSVLFITASDLLDELKQS 93 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEHHHHHHHHHCC
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc--CCcceeEeecCceecccccc
Confidence 4567899999999988889999999999 99999999988777766644
No 330
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=36.81 E-value=48 Score=29.19 Aligned_cols=45 Identities=11% Similarity=0.005 Sum_probs=36.1
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccccccc
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFI 58 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~ 58 (436)
+..-+++...|+.|=..-++.++....+ +|+.|.|++.+...+.+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~--~g~~~~y~s~e~~~~~l 59 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLK--NGEKAMYISLEEREERI 59 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCCCHHHH
Confidence 3455677777899999999999988888 89999999988766543
No 331
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=36.70 E-value=85 Score=27.96 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=35.9
Q ss_pred cEEEEEcC-CCccChHHHHHHHHHHHhCCCCcEEEEEecccccccc
Q 044218 14 CHVLALPY-PGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFI 58 (436)
Q Consensus 14 ~~vl~~~~-~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~ 58 (436)
+-|.|... |+-|=..-.+.||.+|.+ +|-.|+++=.+++....
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~--~G~~V~lIDaDpn~pl~ 45 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAA--RGARVALIDADPNQPLA 45 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHH--CCCeEEEEeCCCCCcHH
Confidence 44555555 788999999999999999 99999999988777643
No 332
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=36.53 E-value=54 Score=27.23 Aligned_cols=34 Identities=15% Similarity=-0.005 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
+.++|+++..|.-| ...++.|.+ .|++|+++.++
T Consensus 12 ~~~~vlVvGGG~va-----~rka~~Ll~--~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIA-----YRKASGLKD--TGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHh--CCCEEEEEcCc
Confidence 45788888877655 678999999 99999999644
No 333
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=36.41 E-value=54 Score=32.78 Aligned_cols=47 Identities=13% Similarity=0.096 Sum_probs=38.6
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCC
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQ 61 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~ 61 (436)
..+||++...|+.+ .+-...|.+.|++ +|++|.++.++....++...
T Consensus 69 ~~k~IllgVtGsIA-ayka~~lvr~L~k--~G~~V~VvmT~sA~~fv~p~ 115 (475)
T PRK13982 69 ASKRVTLIIGGGIA-AYKALDLIRRLKE--RGAHVRCVLTKAAQQFVTPL 115 (475)
T ss_pred CCCEEEEEEccHHH-HHHHHHHHHHHHh--CcCEEEEEECcCHHHHhhHH
Confidence 35888888777665 4488999999999 99999999999887777644
No 334
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=36.38 E-value=1.7e+02 Score=26.92 Aligned_cols=32 Identities=13% Similarity=0.112 Sum_probs=25.6
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
.+|+|+..|..|. .+|..|.+ +||+|+++...
T Consensus 2 ~~V~VIG~G~mG~-----~iA~~la~--~G~~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGR-----GIAYVFAV--SGFQTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHH-----HHHHHHHh--CCCcEEEEeCC
Confidence 5788888887774 47888999 99999998643
No 335
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=36.26 E-value=22 Score=29.68 Aligned_cols=51 Identities=10% Similarity=0.083 Sum_probs=35.2
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccc--cccccCCCCCCCCeeEEecC
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEE--WLGFIGSQSKPHNIRFRTLP 73 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~--~~~~~~~~~~~~~i~~~~l~ 73 (436)
+.++|+++.+|++||. -|.-|++ -|++|++...+. ..+..++. ||...++.
T Consensus 3 ~~k~IAViGyGsQG~a-----~AlNLrD--SG~~V~Vglr~~s~s~~~A~~~----Gf~v~~~~ 55 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHA-----HALNLRD--SGVNVIVGLREGSASWEKAKAD----GFEVMSVA 55 (165)
T ss_dssp CTSEEEEES-SHHHHH-----HHHHHHH--CC-EEEEEE-TTCHHHHHHHHT----T-ECCEHH
T ss_pred CCCEEEEECCChHHHH-----HHHHHHh--CCCCEEEEecCCCcCHHHHHHC----CCeeccHH
Confidence 3578999999999985 5788999 999999977553 44555666 77655543
No 336
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=36.23 E-value=2.8e+02 Score=23.84 Aligned_cols=51 Identities=12% Similarity=0.075 Sum_probs=30.5
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCc--EEEEEecccc-c---cccCCCCCCCCeeEEecC
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDI--LITFVVTEEW-L---GFIGSQSKPHNIRFRTLP 73 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh--~Vt~~~~~~~-~---~~~~~~~~~~~i~~~~l~ 73 (436)
+||+++..+..+-+. +|.+.+.+ .++ +|.++.++.. . +.+++. ++.+..++
T Consensus 1 ~riail~sg~gs~~~---~ll~~~~~--~~l~~~I~~vi~~~~~~~~~~~A~~~----gip~~~~~ 57 (190)
T TIGR00639 1 KRIVVLISGNGSNLQ---AIIDACKE--GKIPASVVLVISNKPDAYGLERAAQA----GIPTFVLS 57 (190)
T ss_pred CeEEEEEcCCChhHH---HHHHHHHc--CCCCceEEEEEECCccchHHHHHHHc----CCCEEEEC
Confidence 578888887665554 56666766 444 7777655532 2 223444 67766553
No 337
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=36.13 E-value=1.2e+02 Score=26.04 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=18.9
Q ss_pred cEEEEEcC-CCcc-ChHHHHHHHHHHHh
Q 044218 14 CHVLALPY-PGRG-HVNPMMNICKLLVS 39 (436)
Q Consensus 14 ~~vl~~~~-~~~G-H~~p~l~la~~L~~ 39 (436)
|+|++..+ |..| -+||...++++|-.
T Consensus 1 ~kvLvTGFePF~~~~~NPs~e~vk~L~~ 28 (207)
T COG2039 1 MKVLVTGFEPFGGEPINPSWEAVKELNG 28 (207)
T ss_pred CeEEEEeccCCCCCCCChHHHHHHhcCc
Confidence 45776666 3333 48999999999977
No 338
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=35.74 E-value=75 Score=28.19 Aligned_cols=38 Identities=11% Similarity=0.139 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcE-EEEEecc
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDIL-ITFVVTE 52 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~-Vt~~~~~ 52 (436)
|+-|+|...|..|-......|.++|++ +|+. +..+..+
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~--~~~K~~v~ii~d 39 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKE--RGTKQSVRIIDD 39 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHh--hcccceEEEech
Confidence 566889999999999999999999999 9975 4444444
No 339
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=35.66 E-value=1.3e+02 Score=31.21 Aligned_cols=79 Identities=9% Similarity=0.083 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCC-CcccccccC-CCcEEeec--------cchhhhccccCcceeeccCCcc------
Q 044218 266 AQMDEIIAGIRNSGVRYLWVTRGDT-SRFKDGHAD-DRGIVVPW--------CDQLRVLCHASIGGFWTHCGLN------ 329 (436)
Q Consensus 266 ~~~~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~~-~~~~v~~~--------~pq~~ll~~~~~~~~I~hgG~~------ 329 (436)
..-..+++.|++.|+..|+.+.++. ..+.+. +. .+++++.- +-...-...-..+++++|.|-|
T Consensus 7 ~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~da-l~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~ 85 (588)
T PRK07525 7 TPSEAFVETLQAHGITHAFGIIGSAFMDASDL-FPPAGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVT 85 (588)
T ss_pred cHHHHHHHHHHHcCCCEEEEeCCCchHHHHHH-HhccCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHH
Confidence 3346688888889988888887753 112221 11 23333321 1111111122344499998855
Q ss_pred hHHHHHhcCCcEeecc
Q 044218 330 STIESLYAGVPMLTFP 345 (436)
Q Consensus 330 s~~eal~~GvP~l~~P 345 (436)
.+.+|...++|+|++.
T Consensus 86 gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 86 AVATAYWAHTPVVLVT 101 (588)
T ss_pred HHHHHhhcCCCEEEEe
Confidence 6678899999999996
No 340
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=35.53 E-value=61 Score=27.02 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=21.4
Q ss_pred cceeeccCCcc------hHHHHHhcCCcEeeccc
Q 044218 319 IGGFWTHCGLN------STIESLYAGVPMLTFPL 346 (436)
Q Consensus 319 ~~~~I~hgG~~------s~~eal~~GvP~l~~P~ 346 (436)
.++++++.|-| .+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 44478887755 56688999999999963
No 341
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=35.22 E-value=1.5e+02 Score=30.39 Aligned_cols=75 Identities=15% Similarity=0.245 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCC-CcccccccC--CCcEEeec--------cch--hhhccccCcceeeccCCcc-----
Q 044218 268 MDEIIAGIRNSGVRYLWVTRGDT-SRFKDGHAD--DRGIVVPW--------CDQ--LRVLCHASIGGFWTHCGLN----- 329 (436)
Q Consensus 268 ~~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~~--~~~~v~~~--------~pq--~~ll~~~~~~~~I~hgG~~----- 329 (436)
...+++.|++.|++.++.+.+.. ..+.+. +. .+++++.- +-. ..+-..+.+ +++|.|-|
T Consensus 11 ~~~l~~~L~~~GV~~vFg~pG~~~~~l~~a-l~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv--~~~t~GpG~~N~~ 87 (557)
T PRK08199 11 GQILVDALRANGVERVFCVPGESYLAVLDA-LHDETDIRVIVCRQEGGAAMMAEAYGKLTGRPGI--CFVTRGPGATNAS 87 (557)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchhHHHHH-hhccCCCcEEEeccHHHHHHHHHHHHHhcCCCEE--EEeCCCccHHHHH
Confidence 45678888888888888776653 111111 11 12333321 111 112233444 99999855
Q ss_pred -hHHHHHhcCCcEeecc
Q 044218 330 -STIESLYAGVPMLTFP 345 (436)
Q Consensus 330 -s~~eal~~GvP~l~~P 345 (436)
.+.+|.+.++|+|++-
T Consensus 88 ~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 88 IGVHTAFQDSTPMILFV 104 (557)
T ss_pred HHHHHHhhcCCCEEEEe
Confidence 6779999999999884
No 342
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=35.15 E-value=96 Score=31.89 Aligned_cols=75 Identities=9% Similarity=0.154 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCC-Cccccccc--CCCcEEeec--------cch--hhhccccCcceeeccCCcc-----
Q 044218 268 MDEIIAGIRNSGVRYLWVTRGDT-SRFKDGHA--DDRGIVVPW--------CDQ--LRVLCHASIGGFWTHCGLN----- 329 (436)
Q Consensus 268 ~~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~--~~~~~v~~~--------~pq--~~ll~~~~~~~~I~hgG~~----- 329 (436)
-..+++.|++.|++.|+...++. ..+.+. + .++++++.- +-. ..+-..+.+ ++.|.|-|
T Consensus 6 ~~~l~~~L~~~Gv~~vFgipG~~~~~l~~~-l~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv--~~~t~GpG~~n~~ 82 (563)
T PRK08527 6 SQMVCEALKEEGVKVVFGYPGGAILNIYDE-IYKQNYFKHILTRHEQAAVHAADGYARASGKVGV--AIVTSGPGFTNAV 82 (563)
T ss_pred HHHHHHHHHHcCCCEEEECCCcchHHHHHH-HhccCCCeEEEeccHHHHHHHHHHHHhhhCCCEE--EEECCCCcHHHHH
Confidence 35577777888887777776643 111111 1 123333321 111 112223444 99998855
Q ss_pred -hHHHHHhcCCcEeecc
Q 044218 330 -STIESLYAGVPMLTFP 345 (436)
Q Consensus 330 -s~~eal~~GvP~l~~P 345 (436)
++.+|..-++|+|++.
T Consensus 83 ~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 83 TGLATAYMDSIPLVLIS 99 (563)
T ss_pred HHHHHHhhcCCCEEEEe
Confidence 6779999999999985
No 343
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=35.08 E-value=1.3e+02 Score=29.72 Aligned_cols=80 Identities=9% Similarity=0.062 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEEcCCCCcccccccC-CCcEEeeccchhhhccccCcceeeccCCcchHHHHHhcCCcEe
Q 044218 264 SSAQMDEIIAGIRNSGVRYLWVTRGDTSRFKDGHAD-DRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPML 342 (436)
Q Consensus 264 ~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~-~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l 342 (436)
.+.....+++.+.++|..++............. .+ +.+.+.++-.-.+++.......+|.|. ..-.-|...|+|.+
T Consensus 319 ~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~-~~~~~~~~~D~~~l~~~i~~~~~dliig~s--~~k~~A~~l~ip~i 395 (432)
T TIGR01285 319 EPDLLAAWATFFTSMGAQIVAAVTTTGSPLLQK-LPVETVVIGDLEDLEDLACAAGADLLITNS--HGRALAQRLALPLV 395 (432)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHh-CCcCcEEeCCHHHHHHHHhhcCCCEEEECc--chHHHHHHcCCCEE
Confidence 445667778888899987766654432112122 23 334333443333455333343387554 34556777899998
Q ss_pred eccc
Q 044218 343 TFPL 346 (436)
Q Consensus 343 ~~P~ 346 (436)
-+.+
T Consensus 396 r~g~ 399 (432)
T TIGR01285 396 RAGF 399 (432)
T ss_pred EecC
Confidence 5555
No 344
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=34.67 E-value=75 Score=29.55 Aligned_cols=41 Identities=20% Similarity=0.119 Sum_probs=34.3
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 11 TSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 11 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
.+|.+|.|..-|+-|=..-...||-.|.+ .|++|.++-.+.
T Consensus 2 ~~~~~iai~~KGGvGKTt~~~nLa~~la~--~g~kVLliD~D~ 42 (295)
T PRK13234 2 SKLRQIAFYGKGGIGKSTTSQNTLAALVE--MGQKILIVGCDP 42 (295)
T ss_pred CcceEEEEECCCCccHHHHHHHHHHHHHH--CCCeEEEEeccc
Confidence 34567777777899999999999999999 999999995543
No 345
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=34.55 E-value=1.3e+02 Score=32.92 Aligned_cols=100 Identities=12% Similarity=0.130 Sum_probs=60.1
Q ss_pred hhccccCcceeecc---CCcchHH-HHHhcCC---cEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHH
Q 044218 312 RVLCHASIGGFWTH---CGLNSTI-ESLYAGV---PMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEIT 384 (436)
Q Consensus 312 ~ll~~~~~~~~I~h---gG~~s~~-eal~~Gv---P~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~ 384 (436)
+++..+++ ++-- -|+|-+. |+++++. -+++++-+. .-|..+. .-|+.+.+ .+.++++
T Consensus 455 AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfa---Gaa~~L~---~~AllVNP--------~D~~~vA 518 (934)
T PLN03064 455 ALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFA---GAAQSLG---AGAILVNP--------WNITEVA 518 (934)
T ss_pred HHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCCC---chHHHhC---CceEEECC--------CCHHHHH
Confidence 46677777 6643 4888555 9999955 223334322 2222221 24778887 6899999
Q ss_pred HHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044218 385 ELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDISR 435 (436)
Q Consensus 385 ~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 435 (436)
++|.+.|+-.. ++-+++.+++.+.++ .-++..=+++|+++|.+
T Consensus 519 ~AI~~AL~M~~---~Er~~r~~~~~~~V~-----~~d~~~Wa~~fl~~L~~ 561 (934)
T PLN03064 519 ASIAQALNMPE---EEREKRHRHNFMHVT-----THTAQEWAETFVSELND 561 (934)
T ss_pred HHHHHHHhCCH---HHHHHHHHHHHhhcc-----cCCHHHHHHHHHHHHHH
Confidence 99999887321 344444445555544 34666667777777653
No 346
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=34.33 E-value=49 Score=31.04 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
||+|+|+..|..|. .+|..|.+ .||+|+++...
T Consensus 1 mmkI~iiG~G~mG~-----~~a~~L~~--~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLGAGSWGT-----ALAIVLAR--NGHDVTLWARD 33 (325)
T ss_pred CCEEEEECCCHHHH-----HHHHHHHh--CCCEEEEEECC
Confidence 47899998887774 57888999 99999998764
No 347
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=34.27 E-value=2.8e+02 Score=24.62 Aligned_cols=145 Identities=8% Similarity=-0.040 Sum_probs=77.2
Q ss_pred CCCeEEecCCCCCCCCCcccChHHHHHHHHHHHhCCCeEEEEEcCCCCcccccccCCCcEEeeccchhhhccccCcceee
Q 044218 244 SFPVLLAQFCTSHWEAFYSVSSAQMDEIIAGIRNSGVRYLWVTRGDTSRFKDGHADDRGIVVPWCDQLRVLCHASIGGFW 323 (436)
Q Consensus 244 ~~~~~~vGpl~~~wGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I 323 (436)
..+++.||. |..+ ..=+..|.+.|..+.++...-.+++....-.+++.+..--.+..-+..+.+ +|
T Consensus 25 ~~~VLVVGG-----G~VA-------~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~L--Vi 90 (223)
T PRK05562 25 KIKVLIIGG-----GKAA-------FIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHL--IV 90 (223)
T ss_pred CCEEEEECC-----CHHH-------HHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcE--EE
Confidence 346899993 3222 222455666888877766553333322101234555432223334556666 88
Q ss_pred ccCCcchHHHHHhc-----CCcEeeccccccchhhHHH-----HhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 324 THCGLNSTIESLYA-----GVPMLTFPLFWDQVPNSKQ-----IVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 324 ~hgG~~s~~eal~~-----GvP~l~~P~~~DQ~~na~~-----~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
.--+--.+++.++. |++..+ .|++..+.. +.+- ++-+.+.. . +....-+..|++.|++++.+
T Consensus 91 aATdD~~vN~~I~~~a~~~~~lvn~----vd~p~~~dFi~PAiv~rg-~l~IaIST-~--G~sP~lar~lR~~ie~~l~~ 162 (223)
T PRK05562 91 IATDDEKLNNKIRKHCDRLYKLYID----CSDYKKGLCIIPYQRSTK-NFVFALNT-K--GGSPKTSVFIGEKVKNFLKK 162 (223)
T ss_pred ECCCCHHHHHHHHHHHHHcCCeEEE----cCCcccCeEEeeeEEecC-CEEEEEEC-C--CcCcHHHHHHHHHHHHHHHH
Confidence 88887777776653 555553 344443332 3322 33334443 1 11223446688888888843
Q ss_pred CccchHHHHHHHHHHHHHHHH
Q 044218 394 NSDERKEMSKRAREVQEICRE 414 (436)
Q Consensus 394 ~~~~~~~~~~~a~~l~~~~~~ 414 (436)
. ..+-+.+.+++..+++
T Consensus 163 ~----~~l~~~l~~~R~~vk~ 179 (223)
T PRK05562 163 Y----DDFIEYVTKIRNKAKK 179 (223)
T ss_pred H----HHHHHHHHHHHHHHHh
Confidence 2 4566666667666664
No 348
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=34.22 E-value=44 Score=33.32 Aligned_cols=43 Identities=23% Similarity=0.300 Sum_probs=35.5
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccccccc
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFI 58 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~ 58 (436)
.-+++...|+.|=..=++.++..+.+ +|..|.|++.++..+.+
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~--~g~kvlYvs~EEs~~qi 137 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAK--NQMKVLYVSGEESLQQI 137 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHh--cCCcEEEEECcCCHHHH
Confidence 45677777899999999999999999 89999999987655443
No 349
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=34.15 E-value=61 Score=29.18 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=20.1
Q ss_pred cChHHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 25 GHVNPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 25 GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
|=-.-+-.|+++|++ .||+|++++|..
T Consensus 17 GLgdv~~~L~kaL~~--~G~~V~Vi~P~y 43 (245)
T PF08323_consen 17 GLGDVVGSLPKALAK--QGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHH--TT-EEEEEEE-T
T ss_pred cHhHHHHHHHHHHHh--cCCeEEEEEccc
Confidence 344456689999999 999999999764
No 350
>PRK12342 hypothetical protein; Provisional
Probab=34.12 E-value=75 Score=28.84 Aligned_cols=30 Identities=10% Similarity=0.063 Sum_probs=23.3
Q ss_pred CeeEEEEcCCc------chHHHHhHhcCCCeEEEcc
Q 044218 119 AVTAIIADTYL------PWVVDVGNRRNIPVASLWT 148 (436)
Q Consensus 119 ~~D~vI~D~~~------~~~~~~A~~~gIP~v~~~~ 148 (436)
++|+|++-..+ --+..+|+.+|+|+++...
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 89999965433 3378899999999999643
No 351
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=33.88 E-value=1.1e+02 Score=29.05 Aligned_cols=100 Identities=12% Similarity=0.113 Sum_probs=59.4
Q ss_pred CcEEEEEcCCCc-----cChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCCCCCCCCCHH
Q 044218 13 LCHVLALPYPGR-----GHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPSEHGRANDFA 87 (436)
Q Consensus 13 ~~~vl~~~~~~~-----GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~ 87 (436)
.+.|+|.|..+. --..-+..|++.|.+ +|++|.++.++...+.+++... . .+... .
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~--~~~~Vvl~g~~~e~e~~~~i~~--~---------~~~~~----~-- 235 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIA--KGYQVVLFGGPDEEERAEEIAK--G---------LPNAV----I-- 235 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHH--CCCEEEEecChHHHHHHHHHHH--h---------cCCcc----c--
Confidence 366777777233 234568899999999 9999999988844444333210 0 00000 0
Q ss_pred HHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcch
Q 044218 88 GFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTM 149 (436)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~ 149 (436)
-.....+.++..-+. ..|++|+. .+....+|..+|.|+|.+...
T Consensus 236 -------l~~k~sL~e~~~li~---------~a~l~I~~--DSg~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 236 -------LAGKTSLEELAALIA---------GADLVIGN--DSGPMHLAAALGTPTIALYGP 279 (334)
T ss_pred -------cCCCCCHHHHHHHHh---------cCCEEEcc--CChHHHHHHHcCCCEEEEECC
Confidence 001112233333332 67888854 255678999999999998653
No 352
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=33.87 E-value=3.5e+02 Score=27.30 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=27.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
|+|+++..|++.| +|++.|++..+|++|..+..+
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~ 34 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSY 34 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECC
Confidence 6899999999888 588888883339998887553
No 353
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=33.60 E-value=72 Score=29.01 Aligned_cols=30 Identities=20% Similarity=0.100 Sum_probs=23.5
Q ss_pred CeeEEEEcCCc------chHHHHhHhcCCCeEEEcc
Q 044218 119 AVTAIIADTYL------PWVVDVGNRRNIPVASLWT 148 (436)
Q Consensus 119 ~~D~vI~D~~~------~~~~~~A~~~gIP~v~~~~ 148 (436)
.||+|++-..+ --+..+|+.+|+|++++..
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 89999965432 3577899999999999654
No 354
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=33.58 E-value=3.3e+02 Score=27.37 Aligned_cols=24 Identities=4% Similarity=0.073 Sum_probs=20.6
Q ss_pred CeeEEEEcCCcchHHHHhHhcCCCeEE
Q 044218 119 AVTAIIADTYLPWVVDVGNRRNIPVAS 145 (436)
Q Consensus 119 ~~D~vI~D~~~~~~~~~A~~~gIP~v~ 145 (436)
+||++|.. .....+|+++|||++-
T Consensus 393 ~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 393 KADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred CCCEEEec---CchhhhhhhcCCCEEE
Confidence 89999987 5566899999999984
No 355
>PRK11269 glyoxylate carboligase; Provisional
Probab=33.53 E-value=1.3e+02 Score=31.07 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=43.7
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCC-Cccccccc-C-CCcEEeeccc--------hhhhccc-cCcceeeccCC------cc
Q 044218 268 MDEIIAGIRNSGVRYLWVTRGDT-SRFKDGHA-D-DRGIVVPWCD--------QLRVLCH-ASIGGFWTHCG------LN 329 (436)
Q Consensus 268 ~~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~-~-~~~~v~~~~p--------q~~ll~~-~~~~~~I~hgG------~~ 329 (436)
-..+++.|++.|++.|+.+.+.. ..+.+. + . ++++++.-.. +..-... -..+++++|.| .+
T Consensus 7 ~~~l~~~L~~~Gv~~vFg~pG~~~~~l~da-l~~~~~i~~v~~rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~ 85 (591)
T PRK11269 7 VDAAVLVLEKEGVTTAFGVPGAAINPFYSA-MRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMIT 85 (591)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcccHHHHHH-HhhcCCCcEEeeCCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHHHHH
Confidence 35677777888887777776643 111111 1 1 1334332211 1111111 22444788877 56
Q ss_pred hHHHHHhcCCcEeecc
Q 044218 330 STIESLYAGVPMLTFP 345 (436)
Q Consensus 330 s~~eal~~GvP~l~~P 345 (436)
.+.+|.+.++|+|++.
T Consensus 86 gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 86 GLYSASADSIPILCIT 101 (591)
T ss_pred HHHHHhhcCCCEEEEe
Confidence 8889999999999985
No 356
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=33.11 E-value=2.8e+02 Score=28.30 Aligned_cols=41 Identities=10% Similarity=0.223 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcch
Q 044218 99 APFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTM 149 (436)
Q Consensus 99 ~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~ 149 (436)
...+..++++++. ++++||+|.. +...|+++|++.+.+.+.
T Consensus 132 ~e~~~~~~~l~~~-------G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 132 EDARSCVNDLRAR-------GIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHHC-------CCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 3456677888776 8999999963 568999999999998764
No 357
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=33.09 E-value=81 Score=30.75 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=26.1
Q ss_pred eccCCcchHHHHHhcCCcEeecccc--ccchhhHHHHhhhhceeeEeec
Q 044218 323 WTHCGLNSTIESLYAGVPMLTFPLF--WDQVPNSKQIVQDWKTGWRVKK 369 (436)
Q Consensus 323 I~hgG~~s~~eal~~GvP~l~~P~~--~DQ~~na~~~~~~lG~G~~~~~ 369 (436)
-|+||.--+-|-=.+|+|+|.+--. .-.-.=|.|+. . ++++..+.
T Consensus 349 C~r~~a~m~keiE~~GiPvv~~~~~~pis~tvGanriv-p-~~~ip~Pl 395 (431)
T TIGR01918 349 CTRCGATMVKEIERAGIPVVHMCTVIPIALTVGANRIV-P-TIAIPHPL 395 (431)
T ss_pred chhHHHHHHHHHHHcCCCEEEEeecccHhhhcCcccee-c-ccCcCCCC
Confidence 4445544445556689999877642 22334466776 4 56655554
No 358
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=33.03 E-value=80 Score=30.76 Aligned_cols=28 Identities=14% Similarity=0.035 Sum_probs=20.3
Q ss_pred CeeEEEEcCCcc-------h---HHHHhHhcCCCeEEE
Q 044218 119 AVTAIIADTYLP-------W---VVDVGNRRNIPVASL 146 (436)
Q Consensus 119 ~~D~vI~D~~~~-------~---~~~~A~~~gIP~v~~ 146 (436)
+||++|+-+-+- | +..+.++++||.++-
T Consensus 76 ~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 76 NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 999999887541 1 222457899999985
No 359
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=33.00 E-value=3.8e+02 Score=24.59 Aligned_cols=42 Identities=10% Similarity=0.165 Sum_probs=35.6
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccc
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWL 55 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~ 55 (436)
...+++|+...+.|=..-+..|+..+.. +|+.|.+++.+.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~--~~~~v~~i~~D~~r 115 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHG--KKKTVGFITTDHSR 115 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEecCCCC
Confidence 3468899988999999988999999988 89999999887553
No 360
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=32.90 E-value=68 Score=29.14 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=33.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
|.|+|..-|+-|-..-...||..|++ +|++|.++-.+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~--~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAK--RGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHH--CCCcEEEEecC
Confidence 56888888899999999999999999 99999988554
No 361
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.87 E-value=4.1e+02 Score=24.75 Aligned_cols=97 Identities=9% Similarity=0.110 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhCCCeEEEEEcCCC-C-cccccccCCCcEEeeccchhhhccccCcceeeccCCcchHHHHHh----cCCc
Q 044218 267 QMDEIIAGIRNSGVRYLWVTRGDT-S-RFKDGHADDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLY----AGVP 340 (436)
Q Consensus 267 ~~~~l~~al~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~----~GvP 340 (436)
....+.+.|.+.+..+++--.... + ..... .++ . ...+...+...+++ +|+=||=||+..+.+ .++|
T Consensus 22 ~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~-~~~-~---~~~~~~~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~P 94 (296)
T PRK04539 22 TAHTLITFLKQHGFTVYLDEVGIKEGCIYTQD-TVG-C---HIVNKTELGQYCDL--VAVLGGDGTFLSVAREIAPRAVP 94 (296)
T ss_pred HHHHHHHHHHHCCCEEEEecccccccchhccc-ccc-c---cccchhhcCcCCCE--EEEECCcHHHHHHHHHhcccCCC
Confidence 355667778888887765321100 0 00000 011 1 11122233345666 999999999999975 3788
Q ss_pred EeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 341 MLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 341 ~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
++.+-.. + +|---+ ++.+++.+++++++++
T Consensus 95 ilGIN~G------------~--lGFL~~---------~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 95 IIGINQG------------H--LGFLTQ---------IPREYMTDKLLPVLEG 124 (296)
T ss_pred EEEEecC------------C--CeEeec---------cCHHHHHHHHHHHHcC
Confidence 7776531 1 232222 3678888888888765
No 362
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=32.82 E-value=84 Score=22.28 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCCcEEEEEecccc
Q 044218 29 PMMNICKLLVSRQPDILITFVVTEEW 54 (436)
Q Consensus 29 p~l~la~~L~~~~~Gh~Vt~~~~~~~ 54 (436)
--+.+|..|.+ .|.+||++.....
T Consensus 10 ig~E~A~~l~~--~g~~vtli~~~~~ 33 (80)
T PF00070_consen 10 IGIELAEALAE--LGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHH--TTSEEEEEESSSS
T ss_pred HHHHHHHHHHH--hCcEEEEEeccch
Confidence 34789999999 9999999887643
No 363
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=32.60 E-value=1.4e+02 Score=30.81 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCcccccccCCCcEEeeccc-h---------hhhccccCcceeeccCCcch-----
Q 044218 266 AQMDEIIAGIRNSGVRYLWVTRGDTSRFKDGHADDRGIVVPWCD-Q---------LRVLCHASIGGFWTHCGLNS----- 330 (436)
Q Consensus 266 ~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~p-q---------~~ll~~~~~~~~I~hgG~~s----- 330 (436)
..-..+++.|++.|+..++.+.......... ...+++++.... + ..+-..+.+ +++|.|-|.
T Consensus 15 ~~a~~i~~~L~~~GV~~vFG~~~~~~~~~~~-~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv--~~~t~GpG~~N~~~ 91 (578)
T PRK06112 15 TVAHAIARALKRHGVEQIFGQSLPSALFLAA-EAIGIRQIAYRTENAGGAMADGYARVSGKVAV--VTAQNGPAATLLVA 91 (578)
T ss_pred CHHHHHHHHHHHCCCCEEeecccchHhHHHH-hhcCCcEEEeccHHHHHHHHHHHHHHhCCCEE--EEeCCCCcHHHHHH
Confidence 3356788888999988888543221001111 112344332221 1 111233444 889999776
Q ss_pred -HHHHHhcCCcEeecc
Q 044218 331 -TIESLYAGVPMLTFP 345 (436)
Q Consensus 331 -~~eal~~GvP~l~~P 345 (436)
+.+|...++|+|++.
T Consensus 92 gl~~A~~~~~Pvl~I~ 107 (578)
T PRK06112 92 PLAEALKASVPIVALV 107 (578)
T ss_pred HHHHHhhcCCCEEEEe
Confidence 889999999999985
No 364
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=32.18 E-value=2e+02 Score=23.81 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=19.0
Q ss_pred eeccCCcc----hHHHHH-hcCCcEeeccc
Q 044218 322 FWTHCGLN----STIESL-YAGVPMLTFPL 346 (436)
Q Consensus 322 ~I~hgG~~----s~~eal-~~GvP~l~~P~ 346 (436)
++.+.|.+ .+.+|. .+++|+|++--
T Consensus 63 ~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~g 92 (157)
T TIGR03845 63 LMQSSGLGNSINALASLNKTYGIPLPILAS 92 (157)
T ss_pred EEeCCcHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 67777754 566777 99999999873
No 365
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=31.80 E-value=3.9e+02 Score=26.16 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=20.3
Q ss_pred CeeEEEEcCCcchHHHHhHhcCCCeEEE
Q 044218 119 AVTAIIADTYLPWVVDVGNRRNIPVASL 146 (436)
Q Consensus 119 ~~D~vI~D~~~~~~~~~A~~~gIP~v~~ 146 (436)
+||++|.... ...+|+++|||++..
T Consensus 356 ~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 356 KADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred CCCEEEECCc---chhhHHhcCCCEEEc
Confidence 8999998844 457899999999853
No 366
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=31.79 E-value=1e+02 Score=24.04 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=33.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 15 ~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
||++...++.|=......+++.|.+ +|.+|.++..+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~--~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAE--KGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEEECCc
Confidence 4788899999999999999999999 999999888775
No 367
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=31.70 E-value=83 Score=29.19 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=34.1
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
|+|+|..-|+-|=..-.+.||..|.+ .|++|.++-.++
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~--~G~rVLlID~Dp 38 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALAR--RGKKVLQIGCDP 38 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHH--CCCeEEEEeccC
Confidence 56999999999999999999999999 999999986553
No 368
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=31.65 E-value=83 Score=20.83 Aligned_cols=46 Identities=20% Similarity=0.378 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 044218 381 DEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDI 433 (436)
Q Consensus 381 ~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 433 (436)
.+|...+..+| ..+..+-..++..+-..+++-|+-.+++++=|.++
T Consensus 2 ~elt~~v~~lL-------~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl 47 (54)
T PF06825_consen 2 QELTAFVQNLL-------QQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADL 47 (54)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---
T ss_pred hHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 57888898998 46889999999999988888888888777777655
No 369
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=31.58 E-value=1.1e+02 Score=28.32 Aligned_cols=74 Identities=18% Similarity=0.381 Sum_probs=49.2
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEEcCCCCcccccccCCCcEEeeccchhhhccccCcceeeccCCcchHHHHHhc--CCc
Q 044218 263 VSSAQMDEIIAGIRNSGVRYLWVTRGDTSRFKDGHADDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYA--GVP 340 (436)
Q Consensus 263 ~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~--GvP 340 (436)
........+.+++.+..+..||..++.. ...++.++++...+-.+|.. +|-..-..+++-+++. |++
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~---------ga~rlL~~ld~~~~~~~pK~--~iGySDiTaL~~~l~~~~g~~ 114 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGY---------GANRLLPYLDYDLIRANPKI--FVGYSDITALHLALYAKTGLV 114 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcC---------CHHHhhhhCCHHHHhhCCeE--EEEecHHHHHHHHHHHhcCce
Confidence 4556688899999999999999988753 22344455555555455655 6666666666666543 677
Q ss_pred Eeecccc
Q 044218 341 MLTFPLF 347 (436)
Q Consensus 341 ~l~~P~~ 347 (436)
.+-=|+.
T Consensus 115 t~hGp~~ 121 (282)
T cd07025 115 TFHGPML 121 (282)
T ss_pred EEECccc
Confidence 6666653
No 370
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=31.47 E-value=1e+02 Score=29.35 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=57.3
Q ss_pred CcEEEEEcCCCcc---C--hHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCCCCCCCCCHH
Q 044218 13 LCHVLALPYPGRG---H--VNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPSEHGRANDFA 87 (436)
Q Consensus 13 ~~~vl~~~~~~~G---H--~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~ 87 (436)
..-|+|.|..+.| + ..-+.+|++.|.+ +|++|.+++++.-.+..++... . .+..... ...++
T Consensus 180 ~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~--~~~~vvl~Gg~~e~~~~~~i~~--~-----~~~~~~~---~~~~l- 246 (348)
T PRK10916 180 RPIIGFCPGAEFGPAKRWPHYHYAELAQQLID--EGYQVVLFGSAKDHEAGNEILA--A-----LNTEQQA---WCRNL- 246 (348)
T ss_pred CCEEEEeCCCCCccccCCCHHHHHHHHHHHHH--CCCeEEEEeCHHhHHHHHHHHH--h-----ccccccc---ceeec-
Confidence 3456666644322 1 3357899999988 8999999887755443332100 0 0000000 00000
Q ss_pred HHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcc
Q 044218 88 GFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWT 148 (436)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~ 148 (436)
. . .-.+.++..-+. +.|++|+. .+..+.+|..+|+|++.++.
T Consensus 247 -----~-g--~~sL~el~ali~---------~a~l~I~n--DTGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 247 -----A-G--ETQLEQAVILIA---------ACKAIVTN--DSGLMHVAAALNRPLVALYG 288 (348)
T ss_pred -----c-C--CCCHHHHHHHHH---------hCCEEEec--CChHHHHHHHhCCCEEEEEC
Confidence 0 0 002334444443 67899854 25577899999999999764
No 371
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=31.01 E-value=90 Score=27.68 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=33.3
Q ss_pred CcEEEEEcCC--CccChHHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 13 LCHVLALPYP--GRGHVNPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 13 ~~~vl~~~~~--~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
|.+|.++++| +-|-..-..+|+..|++ +|+.|.++-.+-
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~--~GkKv~liD~Di 41 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQ--LGKKVVLIDFDI 41 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHH--cCCeEEEEecCc
Confidence 4577777775 78999999999999999 999999987664
No 372
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=30.88 E-value=47 Score=28.18 Aligned_cols=42 Identities=14% Similarity=-0.001 Sum_probs=30.2
Q ss_pred EEEEcCCCccChHH-HHHHHHHHHhCCCCcEEEEEeccccccccC
Q 044218 16 VLALPYPGRGHVNP-MMNICKLLVSRQPDILITFVVTEEWLGFIG 59 (436)
Q Consensus 16 vl~~~~~~~GH~~p-~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~ 59 (436)
|+.--.|+ ||... .+.+.+.|+++ +||+|.++.++...+.++
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~-~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNR-YGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHh-cCCEEEEEECHhHHHHHH
Confidence 44444444 77755 88999999852 699999999987776544
No 373
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=30.69 E-value=1e+02 Score=25.92 Aligned_cols=37 Identities=19% Similarity=0.123 Sum_probs=26.5
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEe
Q 044218 11 TSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVV 50 (436)
Q Consensus 11 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~ 50 (436)
....+|++++.++. .=.=-+.+|+.|.+ +|++|+++.
T Consensus 23 ~~~~~v~il~G~Gn-NGgDgl~~AR~L~~--~G~~V~v~~ 59 (169)
T PF03853_consen 23 PKGPRVLILCGPGN-NGGDGLVAARHLAN--RGYNVTVYL 59 (169)
T ss_dssp CTT-EEEEEE-SSH-HHHHHHHHHHHHHH--TTCEEEEEE
T ss_pred cCCCeEEEEECCCC-ChHHHHHHHHHHHH--CCCeEEEEE
Confidence 45678888888752 22346789999999 999999944
No 374
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=30.61 E-value=1.1e+02 Score=26.30 Aligned_cols=29 Identities=17% Similarity=0.068 Sum_probs=23.6
Q ss_pred CeeEEEEcC--CcchHHHHhHhcCCCeEEEc
Q 044218 119 AVTAIIADT--YLPWVVDVGNRRNIPVASLW 147 (436)
Q Consensus 119 ~~D~vI~D~--~~~~~~~~A~~~gIP~v~~~ 147 (436)
++|+|++=. .++.|..+|..+|+|++...
T Consensus 50 ~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 50 GITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 799998543 44889999999999999963
No 375
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.59 E-value=98 Score=31.69 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=30.3
Q ss_pred CcEEEEEcC-------CCccChHHHH---HHHHHHHhCCCCcEEEEEeccccc
Q 044218 13 LCHVLALPY-------PGRGHVNPMM---NICKLLVSRQPDILITFVVTEEWL 55 (436)
Q Consensus 13 ~~~vl~~~~-------~~~GH~~p~l---~la~~L~~~~~Gh~Vt~~~~~~~~ 55 (436)
++++++.+. |-.||+.+++ .+|+-++. +||+|.|+|...-+
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl--~G~~v~fvtGtDeH 54 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRL--RGYEVFFLTGTDEH 54 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHh--cCCeEEEEeccCCC
Confidence 455555543 2569999888 46888888 99999999976444
No 376
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=30.58 E-value=1.6e+02 Score=29.60 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=37.7
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecC--CCCCC
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLP--NTIPS 78 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~--~~l~~ 78 (436)
+++++.-.- =.-.+.||+.|.+ .|+++. ++.-..+.+++. |+.+..+. .++|+
T Consensus 5 ~~aLISVsD----K~~iv~lAk~L~~--lGfeI~--AT~GTak~L~e~----GI~v~~V~k~TgfpE 59 (513)
T PRK00881 5 KRALISVSD----KTGIVEFAKALVE--LGVEIL--STGGTAKLLAEA----GIPVTEVSDVTGFPE 59 (513)
T ss_pred CEEEEEEeC----cccHHHHHHHHHH--CCCEEE--EcchHHHHHHHC----CCeeEEeecccCCch
Confidence 455554443 4457899999999 999984 566667777888 88877775 45555
No 377
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=30.46 E-value=40 Score=26.08 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCcccccccCCCcEEee-------ccchhhhc---cccCcceeeccCCcchHHHHH
Q 044218 266 AQMDEIIAGIRNSGVRYLWVTRGDTSRFKDGHADDRGIVVP-------WCDQLRVL---CHASIGGFWTHCGLNSTIESL 335 (436)
Q Consensus 266 ~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~-------~~pq~~ll---~~~~~~~~I~hgG~~s~~eal 335 (436)
.....++.++++.|++++.+.......-......+..+..+ |+....|+ ....+ ...|+|+|-..|..
T Consensus 12 eia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~--~~i~pGyg~lse~~ 89 (110)
T PF00289_consen 12 EIAVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGA--DAIHPGYGFLSENA 89 (110)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTE--SEEESTSSTTTTHH
T ss_pred HHHHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcC--cccccccchhHHHH
Confidence 33557899999999998888765421111100234455554 45544433 33344 88899998777764
Q ss_pred h
Q 044218 336 Y 336 (436)
Q Consensus 336 ~ 336 (436)
.
T Consensus 90 ~ 90 (110)
T PF00289_consen 90 E 90 (110)
T ss_dssp H
T ss_pred H
Confidence 3
No 378
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=30.28 E-value=65 Score=31.72 Aligned_cols=38 Identities=16% Similarity=0.085 Sum_probs=28.7
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccc
Q 044218 11 TSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWL 55 (436)
Q Consensus 11 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~ 55 (436)
.+++||+++..|.-| +..|+.|.. .+++||++.+.++.
T Consensus 8 ~~~~~vVIvGgG~aG-----l~~a~~L~~--~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 8 LKKPNVVVLGTGWAG-----AYFVRNLDP--KKYNITVISPRNHM 45 (424)
T ss_pred CCCCeEEEECCCHHH-----HHHHHHhCc--CCCeEEEEcCCCCc
Confidence 356789998887666 456888876 78999999876544
No 379
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=29.95 E-value=65 Score=20.26 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHhccCccchHHHHHHHHH
Q 044218 379 TRDEITELVKRFMDLNSDERKEMSKRARE 407 (436)
Q Consensus 379 t~~~l~~~i~~ll~~~~~~~~~~~~~a~~ 407 (436)
|+++|.+||..+.++. -++++.|++
T Consensus 1 tee~l~~Ai~~v~~g~----~S~r~AA~~ 25 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK----MSIRKAAKK 25 (45)
T ss_dssp -HHHHHHHHHHHHTTS----S-HHHHHHH
T ss_pred CHHHHHHHHHHHHhCC----CCHHHHHHH
Confidence 5788999999887653 456666554
No 380
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=29.95 E-value=62 Score=32.35 Aligned_cols=114 Identities=16% Similarity=0.096 Sum_probs=53.0
Q ss_pred CccChHHHHHHHHHHHhC------CCCcE----EEEEe---ccccccc----cCCCCCCCCeeEEecC----CCCCCCCC
Q 044218 23 GRGHVNPMMNICKLLVSR------QPDIL----ITFVV---TEEWLGF----IGSQSKPHNIRFRTLP----NTIPSEHG 81 (436)
Q Consensus 23 ~~GH~~p~l~la~~L~~~------~~Gh~----Vt~~~---~~~~~~~----~~~~~~~~~i~~~~l~----~~l~~~~~ 81 (436)
+.|.+--.+.++++|.+. ..|-+ |.+++ ++..... +++.....+.....+| .+....+-
T Consensus 295 TGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~gt~~a~IlRvPF~~~~gi~~kwi 374 (550)
T PF00862_consen 295 TGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSGTENARILRVPFGPEKGILRKWI 374 (550)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETTESSEEEEEE-ESESTEEE-S--
T ss_pred CCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCCCCCcEEEEecCCCCcchhhhcc
Confidence 457777888888888540 02443 55544 2211111 1111112245555555 11111121
Q ss_pred CCCCHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCc--chHHHHhHhcCCCeEEEc
Q 044218 82 RANDFAGFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYL--PWVVDVGNRRNIPVASLW 147 (436)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~--~~~~~~A~~~gIP~v~~~ 147 (436)
...++..+++.+.... ...+.+++. . .||+|+..-.. ..|..+++++|||...+.
T Consensus 375 srf~lWPyLe~fa~d~---~~~i~~e~~------~--~PdlI~GnYsDgnlvA~LLs~~lgv~~~~ia 431 (550)
T PF00862_consen 375 SRFDLWPYLEEFADDA---EREILAELQ------G--KPDLIIGNYSDGNLVASLLSRKLGVTQCFIA 431 (550)
T ss_dssp -GGG-GGGHHHHHHHH---HHHHHHHHT------S----SEEEEEHHHHHHHHHHHHHHHT-EEEEE-
T ss_pred chhhchhhHHHHHHHH---HHHHHHHhC------C--CCcEEEeccCcchHHHHHHHhhcCCceehhh
Confidence 2233455555554432 223333331 1 89999976322 568889999999998863
No 381
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=29.90 E-value=1.8e+02 Score=21.09 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=30.1
Q ss_pred cCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044218 378 VTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDISR 435 (436)
Q Consensus 378 ~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 435 (436)
.+++.+.+.++.++++ .+.+..+.+.+.+. +|-+..+.+.++.+.+.+
T Consensus 3 p~~~~i~~i~~~~~~~------~~~~~~~~~~~l~~----~G~s~~~Il~~l~~~l~~ 50 (89)
T PF08542_consen 3 PPPEVIEEILESCLNG------DFKEARKKLYELLV----EGYSASDILKQLHEVLVE 50 (89)
T ss_dssp --HHHHHHHHHHHHHT------CHHHHHHHHHHHHH----TT--HHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC------CHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHH
Confidence 4677888777777653 56665556666655 367888888888877643
No 382
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=29.71 E-value=1.8e+02 Score=25.05 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=19.9
Q ss_pred cEEEEEcCCCcc--ChHHHHHHHHHHHh
Q 044218 14 CHVLALPYPGRG--HVNPMMNICKLLVS 39 (436)
Q Consensus 14 ~~vl~~~~~~~G--H~~p~l~la~~L~~ 39 (436)
|+|++..++-.+ -.||...++++|.+
T Consensus 1 ~~vLvTGF~PF~~~~~NpS~~~v~~L~~ 28 (194)
T cd00501 1 KKVLVTGFGPFGGEPVNPSWEAVKELPK 28 (194)
T ss_pred CEEEEEecCCCCCCCCChHHHHHHhccc
Confidence 568777775433 47999999999976
No 383
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=29.62 E-value=4.2e+02 Score=25.02 Aligned_cols=34 Identities=6% Similarity=-0.087 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
...+|+++..|..|. .+|..|.. .||+|+++-..
T Consensus 6 ~i~~VaVIGaG~MG~-----giA~~~a~--aG~~V~l~D~~ 39 (321)
T PRK07066 6 DIKTFAAIGSGVIGS-----GWVARALA--HGLDVVAWDPA 39 (321)
T ss_pred CCCEEEEECcCHHHH-----HHHHHHHh--CCCeEEEEeCC
Confidence 357899998887774 68888989 99999998765
No 384
>PLN02572 UDP-sulfoquinovose synthase
Probab=29.54 E-value=1.1e+02 Score=30.46 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=30.4
Q ss_pred CCCCCCCCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEe
Q 044218 4 HPAQVKPTSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVV 50 (436)
Q Consensus 4 ~~~~~~~~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~ 50 (436)
+|.+.+.-++++|++. |+.|.+-. .|+++|.+ +||+|+.+.
T Consensus 38 ~~~~~~~~~~k~VLVT--GatGfIGs--~Lv~~L~~--~G~~V~~~d 78 (442)
T PLN02572 38 APGSSSSSKKKKVMVI--GGDGYCGW--ATALHLSK--RGYEVAIVD 78 (442)
T ss_pred CCCCCccccCCEEEEE--CCCcHHHH--HHHHHHHH--CCCeEEEEe
Confidence 5666666677887665 66666654 56799999 999999875
No 385
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.43 E-value=1.5e+02 Score=30.66 Aligned_cols=77 Identities=12% Similarity=0.162 Sum_probs=43.7
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCC-Cccccccc--CCCcEEeeccc--------hhhhccccCcceeeccCCcc------h
Q 044218 268 MDEIIAGIRNSGVRYLWVTRGDT-SRFKDGHA--DDRGIVVPWCD--------QLRVLCHASIGGFWTHCGLN------S 330 (436)
Q Consensus 268 ~~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~--~~~~~v~~~~p--------q~~ll~~~~~~~~I~hgG~~------s 330 (436)
-..+++.|++.|++.|+.+.++. ..+.+. + .++++++.-.. ...-...-..++++.|.|-| +
T Consensus 7 ~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~a-l~~~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~l~g 85 (572)
T PRK08979 7 ASMIVRSLIDEGVKHIFGYPGGSVLDIYDA-LHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTSGPGATNTITG 85 (572)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcchHHHHHH-HhhcCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHHHHH
Confidence 34577777888888777776653 111111 1 12344332211 11111112344489998855 6
Q ss_pred HHHHHhcCCcEeecc
Q 044218 331 TIESLYAGVPMLTFP 345 (436)
Q Consensus 331 ~~eal~~GvP~l~~P 345 (436)
+.+|...++|+|++.
T Consensus 86 ia~A~~~~~Pvl~i~ 100 (572)
T PRK08979 86 IATAYMDSIPMVVLS 100 (572)
T ss_pred HHHHhhcCCCEEEEe
Confidence 779999999999985
No 386
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=29.17 E-value=4.8e+02 Score=25.97 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=20.4
Q ss_pred CeeEEEEcCCcchHHHHhHhcCCCeEEE
Q 044218 119 AVTAIIADTYLPWVVDVGNRRNIPVASL 146 (436)
Q Consensus 119 ~~D~vI~D~~~~~~~~~A~~~gIP~v~~ 146 (436)
+||++|.. .....+|+++|||++.+
T Consensus 395 ~pDl~ig~---~~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 395 KADLLIAG---GKERYTALKLGIPFCDI 419 (456)
T ss_pred CCCEEEEc---cchHHHHHhcCCCEEEc
Confidence 89999976 33567889999999874
No 387
>PRK07586 hypothetical protein; Validated
Probab=29.16 E-value=98 Score=31.38 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=42.5
Q ss_pred HHHHHHHHhCCCeEEEEEcCCCC-cccccccC--CCcEEeeccc-hh---------hhccccCcceeeccCCcchH----
Q 044218 269 DEIIAGIRNSGVRYLWVTRGDTS-RFKDGHAD--DRGIVVPWCD-QL---------RVLCHASIGGFWTHCGLNST---- 331 (436)
Q Consensus 269 ~~l~~al~~~~~~~i~~~~~~~~-~~~~~~~~--~~~~v~~~~p-q~---------~ll~~~~~~~~I~hgG~~s~---- 331 (436)
..+++.|++.|++.|+-+.++.. .+.+. +. ++++++.-.. +. .+-..+.+ ++.|.|-|.+
T Consensus 5 ~~l~~~L~~~Gv~~vFG~pG~~~~~l~da-l~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv--~~~t~GPG~~N~~~ 81 (514)
T PRK07586 5 ESLVRTLVDGGVDVCFANPGTSEMHFVAA-LDRVPGMRCVLGLFEGVATGAADGYARMAGKPAA--TLLHLGPGLANGLA 81 (514)
T ss_pred HHHHHHHHHCCCCEEEECCCCchHHHHHH-HhccCCCeEEEeccHHHHHHHHHHHHHHHCCCEE--EEecccHHHHHHHH
Confidence 45777888888888877766531 12111 11 2344432211 11 12223444 8888886644
Q ss_pred --HHHHhcCCcEeecc
Q 044218 332 --IESLYAGVPMLTFP 345 (436)
Q Consensus 332 --~eal~~GvP~l~~P 345 (436)
.+|...++|+|++.
T Consensus 82 gl~~A~~~~~Pvl~i~ 97 (514)
T PRK07586 82 NLHNARRARTPIVNIV 97 (514)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 48999999999986
No 388
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.14 E-value=2.9e+02 Score=25.72 Aligned_cols=95 Identities=13% Similarity=0.120 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCcccccccCCCcEEeeccchhhhccccCcceeeccCCcchHHHHHhc----CCcE
Q 044218 266 AQMDEIIAGIRNSGVRYLWVTRGDTSRFKDGHADDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYA----GVPM 341 (436)
Q Consensus 266 ~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~----GvP~ 341 (436)
+....+.+.|++.+..+.+..... ..+ +.+- ..+.+...+-..+++ +|+=||-||++++++. ++|+
T Consensus 20 e~~~~i~~~L~~~giev~v~~~~~-~~~-----~~~~--~~~~~~~~~~~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pv 89 (295)
T PRK01231 20 ETLRRLKDFLLDRGLEVILDEETA-EVL-----PGHG--LQTVSRKLLGEVCDL--VIVVGGDGSLLGAARALARHNVPV 89 (295)
T ss_pred HHHHHHHHHHHHCCCEEEEecchh-hhc-----Cccc--ccccchhhcccCCCE--EEEEeCcHHHHHHHHHhcCCCCCE
Confidence 345566777777787765532111 001 1110 011121222234566 9999999999999763 6787
Q ss_pred eeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 342 LTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 342 l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
+.+... + +|-.-. ++.+++.++|.+++++
T Consensus 90 lgin~G------------~--lGFl~~---------~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 90 LGINRG------------R--LGFLTD---------IRPDELEFKLAEVLDG 118 (295)
T ss_pred EEEeCC------------c--cccccc---------CCHHHHHHHHHHHHcC
Confidence 776641 1 221111 4788899999888865
No 389
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=29.06 E-value=57 Score=32.52 Aligned_cols=33 Identities=12% Similarity=0.023 Sum_probs=26.9
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
|||+++..|--| |+-|.+|++ +||+||++=...
T Consensus 1 ~rVai~GaG~Ag-----L~~a~~La~--~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLAG-----LAAAYELAD--AGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHHH-----HHHHHHHHh--CCCceEEEeccC
Confidence 678888777655 788999999 999999986543
No 390
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.99 E-value=1.1e+02 Score=31.67 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=43.5
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCC-Cccccccc-C-CCcEEeeccc--------hhhhccccCcceeeccCCcc------h
Q 044218 268 MDEIIAGIRNSGVRYLWVTRGDT-SRFKDGHA-D-DRGIVVPWCD--------QLRVLCHASIGGFWTHCGLN------S 330 (436)
Q Consensus 268 ~~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~-~-~~~~v~~~~p--------q~~ll~~~~~~~~I~hgG~~------s 330 (436)
-..+++.|++.|++.|+...++. ..+.+. + . ++++++.-.. ...-...-..+++++|.|-| +
T Consensus 7 a~~l~~~L~~~GV~~vFg~pG~~~~~l~~a-l~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~ 85 (574)
T PRK06882 7 AEMVVQSLRDEGVEYVFGYPGGSVLDIYDA-IHTLGGIEHVLVRHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITG 85 (574)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchHHHHHH-HhhcCCCeEEEeccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHHHH
Confidence 35677777888887777766653 111111 1 1 2344332211 11111112344489998855 5
Q ss_pred HHHHHhcCCcEeecc
Q 044218 331 TIESLYAGVPMLTFP 345 (436)
Q Consensus 331 ~~eal~~GvP~l~~P 345 (436)
+.+|...++|+|++.
T Consensus 86 i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 86 IATAYTDSVPLVILS 100 (574)
T ss_pred HHHHhhcCCCEEEEe
Confidence 779999999999985
No 391
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=28.98 E-value=1.2e+02 Score=22.45 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=35.9
Q ss_pred ccCccCHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044218 374 SERLVTRDEITELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDIS 434 (436)
Q Consensus 374 ~~~~~t~~~l~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 434 (436)
+.+.++.+++...+..-|.+ .+... ..+.+.++. .+.+|+...++++|++.+.
T Consensus 22 ~~g~i~~~ELk~ll~~elg~------~ls~~-~~v~~mi~~-~D~d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 22 GKESLTASEFQELLTQQLPH------LLKDV-EGLEEKMKN-LDVNQDSKLSFEEFWELIG 74 (89)
T ss_pred CCCeECHHHHHHHHHHHhhh------hccCH-HHHHHHHHH-hCCCCCCCCcHHHHHHHHH
Confidence 34678999999988774432 22221 556666654 5677888888999987764
No 392
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=28.91 E-value=1e+02 Score=31.66 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=43.2
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCCC-ccccccc-CCCcEEeeccc--------h--hhhccccCcceeeccCCcc------
Q 044218 268 MDEIIAGIRNSGVRYLWVTRGDTS-RFKDGHA-DDRGIVVPWCD--------Q--LRVLCHASIGGFWTHCGLN------ 329 (436)
Q Consensus 268 ~~~l~~al~~~~~~~i~~~~~~~~-~~~~~~~-~~~~~v~~~~p--------q--~~ll~~~~~~~~I~hgG~~------ 329 (436)
-..+++.|++.|++.++...++.. .+.+. + ..+++++.-.. . ..+-..+.+ +++|.|-|
T Consensus 11 ~~~l~~~L~~~Gv~~vFgipG~~~~~l~~a-l~~~~i~~v~~~hE~~A~~~Adgyar~tg~~~v--~~~t~GpG~~n~~~ 87 (561)
T PRK06048 11 ARAIIKCLEKEGVEVIFGYPGGAIIPVYDE-LYDSDLRHILVRHEQAAAHAADGYARATGKVGV--CVATSGPGATNLVT 87 (561)
T ss_pred HHHHHHHHHHcCCCEEEECCCcchHHHHHH-HhhCCCeEEEeccHHHHHHHHHHHHHHhCCCeE--EEECCCCcHHHHHH
Confidence 456777777788877777666531 11111 1 12233321111 1 112233444 89998855
Q ss_pred hHHHHHhcCCcEeecc
Q 044218 330 STIESLYAGVPMLTFP 345 (436)
Q Consensus 330 s~~eal~~GvP~l~~P 345 (436)
.+.+|...++|+|++.
T Consensus 88 gl~~A~~~~~Pvl~i~ 103 (561)
T PRK06048 88 GIATAYMDSVPIVALT 103 (561)
T ss_pred HHHHHhhcCCCEEEEe
Confidence 6779999999999985
No 393
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=28.88 E-value=1.7e+02 Score=26.60 Aligned_cols=44 Identities=9% Similarity=0.022 Sum_probs=36.6
Q ss_pred CCcEEEEEcC-CCccChHHHHHHHHHHHhCCCCcEEEEEeccccccc
Q 044218 12 SLCHVLALPY-PGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGF 57 (436)
Q Consensus 12 ~~~~vl~~~~-~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~ 57 (436)
+..+-.|+.. |+-|-..-.-.||-.|.+ -++.|.++++++.+..
T Consensus 17 ~slKwifVGGKGGVGKTTcs~sLAvqla~--~r~~vLiISTDPAHNl 61 (323)
T KOG2825|consen 17 TSLKWIFVGGKGGVGKTTCSCSLAVQLAK--VRESVLIISTDPAHNL 61 (323)
T ss_pred ceeeEEEEcCcCCcCccchhhHHHHHHhc--cCCceEEeecCcccch
Confidence 4556666665 688999999999999999 9999999999887653
No 394
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=28.64 E-value=3.2e+02 Score=22.22 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=31.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 16 VLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 16 vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
|++...++.|=...+..++..+.+ +|++|.++..+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~--~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRA--RGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEEEeCC
Confidence 677888899999999999999999 999999987653
No 395
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=28.59 E-value=3.9e+02 Score=23.21 Aligned_cols=149 Identities=9% Similarity=0.021 Sum_probs=75.3
Q ss_pred CCCeEEecCCCCCCCCCcccChHHHHHHHHHHHhCCCeEEEEEcCCCCcccccccCCCcEEeeccchhhhccccCcceee
Q 044218 244 SFPVLLAQFCTSHWEAFYSVSSAQMDEIIAGIRNSGVRYLWVTRGDTSRFKDGHADDRGIVVPWCDQLRVLCHASIGGFW 323 (436)
Q Consensus 244 ~~~~~~vGpl~~~wGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I 323 (436)
+.+++.||. |..+ ..-+..|.+.|..+.++.....+++....-..++.+..--.+...+..+++ +|
T Consensus 9 gk~vlVvGg-----G~va-------~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~l--Vi 74 (205)
T TIGR01470 9 GRAVLVVGG-----GDVA-------LRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFL--VI 74 (205)
T ss_pred CCeEEEECc-----CHHH-------HHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEE--EE
Confidence 457899983 3222 233566777888776654432222222100235555432223445666777 88
Q ss_pred ccCCcchHHHHH-----hcCCcEeec--cccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhccCcc
Q 044218 324 THCGLNSTIESL-----YAGVPMLTF--PLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDLNSD 396 (436)
Q Consensus 324 ~hgG~~s~~eal-----~~GvP~l~~--P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~ 396 (436)
..-|...+++.+ ..|+|+-++ |-..| +..-..+.+- ++-+.+.. . +..-.-+..|++.|++++.++.
T Consensus 75 ~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g-~l~iaisT-~--G~sP~la~~lr~~ie~~l~~~~- 148 (205)
T TIGR01470 75 AATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRS-PVVVAISS-G--GAAPVLARLLRERIETLLPPSL- 148 (205)
T ss_pred ECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcC-CEEEEEEC-C--CCCcHHHHHHHHHHHHhcchhH-
Confidence 888877555443 457777332 22222 2222223322 23334443 1 1122345678888888875322
Q ss_pred chHHHHHHHHHHHHHHHH
Q 044218 397 ERKEMSKRAREVQEICRE 414 (436)
Q Consensus 397 ~~~~~~~~a~~l~~~~~~ 414 (436)
..+-+...++++.+++
T Consensus 149 --~~~~~~~~~~R~~~k~ 164 (205)
T TIGR01470 149 --GDLATLAATWRDAVKK 164 (205)
T ss_pred --HHHHHHHHHHHHHHHh
Confidence 3455555566666554
No 396
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.36 E-value=2.5e+02 Score=23.52 Aligned_cols=90 Identities=21% Similarity=0.205 Sum_probs=56.9
Q ss_pred cccCcceeeccCC---cchHHHHHhcCCcEeeccccc-cchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHH
Q 044218 315 CHASIGGFWTHCG---LNSTIESLYAGVPMLTFPLFW-DQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRF 390 (436)
Q Consensus 315 ~~~~~~~~I~hgG---~~s~~eal~~GvP~l~~P~~~-DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~l 390 (436)
.||++.+-+--.| .-|+.|.-.+|.=.+.==-+. =+..|+++.++- |.=-.+-- +..|.++|.++..+=
T Consensus 71 aHPdLAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~~rF-gfPfI~aV------kg~~k~~Il~a~~~R 143 (176)
T COG3195 71 AHPDLAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYVERF-GFPFIIAV------KGNTKDTILAAFERR 143 (176)
T ss_pred hChhhHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHHHhc-CCceEEee------cCCCHHHHHHHHHHH
Confidence 5666633222222 457778888887654322111 266799999844 77655554 225899999999887
Q ss_pred hccCccchHHHHHHHHHHHHHHH
Q 044218 391 MDLNSDERKEMSKRAREVQEICR 413 (436)
Q Consensus 391 l~~~~~~~~~~~~~a~~l~~~~~ 413 (436)
|+|.+. .+++..+.++.+..+
T Consensus 144 l~n~~e--~E~~tAl~eI~rIA~ 164 (176)
T COG3195 144 LDNDRE--QEFATALAEIERIAL 164 (176)
T ss_pred hcccHH--HHHHHHHHHHHHHHH
Confidence 777655 677777777665544
No 397
>PRK05858 hypothetical protein; Provisional
Probab=28.22 E-value=1.8e+02 Score=29.76 Aligned_cols=75 Identities=9% Similarity=0.179 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCCeEEEEEcCCC-CcccccccCCCcEEeec--------cchh--hhccccCcceeeccCCcc------hH
Q 044218 269 DEIIAGIRNSGVRYLWVTRGDT-SRFKDGHADDRGIVVPW--------CDQL--RVLCHASIGGFWTHCGLN------ST 331 (436)
Q Consensus 269 ~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~~~~~~v~~~--------~pq~--~ll~~~~~~~~I~hgG~~------s~ 331 (436)
..+++.|++.|++.++...+.. ..+.+.....+++++.- +-.. .+-..+.+ ++.|.|-| .+
T Consensus 9 ~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~i~~i~~rhE~~A~~~AdGyar~tg~~gv--~~~t~GpG~~n~~~~i 86 (542)
T PRK05858 9 RLAARRLKAHGVDTMFTLSGGHLFPLYDGAREEGIRLIDVRHEQTAAFAAEAWAKLTRVPGV--AVLTAGPGVTNGMSAM 86 (542)
T ss_pred HHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCCEEeeccHHHHHHHHHHHHHhcCCCeE--EEEcCCchHHHHHHHH
Confidence 4566777777777777666542 11111100112332211 1111 11123444 88888844 77
Q ss_pred HHHHhcCCcEeecc
Q 044218 332 IESLYAGVPMLTFP 345 (436)
Q Consensus 332 ~eal~~GvP~l~~P 345 (436)
.+|...++|+|++.
T Consensus 87 ~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 87 AAAQFNQSPLVVLG 100 (542)
T ss_pred HHHHhcCCCEEEEe
Confidence 79999999999986
No 398
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=28.21 E-value=95 Score=28.20 Aligned_cols=37 Identities=8% Similarity=0.013 Sum_probs=32.3
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
|+|++..-|+-|=..-++.||..|++ +|++|.++=-+
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~--~g~rVLliD~D 37 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAK--LGKRVLQIGCD 37 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHh--CCCeEEEEecC
Confidence 56888877899999999999999999 99999998544
No 399
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=28.20 E-value=4.4e+02 Score=24.39 Aligned_cols=109 Identities=12% Similarity=0.144 Sum_probs=0.0
Q ss_pred CCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEe-ccccccccCCCCCCCCeeEEecCCCCCCCCCCCCCHHH
Q 044218 10 PTSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVV-TEEWLGFIGSQSKPHNIRFRTLPNTIPSEHGRANDFAG 88 (436)
Q Consensus 10 ~~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~-~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~~ 88 (436)
..+++||+++.++....+...+.-.+.=.- ...=+.+++ .+.....+++. |+.+..++......
T Consensus 86 ~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~--~~~i~~visn~~~~~~lA~~~----gIp~~~~~~~~~~~--------- 150 (286)
T PRK13011 86 PAARPKVLIMVSKFDHCLNDLLYRWRIGEL--PMDIVGVVSNHPDLEPLAAWH----GIPFHHFPITPDTK--------- 150 (286)
T ss_pred cccCceEEEEEcCCcccHHHHHHHHHcCCC--CcEEEEEEECCccHHHHHHHh----CCCEEEeCCCcCch---------
Q ss_pred HHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCc-chHHHHhHhcCCCeEEEcch
Q 044218 89 FLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYL-PWVVDVGNRRNIPVASLWTM 149 (436)
Q Consensus 89 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~-~~~~~~A~~~gIP~v~~~~~ 149 (436)
......+.+.+++. ++|++|.-.+. .-...+-+.+.-..+=++++
T Consensus 151 ------~~~~~~~~~~l~~~----------~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK13011 151 ------PQQEAQVLDVVEES----------GAELVVLARYMQVLSPELCRKLAGRAINIHHS 196 (286)
T ss_pred ------hhhHHHHHHHHHHh----------CcCEEEEeChhhhCCHHHHhhccCCeEEeccc
No 400
>PRK04946 hypothetical protein; Provisional
Probab=28.07 E-value=21 Score=30.49 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCCCcccccccCCCcEEeeccchhh-hccccCcceeeccCCcchHH
Q 044218 268 MDEIIAGIRNSGVRYLWVTRGDTSRFKDGHADDRGIVVPWCDQLR-VLCHASIGGFWTHCGLNSTI 332 (436)
Q Consensus 268 ~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~pq~~-ll~~~~~~~~I~hgG~~s~~ 332 (436)
+...+..+...+.+-+.++.+...+.... .|..|+.|.. +++.++. --.|||.|.++
T Consensus 112 L~~fl~~a~~~g~r~v~IIHGkG~gvLk~------~V~~wL~q~~~V~af~~A--~~~~GG~GA~~ 169 (181)
T PRK04946 112 LGALIAACRKEHVFCACVMHGHGKHILKQ------QTPLWLAQHPDVMAFHQA--PKEWGGDAALL 169 (181)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCHhHHHH------HHHHHHcCCchhheeecc--CcccCCceEEE
Confidence 44556566667776666665543333222 2357877644 7766666 67899998654
No 401
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=28.03 E-value=99 Score=28.00 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=33.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
|.+|+|+.-|+-|=..-+..||..|++ +|++|.++=.+
T Consensus 1 m~~iav~~KGGvGKTT~~~nLA~~La~--~G~kVlliD~D 38 (270)
T cd02040 1 MRQIAIYGKGGIGKSTTTQNLSAALAE--MGKKVMIVGCD 38 (270)
T ss_pred CcEEEEEeCCcCCHHHHHHHHHHHHHh--CCCeEEEEEcC
Confidence 456888877899999999999999999 99999998654
No 402
>PRK07524 hypothetical protein; Provisional
Probab=27.89 E-value=1.5e+02 Score=30.17 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCCeEEEEEcCCC-CcccccccC-CCcEEeec--------cch--hhhccccCcceeeccCCcc------h
Q 044218 269 DEIIAGIRNSGVRYLWVTRGDT-SRFKDGHAD-DRGIVVPW--------CDQ--LRVLCHASIGGFWTHCGLN------S 330 (436)
Q Consensus 269 ~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~~-~~~~v~~~--------~pq--~~ll~~~~~~~~I~hgG~~------s 330 (436)
..+++.|++.|+..|+.+.++. ..+.+. +. .+++++.- +-. ..+-..+.+ ++.|.|-| +
T Consensus 6 ~~l~~~L~~~Gv~~vFg~pG~~~~~~~da-l~~~~i~~i~~~hE~~A~~mAdgyar~tg~~gv--~~~t~GpG~~n~~~g 82 (535)
T PRK07524 6 EALVRLLEAYGVETVFGIPGVHTVELYRG-LAGSGIRHVTPRHEQGAGFMADGYARVSGKPGV--CFIITGPGMTNIATA 82 (535)
T ss_pred HHHHHHHHHcCCCEEEeCCCcchHHHHHH-HhhcCCcEEEeccHHHHHHHHHHHHHHhCCCeE--EEECCCccHHHHHHH
Confidence 4566777777777777666542 111111 11 23333211 111 111122344 88888855 6
Q ss_pred HHHHHhcCCcEeecc
Q 044218 331 TIESLYAGVPMLTFP 345 (436)
Q Consensus 331 ~~eal~~GvP~l~~P 345 (436)
+.+|...++|+|++-
T Consensus 83 i~~A~~~~~Pvl~i~ 97 (535)
T PRK07524 83 MGQAYADSIPMLVIS 97 (535)
T ss_pred HHHHHhcCCCEEEEe
Confidence 779999999999884
No 403
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=27.69 E-value=1.2e+02 Score=31.34 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=21.9
Q ss_pred cceeeccCCcc------hHHHHHhcCCcEeecc
Q 044218 319 IGGFWTHCGLN------STIESLYAGVPMLTFP 345 (436)
Q Consensus 319 ~~~~I~hgG~~------s~~eal~~GvP~l~~P 345 (436)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 64 ~gv~~~t~GPG~~n~~~~i~~A~~~~~Pvl~I~ 96 (575)
T TIGR02720 64 IGVCFGSAGPGATHLLNGLYDAKEDHVPVLALV 96 (575)
T ss_pred ceEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 33499998855 6779999999999995
No 404
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=27.68 E-value=1.2e+02 Score=31.15 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCC-Cccccccc-C-CCcEEeeccc-hhhhc-------cccCcceeeccCCcc------h
Q 044218 268 MDEIIAGIRNSGVRYLWVTRGDT-SRFKDGHA-D-DRGIVVPWCD-QLRVL-------CHASIGGFWTHCGLN------S 330 (436)
Q Consensus 268 ~~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~-~-~~~~v~~~~p-q~~ll-------~~~~~~~~I~hgG~~------s 330 (436)
-..+++.|++.|++.|+...++. ..+.+. + . ++++++.-.. +...+ ..-..+++++|.|-| +
T Consensus 13 ~~~i~~~L~~~Gv~~vFgipG~~~~~l~da-l~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~g 91 (566)
T PRK07282 13 SDLVLETLRDLGVDTIFGYPGGAVLPLYDA-IYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAVVTSGPGATNAITG 91 (566)
T ss_pred HHHHHHHHHHcCCCEEEecCCcchHHHHHH-HhhcCCceEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHH
Confidence 45677778888888777776653 112111 1 1 2344432211 11111 111234489998855 5
Q ss_pred HHHHHhcCCcEeecc
Q 044218 331 TIESLYAGVPMLTFP 345 (436)
Q Consensus 331 ~~eal~~GvP~l~~P 345 (436)
+.+|..-++|+|++.
T Consensus 92 la~A~~~~~Pvl~i~ 106 (566)
T PRK07282 92 IADAMSDSVPLLVFT 106 (566)
T ss_pred HHHHhhcCCCEEEEe
Confidence 679999999999995
No 405
>PLN02735 carbamoyl-phosphate synthase
Probab=27.64 E-value=5.7e+02 Score=28.99 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=32.6
Q ss_pred CCCcEEEEEcCCC--ccCh----HHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 11 TSLCHVLALPYPG--RGHV----NPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 11 ~~~~~vl~~~~~~--~GH~----~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
...++|+++..|. .|+. +....++++|++ .|++|..+.+..
T Consensus 21 ~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke--~G~~Vi~vd~np 67 (1102)
T PLN02735 21 TDLKKIMILGAGPIVIGQACEFDYSGTQACKALKE--EGYEVVLINSNP 67 (1102)
T ss_pred cCCCEEEEECCCccccccceeecchHHHHHHHHHH--cCCEEEEEeCCc
Confidence 3468999999885 4644 457899999999 999999987654
No 406
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=27.60 E-value=77 Score=24.78 Aligned_cols=33 Identities=6% Similarity=0.156 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeccccccccCCC
Q 044218 27 VNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQ 61 (436)
Q Consensus 27 ~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~ 61 (436)
+.|++.|.-.+.- +||+++++-|..+.+.+...
T Consensus 9 Vk~L~eIll~Fil--rGHKT~vyLP~yY~~~~~~~ 41 (122)
T PF14626_consen 9 VKALVEILLHFIL--RGHKTVVYLPKYYKNYVDDG 41 (122)
T ss_pred HHHHHHHHHHHHh--ccCeeEEEChHHHhcccccc
Confidence 5688899999999 99999999999888766543
No 407
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=27.56 E-value=1.6e+02 Score=27.29 Aligned_cols=94 Identities=11% Similarity=0.104 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCcccccccCCCcEEeeccchhhhccccCcceeeccCCcchHHHHHhc----CCcEe
Q 044218 267 QMDEIIAGIRNSGVRYLWVTRGDTSRFKDGHADDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYA----GVPML 342 (436)
Q Consensus 267 ~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~----GvP~l 342 (436)
.+..+.+.+++.++.+.+...... .. .. .+.. ..+..++-..+++ +|+-||-||++++++. ++|++
T Consensus 22 ~~~~i~~~L~~~g~~v~v~~~~~~-~~-~~---~~~~---~~~~~~~~~~~d~--vi~~GGDGt~l~~~~~~~~~~~pil 91 (291)
T PRK02155 22 PLESLAAFLAKRGFEVVFEADTAR-NI-GL---TGYP---ALTPEEIGARADL--AVVLGGDGTMLGIGRQLAPYGVPLI 91 (291)
T ss_pred HHHHHHHHHHHCCCEEEEecchhh-hc-Cc---cccc---ccChhHhccCCCE--EEEECCcHHHHHHHHHhcCCCCCEE
Confidence 356677778888888766422110 00 00 0000 0121223334566 9999999999999874 66776
Q ss_pred eccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHHHhcc
Q 044218 343 TFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKRFMDL 393 (436)
Q Consensus 343 ~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 393 (436)
.+-. - + +|-..+ ++.+++.+.|.+++++
T Consensus 92 GIn~-----------G-~--lGFL~~---------~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 92 GINH-----------G-R--LGFITD---------IPLDDMQETLPPMLAG 119 (291)
T ss_pred EEcC-----------C-C--cccccc---------CCHHHHHHHHHHHHcC
Confidence 6542 1 1 222222 3667777777777654
No 408
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=27.51 E-value=3.4e+02 Score=24.07 Aligned_cols=44 Identities=18% Similarity=-0.086 Sum_probs=35.6
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccc
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGF 57 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~ 57 (436)
...-+++...|+.|-..-.+.++.+-.+ +|..+.|++.+...+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~--~ge~~lyvs~ee~~~~ 63 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ--MGEPGIYVALEEHPVQ 63 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEEEeeCCHHH
Confidence 3456788888999999999998877668 8999999998765543
No 409
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.45 E-value=1.1e+02 Score=24.23 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=31.8
Q ss_pred EEEEEcCC-CccChHHHHHHHHHHHhCCCCcEEEEEeccccccccC
Q 044218 15 HVLALPYP-GRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIG 59 (436)
Q Consensus 15 ~vl~~~~~-~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~ 59 (436)
-++.+..| ..-.+.-.+=+...|.+ +|++||+..++.....++
T Consensus 5 vlv~lGCPeiP~qissaiYls~klkk--kgf~v~VaateAa~kLle 48 (148)
T COG4081 5 VLVSLGCPEIPPQISSAIYLSHKLKK--KGFDVTVAATEAALKLLE 48 (148)
T ss_pred EEEEecCCCCCccchHHHHHHHHhhc--cCccEEEecCHhhheeee
Confidence 34444444 55677777888999999 999999999986655444
No 410
>PRK07064 hypothetical protein; Provisional
Probab=27.43 E-value=1.7e+02 Score=29.90 Aligned_cols=75 Identities=23% Similarity=0.219 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCC-CcccccccC--CCcEEeeccc-h---------hhhccccCcceeeccCCcc-----
Q 044218 268 MDEIIAGIRNSGVRYLWVTRGDT-SRFKDGHAD--DRGIVVPWCD-Q---------LRVLCHASIGGFWTHCGLN----- 329 (436)
Q Consensus 268 ~~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~~--~~~~v~~~~p-q---------~~ll~~~~~~~~I~hgG~~----- 329 (436)
-..+++.|++.|++.++-+.+.. ..+.+. +. ++++++.-.. + ..+-..+.+ +++|.|-|
T Consensus 6 ~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~a-l~~~~~i~~i~~~hE~~A~~~A~gyar~tg~~~v--~~~t~GpG~~N~~ 82 (544)
T PRK07064 6 GELIAAFLEQCGVKTAFGVISIHNMPILDA-IGRRGKIRFVPARGEAGAVNMADAHARVSGGLGV--ALTSTGTGAGNAA 82 (544)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCcchHHHHH-HhccCCccEEeeccHHHHHHHHHHHHHhcCCCeE--EEeCCCCcHHHHH
Confidence 34577788888888777666542 111111 11 2344332211 1 111123444 89998855
Q ss_pred -hHHHHHhcCCcEeecc
Q 044218 330 -STIESLYAGVPMLTFP 345 (436)
Q Consensus 330 -s~~eal~~GvP~l~~P 345 (436)
.+.+|..-++|+|++-
T Consensus 83 ~~i~~A~~~~~Pvl~i~ 99 (544)
T PRK07064 83 GALVEALTAGTPLLHIT 99 (544)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 6778999999999885
No 411
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=26.89 E-value=4e+02 Score=24.65 Aligned_cols=108 Identities=16% Similarity=0.121 Sum_probs=0.0
Q ss_pred CCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccc--cccccCCCCCCCCeeEEecCCCCCCCCCCCCCHH
Q 044218 10 PTSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEE--WLGFIGSQSKPHNIRFRTLPNTIPSEHGRANDFA 87 (436)
Q Consensus 10 ~~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~--~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~~~~~ 87 (436)
..+++||+++.+|. |+-.-.+-=+..-.. -+++|..+.+.. ....+++. |+.+..++......
T Consensus 86 ~~~~~ri~vl~Sg~-gsnl~al~~~~~~~~--~~~~i~~visn~~~~~~lA~~~----gIp~~~~~~~~~~~-------- 150 (286)
T PRK06027 86 SAERKRVVILVSKE-DHCLGDLLWRWRSGE--LPVEIAAVISNHDDLRSLVERF----GIPFHHVPVTKETK-------- 150 (286)
T ss_pred cccCcEEEEEEcCC-CCCHHHHHHHHHcCC--CCcEEEEEEEcChhHHHHHHHh----CCCEEEeccCcccc--------
Q ss_pred HHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCc-chHHHHhHhcCCCeEEEcch
Q 044218 88 GFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYL-PWVVDVGNRRNIPVASLWTM 149 (436)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~-~~~~~~A~~~gIP~v~~~~~ 149 (436)
......+.+.+++. +||++|.-.+. .....+-+.+.-.++=++++
T Consensus 151 -------~~~~~~~~~~l~~~----------~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK06027 151 -------AEAEARLLELIDEY----------QPDLVVLARYMQILSPDFVARFPGRIINIHHS 196 (286)
T ss_pred -------chhHHHHHHHHHHh----------CCCEEEEecchhhcCHHHHhhccCCceecCcc
No 412
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.86 E-value=1.4e+02 Score=31.00 Aligned_cols=75 Identities=15% Similarity=0.266 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCC-Cccccccc-C-CCcEEeeccc--------h--hhhccccCcceeeccCCcc-----
Q 044218 268 MDEIIAGIRNSGVRYLWVTRGDT-SRFKDGHA-D-DRGIVVPWCD--------Q--LRVLCHASIGGFWTHCGLN----- 329 (436)
Q Consensus 268 ~~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~-~-~~~~v~~~~p--------q--~~ll~~~~~~~~I~hgG~~----- 329 (436)
-..+++.|++.|+..|+.+.++. ..+.+. + . ++++++.-.. . ..+-.++.+ +++|.|-|
T Consensus 24 a~~l~~~L~~~GV~~vFgvpG~~~~~l~da-l~~~~~i~~i~~rhE~~A~~~AdgYar~tg~~gv--~~~t~GpG~~N~l 100 (587)
T PRK06965 24 AEILMKALAAEGVEFIWGYPGGAVLYIYDE-LYKQDKIQHVLVRHEQAAVHAADGYARATGKVGV--ALVTSGPGVTNAV 100 (587)
T ss_pred HHHHHHHHHHcCCCEEEecCCcchHHHHHH-HhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCeE--EEECCCccHHHHH
Confidence 45688888888888888877653 111111 1 1 2344332111 1 112233444 89998844
Q ss_pred -hHHHHHhcCCcEeecc
Q 044218 330 -STIESLYAGVPMLTFP 345 (436)
Q Consensus 330 -s~~eal~~GvP~l~~P 345 (436)
++.+|...++|+|++.
T Consensus 101 ~gl~~A~~~~~Pvl~i~ 117 (587)
T PRK06965 101 TGIATAYMDSIPMVVIS 117 (587)
T ss_pred HHHHHHhhcCCCEEEEe
Confidence 6778999999999996
No 413
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=26.56 E-value=76 Score=27.49 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=25.7
Q ss_pred CeeEEE-EcCCc-chHHHHhHhcCCCeEEEcchh
Q 044218 119 AVTAII-ADTYL-PWVVDVGNRRNIPVASLWTMS 150 (436)
Q Consensus 119 ~~D~vI-~D~~~-~~~~~~A~~~gIP~v~~~~~~ 150 (436)
.||++| .|+.. ..+..=|.++|||++.+..+.
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn 141 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTD 141 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCC
Confidence 688875 67655 778888999999999986654
No 414
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=26.46 E-value=55 Score=26.33 Aligned_cols=36 Identities=6% Similarity=-0.015 Sum_probs=27.7
Q ss_pred ccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCC
Q 044218 24 RGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQ 61 (436)
Q Consensus 24 ~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~ 61 (436)
.-.+--.+=++..|++ +||+|++++++.....++-+
T Consensus 10 Pvq~p~alYl~~~Lk~--~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 10 PVQTPSALYLSYKLKK--KGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp TTHHHHHHHHHHHHHC--TTEEEEEEE-HHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHh--cCCeEEEecCHHHHhHhhhc
Confidence 3445566788999999 99999999999887766544
No 415
>PRK00784 cobyric acid synthase; Provisional
Probab=26.45 E-value=6.6e+02 Score=25.29 Aligned_cols=37 Identities=8% Similarity=0.175 Sum_probs=29.2
Q ss_pred CcEEEEEcCC-CccChHHHHHHHHHHHhCCCCcEEEEEec
Q 044218 13 LCHVLALPYP-GRGHVNPMMNICKLLVSRQPDILITFVVT 51 (436)
Q Consensus 13 ~~~vl~~~~~-~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~ 51 (436)
|+.+++.... .-|=..-...|++.|++ +|++|..+=+
T Consensus 2 ~~~ifItGT~T~vGKT~vt~~L~~~l~~--~G~~v~~~Kp 39 (488)
T PRK00784 2 AKALMVQGTASDAGKSTLVAGLCRILAR--RGYRVAPFKA 39 (488)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHHHHHH--CCCeEecccc
Confidence 3456666554 47999999999999999 9999987643
No 416
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=26.21 E-value=68 Score=31.77 Aligned_cols=36 Identities=6% Similarity=0.073 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
|+||+++..+.-|+ ..|+.|+++..+++||++....
T Consensus 1 m~~VVIIGgG~aG~-----~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 1 MPKIIVVGAVAGGA-----TCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred CCeEEEECCcHHHH-----HHHHHHHhhCCCCCEEEEECCC
Confidence 57999999888876 5566676644689999998764
No 417
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=26.14 E-value=2.6e+02 Score=25.05 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=19.1
Q ss_pred CeeEEEEcCCc----chHHHHhHhcCCCeEEE
Q 044218 119 AVTAIIADTYL----PWVVDVGNRRNIPVASL 146 (436)
Q Consensus 119 ~~D~vI~D~~~----~~~~~~A~~~gIP~v~~ 146 (436)
++|.+|..+.. ......+...|||+|.+
T Consensus 57 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 57 GYKGLLFSPISDVNLVPAVERAKKKGIPVVNV 88 (275)
T ss_pred CCCEEEECCCChHHhHHHHHHHHHCCCeEEEE
Confidence 78988876543 12345556789999985
No 418
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=26.10 E-value=92 Score=28.81 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=27.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
++|.|+..|..| .+.|+.|.+ +||+|+++...
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~--aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLK--AGHEVTVYNRT 32 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHH--CCCEEEEEeCC
Confidence 478888888777 478999999 99999998754
No 419
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.03 E-value=1.3e+02 Score=31.01 Aligned_cols=78 Identities=12% Similarity=0.151 Sum_probs=44.5
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCCC-cccccccC-CCcEEeeccc-h-------hhhccccCcceeeccCCcc------hH
Q 044218 268 MDEIIAGIRNSGVRYLWVTRGDTS-RFKDGHAD-DRGIVVPWCD-Q-------LRVLCHASIGGFWTHCGLN------ST 331 (436)
Q Consensus 268 ~~~l~~al~~~~~~~i~~~~~~~~-~~~~~~~~-~~~~v~~~~p-q-------~~ll~~~~~~~~I~hgG~~------s~ 331 (436)
-..+++.|++.|++.|+.+.++.. .+.+.... ++++++.--. + ..-...-..+++++|.|-| ++
T Consensus 7 a~~l~~~L~~~Gv~~vFgvpG~~~~~l~d~l~~~~~i~~i~~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi 86 (574)
T PRK07979 7 AEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGI 86 (574)
T ss_pred HHHHHHHHHHcCCCEEEEccCcchHHHHHHHHhcCCceEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHH
Confidence 345777888888888777766531 12111011 2344432211 1 1111112344489998855 56
Q ss_pred HHHHhcCCcEeecc
Q 044218 332 IESLYAGVPMLTFP 345 (436)
Q Consensus 332 ~eal~~GvP~l~~P 345 (436)
.+|...++|+|++.
T Consensus 87 ~~A~~~~~Pvl~i~ 100 (574)
T PRK07979 87 ATAYMDSIPLVVLS 100 (574)
T ss_pred HHHhhcCCCEEEEE
Confidence 79999999999995
No 420
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=25.85 E-value=3e+02 Score=26.93 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=26.1
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccc
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEW 54 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~ 54 (436)
|+|+++..+..+| .|++++++ -|+.+++++.+.+
T Consensus 1 ~kiliiG~G~~~~-----~l~~~~~~--~~~~~~~~~~~~~ 34 (423)
T TIGR00877 1 MKVLVIGNGGREH-----ALAWKLAQ--SPLVKYVYVAPGN 34 (423)
T ss_pred CEEEEECCChHHH-----HHHHHHHh--CCCccEEEEECCC
Confidence 6889998888754 68899988 7887777766544
No 421
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=25.83 E-value=87 Score=30.06 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=31.0
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 11 TSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 11 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
..+++|+++..|-.| +..|-.|.+ +|++|+++-...
T Consensus 2 ~~~~~vvVIGgGi~G-----ls~A~~La~--~G~~V~vie~~~ 37 (387)
T COG0665 2 SMKMDVVIIGGGIVG-----LSAAYYLAE--RGADVTVLEAGE 37 (387)
T ss_pred CCcceEEEECCcHHH-----HHHHHHHHH--cCCEEEEEecCc
Confidence 457899999988888 999999999 999999987554
No 422
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=25.71 E-value=3e+02 Score=26.98 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=21.7
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCC-CcEEEEE
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQP-DILITFV 49 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~-Gh~Vt~~ 49 (436)
|||+++..++..| +|++.|++ . |+.+.++
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~--~~~~~~i~~ 30 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQ--SPLVEKVYV 30 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHh--CCCCCEEEE
Confidence 6899999998777 59999988 5 4444333
No 423
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.66 E-value=1.8e+02 Score=29.96 Aligned_cols=74 Identities=16% Similarity=0.309 Sum_probs=44.1
Q ss_pred HHHHHHHHhCCCeEEEEEcCCC-Cccccccc--CCCcEEeeccc-h-------h--hhccccCcceeeccCCcc------
Q 044218 269 DEIIAGIRNSGVRYLWVTRGDT-SRFKDGHA--DDRGIVVPWCD-Q-------L--RVLCHASIGGFWTHCGLN------ 329 (436)
Q Consensus 269 ~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~--~~~~~v~~~~p-q-------~--~ll~~~~~~~~I~hgG~~------ 329 (436)
..+++.|++.|++.|+...++. ..+.+. + .++++++.-.. + . .+-..+.+ ++.|.|-|
T Consensus 8 ~~l~~~L~~~Gv~~vFgipG~~~~~l~~a-l~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv--~~vt~GPG~~N~l~ 84 (574)
T PRK06466 8 EMLVRALRDEGVEYIYGYPGGAVLHIYDA-LFKQDKVEHILVRHEQAATHMADGYARATGKTGV--VLVTSGPGATNAIT 84 (574)
T ss_pred HHHHHHHHHcCCCEEEECCCcchhHHHHH-hhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEE--EEECCCccHHHHHH
Confidence 5677888888888887776653 112111 1 12344432211 1 1 11223444 89998854
Q ss_pred hHHHHHhcCCcEeecc
Q 044218 330 STIESLYAGVPMLTFP 345 (436)
Q Consensus 330 s~~eal~~GvP~l~~P 345 (436)
++.+|...++|+|++-
T Consensus 85 gl~~A~~~~~Pvl~i~ 100 (574)
T PRK06466 85 GIATAYMDSIPMVVLS 100 (574)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 7779999999999995
No 424
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=25.62 E-value=93 Score=31.11 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=30.7
Q ss_pred CCCCCCCCCCCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEec
Q 044218 1 MDPHPAQVKPTSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVT 51 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~ 51 (436)
|+|.+ .+.+.++|+++..|..| |..|+.|.+ .|++|+++=.
T Consensus 1 ~~~~~---~~~~~~~VaIIGAG~aG-----L~aA~~l~~--~G~~v~vfE~ 41 (461)
T PLN02172 1 MAPAQ---NPINSQHVAVIGAGAAG-----LVAARELRR--EGHTVVVFER 41 (461)
T ss_pred CCCcc---cCCCCCCEEEECCcHHH-----HHHHHHHHh--cCCeEEEEec
Confidence 66642 23346889999998666 566899999 9999999753
No 425
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=25.57 E-value=1.7e+02 Score=30.00 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=21.6
Q ss_pred ceeeccCCcc------hHHHHHhcCCcEeecc
Q 044218 320 GGFWTHCGLN------STIESLYAGVPMLTFP 345 (436)
Q Consensus 320 ~~~I~hgG~~------s~~eal~~GvP~l~~P 345 (436)
+++++|.|-| .+.||...++|+|++.
T Consensus 65 gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~ 96 (548)
T PRK08978 65 GVCIATSGPGATNLITGLADALLDSVPVVAIT 96 (548)
T ss_pred EEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 3499998855 6779999999999995
No 426
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=25.55 E-value=89 Score=27.48 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=23.6
Q ss_pred CeeEEEEcCCc--chHHHHhHhcCCCeEEEcchh
Q 044218 119 AVTAIIADTYL--PWVVDVGNRRNIPVASLWTMS 150 (436)
Q Consensus 119 ~~D~vI~D~~~--~~~~~~A~~~gIP~v~~~~~~ 150 (436)
+||+||..... .....-....+||++.+....
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp --SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 89999988666 556666778899999986654
No 427
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=25.53 E-value=1.4e+02 Score=26.66 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=39.0
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccccccc
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFI 58 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~ 58 (436)
|.+|++..-++.|--.-.-.++.+|++ .|++|..+.-++-.+..
T Consensus 1 mr~iAiYGKGGIGKSTts~N~aAAla~--~GkkVl~vGCDPKaDST 44 (278)
T COG1348 1 MRQIAIYGKGGIGKSTTSQNLAAALAE--LGKKVLIVGCDPKADST 44 (278)
T ss_pred CceEEEecCCCcCcchhHHHHHHHHHH--cCCeEEEEcCCCCcchH
Confidence 568999999999999999999999999 99999999987766643
No 428
>PLN02880 tyrosine decarboxylase
Probab=25.44 E-value=1.4e+02 Score=30.11 Aligned_cols=71 Identities=14% Similarity=0.067 Sum_probs=43.2
Q ss_pred cceeeccCCcchHHHHHhcCC------------cEeeccccccc-hhhHHHHhhhhcee----eEeecCCccccCccCHH
Q 044218 319 IGGFWTHCGLNSTIESLYAGV------------PMLTFPLFWDQ-VPNSKQIVQDWKTG----WRVKKPEIASERLVTRD 381 (436)
Q Consensus 319 ~~~~I~hgG~~s~~eal~~Gv------------P~l~~P~~~DQ-~~na~~~~~~lG~G----~~~~~~~~~~~~~~t~~ 381 (436)
.+++++.||..+...||++.. +-+++- ..|| +.--.+..+.||+| +.++. +......++.+
T Consensus 147 ~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~-~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~-d~~~~~~md~~ 224 (490)
T PLN02880 147 GGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVY-ASDQTHSALQKACQIAGIHPENCRLLKT-DSSTNYALAPE 224 (490)
T ss_pred CceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEE-EcCCchHHHHHHHHHcCCCHHHEEEeec-CCCcCCcCCHH
Confidence 456899999888888876532 222222 2343 44444455577998 33443 21123578999
Q ss_pred HHHHHHHHHh
Q 044218 382 EITELVKRFM 391 (436)
Q Consensus 382 ~l~~~i~~ll 391 (436)
.|+++|++..
T Consensus 225 ~L~~~i~~~~ 234 (490)
T PLN02880 225 LLSEAISTDL 234 (490)
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 429
>PLN02487 zeta-carotene desaturase
Probab=25.36 E-value=1.6e+02 Score=30.40 Aligned_cols=36 Identities=8% Similarity=-0.074 Sum_probs=27.5
Q ss_pred CCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 10 PTSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 10 ~~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
..++++|+++..|- --+..|..|.+ +||+|+++=..
T Consensus 72 ~g~~~~v~iiG~G~-----~Gl~~a~~L~~--~g~~v~i~E~~ 107 (569)
T PLN02487 72 KGPKLKVAIIGAGL-----AGMSTAVELLD--QGHEVDIYESR 107 (569)
T ss_pred CCCCCeEEEECCCH-----HHHHHHHHHHh--CCCeeEEEecC
Confidence 34667999986652 26888999999 99999997543
No 430
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=25.33 E-value=1e+02 Score=26.07 Aligned_cols=107 Identities=19% Similarity=0.204 Sum_probs=65.0
Q ss_pred CCCeEEecCCCCCCCCCcccChHHHHHHHHHHHhCCCeEEEEEcCCCCcccccccCCCcEEeeccchhhhccccCcceee
Q 044218 244 SFPVLLAQFCTSHWEAFYSVSSAQMDEIIAGIRNSGVRYLWVTRGDTSRFKDGHADDRGIVVPWCDQLRVLCHASIGGFW 323 (436)
Q Consensus 244 ~~~~~~vGpl~~~wGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I 323 (436)
+..+-.+| +|.++ .++++.+...|.+++..-+....... . .... ..+.+-.++++.+++ ++
T Consensus 36 g~tvgIiG-----~G~IG-------~~vA~~l~~fG~~V~~~d~~~~~~~~-~--~~~~--~~~~~l~ell~~aDi--v~ 96 (178)
T PF02826_consen 36 GKTVGIIG-----YGRIG-------RAVARRLKAFGMRVIGYDRSPKPEEG-A--DEFG--VEYVSLDELLAQADI--VS 96 (178)
T ss_dssp TSEEEEES-----TSHHH-------HHHHHHHHHTT-EEEEEESSCHHHHH-H--HHTT--EEESSHHHHHHH-SE--EE
T ss_pred CCEEEEEE-----EcCCc-------CeEeeeeecCCceeEEecccCChhhh-c--cccc--ceeeehhhhcchhhh--hh
Confidence 45688888 57666 46777788899988776555321110 0 0111 255677789999999 88
Q ss_pred ccCCcchHHHHHhcCCcEeeccccccchhhHHHHhhhhcee-eEeecCCccccCccCHHHHHHHHHH
Q 044218 324 THCGLNSTIESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTG-WRVKKPEIASERLVTRDEITELVKR 389 (436)
Q Consensus 324 ~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G-~~~~~~~~~~~~~~t~~~l~~~i~~ 389 (436)
.|+-.+. ...+..|+..+. .++=| +-+.. ++...++.+.|.+++++
T Consensus 97 ~~~plt~----------------~T~~li~~~~l~-~mk~ga~lvN~---aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 97 LHLPLTP----------------ETRGLINAEFLA-KMKPGAVLVNV---ARGELVDEDALLDALES 143 (178)
T ss_dssp E-SSSST----------------TTTTSBSHHHHH-TSTTTEEEEES---SSGGGB-HHHHHHHHHT
T ss_pred hhhcccc----------------ccceeeeeeeee-ccccceEEEec---cchhhhhhhHHHHHHhh
Confidence 7774321 135677888888 44755 44443 44677888888888764
No 431
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.14 E-value=5.1e+02 Score=23.31 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCc---chHHHHhHhcCCCeEE
Q 044218 98 EAPFEELLDRLLLDDDEQPAAAVTAIIADTYL---PWVVDVGNRRNIPVAS 145 (436)
Q Consensus 98 ~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~---~~~~~~A~~~gIP~v~ 145 (436)
...++.+++.++ +-++.+.|..+ +-+..+|...|||++.
T Consensus 137 ~~aM~~~m~~Lk---------~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 137 EDAMEKLMEALK---------ERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHHH---------HCCeEEEcccccccchhhhhHhhcCCceee
Confidence 445667778886 67999999876 4466788999999987
No 432
>PLN02285 methionyl-tRNA formyltransferase
Probab=25.06 E-value=4e+02 Score=25.29 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=25.9
Q ss_pred CCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccc
Q 044218 10 PTSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEW 54 (436)
Q Consensus 10 ~~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~ 54 (436)
..++|||+|+..+..|.. -+-+|.+...+-..+|+|..+++...
T Consensus 3 ~~~~~kI~f~Gt~~fa~~-~L~~L~~~~~~~~~~~~iv~Vvt~~~ 46 (334)
T PLN02285 3 SGRKKRLVFLGTPEVAAT-VLDALLDASQAPDSAFEVAAVVTQPP 46 (334)
T ss_pred CCCccEEEEEECCHHHHH-HHHHHHhhhhccCCCCeEEEEEeCCC
Confidence 457899999977765421 22233333333113688988876643
No 433
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=25.06 E-value=1.1e+02 Score=26.74 Aligned_cols=34 Identities=15% Similarity=-0.046 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
+.++|+++..|..| ...++.|.+ .|++||++.+.
T Consensus 9 ~~k~vLVIGgG~va-----~~ka~~Ll~--~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVA-----GRRAITLLK--YGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHH--CCCeEEEEcCC
Confidence 45789999887665 567899999 99999999764
No 434
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.00 E-value=1.3e+02 Score=22.43 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=24.2
Q ss_pred CeeEEE--EcCCc----chHHHHhHhcCCCeEEEcchhHH
Q 044218 119 AVTAII--ADTYL----PWVVDVGNRRNIPVASLWTMSAL 152 (436)
Q Consensus 119 ~~D~vI--~D~~~----~~~~~~A~~~gIP~v~~~~~~~~ 152 (436)
++|+|| +|... +.+...|.+.++|++.....+..
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 678886 44332 55677889999999998755544
No 435
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=25.00 E-value=1.2e+02 Score=30.96 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCCeEEEEEcCCC-CcccccccCCCcEEeeccc----------hhhhccccCcceeeccCCcc------h
Q 044218 268 MDEIIAGIRNSGVRYLWVTRGDT-SRFKDGHADDRGIVVPWCD----------QLRVLCHASIGGFWTHCGLN------S 330 (436)
Q Consensus 268 ~~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~~~~~~v~~~~p----------q~~ll~~~~~~~~I~hgG~~------s 330 (436)
-..+++.|++.|++.++.+.++. ..+.+. ..++++++.-.. +..+-..+.+ ++.|+|-| .
T Consensus 15 a~~l~~~L~~~GV~~vFgiPG~~~~~l~da-l~~~i~~i~~~hE~~A~~~Adgyar~tg~~~v--~~vt~gpG~~N~~~g 91 (530)
T PRK07092 15 RDATIDLLRRFGITTVFGNPGSTELPFLRD-FPDDFRYVLGLQEAVVVGMADGYAQATGNAAF--VNLHSAAGVGNAMGN 91 (530)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCcchHHHHH-HhhcCCEEEEccHHHHHHHHHHHHHHhCCceE--EEeccCchHHHHHHH
Confidence 45678888888888888777653 112222 222333332211 1112233445 88998866 7
Q ss_pred HHHHHhcCCcEeecc
Q 044218 331 TIESLYAGVPMLTFP 345 (436)
Q Consensus 331 ~~eal~~GvP~l~~P 345 (436)
+.+|...++|+|++.
T Consensus 92 ia~A~~~~~Pvl~i~ 106 (530)
T PRK07092 92 LFTAFKNHTPLVITA 106 (530)
T ss_pred HHHHhhcCCCEEEEe
Confidence 889999999999884
No 436
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=24.95 E-value=77 Score=29.46 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=38.0
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccc--cccCCCCCCCCeeEEecC
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWL--GFIGSQSKPHNIRFRTLP 73 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~--~~~~~~~~~~~i~~~~l~ 73 (436)
..++|+++.+|++||.. |.-|+. .|.+|++-..+... +...+. ||.+..+.
T Consensus 17 kgK~iaIIGYGsQG~ah-----alNLRD--SGlnViiGlr~g~~s~~kA~~d----Gf~V~~v~ 69 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQ-----ALNLRD--SGLNVIIGLRKGSSSWKKAKED----GFKVYTVE 69 (338)
T ss_pred cCCeEEEEecChHHHHH-----Hhhhhh--cCCcEEEEecCCchhHHHHHhc----CCEeecHH
Confidence 45799999999999975 567888 99999997755333 344555 77776665
No 437
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.87 E-value=2.3e+02 Score=25.80 Aligned_cols=46 Identities=11% Similarity=0.142 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCc--chHHHHhHhcCCCeEEEcchh
Q 044218 98 EAPFEELLDRLLLDDDEQPAAAVTAIIADTYL--PWVVDVGNRRNIPVASLWTMS 150 (436)
Q Consensus 98 ~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~--~~~~~~A~~~gIP~v~~~~~~ 150 (436)
...+.++.+.+++. +..+|+++... -.+-.+|+..|+|.+.+.+..
T Consensus 203 ~~~l~~l~~~ik~~-------~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~ 250 (266)
T cd01018 203 PADLKRLIDLAKEK-------GVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLA 250 (266)
T ss_pred HHHHHHHHHHHHHc-------CCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcH
Confidence 33566777777766 89999998765 345678999999998876544
No 438
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=24.86 E-value=1.3e+02 Score=28.22 Aligned_cols=40 Identities=13% Similarity=-0.003 Sum_probs=32.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccccc
Q 044218 15 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLG 56 (436)
Q Consensus 15 ~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~ 56 (436)
-|+|..-|+-|=..-..++|-.+++ +|++|.++++++.+.
T Consensus 3 ~~~~~GKGGVGKTT~aaA~A~~~A~--~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 3 ILFFGGKGGVGKTTVAAALALALAR--RGKRTLLVSTDPAHS 42 (305)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH--TTS-EEEEESSTTTH
T ss_pred EEEEecCCCCCcHHHHHHHHHHHhh--CCCCeeEeecCCCcc
Confidence 3455555888999999999999999 999999999987665
No 439
>PLN02293 adenine phosphoribosyltransferase
Probab=24.72 E-value=1.8e+02 Score=24.90 Aligned_cols=28 Identities=4% Similarity=-0.015 Sum_probs=22.1
Q ss_pred CeeEEEEcC--CcchHHHHhHhcCCCeEEE
Q 044218 119 AVTAIIADT--YLPWVVDVGNRRNIPVASL 146 (436)
Q Consensus 119 ~~D~vI~D~--~~~~~~~~A~~~gIP~v~~ 146 (436)
++|+|++=. ..+.|..+|..+|+|++..
T Consensus 62 ~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 62 GISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 789988542 3477899999999998874
No 440
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.69 E-value=1.4e+02 Score=30.71 Aligned_cols=27 Identities=11% Similarity=0.416 Sum_probs=21.5
Q ss_pred cceeeccCCcc------hHHHHHhcCCcEeecc
Q 044218 319 IGGFWTHCGLN------STIESLYAGVPMLTFP 345 (436)
Q Consensus 319 ~~~~I~hgG~~------s~~eal~~GvP~l~~P 345 (436)
.++++.|.|-| .+++|.+.++|+|++.
T Consensus 78 ~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~ 110 (570)
T PRK06725 78 VGVVFATSGPGATNLVTGLADAYMDSIPLVVIT 110 (570)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCcCEEEEe
Confidence 34488898865 5678999999999984
No 441
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=24.66 E-value=66 Score=29.63 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=32.0
Q ss_pred cCCcchHH--HHHhcCCcEeeccccccchhhHHHHhhhhcee
Q 044218 325 HCGLNSTI--ESLYAGVPMLTFPLFWDQVPNSKQIVQDWKTG 364 (436)
Q Consensus 325 hgG~~s~~--eal~~GvP~l~~P~~~DQ~~na~~~~~~lG~G 364 (436)
-||||++. -|-.+||-++.+-+...|..+++.-.+..|+.
T Consensus 80 GCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 80 GCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred CCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 57888655 56677999999999999999999844344777
No 442
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=24.65 E-value=67 Score=28.55 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCCcEEEEEec
Q 044218 31 MNICKLLVSRQPDILITFVVT 51 (436)
Q Consensus 31 l~la~~L~~~~~Gh~Vt~~~~ 51 (436)
.+||++|.+ +|++|+++..
T Consensus 29 ~AIA~~la~--~Ga~Vvlv~~ 47 (227)
T TIGR02114 29 KIITETFLS--AGHEVTLVTT 47 (227)
T ss_pred HHHHHHHHH--CCCEEEEEcC
Confidence 588999999 9999998753
No 443
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.56 E-value=4.2e+02 Score=24.18 Aligned_cols=32 Identities=9% Similarity=0.053 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEec
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVT 51 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~ 51 (436)
+.+|.|+..|..| ..+|..|.+ +||+|+++-.
T Consensus 3 ~~kI~VIG~G~mG-----~~ia~~la~--~g~~V~~~d~ 34 (282)
T PRK05808 3 IQKIGVIGAGTMG-----NGIAQVCAV--AGYDVVMVDI 34 (282)
T ss_pred ccEEEEEccCHHH-----HHHHHHHHH--CCCceEEEeC
Confidence 4579998777665 467788889 9999999854
No 444
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=24.36 E-value=1.5e+02 Score=30.64 Aligned_cols=79 Identities=13% Similarity=0.211 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhCCCeEEEEEcCCC-CcccccccC---C----CcEEeec--------cchhhhccccCcceeeccCCcc-
Q 044218 267 QMDEIIAGIRNSGVRYLWVTRGDT-SRFKDGHAD---D----RGIVVPW--------CDQLRVLCHASIGGFWTHCGLN- 329 (436)
Q Consensus 267 ~~~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~~---~----~~~v~~~--------~pq~~ll~~~~~~~~I~hgG~~- 329 (436)
.-..+++.|++.|+..++.+.++. ..+.+. +. + .++.+.- +-...-...-..+++++|.|-|
T Consensus 9 ~a~~l~~~L~~~GV~~iFgvpG~~~~~l~da-l~~~~~~g~~~i~~V~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~ 87 (569)
T PRK08327 9 AAELFLELLKELGVDYIFINSGTDYPPIIEA-KARARAAGRPLPEFVICPHEIVAISMAHGYALVTGKPQAVMVHVDVGT 87 (569)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCCcHHHHHH-HHhhhhcCCCCCcEEecCCHHHHHHHHHHHHHhhCCCeEEEEecCHHH
Confidence 346788899999999988887753 112111 11 1 1333311 1111111112344488888844
Q ss_pred -----hHHHHHhcCCcEeeccc
Q 044218 330 -----STIESLYAGVPMLTFPL 346 (436)
Q Consensus 330 -----s~~eal~~GvP~l~~P~ 346 (436)
.+++|...++|+|++.-
T Consensus 88 ~N~~~gla~A~~d~~Pvl~I~G 109 (569)
T PRK08327 88 ANALGGVHNAARSRIPVLVFAG 109 (569)
T ss_pred HHHHHHHHHHhhcCCCEEEEec
Confidence 67799999999998853
No 445
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=24.31 E-value=3e+02 Score=27.63 Aligned_cols=99 Identities=17% Similarity=0.242 Sum_probs=58.1
Q ss_pred hhccccCcceee---ccCCcchHH-HHHhcCCc---EeeccccccchhhHHHHhhhhc-eeeEeecCCccccCccCHHHH
Q 044218 312 RVLCHASIGGFW---THCGLNSTI-ESLYAGVP---MLTFPLFWDQVPNSKQIVQDWK-TGWRVKKPEIASERLVTRDEI 383 (436)
Q Consensus 312 ~ll~~~~~~~~I---~hgG~~s~~-eal~~GvP---~l~~P~~~DQ~~na~~~~~~lG-~G~~~~~~~~~~~~~~t~~~l 383 (436)
.++..+++ ++ ...|+|.+. |-+++..+ +|++-.++ -|+ +.|+ .++.+.+ .+.+++
T Consensus 368 aly~~aDv--~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefa----Gaa---~~L~~~al~VNP--------~d~~~~ 430 (474)
T PF00982_consen 368 ALYRAADV--ALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFA----GAA---EQLSEAALLVNP--------WDIEEV 430 (474)
T ss_dssp HHHHH-SE--EEE--SSBS--HHHHHHHHHS-TS--EEEEETTB----GGG---GT-TTS-EEE-T--------T-HHHH
T ss_pred HHHHhhhh--EEecchhhccCCcceEEEEEecCCCCceEeeccC----CHH---HHcCCccEEECC--------CChHHH
Confidence 36677777 43 368998765 88887665 44444322 121 2345 4588888 689999
Q ss_pred HHHHHHHhccCccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044218 384 TELVKRFMDLNSDERKEMSKRAREVQEICREAAAENGSSITNLDAFLKDISR 435 (436)
Q Consensus 384 ~~~i~~ll~~~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 435 (436)
+++|.+.|+-.. ++-+++.+++.+.++. .++..=.++|+++|++
T Consensus 431 A~ai~~AL~M~~---~Er~~r~~~~~~~v~~-----~~~~~W~~~~l~~L~~ 474 (474)
T PF00982_consen 431 ADAIHEALTMPP---EERKERHARLREYVRE-----HDVQWWAESFLRDLKR 474 (474)
T ss_dssp HHHHHHHHT--H---HHHHHHHHHHHHHHHH-----T-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCH---HHHHHHHHHHHHHhHh-----CCHHHHHHHHHHHhhC
Confidence 999999997532 3455556666666664 5667778899988864
No 446
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=24.29 E-value=1.2e+02 Score=25.56 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=20.6
Q ss_pred CeeEEEEcCCcch-HHHHhHhcCCCeEEEcc
Q 044218 119 AVTAIIADTYLPW-VVDVGNRRNIPVASLWT 148 (436)
Q Consensus 119 ~~D~vI~D~~~~~-~~~~A~~~gIP~v~~~~ 148 (436)
+||+||....... ...--++.|||++.+..
T Consensus 60 ~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~ 90 (195)
T cd01143 60 KPDLVIVSSSSLAELLEKLKDAGIPVVVLPA 90 (195)
T ss_pred CCCEEEEcCCcCHHHHHHHHHcCCcEEEeCC
Confidence 8999998654322 33445778999888653
No 447
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=24.12 E-value=1.7e+02 Score=27.16 Aligned_cols=68 Identities=13% Similarity=0.033 Sum_probs=42.6
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEEcCCCCcccccccCCCcEEeeccchhhhccccCcceeeccCC--cchHHHH
Q 044218 263 VSSAQMDEIIAGIRNSGVRYLWVTRGDTSRFKDGHADDRGIVVPWCDQLRVLCHASIGGFWTHCG--LNSTIES 334 (436)
Q Consensus 263 ~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~hgG--~~s~~ea 334 (436)
.+...+..+.+++++.|.++++.+|......... . .......=....-..|.++.++.|+| ..=..|+
T Consensus 141 ~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~--~--~~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 141 PDDPRLYPIYEAAEELGVPVVIHTGAGPGGAGLE--K--GHSDPLYLDDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred CCChHHHHHHHHHHHcCCCEEEEeCCCCCCcccc--c--CCCCchHHHHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 3455578899999999999999888754322111 0 00111111333557789999999999 4444444
No 448
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=24.10 E-value=1.7e+02 Score=25.23 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=22.7
Q ss_pred CeeEEEEcC--CcchHHHHhHhcCCCeEEE
Q 044218 119 AVTAIIADT--YLPWVVDVGNRRNIPVASL 146 (436)
Q Consensus 119 ~~D~vI~D~--~~~~~~~~A~~~gIP~v~~ 146 (436)
++|+|++-. .++.|..+|..+|+|++..
T Consensus 50 ~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~v 79 (191)
T TIGR01744 50 GITKIVTIEASGIAPAIMTGLKLGVPVVFA 79 (191)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 789998432 3477888999999999996
No 449
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=24.05 E-value=6.7e+02 Score=24.30 Aligned_cols=85 Identities=14% Similarity=0.254 Sum_probs=54.3
Q ss_pred CCcccChHHHHHHHHHHHhCCCeEEEEEcCCC--Ccc-----------cccccCCC--cEEeeccchhh---hccccCcc
Q 044218 259 AFYSVSSAQMDEIIAGIRNSGVRYLWVTRGDT--SRF-----------KDGHADDR--GIVVPWCDQLR---VLCHASIG 320 (436)
Q Consensus 259 S~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~--~~~-----------~~~~~~~~--~~v~~~~pq~~---ll~~~~~~ 320 (436)
|++......+..+++++.+.+.++.+.+..+. ..+ .+....++ +.+.+|+||.+ ||-.|++
T Consensus 188 slF~Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~- 266 (374)
T PF10093_consen 188 SLFCYENAALASLLDAWAASPKPVHLLVPEGRALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDF- 266 (374)
T ss_pred EEEeCCchHHHHHHHHHhcCCCCeEEEecCCccHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCcc-
Confidence 55555666688888888877776666555432 111 00101234 44569999754 8888888
Q ss_pred eeeccCCcchHHHHHhcCCcEe--eccc
Q 044218 321 GFWTHCGLNSTIESLYAGVPML--TFPL 346 (436)
Q Consensus 321 ~~I~hgG~~s~~eal~~GvP~l--~~P~ 346 (436)
-+=.| ==|+.-|..+|+|.| ++|.
T Consensus 267 -NfVRG-EDSfVRAqwAgkPFvWhIYpQ 292 (374)
T PF10093_consen 267 -NFVRG-EDSFVRAQWAGKPFVWHIYPQ 292 (374)
T ss_pred -ceEec-chHHHHHHHhCCCceEecCcC
Confidence 33343 459999999999997 5554
No 450
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=24.03 E-value=85 Score=27.41 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=25.9
Q ss_pred CeeEEE-EcCCc-chHHHHhHhcCCCeEEEcchhH
Q 044218 119 AVTAII-ADTYL-PWVVDVGNRRNIPVASLWTMSA 151 (436)
Q Consensus 119 ~~D~vI-~D~~~-~~~~~~A~~~gIP~v~~~~~~~ 151 (436)
.||++| .|+.. ..+..=|.++|||++.+..+..
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~ 148 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDN 148 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCC
Confidence 688876 66654 7788889999999999876543
No 451
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=24.03 E-value=1.4e+02 Score=27.42 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=33.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
|.+|+|..=|+-|=..-++.||..|++ +|++|.++--+.
T Consensus 1 ~~~i~~~gKGGVGKTT~a~nLA~~La~--~G~rVLliD~Dp 39 (279)
T PRK13230 1 MRKFCFYGKGGIGKSTTVCNIAAALAE--SGKKVLVVGCDP 39 (279)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHh--CCCEEEEEeeCC
Confidence 567888877899999999999999999 999999985543
No 452
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=24.02 E-value=1.2e+02 Score=28.38 Aligned_cols=41 Identities=7% Similarity=-0.132 Sum_probs=31.3
Q ss_pred cEEEEEcCC---CccChHHHHHHHHHHHhCCCCcEEEEEecccccc
Q 044218 14 CHVLALPYP---GRGHVNPMMNICKLLVSRQPDILITFVVTEEWLG 56 (436)
Q Consensus 14 ~~vl~~~~~---~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~ 56 (436)
|+|+|+.-| -.-+..-..+|.++..+ +||+|.++.+....-
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~--rG~~v~~~~~~~l~~ 44 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQK--RGHELFFYEPGDLSV 44 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHH--cCCEEEEEehhheEE
Confidence 467777765 22455677899999999 999999999886553
No 453
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=23.94 E-value=1.9e+02 Score=27.68 Aligned_cols=117 Identities=13% Similarity=0.167 Sum_probs=63.5
Q ss_pred CCcEEEEEcCC--CccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCCCCCC--CCCCCCCHH
Q 044218 12 SLCHVLALPYP--GRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPNTIPS--EHGRANDFA 87 (436)
Q Consensus 12 ~~~~vl~~~~~--~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~--~~~~~~~~~ 87 (436)
+++||++++.| ++|==+-..++.+.+.. .|.+|.-+-.. +...++.... .+....+.+-... ....+....
T Consensus 1 ~~kkIaIlTSGGdaPGmNa~Iravvr~a~~--~g~eV~Gi~~G-y~GL~~~~i~--~l~~~~v~~~~~~GGT~lgssR~~ 75 (347)
T COG0205 1 MMKKIAILTSGGDAPGMNAVIRAVVRTAIK--EGLEVFGIYNG-YLGLLEGDIK--PLTREDVDDLINRGGTFLGSARFP 75 (347)
T ss_pred CCceEEEEccCCCCccHHHHHHHHHHHHHH--cCCEEEEEecc-hhhhcCCcce--eccccchhHHHhcCCeEEeeCCCC
Confidence 36899999987 66877888899999999 89999876543 2222222100 0111111100000 000000000
Q ss_pred HHHHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEE---EcCCcchHHHHhHhcCCCeEEE
Q 044218 88 GFLEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAII---ADTYLPWVVDVGNRRNIPVASL 146 (436)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI---~D~~~~~~~~~A~~~gIP~v~~ 146 (436)
.+.. .+.....++.+++. +.|.+| .|.....+..++++.++|+|-+
T Consensus 76 ~~~~------~e~~~~~~~~l~~~-------gId~LvvIGGDgS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 76 EFKT------EEGRKVAAENLKKL-------GIDALVVIGGDGSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred Cccc------HHHHHHHHHHHHHc-------CCCEEEEECCCChHHHHHHHHHhcCCcEEec
Confidence 0000 00111334444433 788876 5667788899999999999884
No 454
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=23.87 E-value=1.4e+02 Score=24.16 Aligned_cols=40 Identities=3% Similarity=-0.203 Sum_probs=34.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccc
Q 044218 13 LCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEW 54 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~ 54 (436)
+.+|++-+.++-+|-.=---++..|.. .|++|........
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~--~GfeVi~LG~~v~ 40 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTN--AGFNVVNLGVLSP 40 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHH--CCCEEEECCCCCC
Confidence 358999999999999999888999999 9999999876543
No 455
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=23.87 E-value=3.1e+02 Score=28.86 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=21.9
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEec
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVT 51 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~ 51 (436)
|||+|+..|..| +..-+.|.+ .||+|..+.+
T Consensus 1 mkivf~g~~~~a-----~~~l~~L~~--~~~~i~~V~t 31 (660)
T PRK08125 1 MKAVVFAYHDIG-----CVGIEALLA--AGYEIAAVFT 31 (660)
T ss_pred CeEEEECCCHHH-----HHHHHHHHH--CCCcEEEEEe
Confidence 688998766443 344488888 8999995554
No 456
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=23.82 E-value=1.3e+02 Score=23.56 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
....|+++++|+. +...++.++.|.+ .|.+++++...
T Consensus 8 ~g~di~iia~G~~--~~~al~A~~~L~~--~Gi~~~vi~~~ 44 (124)
T PF02780_consen 8 EGADITIIAYGSM--VEEALEAAEELEE--EGIKAGVIDLR 44 (124)
T ss_dssp SSSSEEEEEETTH--HHHHHHHHHHHHH--TTCEEEEEEEE
T ss_pred CCCCEEEEeehHH--HHHHHHHHHHHHH--cCCceeEEeeE
Confidence 3467889998887 4677999999999 99999987654
No 457
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=23.81 E-value=2.3e+02 Score=28.29 Aligned_cols=168 Identities=13% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHhhcCCCCCCCCCeeEEEEcCCcchHHHHhHhcCCCeEEEcchhHHHHHHHHhhHHHHhcCCCCCCCCCCCCcccccC
Q 044218 105 LDRLLLDDDEQPAAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERNGHFPFDLSEKGDELVDCI 184 (436)
Q Consensus 105 l~~~~~~~~~~~~~~~D~vI~D~~~~~~~~~A~~~gIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 184 (436)
+++..+. ...+++.+.....+..+.+++|||++.+...... .....++
T Consensus 229 i~~~~~A-------~lniv~~~~~~~~a~~Lee~~GiP~~~~~~p~G~-------------------------~~t~~~l 276 (455)
T PRK14476 229 IRELGRS-------AATIAIGESMRKAAEALEARTGVPYLVFPSLTGL-------------------------EAVDRFI 276 (455)
T ss_pred HHhhccC-------cEEEEecHHHHHHHHHHHHHhCCCeEecCCCcCh-------------------------HHHHHHH
Q ss_pred CCCCCCCCCCCCcccccCCchHHHHHHHhhcccccceEEEEcchhhhhHHHHHHHhhcCCCCeEEecCCCCCCCCCcccC
Q 044218 185 PGLEPTKLADFPTIFHGAGRKILHAALQSASKVSKAQYLLLSSVYKLEAKTIDALKEEFSFPVLLAQFCTSHWEAFYSVS 264 (436)
Q Consensus 185 p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vGpl~~~wGS~~~~~ 264 (436)
..+....-...+..+.+......+.+.+....+ .+.++...| .
T Consensus 277 ~~l~~~~g~~~~~~i~~er~~~~~~~~d~~~~l-------------------------~gkrvai~~------------~ 319 (455)
T PRK14476 277 ATLAQISGRPVPAKYRRQRAQLQDAMLDGHFYF-------------------------GGKRVAIAA------------E 319 (455)
T ss_pred HHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHh-------------------------cCCEEEEEe------------C
Q ss_pred hHHHHHHHHHHHhCCCeEEEEEcCCCCcccccccC-CCcEEeeccchhhhccccCcceeeccCCcchHHHHHhcCCcEee
Q 044218 265 SAQMDEIIAGIRNSGVRYLWVTRGDTSRFKDGHAD-DRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLYAGVPMLT 343 (436)
Q Consensus 265 ~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~-~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~~GvP~l~ 343 (436)
++....+.+.|.++|..+...+........+. ++ +++.+-+.-.-...+..+++ +|.+. ..-.-|...|+|.+-
T Consensus 320 ~~~~~~la~~L~elG~~v~~~~~~~~~~~~~~-~~~~~i~~~D~~~le~~~~~~dl--iig~s--~~~~~a~~~gip~~~ 394 (455)
T PRK14476 320 PDLLLALGSFLAEMGAEIVAAVTTTKSPALED-LPAEEVLIGDLEDLEELAEGADL--LITNS--HGRQAAERLGIPLLR 394 (455)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEeCCCcHHHHh-CCcCcEEeCCHHHHHHhccCCCE--EEECc--hhHHHHHHcCCCEEE
Q ss_pred ccc
Q 044218 344 FPL 346 (436)
Q Consensus 344 ~P~ 346 (436)
+.+
T Consensus 395 ~g~ 397 (455)
T PRK14476 395 VGF 397 (455)
T ss_pred ecC
No 458
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=23.80 E-value=1.1e+02 Score=23.59 Aligned_cols=35 Identities=14% Similarity=-0.009 Sum_probs=30.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 16 VLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 16 vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
++..+.++-.|-....-++..|.+ .|++|.++...
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~--~G~~v~~l~~~ 36 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRD--NGFEVIDLGVD 36 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHH--CCCEEEEcCCC
Confidence 577888899999999999999999 99999998543
No 459
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=23.75 E-value=2.3e+02 Score=26.92 Aligned_cols=42 Identities=7% Similarity=0.045 Sum_probs=34.2
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccc
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWL 55 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~ 55 (436)
+...|++..-|+.|=..-...||..|.+ .|++|.++..+...
T Consensus 30 ~~~ii~v~gkgG~GKSt~a~nLa~~la~--~g~rVllid~D~~~ 71 (329)
T cd02033 30 KTQIIAIYGKGGIGKSFTLANLSYMMAQ--QGKRVLLIGCDPKS 71 (329)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEEEeeecc
Confidence 3455677777888999999999999999 99999999765444
No 460
>PRK13604 luxD acyl transferase; Provisional
Probab=23.73 E-value=1.6e+02 Score=27.65 Aligned_cols=37 Identities=5% Similarity=-0.000 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEe
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVV 50 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~ 50 (436)
.+..+++++.|..++-..+..+|+.|.+ +|+.|.-+=
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~--~G~~vLrfD 71 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSS--NGFHVIRYD 71 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHH--CCCEEEEec
Confidence 3456777788888887779999999999 999988753
No 461
>PRK06756 flavodoxin; Provisional
Probab=23.73 E-value=1.4e+02 Score=24.12 Aligned_cols=37 Identities=11% Similarity=0.181 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCccChHHHH-HHHHHHHhCCCCcEEEEEec
Q 044218 13 LCHVLALPYPGRGHVNPMM-NICKLLVSRQPDILITFVVT 51 (436)
Q Consensus 13 ~~~vl~~~~~~~GH~~p~l-~la~~L~~~~~Gh~Vt~~~~ 51 (436)
||+|+++=.-..||..-+. .|++.|.+ .|++|.++-.
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~--~g~~v~~~~~ 38 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRE--TENEIEVIDI 38 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhh--cCCeEEEeeh
Confidence 4678777777899998876 46888988 9999877543
No 462
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=23.57 E-value=6.2e+02 Score=26.22 Aligned_cols=31 Identities=10% Similarity=0.154 Sum_probs=22.2
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 19 LPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 19 ~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
+...+.|-.|-+-.|+.+..+ +.-|.+++..
T Consensus 72 ~~t~GpG~~N~~~gla~A~~~---~~Pvl~I~G~ 102 (588)
T TIGR01504 72 IGTSGPAGTDMITGLYSASAD---SIPILCITGQ 102 (588)
T ss_pred EECCCccHHHHHHHHHHHhhc---CCCEEEEecC
Confidence 344556888888888888876 7777777643
No 463
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.54 E-value=1e+02 Score=27.68 Aligned_cols=42 Identities=12% Similarity=0.092 Sum_probs=25.9
Q ss_pred cccCcceeeccCCcch--HHHHHh--cCCcEeeccccccchhhHHHHh
Q 044218 315 CHASIGGFWTHCGLNS--TIESLY--AGVPMLTFPLFWDQVPNSKQIV 358 (436)
Q Consensus 315 ~~~~~~~~I~hgG~~s--~~eal~--~GvP~l~~P~~~DQ~~na~~~~ 358 (436)
.+|++ +|...+.+. ..+.+. +|+|++.++.......+...++
T Consensus 73 l~PDL--Ii~~~~~~~~~~~~~l~~~~gipvv~~~~~~~~~~~~~~i~ 118 (262)
T cd01147 73 LKPDV--VIDVGSDDPTSIADDLQKKTGIPVVVLDGGDSLEDTPEQIR 118 (262)
T ss_pred cCCCE--EEEecCCccchhHHHHHHhhCCCEEEEecCCchHhHHHHHH
Confidence 56777 887665554 556553 8999999886432333444444
No 464
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=23.46 E-value=2.9e+02 Score=28.79 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEEcCCC-Cccccccc-----CCCcEEeeccc-hhhhc-------cccCcceeeccCCcc--
Q 044218 266 AQMDEIIAGIRNSGVRYLWVTRGDT-SRFKDGHA-----DDRGIVVPWCD-QLRVL-------CHASIGGFWTHCGLN-- 329 (436)
Q Consensus 266 ~~~~~l~~al~~~~~~~i~~~~~~~-~~~~~~~~-----~~~~~v~~~~p-q~~ll-------~~~~~~~~I~hgG~~-- 329 (436)
..-..+++.|++.|++.|+...++. ..+.+. + .++++++.--. +...+ ..-..+++++|.|-|
T Consensus 20 ~~~~~l~~~L~~~GV~~vFgipG~~~~~l~da-l~~~~~~~~i~~i~~rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~ 98 (616)
T PRK07418 20 TGAYALMDSLKRHGVKHIFGYPGGAILPIYDE-LYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFGTSGPGAT 98 (616)
T ss_pred cHHHHHHHHHHHcCCCEEEeCcCcchHHHHHH-HHhcccCCCceEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCccHH
Confidence 3456788999999999888877653 112111 1 12344432211 11111 112344599998844
Q ss_pred ----hHHHHHhcCCcEeecc
Q 044218 330 ----STIESLYAGVPMLTFP 345 (436)
Q Consensus 330 ----s~~eal~~GvP~l~~P 345 (436)
++++|..-++|+|++-
T Consensus 99 n~l~gl~~A~~d~~Pvl~i~ 118 (616)
T PRK07418 99 NLVTGIATAQMDSVPMVVIT 118 (616)
T ss_pred HHHHHHHHHHhcCCCEEEEe
Confidence 7779999999999984
No 465
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=23.44 E-value=1.7e+02 Score=24.24 Aligned_cols=42 Identities=21% Similarity=0.085 Sum_probs=28.3
Q ss_pred chHHHHHHHHHhhcCCCCCCCCCeeEEEE--cCCcchHHHHhHhcCCCeE
Q 044218 97 MEAPFEELLDRLLLDDDEQPAAAVTAIIA--DTYLPWVVDVGNRRNIPVA 144 (436)
Q Consensus 97 ~~~~~~~ll~~~~~~~~~~~~~~~D~vI~--D~~~~~~~~~A~~~gIP~v 144 (436)
.....+++.+++.+.. ++|+||+ -+.+..+..+++.+++|.+
T Consensus 15 i~~~i~~la~~I~~~~------~~d~vvgv~~GG~~fa~~L~~~L~~~~v 58 (156)
T PRK09177 15 LHRDARALAWRLLPAG------QWKGIIAVTRGGLVPAAILARELGIRLV 58 (156)
T ss_pred HHHHHHHHHHHHHhhC------CCCEEEEEecCCeehHHHHHHHcCCCce
Confidence 3344555555554431 5788864 4556789999999999975
No 466
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=23.41 E-value=4.7e+02 Score=22.37 Aligned_cols=113 Identities=11% Similarity=0.080 Sum_probs=65.1
Q ss_pred ChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecCC----------CCCCCC------CCCCCHHHH
Q 044218 26 HVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLPN----------TIPSEH------GRANDFAGF 89 (436)
Q Consensus 26 H~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~~----------~l~~~~------~~~~~~~~~ 89 (436)
.+.-.-.+++.+.+. .|.++.+..+.+..+-++.. .|-+..+-. ..|... ........+
T Consensus 40 RL~~~~~~~~~~~~~-~~~~~~v~~ttd~~eAl~gA----DfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~ 114 (183)
T PF02056_consen 40 RLEIVERLARRMVEE-AGADLKVEATTDRREALEGA----DFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGF 114 (183)
T ss_dssp HHHHHHHHHHHHHHH-CTTSSEEEEESSHHHHHTTE----SEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHH
T ss_pred HHHHHHHHHHHHHHh-cCCCeEEEEeCCHHHHhCCC----CEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHH
Confidence 455566788888773 57888888888777777766 666665531 112111 112234455
Q ss_pred HHHHHHhchHHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcchHH---HHhHhcC-CCeEEEcchhHH
Q 044218 90 LEAVFTKMEAPFEELLDRLLLDDDEQPAAAVTAIIADTYLPWVV---DVGNRRN-IPVASLWTMSAL 152 (436)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~~~~---~~A~~~g-IP~v~~~~~~~~ 152 (436)
+..++ ..+.+.++.+++.+. .||+-+.+...+.+. .+.+.++ ++.+-++.++..
T Consensus 115 ~~alR--tipv~~~ia~~i~~~-------~PdAw~iNytNP~~~vt~a~~r~~~~~k~vGlCh~~~~ 172 (183)
T PF02056_consen 115 FRALR--TIPVMLDIARDIEEL-------CPDAWLINYTNPMGIVTEALSRYTPKIKVVGLCHGPQG 172 (183)
T ss_dssp HHHHH--HHHHHHHHHHHHHHH-------TTTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHHHH
T ss_pred HHHHh--hHHHHHHHHHHHHHh-------CCCcEEEeccChHHHHHHHHHHhCCCCCEEEECCCHHH
Confidence 54432 234445555555544 689988875555443 3455676 999998876654
No 467
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=23.36 E-value=1e+02 Score=23.53 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 28 NPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 28 ~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
.|.+.|+++|.+ +|.+|.++=|-
T Consensus 17 Sp~~~l~~~L~~--~g~~V~~~DP~ 39 (106)
T PF03720_consen 17 SPALELIEELKE--RGAEVSVYDPY 39 (106)
T ss_dssp -HHHHHHHHHHH--TT-EEEEE-TT
T ss_pred CHHHHHHHHHHH--CCCEEEEECCc
Confidence 799999999999 99998886544
No 468
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=23.30 E-value=1.8e+02 Score=27.99 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=27.5
Q ss_pred CCCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEec
Q 044218 9 KPTSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVT 51 (436)
Q Consensus 9 ~~~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~ 51 (436)
.++++|+|++. |+.|.+- ..|++.|.+ +||+|+.+..
T Consensus 17 ~~~~~~~IlVt--GgtGfIG--~~l~~~L~~--~G~~V~~v~r 53 (370)
T PLN02695 17 WPSEKLRICIT--GAGGFIA--SHIARRLKA--EGHYIIASDW 53 (370)
T ss_pred CCCCCCEEEEE--CCccHHH--HHHHHHHHh--CCCEEEEEEe
Confidence 34567898877 4445443 468999999 9999998874
No 469
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=23.27 E-value=1.5e+02 Score=26.58 Aligned_cols=42 Identities=12% Similarity=-0.066 Sum_probs=26.4
Q ss_pred CCCCCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 9 KPTSLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 9 ~~~~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
+....++|+++..---==..-+-.....+.+ +|++|++++-.
T Consensus 6 ~~~~~~~vL~v~aHPDDe~~g~ggtla~~~~--~G~~V~v~~lT 47 (237)
T COG2120 6 PMLDPLRVLVVFAHPDDEEIGCGGTLAKLAA--RGVEVTVVCLT 47 (237)
T ss_pred ccccCCcEEEEecCCcchhhccHHHHHHHHH--CCCeEEEEEcc
Confidence 3445677766655333233444555666778 89999998744
No 470
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.24 E-value=1.8e+02 Score=26.11 Aligned_cols=43 Identities=2% Similarity=-0.177 Sum_probs=28.5
Q ss_pred CCCCCCCCcEEEEEcCCCcc-ChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 6 AQVKPTSLCHVLALPYPGRG-HVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 6 ~~~~~~~~~~vl~~~~~~~G-H~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
|.+...-.-++++++.++.| -+ -.++|++|.+ +|++|.+....
T Consensus 2 ~~~~~~~~~k~~lItGas~g~GI--G~a~a~~la~--~G~~v~l~~r~ 45 (258)
T PRK07533 2 MQPLLPLAGKRGLVVGIANEQSI--AWGCARAFRA--LGAELAVTYLN 45 (258)
T ss_pred CCcccccCCCEEEEECCCCCCcH--HHHHHHHHHH--cCCEEEEEeCC
Confidence 44333334467777776642 22 2789999999 99999886543
No 471
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=23.21 E-value=4.8e+02 Score=23.90 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCCeeEEEEcCCcc--hHHHHhHhcCCCeEEEcc
Q 044218 99 APFEELLDRLLLDDDEQPAAAVTAIIADTYLP--WVVDVGNRRNIPVASLWT 148 (436)
Q Consensus 99 ~~~~~ll~~~~~~~~~~~~~~~D~vI~D~~~~--~~~~~A~~~gIP~v~~~~ 148 (436)
..+.++.+.+++. +..+|+++.... .+-.+|+..|+|.+.+.+
T Consensus 207 ~~l~~l~~~ik~~-------~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~ 251 (282)
T cd01017 207 KQLAELVEFVKKS-------DVKYIFFEENASSKIAETLAKETGAKLLVLNP 251 (282)
T ss_pred HHHHHHHHHHHHc-------CCCEEEEeCCCChHHHHHHHHHcCCcEEEecc
Confidence 3456666777665 899999998763 355689999999987643
No 472
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=23.21 E-value=1.8e+02 Score=23.46 Aligned_cols=44 Identities=11% Similarity=-0.091 Sum_probs=35.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCC
Q 044218 16 VLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQ 61 (436)
Q Consensus 16 vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~ 61 (436)
-.++..+..--++|.+-|+...+. .|++|+++.+--....+++.
T Consensus 6 ~IIl~SG~~dk~~~a~iias~A~A--~G~EV~VF~TfwGL~~l~K~ 49 (137)
T COG2210 6 GIILASGTLDKAYAALIIASGAAA--MGYEVTVFFTFWGLMALRKE 49 (137)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHH--cCCeEEEEEeHHHHHHhhcc
Confidence 356677888999999999999999 99999999886555555554
No 473
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=23.19 E-value=2.5e+02 Score=19.74 Aligned_cols=29 Identities=10% Similarity=0.092 Sum_probs=20.5
Q ss_pred CeeEEEEcCCc-----chHHHHhHhcCCCeEEEc
Q 044218 119 AVTAIIADTYL-----PWVVDVGNRRNIPVASLW 147 (436)
Q Consensus 119 ~~D~vI~D~~~-----~~~~~~A~~~gIP~v~~~ 147 (436)
.+|.+|..... -.+...|+..|||.+.+.
T Consensus 31 ~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~ 64 (71)
T PF10686_consen 31 HPDMVLVHGGAPKGADRIAARWARERGVPVIRFP 64 (71)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeC
Confidence 57777766555 335556789999999863
No 474
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=23.13 E-value=1.1e+02 Score=27.19 Aligned_cols=43 Identities=12% Similarity=-0.051 Sum_probs=35.8
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecccccc
Q 044218 12 SLCHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLG 56 (436)
Q Consensus 12 ~~~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~ 56 (436)
+..-+++...++.|-..-...++....+ +|..|.|++.+...+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g~~~~y~~~e~~~~ 66 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK--QGKKVYVITTENTSK 66 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh--CCCEEEEEEcCCCHH
Confidence 4556788888899999999999888888 899999999875543
No 475
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=23.10 E-value=95 Score=27.29 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=23.7
Q ss_pred cEEEEEc-CCCccChHHHHHHHHHHHhCCCCcEEEEEec
Q 044218 14 CHVLALP-YPGRGHVNPMMNICKLLVSRQPDILITFVVT 51 (436)
Q Consensus 14 ~~vl~~~-~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~ 51 (436)
|+|.|+. .|..| ..+++.|.+ .||+|+++..
T Consensus 1 MkI~IIGG~G~mG-----~ala~~L~~--~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQG-----KGLALRLAK--AGNKIIIGSR 32 (219)
T ss_pred CEEEEEcCCCHHH-----HHHHHHHHh--CCCEEEEEEc
Confidence 5788885 56555 378999999 9999998754
No 476
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=22.91 E-value=1e+02 Score=30.46 Aligned_cols=26 Identities=15% Similarity=0.026 Sum_probs=21.6
Q ss_pred CeeEEEEcCCcchHHHHhHhcCCCeEEEc
Q 044218 119 AVTAIIADTYLPWVVDVGNRRNIPVASLW 147 (436)
Q Consensus 119 ~~D~vI~D~~~~~~~~~A~~~gIP~v~~~ 147 (436)
+||++|.... ...+|+++|||+..+.
T Consensus 369 ~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 369 KPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred CCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 8999998865 5668999999997653
No 477
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=22.90 E-value=2.9e+02 Score=26.58 Aligned_cols=74 Identities=14% Similarity=0.247 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHhCCCeEEEEEcCCCCcccccccCCCcEEeeccch-------------h--------------hhc--c
Q 044218 265 SAQMDEIIAGIRNSGVRYLWVTRGDTSRFKDGHADDRGIVVPWCDQ-------------L--------------RVL--C 315 (436)
Q Consensus 265 ~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~pq-------------~--------------~ll--~ 315 (436)
+.++..++.+|.+.|+.+.+.+..+.... +.+++++.+-+. . .-+ .
T Consensus 10 p~~~~~la~~L~~~G~~v~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (396)
T cd03818 10 PGQFRHLAPALAAQGHEVVFLTEPNAAPP-----PGGVRVVRYRPPRGPTSGTHPYLREFEEAVLRGQAVARALLALRAK 84 (396)
T ss_pred chhHHHHHHHHHHCCCEEEEEecCCCCCC-----CCCeeEEEecCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhc
Confidence 35678899999999999888776653221 113444433221 1 001 1
Q ss_pred --ccCcceeeccCCcchHHHH--HhcCCcEeecc
Q 044218 316 --HASIGGFWTHCGLNSTIES--LYAGVPMLTFP 345 (436)
Q Consensus 316 --~~~~~~~I~hgG~~s~~ea--l~~GvP~l~~P 345 (436)
.+++ ++.|.||+...-. +.-++|+++..
T Consensus 85 ~~~pdv--i~~h~~~~~~~~l~~~~~~~~~v~~~ 116 (396)
T cd03818 85 GFRPDV--IVAHPGWGETLFLKDVWPDAPLIGYF 116 (396)
T ss_pred CCCCCE--EEECCccchhhhHHHhCCCCCEEEEE
Confidence 3777 9999999855433 23468888743
No 478
>PRK10037 cell division protein; Provisional
Probab=22.88 E-value=1.4e+02 Score=26.85 Aligned_cols=38 Identities=8% Similarity=-0.088 Sum_probs=31.3
Q ss_pred CcEEEEEcC-CCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 13 LCHVLALPY-PGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 13 ~~~vl~~~~-~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
|+.|+|... |+-|=..-...||..|++ +|++|.++=.+
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~--~G~rVLlID~D 39 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQM--LGENVLVIDAC 39 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHh--cCCcEEEEeCC
Confidence 345666666 688999999999999999 99999999443
No 479
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=22.87 E-value=97 Score=29.18 Aligned_cols=32 Identities=19% Similarity=0.109 Sum_probs=26.9
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
|+|.++..|+.|- .+|..|.+ .||+|+++...
T Consensus 1 MkI~IiGaGa~G~-----ala~~L~~--~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISILGAGSFGT-----AIAIALSS--KKISVNLWGRN 32 (326)
T ss_pred CEEEEECcCHHHH-----HHHHHHHH--CCCeEEEEecC
Confidence 4788998888874 67899999 99999998874
No 480
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.82 E-value=1.2e+02 Score=27.22 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=20.0
Q ss_pred CeeEEEEcCCcch--HHH-HhHhcCCCeEEEcc
Q 044218 119 AVTAIIADTYLPW--VVD-VGNRRNIPVASLWT 148 (436)
Q Consensus 119 ~~D~vI~D~~~~~--~~~-~A~~~gIP~v~~~~ 148 (436)
+||+||....... ... +.+..|||++.+..
T Consensus 74 ~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 74 KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred CCCEEEEecCCccchhHHHHHHhhCCCEEEEec
Confidence 8999998754432 122 33458999988754
No 481
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.77 E-value=1.6e+02 Score=27.53 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=38.4
Q ss_pred ccccCcceeeccCCcchHHHHHhc----CCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHH
Q 044218 314 LCHASIGGFWTHCGLNSTIESLYA----GVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKR 389 (436)
Q Consensus 314 l~~~~~~~~I~hgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ 389 (436)
...+++ +|+=||=||++.+.+. ++|++.+... + +|-.-+ +..+++.+++++
T Consensus 70 ~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G------------~--lGFL~~---------~~~~~~~~~l~~ 124 (306)
T PRK03372 70 ADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG------------H--VGFLAE---------AEAEDLDEAVER 124 (306)
T ss_pred ccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC------------C--Cceecc---------CCHHHHHHHHHH
Confidence 344666 9999999999998764 7888877641 1 232222 367788888888
Q ss_pred Hhcc
Q 044218 390 FMDL 393 (436)
Q Consensus 390 ll~~ 393 (436)
++++
T Consensus 125 i~~g 128 (306)
T PRK03372 125 VVDR 128 (306)
T ss_pred HHcC
Confidence 8765
No 482
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=22.68 E-value=1.1e+02 Score=29.87 Aligned_cols=31 Identities=16% Similarity=0.092 Sum_probs=25.6
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEec
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVT 51 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~ 51 (436)
|+|.|+..|..| +.+|..|.+ +||+|+.+-.
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~--~G~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLAD--LGHEVTGVDI 31 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHh--cCCeEEEEEC
Confidence 478898877776 688999999 9999988754
No 483
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=22.58 E-value=86 Score=29.40 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=40.3
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEecC
Q 044218 14 CHVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRTLP 73 (436)
Q Consensus 14 ~~vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~l~ 73 (436)
|+|+++..|+.|=+ +|-.|.+ .||+|+++..++..+.+++. |+......
T Consensus 1 mkI~IlGaGAvG~l-----~g~~L~~--~g~~V~~~~R~~~~~~l~~~----GL~i~~~~ 49 (307)
T COG1893 1 MKILILGAGAIGSL-----LGARLAK--AGHDVTLLVRSRRLEALKKK----GLRIEDEG 49 (307)
T ss_pred CeEEEECCcHHHHH-----HHHHHHh--CCCeEEEEecHHHHHHHHhC----CeEEecCC
Confidence 68999999988854 5788999 99999999998887888887 77766554
No 484
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=22.51 E-value=3e+02 Score=20.84 Aligned_cols=45 Identities=4% Similarity=-0.016 Sum_probs=30.5
Q ss_pred cEEEEEcC--CCccC-hHHHHHHHHHHHhCCCC---cEEEEEeccccccccCC
Q 044218 14 CHVLALPY--PGRGH-VNPMMNICKLLVSRQPD---ILITFVVTEEWLGFIGS 60 (436)
Q Consensus 14 ~~vl~~~~--~~~GH-~~p~l~la~~L~~~~~G---h~Vt~~~~~~~~~~~~~ 60 (436)
|+|+++.. |.... ..-.+.++..+.. .| ++|+++........+.+
T Consensus 1 k~v~~i~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~v~v~~~g~gv~~~~~ 51 (122)
T PF02635_consen 1 KKVFFIVTSGPYDDERAKIALRLANAAAA--MGDYGHDVVVFFHGDGVKLALK 51 (122)
T ss_dssp EEEEEEE-S-TTTBSHHHHHHHHHHHHHH--TTHTTSEEEEEE-GGGGGGGBT
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHH--cCCCCCcEEEEEEchHHHHHHh
Confidence 35555554 43333 6777888888888 99 99999988876665554
No 485
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=22.48 E-value=1.4e+02 Score=28.02 Aligned_cols=74 Identities=16% Similarity=0.288 Sum_probs=48.5
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEEcCCCCcccccccCCCcEEeeccchhhhccccCcceeeccCCcchHHHHHh--cCCc
Q 044218 263 VSSAQMDEIIAGIRNSGVRYLWVTRGDTSRFKDGHADDRGIVVPWCDQLRVLCHASIGGFWTHCGLNSTIESLY--AGVP 340 (436)
Q Consensus 263 ~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I~hgG~~s~~eal~--~GvP 340 (436)
........+.+++.+..+..||.+.+.. +..++.++++...+-.+|.. ||-..-..+++-+++ +|++
T Consensus 50 ~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~---------g~~rlL~~lD~~~i~~~PK~--fiGySDiTaL~~al~~~~g~~ 118 (308)
T cd07062 50 SPEERAEELMAAFADPSIKAIIPTIGGD---------DSNELLPYLDYELIKKNPKI--FIGYSDITALHLAIYKKTGLV 118 (308)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEECCccc---------CHhhhhhhcCHHHHhhCCCE--EEeccHHHHHHHHHHHhcCCe
Confidence 4556688899999999999999988753 22444555555555556655 666666556666653 3666
Q ss_pred Eeecccc
Q 044218 341 MLTFPLF 347 (436)
Q Consensus 341 ~l~~P~~ 347 (436)
.+-=|+.
T Consensus 119 t~hGp~~ 125 (308)
T cd07062 119 TYYGPNL 125 (308)
T ss_pred EEECccc
Confidence 6665654
No 486
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=22.39 E-value=75 Score=30.98 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=23.6
Q ss_pred CccChHHHH---HHHHHHHhCCCCcEEEEEeccccc
Q 044218 23 GRGHVNPMM---NICKLLVSRQPDILITFVVTEEWL 55 (436)
Q Consensus 23 ~~GH~~p~l---~la~~L~~~~~Gh~Vt~~~~~~~~ 55 (436)
-.||+.|++ .+++-++. +||+|.|++...-+
T Consensus 15 HlGH~~~~l~ADv~aR~~r~--~G~~v~~~tGtDeh 48 (391)
T PF09334_consen 15 HLGHLYPYLAADVLARYLRL--RGHDVLFVTGTDEH 48 (391)
T ss_dssp BHHHHHHHHHHHHHHHHHHH--TT-EEEEEEEEE-S
T ss_pred CCChhHHHHHHHHHHHHHhh--cccceeeEEecchh
Confidence 469999887 57888888 99999999865433
No 487
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=22.34 E-value=1.8e+02 Score=25.59 Aligned_cols=38 Identities=3% Similarity=-0.090 Sum_probs=26.6
Q ss_pred cEEEEEcCC----CccChHHHHHHHHHHHhCCCCcEEEEEeccc
Q 044218 14 CHVLALPYP----GRGHVNPMMNICKLLVSRQPDILITFVVTEE 53 (436)
Q Consensus 14 ~~vl~~~~~----~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~ 53 (436)
++|+++..+ ......=++.--..|.+ .|++|+++++..
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~--aG~~V~~aSp~~ 43 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDR--AGAEAVCFAPDI 43 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHH--CCCEEEEEeCCC
Confidence 577777651 12245556666788999 999999999754
No 488
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=22.33 E-value=2e+02 Score=24.71 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=29.7
Q ss_pred CcEEEEEcC-CCccChHHHHHHHHHHHhCCCCcEEEEEecc
Q 044218 13 LCHVLALPY-PGRGHVNPMMNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 13 ~~~vl~~~~-~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
++.|+|... ++-|=..-...||..|++ +|++|.++-.+
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~--~G~rVllID~D 55 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQ--AGYKTLLIDGD 55 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHh--CCCeEEEEeCC
Confidence 445555533 577889999999999999 99999988554
No 489
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=22.32 E-value=3e+02 Score=22.83 Aligned_cols=77 Identities=13% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCcccccccCCCcEEeec-cchhhhccccCcceeeccCCcchHHHH---HhcCCcEe
Q 044218 267 QMDEIIAGIRNSGVRYLWVTRGDTSRFKDGHADDRGIVVPW-CDQLRVLCHASIGGFWTHCGLNSTIES---LYAGVPML 342 (436)
Q Consensus 267 ~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~-~pq~~ll~~~~~~~~I~hgG~~s~~ea---l~~GvP~l 342 (436)
.+....++..+.+-+++-+++.... ..+. ..+.....++ .+-..++...+-..++-=||.||+.|. +.+++|++
T Consensus 42 lM~a~a~ga~~~gg~viGVlp~~l~-~~~~-~~~~~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~ 119 (159)
T TIGR00725 42 VMEAVSKGAREAGGLVVGILPDEDF-AGNP-YLTIKVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVV 119 (159)
T ss_pred HHHHHHHHHHHCCCeEEEECChhhc-cCCC-CceEEEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEE
Q ss_pred ecc
Q 044218 343 TFP 345 (436)
Q Consensus 343 ~~P 345 (436)
+++
T Consensus 120 ~l~ 122 (159)
T TIGR00725 120 VLR 122 (159)
T ss_pred EEE
No 490
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=22.31 E-value=3.3e+02 Score=25.05 Aligned_cols=24 Identities=13% Similarity=0.005 Sum_probs=19.9
Q ss_pred HHHHHHHHhCCCCcEEEEEecccccc
Q 044218 31 MNICKLLVSRQPDILITFVVTEEWLG 56 (436)
Q Consensus 31 l~la~~L~~~~~Gh~Vt~~~~~~~~~ 56 (436)
.++|..+.+ +|++|.++..++-..
T Consensus 3 ~a~a~~~a~--~g~~vllv~~Dp~~~ 26 (284)
T TIGR00345 3 CATAIRLAE--QGKKVLLVSTDPAHS 26 (284)
T ss_pred HHHHHHHHH--CCCeEEEEECCCCCC
Confidence 468889999 999999999876554
No 491
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=22.18 E-value=1e+02 Score=29.51 Aligned_cols=86 Identities=17% Similarity=0.342 Sum_probs=51.3
Q ss_pred CCcccChHHHHHHHHHHHhCCCeEEEEEcCCCC------cc-------cccccCCC--cEEeeccchhh---hccccCcc
Q 044218 259 AFYSVSSAQMDEIIAGIRNSGVRYLWVTRGDTS------RF-------KDGHADDR--GIVVPWCDQLR---VLCHASIG 320 (436)
Q Consensus 259 S~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~------~~-------~~~~~~~~--~~v~~~~pq~~---ll~~~~~~ 320 (436)
|++...+..+..+++++++.+.++...+..+.. -+ .+....++ +.+.++++|.+ ||-.|++
T Consensus 186 SLF~Ye~~al~~ll~~~~~~~~pv~lLvp~Gr~~~~v~~~l~~~~~~~g~~~~~g~L~~~~LPf~~Q~~yD~LLW~cD~- 264 (371)
T TIGR03837 186 SLFCYENAALPALLDALAQSGSPVHLLVPEGRALAAVAAWLGDALLAAGDVHRRGALTVAVLPFVPQDDYDRLLWACDL- 264 (371)
T ss_pred EEEecCChhHHHHHHHHHhCCCCeEEEecCCccHHHHHHHhCccccCCccccccCceEEEEcCCCChhhHHHHHHhChh-
Confidence 445555566777777777766655544443210 00 00001233 45569998754 8878888
Q ss_pred eeeccCCcchHHHHHhcCCcEe--ecccc
Q 044218 321 GFWTHCGLNSTIESLYAGVPML--TFPLF 347 (436)
Q Consensus 321 ~~I~hgG~~s~~eal~~GvP~l--~~P~~ 347 (436)
=+=. |==|+.-|..+|+|.| ++|..
T Consensus 265 -NfVR-GEDSFVRAqWAgkPfvWhIYPQe 291 (371)
T TIGR03837 265 -NFVR-GEDSFVRAQWAGKPFVWHIYPQE 291 (371)
T ss_pred -cEee-chhHHHHHHHcCCCceeecccCc
Confidence 3333 4459999999999998 55643
No 492
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=22.09 E-value=1.3e+02 Score=25.37 Aligned_cols=32 Identities=16% Similarity=0.348 Sum_probs=20.7
Q ss_pred ccccCcceeeccCCcch--HHHHH-hcCCcEeecccc
Q 044218 314 LCHASIGGFWTHCGLNS--TIESL-YAGVPMLTFPLF 347 (436)
Q Consensus 314 l~~~~~~~~I~hgG~~s--~~eal-~~GvP~l~~P~~ 347 (436)
-.+|++ +|..++.+. +.+.+ ..|+|.+.++..
T Consensus 67 ~l~PDl--ii~~~~~~~~~~~~~l~~~gIpvv~i~~~ 101 (186)
T cd01141 67 ALKPDL--VILYGGFQAQTILDKLEQLGIPVLYVNEY 101 (186)
T ss_pred ccCCCE--EEEecCCCchhHHHHHHHcCCCEEEeCCC
Confidence 356777 776555433 55555 578999888753
No 493
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.99 E-value=1.7e+02 Score=27.29 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=37.9
Q ss_pred ccccCcceeeccCCcchHHHHHhc----CCcEeeccccccchhhHHHHhhhhceeeEeecCCccccCccCHHHHHHHHHH
Q 044218 314 LCHASIGGFWTHCGLNSTIESLYA----GVPMLTFPLFWDQVPNSKQIVQDWKTGWRVKKPEIASERLVTRDEITELVKR 389 (436)
Q Consensus 314 l~~~~~~~~I~hgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~~~~~lG~G~~~~~~~~~~~~~~t~~~l~~~i~~ 389 (436)
...+++ +|+=||=||++.+.+. ++|++.+-.. + +|---+ ++++++.+++++
T Consensus 62 ~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G------------~--lGFLt~---------~~~~~~~~~l~~ 116 (292)
T PRK01911 62 DGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTG------------R--LGFLAT---------VSKEEIEETIDE 116 (292)
T ss_pred ccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecC------------C--CCcccc---------cCHHHHHHHHHH
Confidence 334666 9999999999999873 7787766531 1 221111 467888888888
Q ss_pred Hhcc
Q 044218 390 FMDL 393 (436)
Q Consensus 390 ll~~ 393 (436)
++++
T Consensus 117 i~~g 120 (292)
T PRK01911 117 LLNG 120 (292)
T ss_pred HHcC
Confidence 8875
No 494
>PRK05246 glutathione synthetase; Provisional
Probab=21.98 E-value=1.4e+02 Score=28.06 Aligned_cols=41 Identities=5% Similarity=-0.078 Sum_probs=31.5
Q ss_pred CcEEEEEcCC---CccChHHHHHHHHHHHhCCCCcEEEEEeccccc
Q 044218 13 LCHVLALPYP---GRGHVNPMMNICKLLVSRQPDILITFVVTEEWL 55 (436)
Q Consensus 13 ~~~vl~~~~~---~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~ 55 (436)
.|||+|+.-| -.-......+|+++-++ +||+|.++++....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~st~~l~~aa~~--~G~~v~~~~~~dl~ 44 (316)
T PRK05246 1 MMKVAFQMDPIESINIKKDSTFAMMLEAQR--RGHELFYYEPDDLS 44 (316)
T ss_pred CceEEEEeCCHHHCCCCCChHHHHHHHHHH--cCCEEEEEehhhcE
Confidence 3688888776 22344667889999999 99999999987554
No 495
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=21.92 E-value=59 Score=29.87 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=25.5
Q ss_pred HHHHHHHhCCCCcEEEEEeccccccccCCCCCCCCeeEEe
Q 044218 32 NICKLLVSRQPDILITFVVTEEWLGFIGSQSKPHNIRFRT 71 (436)
Q Consensus 32 ~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~~~~~~i~~~~ 71 (436)
.+|..|.+ .||+|+++......+.+++. |+.+..
T Consensus 5 ~~a~~L~~--~G~~V~l~~r~~~~~~i~~~----Gl~i~~ 38 (293)
T TIGR00745 5 LYGAYLAR--AGHDVTLLARGEQLEALNQE----GLRIVS 38 (293)
T ss_pred HHHHHHHh--CCCcEEEEecHHHHHHHHHC----CcEEEe
Confidence 46888999 99999999987555566666 666543
No 496
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=21.79 E-value=1.1e+02 Score=21.06 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCCCcEEEEEecc
Q 044218 31 MNICKLLVSRQPDILITFVVTE 52 (436)
Q Consensus 31 l~la~~L~~~~~Gh~Vt~~~~~ 52 (436)
+..|..|.+ +|++|+++=..
T Consensus 9 l~aA~~L~~--~g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAK--AGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHH--TTSEEEEEESS
T ss_pred HHHHHHHHH--CCCcEEEEecC
Confidence 678999999 99999997543
No 497
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=21.73 E-value=2.7e+02 Score=25.80 Aligned_cols=75 Identities=11% Similarity=-0.008 Sum_probs=41.8
Q ss_pred CCCeEEecCCCCCCCCCcccChHHHHHHHHHHHhCCCeEEEEEcCCCCcccccccCCCcEEeeccchhhhccccCcceee
Q 044218 244 SFPVLLAQFCTSHWEAFYSVSSAQMDEIIAGIRNSGVRYLWVTRGDTSRFKDGHADDRGIVVPWCDQLRVLCHASIGGFW 323 (436)
Q Consensus 244 ~~~~~~vGpl~~~wGS~~~~~~~~~~~l~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~pq~~ll~~~~~~~~I 323 (436)
..++..+| +|.++ ..++..+...|.++.+.-+... ..... .........+....+++..+++ +|
T Consensus 151 gk~v~IiG-----~G~iG-------~avA~~L~~~G~~V~v~~R~~~-~~~~~-~~~g~~~~~~~~l~~~l~~aDi--Vi 214 (287)
T TIGR02853 151 GSNVMVLG-----FGRTG-------MTIARTFSALGARVFVGARSSA-DLARI-TEMGLIPFPLNKLEEKVAEIDI--VI 214 (287)
T ss_pred CCEEEEEc-----ChHHH-------HHHHHHHHHCCCEEEEEeCCHH-HHHHH-HHCCCeeecHHHHHHHhccCCE--EE
Confidence 45688888 35444 4567777788887665444321 11100 0112223334344557778888 99
Q ss_pred ccCCcchHHHH
Q 044218 324 THCGLNSTIES 334 (436)
Q Consensus 324 ~hgG~~s~~ea 334 (436)
+|...+.+.+.
T Consensus 215 nt~P~~ii~~~ 225 (287)
T TIGR02853 215 NTIPALVLTAD 225 (287)
T ss_pred ECCChHHhCHH
Confidence 99987654443
No 498
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=21.61 E-value=51 Score=26.81 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=27.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCC
Q 044218 16 VLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQ 61 (436)
Q Consensus 16 vl~~~~~~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~ 61 (436)
|+++..|+.|- -+|..|.+ .||+|++++.....+.+++.
T Consensus 1 I~I~G~GaiG~-----~~a~~L~~--~g~~V~l~~r~~~~~~~~~~ 39 (151)
T PF02558_consen 1 ILIIGAGAIGS-----LYAARLAQ--AGHDVTLVSRSPRLEAIKEQ 39 (151)
T ss_dssp EEEESTSHHHH-----HHHHHHHH--TTCEEEEEESHHHHHHHHHH
T ss_pred CEEECcCHHHH-----HHHHHHHH--CCCceEEEEccccHHhhhhe
Confidence 44555555553 46889999 99999999998744445555
No 499
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=21.61 E-value=1.7e+02 Score=28.57 Aligned_cols=44 Identities=25% Similarity=0.353 Sum_probs=30.9
Q ss_pred HHHHHHhhcCCCCCCCCCeeEEEEcCCc----chHHHHh---HhcCCCeEEEcchhHH
Q 044218 102 EELLDRLLLDDDEQPAAAVTAIIADTYL----PWVVDVG---NRRNIPVASLWTMSAL 152 (436)
Q Consensus 102 ~~ll~~~~~~~~~~~~~~~D~vI~D~~~----~~~~~~A---~~~gIP~v~~~~~~~~ 152 (436)
.++.+++++. ++|+||--+.| -|+..++ ++.|||+|...+....
T Consensus 326 ~eIa~~Lk~d-------gVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~~~pI 376 (431)
T TIGR01917 326 KEFSKELLAA-------GVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICTVTPI 376 (431)
T ss_pred HHHHHHHHHc-------CCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeechhH
Confidence 4677778776 89999866543 4455554 6789999998665443
No 500
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=21.58 E-value=1.4e+02 Score=23.24 Aligned_cols=37 Identities=3% Similarity=0.077 Sum_probs=30.7
Q ss_pred CccChHHHHHHHHHHHhCCCCcEEEEEeccccccccCCC
Q 044218 23 GRGHVNPMMNICKLLVSRQPDILITFVVTEEWLGFIGSQ 61 (436)
Q Consensus 23 ~~GH~~p~l~la~~L~~~~~Gh~Vt~~~~~~~~~~~~~~ 61 (436)
..|+...++.+++.+++ +|..|..++........+..
T Consensus 62 ~sg~~~~~~~~~~~ak~--~g~~vi~iT~~~~~~l~~~a 98 (131)
T PF01380_consen 62 YSGETRELIELLRFAKE--RGAPVILITSNSESPLARLA 98 (131)
T ss_dssp SSSTTHHHHHHHHHHHH--TTSEEEEEESSTTSHHHHHS
T ss_pred ccccchhhhhhhHHHHh--cCCeEEEEeCCCCCchhhhC
Confidence 67888999999999999 99999888877666655544
Done!