BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044220
(410 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 144 bits (364), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 121/470 (25%), Positives = 201/470 (42%), Gaps = 90/470 (19%)
Query: 9 VKIHEITRITPFFSSTAEFSFPLTLFDTYWFKFHPIERLFF------------------- 49
+ + E ++++P + + S LT FD +W + PI LFF
Sbjct: 7 LTVLEQSQVSPPPDTLGDKSLQLTFFDFFWLRSPPINNLFFYELPITRSQFTETVVPNIK 66
Query: 50 -----CLSH----------VALRCRKTSHLLLPKDGVSVTVAESNTDFNYLCGNAIHEAV 94
L H +K + D V+VT AE N D N L GN
Sbjct: 67 HSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRNCD 126
Query: 95 EFXXXXXXXXXXXXXDD--KAAVIAIQITMFPNEGFCIGISTHHIIFDGRSSVMFMKDPT 152
+F D K + ++Q+T+FPN+G IGI+ HH + D + F+K T
Sbjct: 127 KFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWT 186
Query: 153 GIDMVFINNWLAFTVSDTNPNKRSLKSLP----------------------SFVDLDNLV 190
I NN +F + T P + P S + +
Sbjct: 187 SIARSG-NNDESFLANGTRPLYDRIIKYPMLDEAYLKRAKVESFNEDYVTQSLAGPSDKL 245
Query: 191 QATFVLTCEDIKELRDNILSVLDKVNGNEVKKFDKLHLSTFVLTGAYVYSCMVKAKGAEN 250
+ATF+LT I +L+D +L+ L + ++S+F + AY++SC+ K++ N
Sbjct: 246 RATFILTRAVINQLKDRVLAQLPTLE----------YVSSFTVACAYIWSCIAKSR---N 292
Query: 251 NRDVLFGFTADYRKCLDLPIPMNYFGNCVGTRAMVAKTRDFMEETGVL----FVAEKLSD 306
++ LFGF D R + PIP YFGNCVG A +AKT + + G + + E L
Sbjct: 293 DKLQLFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHK 352
Query: 307 MIKELEDGL---TLEGFEEKLVKLMPMMKSVAQGAQGLGVIGSNRFDAYKSDFG---PEK 360
+ + +DG+ +E F + + + MP + G L RF Y DFG P+K
Sbjct: 353 TLTDYKDGVLKDDMESFNDLVSEGMPTTMTWVSGTPKL------RF--YDMDFGWGKPKK 404
Query: 361 VEILTVFSAGSISLVESRDGPGVVEIDLVLEKQELDIFASLFEQELKELI 410
+E +++ G+IS+ ++ +EI + + +++ F +F+ LK +
Sbjct: 405 LETVSIDHNGAISINSCKESNEDLEIGVCISATQMEDFVHIFDDGLKAYL 454
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 120/466 (25%), Positives = 195/466 (41%), Gaps = 90/466 (19%)
Query: 13 EITRITPFFSSTAEFSFPLTLFDTYWFKFHPIERLFF----------------------- 49
E ++++P + + S LT FD +W + PI LFF
Sbjct: 11 EQSQVSPPPDTLGDKSLQLTFFDFFWLRSPPINNLFFYELPITRSQFTETVVPNIKHSLS 70
Query: 50 -CLSH----------VALRCRKTSHLLLPKDGVSVTVAESNTDFNYLCGNAIHEAVEFXX 98
L H +K + D V+VT AE N D N L GN +F
Sbjct: 71 ITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRNCDKFYD 130
Query: 99 XXXXXXXXXXXDD--KAAVIAIQITMFPNEGFCIGISTHHIIFDGRSSVMFMKDPTGIDM 156
D K + ++Q+T+FPN+G IGI+ HH + D + F+K T I
Sbjct: 131 LVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIAR 190
Query: 157 VFINNWLAFTVSDTNPNKRSLKSLP----------------------SFVDLDNLVQATF 194
NN +F + T P + P S + ++ATF
Sbjct: 191 SG-NNDESFLANGTRPLYDRIIKYPXLDEAYLKRAKVESFNEDYVTQSLAGPSDKLRATF 249
Query: 195 VLTCEDIKELRDNILSVLDKVNGNEVKKFDKLHLSTFVLTGAYVYSCMVKAKGAENNRDV 254
+LT I +L+D +L+ L + ++S+F + AY++SC+ K++ N++
Sbjct: 250 ILTRAVINQLKDRVLAQLPTLE----------YVSSFTVACAYIWSCIAKSR---NDKLQ 296
Query: 255 LFGFTADYRKCLDLPIPMNYFGNCVGTRAMVAKTRDFMEETGVL----FVAEKLSDMIKE 310
LFGF D R PIP YFGNCVG A +AKT + + G + + E L + +
Sbjct: 297 LFGFPIDRRARXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTD 356
Query: 311 LEDGL---TLEGFEEKLVKLMPMMKSVAQGAQGLGVIGSNRFDAYKSDFG---PEKVEIL 364
+DG+ E F + + + P + G L RF Y DFG P+K+E +
Sbjct: 357 YKDGVLKDDXESFNDLVSEGXPTTXTWVSGTPKL------RF--YDXDFGWGKPKKLETV 408
Query: 365 TVFSAGSISLVESRDGPGVVEIDLVLEKQELDIFASLFEQELKELI 410
++ G+IS+ ++ +EI + + + + F +F+ LK +
Sbjct: 409 SIDHNGAISINSCKESNEDLEIGVCISATQXEDFVHIFDDGLKAYL 454
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 128/469 (27%), Positives = 200/469 (42%), Gaps = 93/469 (19%)
Query: 13 EITRITPFFSSTAEFSFPLTLFDTYWFKFHPIERLFFC---------LSHVALRCRKTSH 63
E ++ P S E + PLT FD W FH R+ F + + + +
Sbjct: 6 EQCQVVPSPGSATELTLPLTYFDHVWLAFHRXRRILFYKLPISRPDFVQTIIPTLKDSLS 65
Query: 64 LLL------------PKD-------------GVSVTVAESNTDFNYLCGNAIHEAVEFXX 98
L L P+D VSV +ES+ DFNYL G +F
Sbjct: 66 LTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDXDFNYLIGYHPRNTKDFYH 125
Query: 99 XXXXXXXXXXXD--DKAAVIAIQITMFPNEGFCIGISTHHIIFDGRSSVMFMK-----DP 151
A V+AIQ+T+FPN G IG + HH+ DG + V F++ +
Sbjct: 126 FVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNK 185
Query: 152 TGIDMVFI-NNWLAF----TVSDTNPNKRSL----------KSLPSFVDLDNLVQATFVL 196
G D F+ N ++ F + D N S+ V + V+ TF++
Sbjct: 186 FGGDEQFLANEFIPFYDRSVIKDPNGVGXSIWNEXKKYKHXXKXSDVVTPPDKVRGTFII 245
Query: 197 TCEDIKELRDNILSVLDKVNGNEVKKFDKLHLSTFVLTGAYVYSCMVKAKGA-----ENN 251
T DI +L++ +L+ K+ H+++F +T AYV++C++K++ A + N
Sbjct: 246 TRHDIGKLKNLVLTRRPKLT----------HVTSFTVTCAYVWTCIIKSEAATGEEIDEN 295
Query: 252 RDVLFGFTADYRKCLDLPIPMNYFGNCVGTRAMVAKTR--DFMEETG----VLFVAEKLS 305
FG AD R + P+P +YFGN + VA+TR D + G V + E +
Sbjct: 296 GXEFFGCAADCRAQFNPPLPPSYFGNAL--VGYVARTRQVDLAGKEGFTIAVELIGEAIR 353
Query: 306 DMIKELEDGLTLEGFEEKLVKLMPMMKSVAQGAQGLGVIGSNRFDAYKSDFG---PEKVE 362
K+ E L+ F+E + L V GS + D Y +DFG PEK+E
Sbjct: 354 KRXKDEEWILSGSWFKE---------YDKVDAKRSLSVAGSPKLDLYAADFGWGRPEKLE 404
Query: 363 ILTVFSAGSI--SLVESRDGPGVVEIDLVLEKQELDIFASLFEQELKEL 409
+++ + I SL +S+D G +EI L L K + FA+ F + L
Sbjct: 405 FVSIDNDDGISXSLSKSKDSDGDLEIGLSLSKTRXNAFAAXFTHGISFL 453
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 112/267 (41%), Gaps = 37/267 (13%)
Query: 114 AVIAIQITMFPNEGFCIGISTHHIIFDGRSSVMFMKDPT----GIDMV---FINNWLAFT 166
A++ +Q+T F G +G+ H DG S + F+ + G+D+ FI+ L
Sbjct: 133 ALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPPFIDRTLLRA 192
Query: 167 VSDTNPN--------KRSLKSLPSFVDLDNLVQ---ATFVLTCEDIKELRDNILSVLDKV 215
P +LK P D++ + + F LT E I L+ K
Sbjct: 193 RDPPQPQFQHIEYQPPPALKVSPQTAKSDSVPETAVSIFKLTREQISALKAK-----SKE 247
Query: 216 NGNEVKKFDKLHLSTFVLTGAYVYSCMVKAKGAENNRDVLFGFTADYRKCLDLPIPMNYF 275
+GN + S++ + +V+ C KA+G E ++ D R L +P YF
Sbjct: 248 DGNTIS------YSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGYF 301
Query: 276 GNCVGTRAMVAKTRDFMEETGVLFVAEKLSDMIKELEDGLTLEGFEEKLVKLMPMMKSVA 335
GN + T +A D +E V + A K+ D + +++ + ++L P +K++
Sbjct: 302 GNVIFTATPIAIAGD-LEFKPVWYAASKIHDALARMDNDYLRSALD--YLELQPDLKALV 358
Query: 336 QGAQ-----GLGVIGSNRFDAYKSDFG 357
+GA LG+ R + +DFG
Sbjct: 359 RGAHTFKCPNLGITSWVRLPIHDADFG 385
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 111/267 (41%), Gaps = 37/267 (13%)
Query: 114 AVIAIQITMFPNEGFCIGISTHHIIFDGRSSVMFMKDPT----GIDMV---FINNWLAFT 166
A++ +Q+T F G +G+ H DG S + F+ + G+D+ FI+ L
Sbjct: 136 ALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPPFIDRTLLRA 195
Query: 167 VSDTNPN--------KRSLKSLPSFVDLDNLVQ---ATFVLTCEDIKELRDNILSVLDKV 215
P +L P D++ + + F LT E I L+ K
Sbjct: 196 RDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAK-----SKE 250
Query: 216 NGNEVKKFDKLHLSTFVLTGAYVYSCMVKAKGAENNRDVLFGFTADYRKCLDLPIPMNYF 275
+GN + S++ + +V+ C KA+G E ++ D R L +P YF
Sbjct: 251 DGNTIS------YSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGYF 304
Query: 276 GNCVGTRAMVAKTRDFMEETGVLFVAEKLSDMIKELEDGLTLEGFEEKLVKLMPMMKSVA 335
GN + T +A D +E V + A K+ D + +++ + ++L P +K++
Sbjct: 305 GNVIFTATPIAIAGD-LEFKPVWYAASKIHDALARMDNDYLRSALD--YLELQPDLKALV 361
Query: 336 QGAQ-----GLGVIGSNRFDAYKSDFG 357
+GA LG+ R + +DFG
Sbjct: 362 RGAHTFKXPNLGITSWVRLPIHDADFG 388
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 111/267 (41%), Gaps = 37/267 (13%)
Query: 114 AVIAIQITMFPNEGFCIGISTHHIIFDGRSSVMFMKDPT----GIDMV---FINNWLAFT 166
A++ +Q+T F G +G+ H DG S + F+ + G+D+ FI+ L
Sbjct: 136 ALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPPFIDRTLLRA 195
Query: 167 VSDTNPN--------KRSLKSLPSFVDLDNLVQ---ATFVLTCEDIKELRDNILSVLDKV 215
P +L P D++ + + F LT E I L+ K
Sbjct: 196 RDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAK-----SKE 250
Query: 216 NGNEVKKFDKLHLSTFVLTGAYVYSCMVKAKGAENNRDVLFGFTADYRKCLDLPIPMNYF 275
+GN + S++ + +V+ C KA+G E ++ D R L +P YF
Sbjct: 251 DGNTIS------YSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGYF 304
Query: 276 GNCVGTRAMVAKTRDFMEETGVLFVAEKLSDMIKELEDGLTLEGFEEKLVKLMPMMKSVA 335
GN + T +A D +E V + A K+ D + +++ + ++L P +K++
Sbjct: 305 GNVIFTATPIAIAGD-LEFKPVWYAASKIHDALARMDNDYLRSALD--YLELQPDLKALV 361
Query: 336 QGAQ-----GLGVIGSNRFDAYKSDFG 357
+GA LG+ R + +DFG
Sbjct: 362 RGAHTFKXPNLGITSWVRLPIHDADFG 388
>pdb|1J93|A Chain A, Crystal Structure And Substrate Binding Modeling Of The
Uroporphyrinogen-Iii Decarboxylase From Nicotiana
Tabacum: Implications For The Catalytic Mechanism
Length = 353
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 281 TRAMVAKTRDFMEETGVLFVAEKLSDMIKELEDGLTLEGF 320
T A V K R+F+ E V +V E L+ + KE+ + + GF
Sbjct: 111 TAADVEKVREFIPEKSVPYVGEALTILRKEVNNQAAVLGF 150
>pdb|1CC7|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|1CC8|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|2GGP|A Chain A, Solution Structure Of The Atx1-Cu(I)-Ccc2a Complex
pdb|1FES|A Chain A, Solution Structure Of The Apo Form Of The Yeast
Metallochaperone, Atx1
pdb|3K7R|A Chain A, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|B Chain B, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|C Chain C, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|D Chain D, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|E Chain E, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|F Chain F, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|G Chain G, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|H Chain H, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|I Chain I, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|J Chain J, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|K Chain K, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|L Chain L, Crystal Structure Of [tm][cuatx1]3
Length = 73
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 369 AGSISLVESRDGPGVVEIDLVLEKQELDIFASL 401
+G+++ V ++ P V +ID+ LEKQ +D++ +L
Sbjct: 19 SGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTL 51
>pdb|1FD8|A Chain A, Solution Structure Of The Cu(I) Form Of The Yeast
Metallochaperone, Atx1
Length = 73
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 369 AGSISLVESRDGPGVVEIDLVLEKQELDIFASL 401
+G+++ V ++ P V +ID+ LEKQ +D++ +L
Sbjct: 19 SGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTL 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,528,047
Number of Sequences: 62578
Number of extensions: 460336
Number of successful extensions: 1183
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1153
Number of HSP's gapped (non-prelim): 17
length of query: 410
length of database: 14,973,337
effective HSP length: 101
effective length of query: 309
effective length of database: 8,652,959
effective search space: 2673764331
effective search space used: 2673764331
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)