BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044222
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
Length = 1023
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 66 AKARPLSLDDDAAVRVTPFLHKLFKDYVD--PDEVPTPLPNHKTCVALEVVGH 116
+KAR +LDD V V P L+ + +DY++ PD + N T V +E VGH
Sbjct: 740 SKAR--NLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTV-VEKVGH 789
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 1023
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 66 AKARPLSLDDDAAVRVTPFLHKLFKDYVD--PDEVPTPLPNHKTCVALEVVGH 116
+KAR +LDD V V P L+ + +DY++ PD + N T V +E VGH
Sbjct: 740 SKAR--NLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTV-VEKVGH 789
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
Length = 1023
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 66 AKARPLSLDDDAAVRVTPFLHKLFKDYVD--PDEVPTPLPNHKTCVALEVVGH 116
+KAR +LDD V V P L+ + +DY++ PD + N T V +E VGH
Sbjct: 740 SKAR--NLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTV-VEKVGH 789
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 66 AKARPLSLDDDAAVRVTPFLHKLFKDYVD--PDEVPTPLPNHKTCVALEVVGH 116
+KAR +LDD V V P L+ + +DY++ PD + N T V +E VGH
Sbjct: 740 SKAR--NLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTV-VEKVGH 789
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
Length = 1023
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 66 AKARPLSLDDDAAVRVTPFLHKLFKDYVD--PDEVPTPLPNHKTCVALEVVGH 116
+KAR +LDD V V P L+ + +DY++ PD + N T V +E VGH
Sbjct: 740 SKAR--NLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTV-VEKVGH 789
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
Length = 1023
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 66 AKARPLSLDDDAAVRVTPFLHKLFKDYVD--PDEVPTPLPNHKTCVALEVVGH 116
+KAR +LDD V V P L+ + +DY++ PD + N T V +E VGH
Sbjct: 740 SKAR--NLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTV-VEKVGH 789
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
Length = 1023
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 66 AKARPLSLDDDAAVRVTPFLHKLFKDYVD--PDEVPTPLPNHKTCVALEVVGH 116
+KAR +LDD V V P L+ + +DY++ PD + N T V +E VGH
Sbjct: 740 SKAR--NLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTV-VEKVGH 789
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
Length = 1023
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 66 AKARPLSLDDDAAVRVTPFLHKLFKDYVD--PDEVPTPLPNHKTCVALEVVGH 116
+KAR +LDD V V P L+ + +DY++ PD + N T V +E VGH
Sbjct: 740 SKAR--NLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTV-VEKVGH 789
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 1060
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 66 AKARPLSLDDDAAVRVTPFLHKLFKDYVD--PDEVPTPLPNHKTCVALEVVGH 116
+KAR +LDD V V P L+ + +DY++ PD + N T V +E VGH
Sbjct: 777 SKAR--NLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTV-VEKVGH 826
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 66 AKARPLSLDDDAAVRVTPFLHKLFKDYVD--PDEVPTPLPNHKTCVALEVVGH 116
+KAR +LDD V V P L+ + +DY++ PD + N T V +E VGH
Sbjct: 740 SKAR--NLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTV-VEKVGH 789
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 66 AKARPLSLDDDAAVRVTPFLHKLFKDYVD--PDEVPTPLPNHKTCVALEVVGH 116
+KAR +LDD V V P L+ + +DY++ PD + N T V +E VGH
Sbjct: 740 SKAR--NLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTV-VEKVGH 789
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 66 AKARPLSLDDDAAVRVTPFLHKLFKDYVD--PDEVPTPLPNHKTCVALEVVGH 116
+KAR +LDD V V P L+ + +DY++ PD + N T V +E VGH
Sbjct: 738 SKAR--NLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTV-VEKVGH 787
>pdb|3F96|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
pdb|3F96|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
Length = 383
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 25 LNWLWLRPKK----LEKFLRQQGLKGNSYRLLFGDL 56
L+ LW+ K+ L KFL L GN RLLFG +
Sbjct: 47 LDTLWIPNKEYFWGLSKFLGTHWLMGNILRLLFGSM 82
>pdb|3D59|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D59|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D5E|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3D5E|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3F97|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F97|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F98|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|C Chain C, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F9C|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
pdb|3F9C|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
Length = 383
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 25 LNWLWLRPKK----LEKFLRQQGLKGNSYRLLFGDL 56
L+ LW+ K+ L KFL L GN RLLFG +
Sbjct: 47 LDTLWIPNKEYFWGLSKFLGTHWLMGNILRLLFGSM 82
>pdb|3AU7|A Chain A, Crystal Structure Of The Zrd-Deleted Mutant Of Tias In
Complex With Agmatine
Length = 402
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 62 MLKKAKARP--LSLDDDAAVRVTPFLHKLFKDYVDPDE 97
ML K P + +D++ AV++ PF K KD + DE
Sbjct: 104 MLDDEKTNPGAVFVDEELAVKLKPFADKAIKDVLQIDE 141
>pdb|3AMU|A Chain A, Crystal Structure Of The Tias-Trna(Ile2)-Ampcpp-Agmatine
Complex
Length = 440
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 62 MLKKAKARP--LSLDDDAAVRVTPFLHKLFKDYVDPDE 97
ML K P + +D++ AV++ PF K KD + DE
Sbjct: 104 MLDDEKTNPGAVFVDEELAVKLKPFADKAIKDVLQIDE 141
>pdb|1O75|A Chain A, Tp47, The 47-Kilodalton Lipoprotein Of Treponema Pallidum
pdb|1O75|B Chain B, Tp47, The 47-Kilodalton Lipoprotein Of Treponema Pallidum
Length = 415
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 13/48 (27%)
Query: 46 GNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYV 93
G Y FG E+++MLK+A LS H+ F DYV
Sbjct: 218 GTGYHSRFGSDAEASVMLKRADGSELS-------------HREFIDYV 252
>pdb|3V97|A Chain A, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sah Binding
pdb|3V97|B Chain B, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sah Binding
Length = 703
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 33 KKLEKFLRQQGLKGNSYRLLFGDLKESTIMLKK 65
KK EK+ RQ+G++ YRL DL E + + +
Sbjct: 405 KKFEKWARQEGIE--CYRLYDADLPEYNVAVDR 435
>pdb|3V8V|A Chain A, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sam Binding
pdb|3V8V|B Chain B, Crystal Structure Of Bifunctional Methyltransferase Ycby
(Rlmlk) From Escherichia Coli, Sam Binding
Length = 702
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 33 KKLEKFLRQQGLKGNSYRLLFGDLKESTIMLKK 65
KK EK+ RQ+G++ YRL DL E + + +
Sbjct: 404 KKFEKWARQEGIE--CYRLYDADLPEYNVAVDR 434
>pdb|3AMT|A Chain A, Crystal Structure Of The Tias-Trna(Ile2)-Atp Complex
Length = 440
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 73 LDDDAAVRVTPFLHKLFKDYVDPDE 97
+D++ AV++ PF K KD + DE
Sbjct: 117 VDEELAVKLKPFADKAIKDVLQIDE 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,786,808
Number of Sequences: 62578
Number of extensions: 140786
Number of successful extensions: 259
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 256
Number of HSP's gapped (non-prelim): 24
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)