Query 044222
Match_columns 122
No_of_seqs 125 out of 726
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 12:39:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02290 cytokinin trans-hydro 99.7 2E-16 4.3E-21 131.0 13.5 104 16-119 16-124 (516)
2 KOG0156 Cytochrome P450 CYP2 s 99.2 5E-11 1.1E-15 100.1 7.9 72 23-119 15-90 (489)
3 KOG0158 Cytochrome P450 CYP3/C 99.1 2.2E-10 4.8E-15 96.4 7.4 67 35-117 24-94 (499)
4 PTZ00404 cytochrome P450; Prov 99.0 1.9E-09 4.1E-14 88.7 7.3 70 30-117 17-90 (482)
5 PLN00168 Cytochrome P450; Prov 98.8 1.8E-08 4E-13 83.9 7.0 76 28-118 21-100 (519)
6 PLN02183 ferulate 5-hydroxylas 98.8 2.5E-08 5.3E-13 83.1 7.2 70 26-118 25-98 (516)
7 PLN03234 cytochrome P450 83B1; 98.7 5.7E-08 1.2E-12 80.3 7.4 59 43-118 29-91 (499)
8 PLN02971 tryptophan N-hydroxyl 98.7 1.1E-07 2.3E-12 80.0 8.8 59 44-118 59-122 (543)
9 PLN02687 flavonoid 3'-monooxyg 98.7 6E-08 1.3E-12 80.8 6.8 57 43-117 35-95 (517)
10 PLN03112 cytochrome P450 famil 98.6 7.6E-08 1.7E-12 79.9 7.1 57 44-118 34-94 (514)
11 PLN02966 cytochrome P450 83A1 98.6 3.3E-08 7.2E-13 82.0 4.5 58 44-118 31-92 (502)
12 KOG0157 Cytochrome P450 CYP4/C 98.6 2.9E-07 6.2E-12 77.1 10.0 61 40-115 33-97 (497)
13 PLN02500 cytochrome P450 90B1 98.6 3.2E-07 7E-12 75.8 9.1 62 44-118 40-105 (490)
14 PLN02302 ent-kaurenoic acid ox 98.6 3.9E-07 8.4E-12 74.8 9.2 64 44-120 44-113 (490)
15 PLN02394 trans-cinnamate 4-mon 98.6 1.9E-07 4E-12 77.3 7.0 68 25-117 21-92 (503)
16 PLN02196 abscisic acid 8'-hydr 98.6 3.7E-07 8E-12 75.1 8.7 60 42-118 35-98 (463)
17 PLN02774 brassinosteroid-6-oxi 98.4 6.9E-07 1.5E-11 73.5 7.4 62 39-118 27-93 (463)
18 PLN00110 flavonoid 3',5'-hydro 98.3 2.1E-06 4.5E-11 71.7 8.0 63 37-117 26-92 (504)
19 PLN02169 fatty acid (omega-1)- 98.3 4.8E-06 1E-10 69.5 9.8 61 38-117 27-98 (500)
20 PLN02655 ent-kaurene oxidase 98.3 6.1E-07 1.3E-11 73.8 4.4 57 44-117 1-61 (466)
21 PF00067 p450: Cytochrome P450 98.3 1.2E-06 2.6E-11 68.7 5.3 58 45-118 2-63 (463)
22 PLN03141 3-epi-6-deoxocathaste 98.3 1.4E-06 3E-11 71.4 5.2 61 45-118 10-74 (452)
23 PLN02738 carotene beta-ring hy 98.1 1.7E-06 3.8E-11 74.6 3.6 82 31-118 104-194 (633)
24 PLN03195 fatty acid omega-hydr 98.1 1.2E-05 2.5E-10 67.0 7.8 60 39-117 27-93 (516)
25 PLN02987 Cytochrome P450, fami 98.1 1.3E-05 2.9E-10 66.5 7.8 61 45-118 33-97 (472)
26 PLN03018 homomethionine N-hydr 97.8 4.6E-05 9.9E-10 64.4 6.3 79 23-118 22-105 (534)
27 PLN02936 epsilon-ring hydroxyl 96.7 0.0023 5E-08 53.1 4.6 59 45-117 15-78 (489)
28 PLN02648 allene oxide synthase 95.7 0.0091 2E-07 50.2 2.9 60 42-115 17-89 (480)
29 KOG0159 Cytochrome P450 CYP11/ 93.5 0.11 2.5E-06 44.4 4.3 62 43-118 51-117 (519)
30 PLN02426 cytochrome P450, fami 85.8 6 0.00013 33.2 8.4 30 85-117 66-101 (502)
31 COG3898 Uncharacterized membra 83.4 4 8.6E-05 34.6 6.1 50 18-67 55-111 (531)
32 PF07219 HemY_N: HemY protein 79.3 6.8 0.00015 26.3 5.2 26 15-40 27-52 (108)
33 PF13625 Helicase_C_3: Helicas 77.9 8.8 0.00019 26.4 5.6 43 75-117 70-114 (129)
34 KOG0684 Cytochrome P450 [Secon 73.2 21 0.00047 30.6 7.6 29 83-112 55-88 (486)
35 TIGR00540 hemY_coli hemY prote 52.6 38 0.00081 27.6 5.3 22 18-39 55-76 (409)
36 PRK10747 putative protoheme IX 50.2 42 0.00092 27.2 5.3 21 18-38 55-75 (398)
37 KOG3115 Methyltransferase-like 36.8 24 0.00052 27.5 1.7 34 62-96 22-55 (249)
38 PHA03240 envelope glycoprotein 35.3 66 0.0014 25.1 3.9 17 28-44 230-246 (258)
39 PF00558 Vpu: Vpu protein; In 34.5 65 0.0014 21.0 3.3 15 18-32 19-33 (81)
40 PF00737 PsbH: Photosystem II 33.6 14 0.00031 22.2 0.0 16 89-104 12-29 (52)
41 PF09061 Stirrup: Stirrup; In 33.1 43 0.00093 21.2 2.2 24 84-107 11-36 (79)
42 PF15330 SIT: SHP2-interacting 31.9 54 0.0012 22.3 2.7 11 49-59 45-55 (107)
43 PRK02624 psbH photosystem II r 31.4 19 0.00042 22.4 0.4 16 88-103 14-31 (64)
44 PF04995 CcmD: Heme exporter p 31.1 1.1E+02 0.0023 17.4 4.2 18 25-42 22-39 (46)
45 PF05393 Hum_adeno_E3A: Human 29.2 1.4E+02 0.003 20.0 4.1 10 45-54 62-71 (94)
46 COG3763 Uncharacterized protei 28.9 1.6E+02 0.0034 18.8 4.2 18 24-41 18-35 (71)
47 COG3114 CcmD Heme exporter pro 28.2 1.6E+02 0.0034 18.5 4.8 27 10-36 20-46 (67)
48 PF08246 Inhibitor_I29: Cathep 28.1 35 0.00076 19.9 1.1 12 85-96 1-12 (58)
49 PRK01844 hypothetical protein; 27.1 1.7E+02 0.0038 18.6 4.4 18 24-41 18-35 (72)
50 PF10281 Ish1: Putative stress 26.8 63 0.0014 17.5 1.9 18 33-50 7-24 (38)
51 PLN00055 photosystem II reacti 25.7 29 0.00063 22.2 0.5 15 89-103 27-43 (73)
52 TIGR03141 cytochro_ccmD heme e 25.5 1.4E+02 0.003 16.9 4.6 19 24-42 22-40 (45)
53 CHL00066 psbH photosystem II p 24.4 32 0.00069 22.1 0.5 15 89-103 27-43 (73)
54 cd01240 PH_beta-ARK Beta adren 23.7 47 0.001 23.1 1.2 15 82-96 14-28 (116)
55 PF12268 DUF3612: Protein of u 21.2 12 0.00027 27.4 -2.1 71 30-121 15-93 (178)
56 PF08906 DUF1851: Domain of un 21.1 97 0.0021 19.7 2.3 30 83-112 28-62 (80)
57 PF13072 DUF3936: Protein of u 20.5 97 0.0021 17.4 1.9 19 45-63 5-23 (38)
58 PRK00523 hypothetical protein; 20.5 2.5E+02 0.0053 18.0 4.4 18 24-41 19-36 (72)
59 PRK08476 F0F1 ATP synthase sub 20.1 1.5E+02 0.0032 20.7 3.3 13 22-34 21-33 (141)
No 1
>PLN02290 cytokinin trans-hydroxylase
Probab=99.71 E-value=2e-16 Score=131.01 Aligned_cols=104 Identities=17% Similarity=0.321 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCC-CCCCcccchhHHHHHHHhhhCC
Q 044222 16 TLVTWAWMVLNWLWLRPKKLEKFLRQQGLKGNSYRLLFGDLKESTIMLKKAKARPLS-LDDDAAVRVTPFLHKLFKDYVD 94 (122)
Q Consensus 16 ~~~~~~~~~~~~~w~~P~rl~~~l~~qGI~GP~p~~l~GN~~e~~~~~~~a~~~~~~-~~hdi~~~v~p~~~~w~k~YGk 94 (122)
.+.-++++.+.+++++|+++.++|+++|+|||+|.+++||+.++......+..++++ ..+|+..+..+++.+|.++||+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~ 95 (516)
T PLN02290 16 LLLRVAYDTISCYFLTPRRIKKIMERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGK 95 (516)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCC
Confidence 344467888899999999999999999999999999999999986544444344443 2455556666788899999999
Q ss_pred Cc---cCCcceEEEeh-hHHHHHhhcCCc
Q 044222 95 PD---EVPTPLPNHKT-CVALEVVGHPSE 119 (122)
Q Consensus 95 vf---~G~~P~l~Isd-~~ikeIl~K~~~ 119 (122)
+| .|..|.++++| +.+|||+.+.+.
T Consensus 96 i~~~~~g~~~~vvv~dp~~v~~il~~~~~ 124 (516)
T PLN02290 96 RFIYWNGTEPRLCLTETELIKELLTKYNT 124 (516)
T ss_pred eEEEccCCccEEEECCHHHHHHHHhcCCC
Confidence 88 99999999999 999999987644
No 2
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.20 E-value=5e-11 Score=100.05 Aligned_cols=72 Identities=17% Similarity=0.098 Sum_probs=56.2
Q ss_pred HHHHHHHhcchhhHHHHHHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhhCCCc---cCC
Q 044222 23 MVLNWLWLRPKKLEKFLRQQGLKGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVDPD---EVP 99 (122)
Q Consensus 23 ~~~~~~w~~P~rl~~~l~~qGI~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGkvf---~G~ 99 (122)
.++...++++++++ |||+|.|++||+.++... ...-.+++|+++||++| +|+
T Consensus 15 ~~~~~~~~~~~~lP--------PGP~~lPiIGnl~~l~~~-----------------~~h~~~~~ls~~yGpi~tl~lG~ 69 (489)
T KOG0156|consen 15 SLFFKKYRKRRNLP--------PGPPPLPIIGNLHQLGSL-----------------PPHRSFRKLSKKYGPVFTLRLGS 69 (489)
T ss_pred HHHHHhccCCCCCC--------cCCCCCCccccHHHcCCC-----------------chhHHHHHHHHHhCCeEEEEecC
Confidence 34444455555555 899999999999988431 01224789999999999 999
Q ss_pred cceEEEeh-hHHHHHhhcCCc
Q 044222 100 TPLPNHKT-CVALEVVGHPSE 119 (122)
Q Consensus 100 ~P~l~Isd-~~ikeIl~K~~~ 119 (122)
.|.++||| +++||+|++...
T Consensus 70 ~~~Vviss~~~akE~l~~~d~ 90 (489)
T KOG0156|consen 70 VPVVVISSYEAAKEVLVKQDL 90 (489)
T ss_pred ceEEEECCHHHHHHHHHhCCc
Confidence 99999999 999999998654
No 3
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.10 E-value=2.2e-10 Score=96.41 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=52.3
Q ss_pred hHHHHHHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhhCCCc---cCCcceEEEeh-hHH
Q 044222 35 LEKFLRQQGLKGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVDPD---EVPTPLPNHKT-CVA 110 (122)
Q Consensus 35 l~~~l~~qGI~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGkvf---~G~~P~l~Isd-~~i 110 (122)
...+|++.||+||+|.+++||+..+.+... + . .-....|.++ |+++ .|.+|.++|+| |++
T Consensus 24 ~~~yw~rrGi~~~~p~p~~Gn~~~~~~~~~-----~----~------~~~~~~~~~~-~~~~G~y~~~~p~l~v~D~eli 87 (499)
T KOG0158|consen 24 TYSYWRRRGIPGPKPLPFLGNLPGMLKRER-----P----G------DLLLDIYTKY-RPVVGIYEGRQPALLVSDPELI 87 (499)
T ss_pred hhhhhccCCCCCCCCCCcEecHHHHHhccC-----c----H------HHHHHHHhcC-CCEEEEEecCCcceEecCHHHH
Confidence 345899999999999999999999865221 0 0 1123455555 9998 99999999999 999
Q ss_pred HHHhhcC
Q 044222 111 LEVVGHP 117 (122)
Q Consensus 111 keIl~K~ 117 (122)
|+|++|.
T Consensus 88 k~I~ik~ 94 (499)
T KOG0158|consen 88 KEILIKD 94 (499)
T ss_pred HHHHHHh
Confidence 9999986
No 4
>PTZ00404 cytochrome P450; Provisional
Probab=98.96 E-value=1.9e-09 Score=88.67 Aligned_cols=70 Identities=17% Similarity=-0.005 Sum_probs=56.7
Q ss_pred hcchhhHHHHHHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhhCCCc---cCCcceEEEe
Q 044222 30 LRPKKLEKFLRQQGLKGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVDPD---EVPTPLPNHK 106 (122)
Q Consensus 30 ~~P~rl~~~l~~qGI~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGkvf---~G~~P~l~Is 106 (122)
+.+.+..+++++++||||++.+++||+.++.+ ....++++|.++||++| .|..|.++++
T Consensus 17 ~~~~~~~~~~~~~~~pgp~~~p~~G~~~~~~~------------------~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~ 78 (482)
T PTZ00404 17 HNAYKKYKKIHKNELKGPIPIPILGNLHQLGN------------------LPHRDLTKMSKKYGGIFRIWFADLYTVVLS 78 (482)
T ss_pred HHHHHHhhhccCCCCCCCCCCCeeccHhhhcc------------------cHHHHHHHHHHHhCCeeEEEecCCCEEEEC
Confidence 33445566899999999999999999977632 01234689999999998 8889999999
Q ss_pred h-hHHHHHhhcC
Q 044222 107 T-CVALEVVGHP 117 (122)
Q Consensus 107 d-~~ikeIl~K~ 117 (122)
| +.+++|+.++
T Consensus 79 ~p~~~~~il~~~ 90 (482)
T PTZ00404 79 DPILIREMFVDN 90 (482)
T ss_pred CHHHHHHHHHhc
Confidence 9 9999999864
No 5
>PLN00168 Cytochrome P450; Provisional
Probab=98.77 E-value=1.8e-08 Score=83.92 Aligned_cols=76 Identities=16% Similarity=-0.011 Sum_probs=55.2
Q ss_pred HHhcchhhHHHHHHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhhCCCc---cCCcceEE
Q 044222 28 LWLRPKKLEKFLRQQGLKGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVDPD---EVPTPLPN 104 (122)
Q Consensus 28 ~w~~P~rl~~~l~~qGI~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGkvf---~G~~P~l~ 104 (122)
+|+++.+.....++.=.|||++.+++||+..+... ......++.+|.++||++| .|.+|.++
T Consensus 21 ~~~~~~~~~~~~~~~lpPgp~~~pl~G~l~~~~~~---------------~~~~~~~~~~~~~~yG~i~~~~~g~~~~vv 85 (519)
T PLN00168 21 LLGKHGGRGGKKGRRLPPGPPAVPLLGSLVWLTNS---------------SADVEPLLRRLIARYGPVVSLRVGSRLSVF 85 (519)
T ss_pred hhhhhhccCCCCCCCCCcCCCCCcccccHHhhccc---------------cccHHHHHHHHHHHhCCeEEEEcCCccEEE
Confidence 34445554444444556799999999998765210 0112345789999999998 89999999
Q ss_pred Eeh-hHHHHHhhcCC
Q 044222 105 HKT-CVALEVVGHPS 118 (122)
Q Consensus 105 Isd-~~ikeIl~K~~ 118 (122)
++| +++|+||.+..
T Consensus 86 v~dpe~~~~il~~~~ 100 (519)
T PLN00168 86 VADRRLAHAALVERG 100 (519)
T ss_pred ECCHHHHHHHHHhcC
Confidence 999 99999998643
No 6
>PLN02183 ferulate 5-hydroxylase
Probab=98.75 E-value=2.5e-08 Score=83.12 Aligned_cols=70 Identities=16% Similarity=-0.060 Sum_probs=53.3
Q ss_pred HHHHhcchhhHHHHHHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhhCCCc---cCCcce
Q 044222 26 NWLWLRPKKLEKFLRQQGLKGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVDPD---EVPTPL 102 (122)
Q Consensus 26 ~~~w~~P~rl~~~l~~qGI~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGkvf---~G~~P~ 102 (122)
..+|.++++. .+-+|||++.+++||+.++.. + ...++.+|.++||++| .|.+|.
T Consensus 25 ~~~~~~~~~~-----~~~ppgp~~~Pl~G~l~~~~~--------------~----~~~~~~~~~~~yG~i~~~~~g~~~~ 81 (516)
T PLN02183 25 LGLISRLRRR-----LPYPPGPKGLPIIGNMLMMDQ--------------L----THRGLANLAKQYGGLFHMRMGYLHM 81 (516)
T ss_pred HHHHhhccCC-----CCCCcCCCCCCeeccHHhcCC--------------c----chHHHHHHHHHhCCeeEEEeCCcce
Confidence 3345555552 356889999999999876521 0 0235789999999999 899999
Q ss_pred EEEeh-hHHHHHhhcCC
Q 044222 103 PNHKT-CVALEVVGHPS 118 (122)
Q Consensus 103 l~Isd-~~ikeIl~K~~ 118 (122)
++++| +.+|+|+.+.+
T Consensus 82 vvv~dp~~i~~il~~~~ 98 (516)
T PLN02183 82 VAVSSPEVARQVLQVQD 98 (516)
T ss_pred EEeCCHHHHHHHHHhhh
Confidence 99999 99999998643
No 7
>PLN03234 cytochrome P450 83B1; Provisional
Probab=98.68 E-value=5.7e-08 Score=80.25 Aligned_cols=59 Identities=19% Similarity=0.052 Sum_probs=47.6
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhhCCCc---cCCcceEEEeh-hHHHHHhhcCC
Q 044222 43 GLKGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVDPD---EVPTPLPNHKT-CVALEVVGHPS 118 (122)
Q Consensus 43 GI~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGkvf---~G~~P~l~Isd-~~ikeIl~K~~ 118 (122)
.+|||++.+++||+.++.. .+ ...++.+|.++||++| +|++|.++++| |.+|+|+.+..
T Consensus 29 ~pPgp~~~P~iG~~~~~~~-------------~~----~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~ 91 (499)
T PLN03234 29 LPPGPKGLPIIGNLHQMEK-------------FN----PQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQD 91 (499)
T ss_pred CCcCCCCCCeeccHHhcCC-------------CC----ccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCC
Confidence 4699999999999977621 11 1235788999999999 89999999999 99999997654
No 8
>PLN02971 tryptophan N-hydroxylase
Probab=98.67 E-value=1.1e-07 Score=80.02 Aligned_cols=59 Identities=17% Similarity=0.110 Sum_probs=47.0
Q ss_pred CCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhhC-CCc---cCCcceEEEeh-hHHHHHhhcCC
Q 044222 44 LKGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYV-DPD---EVPTPLPNHKT-CVALEVVGHPS 118 (122)
Q Consensus 44 I~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YG-kvf---~G~~P~l~Isd-~~ikeIl~K~~ 118 (122)
.|||++.+++||+.++.. + +....++++|.++|| ++| +|++|.++|+| +.+||||.++.
T Consensus 59 PPGP~~lPiiGnl~~l~~--------------~--~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~ 122 (543)
T PLN02971 59 PPGPTGFPIVGMIPAMLK--------------N--RPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQD 122 (543)
T ss_pred CcCCCCCCcccchHHhcc--------------C--CcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcc
Confidence 579999999999987621 0 001235789999999 677 89999999999 99999998864
No 9
>PLN02687 flavonoid 3'-monooxygenase
Probab=98.66 E-value=6e-08 Score=80.84 Aligned_cols=57 Identities=14% Similarity=-0.038 Sum_probs=46.8
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhhCCCc---cCCcceEEEeh-hHHHHHhhcC
Q 044222 43 GLKGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVDPD---EVPTPLPNHKT-CVALEVVGHP 117 (122)
Q Consensus 43 GI~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGkvf---~G~~P~l~Isd-~~ikeIl~K~ 117 (122)
..|||++.+++||+.++.+ + ...++.+|.++||++| .|.+|.++++| +.+|+||.+.
T Consensus 35 ~pPgp~~~P~iG~~~~~~~--------------~----~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~~~ 95 (517)
T PLN02687 35 LPPGPRGWPVLGNLPQLGP--------------K----PHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLRTH 95 (517)
T ss_pred CCccCCCCCccccHHhcCC--------------c----hhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHHhc
Confidence 4679999999999876621 1 1245789999999999 89999999999 9999999864
No 10
>PLN03112 cytochrome P450 family protein; Provisional
Probab=98.65 E-value=7.6e-08 Score=79.87 Aligned_cols=57 Identities=14% Similarity=-0.023 Sum_probs=46.1
Q ss_pred CCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhhCCCc---cCCcceEEEeh-hHHHHHhhcCC
Q 044222 44 LKGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVDPD---EVPTPLPNHKT-CVALEVVGHPS 118 (122)
Q Consensus 44 I~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGkvf---~G~~P~l~Isd-~~ikeIl~K~~ 118 (122)
.|||++.+++||+.++.+ + ..-++.+|.++||++| .|..|.++++| +.+|+|+.+.+
T Consensus 34 ppgp~~~pl~G~~~~~~~--------------~----~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~ 94 (514)
T PLN03112 34 PPGPPRWPIVGNLLQLGP--------------L----PHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQD 94 (514)
T ss_pred ccCCCCCCeeeeHHhcCC--------------c----hHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCC
Confidence 589999999999976521 0 0124678999999999 88899999999 99999997654
No 11
>PLN02966 cytochrome P450 83A1
Probab=98.63 E-value=3.3e-08 Score=81.99 Aligned_cols=58 Identities=16% Similarity=0.029 Sum_probs=46.9
Q ss_pred CCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhhCCCc---cCCcceEEEeh-hHHHHHhhcCC
Q 044222 44 LKGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVDPD---EVPTPLPNHKT-CVALEVVGHPS 118 (122)
Q Consensus 44 I~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGkvf---~G~~P~l~Isd-~~ikeIl~K~~ 118 (122)
+|||++.+++||+.++.. . ....++.+|.++||++| +|+.|.++++| |.+++|+.+.+
T Consensus 31 ppgp~~~p~~G~l~~l~~-------------~----~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~ 92 (502)
T PLN02966 31 PPGPSPLPVIGNLLQLQK-------------L----NPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQD 92 (502)
T ss_pred CcCCCCCCeeccHHhcCC-------------C----ChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCc
Confidence 589999999999977621 0 12345789999999999 89999999999 99999997643
No 12
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=98.62 E-value=2.9e-07 Score=77.09 Aligned_cols=61 Identities=18% Similarity=0.112 Sum_probs=52.2
Q ss_pred HHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhhCCCc---cCCcceEEEeh-hHHHHHhh
Q 044222 40 RQQGLKGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVDPD---EVPTPLPNHKT-CVALEVVG 115 (122)
Q Consensus 40 ~~qGI~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGkvf---~G~~P~l~Isd-~~ikeIl~ 115 (122)
+.++.+||++.|++||..++..+. .....+..++..+||++| +|.+|.++++| +.+++||.
T Consensus 33 ~~~~~~gp~~~P~iG~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~ 97 (497)
T KOG0157|consen 33 KKKLPPGPPGWPLIGNLLEFLKPL---------------EEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILK 97 (497)
T ss_pred HhccCCCCCCCCcccchHHhhcch---------------hHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHh
Confidence 788999999999999999985421 233566789999999888 99999999999 99999994
No 13
>PLN02500 cytochrome P450 90B1
Probab=98.58 E-value=3.2e-07 Score=75.81 Aligned_cols=62 Identities=10% Similarity=0.036 Sum_probs=46.5
Q ss_pred CCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhhCCCc---cCCcceEEEeh-hHHHHHhhcCC
Q 044222 44 LKGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVDPD---EVPTPLPNHKT-CVALEVVGHPS 118 (122)
Q Consensus 44 I~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGkvf---~G~~P~l~Isd-~~ikeIl~K~~ 118 (122)
.|||++.+++||+.++.... .|+ +...++.+|.++||++| .|.+|.++++| |.+|+||.+..
T Consensus 40 PPgp~~~PiiGn~~~~~~~~----------~~~---~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~ 105 (490)
T PLN02500 40 PPGNMGWPFLGETIGYLKPY----------SAT---SIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEG 105 (490)
T ss_pred CCCCcCCCchhhHHHHHhhc----------ccC---ChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCC
Confidence 35999999999986542100 011 11234678999999999 79999999999 99999998764
No 14
>PLN02302 ent-kaurenoic acid oxidase
Probab=98.57 E-value=3.9e-07 Score=74.75 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=47.8
Q ss_pred CCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhhCC--Cc---cCCcceEEEeh-hHHHHHhhcC
Q 044222 44 LKGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVD--PD---EVPTPLPNHKT-CVALEVVGHP 117 (122)
Q Consensus 44 I~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGk--vf---~G~~P~l~Isd-~~ikeIl~K~ 117 (122)
.|||++.+++||+.++..... ..| ...++.++.++||+ +| .|..|.++++| |.+++|+.++
T Consensus 44 pPgp~~~PilG~l~~~~~~~~---------~~~----~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~ 110 (490)
T PLN02302 44 PPGDLGWPVIGNMWSFLRAFK---------SSN----PDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD 110 (490)
T ss_pred cCCCCCCCccccHHHHHHhcc---------cCC----cHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC
Confidence 378888999999988743110 011 12346899999997 46 78899999999 9999999887
Q ss_pred Ccc
Q 044222 118 SEF 120 (122)
Q Consensus 118 ~~~ 120 (122)
+.|
T Consensus 111 ~~f 113 (490)
T PLN02302 111 DAF 113 (490)
T ss_pred Ccc
Confidence 654
No 15
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=98.55 E-value=1.9e-07 Score=77.27 Aligned_cols=68 Identities=21% Similarity=0.064 Sum_probs=51.7
Q ss_pred HHHHHhcchhhHHHHHHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhhCCCc---cCCcc
Q 044222 25 LNWLWLRPKKLEKFLRQQGLKGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVDPD---EVPTP 101 (122)
Q Consensus 25 ~~~~w~~P~rl~~~l~~qGI~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGkvf---~G~~P 101 (122)
++.+.++|.+ -+|||++.+++||+.++.. +. ....+++|.++||++| .|.+|
T Consensus 21 ~~~~~~~~~~--------~pPgp~~~p~~g~l~~~~~--------------~~---~~~~~~~~~~~yG~v~~i~~g~~~ 75 (503)
T PLN02394 21 VSKLRGKKLK--------LPPGPAAVPIFGNWLQVGD--------------DL---NHRNLAEMAKKYGDVFLLRMGQRN 75 (503)
T ss_pred HHHHhcCcCC--------CCcCCCCCCeeeeHHhcCC--------------Cc---hhHHHHHHHHHhCCeEEEEcCCee
Confidence 4555556643 2489999999999976621 10 1235689999999998 79999
Q ss_pred eEEEeh-hHHHHHhhcC
Q 044222 102 LPNHKT-CVALEVVGHP 117 (122)
Q Consensus 102 ~l~Isd-~~ikeIl~K~ 117 (122)
.++++| |.+++|+.+.
T Consensus 76 ~v~v~dpe~i~~il~~~ 92 (503)
T PLN02394 76 LVVVSSPELAKEVLHTQ 92 (503)
T ss_pred EEEeCCHHHHHHHHHhC
Confidence 999999 9999999754
No 16
>PLN02196 abscisic acid 8'-hydroxylase
Probab=98.55 E-value=3.7e-07 Score=75.15 Aligned_cols=60 Identities=17% Similarity=-0.027 Sum_probs=46.9
Q ss_pred cCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhhCCCc---cCCcceEEEeh-hHHHHHhhcC
Q 044222 42 QGLKGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVDPD---EVPTPLPNHKT-CVALEVVGHP 117 (122)
Q Consensus 42 qGI~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGkvf---~G~~P~l~Isd-~~ikeIl~K~ 117 (122)
.+.|||++.+++||+.++.. .| + ..++.+|.++||++| .|.+|.++++| +++++|+.++
T Consensus 35 ~~Ppgp~~~P~iG~~~~~~~-------------~~--~--~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~ 97 (463)
T PLN02196 35 PLPPGTMGWPYVGETFQLYS-------------QD--P--NVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTK 97 (463)
T ss_pred CCCCCCCCCCccchHHHHHh-------------cC--H--HHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCC
Confidence 56677777899999877522 11 0 124679999999998 68999999999 9999999876
Q ss_pred C
Q 044222 118 S 118 (122)
Q Consensus 118 ~ 118 (122)
.
T Consensus 98 ~ 98 (463)
T PLN02196 98 S 98 (463)
T ss_pred C
Confidence 4
No 17
>PLN02774 brassinosteroid-6-oxidase
Probab=98.44 E-value=6.9e-07 Score=73.46 Aligned_cols=62 Identities=16% Similarity=0.106 Sum_probs=48.5
Q ss_pred HHHcCC-CCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhhCCCc---cCCcceEEEeh-hHHHHH
Q 044222 39 LRQQGL-KGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVDPD---EVPTPLPNHKT-CVALEV 113 (122)
Q Consensus 39 l~~qGI-~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGkvf---~G~~P~l~Isd-~~ikeI 113 (122)
+++.|. |||++.+++||..++.+- . ..++++|.++||++| +|.+|.++|+| +.+|+|
T Consensus 27 ~~r~~~ppgp~~~P~~G~~~~~~~~-------------~-----~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~i 88 (463)
T PLN02774 27 YSKKGLPPGTMGWPLFGETTEFLKQ-------------G-----PDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYI 88 (463)
T ss_pred cCCCCCCCCCCCCCchhhHHHHHHh-------------h-----HHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHH
Confidence 345566 588889999998776320 0 124689999999999 78999999999 999999
Q ss_pred hhcCC
Q 044222 114 VGHPS 118 (122)
Q Consensus 114 l~K~~ 118 (122)
+.+..
T Consensus 89 l~~~~ 93 (463)
T PLN02774 89 LMNEG 93 (463)
T ss_pred HcCCC
Confidence 97643
No 18
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=98.33 E-value=2.1e-06 Score=71.65 Aligned_cols=63 Identities=16% Similarity=-0.076 Sum_probs=48.8
Q ss_pred HHHHHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhhCCCc---cCCcceEEEeh-hHHHH
Q 044222 37 KFLRQQGLKGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVDPD---EVPTPLPNHKT-CVALE 112 (122)
Q Consensus 37 ~~l~~qGI~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGkvf---~G~~P~l~Isd-~~ike 112 (122)
+...++-.|||++.+++||+..+.+ + ...++.+|.++||++| +|.+|.++++| +.+++
T Consensus 26 ~~~~~~~pPgp~~~Pl~G~l~~~~~--------------~----~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~ 87 (504)
T PLN00110 26 PKPSRKLPPGPRGWPLLGALPLLGN--------------M----PHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARA 87 (504)
T ss_pred hcccCCCcccCCCCCeeechhhcCC--------------c----hHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHH
Confidence 3444455689999999999866521 1 0134789999999999 79999999999 99999
Q ss_pred HhhcC
Q 044222 113 VVGHP 117 (122)
Q Consensus 113 Il~K~ 117 (122)
||.+.
T Consensus 88 vl~~~ 92 (504)
T PLN00110 88 FLKTL 92 (504)
T ss_pred HHHhc
Confidence 99864
No 19
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=98.32 E-value=4.8e-06 Score=69.52 Aligned_cols=61 Identities=8% Similarity=-0.143 Sum_probs=46.2
Q ss_pred HHHHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhh----hCCCc------cCCcceEEEeh
Q 044222 38 FLRQQGLKGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKD----YVDPD------EVPTPLPNHKT 107 (122)
Q Consensus 38 ~l~~qGI~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~----YGkvf------~G~~P~l~Isd 107 (122)
.||+.|+|||++.+++||+.++... + .+ +++|..+ ||..| +|.+|.++|+|
T Consensus 27 ~~~~~~~p~p~~~pl~G~~~~~~~~------------~---~~----~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~d 87 (500)
T PLN02169 27 HKKPHGQPILKNWPFLGMLPGMLHQ------------I---PR----IYDWTVEVLEASNLTFYFKGPWLSGTDMLFTAD 87 (500)
T ss_pred HhccCCCCCCCCCCcccchHHHHHc------------c---Cc----HHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcC
Confidence 5677799999999999999776320 0 01 3455444 78654 58999999999
Q ss_pred -hHHHHHhhcC
Q 044222 108 -CVALEVVGHP 117 (122)
Q Consensus 108 -~~ikeIl~K~ 117 (122)
|.+|+||.+.
T Consensus 88 pe~i~~il~~~ 98 (500)
T PLN02169 88 PKNIHHILSSN 98 (500)
T ss_pred HHHHHHHHhhC
Confidence 9999999874
No 20
>PLN02655 ent-kaurene oxidase
Probab=98.32 E-value=6.1e-07 Score=73.85 Aligned_cols=57 Identities=12% Similarity=-0.034 Sum_probs=46.7
Q ss_pred CCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhhCCCc---cCCcceEEEeh-hHHHHHhhcC
Q 044222 44 LKGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVDPD---EVPTPLPNHKT-CVALEVVGHP 117 (122)
Q Consensus 44 I~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGkvf---~G~~P~l~Isd-~~ikeIl~K~ 117 (122)
.|||++.+++||+.++.. .+ ...++++|.++||++| .|.+|.++|+| +.+|+||.|.
T Consensus 1 ppgp~~lP~iG~l~~~~~------------~~-----~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~ 61 (466)
T PLN02655 1 VPAVPGLPVIGNLLQLKE------------KK-----PHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTK 61 (466)
T ss_pred CcCCCCCCccccHHHcCC------------Cc-----hhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhc
Confidence 379999999999987621 00 1245789999999998 89999999999 9999999874
No 21
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=98.29 E-value=1.2e-06 Score=68.73 Aligned_cols=58 Identities=17% Similarity=0.121 Sum_probs=48.4
Q ss_pred CCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhhCCCc---cCCcceEEEeh-hHHHHHhhcCC
Q 044222 45 KGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVDPD---EVPTPLPNHKT-CVALEVVGHPS 118 (122)
Q Consensus 45 ~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGkvf---~G~~P~l~Isd-~~ikeIl~K~~ 118 (122)
|||++.+++||+.++.+ . ....-++++|.++||++| .|.+|.++|+| +.+++|+.+++
T Consensus 2 pgp~~~p~~G~~~~~~~-~---------------~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~ 63 (463)
T PF00067_consen 2 PGPPPLPILGNLLQFRR-K---------------GNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRS 63 (463)
T ss_dssp SCSSSBTTTBTHHHHHT-T---------------HHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTT
T ss_pred cCCCCcCceeEHHHhcC-C---------------CcHHHHHHHHHHHhCCEEEEeEecccccccccchhhcccccccc
Confidence 78999999999999853 0 111334789999999999 88899999999 99999998885
No 22
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=98.26 E-value=1.4e-06 Score=71.41 Aligned_cols=61 Identities=18% Similarity=0.046 Sum_probs=46.9
Q ss_pred CCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhhCCCc---cCCcceEEEeh-hHHHHHhhcCC
Q 044222 45 KGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVDPD---EVPTPLPNHKT-CVALEVVGHPS 118 (122)
Q Consensus 45 ~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGkvf---~G~~P~l~Isd-~~ikeIl~K~~ 118 (122)
|||.+.+++||+.++.. .+ . .+| ...++++|.++||++| .|.+|.++++| +.+|++|.+.+
T Consensus 10 pg~~~~P~iG~~~~l~~---~~----~--~~~----~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~ 74 (452)
T PLN03141 10 KGSLGWPVIGETLDFIS---CA----Y--SSR----PESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDG 74 (452)
T ss_pred CCCCCCCchhhHHHHHh---hc----c--cCC----hHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCC
Confidence 68888999999987632 00 0 011 1234679999999999 89999999999 99999998754
No 23
>PLN02738 carotene beta-ring hydroxylase
Probab=98.14 E-value=1.7e-06 Score=74.64 Aligned_cols=82 Identities=17% Similarity=0.093 Sum_probs=53.5
Q ss_pred cchhhHHHHHHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCC-CC---CCccc-chhHHHHHHHhhhCCCc---cCCcce
Q 044222 31 RPKKLEKFLRQQGLKGNSYRLLFGDLKESTIMLKKAKARPLS-LD---DDAAV-RVTPFLHKLFKDYVDPD---EVPTPL 102 (122)
Q Consensus 31 ~P~rl~~~l~~qGI~GP~p~~l~GN~~e~~~~~~~a~~~~~~-~~---hdi~~-~v~p~~~~w~k~YGkvf---~G~~P~ 102 (122)
.|..++..|+|+|+|||+.-.+.+..-.+.. .+.++ .- +.+.. .....+++|.++||++| +|+.|.
T Consensus 104 ~~~~~~~~~~~~~~pgp~laa~t~~ye~y~~------~~~~~~~~G~l~~i~~g~~~~~l~~lh~kYGpI~ri~lGp~~~ 177 (633)
T PLN02738 104 FPATLRNGLAKLGPPGELLAFLFTWVEAGEG------YPKIPEAKGSISAVRGEAFFIPLYELFLTYGGIFRLTFGPKSF 177 (633)
T ss_pred chHHHHhhhhhCCCCCchHHHHHcccccccc------cccCccccCcHHHhcCchHHHHHHHHHHHhCCEEEEEeCCCCE
Confidence 4778889999999999976544332211100 00000 00 01111 12244789999999999 799999
Q ss_pred EEEeh-hHHHHHhhcCC
Q 044222 103 PNHKT-CVALEVVGHPS 118 (122)
Q Consensus 103 l~Isd-~~ikeIl~K~~ 118 (122)
++|+| +.+++|+.+.+
T Consensus 178 vvIsDpe~i~eIl~~~~ 194 (633)
T PLN02738 178 LIVSDPSIAKHILRDNS 194 (633)
T ss_pred EEECCHHHHHHHHhhCc
Confidence 99999 99999998654
No 24
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=98.11 E-value=1.2e-05 Score=66.99 Aligned_cols=60 Identities=15% Similarity=0.060 Sum_probs=46.9
Q ss_pred HHHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhh---CCCc---cCCcceEEEeh-hHHH
Q 044222 39 LRQQGLKGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDY---VDPD---EVPTPLPNHKT-CVAL 111 (122)
Q Consensus 39 l~~qGI~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~Y---Gkvf---~G~~P~l~Isd-~~ik 111 (122)
|+++++|||++.+++||+.++.. .| ..+++|.++| |++| .|.+|.++++| +.++
T Consensus 27 ~~~~~~pgp~~~p~~G~~~~~~~------------~~-------~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~ 87 (516)
T PLN03195 27 WSQRNRKGPKSWPIIGAALEQLK------------NY-------DRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVE 87 (516)
T ss_pred hhccccCCCCCCCeecchHHHHh------------cc-------chHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHH
Confidence 44557899999999999865421 01 1246888888 8888 88899999999 9999
Q ss_pred HHhhcC
Q 044222 112 EVVGHP 117 (122)
Q Consensus 112 eIl~K~ 117 (122)
+|+.++
T Consensus 88 ~il~~~ 93 (516)
T PLN03195 88 HVLKTN 93 (516)
T ss_pred HHHhhC
Confidence 999875
No 25
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=98.09 E-value=1.3e-05 Score=66.53 Aligned_cols=61 Identities=11% Similarity=0.067 Sum_probs=45.6
Q ss_pred CCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhhCCCc---cCCcceEEEeh-hHHHHHhhcCC
Q 044222 45 KGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVDPD---EVPTPLPNHKT-CVALEVVGHPS 118 (122)
Q Consensus 45 ~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGkvf---~G~~P~l~Isd-~~ikeIl~K~~ 118 (122)
|||.+.+++||+.++..-. . ..| ...++.+|.++||++| .|.+|.++++| +.+|+|+.+..
T Consensus 33 pgp~~~P~iG~~~~~~~~~--~-------~~~----~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~ 97 (472)
T PLN02987 33 PGSLGLPLVGETLQLISAY--K-------TEN----PEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEG 97 (472)
T ss_pred CCCcCCCchhhHHHHHhhc--c-------cCC----hHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCC
Confidence 5888889999998763200 0 011 1234678999999999 78899999999 99999998753
No 26
>PLN03018 homomethionine N-hydroxylase
Probab=97.82 E-value=4.6e-05 Score=64.39 Aligned_cols=79 Identities=20% Similarity=0.215 Sum_probs=52.9
Q ss_pred HHHHHHHhcchhhHHHHHHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhh-CCCc---cC
Q 044222 23 MVLNWLWLRPKKLEKFLRQQGLKGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDY-VDPD---EV 98 (122)
Q Consensus 23 ~~~~~~w~~P~rl~~~l~~qGI~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~Y-Gkvf---~G 98 (122)
.++....-||..-.+. ...=.|||++.+++||+.++.. .+ +. ..+.+++.++| |++| .|
T Consensus 22 ~~~~~~~~~~~~~~~~-~~~~PPgp~~~P~iGnl~~l~~-------------~~--~~-~~~~~~~~~~~~g~i~~~~lg 84 (534)
T PLN03018 22 TLLGRILSRPSKTKDR-SRQLPPGPPGWPILGNLPELIM-------------TR--PR-SKYFHLAMKELKTDIACFNFA 84 (534)
T ss_pred HHHHHHHhhhcccCCC-CCCCCcCCCCCCeeccHHHhcc-------------CC--Cc-chhHHHHHHHhCCCeEEEEeC
Confidence 4555555556432211 1222679999999999987621 00 00 12356777776 7998 89
Q ss_pred CcceEEEeh-hHHHHHhhcCC
Q 044222 99 PTPLPNHKT-CVALEVVGHPS 118 (122)
Q Consensus 99 ~~P~l~Isd-~~ikeIl~K~~ 118 (122)
.+|.++|+| |.+||||.+.+
T Consensus 85 ~~~~vvvsdpe~ikevl~~~~ 105 (534)
T PLN03018 85 GTHTITINSDEIAREAFRERD 105 (534)
T ss_pred CccEEEECCHHHHHHHHHhCc
Confidence 999999999 99999998754
No 27
>PLN02936 epsilon-ring hydroxylase
Probab=96.72 E-value=0.0023 Score=53.15 Aligned_cols=59 Identities=15% Similarity=0.032 Sum_probs=46.1
Q ss_pred CCCCCccCCCCHHHHHH-HHHHhhcCCCCCCCCcccchhHHHHHHHhhhCCCc---cCCcceEEEeh-hHHHHHhhcC
Q 044222 45 KGNSYRLLFGDLKESTI-MLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVDPD---EVPTPLPNHKT-CVALEVVGHP 117 (122)
Q Consensus 45 ~GP~p~~l~GN~~e~~~-~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGkvf---~G~~P~l~Isd-~~ikeIl~K~ 117 (122)
.|-.+.|++|+..|... +++ .+....+.+|.++||++| .|..|.++++| |.+++|+.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~ 78 (489)
T PLN02936 15 GDDSGIPVADAKLEDVTDLLG--------------GALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNY 78 (489)
T ss_pred CCCCCCccHHhHHhhHHHHhc--------------cHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhc
Confidence 67888899999877533 221 122345789999999998 88899999999 9999999764
No 28
>PLN02648 allene oxide synthase
Probab=95.65 E-value=0.0091 Score=50.16 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=42.7
Q ss_pred cCCCCCCCccCCCCHHHHHH-HHHHhhcCCCCCCCCcccchhHHHHHHHhhhCC-Cc---cCCcce-------EEEeh-h
Q 044222 42 QGLKGNSYRLLFGDLKESTI-MLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVD-PD---EVPTPL-------PNHKT-C 108 (122)
Q Consensus 42 qGI~GP~p~~l~GN~~e~~~-~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGk-vf---~G~~P~-------l~Isd-~ 108 (122)
+..||+...+++|...++.+ ... .| ...++.+..++||+ +| ++..|. ++++| |
T Consensus 17 ~~PPg~~g~P~iG~~~~~~~~~~~----------~~----~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e 82 (480)
T PLN02648 17 REIPGSYGLPFLGAIKDRLDYFYF----------QG----EDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQK 82 (480)
T ss_pred CCCCCCCCCcCcchhhhhhhHHHh----------cC----hHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCC
Confidence 34577778899999887533 110 11 13567888999998 99 555544 99999 9
Q ss_pred HHHHHhh
Q 044222 109 VALEVVG 115 (122)
Q Consensus 109 ~ikeIl~ 115 (122)
.++.||.
T Consensus 83 ~~~~v~~ 89 (480)
T PLN02648 83 SFPVLFD 89 (480)
T ss_pred ceeeeec
Confidence 9999986
No 29
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.47 E-value=0.11 Score=44.42 Aligned_cols=62 Identities=11% Similarity=-0.077 Sum_probs=45.3
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhhCCCc----cCCcceEEEeh-hHHHHHhhcC
Q 044222 43 GLKGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVDPD----EVPTPLPNHKT-CVALEVVGHP 117 (122)
Q Consensus 43 GI~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGkvf----~G~~P~l~Isd-~~ikeIl~K~ 117 (122)
-||||++..++|+.....+... ++ +.-+.....++||++| +|+...|.+.| |.+..++-.+
T Consensus 51 ~IP~p~~~~~l~~l~~~~~~~~----------~~----lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~E 116 (519)
T KOG0159|consen 51 EIPGPKGLPFLGLLWIWRAGGA----------TK----LHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNE 116 (519)
T ss_pred hcCCCCCccHHHHHHHHHhhhh----------hH----HHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcC
Confidence 4789999999998875322110 11 1223578999999999 89999999999 8888887655
Q ss_pred C
Q 044222 118 S 118 (122)
Q Consensus 118 ~ 118 (122)
+
T Consensus 117 G 117 (519)
T KOG0159|consen 117 G 117 (519)
T ss_pred C
Confidence 4
No 30
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=85.77 E-value=6 Score=33.21 Aligned_cols=30 Identities=3% Similarity=-0.203 Sum_probs=21.6
Q ss_pred HHHHHhhhCC-Cc----cCCcceEEEeh-hHHHHHhhcC
Q 044222 85 LHKLFKDYVD-PD----EVPTPLPNHKT-CVALEVVGHP 117 (122)
Q Consensus 85 ~~~w~k~YGk-vf----~G~~P~l~Isd-~~ikeIl~K~ 117 (122)
+.++.++|++ ++ .|. ++++| |.+++|+.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~---iv~~dpe~i~~vl~~~ 101 (502)
T PLN02426 66 YAHLLRRSPTGTIHVHVLGN---TITANPENVEYMLKTR 101 (502)
T ss_pred HHHHHHhCCCcEEEEecCCc---EEecCHHHHHHHHhhC
Confidence 4457777773 33 343 89999 9999999764
No 31
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=83.42 E-value=4 Score=34.61 Aligned_cols=50 Identities=24% Similarity=0.488 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhcchhhHHHHH----HcCCCCCCCccC---CCCHHHHHHHHHHhh
Q 044222 18 VTWAWMVLNWLWLRPKKLEKFLR----QQGLKGNSYRLL---FGDLKESTIMLKKAK 67 (122)
Q Consensus 18 ~~~~~~~~~~~w~~P~rl~~~l~----~qGI~GP~p~~l---~GN~~e~~~~~~~a~ 67 (122)
+.++|.++.++|-.|+...+|++ +||++.-.--++ -||-.+-++|-++++
T Consensus 55 v~llwwlv~~iw~sP~t~~Ryfr~rKRdrgyqALStGliAagAGda~lARkmt~~~~ 111 (531)
T COG3898 55 VLLLWWLVRSIWESPYTARRYFRERKRDRGYQALSTGLIAAGAGDASLARKMTARAS 111 (531)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhhhhhhhccCchHHHHHHHHHHH
Confidence 34578899999999999988774 678876655555 488777777766543
No 32
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=79.29 E-value=6.8 Score=26.28 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHH
Q 044222 15 VTLVTWAWMVLNWLWLRPKKLEKFLR 40 (122)
Q Consensus 15 ~~~~~~~~~~~~~~w~~P~rl~~~l~ 40 (122)
++++.++++++..+|--|.+..+.++
T Consensus 27 ~~~l~ll~~ll~~~~~~p~~~~~~~~ 52 (108)
T PF07219_consen 27 FVVLYLLLRLLRRLLSLPSRVRRWRR 52 (108)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 34445677888888888877754433
No 33
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=77.88 E-value=8.8 Score=26.41 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=31.0
Q ss_pred CCcccchhHHHHHHHhhhCCCc-cCCcceEEEeh-hHHHHHhhcC
Q 044222 75 DDAAVRVTPFLHKLFKDYVDPD-EVPTPLPNHKT-CVALEVVGHP 117 (122)
Q Consensus 75 hdi~~~v~p~~~~w~k~YGkvf-~G~~P~l~Isd-~~ikeIl~K~ 117 (122)
+++-+.+.-...+|.++||++- .+..-.+...| +++.+++..|
T Consensus 70 ~~lP~~v~~~i~~w~~~~g~v~l~~~~~~l~~~d~~~l~~l~~~~ 114 (129)
T PF13625_consen 70 NPLPQNVEQSIEDWARRYGRVRLYKGAYLLECDDPELLDELLADP 114 (129)
T ss_pred CCCCHHHHHHHHHHHHhcCCEEEecCeEEEEECCHHHHHHHHhCh
Confidence 3444455556889999999998 54466677777 8888876554
No 34
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.17 E-value=21 Score=30.55 Aligned_cols=29 Identities=17% Similarity=-0.256 Sum_probs=19.5
Q ss_pred HHHHHHHhhhCCCc----cCCcceEEEeh-hHHHH
Q 044222 83 PFLHKLFKDYVDPD----EVPTPLPNHKT-CVALE 112 (122)
Q Consensus 83 p~~~~w~k~YGkvf----~G~~P~l~Isd-~~ike 112 (122)
.++.+.++|||++| .|..-+. +.| +-..-
T Consensus 55 eFl~~~~~K~GdVFTv~l~Gk~~Tf-ll~p~~~~~ 88 (486)
T KOG0684|consen 55 EFLRECRKKYGDVFTVLLMGKYMTF-LLGPEGYDF 88 (486)
T ss_pred HHHHHHHHhcCCeEEEEEcCcEEEE-EeCchhhHH
Confidence 46889999999999 5555444 445 43333
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=52.64 E-value=38 Score=27.55 Aligned_cols=22 Identities=5% Similarity=-0.123 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhcchhhHHHH
Q 044222 18 VTWAWMVLNWLWLRPKKLEKFL 39 (122)
Q Consensus 18 ~~~~~~~~~~~w~~P~rl~~~l 39 (122)
+.++++++..+|--|.+.++.+
T Consensus 55 ~~~~~~l~~~~~~~p~~~~~~~ 76 (409)
T TIGR00540 55 IFAFEWGLRRFFRLGAHSRGWF 76 (409)
T ss_pred HHHHHHHHHHHHHccHHHHHHH
Confidence 3456778887877776655443
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=50.22 E-value=42 Score=27.22 Aligned_cols=21 Identities=5% Similarity=0.014 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhcchhhHHH
Q 044222 18 VTWAWMVLNWLWLRPKKLEKF 38 (122)
Q Consensus 18 ~~~~~~~~~~~w~~P~rl~~~ 38 (122)
+.++++++..+|-.|.+.+..
T Consensus 55 ~~~~~~~~~~~~~~p~~~~~~ 75 (398)
T PRK10747 55 LFAIEWLLRRIFRTGARTRGW 75 (398)
T ss_pred HHHHHHHHHHHHhcchhhhHH
Confidence 335567777777666655443
No 37
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=36.81 E-value=24 Score=27.45 Aligned_cols=34 Identities=29% Similarity=0.312 Sum_probs=26.7
Q ss_pred HHHHhhcCCCCCCCCcccchhHHHHHHHhhhCCCc
Q 044222 62 MLKKAKARPLSLDDDAAVRVTPFLHKLFKDYVDPD 96 (122)
Q Consensus 62 ~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~YGkvf 96 (122)
-|+.|+|+|+. +|++---+.|....|++-|.+-+
T Consensus 22 YRQRAHsNP~s-Dh~l~yPvsP~~mDWS~~yp~f~ 55 (249)
T KOG3115|consen 22 YRQRAHSNPLS-DHTLEYPVSPQEMDWSKYYPDFR 55 (249)
T ss_pred HHHHhhcCCCc-cCcccCCCChHhCcHHHhhhhhh
Confidence 46678999985 57777778888889999887544
No 38
>PHA03240 envelope glycoprotein M; Provisional
Probab=35.31 E-value=66 Score=25.08 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=13.1
Q ss_pred HHhcchhhHHHHHHcCC
Q 044222 28 LWLRPKKLEKFLRQQGL 44 (122)
Q Consensus 28 ~w~~P~rl~~~l~~qGI 44 (122)
.+.-|.|+...|+.+|-
T Consensus 230 cfKiPQKl~dKw~~~k~ 246 (258)
T PHA03240 230 FFKIPQKLFDKWDLHGS 246 (258)
T ss_pred HHhccHHHHHHHhhhcc
Confidence 34559999889988875
No 39
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=34.55 E-value=65 Score=21.03 Aligned_cols=15 Identities=7% Similarity=0.257 Sum_probs=4.1
Q ss_pred HHHHHHHHHHHHhcc
Q 044222 18 VTWAWMVLNWLWLRP 32 (122)
Q Consensus 18 ~~~~~~~~~~~w~~P 32 (122)
..++|.+++..+.+-
T Consensus 19 aIvvW~iv~ieYrk~ 33 (81)
T PF00558_consen 19 AIVVWTIVYIEYRKI 33 (81)
T ss_dssp HHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555555544433
No 40
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=33.59 E-value=14 Score=22.17 Aligned_cols=16 Identities=25% Similarity=0.152 Sum_probs=10.9
Q ss_pred HhhhCCCc--cCCcceEE
Q 044222 89 FKDYVDPD--EVPTPLPN 104 (122)
Q Consensus 89 ~k~YGkvf--~G~~P~l~ 104 (122)
-.+|||+- ||++|...
T Consensus 12 NSeyGkVaPGWGTtplM~ 29 (52)
T PF00737_consen 12 NSEYGKVAPGWGTTPLMG 29 (52)
T ss_dssp CCSTT--BSTTTTHHHHH
T ss_pred cccCCCcCCCccchHHHH
Confidence 45799999 99999653
No 41
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=33.12 E-value=43 Score=21.23 Aligned_cols=24 Identities=13% Similarity=-0.042 Sum_probs=19.4
Q ss_pred HHHHHHhhhCCCc--cCCcceEEEeh
Q 044222 84 FLHKLFKDYVDPD--EVPTPLPNHKT 107 (122)
Q Consensus 84 ~~~~w~k~YGkvf--~G~~P~l~Isd 107 (122)
-|.+|..+||--| .|.+-.-+|.+
T Consensus 11 afk~was~ygvefktngsqtlaii~~ 36 (79)
T PF09061_consen 11 AFKEWASKYGVEFKTNGSQTLAIIKN 36 (79)
T ss_dssp HHHHHHHTTT-EEEEETTEEEEEETT
T ss_pred HHHHHHHHhCeEEecCCceEEEeecC
Confidence 4779999999999 88888777776
No 42
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=31.93 E-value=54 Score=22.32 Aligned_cols=11 Identities=18% Similarity=0.292 Sum_probs=7.3
Q ss_pred CccCCCCHHHH
Q 044222 49 YRLLFGDLKES 59 (122)
Q Consensus 49 p~~l~GN~~e~ 59 (122)
-.+.+||+...
T Consensus 45 ~~p~YgNL~~~ 55 (107)
T PF15330_consen 45 DDPCYGNLELQ 55 (107)
T ss_pred CCccccccccc
Confidence 34779997543
No 43
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=31.35 E-value=19 Score=22.43 Aligned_cols=16 Identities=25% Similarity=0.127 Sum_probs=13.1
Q ss_pred HHhhhCCCc--cCCcceE
Q 044222 88 LFKDYVDPD--EVPTPLP 103 (122)
Q Consensus 88 w~k~YGkvf--~G~~P~l 103 (122)
.-.+|||+- ||++|..
T Consensus 14 LNSEyGKVaPGWGTTplM 31 (64)
T PRK02624 14 LNSEYGKVVPGWGTTPVM 31 (64)
T ss_pred cccccCcccCCccchHHH
Confidence 356799999 9999954
No 44
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=31.06 E-value=1.1e+02 Score=17.39 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=10.4
Q ss_pred HHHHHhcchhhHHHHHHc
Q 044222 25 LNWLWLRPKKLEKFLRQQ 42 (122)
Q Consensus 25 ~~~~w~~P~rl~~~l~~q 42 (122)
+...+++.++..+.++++
T Consensus 22 ~~~~~~~~r~~~~~l~~~ 39 (46)
T PF04995_consen 22 IVWSLRRRRRLRKELKRL 39 (46)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334556666766666554
No 45
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=29.18 E-value=1.4e+02 Score=19.99 Aligned_cols=10 Identities=30% Similarity=0.620 Sum_probs=8.2
Q ss_pred CCCCCccCCC
Q 044222 45 KGNSYRLLFG 54 (122)
Q Consensus 45 ~GP~p~~l~G 54 (122)
+-|-|+|.+|
T Consensus 62 RrPIYrPvI~ 71 (94)
T PF05393_consen 62 RRPIYRPVIG 71 (94)
T ss_pred cCCccccccc
Confidence 5688899888
No 46
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.95 E-value=1.6e+02 Score=18.82 Aligned_cols=18 Identities=17% Similarity=0.460 Sum_probs=10.2
Q ss_pred HHHHHHhcchhhHHHHHH
Q 044222 24 VLNWLWLRPKKLEKFLRQ 41 (122)
Q Consensus 24 ~~~~~w~~P~rl~~~l~~ 41 (122)
++.-+|...+...+++++
T Consensus 18 ~~~G~fiark~~~k~lk~ 35 (71)
T COG3763 18 LIGGFFIARKQMKKQLKD 35 (71)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334466666666666654
No 47
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=28.19 E-value=1.6e+02 Score=18.52 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhH
Q 044222 10 FTIVIVTLVTWAWMVLNWLWLRPKKLE 36 (122)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~w~~P~rl~ 36 (122)
|++..+.++.++.-++..++-|..-++
T Consensus 20 WlA~~~tll~l~~l~v~sv~qrr~iL~ 46 (67)
T COG3114 20 WLAVGMTLLPLAVLVVHSVLQRRAILR 46 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454434433333444455554444333
No 48
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=28.08 E-value=35 Score=19.87 Aligned_cols=12 Identities=17% Similarity=0.249 Sum_probs=7.5
Q ss_pred HHHHHhhhCCCc
Q 044222 85 LHKLFKDYVDPD 96 (122)
Q Consensus 85 ~~~w~k~YGkvf 96 (122)
+.+|.++|||.|
T Consensus 1 F~~~~~~~~k~Y 12 (58)
T PF08246_consen 1 FEQFKKKYGKSY 12 (58)
T ss_dssp HHHHHHHCT---
T ss_pred CHHHHHHcCCCC
Confidence 468999999998
No 49
>PRK01844 hypothetical protein; Provisional
Probab=27.14 E-value=1.7e+02 Score=18.64 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=10.1
Q ss_pred HHHHHHhcchhhHHHHHH
Q 044222 24 VLNWLWLRPKKLEKFLRQ 41 (122)
Q Consensus 24 ~~~~~w~~P~rl~~~l~~ 41 (122)
++.-++...+..++++++
T Consensus 18 ~~~Gff~ark~~~k~lk~ 35 (72)
T PRK01844 18 VALGFFIARKYMMNYLQK 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455555666666665
No 50
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=26.81 E-value=63 Score=17.47 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=15.0
Q ss_pred hhhHHHHHHcCCCCCCCc
Q 044222 33 KKLEKFLRQQGLKGNSYR 50 (122)
Q Consensus 33 ~rl~~~l~~qGI~GP~p~ 50 (122)
..++..|+++||+.|+..
T Consensus 7 ~~L~~wL~~~gi~~~~~~ 24 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKSA 24 (38)
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 457889999999988775
No 51
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=25.72 E-value=29 Score=22.25 Aligned_cols=15 Identities=27% Similarity=0.153 Sum_probs=12.4
Q ss_pred HhhhCCCc--cCCcceE
Q 044222 89 FKDYVDPD--EVPTPLP 103 (122)
Q Consensus 89 ~k~YGkvf--~G~~P~l 103 (122)
-.+|||+- ||++|..
T Consensus 27 NSeyGkvapgWGTtp~M 43 (73)
T PLN00055 27 NSEYGKVAPGWGTTPLM 43 (73)
T ss_pred ccccCcccCCccchhHH
Confidence 45899999 9999954
No 52
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=25.48 E-value=1.4e+02 Score=16.88 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=10.4
Q ss_pred HHHHHHhcchhhHHHHHHc
Q 044222 24 VLNWLWLRPKKLEKFLRQQ 42 (122)
Q Consensus 24 ~~~~~w~~P~rl~~~l~~q 42 (122)
++...+++.++..+.++++
T Consensus 22 li~~~~~~~r~~~~~l~~~ 40 (45)
T TIGR03141 22 LILWSLLDRRRLLRELRRL 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555666666665544
No 53
>CHL00066 psbH photosystem II protein H
Probab=24.38 E-value=32 Score=22.06 Aligned_cols=15 Identities=27% Similarity=0.153 Sum_probs=12.5
Q ss_pred HhhhCCCc--cCCcceE
Q 044222 89 FKDYVDPD--EVPTPLP 103 (122)
Q Consensus 89 ~k~YGkvf--~G~~P~l 103 (122)
-.+|||+- ||++|..
T Consensus 27 NSeyGkvapgWGTtp~M 43 (73)
T CHL00066 27 NSEYGKVAPGWGTTPLM 43 (73)
T ss_pred ccccCcccCCccchHHH
Confidence 45899999 9999954
No 54
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=23.68 E-value=47 Score=23.12 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=13.5
Q ss_pred hHHHHHHHhhhCCCc
Q 044222 82 TPFLHKLFKDYVDPD 96 (122)
Q Consensus 82 ~p~~~~w~k~YGkvf 96 (122)
-||...|.++|++.|
T Consensus 14 GPFls~WQ~Ry~~Lf 28 (116)
T cd01240 14 GPFLSQWQTRYFKLY 28 (116)
T ss_pred CHHHHHHHHHHheeC
Confidence 388899999999998
No 55
>PF12268 DUF3612: Protein of unknown function (DUF3612); InterPro: IPR022055 This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with PF01381 from PFAM.
Probab=21.21 E-value=12 Score=27.44 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=40.7
Q ss_pred hcchhhHHHHHHcCCCCCCCccCCCCHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHhhh-CCCc------cCCcce
Q 044222 30 LRPKKLEKFLRQQGLKGNSYRLLFGDLKESTIMLKKAKARPLSLDDDAAVRVTPFLHKLFKDY-VDPD------EVPTPL 102 (122)
Q Consensus 30 ~~P~rl~~~l~~qGI~GP~p~~l~GN~~e~~~~~~~a~~~~~~~~hdi~~~v~p~~~~w~k~Y-Gkvf------~G~~P~ 102 (122)
..|-++....|--|||- ++|||..+.+ |. -|= -.|+.....- |..- .|.+|+
T Consensus 15 Y~pGkLKAVYRGNGIPL-----PwGNMr~V~D--------PC--qHW------aVFR~~~~~~~gssAQiSIL~v~~~pr 73 (178)
T PF12268_consen 15 YAPGKLKAVYRGNGIPL-----PWGNMRQVED--------PC--QHW------AVFRMISEPSSGSSAQISILNVGNEPR 73 (178)
T ss_pred cCCCceeEEEecCCCcC-----CccCceecCC--------cc--hhh------hhhheecCCCCCcceeEEEeecCCCce
Confidence 34667777777888874 4899876522 11 010 0011111111 2221 888999
Q ss_pred EEEeh-hHHHHHhhcCCccc
Q 044222 103 PNHKT-CVALEVVGHPSEFC 121 (122)
Q Consensus 103 l~Isd-~~ikeIl~K~~~~~ 121 (122)
+.--+ --++|.-+.+.++|
T Consensus 74 IYcCESi~v~D~Agn~hVLC 93 (178)
T PF12268_consen 74 IYCCESIKVKDLAGNNHVLC 93 (178)
T ss_pred EEEecccccccCCCCceeEE
Confidence 88777 44777667777776
No 56
>PF08906 DUF1851: Domain of unknown function (DUF1851); InterPro: IPR015002 This domain is found at the C terminus of a variety of proteins that are functionally uncharacterised.
Probab=21.06 E-value=97 Score=19.73 Aligned_cols=30 Identities=7% Similarity=-0.090 Sum_probs=24.6
Q ss_pred HHHHHHHhhhCCCc----cCCcceEEEeh-hHHHH
Q 044222 83 PFLHKLFKDYVDPD----EVPTPLPNHKT-CVALE 112 (122)
Q Consensus 83 p~~~~w~k~YGkvf----~G~~P~l~Isd-~~ike 112 (122)
|.+.+..+++|..- +|-.|.+.+.. +.+..
T Consensus 28 ~l~~~a~~~~G~L~~dE~ygf~P~l~LGG~~~~en 62 (80)
T PF08906_consen 28 PLFDRAREKLGPLEYDECYGFVPALALGGEEEVEN 62 (80)
T ss_pred HHHHHHHHhcCCCCCCceeecccchhccCHhHHHh
Confidence 55789999999886 99999998887 55555
No 57
>PF13072 DUF3936: Protein of unknown function (DUF3936)
Probab=20.47 E-value=97 Score=17.38 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=14.4
Q ss_pred CCCCCccCCCCHHHHHHHH
Q 044222 45 KGNSYRLLFGDLKESTIML 63 (122)
Q Consensus 45 ~GP~p~~l~GN~~e~~~~~ 63 (122)
.++....+.|...|++.+.
T Consensus 5 ~~~~~i~lvGKAWeIr~~L 23 (38)
T PF13072_consen 5 RHENGIILVGKAWEIRAKL 23 (38)
T ss_pred ecCCeEEEEehHHHHHHHH
Confidence 4567778899999997643
No 58
>PRK00523 hypothetical protein; Provisional
Probab=20.46 E-value=2.5e+02 Score=17.95 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=9.9
Q ss_pred HHHHHHhcchhhHHHHHH
Q 044222 24 VLNWLWLRPKKLEKFLRQ 41 (122)
Q Consensus 24 ~~~~~w~~P~rl~~~l~~ 41 (122)
++.-++...+..++++++
T Consensus 19 ~~~Gffiark~~~k~l~~ 36 (72)
T PRK00523 19 GIIGYFVSKKMFKKQIRE 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555566666654
No 59
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=20.13 E-value=1.5e+02 Score=20.75 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=8.8
Q ss_pred HHHHHHHHhcchh
Q 044222 22 WMVLNWLWLRPKK 34 (122)
Q Consensus 22 ~~~~~~~w~~P~r 34 (122)
+-++.++.|+|..
T Consensus 21 ~~~l~kfl~kPi~ 33 (141)
T PRK08476 21 IVILNSWLYKPLL 33 (141)
T ss_pred HHHHHHHHHHHHH
Confidence 3466777788865
Done!