BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044224
(442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 270 bits (689), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/391 (39%), Positives = 218/391 (55%), Gaps = 82/391 (20%)
Query: 1 MALQDSEVPASILNATGGN--RPTASYHPTLWGEKFLDCSSADDSVAMDPTID---QDEF 55
MA Q S++P+S ++ + RP A + P++WG+ FL+C D ID +
Sbjct: 1 MASQVSQMPSSSPLSSNKDEMRPKADFQPSIWGDLFLNCP--------DKNIDAETEKRH 52
Query: 56 EGLKQKIKNMLNSPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSHDEYDG-NDVH 114
+ LK++++ M+ +P S QKL+ ID+VQRLGV+YHF +EIEDELE + H+ D ND++
Sbjct: 53 QQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLY 112
Query: 115 TVALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLINDVAGMLSLYEAAHLRIHGE---- 170
T ++RFRLLR+ GY +SCD+F+ FKD+QG FK S+ +DV G+L LY+A++LR+HGE
Sbjct: 113 TTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILD 172
Query: 171 -----------XXXXXXXXXXXXXXXXXXXKPIRRGLPRLEAIYYIDLYSQDDSKDKAIL 219
+ IRRGLPR+EA +Y+ +Y +S +KA L
Sbjct: 173 EAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKA-L 231
Query: 220 LKFAKLDFCMLQVIHRKELSIITEPLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDF 279
L+FAK+DF MLQ +HRKELS I R++ D+
Sbjct: 232 LEFAKIDFNMLQFLHRKELSEI------------CRWWKDL------------------- 260
Query: 280 CTPKVFHRXXXXXXXXXXXXXDVKTKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKI 339
D + KLPY DR+VE YFWI VYFEP YS GR L+K+
Sbjct: 261 ---------------------DFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKV 299
Query: 340 IPFISIIDNTYDAYSAIEEAQLFTNAIKRGD 370
I SI+D+TYD+Y+ EE +TNAI+R D
Sbjct: 300 IAMASIVDDTYDSYATYEELIPYTNAIERWD 330
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 379 KRVER-YNHINEGLLKPTEVAMPLLECILNLARVMDVIYKDDDGYT 423
K VE + +N+ LKPTE+ +L LNLARVMDV+Y++ DGYT
Sbjct: 489 KHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYT 534
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 236 bits (601), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 139/373 (37%), Positives = 206/373 (55%), Gaps = 73/373 (19%)
Query: 20 RPTASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSPTDKSFQKLSL 79
RP A + P+LWG++FL S D+ VA E E LK++ +NML + K L+L
Sbjct: 15 RPVADFSPSLWGDQFLSFS-IDNQVAEKYA---KEIEALKEQTRNMLLATGMKLADTLNL 70
Query: 80 IDAVQRLGVAYHFEREIEDELEKLSHDEYDGNDVHTVALRFRLLRQQGYRISCDIFSGFK 139
ID ++RLG++YHFE+EI+D L+++ + + ND+ T AL+FRLLRQ G+ IS +IFS F+
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQ 130
Query: 140 DDQGKFKVSLINDVAGMLSLYEAAHLR---------------IHGEXXXXXXXXXXXXXX 184
D+ GKFK SL +DV G+L+LYEA+H+R IH E
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQV 190
Query: 185 XXXXXKPIRRGLPRLEAIYYID-LYSQDDSKDKAILLKFAKLDFCMLQVIHRKELSIITE 243
+ + +G+PR+E ++I +Y ++ SK+ +LL+FAKLDF +LQ++H++EL+ ++
Sbjct: 191 THALEQCLHKGVPRVETRFFISSIYDKEQSKNN-VLLRFAKLDFNLLQMLHKQELAQVS- 248
Query: 244 PLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRXXXXXXXXXXXXXDVK 303
R++ D LDF
Sbjct: 249 -----------RWWKD-----------------LDFV----------------------- 257
Query: 304 TKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFT 363
T LPY DR+VECYFW + VYFEP YS R+ L K I ISI+D+T+DAY ++E + +T
Sbjct: 258 TTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYT 317
Query: 364 NAIKRGDSNITQR 376
+AI+R D N R
Sbjct: 318 DAIQRWDINEIDR 330
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 384 YNHINEGLLKPTEVAMPLLECILNLARVMDVIYKDD-DGYTN-SYVIKDYIATLL 436
+ INEGLL+PT V+ L ILNLAR+++V Y + DGYT+ V+K +I LL
Sbjct: 488 WKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLL 542
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 236 bits (601), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 139/373 (37%), Positives = 206/373 (55%), Gaps = 73/373 (19%)
Query: 20 RPTASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSPTDKSFQKLSL 79
RP A + P+LWG++FL S D+ VA E E LK++ +NML + K L+L
Sbjct: 15 RPVADFSPSLWGDQFLSFS-IDNQVAEKYA---KEIEALKEQTRNMLLATGMKLADTLNL 70
Query: 80 IDAVQRLGVAYHFEREIEDELEKLSHDEYDGNDVHTVALRFRLLRQQGYRISCDIFSGFK 139
ID ++RLG++YHFE+EI+D L+++ + + ND+ T AL+FRLLRQ G+ IS +IFS F+
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQ 130
Query: 140 DDQGKFKVSLINDVAGMLSLYEAAHLR---------------IHGEXXXXXXXXXXXXXX 184
D+ GKFK SL +DV G+L+LYEA+H+R IH E
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQV 190
Query: 185 XXXXXKPIRRGLPRLEAIYYID-LYSQDDSKDKAILLKFAKLDFCMLQVIHRKELSIITE 243
+ + +G+PR+E ++I +Y ++ SK+ +LL+FAKLDF +LQ++H++EL+ ++
Sbjct: 191 THALEQCLHKGVPRVETRFFISSIYDKEQSKNN-VLLRFAKLDFNLLQMLHKQELAQVS- 248
Query: 244 PLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRXXXXXXXXXXXXXDVK 303
R++ D LDF
Sbjct: 249 -----------RWWKD-----------------LDFV----------------------- 257
Query: 304 TKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFT 363
T LPY DR+VECYFW + VYFEP YS R+ L K I ISI+D+T+DAY ++E + +T
Sbjct: 258 TTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYT 317
Query: 364 NAIKRGDSNITQR 376
+AI+R D N R
Sbjct: 318 DAIQRWDINEIDR 330
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 384 YNHINEGLLKPTEVAMPLLECILNLARVMDVIYKDD-DGYTN-SYVIKDYIATLL 436
+ INEGLL+PT V+ L ILNLAR+++V Y + DGYT+ V+K +I LL
Sbjct: 488 WKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLL 542
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 233 bits (594), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/373 (36%), Positives = 205/373 (54%), Gaps = 73/373 (19%)
Query: 20 RPTASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSPTDKSFQKLSL 79
RP A + P+LWG++FL S + VA E E LK++ +NML + K L+L
Sbjct: 17 RPVADFSPSLWGDQFLSFS-IKNQVAEKYA---KEIEALKEQTRNMLLATGMKLADTLNL 72
Query: 80 IDAVQRLGVAYHFEREIEDELEKLSHDEYDGNDVHTVALRFRLLRQQGYRISCDIFSGFK 139
ID ++RLG++YHFE+EI+D L+++ + + ND+ T AL+FRLLRQ G+ IS +IFS F+
Sbjct: 73 IDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQ 132
Query: 140 DDQGKFKVSLINDVAGMLSLYEAAHLR---------------IHGEXXXXXXXXXXXXXX 184
D+ GKFK SL +DV G+L+LYEA+H+R IH E
Sbjct: 133 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQV 192
Query: 185 XXXXXKPIRRGLPRLEAIYYID-LYSQDDSKDKAILLKFAKLDFCMLQVIHRKELSIITE 243
+ + +G+PR+E ++I +Y ++ SK+ +LL+FAKLDF +LQ++H++EL+ ++
Sbjct: 193 THALEQCLHKGVPRVETRFFISSIYDKEQSKNN-VLLRFAKLDFNLLQMLHKQELAQVS- 250
Query: 244 PLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRXXXXXXXXXXXXXDVK 303
R++ D LDF
Sbjct: 251 -----------RWWKD-----------------LDFV----------------------- 259
Query: 304 TKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFT 363
T LPY DR+VECYFW + VYFEP YS R+ L K I ISI+D+T+DAY ++E + +T
Sbjct: 260 TTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYT 319
Query: 364 NAIKRGDSNITQR 376
+AI+R D N R
Sbjct: 320 DAIQRWDINEIDR 332
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 384 YNHINEGLLKPTEVAMPLLECILNLARVMDVIYKDD-DGYTN-SYVIKDYIATLL 436
+ INEGLL+PT V+ L ILNLAR+++V Y + DGYT+ V+K +I LL
Sbjct: 490 WKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLL 544
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/373 (36%), Positives = 205/373 (54%), Gaps = 73/373 (19%)
Query: 20 RPTASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSPTDKSFQKLSL 79
RP A + P+LWG++FL S + VA E E LK++ +NML + K L+L
Sbjct: 17 RPVADFSPSLWGDQFLSFS-IKNQVAEKYA---KEIEALKEQTRNMLLATGMKLADTLNL 72
Query: 80 IDAVQRLGVAYHFEREIEDELEKLSHDEYDGNDVHTVALRFRLLRQQGYRISCDIFSGFK 139
ID ++RLG++YHFE+EI+D L+++ + + ND+ T AL+FRLLRQ G+ IS +IFS F+
Sbjct: 73 IDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQ 132
Query: 140 DDQGKFKVSLINDVAGMLSLYEAAHLR---------------IHGEXXXXXXXXXXXXXX 184
D+ GKFK SL +DV G+L+LYEA+H+R IH E
Sbjct: 133 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQV 192
Query: 185 XXXXXKPIRRGLPRLEAIYYID-LYSQDDSKDKAILLKFAKLDFCMLQVIHRKELSIITE 243
+ + +G+PR+E ++I +Y ++ SK+ +LL+FAKLDF +LQ++H++EL+ ++
Sbjct: 193 THALEQCLHKGVPRVETRFFISSIYDKEQSKNN-VLLRFAKLDFNLLQMLHKQELAQVS- 250
Query: 244 PLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRXXXXXXXXXXXXXDVK 303
R++ D LDF
Sbjct: 251 -----------RWWKD-----------------LDFV----------------------- 259
Query: 304 TKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFT 363
T LPY DR+VECYFW + VYFEP YS R+ L K I ISI+D+T+DAY ++E + +T
Sbjct: 260 TTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYT 319
Query: 364 NAIKRGDSNITQR 376
+AI+R D N R
Sbjct: 320 DAIQRWDINEIDR 332
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 384 YNHINEGLLKPTEVAMPLLECILNLARVMDVIYKDD-DGYTN-SYVIKDYIATLL 436
+ INEGLL+PT V+ L ILNLAR+++V Y + DGYT+ V+K +I LL
Sbjct: 490 WKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLL 544
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/373 (36%), Positives = 205/373 (54%), Gaps = 73/373 (19%)
Query: 20 RPTASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSPTDKSFQKLSL 79
RP A + P+LWG++FL S + VA E E LK++ +NML + K L+L
Sbjct: 2 RPVADFSPSLWGDQFLSFS-IKNQVAEKYA---KEIEALKEQTRNMLLATGMKLADTLNL 57
Query: 80 IDAVQRLGVAYHFEREIEDELEKLSHDEYDGNDVHTVALRFRLLRQQGYRISCDIFSGFK 139
ID ++RLG++YHFE+EI+D L+++ + + ND+ T AL+FRLLRQ G+ IS +IFS F+
Sbjct: 58 IDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQ 117
Query: 140 DDQGKFKVSLINDVAGMLSLYEAAHLR---------------IHGEXXXXXXXXXXXXXX 184
D+ GKFK SL +DV G+L+LYEA+H+R IH E
Sbjct: 118 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQV 177
Query: 185 XXXXXKPIRRGLPRLEAIYYID-LYSQDDSKDKAILLKFAKLDFCMLQVIHRKELSIITE 243
+ + +G+PR+E ++I +Y ++ SK+ +LL+FAKLDF +LQ++H++EL+ ++
Sbjct: 178 THALEQCLHKGVPRVETRFFISSIYDKEQSKNN-VLLRFAKLDFNLLQMLHKQELAQVS- 235
Query: 244 PLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRXXXXXXXXXXXXXDVK 303
R++ D LDF
Sbjct: 236 -----------RWWKD-----------------LDFV----------------------- 244
Query: 304 TKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFT 363
T LPY DR+VECYFW + VYFEP YS R+ L K I ISI+D+T+DAY ++E + +T
Sbjct: 245 TTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYT 304
Query: 364 NAIKRGDSNITQR 376
+AI+R D N R
Sbjct: 305 DAIQRWDINEIDR 317
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 384 YNHINEGLLKPTEVAMPLLECILNLARVMDVIYKDD-DGYTN-SYVIKDYIATLL 436
+ INEGLL+PT V+ L ILNLAR+++V Y + DGYT+ V+K +I LL
Sbjct: 475 WKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLL 529
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 232 bits (592), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 206/373 (55%), Gaps = 73/373 (19%)
Query: 20 RPTASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSPTDKSFQKLSL 79
RP A + P+LWG++FL S D+ VA E E LK++ ++ML + K L+L
Sbjct: 15 RPVADFSPSLWGDQFLSFS-IDNQVAEKYA---QEIEALKEQTRSMLLATGRKLADTLNL 70
Query: 80 IDAVQRLGVAYHFEREIEDELEKLSHDEYDGNDVHTVALRFRLLRQQGYRISCDIFSGFK 139
ID ++RLG++YHFE+EI++ L+++ + + ND+ T AL+FRLLRQ G+ IS +IFS F+
Sbjct: 71 IDIIERLGISYHFEKEIDEILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQ 130
Query: 140 DDQGKFKVSLINDVAGMLSLYEAAHLR---------------IHGEXXXXXXXXXXXXXX 184
D+ GKFK SL +DV G+L+LYEA+H+R IH E
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQV 190
Query: 185 XXXXXKPIRRGLPRLEAIYYID-LYSQDDSKDKAILLKFAKLDFCMLQVIHRKELSIITE 243
+ + +G+PR+E ++I +Y ++ SK+ +LL+FAKLDF +LQ++H++EL+ ++
Sbjct: 191 THALEQCLHKGVPRVETRFFISSIYDKEQSKNN-VLLRFAKLDFNLLQMLHKQELAQVS- 248
Query: 244 PLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRXXXXXXXXXXXXXDVK 303
R++ D LDF
Sbjct: 249 -----------RWWKD-----------------LDFV----------------------- 257
Query: 304 TKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFT 363
T LPY DR+VECYFW + VYFEP YS R+ L K I ISI+D+T+DAY ++E + +T
Sbjct: 258 TTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYT 317
Query: 364 NAIKRGDSNITQR 376
+AI+R D N R
Sbjct: 318 DAIQRWDINEIDR 330
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 384 YNHINEGLLKPTEVAMPLLECILNLARVMDVIYKDD-DGYTN-SYVIKDYIATLL 436
+ INEGLL+PT V+ L ILNLAR+++V Y + DGYT+ V+K +I LL
Sbjct: 488 WKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLL 542
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 232 bits (591), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 206/373 (55%), Gaps = 73/373 (19%)
Query: 20 RPTASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSPTDKSFQKLSL 79
RP A + P+LWG++FL S D+ VA E E LK++ ++ML + K L+L
Sbjct: 15 RPVADFSPSLWGDQFLSFS-IDNQVAEKYA---QEIEALKEQTRSMLLATGRKLADTLNL 70
Query: 80 IDAVQRLGVAYHFEREIEDELEKLSHDEYDGNDVHTVALRFRLLRQQGYRISCDIFSGFK 139
ID ++RLG++YHFE+EI++ L+++ + + ND+ T AL+FRLLRQ G+ IS +IFS F+
Sbjct: 71 IDIIERLGISYHFEKEIDEILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQ 130
Query: 140 DDQGKFKVSLINDVAGMLSLYEAAHLR---------------IHGEXXXXXXXXXXXXXX 184
D+ GKFK SL +DV G+L+LYEA+H+R IH E
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQV 190
Query: 185 XXXXXKPIRRGLPRLEAIYYID-LYSQDDSKDKAILLKFAKLDFCMLQVIHRKELSIITE 243
+ + +G+PR+E ++I +Y ++ SK+ +LL+FAKLDF +LQ++H++EL+ ++
Sbjct: 191 THALEQCLHKGVPRVETRFFISSIYDKEQSKNN-VLLRFAKLDFNLLQMLHKQELAQVS- 248
Query: 244 PLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRXXXXXXXXXXXXXDVK 303
R++ D LDF
Sbjct: 249 -----------RWWKD-----------------LDFV----------------------- 257
Query: 304 TKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFT 363
T LPY DR+VECYFW + VYFEP YS R+ L K I ISI+D+T+DAY ++E + +T
Sbjct: 258 TTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYT 317
Query: 364 NAIKRGDSNITQR 376
+AI+R D N R
Sbjct: 318 DAIQRWDINEIDR 330
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 384 YNHINEGLLKPTEVAMPLLECILNLARVMDVIYKDD-DGYTN-SYVIKDYIATLL 436
+ INEGLL+PT V+ L ILNLAR+++V Y + DGYT+ V+K +I LL
Sbjct: 488 WKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLL 542
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/373 (36%), Positives = 205/373 (54%), Gaps = 73/373 (19%)
Query: 20 RPTASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSPTDKSFQKLSL 79
RP A + P+LWG++FL S D+ VA E E LK++ +NML + K L+L
Sbjct: 15 RPVADFSPSLWGDQFLSFS-IDNQVAEKYA---KEIEALKEQTRNMLLATGMKLADTLNL 70
Query: 80 IDAVQRLGVAYHFEREIEDELEKLSHDEYDGNDVHTVALRFRLLRQQGYRISCDIFSGFK 139
ID ++RLG++YHFE+EI+D L+++ + + ND+ T AL+FRLLRQ G+ IS +IFS F+
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQ 130
Query: 140 DDQGKFKVSLINDVAGMLSLYEAAHLR---------------IHGEXXXXXXXXXXXXXX 184
D+ GKFK SL +DV G+L+LYEA+H+R IH E
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQV 190
Query: 185 XXXXXKPIRRGLPRLEAIYYID-LYSQDDSKDKAILLKFAKLDFCMLQVIHRKELSIITE 243
+ + +G+PR+E ++I +Y ++ SK+ +LL+FAKLDF +LQ++H++EL+ ++
Sbjct: 191 THALEQCLHKGVPRVETRFFISSIYDKEQSKNN-VLLRFAKLDFNLLQMLHKQELAQVS- 248
Query: 244 PLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRXXXXXXXXXXXXXDVK 303
R++ D LDF
Sbjct: 249 -----------RWWKD-----------------LDFV----------------------- 257
Query: 304 TKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFT 363
T LPY DR+VECYF + VYFEP YS R+ L K I ISI+D+T+DAY ++E + +T
Sbjct: 258 TTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYT 317
Query: 364 NAIKRGDSNITQR 376
+AI+R D N R
Sbjct: 318 DAIQRWDINEIDR 330
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 384 YNHINEGLLKPTEVAMPLLECILNLARVMDVIYKDD-DGYTN-SYVIKDYIATLL 436
+ INEGLL+PT V+ L ILNLAR+++V Y + DGYT+ V+K +I LL
Sbjct: 488 WKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLL 542
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 229 bits (585), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/373 (36%), Positives = 205/373 (54%), Gaps = 73/373 (19%)
Query: 20 RPTASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSPTDKSFQKLSL 79
RP A + P+LWG++FL S D+ VA E E LK++ +NML + K L+L
Sbjct: 15 RPVADFSPSLWGDQFLSFS-IDNQVAEKYA---KEIEALKEQTRNMLLATGMKLADTLNL 70
Query: 80 IDAVQRLGVAYHFEREIEDELEKLSHDEYDGNDVHTVALRFRLLRQQGYRISCDIFSGFK 139
ID ++RLG++YHFE+EI+D L+++ + + ND+ T AL+FRLLRQ G+ IS +IFS F+
Sbjct: 71 IDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQ 130
Query: 140 DDQGKFKVSLINDVAGMLSLYEAAHLR---------------IHGEXXXXXXXXXXXXXX 184
D+ GKFK SL +DV G+L+LYEA+H+R IH E
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQV 190
Query: 185 XXXXXKPIRRGLPRLEAIYYID-LYSQDDSKDKAILLKFAKLDFCMLQVIHRKELSIITE 243
+ + +G+PR+E ++I +Y ++ SK+ +LL+FAKLDF +LQ++H++EL+ ++
Sbjct: 191 THALEQCLHKGVPRVETRFFISSIYDKEQSKNN-VLLRFAKLDFNLLQMLHKQELAQVS- 248
Query: 244 PLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRXXXXXXXXXXXXXDVK 303
R++ D LDF
Sbjct: 249 -----------RWWKD-----------------LDFV----------------------- 257
Query: 304 TKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFT 363
T LPY DR+VECYF + VYFEP YS R+ L K I ISI+D+T+DAY ++E + +T
Sbjct: 258 TTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYT 317
Query: 364 NAIKRGDSNITQR 376
+AI+R D N R
Sbjct: 318 DAIQRWDINEIDR 330
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 384 YNHINEGLLKPTEVAMPLLECILNLARVMDVIYKDD-DGYTN-SYVIKDYIATLL 436
+ INEGLL+PT V+ L ILNLAR+++V Y + DGYT+ V+K +I LL
Sbjct: 488 WKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLL 542
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 172 bits (435), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 115/357 (32%), Positives = 179/357 (50%), Gaps = 45/357 (12%)
Query: 20 RPTASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSPTDKSFQKLSL 79
R +A Y P W FL S D+S+ + +D+ + L+ +++ +N+ + L L
Sbjct: 15 RRSADYEPNSWDYDFLLSSDTDESI----EVYKDKAKKLEAEVRREINNEKAEFLTLLEL 70
Query: 80 IDAVQRLGVAYHFEREIEDELEK-LSHDEYDG---NDVHTVALRFRLLRQQGYRISCDIF 135
ID VQRLG+ Y FE +I L++ +S +DG +H AL FRLLRQ G+ +S + F
Sbjct: 71 IDNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAF 130
Query: 136 SGFKDDQGKFKVSLINDVAGMLSLYEAAHLRIHGEXXXXXXXXXXXXXXXXXXXKPIRRG 195
SGFKD G F +L D +LSLYEA+ L + GE
Sbjct: 131 SGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDE-------------------- 170
Query: 196 LPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFCMLQVIHRKELSIITEPLRRGLTRLEAR 255
R+ AI ++ S++ I + A+ QV H EL PL R RLEA
Sbjct: 171 -ARVFAISHLKELSEE-----KIGKELAE------QVNHALEL-----PLHRRTQRLEAV 213
Query: 256 YYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRXXXXXXXXXXXXXDVKTKLPYVGDRIVE 315
+ + Y K + +Q +L A LD+ + ++ + TKL + DR++E
Sbjct: 214 WSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIE 273
Query: 316 CYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFTNAIKRGDSN 372
++W + V FEP YS R +++K+ F++IID+ YD Y ++E +LFT+A++R D N
Sbjct: 274 SFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVN 330
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/352 (31%), Positives = 170/352 (48%), Gaps = 45/352 (12%)
Query: 22 TASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSPTDKSFQKLSLID 81
T Y PTLW F S D + + + G+ ++K ML D S ++L LID
Sbjct: 37 TGGYQPTLW--DFSTIQSFDSEYKEEKHLMRAA--GMIDQVKMMLQEEVD-SIRRLELID 91
Query: 82 AVQRLGVAYHFEREIEDELEK--LSHDEYDGNDVHTVALRFRLLRQQGYRISCDIFSGFK 139
++RLG++ HFEREI + L +++E D D+++ ALRFRLLRQ + +S ++F FK
Sbjct: 92 DLRRLGISCHFEREIVEILNSKYYTNNEIDERDLYSTALRFRLLRQYDFSVSQEVFDCFK 151
Query: 140 DDQGK-FKVSLINDVAGMLSLYEAAHLRIHGEXXXXXXXXXXXXXXXXXXXKPIRRGLPR 198
+ +G FK SL++D G+L LYEA+ L GE + +R L R
Sbjct: 152 NAKGTDFKPSLVDDTRGLLQLYEASFLSAQGE-------------------ETLR--LAR 190
Query: 199 LEAIYYIDLYSQDDSKDKAILLKFAKLDFCMLQVIHRKELSIITEPLRRGLTRLEARYYN 258
A ++ K +L+ D +L I R + P + AR +
Sbjct: 191 DFATKFL---------QKRVLV---DKDINLLSSIERA----LELPTHWRVQMPNARSFI 234
Query: 259 DVYSKDDSKDQTILRFAKLDFCTPKVFHRXXXXXXXXXXXXXDVKTKLPYVGDRIVECYF 318
D Y + + T+L AKLDF + + + +LP+V DRIVECY+
Sbjct: 235 DAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYY 294
Query: 319 WIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFTNAIKRGD 370
W V + + R+ L+KI ++ ID+ +D Y +EE QLFT AI+R D
Sbjct: 295 WTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWD 346
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 124 bits (311), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 161/362 (44%), Gaps = 51/362 (14%)
Query: 20 RPTASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSPTDKSFQKLSL 79
R + +Y+P+ W F+ S D I E L +K L TD+ ++L L
Sbjct: 2 RRSGNYNPSRWDVNFIQ-SLLSDYKEDKHVIRASELVTL---VKMELEKETDQ-IRQLEL 56
Query: 80 IDAVQRLGVAYHFEREIEDELEKLSHDEY--------DGNDVHTVALRFRLLRQQGYRIS 131
ID +QR+G++ HF+ E ++ L + D + + D+++ +L FRLLR+ G++++
Sbjct: 57 IDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVA 116
Query: 132 CDIFSGFKDDQGKFKVSLINDVAGMLSLYEAAHLRIHGEXXXXXXXXXXXXXXXXXXXKP 191
++F FK+++G+FK SL +D G+L LYEA+ L GE
Sbjct: 117 QEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLES---------------- 160
Query: 192 IRRGLPRLEAIYYIDLYSQDDSKDKAILLKFA-KLDFCMLQVIHRKELSIITEPLRRGLT 250
R A +++ + D +L + A LD PL +
Sbjct: 161 -----AREFATKFLEEKVNEGGVDGDLLTRIAYSLDI----------------PLHWRIK 199
Query: 251 RLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRXXXXXXXXXXXXXDVKTKLPYVG 310
R A + + Y K + +L A LD + + KLP+
Sbjct: 200 RPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFAR 259
Query: 311 DRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFTNAIKRGD 370
DR+VECYFW + ++ R+ + K+ I++ID+ YD Y +EE + FT+ I+R D
Sbjct: 260 DRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWD 319
Query: 371 SN 372
N
Sbjct: 320 IN 321
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 167/365 (45%), Gaps = 47/365 (12%)
Query: 20 RPTASYHPTLWGEKFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSPTDKSFQKLSL 79
R + +Y P LW ++ S + + +D+ L +++ +L + Q+L L
Sbjct: 6 RRSGNYQPALWDSNYI--QSLNTPYTEERHLDRKA--ELIVQVRILLKEKME-PVQQLEL 60
Query: 80 IDAVQRLGVAYHFEREIED-------ELEKLSHDEYDGNDVHTVALRFRLLRQQGYRISC 132
I ++ LG++ F+ EI++ E + ++E + D++ AL FRLLRQ G+ IS
Sbjct: 61 IHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQ 120
Query: 133 DIFSGFKDDQG-KFKVSLINDVAGMLSLYEAAHLRIHGEXXXXXXXXXXXXXXXXXXXKP 191
D+F+ FK+++G FK SL D GML LYEA+ L GE K
Sbjct: 121 DVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFAT--------KC 172
Query: 192 IRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFCMLQVIHRKELSIITEPLRRGLTR 251
+++ L + D+ +LL + H +L PL +
Sbjct: 173 LQKKLDE-----------GGNEIDENLLL----------WIRHSLDL-----PLHWRIQS 206
Query: 252 LEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRXXXXXXXXXXXXXDVKTKLPYVGD 311
+EAR++ D Y++ + I AKL+F + H+ KLP+V D
Sbjct: 207 VEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRD 266
Query: 312 RIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFTNAIKRGDS 371
R+VE +FW + ++ + + R + II ++ID+ YD Y ++E +LFT+ KR D+
Sbjct: 267 RLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDT 326
Query: 372 NITQR 376
R
Sbjct: 327 ESITR 331
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 136/315 (43%), Gaps = 32/315 (10%)
Query: 74 FQKLSLIDAVQRLGVAYHFEREIEDELEKL-SHDEYDG---------NDVHTVALRFRLL 123
++L ++D + RLG+ HFE+EI++ L+ + H G D+ T AL FRLL
Sbjct: 299 LERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLL 358
Query: 124 RQQGYRISCDIFSGFKDDQGKFKVS---LINDVAGMLSLYEAAHLRIHGEXXXXXXXXXX 180
R Y +S IF FKD GKF S DVA ML+LY A+ L GE
Sbjct: 359 RLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGE--------NI 410
Query: 181 XXXXXXXXXKPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFCMLQVIHRKELSI 240
K +R L + E + ++ ++ + +K+A L + R E
Sbjct: 411 LDEAKSFATKYLREALEKSETS-----SAWNNKQNLSQEIKYA-LKTSWHASVPRVEAKR 464
Query: 241 ITEPLRRGLTRLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRXXXXXXXXXXXXX 300
+ R R+ Y Y ++ L KLDF + H+
Sbjct: 465 YCQVYRPDYARIAKCVYKLPYVNNEK----FLELGKLDFNIIQSIHQEEMKNVTSWFRDS 520
Query: 301 DVKTKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQ 360
+ + +R +E YF + +EP Y+ R +K+ +++D+ YD Y ++E +
Sbjct: 521 GLPL-FTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELK 579
Query: 361 LFTNAIKRGDSNITQ 375
LFT A++R D + T+
Sbjct: 580 LFTEAVRRWDLSFTE 594
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 391 LLKPTEVAMPLLECILNLARVMDVIYKDDDGYTNSYV-IKDYIATLLEKLVPF 442
LKP +V + + RV VI+KD DG+ S + +KD+I L + +P
Sbjct: 765 FLKPDDVPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 144/346 (41%), Gaps = 61/346 (17%)
Query: 74 FQKLSLIDAVQRLGVAYHFEREIEDELEKL-SHDEYDG---------NDVHTVALRFRLL 123
F++L +D V+RLG+ HF+ EI++ L+ + SH + G D+ A+ R+L
Sbjct: 271 FERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRIL 330
Query: 124 RQQGYRISCDIFSGFKDDQGKFKVSLINDVAG---MLSLYEAAHLRIHGEXXXXXXXXXX 180
R GY +S D+ F+D+ G+F L G ML++ +H+ GE
Sbjct: 331 RLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCT 390
Query: 181 XXXXXXXXXKPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFCMLQVIHRKELSI 240
+ +R L ++A DK + + I +
Sbjct: 391 E--------RYLRNALENVDAF------------DK----------WAFKKNIRGEVEYA 420
Query: 241 ITEPLRRGLTRLEARYYNDVYSKDDS------------KDQTILRFAKLDFCTPKVFHRX 288
+ P + + RLEAR Y + Y DD ++ L AKLDF + H+
Sbjct: 421 LKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQT 480
Query: 289 XXXXXXXXXXXXDVKTKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDN 348
T L + +R+ E YF FEP +S R +K F I+D+
Sbjct: 481 ELQDLRRWWKSSGF-TDLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDD 539
Query: 349 TYDAYSAIEEAQLFTNAIKRGDSNIT-----QRNIKRVERYNHINE 389
YDA+ ++++ +LFT ++KR D ++ Q I V YN N+
Sbjct: 540 LYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFND 585
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 94/416 (22%), Positives = 161/416 (38%), Gaps = 106/416 (25%)
Query: 8 VPASILNATGGNRPTASYHPTLWGEK----FLDCSSADDSVAMDPTIDQDEFEGLKQKIK 63
+PA++LNA G ++ + + FL ++ V M+ T D+ F L +
Sbjct: 174 IPANMLNALEGLEEVIDWNKIMRFQSKDGSFLSSPASTACVLMN-TGDEKCFTFLNNLLD 232
Query: 64 NMLNS-PTDKS---FQKLSLIDAVQRLGVAYHFEREIEDELEKL-SHDEYDG-------- 110
P S ++LSL+D ++ LG+ HF++EI+ L+ + H G
Sbjct: 233 KFGGCVPCMYSIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSL 292
Query: 111 -NDVHTVALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLIN---DVAGMLSLYEAAHLR 166
D++T AL R LR GY +S D+ + FKD+ G+F S ++ +++L+ A+ L
Sbjct: 293 VPDLNTTALGLRTLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLA 352
Query: 167 IHGE------------------XXXXXXXXXXXXXXXXXXXKPIRRGLPRLEAIYYIDLY 208
E P +PRLEA YID Y
Sbjct: 353 FPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSY 412
Query: 209 SQD-----------DSKDKAILLKFAKLDFCMLQVIHRKELSIITEPLRRGLTRLEARYY 257
+ S + L+ AKLDF ++Q +H++EL ++T R++
Sbjct: 413 DDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLT------------RWW 460
Query: 258 NDVYSKDDSKDQTILRFAKLDFCTPKVFHRXXXXXXXXXXXXXDVKTKLPYVGDRIVECY 317
+ D + + R+ E Y
Sbjct: 461 KESGMAD-----------------------------------------INFTRHRVAEVY 479
Query: 318 FWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFTNAIKRGDSNI 373
F FEP YS R+ +KI + D+ D ++ ++E + FT +KR D+++
Sbjct: 480 F--SSATFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSL 533
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 145/377 (38%), Gaps = 90/377 (23%)
Query: 7 EVPASILNATGGNRPTASYHPTLWGEKFLDCSSADDSVAMDP---------TIDQDEFEG 57
++P ++L++ G R W EK L S D S P T D + E
Sbjct: 173 KIPTTLLHSLEGMRDLD------W-EKLLKLQSQDGSFLFSPSSTAFAFMQTRDSNCLEY 225
Query: 58 LKQKIKNMLNS-----PTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSHDEYDGN- 111
L+ +K P D F+ + ++D +QRLG++ +FE EI++ L+ + H + N
Sbjct: 226 LRNAVKRFNGGVPNVFPVD-LFEHIWIVDRLQRLGISRYFEEEIKECLDYV-HRYWTDNG 283
Query: 112 ----------DVHTVALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLIND---VAGMLS 158
D+ A+ FRLLRQ GY++S D+F F + +G+F + V GM +
Sbjct: 284 ICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNF-EKEGEFFCFVGQSNQAVTGMFN 342
Query: 159 LYEAAHLRIHGEXXXXXXXXXXXXXXXXXXXKPIRRGLPRLEAIYYIDLYSQDDSKDKAI 218
LY A+ L E I + Y ++ +++ DK I
Sbjct: 343 LYRASQLAFPRE--------------------EILKNAKEFSYNYLLEKREREELIDKWI 382
Query: 219 LLKFAKLDFCMLQVIHRKELSIITE-PLRRGLTRLEARYYNDVYSKDDS----------- 266
++K E+ E P L R+E R+Y D Y ++
Sbjct: 383 IMKDLP-----------GEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMP 431
Query: 267 --KDQTILRFAKLDFCTPKVFHRXXXXXXXXXXXXXDVKTKLPYVGDR---IVECYFWIM 321
+ L AK D+ + H+ + +L G R ++ECY+
Sbjct: 432 YVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYE----ENRLSEWGVRRSELLECYYLAA 487
Query: 322 RVYFEPPYSFGRMTLSK 338
FE S RM +K
Sbjct: 488 ATIFESERSHERMVWAK 504
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 357 EEAQLFTNAIKRGDSNITQRNIKRVERYNHINEGLLKPTEVAMPLLECILNLARVM 412
EE + N +K GD N N E N I+ G+L PT+V L+ ++A +M
Sbjct: 459 EEPSVVANTVKGGDGNYGY-NAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLM 513
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 357 EEAQLFTNAIKRGDSNITQRNIKRVERYNHINEGLLKPTEVAMPLLECILNLARVM 412
EE + N +K GD N N E N I+ G+L PT+V L+ ++A +M
Sbjct: 460 EEPSVVANTVKGGDGNYGY-NAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLM 514
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 357 EEAQLFTNAIKRGDSNITQRNIKRVERYNHINEGLLKPTEVAMPLLECILNLARVM 412
EE + N +K GD N N E N I+ G+L PT+V L+ ++A +M
Sbjct: 459 EEPSVVANTVKGGDGNYGY-NAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLM 513
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 357 EEAQLFTNAIKRGDSNITQRNIKRVERYNHINEGLLKPTEVAMPLLECILNLARVM 412
EE + N +K GD N N E N I+ G+L PT+V L+ ++A +M
Sbjct: 459 EEPSVVANTVKGGDGNYGY-NAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLM 513
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 357 EEAQLFTNAIKRGDSNITQRNIKRVERYNHINEGLLKPTEVAMPLLECILNLARVM 412
EE + N +K GD N N E N I+ G+L PT+V L+ ++A +M
Sbjct: 459 EEPSVVANTVKGGDGNYGY-NAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLM 513
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 357 EEAQLFTNAIKRGDSNITQRNIKRVERYNHINEGLLKPTEVAMPLLECILNLARVM 412
EE + N +K GD N N E N I+ G+L PT+V L+ ++A +M
Sbjct: 459 EEPSVVANTVKGGDGNYGY-NAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLM 513
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 357 EEAQLFTNAIKRGDSNITQRNIKRVERYNHINEGLLKPTEVAMPLLECILNLARVM 412
EE + N +K GD N N E N I+ G+L PT+V L+ ++A +M
Sbjct: 459 EEPSVVANTVKGGDGNYGY-NAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLM 513
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 357 EEAQLFTNAIKRGDSNITQRNIKRVERYNHINEGLLKPTEVAMPLLECILNLARVM 412
EE + N +K GD N N E N I+ G+L PT+V L+ ++A +M
Sbjct: 459 EEPSVVANTVKGGDGNYGY-NAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLM 513
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 357 EEAQLFTNAIKRGDSNITQRNIKRVERYNHINEGLLKPTEVAMPLLECILNLARVM 412
EE + N +K GD N N E N I+ G+L PT+V L+ ++A +M
Sbjct: 459 EEPSVVANTVKGGDGNYGY-NAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLM 513
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 357 EEAQLFTNAIKRGDSNITQRNIKRVERYNHINEGLLKPTEVAMPLLECILNLARVM 412
EE + N +K GD N N E N I+ G+L PT+V L+ ++A +M
Sbjct: 459 EEPSVVANTVKGGDGNYGY-NAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLM 513
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 357 EEAQLFTNAIKRGDSNITQRNIKRVERYNHINEGLLKPTEVAMPLLECILNLARVM 412
EE + N +K GD N N E N I+ G+L PT+V L+ ++A +M
Sbjct: 459 EEPSVVANTVKGGDGNYGY-NAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLM 513
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 357 EEAQLFTNAIKRGDSNITQRNIKRVERYNHINEGLLKPTEVAMPLLECILNLARVM 412
EE + N +K GD N N E N I+ G+L PT+V L+ ++A +M
Sbjct: 460 EEPSVVANTVKGGDGNYGY-NAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLM 514
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 357 EEAQLFTNAIKRGDSNITQRNIKRVERYNHINEGLLKPTEVAMPLLECILNLARVM 412
EE + N +K GD N N E N I+ G+L PT+V L+ ++A +M
Sbjct: 459 EEPSVVANTVKGGDGNYGY-NAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLM 513
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 106 DEYDGNDVHTVALRFRLLRQQGYRISCDIFSGFKDD 141
D + ++ H AL++ LL GY ++ D GF+ D
Sbjct: 60 DRFVMSNGHGCALQYALLHMAGYNLTMDDLKGFRQD 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,232,026
Number of Sequences: 62578
Number of extensions: 481552
Number of successful extensions: 1112
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1015
Number of HSP's gapped (non-prelim): 80
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)