Query 044224
Match_columns 442
No_of_seqs 214 out of 1052
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 12:39:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 9E-108 2E-112 874.6 31.6 378 20-439 1-542 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 3.7E-94 7.9E-99 790.1 26.9 353 52-442 245-778 (784)
3 PLN02592 ent-copalyl diphospha 100.0 5.1E-82 1.1E-86 692.3 28.0 353 50-441 283-800 (800)
4 PF01397 Terpene_synth: Terpen 100.0 5.7E-49 1.2E-53 367.5 10.7 158 30-203 1-165 (183)
5 PLN02150 terpene synthase/cycl 99.8 9E-20 2E-24 154.3 6.3 60 383-442 35-96 (96)
6 PF03936 Terpene_synth_C: Terp 99.7 1.7E-17 3.8E-22 160.6 3.2 102 271-372 1-102 (270)
7 cd00868 Terpene_cyclase_C1 Ter 99.4 3.4E-13 7.4E-18 131.6 7.6 88 285-372 1-88 (284)
8 cd00684 Terpene_cyclase_plant_ 99.4 3.4E-13 7.3E-18 145.5 3.7 115 112-255 143-262 (542)
9 PLN02279 ent-kaur-16-ene synth 99.2 8.8E-12 1.9E-16 139.0 3.7 119 112-256 361-496 (784)
10 PLN02592 ent-copalyl diphospha 99.2 1E-11 2.3E-16 138.2 2.6 119 112-256 407-544 (800)
11 cd00687 Terpene_cyclase_nonpla 97.2 0.00042 9E-09 69.0 5.5 79 292-371 18-98 (303)
12 cd00385 Isoprenoid_Biosyn_C1 I 90.0 0.065 1.4E-06 49.3 -1.0 47 319-365 2-48 (243)
13 PF01397 Terpene_synth: Terpen 60.6 2.7 6E-05 39.8 -0.1 49 112-188 135-183 (183)
14 PF02084 Bindin: Bindin; Inte 30.4 39 0.00085 33.2 2.5 20 108-127 122-141 (238)
15 PF11848 DUF3368: Domain of un 24.5 54 0.0012 24.1 1.8 17 122-138 27-43 (48)
16 PRK09177 xanthine-guanine phos 21.3 36 0.00078 31.2 0.4 21 343-363 87-107 (156)
17 PF00156 Pribosyltran: Phospho 20.9 44 0.00095 28.2 0.8 20 343-362 91-110 (125)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=9e-108 Score=874.57 Aligned_cols=378 Identities=46% Similarity=0.805 Sum_probs=345.8
Q ss_pred CCCCCCCCCCCcc-cccccCCCCCcCCCCCCchHHHHHHHHHHHHHHhcCC--CcChhhhhhHHHHHHHhCcccccHHHH
Q 044224 20 RPTASYHPTLWGE-KFLDCSSADDSVAMDPTIDQDEFEGLKQKIKNMLNSP--TDKSFQKLSLIDAVQRLGVAYHFEREI 96 (442)
Q Consensus 20 r~~~~~~ps~W~~-~fl~~~~~~~~~~~~~~~~~~~~~~lk~~vk~~~~~~--~~~~~~~L~lID~lqRLGi~~hFe~EI 96 (442)
||+++||||+||| .|++++++... .. .+.+++++||++||+|+... +.|++++|++||+||||||+|||++||
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~~---~~-~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI 76 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYSE---ED-ELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEI 76 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcch---hH-HHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHH
Confidence 7899999999999 66666554432 11 46789999999999999764 679999999999999999999999999
Q ss_pred HHHHHHhhcccCC-----CCChHhHHHHHHHhhhcCcccccccccceecCCCccccccchhhhhhHhHHHhhccCCCCcc
Q 044224 97 EDELEKLSHDEYD-----GNDVHTVALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLINDVAGMLSLYEAAHLRIHGED 171 (442)
Q Consensus 97 ~~~L~~i~~~~~~-----~~dL~~~Al~FRlLR~~Gy~VS~Dvf~~F~d~~g~F~~~~~~d~~glLsLYeAs~l~~~gE~ 171 (442)
+++|+++|+.|.+ ..|||+|||+|||||||||+||||||++|+|++|+|++++.+|++||||||||||+++|||+
T Consensus 77 ~~~L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~ 156 (542)
T cd00684 77 KEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGED 156 (542)
T ss_pred HHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcH
Confidence 9999999998743 47999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCccCCchhhHHhhhhccccC---CCchhHHHHHHHHHhhhhhhhHhhhhhhcccccccccc
Q 044224 172 ILDDALLSLLLTWNQWLLKPIRRGLPRLEAIYYIDLYSQ---DDSKDKAILLKFAKLDFCMLQVIHRKELSIITEPLRRG 248 (442)
Q Consensus 172 iL~eA~~fs~~~v~~~L~~P~~~~~~~Le~~~~is~y~~---~~~~~~~~Ll~~akldfn~lq~lh~~El~~L~~pl~~~ 248 (442)
|||+|+.|| + .+|++.. .+ ..++ |.+.|+ ++ |..|+|++
T Consensus 157 iLdeA~~ft------------~---~~L~~~~-----~~~~~~~~~----l~~~V~---------~a-----L~~P~~~~ 198 (542)
T cd00684 157 ILDEALSFT------------T---KHLEEKL-----ESNWIIDPD----LSGEIE---------YA-----LEIPLHAS 198 (542)
T ss_pred HHHHHHHHH------------H---HHHHHHh-----hccCCCCch----HHHHHH---------HH-----ccCchhcC
Confidence 999999999 8 8999876 32 2333 777665 66 99999999
Q ss_pred ccchhhhhhhhhcccCCCCCHHHHHHHHHhcccchhhhHHHHHHHHHHHHhcCCCCCCCCCcCchhHHHHHhhhcccCCC
Q 044224 249 LTRLEARYYNDVYSKDDSKDQTILRFAKLDFCTPKVFHRKELTTLTEWWKTLDVKTKLPYVGDRIVECYFWIMRVYFEPP 328 (442)
Q Consensus 249 L~r~r~r~yI~~y~~~~~~~~~llelAkldFn~~Q~~hq~El~~l~rWw~~~~l~~~l~faRdr~ve~yfw~~~~~~eP~ 328 (442)
+||+++|+||++|++++++|++||||||+|||+||++||+||++++|||+++||.++|||+|||++|||||++|++|||+
T Consensus 199 ~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~ 278 (542)
T cd00684 199 LPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQ 278 (542)
T ss_pred CchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCcc
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred ChhhHHHHHhhhhhhheecccccccCCHHHHHHHHHHHHhcCch------------------------------------
Q 044224 329 YSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFTNAIKRGDSN------------------------------------ 372 (442)
Q Consensus 329 ~s~~R~~~tK~~~l~~~iDD~yD~ygt~eEl~~ft~av~rWd~~------------------------------------ 372 (442)
+|.+|+++||++++++++||+||+|||+|||+.||+||+|||.+
T Consensus 279 ~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~ 358 (542)
T cd00684 279 YSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVV 358 (542)
T ss_pred chHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999999999999999999999999999964
Q ss_pred --------------------------------------------------------hhhhhHh----------------H
Q 044224 373 --------------------------------------------------------ITQRNIK----------------R 380 (442)
Q Consensus 373 --------------------------------------------------------~t~e~~~----------------R 380 (442)
+++++++ |
T Consensus 359 ~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~r 438 (542)
T cd00684 359 PYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGR 438 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHH
Confidence 2333333 1
Q ss_pred --------------------HHH-----------------------hHHHHHhhcCC-CCCcHHHHHHHHHHhhhhcccc
Q 044224 381 --------------------VER-----------------------YNHINEGLLKP-TEVAMPLLECILNLARVMDVIY 416 (442)
Q Consensus 381 --------------------v~c-----------------------WK~mNee~l~~-s~~p~~~~~~~lNlaR~~~~~Y 416 (442)
|+| ||+||++++++ +++|++++++++|+||+++++|
T Consensus 439 L~NDi~S~~kE~~rGdv~n~V~~ymke~g~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y 518 (542)
T cd00684 439 LMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFY 518 (542)
T ss_pred HhcChhhhHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 444 99999999988 7899999999999999999999
Q ss_pred ccCCCCCCc-hhHHHHHhhhcccc
Q 044224 417 KDDDGYTNS-YVIKDYIATLLEKL 439 (442)
Q Consensus 417 k~gDg~t~~-~~lKd~I~sLlv~P 439 (442)
++|||||.| +.+|++|++||++|
T Consensus 519 ~~~D~~t~~~~~~~~~i~~ll~~p 542 (542)
T cd00684 519 KEGDGFTHPEGEIKDHITSLLFEP 542 (542)
T ss_pred cCCCCCCCccHHHHHHHHHHhcCC
Confidence 999999998 78999999999998
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=3.7e-94 Score=790.11 Aligned_cols=353 Identities=24% Similarity=0.402 Sum_probs=314.8
Q ss_pred HHHHHHHHHHHHHHhcCC----CcChhhhhhHHHHHHHhCcccccHHHHHHHHHHhhcccCC-----CCChHhHHHHHHH
Q 044224 52 QDEFEGLKQKIKNMLNSP----TDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSHDEYD-----GNDVHTVALRFRL 122 (442)
Q Consensus 52 ~~~~~~lk~~vk~~~~~~----~~~~~~~L~lID~lqRLGi~~hFe~EI~~~L~~i~~~~~~-----~~dL~~~Al~FRl 122 (442)
.+..++|...+++.-.+. |.+.++++|+||+||||||+|||++||+++|+++|+.|.. ..|||+|||+|||
T Consensus 245 ~~~~~yL~~~~~~~~g~vP~~yp~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRL 324 (784)
T PLN02279 245 AGCLRYLRSLLQKFGNAVPTVYPLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEIFLDLATCALAFRI 324 (784)
T ss_pred hHHHHHHHHHHHhcCCCCCCCCcccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHH
Confidence 467789999998876553 5789999999999999999999999999999999997742 2699999999999
Q ss_pred hhhcCcccccccccceecCCCcccccc---chhhhhhHhHHHhhccCCCCcchHHHHHHHHHHHHHHhhcCCccCCchhh
Q 044224 123 LRQQGYRISCDIFSGFKDDQGKFKVSL---INDVAGMLSLYEAAHLRIHGEDILDDALLSLLLTWNQWLLKPIRRGLPRL 199 (442)
Q Consensus 123 LR~~Gy~VS~Dvf~~F~d~~g~F~~~~---~~d~~glLsLYeAs~l~~~gE~iL~eA~~fs~~~v~~~L~~P~~~~~~~L 199 (442)
||||||+||||||++|+|+ + |++++ .+|++||||||||||+++|||+|||+|+.|| + .+|
T Consensus 325 LR~hGy~VS~dvf~~F~~~-~-F~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs------------~---~~L 387 (784)
T PLN02279 325 LRLNGYDVSSDPLKQFAED-H-FSDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWT------------S---HFL 387 (784)
T ss_pred HHHcCCCCChhHHhhcCCC-c-ccchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHH------------H---HHH
Confidence 9999999999999999955 4 99887 5899999999999999999999999999999 8 888
Q ss_pred HHhhhhccccCC---CchhHHHHHHHHHhhhhhhhHhhhhhhccccccccccccchhhhhhhhhcccCCC----------
Q 044224 200 EAIYYIDLYSQD---DSKDKAILLKFAKLDFCMLQVIHRKELSIITEPLRRGLTRLEARYYNDVYSKDDS---------- 266 (442)
Q Consensus 200 e~~~~is~y~~~---~~~~~~~Ll~~akldfn~lq~lh~~El~~L~~pl~~~L~r~r~r~yI~~y~~~~~---------- 266 (442)
+... ... +......|.++|+ |+ |+.|+|++|||+++|+||++|++++.
T Consensus 388 ~~~~-----~~~~~~~~~~~~~L~~eV~---------~A-----L~~P~~~~l~RlEaR~yI~~Y~~~~~~i~Kt~yr~~ 448 (784)
T PLN02279 388 EQGL-----SNWSKTADRLRKYIKKEVE---------DA-----LNFPYYANLERLANRRSIENYAVDDTRILKTSYRCS 448 (784)
T ss_pred HHHH-----hcccccccccCccHHHHHH---------HH-----hcCchhcCccHHHHHHHHHHhccccchhcccccccc
Confidence 8765 210 0000012666554 56 99999999999999999999998885
Q ss_pred --CCHHHHHHHHHhcccchhhhHHHHHHHHHHHHhcCCCCCCCCCcCchhHHHHHhhhcccCCCChhhHHHHHhhhhhhh
Q 044224 267 --KDQTILRFAKLDFCTPKVFHRKELTTLTEWWKTLDVKTKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFIS 344 (442)
Q Consensus 267 --~~~~llelAkldFn~~Q~~hq~El~~l~rWw~~~~l~~~l~faRdr~ve~yfw~~~~~~eP~~s~~R~~~tK~~~l~~ 344 (442)
+|+++|||||+|||+||++||+||++|+|||+++|| .+|||||||++|||||++|++|||+||.+|++|||+++|+|
T Consensus 449 ~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L-~~L~faRdr~ve~Yf~aaa~~fEPe~S~aRi~~aK~~~L~t 527 (784)
T PLN02279 449 NICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRL-DKLKFARQKLAYCYFSAAATLFSPELSDARLSWAKNGVLTT 527 (784)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCC-ccCCchhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999 59999999999999999999999999999999999999999
Q ss_pred eecccccccCCHHHHHHHHHHHHhcCch----------------------------------------------------
Q 044224 345 IIDNTYDAYSAIEEAQLFTNAIKRGDSN---------------------------------------------------- 372 (442)
Q Consensus 345 ~iDD~yD~ygt~eEl~~ft~av~rWd~~---------------------------------------------------- 372 (442)
+|||+||+|||+|||++||+||+|||++
T Consensus 528 viDD~fD~yGt~eEL~~ft~aVeRWD~~~~~~~lpeymki~f~aL~~t~nei~~~~~~~qGr~v~~~l~~aW~~ll~ayl 607 (784)
T PLN02279 528 VVDDFFDVGGSEEELENLIQLVEKWDVNGSPDFCSEQVEIIFSALRSTISEIGDKAFTWQGRNVTSHIIKIWLDLLKSML 607 (784)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHhccccchhhCcHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999976
Q ss_pred -----------------------------------------hhhhhHh---------------H----------------
Q 044224 373 -----------------------------------------ITQRNIK---------------R---------------- 380 (442)
Q Consensus 373 -----------------------------------------~t~e~~~---------------R---------------- 380 (442)
+++|+++ |
T Consensus 608 ~EAeW~~~g~vPT~eEYL~na~vS~~l~~i~l~~~~~~G~~l~eev~e~~~~~~L~~l~s~I~RLlNDI~S~e~E~~rG~ 687 (784)
T PLN02279 608 TEAQWSSNKSTPTLDEYMTNAYVSFALGPIVLPALYLVGPKLSEEVVDSPELHKLYKLMSTCGRLLNDIRGFKRESKEGK 687 (784)
T ss_pred HHHHHHhcCCCCCHHHHHhhchhhhhhHHHHHHHHHHhCCCCCHHHHhCcchhHHHHHHHHHHHHHHhccccHhHHhCCC
Confidence 2233332 1
Q ss_pred ---HHH-------------------------hHHHHHhhcCC--CCCcHHHHHHHHHHhhhhccccccCCCCCCchhHHH
Q 044224 381 ---VER-------------------------YNHINEGLLKP--TEVAMPLLECILNLARVMDVIYKDDDGYTNSYVIKD 430 (442)
Q Consensus 381 ---v~c-------------------------WK~mNee~l~~--s~~p~~~~~~~lNlaR~~~~~Yk~gDg~t~~~~lKd 430 (442)
|+| ||+||++++++ +++|+++++.++|++|+++++|++|||||.+ .+|+
T Consensus 688 ~nsV~cYMke~~~gvSeEEAi~~i~~~Ie~~wKeLn~~~l~~~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~-~~k~ 766 (784)
T PLN02279 688 LNAVSLHMIHGNGNSTEEEAIESMKGLIESQRRELLRLVLQEKGSNVPRECKDLFWKMSKVLHLFYRKDDGFTSN-DMMS 766 (784)
T ss_pred cceehhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhhhhheeCCCCCChH-HHHH
Confidence 444 99999999964 5799999999999999999999999999975 7999
Q ss_pred HHhhhccccccC
Q 044224 431 YIATLLEKLVPF 442 (442)
Q Consensus 431 ~I~sLlv~PIpl 442 (442)
+|++||++|||+
T Consensus 767 ~i~~ll~ePi~l 778 (784)
T PLN02279 767 LVKSVIYEPVSL 778 (784)
T ss_pred HHHHHhccCCcC
Confidence 999999999985
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=5.1e-82 Score=692.27 Aligned_cols=353 Identities=23% Similarity=0.380 Sum_probs=301.7
Q ss_pred chHHHHHHHHHHHHHHhcCC----CcChhhhhhHHHHHHHhCcccccHHHHHHHHHHhhcccCC----------CCChHh
Q 044224 50 IDQDEFEGLKQKIKNMLNSP----TDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSHDEYD----------GNDVHT 115 (442)
Q Consensus 50 ~~~~~~~~lk~~vk~~~~~~----~~~~~~~L~lID~lqRLGi~~hFe~EI~~~L~~i~~~~~~----------~~dL~~ 115 (442)
...+..++|...|++.-.+. |.+++++|++||+||||||+|||++||+++|+++|+.|.. ..|||+
T Consensus 283 ~d~~cl~YL~~~~~k~~GgVP~vyP~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~ 362 (800)
T PLN02592 283 KDENCLEYLNKAVQRFNGGVPNVYPVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDD 362 (800)
T ss_pred CchHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHH
Confidence 33567789999999876543 5799999999999999999999999999999999985421 269999
Q ss_pred HHHHHHHhhhcCcccccccccceecCCCcccccc---chhhhhhHhHHHhhccCCCCcchHHHHHHHHHHHHHHhhcCCc
Q 044224 116 VALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSL---INDVAGMLSLYEAAHLRIHGEDILDDALLSLLLTWNQWLLKPI 192 (442)
Q Consensus 116 ~Al~FRlLR~~Gy~VS~Dvf~~F~d~~g~F~~~~---~~d~~glLsLYeAs~l~~~gE~iL~eA~~fs~~~v~~~L~~P~ 192 (442)
|||+||+||||||+||+|||++|++ +|+|++.+ .+|++|||+||||||+++|||.|||+|+.||
T Consensus 363 TALaFRLLRqhGy~VS~DvF~~F~~-~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs------------ 429 (800)
T PLN02592 363 TAMGFRLLRLHGHQVSADVFKHFEK-GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFS------------ 429 (800)
T ss_pred HHHHHHHHHHcCCCCChHHHHhhcC-CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHH------------
Confidence 9999999999999999999999996 89998655 7899999999999999999999999999999
Q ss_pred cCCchhhHHhhhhccccCC-Cch-hHHHHHHHHHhhhhhhhHhhhhhhccccccccccccchhhhhhhhhcccCCCC---
Q 044224 193 RRGLPRLEAIYYIDLYSQD-DSK-DKAILLKFAKLDFCMLQVIHRKELSIITEPLRRGLTRLEARYYNDVYSKDDSK--- 267 (442)
Q Consensus 193 ~~~~~~Le~~~~is~y~~~-~~~-~~~~Ll~~akldfn~lq~lh~~El~~L~~pl~~~L~r~r~r~yI~~y~~~~~~--- 267 (442)
+ .+|+...-. .+. +.+ +...|.++|+ |+ |+.|+|++|||+++|+||++|+++++.
T Consensus 430 ~---~~L~~~~~~---~~l~d~~~~~~~L~~eV~---------~A-----L~~P~~~~l~RlEaR~yI~~Y~~~~~~~i~ 489 (800)
T PLN02592 430 S---KFLREKQEA---NELLDKWIIMKDLPGEVG---------FA-----LEIPWYASLPRVETRFYIEQYGGEDDVWIG 489 (800)
T ss_pred H---HHHHHHhhc---cccccccccCccHHHHHH---------Hh-----ccChhhcCcchHHHHHHHHHhcCCcccchh
Confidence 7 788775410 011 000 0011666554 56 999999999999999999999987764
Q ss_pred ----------CHHHHHHHHHhcccchhhhHHHHHHHHHHHHhcCCCCCCCCCcCchhHHHHHhhhcccCCCChhhHHHHH
Q 044224 268 ----------DQTILRFAKLDFCTPKVFHRKELTTLTEWWKTLDVKTKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLS 337 (442)
Q Consensus 268 ----------~~~llelAkldFn~~Q~~hq~El~~l~rWw~~~~l~~~l~faRdr~ve~yfw~~~~~~eP~~s~~R~~~t 337 (442)
|+.||||||+|||+||++||+||++|+||||++||. +|||||||++|||||++|++|||+||.+|++||
T Consensus 490 Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L~-~L~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~a 568 (800)
T PLN02592 490 KTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNLG-EFGVSRSELLLAYFLAAASIFEPERSHERLAWA 568 (800)
T ss_pred hhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCCC-cCCcchhHHHHHHHHHHHhhcCccchHHHHHHH
Confidence 999999999999999999999999999999999995 999999999999999999999999999999999
Q ss_pred hhhhhhheecccccccCCHHHHHHHHHHHH--------hcCchh------------------------------------
Q 044224 338 KIIPFISIIDNTYDAYSAIEEAQLFTNAIK--------RGDSNI------------------------------------ 373 (442)
Q Consensus 338 K~~~l~~~iDD~yD~ygt~eEl~~ft~av~--------rWd~~~------------------------------------ 373 (442)
|+++|+|+|||+||+|||+|||++||+||+ |||.+.
T Consensus 569 K~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~~~~~~rWd~~~~~~lp~~~~~~~~mki~f~aLy~tineia~~a~~~q 648 (800)
T PLN02592 569 KTTVLVEAISSYFNKETSSKQRRAFLHEFGYGYKINGRRSDHHFNDRNMRRSGSVKTGEELVGLLLGTLNQLSLDALEAH 648 (800)
T ss_pred HHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccccccccCchhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999997 999531
Q ss_pred ---------------------------------------------hhhhHh------------H----------------
Q 044224 374 ---------------------------------------------TQRNIK------------R---------------- 380 (442)
Q Consensus 374 ---------------------------------------------t~e~~~------------R---------------- 380 (442)
++|+++ |
T Consensus 649 Gr~v~~~L~~~W~~l~~~w~~~g~~s~~~~~ilv~~~~l~~g~~lsee~l~~~~~~~l~~li~Rl~nDl~t~~~e~~~~~ 728 (800)
T PLN02592 649 GRDISHLLRHAWEMWLLKWLLEGDGRQGEAELLVKTINLTAGRSLSEELLAHPQYEQLAQLTNRICYQLGHYKKNKVHIN 728 (800)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCceeccchhhHHHHHHHhcCCCCCHHHccchhHHHHHHHHHHHHHhhhHHhhhcccCC
Confidence 111111 1
Q ss_pred -------------HHH-hHHHHHhhcCC--CCCcHHHHHHHHHHhhhhccccccCCCCCCchhHHHHHhhhcccccc
Q 044224 381 -------------VER-YNHINEGLLKP--TEVAMPLLECILNLARVMDVIYKDDDGYTNSYVIKDYIATLLEKLVP 441 (442)
Q Consensus 381 -------------v~c-WK~mNee~l~~--s~~p~~~~~~~lNlaR~~~~~Yk~gDg~t~~~~lKd~I~sLlv~PIp 441 (442)
|+. .+++.+..+.. +.+|+++.+..+|++| ++|.. ||+.|.+++.+|..++++||+
T Consensus 729 ~~~~~a~~~~~~~ie~~~~eL~~lvl~~~~~~vp~~cK~~f~~~~k---~fy~~--~~~~~~~~~~~i~~vl~epv~ 800 (800)
T PLN02592 729 TYNPEEKSKTTPSIESDMQELVQLVLQNSSDDIDPVIKQTFLMVAK---SFYYA--AYCDPGTINYHIAKVLFERVA 800 (800)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH---HHHHh--hcCCHHHHHHHHHHHhCCCCC
Confidence 211 77777777752 4699999999999999 44554 999888899999999999996
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=5.7e-49 Score=367.51 Aligned_cols=158 Identities=46% Similarity=0.789 Sum_probs=132.7
Q ss_pred Cccccccc-CCCCCc--CCCCCCchHHHHHHHHHHHHHHhcCCCcChhhhhhHHHHHHHhCcccccHHHHHHHHHHhhcc
Q 044224 30 WGEKFLDC-SSADDS--VAMDPTIDQDEFEGLKQKIKNMLNSPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSHD 106 (442)
Q Consensus 30 W~~~fl~~-~~~~~~--~~~~~~~~~~~~~~lk~~vk~~~~~~~~~~~~~L~lID~lqRLGi~~hFe~EI~~~L~~i~~~ 106 (442)
|||+||+. +|.+.. .. ....+.++++.||++||+|+.....++.++|+|||+||||||+|||++||+++|+++|+.
T Consensus 1 W~d~fl~s~s~~~~~~~~~-~~~~~~~~~~~Lk~~v~~~l~~~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~ 79 (183)
T PF01397_consen 1 WGDDFLQSLSPSYTACMQS-EDEKCKERAEELKEEVRNMLPASYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRS 79 (183)
T ss_dssp TTHHHHHHTBHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHT
T ss_pred CCCceecCCCCcchhccch-hHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhh
Confidence 99999942 221110 00 123678899999999999998744489999999999999999999999999999999998
Q ss_pred cCCC----CChHhHHHHHHHhhhcCcccccccccceecCCCccccccchhhhhhHhHHHhhccCCCCcchHHHHHHHHHH
Q 044224 107 EYDG----NDVHTVALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLINDVAGMLSLYEAAHLRIHGEDILDDALLSLLL 182 (442)
Q Consensus 107 ~~~~----~dL~~~Al~FRlLR~~Gy~VS~Dvf~~F~d~~g~F~~~~~~d~~glLsLYeAs~l~~~gE~iL~eA~~fs~~ 182 (442)
|... .|||+|||+|||||||||+||||||++|+|++|+|+.++++|++|||+||||||++++||+|||+|+.||
T Consensus 80 ~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft-- 157 (183)
T PF01397_consen 80 WDEDNEEIDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILDEARAFT-- 157 (183)
T ss_dssp TTTTSHTSSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHHHHHHHH--
T ss_pred ccccccccCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHHHHHHHH--
Confidence 7543 3999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCccCCchhhHHhh
Q 044224 183 TWNQWLLKPIRRGLPRLEAIY 203 (442)
Q Consensus 183 ~v~~~L~~P~~~~~~~Le~~~ 203 (442)
+ .+|++..
T Consensus 158 ----------~---~~L~~~~ 165 (183)
T PF01397_consen 158 ----------T---KHLKSLL 165 (183)
T ss_dssp ----------H---HHHHHHH
T ss_pred ----------H---HHHHHHh
Confidence 8 8999876
No 5
>PLN02150 terpene synthase/cyclase family protein
Probab=99.79 E-value=9e-20 Score=154.33 Aligned_cols=60 Identities=37% Similarity=0.610 Sum_probs=57.8
Q ss_pred HhHHHHHhhcCCCCCcHHHHHHHHHHhhhhccc-cccCCCCCCc-hhHHHHHhhhccccccC
Q 044224 383 RYNHINEGLLKPTEVAMPLLECILNLARVMDVI-YKDDDGYTNS-YVIKDYIATLLEKLVPF 442 (442)
Q Consensus 383 cWK~mNee~l~~s~~p~~~~~~~lNlaR~~~~~-Yk~gDg~t~~-~~lKd~I~sLlv~PIpl 442 (442)
.||+||+|+++++++|.+|+++++|+||+++|+ |++|||||.+ +.+|++|.+||++|||+
T Consensus 35 ~WK~iN~e~l~~~~~p~~~~~~~~NlaR~~~~~~Y~~~Dg~t~~~~~~K~~I~sLlv~pi~i 96 (96)
T PLN02150 35 NYKIVMEEFLTIKDVPRPVLVRCLNLARLIDVYCYNEGDGFTYPHGKLKDLITSLFFHPLPL 96 (96)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhheecCCCCCCCCcHHHHHHHHHHhccCCCC
Confidence 399999999999999999999999999999999 9999999988 78999999999999996
No 6
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=99.67 E-value=1.7e-17 Score=160.64 Aligned_cols=102 Identities=25% Similarity=0.410 Sum_probs=97.7
Q ss_pred HHHHHHHhcccchhhhHHHHHHHHHHHHhcCCCCCCCCCcCchhHHHHHhhhcccCCCChhhHHHHHhhhhhhheecccc
Q 044224 271 ILRFAKLDFCTPKVFHRKELTTLTEWWKTLDVKTKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTY 350 (442)
Q Consensus 271 llelAkldFn~~Q~~hq~El~~l~rWw~~~~l~~~l~faRdr~ve~yfw~~~~~~eP~~s~~R~~~tK~~~l~~~iDD~y 350 (442)
+|+|||+|||.||..||+|++++++||+++|+..+.+.+|+|++.+|||.++.++.|..+..|+.+||.++++.++||+|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 58999999999999999999999999999999768888999999999999999999998888999999999999999999
Q ss_pred cccCCHHHHHHHHHHHHhcCch
Q 044224 351 DAYSAIEEAQLFTNAIKRGDSN 372 (442)
Q Consensus 351 D~ygt~eEl~~ft~av~rWd~~ 372 (442)
|..|+.++++.|+++++|||..
T Consensus 81 D~~~~~~~~~~l~~~~~~~~~~ 102 (270)
T PF03936_consen 81 DDGGSAEELEALTDAVERWDPN 102 (270)
T ss_dssp HTTSHHHHHHHHHHHHHHTSSG
T ss_pred ccccchHHHHHHHHHHhccccc
Confidence 9999999999999999999864
No 7
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=99.41 E-value=3.4e-13 Score=131.59 Aligned_cols=88 Identities=49% Similarity=1.023 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCCCcCchhHHHHHhhhcccCCCChhhHHHHHhhhhhhheecccccccCCHHHHHHHHH
Q 044224 285 FHRKELTTLTEWWKTLDVKTKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFTN 364 (442)
Q Consensus 285 ~hq~El~~l~rWw~~~~l~~~l~faRdr~ve~yfw~~~~~~eP~~s~~R~~~tK~~~l~~~iDD~yD~ygt~eEl~~ft~ 364 (442)
.||+|++++++||++.|+....+++|.+..++|+|+++++|+|+.+..|+.+||.++++.++||.||.+|+.+|+..|++
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~ 80 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTE 80 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 48999999999999999976666999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCch
Q 044224 365 AIKRGDSN 372 (442)
Q Consensus 365 av~rWd~~ 372 (442)
+++||+..
T Consensus 81 ~~~~~~~~ 88 (284)
T cd00868 81 AVERWDIS 88 (284)
T ss_pred HHHhcChh
Confidence 99999965
No 8
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=99.35 E-value=3.4e-13 Score=145.51 Aligned_cols=115 Identities=33% Similarity=0.492 Sum_probs=93.2
Q ss_pred ChHhHHHHHHHhhhcCcccccccccceecCCCccccccchhhhhhHhHHHhhccCCCCcchHHHHHHHHHHHHHHhhcCC
Q 044224 112 DVHTVALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLINDVAGMLSLYEAAHLRIHGEDILDDALLSLLLTWNQWLLKP 191 (442)
Q Consensus 112 dL~~~Al~FRlLR~~Gy~VS~Dvf~~F~d~~g~F~~~~~~d~~glLsLYeAs~l~~~gE~iL~eA~~fs~~~v~~~L~~P 191 (442)
+||+|| .|+.+| +++++ +...|+..+ ++.+++ +. .+++ ...+++|++||+.|
T Consensus 143 ~Ly~As----~l~~~g----E~iLd----eA~~ft~~~---L~~~~~----~~------~~~~---~~l~~~V~~aL~~P 194 (542)
T cd00684 143 SLYEAS----HLSFPG----EDILD----EALSFTTKH---LEEKLE----SN------WIID---PDLSGEIEYALEIP 194 (542)
T ss_pred HHHHHh----hcCCCC----cHHHH----HHHHHHHHH---HHHHhh----cc------CCCC---chHHHHHHHHccCc
Confidence 799999 999999 66666 667787555 455543 11 1111 13468999999999
Q ss_pred ccCCchhhHHhhhhccccCCCchhHHHHHHHHHhhhhhhhHhhhhhhccccc-----cccccccchhhh
Q 044224 192 IRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFCMLQVIHRKELSIITE-----PLRRGLTRLEAR 255 (442)
Q Consensus 192 ~~~~~~~Le~~~~is~y~~~~~~~~~~Ll~~akldfn~lq~lh~~El~~L~~-----pl~~~L~r~r~r 255 (442)
+|+++||||++.||+.|++.+.++ +.||++||+|||++|.+|++|++.+++ +|...|+++|+|
T Consensus 195 ~~~~~~rlear~yi~~Y~~~~~~n-~~lLelAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr 262 (542)
T cd00684 195 LHASLPRLEARWYIEFYEQEDDHN-ETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDR 262 (542)
T ss_pred hhcCCchHHHHHHHHHhCCCcccc-HHHHHHHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCcccch
Confidence 999999999999999999776554 359999999999999999999999997 777788999988
No 9
>PLN02279 ent-kaur-16-ene synthase
Probab=99.19 E-value=8.8e-12 Score=138.99 Aligned_cols=119 Identities=22% Similarity=0.245 Sum_probs=92.4
Q ss_pred ChHhHHHHHHHhhhcCcccccccccceecCCCccccccchhhhhhHhHHHhhccCCCCcchHHHHHHHHHHHHHHhhcCC
Q 044224 112 DVHTVALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLINDVAGMLSLYEAAHLRIHGEDILDDALLSLLLTWNQWLLKP 191 (442)
Q Consensus 112 dL~~~Al~FRlLR~~Gy~VS~Dvf~~F~d~~g~F~~~~~~d~~glLsLYeAs~l~~~gE~iL~eA~~fs~~~v~~~L~~P 191 (442)
+||.+| .|+.+| +++++ +.+.|+..+ ++..++ ....++. +++ ....++|++||+.|
T Consensus 361 ~LY~AS----~l~~~g----E~iLd----eA~~Fs~~~---L~~~~~-----~~~~~~~-~~~---~~L~~eV~~AL~~P 416 (784)
T PLN02279 361 ELFRAS----QISYPD----ESLLE----KQNSWTSHF---LEQGLS-----NWSKTAD-RLR---KYIKKEVEDALNFP 416 (784)
T ss_pred HHHHHH----hcCCCc----cHHHH----HHHHHHHHH---HHHHHh-----ccccccc-ccC---ccHHHHHHHHhcCc
Confidence 699999 999999 66776 667787655 444432 1111111 222 23568999999999
Q ss_pred ccCCchhhHHhhhhccccCCCc------------hhHHHHHHHHHhhhhhhhHhhhhhhccccc-----cccccccchhh
Q 044224 192 IRRGLPRLEAIYYIDLYSQDDS------------KDKAILLKFAKLDFCMLQVIHRKELSIITE-----PLRRGLTRLEA 254 (442)
Q Consensus 192 ~~~~~~~Le~~~~is~y~~~~~------------~~~~~Ll~~akldfn~lq~lh~~El~~L~~-----pl~~~L~r~r~ 254 (442)
+|++++|||++.||+.|+..+. ++ ..|+++||+|||++|.+|++|++.|++ ++. .|+|+|+
T Consensus 417 ~~~~l~RlEaR~yI~~Y~~~~~~i~Kt~yr~~~~~n-~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L~-~L~faRd 494 (784)
T PLN02279 417 YYANLERLANRRSIENYAVDDTRILKTSYRCSNICN-QDFLKLAVEDFNFCQSIHREELKQLERWIVENRLD-KLKFARQ 494 (784)
T ss_pred hhcCccHHHHHHHHHHhccccchhcccccccccccc-HHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCCc-cCCchhh
Confidence 9999999999999999986542 33 459999999999999999999999998 674 9999999
Q ss_pred hh
Q 044224 255 RY 256 (442)
Q Consensus 255 r~ 256 (442)
|-
T Consensus 495 r~ 496 (784)
T PLN02279 495 KL 496 (784)
T ss_pred HH
Confidence 83
No 10
>PLN02592 ent-copalyl diphosphate synthase
Probab=99.16 E-value=1e-11 Score=138.18 Aligned_cols=119 Identities=23% Similarity=0.310 Sum_probs=90.4
Q ss_pred ChHhHHHHHHHhhhcCcccccccccceecCCCccccccchhhhhhHhHHHhhccCCCCcchHHH--HHHHHHHHHHHhhc
Q 044224 112 DVHTVALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLINDVAGMLSLYEAAHLRIHGEDILDD--ALLSLLLTWNQWLL 189 (442)
Q Consensus 112 dL~~~Al~FRlLR~~Gy~VS~Dvf~~F~d~~g~F~~~~~~d~~glLsLYeAs~l~~~gE~iL~e--A~~fs~~~v~~~L~ 189 (442)
+||.+| .|+.+| +++++ +.+.|+..+ ++..++ ..++ ++. ......++|+|||+
T Consensus 407 ~LYeAS----~l~~~g----E~iLd----eA~~Fs~~~---L~~~~~---~~~l-------~d~~~~~~~L~~eV~~AL~ 461 (800)
T PLN02592 407 NLYRAS----QVLFPG----EKILE----NAKEFSSKF---LREKQE---ANEL-------LDKWIIMKDLPGEVGFALE 461 (800)
T ss_pred HHHHHH----hcCCCc----chHHH----HHHHHHHHH---HHHHhh---cccc-------ccccccCccHHHHHHHhcc
Confidence 689999 999999 66665 566777555 333332 1111 111 01134689999999
Q ss_pred CCccCCchhhHHhhhhccccCCCch------------hHHHHHHHHHhhhhhhhHhhhhhhccccc-----cccccccch
Q 044224 190 KPIRRGLPRLEAIYYIDLYSQDDSK------------DKAILLKFAKLDFCMLQVIHRKELSIITE-----PLRRGLTRL 252 (442)
Q Consensus 190 ~P~~~~~~~Le~~~~is~y~~~~~~------------~~~~Ll~~akldfn~lq~lh~~El~~L~~-----pl~~~L~r~ 252 (442)
.|+|++++|||++.||+.|++.+.. ..+.||++||+|||++|.+|++|++.+++ +|. .|+|+
T Consensus 462 ~P~~~~l~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L~-~L~fa 540 (800)
T PLN02592 462 IPWYASLPRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNLG-EFGVS 540 (800)
T ss_pred ChhhcCcchHHHHHHHHHhcCCcccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCCC-cCCcc
Confidence 9999999999999999999854321 11459999999999999999999999998 776 79999
Q ss_pred hhhh
Q 044224 253 EARY 256 (442)
Q Consensus 253 r~r~ 256 (442)
|+|-
T Consensus 541 Rdr~ 544 (800)
T PLN02592 541 RSEL 544 (800)
T ss_pred hhHH
Confidence 9993
No 11
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=97.24 E-value=0.00042 Score=69.01 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=67.9
Q ss_pred HHHHHHHhcCCCCCCCCCcCchhHHHHHhhhcccCCCChhhHHHHH-hhhhhhheeccccccc-CCHHHHHHHHHHHHhc
Q 044224 292 TLTEWWKTLDVKTKLPYVGDRIVECYFWIMRVYFEPPYSFGRMTLS-KIIPFISIIDNTYDAY-SAIEEAQLFTNAIKRG 369 (442)
Q Consensus 292 ~l~rWw~~~~l~~~l~faRdr~ve~yfw~~~~~~eP~~s~~R~~~t-K~~~l~~~iDD~yD~y-gt~eEl~~ft~av~rW 369 (442)
+...|.++.|+. .-+.+|++.++++|+.++.++.|+.+..|+.++ +.+.++.++||.||.. ++.++++.+++.+.++
T Consensus 18 ~~~~w~~~~~l~-~~~~~~~~~~~~~~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~~~~~~ 96 (303)
T cd00687 18 EYLEWVLEEMLI-PSEKAEKRFLSADFGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGVTRLLDI 96 (303)
T ss_pred HHHHHHHHcCCC-CcchhHHHHhcCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHHHHHhc
Confidence 367898888663 344899999999999999999999999999665 9999999999999998 4999999999877776
Q ss_pred Cc
Q 044224 370 DS 371 (442)
Q Consensus 370 d~ 371 (442)
..
T Consensus 97 ~~ 98 (303)
T cd00687 97 LR 98 (303)
T ss_pred cC
Confidence 54
No 12
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=90.00 E-value=0.065 Score=49.29 Aligned_cols=47 Identities=19% Similarity=0.087 Sum_probs=40.4
Q ss_pred HhhhcccCCCChhhHHHHHhhhhhhheecccccccCCHHHHHHHHHH
Q 044224 319 WIMRVYFEPPYSFGRMTLSKIIPFISIIDNTYDAYSAIEEAQLFTNA 365 (442)
Q Consensus 319 w~~~~~~eP~~s~~R~~~tK~~~l~~~iDD~yD~ygt~eEl~~ft~a 365 (442)
|+++++++|+++..|..++++..+..++||++|..++..+.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~ 48 (243)
T cd00385 2 RPLAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLA 48 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhh
Confidence 56788999999999999999999999999999999887766555443
No 13
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=60.57 E-value=2.7 Score=39.80 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=30.4
Q ss_pred ChHhHHHHHHHhhhcCcccccccccceecCCCccccccchhhhhhHhHHHhhccCCCCcchHHHHHHHHHHHHHHhh
Q 044224 112 DVHTVALRFRLLRQQGYRISCDIFSGFKDDQGKFKVSLINDVAGMLSLYEAAHLRIHGEDILDDALLSLLLTWNQWL 188 (442)
Q Consensus 112 dL~~~Al~FRlLR~~Gy~VS~Dvf~~F~d~~g~F~~~~~~d~~glLsLYeAs~l~~~gE~iL~eA~~fs~~~v~~~L 188 (442)
+||+|| .||.+| +++++ +...|+..+ ++.+++ +...+.. ..+++|++||
T Consensus 135 sLYeAS----~l~~~g----E~iLd----eA~~Ft~~~---L~~~~~-----~~~~~~~--------~L~~~V~~AL 183 (183)
T PF01397_consen 135 SLYEAS----HLRFHG----EDILD----EARAFTTKH---LKSLLS-----NLSIPDP--------HLAKEVKHAL 183 (183)
T ss_dssp HHHHHH----TT--TT-----HHHH----HHHHHHHHH---HHHHHT-----TTCTTSC--------HHHHHHHHHH
T ss_pred HHHHHH----HccCCC----hHHHH----HHHHHHHHH---HHHHhc-----cCCCCcH--------HHHHHHHHhC
Confidence 699999 999999 55665 556676554 666665 4544432 2356777776
No 14
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=30.36 E-value=39 Score=33.20 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=17.5
Q ss_pred CCCCChHhHHHHHHHhhhcC
Q 044224 108 YDGNDVHTVALRFRLLRQQG 127 (442)
Q Consensus 108 ~~~~dL~~~Al~FRlLR~~G 127 (442)
.+.+|-|+.-|..|+||.|-
T Consensus 122 VDINDPYDlGLLLRhLRHHS 141 (238)
T PF02084_consen 122 VDINDPYDLGLLLRHLRHHS 141 (238)
T ss_pred cccCChhhHHHHHHHHHHHH
Confidence 45679999999999999985
No 15
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=24.54 E-value=54 Score=24.12 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=12.5
Q ss_pred HhhhcCcccccccccce
Q 044224 122 LLRQQGYRISCDIFSGF 138 (442)
Q Consensus 122 lLR~~Gy~VS~Dvf~~F 138 (442)
-|+++|+++|+++++.+
T Consensus 27 ~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 27 RLQQAGFRISPKLIEEI 43 (48)
T ss_pred HHHHcCcccCHHHHHHH
Confidence 45778888888877654
No 16
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=21.26 E-value=36 Score=31.20 Aligned_cols=21 Identities=10% Similarity=0.161 Sum_probs=17.7
Q ss_pred hheecccccccCCHHHHHHHH
Q 044224 343 ISIIDNTYDAYSAIEEAQLFT 363 (442)
Q Consensus 343 ~~~iDD~yD~ygt~eEl~~ft 363 (442)
+.++||+.|..+|+.++....
T Consensus 87 VLIVDDIiDTG~Tl~~v~~~l 107 (156)
T PRK09177 87 FLVVDDLVDTGGTARAVREMY 107 (156)
T ss_pred EEEEeeeeCCHHHHHHHHHHH
Confidence 467899999999999887554
No 17
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=20.94 E-value=44 Score=28.19 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=16.4
Q ss_pred hheecccccccCCHHHHHHH
Q 044224 343 ISIIDNTYDAYSAIEEAQLF 362 (442)
Q Consensus 343 ~~~iDD~yD~ygt~eEl~~f 362 (442)
+.++||++|..+|+.++..+
T Consensus 91 vliVDDvi~tG~Tl~~~~~~ 110 (125)
T PF00156_consen 91 VLIVDDVIDTGGTLKEAIEL 110 (125)
T ss_dssp EEEEEEEESSSHHHHHHHHH
T ss_pred EEEEeeeEcccHHHHHHHHH
Confidence 46799999999999887543
Done!