BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044226
(667 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|B Chain B, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|C Chain C, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|D Chain D, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
Length = 314
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 381 SIPMWTACVGYTVFSIISIIVIPLMFPKLKWYYVVVAYILAPSLSFCNAYGAGLTDMNMA 440
S+P+ G T+ +IS + FP+ + + A + GAG ++MA
Sbjct: 169 SVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMA 228
Query: 441 YNYGKVALFVLAALSGKENGVVAGLVGCGLIKS 473
Y + ++ A++GKE G+V C +KS
Sbjct: 229 YAGARFVFSLVDAMNGKE-----GVVECSFVKS 256
>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|B Chain B, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|C Chain C, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|D Chain D, Crystal Structure Of Human Malate Dehydrogenase Type 2
Length = 342
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 381 SIPMWTACVGYTVFSIISIIVIPLMFPKLKWYYVVVAYILAPSLSFCNAYGAGLTDMNMA 440
++P+ G T+ +IS + FP+ + + A + GAG ++MA
Sbjct: 197 NVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMA 256
Query: 441 YNYGKVALFVLAALSGKENGVVAGLVGCGLIKS 473
Y + ++ A++GKE G+V C +KS
Sbjct: 257 YAGARFVFSLVDAMNGKE-----GVVECSFVKS 284
>pdb|2JF6|A Chain A, Structure Of Inactive Mutant Of Strictosidine Glucosidase
In Complex With Strictosidine
pdb|2JF6|B Chain B, Structure Of Inactive Mutant Of Strictosidine Glucosidase
In Complex With Strictosidine
pdb|2JF7|A Chain A, Structure Of Strictosidine Glucosidase
pdb|2JF7|B Chain B, Structure Of Strictosidine Glucosidase
Length = 532
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 295 PLITGLKGDWFPKTLPESSMKSLNGYKVFISIALILGDGLYNFLRILYFTATNIHARAKK 354
PL TG +PK++ E L + S L G Y+F+ + Y+TAT + K
Sbjct: 304 PLTTGD----YPKSMRELVKGRLPKFSADDSEKL---KGCYDFIGMNYYTATYVTNAVKS 356
Query: 355 SNLKTDSDNQDQALDNRQRNE 375
++ K + DQ +RN+
Sbjct: 357 NSEKLSYETDDQVTKTFERNQ 377
>pdb|3B4W|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Aldehyde
Dehydrogenase Complexed With Nad+
Length = 495
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 472 KSIVSISSDLMHDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDG 531
+ ++I++D ++ T P+ + +SQ I T T+ + + AFD G+P G
Sbjct: 402 EDAIAIANDSVYGLAGSVWTTDVPKGIKISQQIRTG--------TYGINWYAFDPGSPFG 453
Query: 532 EYKAPYAIVYRNMAILGVEGFSALPQHCLQLCY 564
YK + + R GVE F+ L + Y
Sbjct: 454 GYK--NSGIGRENGPEGVEHFTQQKSVLLPMGY 484
>pdb|1OFT|A Chain A, Crystal Structure Of Sula From Pseudomonas Aeruginosa
pdb|1OFT|B Chain B, Crystal Structure Of Sula From Pseudomonas Aeruginosa
pdb|1OFT|C Chain C, Crystal Structure Of Sula From Pseudomonas Aeruginosa
pdb|1OFT|D Chain D, Crystal Structure Of Sula From Pseudomonas Aeruginosa
Length = 161
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 519 LFYKAFDVGNP----DGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAAN 574
LF +AF N D +P + A S LP HCL L A
Sbjct: 14 LFQEAFWASNGAPLLDDVIDSPSSASIEEPAAFSELSLSGLPGHCLTLL---------AP 64
Query: 575 LLRDLSPKKIAKWIPL 590
+LR+LS ++ A+W+ L
Sbjct: 65 ILRELSEEQDARWLTL 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,940,618
Number of Sequences: 62578
Number of extensions: 773401
Number of successful extensions: 1565
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1564
Number of HSP's gapped (non-prelim): 5
length of query: 667
length of database: 14,973,337
effective HSP length: 105
effective length of query: 562
effective length of database: 8,402,647
effective search space: 4722287614
effective search space used: 4722287614
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)