Query 044226
Match_columns 667
No_of_seqs 131 out of 1113
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 12:41:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 2E-123 4E-128 1006.9 33.5 597 31-659 45-732 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 5E-116 1E-120 996.3 46.5 584 40-657 18-680 (681)
3 PF03169 OPT: OPT oligopeptide 100.0 2.3E-99 5E-104 873.4 52.0 579 45-651 1-623 (624)
4 TIGR00728 OPT_sfam oligopeptid 100.0 8.3E-99 2E-103 870.6 41.5 572 40-650 11-650 (654)
5 TIGR00733 putative oligopeptid 100.0 7.7E-78 1.7E-82 679.3 50.2 552 45-652 1-590 (591)
6 COG1297 Predicted membrane pro 100.0 4.2E-64 9.2E-69 541.7 40.0 555 42-655 11-617 (624)
7 PF03169 OPT: OPT oligopeptide 95.4 1.7 3.7E-05 51.1 21.6 111 191-338 505-619 (624)
8 TIGR00733 putative oligopeptid 94.6 5.8 0.00013 46.3 22.7 152 487-648 83-265 (591)
9 TIGR00728 OPT_sfam oligopeptid 72.8 29 0.00063 41.1 11.7 29 264-292 584-616 (654)
10 PF03021 CM2: Influenza C viru 72.5 1.5 3.3E-05 38.0 0.7 35 8-42 98-132 (139)
11 PF11239 DUF3040: Protein of u 67.4 7.8 0.00017 32.9 3.9 22 5-26 3-27 (82)
12 PF15176 LRR19-TM: Leucine-ric 50.9 6.4 0.00014 34.6 0.6 31 637-667 19-49 (102)
13 TIGR02106 cyd_oper_ybgT cyd op 46.3 28 0.00061 23.8 3.0 18 50-67 5-22 (30)
14 PRK14749 hypothetical protein; 45.5 30 0.00066 23.5 3.0 18 50-67 5-22 (30)
15 PF08173 YbgT_YccB: Membrane b 44.9 31 0.00068 23.3 3.0 18 50-67 5-22 (28)
16 TIGR03142 cytochro_ccmI cytoch 44.1 48 0.001 30.0 5.3 12 7-18 42-53 (117)
17 PF11166 DUF2951: Protein of u 44.1 22 0.00048 30.9 2.8 25 44-68 67-92 (98)
18 PLN02380 1-acyl-sn-glycerol-3- 43.8 64 0.0014 35.6 7.1 64 4-68 259-323 (376)
19 PF06738 DUF1212: Protein of u 43.4 86 0.0019 30.7 7.4 37 4-40 61-98 (193)
20 PF11674 DUF3270: Protein of u 37.3 1.1E+02 0.0024 26.6 6.1 53 42-97 35-88 (90)
21 COG4890 Predicted outer membra 35.2 52 0.0011 23.1 2.9 18 50-67 5-22 (37)
22 PF13787 HXXEE: Protein of unk 34.6 1.8E+02 0.004 25.8 7.6 30 45-74 39-68 (116)
23 PF01988 VIT1: VIT family; In 33.5 1.1E+02 0.0025 30.6 6.6 47 44-90 131-177 (213)
24 PRK13592 ubiA prenyltransferas 30.7 1.1E+02 0.0023 32.7 6.0 62 4-68 43-111 (299)
25 TIGR02908 CoxD_Bacillus cytoch 30.7 1.2E+02 0.0025 27.5 5.3 47 45-92 22-68 (110)
26 PF12270 Cyt_c_ox_IV: Cytochro 29.6 4.8E+02 0.01 24.5 10.0 21 278-298 3-23 (137)
27 TIGR02838 spore_V_AC stage V s 28.8 74 0.0016 30.0 3.9 40 28-68 2-41 (141)
28 TIGR01129 secD protein-export 28.2 75 0.0016 35.3 4.6 64 3-71 207-270 (397)
29 PF09512 ThiW: Thiamine-precur 26.3 5.8E+02 0.013 24.4 9.6 27 496-522 90-117 (150)
30 cd02432 Nodulin-21_like_1 Nodu 26.1 2.7E+02 0.0059 28.2 7.9 42 51-93 143-184 (218)
31 PRK12392 bacteriochlorophyll c 25.7 1.4E+02 0.003 32.4 5.9 54 18-74 67-121 (331)
32 cd02437 CCC1_like_1 CCC1-relat 25.6 1.1E+02 0.0024 29.7 4.8 16 76-91 124-139 (175)
33 TIGR02872 spore_ytvI sporulati 25.3 5.8E+02 0.012 26.9 10.8 42 478-519 286-331 (341)
34 KOG1289 Amino acid transporter 24.8 95 0.0021 35.7 4.6 64 48-111 392-455 (550)
35 PRK07668 hypothetical protein; 24.1 1.7E+02 0.0038 30.4 6.0 12 2-13 19-30 (254)
36 KOG2881 Predicted membrane pro 22.7 31 0.00067 35.8 0.3 21 6-26 159-179 (294)
37 TIGR00814 stp serine transport 21.8 1E+03 0.023 26.2 12.1 87 408-497 30-123 (397)
38 KOG3088 Secretory carrier memb 21.7 2.9E+02 0.0063 29.2 7.0 117 6-123 65-220 (313)
39 cd02433 Nodulin-21_like_2 Nodu 20.9 4.1E+02 0.0088 27.3 8.0 15 76-90 182-196 (234)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=2e-123 Score=1006.91 Aligned_cols=597 Identities=16% Similarity=0.206 Sum_probs=518.7
Q ss_pred hhhcccCCCCC-----------CCCcchHHHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHHHHHHhhhh
Q 044226 31 DQTEDVKRIPP-----------WTNHITIRGLIASVAIGIIYSVIVMKLNLTTGLVPNLNVSAALLAFVFVRTWTKLLHK 99 (667)
Q Consensus 31 ~~~~~~~~~~~-----------~~p~~T~Ra~ilG~il~~l~a~~n~~~~lr~g~~~~~si~~~lls~~i~~~l~~~lP~ 99 (667)
+++||+||+|+ ++|++|||+|++|++.|++++++||+|++|+++...+.+++|++.+|+||+|+|.||+
T Consensus 45 ~ed~~~spv~EVrl~Vp~tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~~R~~~lsis~i~aQi~~~PlGklma~~lP~ 124 (761)
T KOG2262|consen 45 LEDEEDSPVPEVRLTVPPTDDPTLPVLTFRMWFLGLISCIVLAFVNQFFSYRYPPLSISAIVAQIATYPLGKLMAKTLPT 124 (761)
T ss_pred ccccccCcchhheeecCCCCCCCchhHhHHHHHHHHHHHHHHHHHhhhhcccCCCeehHHHHHHHHHHhHHHHHHHhCCc
Confidence 57788999886 5699999999999999999999999999999999999999999999999999999998
Q ss_pred cC----------CCCCCCCcchhHHHhhhhhhhcccccccccchhhhhhhhhhhhccCCCCCCCCCCCCCCChhHHHHHH
Q 044226 100 AG----------ITATPFTRQENTVIQTCAVACYSIAVGGGFGSYLLGLNRRTYQQSGVDTPGNNPDSTKEPEIGWMIGF 169 (667)
Q Consensus 100 ~~----------~npgpf~~kE~~liqt~asa~~~~a~a~~~~~~i~a~~~~~y~~~g~~~~~~~~~~~~~~~~g~~i~~ 169 (667)
|. +||||||.|||+++++++|+++|.+||.+++..+-++ |++ +.++++++++
T Consensus 125 ~~~~~~~~~~fslNPGPFn~KEHvlitIfan~~sg~aYat~Ii~~~k~f----Y~~--------------~l~f~~~~ll 186 (761)
T KOG2262|consen 125 WKFGLGGRWSFSLNPGPFNVKEHVLITIFANIGSGTAYATHIITAQKAF----YKR--------------NLSFGYAFLL 186 (761)
T ss_pred eeeecCcceEEEeCCCCCcchheeeeehhhhccCcchhhhHHHHHHHHH----Hhc--------------cccHHHHHHH
Confidence 63 5999999999999999999999999987765555554 532 4689999999
Q ss_pred HHHHHHhhhHhhhhhccceeccCCCCCchhHHHHHHHhhcCCCCCcccc-hhhHHHHHHHHHHHHHHHHHH-HHhcC---
Q 044226 170 LFVTSFVGLLALVPLRKIMIIDYKLSYPSGTATAVLINGFHTPKGDKRA-KKQVHGFTKFFSLSFLWAFFQ-WFYAG--- 244 (667)
Q Consensus 170 ~l~~~llG~~~Ag~lRr~lV~p~~l~wP~~la~a~l~~slh~~~~~~~a-~~~~~~f~~~~~~~f~~~~~~-wi~p~--- 244 (667)
++++|++|||+||++||++|+|.+|.||++|++++|+|+||++|+++++ .+|+|||.++|.++|+|+|++ +++|.
T Consensus 187 ~lttQ~lGyGwAGl~Rk~lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~ 266 (761)
T KOG2262|consen 187 VLTTQLLGYGWAGLFRKYLVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPILSS 266 (761)
T ss_pred HHHHHHhcccHhhhhHhhccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHHhh
Confidence 9999999999999999999999999999999999999999997655544 589999999999999999984 77775
Q ss_pred -Cccccccccc-----------ccccc--cccc-c-hhhccccccccHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCC
Q 044226 245 -GEHCGFVQFP-----------TFGLK--AWKN-S-MTYIGAGMICSHLVNLSLLLGAVLSWGIMWPLITGLKGDWFPKT 308 (667)
Q Consensus 245 -~~~~~~~~~~-----------~~G~~--~~~~-s-~~~ig~g~~~p~~~~~~~~~G~vl~~~ii~P~~~~~~~~w~~~~ 308 (667)
++.||..+.. ++|.. ++|| . .+|+|+|+.+|+++.+|.++|.++..+|+.|++|+. |.|+..+
T Consensus 267 ~swvcW~~P~s~~~~qi~sg~~GLGi~~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~~-n~~~a~~ 345 (761)
T KOG2262|consen 267 FSWVCWIWPSSITANQIGSGLTGLGIGPFTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYWT-NTYDAKY 345 (761)
T ss_pred hheeeEeccccHHHHHhcccccccccccccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhhc-cceecce
Confidence 5677774421 33444 4678 3 348999999999999999999999999999999997 6997665
Q ss_pred CCc--------------------ccc-cchhhhh----HHhHHHHHHHHHH--H----HHHHHHHHHHHHHHHHHHhccC
Q 044226 309 LPE--------------------SSM-KSLNGYK----VFISIALILGDGL--Y----NFLRILYFTATNIHARAKKSNL 357 (667)
Q Consensus 309 ~~~--------------------~~~-~~~~~y~----~~~~~~~~i~~g~--~----~l~~~~~~~~~~i~~~~~~~~~ 357 (667)
+|+ +++ .|..+|+ +|+++.+++++|+ + ++.|.+++++||+|+++|++.+
T Consensus 346 fPI~Ss~lf~~tG~sYnvt~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkdiw~~~~~~~~ 425 (761)
T KOG2262|consen 346 FPIFSSSLFDHTGNSYNVTKILDSKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKDIWQQTKKAFN 425 (761)
T ss_pred eceecCcceecCCcEeceeeeecCccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHHHHHHHHhccc
Confidence 542 111 3555676 5788888888873 3 3458889999999999987753
Q ss_pred CCCCCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHhhcccC--CchHHHHHHHHHHHHHHhhhhhhhhccc
Q 044226 358 KTDSDNQDQALDNRQRNEIFIKESIPMWTACVGYTVFSIISIIVIPLMFP--KLKWYYVVVAYILAPSLSFCNAYGAGLT 435 (667)
Q Consensus 358 ~~~~~~~~~~~d~~~r~~~~~y~~vP~ww~~~~~vv~~~l~~~~~~~~~~--~lp~w~~~lai~l~~v~~~~~~~i~g~T 435 (667)
...|.|.|+| +||||||+|||++.+++++++++++++.+.+ |+|||++++|.++++++.+|.++++|+|
T Consensus 426 --------k~~DiHtrlM-kkYKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~AtT 496 (761)
T KOG2262|consen 426 --------KKMDIHTRLM-KKYKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQATT 496 (761)
T ss_pred --------cCCCHHHHHH-HHhccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhhc
Confidence 1346677886 6799999999999999999999999999987 8999999999999999999999999999
Q ss_pred cCccchhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCChhHHHHHHHHHHHHHHhHHHH
Q 044226 436 DMNMAYNYGKVALFVLAALSGKENGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPL 515 (667)
Q Consensus 436 ~~~p~~~l~~i~~li~g~~~g~pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~k~pPr~~f~~QliGtivg~~v~~~ 515 (667)
|++| |+|+++|+|.||+. ||+|+|||.||.|||+++.||.++.+|+|+|||||+|||.||.+|++||+++++|+.+
T Consensus 497 Nq~~--GLNiitE~i~Gy~~--PgrPiAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~tivs~~Vn~g 572 (761)
T KOG2262|consen 497 NQTP--GLNIITEYIIGYIY--PGRPIANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTIVAGFVNLG 572 (761)
T ss_pred cCCc--cHHHHHHHHHHhhc--CCchHHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHHHhheeeeHH
Confidence 9999 79999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHhhccCCCCC--CCCcccchHHHHHHhhh-hhcccCCCCch--hhhhHHHHHHHHHHHHHHHHHh----cccc-h
Q 044226 516 TF-FLFYKAFDVGNP--DGEYKAPYAIVYRNMAI-LGVEGFSALPQ--HCLQLCYGFFAFAIAANLLRDL----SPKK-I 584 (667)
Q Consensus 516 v~-~~l~~~~~i~~~--~~~f~~P~a~~~~~~a~-~g~~G~~~l~~--~~~~~~~~~~~iG~~l~li~~~----~p~~-~ 584 (667)
|. |++.+..|+|++ .+.||||+.++++++|+ ||++||.+++. ..+....++|++|++.|++.+. +||+ |
T Consensus 573 v~~W~m~~I~~iC~~~~~s~~TCP~~rvffnASvIWGlIGP~riF~~~g~Y~~l~wFFLiGa~~pv~vw~~~k~fPk~~w 652 (761)
T KOG2262|consen 573 VAWWLMYSIPNICTTDQNSPWTCPSDRVFFNASVIWGLIGPKRIFGSLGIYPGLNWFFLIGALAPVLVWLLQKKFPKKKW 652 (761)
T ss_pred hHHHHHhcccccccCCCCCCccCCCCceEEeceeeeecccchhhcCCCCccCcchHHHHHHHHhhHHHHHHHHhcchhhh
Confidence 96 566667799984 56899999999999997 89999988776 3455566688888888887654 4553 4
Q ss_pred hhhcchHHHhhcccccch----hhHHHHHHHHHHHHHHHhcCcccccchhhhhhhhhHhhHHhHHHHHHH-HHhcCCCCC
Q 044226 585 AKWIPLPMAMAVPFLVGA----YFAIDMCLGSLVVFAWHKLNSKNADLMIPAVASGLICGDGLWILPSSI-LALANVRPP 659 (667)
Q Consensus 585 ~~~iP~~~~~~~g~~~p~----~~~~~~~vG~~~~~~~~r~~~~w~~ky~yilaAgL~aG~ai~glii~~-l~~~gv~~~ 659 (667)
.+.+..|+.++....+|| +|+.|+++|.+++|+++||++.||+||||++|||||||.+++++++++ ++..|++.+
T Consensus 653 ~~~i~~pvl~gg~~~mPpat~vny~sw~iv~fifny~i~r~~~~WW~kYNyvLsaaldaG~a~~~vliffcv~~~~~~~~ 732 (761)
T KOG2262|consen 653 IKQINPPVLFGGTANMPPATAVNYTSWAIVGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVAFMGVLIFFCVQYPGISLN 732 (761)
T ss_pred hhccCcceEecccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccchhHHHhHhhheeccCCCccc
Confidence 454333788887778886 789999999999999999999999999999999999999999999974 888887654
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=4.6e-116 Score=996.32 Aligned_cols=584 Identities=16% Similarity=0.206 Sum_probs=494.6
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHHHHHHhhhhcC---------CCCCCCCcc
Q 044226 40 PPWTNHITIRGLIASVAIGIIYSVIVMKLNLTTGLVPNLNVSAALLAFVFVRTWTKLLHKAG---------ITATPFTRQ 110 (667)
Q Consensus 40 ~~~~p~~T~Ra~ilG~il~~l~a~~n~~~~lr~g~~~~~si~~~lls~~i~~~l~~~lP~~~---------~npgpf~~k 110 (667)
+|++|++|+|+|++|++++++++++||+|++|+|+++.+++++||++|++||+|+|+||+++ +||||||+|
T Consensus 18 Dp~~p~~TfRa~~lG~~l~~i~s~in~~f~lR~p~i~is~~~~qll~yp~Gk~~a~~lP~~~~~~~g~~~~lNPGPF~~K 97 (681)
T TIGR00727 18 DPTIPVNTIRAWFIGLIWSTVGSGFNMFFSHRVPSISLNTPIIQMLAYPCGKAWAKIIPDWTITIRGRKYNIIPGPFNVK 97 (681)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHHHHHHcCccccccccceeccCCCCCChh
Confidence 35779999999999999999999999999999999999999999999999999999999864 689999999
Q ss_pred hhHHHhhhhhhhcccccccccchhhhhhhhhhhhccCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhHhhhhhccceec
Q 044226 111 ENTVIQTCAVACYSIAVGGGFGSYLLGLNRRTYQQSGVDTPGNNPDSTKEPEIGWMIGFLFVTSFVGLLALVPLRKIMII 190 (667)
Q Consensus 111 E~~liqt~asa~~~~a~a~~~~~~i~a~~~~~y~~~g~~~~~~~~~~~~~~~~g~~i~~~l~~~llG~~~Ag~lRr~lV~ 190 (667)
||+++|+|||++.+.+|+. ..++++ ++||+. +.++++++++++++|++|+++||++||++|+
T Consensus 98 Eh~liti~a~~~~~~~y~~---~~i~~~-~~fy~~--------------~~~~g~~il~~lstq~~G~g~Ag~lRr~lV~ 159 (681)
T TIGR00727 98 EHMFITLMYAVSFGAAYTT---DIILAQ-KLFYKS--------------AFGFGYQFLLSLSTQFIGFGFAGILRRFVVY 159 (681)
T ss_pred cceeeeeeeehhccHHHHH---HHHHHH-HHHhCC--------------CCCHHHHHHHHHHHHHHHHHHHHHhhceEec
Confidence 9999999999998887764 345554 456731 3589999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHhhcCCCCCccc--c-hhhHHHHHHHHHHHHHHHHHH-HHhcC----Cccccccccc--------
Q 044226 191 DYKLSYPSGTATAVLINGFHTPKGDKR--A-KKQVHGFTKFFSLSFLWAFFQ-WFYAG----GEHCGFVQFP-------- 254 (667)
Q Consensus 191 p~~l~wP~~la~a~l~~slh~~~~~~~--a-~~~~~~f~~~~~~~f~~~~~~-wi~p~----~~~~~~~~~~-------- 254 (667)
|++|+||+++++++|+|+||++++++. + ++|+|+|+++|+++|+|+|++ +++|. ++.|++++..
T Consensus 160 p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P~n~~~~~i~g 239 (681)
T TIGR00727 160 PARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNWMTWIKPNNINLNQIFG 239 (681)
T ss_pred cccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhccCcchhhhhhhc
Confidence 999999999999999999998654332 2 379999999999999999874 66663 3555553311
Q ss_pred ---ccccc---ccccc-hh-hccccccccHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCcc--------------
Q 044226 255 ---TFGLK---AWKNS-MT-YIGAGMICSHLVNLSLLLGAVLSWGIMWPLITGLKGDWFPKTLPES-------------- 312 (667)
Q Consensus 255 ---~~G~~---~~~~s-~~-~ig~g~~~p~~~~~~~~~G~vl~~~ii~P~~~~~~~~w~~~~~~~~-------------- 312 (667)
++|+. ++||+ .+ +.|+|+++|+++++|+++|.+++++++.|++||+ |.|+.+++|..
T Consensus 240 ~~~GlGl~p~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy~-N~w~~~~lPi~s~~~fd~~G~~Y~v 318 (681)
T TIGR00727 240 GSTGLGINPISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYYS-NTWYCQYLPISSNGLYDNFGHSYNV 318 (681)
T ss_pred cccCCCcCCcCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHc-ccccccccCCccchhhhcCCCcccc
Confidence 23333 46773 32 5788999999999999999999999999999997 69987666531
Q ss_pred ------cc-cchhhhh----HHhHHHHHHHHHH--H----HHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccc
Q 044226 313 ------SM-KSLNGYK----VFISIALILGDGL--Y----NFLRILYFTATNIHARAKKSNLKTDSDNQDQALDNRQRNE 375 (667)
Q Consensus 313 ------~~-~~~~~y~----~~~~~~~~i~~g~--~----~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~r~~ 375 (667)
+. .|+++|+ .|++++.++.+++ + .+++..++++||+++++|+. +..|.|.|+|
T Consensus 319 s~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~~i~~~~~~~----------~~~D~h~rlM 388 (681)
T TIGR00727 319 TEILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGKLLFNALKDD----------DYPDPHSNLM 388 (681)
T ss_pred ceeeCCCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcC----------CCCChhHHHh
Confidence 11 3555676 4788888888874 3 34588899999999998742 1235566775
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHHHhhhhhhhhccccCccchhhHHHHHHHHHHhc
Q 044226 376 IFIKESIPMWTACVGYTVFSIISIIVIPLMFPKLKWYYVVVAYILAPSLSFCNAYGAGLTDMNMAYNYGKVALFVLAALS 455 (667)
Q Consensus 376 ~~~y~~vP~ww~~~~~vv~~~l~~~~~~~~~~~lp~w~~~lai~l~~v~~~~~~~i~g~T~~~p~~~l~~i~~li~g~~~ 455 (667)
++|||||+|||++++++++++++++++.+.+++|||++++++++++++.+|.++++|+||+++ ++|+++|+|.|++.
T Consensus 389 -~~Y~evP~WWy~~~l~is~~~~~~~v~~~~t~lP~W~~~lal~l~~i~~iP~~~i~a~t~~~~--~ln~l~eli~Gy~~ 465 (681)
T TIGR00727 389 -KAYKEVPDWWYLAVFLGFFGMGIATVEHWPTETPVWGLFVCLIFNFVFLIPTTILQATTNISF--GLNVLTEFIVGYAL 465 (681)
T ss_pred -hcCCCCcHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhhhheEeecCCcc--chhHHHHHHhhhcc
Confidence 799999999999999999999999999999999999999999999999999999999999998 69999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCChhHHHHHHHHHHHHHHhHHHHHHH-HHhhccCCCCC--CCC
Q 044226 456 GKENGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFF-LFYKAFDVGNP--DGE 532 (667)
Q Consensus 456 g~pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~k~pPr~~f~~QliGtivg~~v~~~v~~-~l~~~~~i~~~--~~~ 532 (667)
||+|+|||+||++++++.+||.++++|||+|||||+|||+||++|++||++|++|+++|++ ++.+..|+|++ +++
T Consensus 466 --PG~p~a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl~~~~v~~~v~~~~l~~i~~~c~~~~~~~ 543 (681)
T TIGR00727 466 --PGRPLAMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATIWQIFVQIGVLNWAIGNIDNFCTADQNAK 543 (681)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999975 55667799984 579
Q ss_pred cccchHHHHHHhhh-hhcccCCCCch--hhhhHHHHHHHHHHHHHHHHH----hcccchhhhcchHHHhhc-ccccch--
Q 044226 533 YKAPYAIVYRNMAI-LGVEGFSALPQ--HCLQLCYGFFAFAIAANLLRD----LSPKKIAKWIPLPMAMAV-PFLVGA-- 602 (667)
Q Consensus 533 f~~P~a~~~~~~a~-~g~~G~~~l~~--~~~~~~~~~~~iG~~l~li~~----~~p~~~~~~iP~~~~~~~-g~~~p~-- 602 (667)
|+||++++++++|+ ||++||.+++. ..+....++|++|+++|++.+ ++||++.|+++.|+.++. |...|.
T Consensus 544 ftcp~~~~~f~asv~Wg~iGP~r~F~~g~~Y~~l~~~fliGa~~pi~~~~~~r~~P~~~~~~~n~pv~~~~~g~~~~a~~ 623 (681)
T TIGR00727 544 YTCPNAVVFFNASVIWGVIGPKRIFSHGYIYPGLKWFWLIGACIGIFFWLVWKKWPKFYPRYLDWPMLFVGTGYIPPATP 623 (681)
T ss_pred ccCCCccceeehehhhhhcchHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHhcchhhhhhCCccHHHhhccccCCcch
Confidence 99999999999997 89999866664 234455557788887777654 456666677665777766 544332
Q ss_pred -hhHHHHHHHHHHHHHHHhcCcccccchhhhhhhhhHhhHHhHHHHHHH-HHhcCCC
Q 044226 603 -YFAIDMCLGSLVVFAWHKLNSKNADLMIPAVASGLICGDGLWILPSSI-LALANVR 657 (667)
Q Consensus 603 -~~~~~~~vG~~~~~~~~r~~~~w~~ky~yilaAgL~aG~ai~glii~~-l~~~gv~ 657 (667)
++..+.++|.++++++||||++||+||||++|||||+|++++++++++ +++.|++
T Consensus 624 ~n~~s~~~vg~~f~~~irr~~~~ww~kYnYvlsAald~G~a~~~~iiff~v~~~~~~ 680 (681)
T TIGR00727 624 YNYMYYTSVGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGLVLSAIIIFFCLQLKDTA 680 (681)
T ss_pred hhHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHhHheeEEEeCCCC
Confidence 366788999999999999999999999999999999999999999964 7766653
No 3
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=2.3e-99 Score=873.38 Aligned_cols=579 Identities=27% Similarity=0.420 Sum_probs=494.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcchhHHHhhhhhhhcc
Q 044226 45 HITIRGLIASVAIGIIYSVIVMKLNLTTGLVPNLNVSAALLAFVFVRTWTKLLHKAGITATPFTRQENTVIQTCAVACYS 124 (667)
Q Consensus 45 ~~T~Ra~ilG~il~~l~a~~n~~~~lr~g~~~~~si~~~lls~~i~~~l~~~lP~~~~npgpf~~kE~~liqt~asa~~~ 124 (667)
|+|+|++++|++++++++++|+|+++|+|+++.+++++|+++|+++|.++|..++..+||||||+||||++||+||++++
T Consensus 1 ~lT~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~~~~~~ln~gp~~~kE~~~vq~~asa~~~ 80 (624)
T PF03169_consen 1 QLTFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLARIGWRFSLNPGPFTIKENNLVQTMASAAGG 80 (624)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhhccccccCCCCCCHHHHHHHHHHHHHhhh
Confidence 78999999999999999999999999999999999999999999999999977788899999999999999999999999
Q ss_pred cccccccchhhhhhhhhhhhccCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhHhhhhhccceeccCCCCCchhHHHHH
Q 044226 125 IAVGGGFGSYLLGLNRRTYQQSGVDTPGNNPDSTKEPEIGWMIGFLFVTSFVGLLALVPLRKIMIIDYKLSYPSGTATAV 204 (667)
Q Consensus 125 ~a~a~~~~~~i~a~~~~~y~~~g~~~~~~~~~~~~~~~~g~~i~~~l~~~llG~~~Ag~lRr~lV~p~~l~wP~~la~a~ 204 (667)
.+++++++..+|+++. | + ++.++++++++++++|++|+++|+++||++|+|++|+||+++|+++
T Consensus 81 ~~~a~~~i~~ipa~~~--~---~-----------~~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~ 144 (624)
T PF03169_consen 81 MAYAAGFIAAIPALLF--L---G-----------QPFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAE 144 (624)
T ss_pred hhhhhhHHHHHHHHHH--h---c-----------cchhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHH
Confidence 8888899999998653 2 3 2357889999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHH-HHhcC----Ccccccccc-c----cccc--cccccchhhccccc
Q 044226 205 LINGFHTPKGDKRAKKQVHGFTKFFSLSFLWAFFQ-WFYAG----GEHCGFVQF-P----TFGL--KAWKNSMTYIGAGM 272 (667)
Q Consensus 205 l~~slh~~~~~~~a~~~~~~f~~~~~~~f~~~~~~-wi~p~----~~~~~~~~~-~----~~G~--~~~~~s~~~ig~g~ 272 (667)
++++||++++.+.+++|+|+|.++|.++|+|+|+. +++|. +..|++.+. + .+|. -++||+++++|+|+
T Consensus 145 ~i~alh~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~dws~~~~g~g~ 224 (624)
T PF03169_consen 145 LINALHSGGGWREAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWSFSFDWSPILIGSGL 224 (624)
T ss_pred HHHHhccCccchhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccceeeEeecHHhcCCCe
Confidence 99999997755667899999999999999999964 66664 456765432 1 2222 34688999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCccc--c-------cchhhhhHHhHHHHHHHHHHHHH------
Q 044226 273 ICSHLVNLSLLLGAVLSWGIMWPLITGLKGDWFPKTLPESS--M-------KSLNGYKVFISIALILGDGLYNF------ 337 (667)
Q Consensus 273 ~~p~~~~~~~~~G~vl~~~ii~P~~~~~~~~w~~~~~~~~~--~-------~~~~~y~~~~~~~~~i~~g~~~l------ 337 (667)
++|+++++|+++|.+++|+++.|++++++|.|.+.++|..+ . +...+|..|.+.+.+...+...+
T Consensus 225 i~p~~~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~ 304 (624)
T PF03169_consen 225 IVPLWAQLSMFLGAVLAWGIIIPILYYSGNAWGGAYLPFNSNSLFDNNGSSDGTLNWTKYIGYGPMYGSGLFALSYGWSF 304 (624)
T ss_pred eccHHHHHHHHHHHHHHHHhcCCeeeeeccccCCccccccchhhhhhcCccccccCHHHHHHHHHHHHhHHHHHhhcccc
Confidence 99999999999999999999999998875678776665211 1 12234677888888877764433
Q ss_pred -------HHHHHHHHHHHHHHHHhccCCCCCCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHhhccc--CC
Q 044226 338 -------LRILYFTATNIHARAKKSNLKTDSDNQDQALDNRQRNEIFIKESIPMWTACVGYTVFSIISIIVIPLMF--PK 408 (667)
Q Consensus 338 -------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~r~~~~~y~~vP~ww~~~~~vv~~~l~~~~~~~~~--~~ 408 (667)
.+.+++++|++++++++.+++.++ ..+++||+|+.+|++|+|+|+|||+.++++++++++++++.++ ++
T Consensus 305 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~vP~ww~~~~~~~~~v~~~~~~~~~~~~~~ 382 (624)
T PF03169_consen 305 AALTASIVHAILWHWKAIWQAFKQSKSSQRS--SKSSEDDPHYRLMRTYKEVPMWWYLAGLVVSFVLAIIVVEAWFGQTQ 382 (624)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhcccccc--cccccCCchhhhhhhcCCcchHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 366678889988877654321111 1134566666667899999999999999999999999999998 78
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhccccCccchhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 044226 409 LKWYYVVVAYILAPSLSFCNAYGAGLTDMNMAYNYGKVALFVLAALSGKENGVVAGLVGCGLIKSIVSISSDLMHDFKTG 488 (667)
Q Consensus 409 lp~w~~~lai~l~~v~~~~~~~i~g~T~~~p~~~l~~i~~li~g~~~g~pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G 488 (667)
+|+|+.++++++++++++|.++++|+||+||.+++++++|+++|++. |+++++||+++++++++++||+|++||||+|
T Consensus 383 ~p~~~~ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~~~--pg~~~a~l~~~~~~~~~~~qa~~~~~DlK~G 460 (624)
T PF03169_consen 383 MPWWGLILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGLLL--PGNPIANLLFGGYGYAAASQAGDLMQDLKTG 460 (624)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred hhcCCChhHHHHHHHHHHHHHHhHHHHHHHHHhhccCCCCC---CCCcccchHHHHHHhhhhhcccC-CCCchhhhhHHH
Q 044226 489 HLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNP---DGEYKAPYAIVYRNMAILGVEGF-SALPQHCLQLCY 564 (667)
Q Consensus 489 ~y~k~pPr~~f~~QliGtivg~~v~~~v~~~l~~~~~i~~~---~~~f~~P~a~~~~~~a~~g~~G~-~~l~~~~~~~~~ 564 (667)
||+|+|||+||++|++|+++|+++++++++++.+.|...++ ++.+++|++..|.+++ ++..|+ .+.|++.+ .
T Consensus 461 ~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~~~~~~~~~~~~~~~~~~ap~a~~~aav~-~g~~~~~~~~~~~~~---~ 536 (624)
T PF03169_consen 461 HYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLLNQAYPCGPDQGDSFSCPAPQAFAWAAVA-WGLIGPQRGLPYSAL---P 536 (624)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCcCcchHHHHHHHHH-HHhcCCcccchHHHH---H
Confidence 99999999999999999999999999999998555544322 3455566666665553 778786 24465544 4
Q ss_pred HHHHHHHHHHHHHHhcccchhhhcchHHHhh----cccccchhhHHHHHHHHHHHHHHHhcCcccccchhhhhhhhhHhh
Q 044226 565 GFFAFAIAANLLRDLSPKKIAKWIPLPMAMA----VPFLVGAYFAIDMCLGSLVVFAWHKLNSKNADLMIPAVASGLICG 640 (667)
Q Consensus 565 ~~~~iG~~l~li~~~~p~~~~~~iP~~~~~~----~g~~~p~~~~~~~~vG~~~~~~~~r~~~~w~~ky~yilaAgL~aG 640 (667)
+++++|++++++.++.+ |++|.+++++ +|+++|++++.++++|+++++++|||+++||+||||++|||||||
T Consensus 537 ~~~~~G~~~~i~~~l~~----~~~P~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~y~~~laagl~aG 612 (624)
T PF03169_consen 537 WGFLIGAVLPILFWLLQ----RKFPSPLAFGGASSIGFYLPSNYTSAIFIGGLFQFYWRRRYPKWWEKYNYVLAAGLIAG 612 (624)
T ss_pred HHHHHHHHHHHHHHHHH----hhCChhheeeecccccccchhHHHHHHHHHHHHHHHhhhcchhHHHhHhhHHHHHHHHH
Confidence 47899999999887653 4478668888 999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHH
Q 044226 641 DGLWILPSSIL 651 (667)
Q Consensus 641 ~ai~glii~~l 651 (667)
|++++++++++
T Consensus 613 ~~l~~li~~~~ 623 (624)
T PF03169_consen 613 EALMGLIIAFL 623 (624)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 4
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=8.3e-99 Score=870.64 Aligned_cols=572 Identities=26% Similarity=0.392 Sum_probs=459.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHHHHHHhhhhc-----CCCCCCCCcchhHH
Q 044226 40 PPWTNHITIRGLIASVAIGIIYSVIVMKLNLTTGLVPNLNVSAALLAFVFVRTWTKLLHKA-----GITATPFTRQENTV 114 (667)
Q Consensus 40 ~~~~p~~T~Ra~ilG~il~~l~a~~n~~~~lr~g~~~~~si~~~lls~~i~~~l~~~lP~~-----~~npgpf~~kE~~l 114 (667)
+|++|++|+|+|++|++++++++++|+||++|+|+++.+++++|+++|+++|+|+|+||+| ++||||||+||||+
T Consensus 11 dp~~~~~T~Ra~~lG~i~~~v~~~~n~~~~lr~g~~~~~si~~~ll~~~~g~~~~~~lP~~~~~~~~lnpgpft~kE~~~ 90 (654)
T TIGR00728 11 DPSLPVITFRAWFLGILIGVVFAGVNQFFGLRTGSVSISSIVAALLAYPLGKLWALIIPDWEGWKFSLNPGPFNVKENNL 90 (654)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHhcCCccccceecCCCCCChhhhee
Confidence 3567899999999999999999999999999999999999999999999999999999986 68999999999999
Q ss_pred HhhhhhhhcccccccccchhhhhhhhhhhhccCCCCCCCCCCCCCCChhHHHHHHHHHHHH--hhhHhhhhhccceeccC
Q 044226 115 IQTCAVACYSIAVGGGFGSYLLGLNRRTYQQSGVDTPGNNPDSTKEPEIGWMIGFLFVTSF--VGLLALVPLRKIMIIDY 192 (667)
Q Consensus 115 iqt~asa~~~~a~a~~~~~~i~a~~~~~y~~~g~~~~~~~~~~~~~~~~g~~i~~~l~~~l--lG~~~Ag~lRr~lV~p~ 192 (667)
+||+||++++.+++ +..+|++. ++|+ .+.++++++++++++|+ +|+++|+++||++|+|+
T Consensus 91 iq~~asa~~~~~~~---~~~i~a~~-~~~~--------------~~~~~~~~~l~~~~~~~~~lG~~~a~~lRr~lV~~~ 152 (654)
T TIGR00728 91 IQTAASACGGLAYA---IFILPAQK-MFYT--------------SNFSWGYQILLVWSTQLGFLGFGFAGLLRRALVVPA 152 (654)
T ss_pred EEeeeeccccHHHH---HHHHHHHH-HHcC--------------CCCCHHHHHHHHHHHHHHHhHHhhHHHhhhheeCcc
Confidence 99999999887653 57888864 3352 12467788888888887 99999999999999999
Q ss_pred CCCCchhHHHHHHHhhcCCC----CCcccchhhHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccc---cc--cccc
Q 044226 193 KLSYPSGTATAVLINGFHTP----KGDKRAKKQVHGFTKFFSLSFLWAFFQWFYAGGEHCGFVQFPTFG---LK--AWKN 263 (667)
Q Consensus 193 ~l~wP~~la~a~l~~slh~~----~~~~~a~~~~~~f~~~~~~~f~~~~~~wi~p~~~~~~~~~~~~~G---~~--~~~~ 263 (667)
+|+||+++|+++++++||++ ++.+..|..+..+...|..++.|.|++|++|... .++.+| .. .|||
T Consensus 153 ~l~~P~~la~a~l~~al~~~~~~~~g~~~~r~l~~~~~~~f~~~~~~~~~~~~~p~~~-----~~~~fgglg~~~~~f~w 227 (654)
T TIGR00728 153 KLPWPSGLATAELFKALHGKFHTANGDTIAKNLLRVLLKYFSSSFLWSFVSWFFPGFT-----AFQTFGGLGSGSIGFGW 227 (654)
T ss_pred cccCCcccHHHHHHHHhhhccCccCCCccchhHHHhHHHHHHHHHHHHHHHHHhcCCc-----cccccccccccccceec
Confidence 99999999999999998653 2222222233445677888899999999998631 122332 22 3566
Q ss_pred --chhhccccccccHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCcccc-----------------------cchh
Q 044226 264 --SMTYIGAGMICSHLVNLSLLLGAVLSWGIMWPLITGLKGDWFPKTLPESSM-----------------------KSLN 318 (667)
Q Consensus 264 --s~~~ig~g~~~p~~~~~~~~~G~vl~~~ii~P~~~~~~~~w~~~~~~~~~~-----------------------~~~~ 318 (667)
+++++|+|+++|+++++|+++|++++|+++.|+++++ |.|..++.|..+. .+..
T Consensus 228 ~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~~-n~~~~~~~p~~s~~~~~~~~~~y~~~~~il~~~~~~l~~~ 306 (654)
T TIGR00728 228 QQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYYK-NTWPADADPIDSSSTIDSTGVRYNSVGLIVVDGLWTLVKP 306 (654)
T ss_pred HHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHhc-CccccccCCCcchhhhcCCCceeeeeeEEEeCCCceecHH
Confidence 6678999999999999999999999999999999887 5775443332110 0111
Q ss_pred hhh----HHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccc----ccccccCCChhHH
Q 044226 319 GYK----VFISIALILGDGLY----NFLRILYFTATNIHARAKKSNLKTDSDNQDQALDNRQR----NEIFIKESIPMWT 386 (667)
Q Consensus 319 ~y~----~~~~~~~~i~~g~~----~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~r----~~~~~y~~vP~ww 386 (667)
+|. .|.+.+. .+..+. .+.+..+++.|++++++|+..+..+++ ++.+.| .+|++|+|+|+||
T Consensus 307 ~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~vP~ww 380 (654)
T TIGR00728 307 LYPIYSPLVLSIDF-YALLFNAFSDTIYSFALAHGRDIISARRDHYKLGRDD-----HVRLLSRDEDLKVKNYKEVPAWW 380 (654)
T ss_pred HHHHhCcceeeHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccCCC-----ChHHHhhcccccccccCcCcHHH
Confidence 233 1233333 111111 234666788899888776543211000 000111 1246789999999
Q ss_pred HHHHHHHHHHHHHHHhhccc--CCchHHHHHHHHHHHHHHhhhhhhhhccccCccchhhHHHHHHHHHHhcCCCchhHHH
Q 044226 387 ACVGYTVFSIISIIVIPLMF--PKLKWYYVVVAYILAPSLSFCNAYGAGLTDMNMAYNYGKVALFVLAALSGKENGVVAG 464 (667)
Q Consensus 387 ~~~~~vv~~~l~~~~~~~~~--~~lp~w~~~lai~l~~v~~~~~~~i~g~T~~~p~~~l~~i~~li~g~~~g~pg~~~an 464 (667)
|+.++++++++++++++.++ +++|||++++++++++++++|.++++|+| ||.+++++++|+++|++. ||++++|
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~~~~g~t--np~~~l~~~~~li~g~~~--pg~~~a~ 456 (654)
T TIGR00728 381 YLSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFVLAIPIGILAGIT--NPVSGLNIITELIIGYIL--PGRPLAN 456 (654)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhhheEEee--cccchhhHHHHHhheeec--CCcccHH
Confidence 99999999999998888887 68999999999999999999999999999 677789999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCCChhHHHHHHHHHHHHHHhHHHHHHHHHhhccCCCCCCCCcccchHHHHHHh
Q 044226 465 LVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNM 544 (667)
Q Consensus 465 l~~~~~~~~~~~qa~~~~~DlK~G~y~k~pPr~~f~~QliGtivg~~v~~~v~~~l~~~~~i~~~~~~f~~P~a~~~~~~ 544 (667)
|+++++++++++||+|++||||+|||+|+|||+||++|++|+++|+++++++++++.++++.. +++|+||++++|+++
T Consensus 457 l~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~~vg~~v~~~v~~~~~~~~~~~--~~~~~~p~a~~~~~a 534 (654)
T TIGR00728 457 LAFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGTIVGSLVNAPVLEWLYHAIGNQ--NNNFTCPNALVFYNA 534 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCCccCCcccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999988763 468999999999999
Q ss_pred hh-hhcccCCCCchh--hhhHHHHHHHHHHHHHHHHHh----cccchhhhcchHHHhhcccccchhhHHHHH----HHHH
Q 044226 545 AI-LGVEGFSALPQH--CLQLCYGFFAFAIAANLLRDL----SPKKIAKWIPLPMAMAVPFLVGAYFAIDMC----LGSL 613 (667)
Q Consensus 545 a~-~g~~G~~~l~~~--~~~~~~~~~~iG~~l~li~~~----~p~~~~~~iP~~~~~~~g~~~p~~~~~~~~----vG~~ 613 (667)
|+ ||++||. ++.. .+....+++++| +++++.+. .|| ++|++|+++++++++++|+++++.++ +|++
T Consensus 535 a~~~g~~Gp~-~f~~~~~y~~~~~~~l~G-~~~i~~~~~~~~~p~-~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vG~~ 611 (654)
T TIGR00728 535 SLIWGVIGPK-IFSGKGLYCGLMWFFLVG-VGAVLVWLVRKLFPK-WIKYINPPVAVGGGGYIPPATAVNYSTWAAVGGF 611 (654)
T ss_pred eeeeccccch-hcCCCCccHHHHHHHHHH-HHHHHHHHHHHHccc-hhhhcCHHHhhhhhhccCCcchhhhhHHHHHHHH
Confidence 97 6888964 3321 123334466666 45554433 343 56777879999999999998887777 9999
Q ss_pred HHHHHHhcCcccc--cchhhhhhhhhHhhHHhHHHHHHH
Q 044226 614 VVFAWHKLNSKNA--DLMIPAVASGLICGDGLWILPSSI 650 (667)
Q Consensus 614 ~~~~~~r~~~~w~--~ky~yilaAgL~aG~ai~glii~~ 650 (667)
+++++|||+++|| +||||++||||||||+++++++++
T Consensus 612 ~~~~~~rr~~~~~~~~~y~~~laagL~~G~al~gviiff 650 (654)
T TIGR00728 612 FNYRWRKNKRADWKAEKYNYVLAAGLIAGEALAGVIIFF 650 (654)
T ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999888876 999999999999999999999964
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=7.7e-78 Score=679.33 Aligned_cols=552 Identities=20% Similarity=0.276 Sum_probs=435.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcchhHHHhhhhhhhcc
Q 044226 45 HITIRGLIASVAIGIIYSVIVMKLNLTTGLVPNLNVSAALLAFVFVRTWTKLLHKAGITATPFTRQENTVIQTCAVACYS 124 (667)
Q Consensus 45 ~~T~Ra~ilG~il~~l~a~~n~~~~lr~g~~~~~si~~~lls~~i~~~l~~~lP~~~~npgpf~~kE~~liqt~asa~~~ 124 (667)
|+|+|++++|++++++.+++|.|++||+|+++.+|+++++++|.+.|.+.| +|++|||++||+||++++
T Consensus 1 elT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~-----------~t~~EnnivQT~asA~~~ 69 (591)
T TIGR00733 1 EYTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRD-----------RSILENNMVQTAASAAGT 69 (591)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhcc-----------CChhHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999998764 699999999999999987
Q ss_pred cccccccchhhhhhhhhhhhccCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhHhhhhhccceeccCCCCCchhHHHHH
Q 044226 125 IAVGGGFGSYLLGLNRRTYQQSGVDTPGNNPDSTKEPEIGWMIGFLFVTSFVGLLALVPLRKIMIIDYKLSYPSGTATAV 204 (667)
Q Consensus 125 ~a~a~~~~~~i~a~~~~~y~~~g~~~~~~~~~~~~~~~~g~~i~~~l~~~llG~~~Ag~lRr~lV~p~~l~wP~~la~a~ 204 (667)
.+ ++++.+|+++.+ | +|++++++..++++++++++|+.|+.||||++|++++|+||+++|+++
T Consensus 70 ~a---g~~~~lPAl~~l-----g---------~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae 132 (591)
T TIGR00733 70 LS---SVIFVLPALLML-----G---------YWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAE 132 (591)
T ss_pred HH---HHHHHHHHHHhc-----C---------ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHH
Confidence 65 577999997533 4 123467878888899999999999999999999999999999999999
Q ss_pred HHhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHH--HhcCCccccccc-cccccccccccchhhccccccccHHHHHH
Q 044226 205 LINGFHTPKGDKRAKKQVHGFTKFFSLSFLWAFFQW--FYAGGEHCGFVQ-FPTFGLKAWKNSMTYIGAGMICSHLVNLS 281 (667)
Q Consensus 205 l~~slh~~~~~~~a~~~~~~f~~~~~~~f~~~~~~w--i~p~~~~~~~~~-~~~~G~~~~~~s~~~ig~g~~~p~~~~~~ 281 (667)
++++.. ++ + ++++.|.+...+..+++|.++.- ..|.+...+.+. ...++ -.+|||++++|.|+++|++++++
T Consensus 133 ~l~~g~--~g-~-~~~~~~~l~~g~~~s~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~SpalvG~G~ivG~~v~~s 207 (591)
T TIGR00733 133 VLKAGD--KA-R-NGTGAKPIAYGGILASIYAFLGSLRVWSGTLSAAKLVGRRALY-FGSDLSLALIGVGYLVGLNIGFA 207 (591)
T ss_pred HHHccc--cc-c-chhhHHHHHHHHHHHHHHHHHHHhccCCchHHHHHhcCCcceE-EEecccHHHHcCceeeChHHHHH
Confidence 999742 22 1 34567778778888888877731 122110000000 00011 12467999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcCCCCCCcccc-cchh-hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 044226 282 LLLGAVLSWGIMWPLITGLKGDWFPKTLPESSM-KSLN-GYKVFISIALILGDGLYNFLRILYFTATNIHARAKKSNLKT 359 (667)
Q Consensus 282 ~~~G~vl~~~ii~P~~~~~~~~w~~~~~~~~~~-~~~~-~y~~~~~~~~~i~~g~~~l~~~~~~~~~~i~~~~~~~~~~~ 359 (667)
+++|++++|+++.|++..+ .|.|.+.++++. ...+ .|.+|+++++|++++++++.+..+...+.+++.++..++++
T Consensus 208 ~~~G~vlaWgvl~P~l~~~--~~~~~~~~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~~~~~~~~~~~~~~~~~~~~~ 285 (591)
T TIGR00733 208 MFLGGAIAWGVAIPIYTAK--MGSPGDLSALDLAWTIWSTKVRYIGVGAIVVAALWTLLKLRGPIARGIKAGLEAARRRQ 285 (591)
T ss_pred HHHHHHHHHHHHHHHHHhc--CCCCCCccHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999864 677755544321 1233 25678999999999999999888777777877776643321
Q ss_pred CCCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHhhcccCCch--------H-HHHHHHHHHHHHHhhhhhh
Q 044226 360 DSDNQDQALDNRQRNEIFIKESIPMWTACVGYTVFSIISIIVIPLMFPKLK--------W-YYVVVAYILAPSLSFCNAY 430 (667)
Q Consensus 360 ~~~~~~~~~d~~~r~~~~~y~~vP~ww~~~~~vv~~~l~~~~~~~~~~~lp--------~-w~~~lai~l~~v~~~~~~~ 430 (667)
+ .++..|. .+|+|.||...+.++ +++. ..+..+ +.| + .+.+++++++++++..+++
T Consensus 286 --~-----~~~~~r~----~~dip~~~v~~~~~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~la~vl~f~~a~v~g~ 350 (591)
T TIGR00733 286 --A-----GEAVLRT----EEDLPINIVLTLVAL-FVIP--LADFLL-YAPILHNIGMAIAVMAVLMLIIGFFVAAIAGY 350 (591)
T ss_pred --c-----ccccccc----cccccHHHHHHHHHH-HHHH--HHHHhc-CCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1122233 458999875433322 2221 212222 222 2 4667888888888889999
Q ss_pred hhcc--ccCccchhhHHHHHHHHHHhc---C-------CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCChhHH
Q 044226 431 GAGL--TDMNMAYNYGKVALFVLAALS---G-------KENGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSM 498 (667)
Q Consensus 431 i~g~--T~~~p~~~l~~i~~li~g~~~---g-------~pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~k~pPr~~ 498 (667)
+.|+ ||.||+|++++++|++++.+. | +|+...+|++.+++.+.+++||+|++||||+||++|++||+|
T Consensus 351 ~~G~iGts~nPvsg~~~~t~l~~a~~~~~~g~~~~~~~~~~~v~~~L~~g~vv~~aa~~AgD~mqDlKtG~LlGatPr~Q 430 (591)
T TIGR00733 351 MAGLVGSSNSPISGIGIMSVLFTALILKGLGLSGTGSQIPELMAATIFTAAVVCTAAAISNDNLQDLKTGYLVGATPWRQ 430 (591)
T ss_pred HhhhcCCCCCcHHHHHHHHHHHHHHHHHhcCcccCccccchhHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCHHHH
Confidence 9999 888999999999999999986 1 157789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhccCCCC-----CCCCcccchHHHHHHhhhhhcccCCCCchhhhhHHHHHHHHHHHH
Q 044226 499 LVSQAIGTAIGCVVAPLTFFLFYKAFDVGN-----PDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAA 573 (667)
Q Consensus 499 f~~QliGtivg~~v~~~v~~~l~~~~~i~~-----~~~~f~~P~a~~~~~~a~~g~~G~~~l~~~~~~~~~~~~~iG~~l 573 (667)
|++|++|+++|+++++++++++.++|++++ ++++|++|||.+|+++++ |+.+ +.+++. ...+++++|+++
T Consensus 431 ~~aq~iG~~vg~~v~~~v~~ll~~ayg~~~~~~~~~~~~l~APqA~l~~ava~-gi~~-~~l~~~---~i~~ga~~g~~l 505 (591)
T TIGR00733 431 QVALIIGTFVGALVMAPVLNLLIKAYGIAGTPTAKGENALPAPQAFLMAAVTE-GVFT-GTLEWT---MVFIGAGIGIAL 505 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccccCCCHHHHHHHHHh-hhcC-CCccHH---HHHHHHHHHHHH
Confidence 999999999999999999999999998753 457899999999999873 3333 234433 234467888899
Q ss_pred HHHHHhcccchhhh-cchHHHhhcccccchhhHHHHHHHHHHHHHHHhcCccc------ccchhhhhhhhhHhhHHhHHH
Q 044226 574 NLLRDLSPKKIAKW-IPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWHKLNSKN------ADLMIPAVASGLICGDGLWIL 646 (667)
Q Consensus 574 ~li~~~~p~~~~~~-iP~~~~~~~g~~~p~~~~~~~~vG~~~~~~~~r~~~~w------~~ky~yilaAgL~aG~ai~gl 646 (667)
.++++..++|++|+ .| ++++++|+|+|+++++++++|++++|+|+||+++. .++|++++||||+|||+++|+
T Consensus 506 ~~~~~~~~~~~~~~~~p-~lavgig~yLP~~~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vASGLIaGE~l~Gv 584 (591)
T TIGR00733 506 IIIDEILAKRGSKFRTP-VMAVGVGIYLPLSLGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGAAGLIVGESLTGV 584 (591)
T ss_pred HHHHHHhhhcccccCCc-hhHHHHHhhcchhHHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEecHhhcchHHHHH
Confidence 99998887766666 56 89999999999999999999999999999876532 246899999999999999999
Q ss_pred HHHHHH
Q 044226 647 PSSILA 652 (667)
Q Consensus 647 ii~~l~ 652 (667)
+++++.
T Consensus 585 ~~A~~~ 590 (591)
T TIGR00733 585 VFAAII 590 (591)
T ss_pred HHHHHh
Confidence 998653
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=4.2e-64 Score=541.67 Aligned_cols=555 Identities=21% Similarity=0.292 Sum_probs=422.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcchhHHHhhhhhh
Q 044226 42 WTNHITIRGLIASVAIGIIYSVIVMKLNLTTGLVPNLNVSAALLAFVFVRTWTKLLHKAGITATPFTRQENTVIQTCAVA 121 (667)
Q Consensus 42 ~~p~~T~Ra~ilG~il~~l~a~~n~~~~lr~g~~~~~si~~~lls~~i~~~l~~~lP~~~~npgpf~~kE~~liqt~asa 121 (667)
.+||+|+|++++|+++++++.++|.|+|+|+|.+..+|++++++|+.++|.++ ++|+.|||++||+||+
T Consensus 11 ~l~elTlr~vIlGilitvi~~aaN~yLGL~vGlT~a~SIPAAVISmavlk~~~-----------~~silENNmVQT~ASA 79 (624)
T COG1297 11 FLPELTLRGVILGILITVIFLAANVYLGLKVGLTFASSIPAAVISMAVLKAFK-----------GSSILENNMVQTQASA 79 (624)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhhheecceehhhhHHHHHHHHHHHHhC-----------ccchhhhHHHHHHHhh
Confidence 67999999999999999999999999999999999999999999999999866 4799999999999999
Q ss_pred hcccccccccchhhhhhhhhhhhccCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhHhhhhhccceeccCCCCCchhHH
Q 044226 122 CYSIAVGGGFGSYLLGLNRRTYQQSGVDTPGNNPDSTKEPEIGWMIGFLFVTSFVGLLALVPLRKIMIIDYKLSYPSGTA 201 (667)
Q Consensus 122 ~~~~a~a~~~~~~i~a~~~~~y~~~g~~~~~~~~~~~~~~~~g~~i~~~l~~~llG~~~Ag~lRr~lV~p~~l~wP~~la 201 (667)
++..+ +++++.+|++..+ | +|++.+++.....+..++++|+.|+.||||.+|.+++++||++.|
T Consensus 80 agtls--a~vIFviPgl~m~-----g---------~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPeGvA 143 (624)
T COG1297 80 AGTLS--AGVIFVLPGLLML-----G---------YWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPEGVA 143 (624)
T ss_pred hcccc--ccEEEechhHHhh-----c---------cccCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCCchh
Confidence 98776 4688999997543 3 567788866666789999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHH------------HHhcCCccccccccccccccccccchhhcc
Q 044226 202 TAVLINGFHTPKGDKRAKKQVHGFTKFFSLSFLWAFFQ------------WFYAGGEHCGFVQFPTFGLKAWKNSMTYIG 269 (667)
Q Consensus 202 ~a~l~~slh~~~~~~~a~~~~~~f~~~~~~~f~~~~~~------------wi~p~~~~~~~~~~~~~G~~~~~~s~~~ig 269 (667)
+||++++..+++++. +..|-..+....+.++.+.. |+. .+ +..+.+ ..+.|++++|
T Consensus 144 aAEvL~~g~~~~gd~---~g~~~i~~g~~~~~~~~~l~~g~~~~~~~~~~~~~-~~-----~~~~~l---g~~~S~AliG 211 (624)
T COG1297 144 AAEVLKAGNQREGDA---SGIKLIALGGALAALYSLLASGLRVIASSLSAAFS-VG-----RAAFAL---GLGLSLALIG 211 (624)
T ss_pred HHHHHHhcCCCCCCc---ccchhhhhhhHHHHHHHHHhccceeehhhHHHHHH-hc-----chhhhh---cccccHHHhC
Confidence 999999986544332 22333334444455555441 111 00 001111 1245899999
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCcccc-cchhh-hhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 044226 270 AGMICSHLVNLSLLLGAVLSWGIMWPLITGLKGDWFPKTLPESSM-KSLNG-YKVFISIALILGDGLYNFLRILYFTATN 347 (667)
Q Consensus 270 ~g~~~p~~~~~~~~~G~vl~~~ii~P~~~~~~~~w~~~~~~~~~~-~~~~~-y~~~~~~~~~i~~g~~~l~~~~~~~~~~ 347 (667)
.|+++|+.+..-+++|.+++|.+..|++.+. .|.|.+.+..+. ...++ +.+|+++|.+...+++++.+......|.
T Consensus 212 ~GylvGl~~~iaml~G~~iaWgvavP~~~~~--~~~p~~~~~~~~a~~vW~s~VrfIGaG~i~i~~~wtl~~l~~pi~~g 289 (624)
T COG1297 212 AGYLVGLPAGIAMLIGIFIAWGVAVPLLTLI--VPGPSDQEAGVQAWKVWSSKVRFIGAGAIAIAAIWTLISLLGPILRG 289 (624)
T ss_pred ceEEecchHHHHHHHHHHHHHHHHHHHHHhc--ccCCCchhHHHHHHHHhhheeEEeehhHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999998653 565543221111 11221 3479999999999999999888888899
Q ss_pred HHHHHHhccCCCCCCCccccccccccccccccCCChhHHHHHHHHHHHHHHHHHhhcccC------Cch----HHHHHHH
Q 044226 348 IHARAKKSNLKTDSDNQDQALDNRQRNEIFIKESIPMWTACVGYTVFSIISIIVIPLMFP------KLK----WYYVVVA 417 (667)
Q Consensus 348 i~~~~~~~~~~~~~~~~~~~~d~~~r~~~~~y~~vP~ww~~~~~vv~~~l~~~~~~~~~~------~lp----~w~~~la 417 (667)
+++.++..+.++ +...+.|.+ .|+|..|-... +++..+.+......+. ... .-+++++
T Consensus 290 i~~~f~~~r~~~-------~~~~~~rte----~Dl~~~~~~~~-~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~ 357 (624)
T COG1297 290 IKATFESARGRR-------RAGAVSRTE----RDLPPKLVLLV-LLATVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIA 357 (624)
T ss_pred HHHHHHHhhccc-------ccccccchh----hcCChhhHHHH-HHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHH
Confidence 998887765321 111122443 48887765433 3334444443322221 122 3345566
Q ss_pred HHHHHHHhhhhhhhhcccc--CccchhhHHHHHHHHHHhc---C-----------CCchhHHHHHHHHHHHHHHHHHHHH
Q 044226 418 YILAPSLSFCNAYGAGLTD--MNMAYNYGKVALFVLAALS---G-----------KENGVVAGLVGCGLIKSIVSISSDL 481 (667)
Q Consensus 418 i~l~~v~~~~~~~i~g~T~--~~p~~~l~~i~~li~g~~~---g-----------~pg~~~anl~~~~~~~~~~~qa~~~ 481 (667)
+++++.+.-.+++++|..+ .+|.||++.+++++.+.++ | +|....++++.+++.+.++.++.|+
T Consensus 358 ~v~GflvaAv~gymagLVgSssspiSGi~i~~v~~~~l~~l~~G~~~~~~~~~~~~~~~~~~~~~t~~vv~a~A~is~Dn 437 (624)
T COG1297 358 VVIGFLVAAVCGYMAGLVGSSSSPISGIGILSVTLLSLLILILGQSGGLFIDPLMRKFLVAATLFTASVVAAVAAISNDN 437 (624)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcchHHHHHHHHHHHHHHHhccccccccCcccchhHHHHHHHHHHHHHHHHHhhccc
Confidence 6777888888999999754 4799999999888875443 3 1345578899999999999999999
Q ss_pred hhhhhhhhhcCCChhHHHHHHHHHHHHHHhHHHHHHHHHhhccCCCC----CCCCcccchHHHHHHhhhhhcccCCCCch
Q 044226 482 MHDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGN----PDGEYKAPYAIVYRNMAILGVEGFSALPQ 557 (667)
Q Consensus 482 ~~DlK~G~y~k~pPr~~f~~QliGtivg~~v~~~v~~~l~~~~~i~~----~~~~f~~P~a~~~~~~a~~g~~G~~~l~~ 557 (667)
+||||+||++|.+||+||.+|++|+.+++++..+|+.+++++|++.+ +..+.++||+..+.+.+ .|+.+ +.+.|
T Consensus 438 lQDLKTG~LvgATPwkQqvaliiG~~~~alvi~pvL~ll~~aYgf~ga~~r~~~~l~apqa~lma~ia-~Gvf~-~~lew 515 (624)
T COG1297 438 LQDLKTGYLVGATPWKQQVALIIGCFVGALVIAPVLELLNKAYGFAGAPPRQGMDLAAPQATLMATIA-KGVFT-GNLEW 515 (624)
T ss_pred hhhhhhCeeecCChHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCcCCCCCCCCCCCcchHHHHHHHHh-cccCC-CCcch
Confidence 99999999999999999999999999999999999999999999864 12348999999998875 34433 44444
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcccchhhh-cchHHHhhcccccchhhHHHHHHHHHHHHHHHhcCc-------ccccch
Q 044226 558 HCLQLCYGFFAFAIAANLLRDLSPKKIAKW-IPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWHKLNS-------KNADLM 629 (667)
Q Consensus 558 ~~~~~~~~~~~iG~~l~li~~~~p~~~~~~-iP~~~~~~~g~~~p~~~~~~~~vG~~~~~~~~r~~~-------~w~~ky 629 (667)
. + ...+.++|+.+..+.+..++|+.|+ .| ++++++|+|+|++.+.++++|++.+|.+.|+.+ +.-++.
T Consensus 516 ~-m--i~~g~~~gi~lI~id~~l~~~~~~~~lp-vlAvGvGIylP~s~~ipi~vG~~l~~~v~~~~~~~~~~~~e~~~r~ 591 (624)
T COG1297 516 S-M--ILAGAGIGIVLIGIDERLKGRGGKLRLP-VLAVGVGIYLPPSLTIPIFVGGVLRWAVDRKLKKGDERYKERAKRI 591 (624)
T ss_pred H-H--HHHHHhHhheeeeccHHHhcCCcccccc-ceeeeeeeecChhhchHHHHHHHHHHHHHHhcccccchhhhcccce
Confidence 4 2 1224556666666666666677777 56 899999999999999999999999999988733 234568
Q ss_pred hhhhhhhhHhhHHhHHHHHHHHHhcC
Q 044226 630 IPAVASGLICGDGLWILPSSILALAN 655 (667)
Q Consensus 630 ~yilaAgL~aG~ai~glii~~l~~~g 655 (667)
++++||||++||++++++++.+...+
T Consensus 592 gvl~aaGLIvGEsL~gvi~a~ii~~~ 617 (624)
T COG1297 592 GVLFAAGLIVGESLFGVITALIIVGS 617 (624)
T ss_pred eEEEeeccccchHHHHHHHHHHheec
Confidence 99999999999999999999776643
No 7
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=95.38 E-value=1.7 Score=51.14 Aligned_cols=111 Identities=17% Similarity=0.349 Sum_probs=66.9
Q ss_pred cCCCCCchhHHHHHHHhhcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccchhhcc-
Q 044226 191 DYKLSYPSGTATAVLINGFHTPKGDKRAKKQVHGFTKFFSLSFLWAFFQWFYAGGEHCGFVQFPTFGLKAWKNSMTYIG- 269 (667)
Q Consensus 191 p~~l~wP~~la~a~l~~slh~~~~~~~a~~~~~~f~~~~~~~f~~~~~~wi~p~~~~~~~~~~~~~G~~~~~~s~~~ig- 269 (667)
...++=|++...+++.+.+-+.++ ..++..+.+++...++-..+.|+... ..| ++..+|
T Consensus 505 ~~~~~ap~a~~~aav~~g~~~~~~----~~~~~~~~~~~~~G~~~~i~~~l~~~-------~~P---------~~~~~~~ 564 (624)
T PF03169_consen 505 SFSCPAPQAFAWAAVAWGLIGPQR----GLPYSALPWGFLIGAVLPILFWLLQR-------KFP---------SPLAFGG 564 (624)
T ss_pred cCcCcchHHHHHHHHHHHhcCCcc----cchHHHHHHHHHHHHHHHHHHHHHHh-------hCC---------hhheeee
Confidence 356677888888999988755322 23466666677776666555444311 112 112233
Q ss_pred ---ccccccHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCcccccchhhhhHHhHHHHHHHHHHHHHH
Q 044226 270 ---AGMICSHLVNLSLLLGAVLSWGIMWPLITGLKGDWFPKTLPESSMKSLNGYKVFISIALILGDGLYNFL 338 (667)
Q Consensus 270 ---~g~~~p~~~~~~~~~G~vl~~~ii~P~~~~~~~~w~~~~~~~~~~~~~~~y~~~~~~~~~i~~g~~~l~ 338 (667)
.|++.|...+..+++|.++.+++= .+. ..| .++|..-++.|+..+.++..++
T Consensus 565 ~~~~~~~~~~~~~~~~~iG~~~~~~~~----~~~-~~~------------~~~y~~~laagl~aG~~l~~li 619 (624)
T PF03169_consen 565 ASSIGFYLPSNYTSAIFIGGLFQFYWR----RRY-PKW------------WEKYNYVLAAGLIAGEALMGLI 619 (624)
T ss_pred cccccccchhHHHHHHHHHHHHHHHhh----hcc-hhH------------HHhHhhHHHHHHHHHHHHHHHH
Confidence 577889989999999998876541 111 111 1234444677777777776654
No 8
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=94.63 E-value=5.8 Score=46.30 Aligned_cols=152 Identities=15% Similarity=0.075 Sum_probs=86.5
Q ss_pred hhhhcCCChhHHHHHHHHHHHHHHhHHHHHHHHHhhccCCCCCCCCcccchHHHHHHhhhhhcccCCCCchhhhhHHHHH
Q 044226 487 TGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGF 566 (667)
Q Consensus 487 ~G~y~k~pPr~~f~~QliGtivg~~v~~~v~~~l~~~~~i~~~~~~f~~P~a~~~~~~a~~g~~G~~~l~~~~~~~~~~~ 566 (667)
+|+.-..|...+...=+.|.++|.+..+++.+.+...+ +++-|...+-+..-+.|-.|.++ +.....+.+
T Consensus 83 lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~-------~L~fP~G~A~Ae~l~~g~~g~~~---~~~~~l~~g 152 (591)
T TIGR00733 83 LGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVES-------KLPYPEGVACAEVLKAGDKARNG---TGAKPIAYG 152 (591)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-------CCCCCCHHHHHHHHHccccccch---hhHHHHHHH
Confidence 34333446677777778999999999999876665432 34444444333221223333111 112223334
Q ss_pred HHHHHHHHHHH--Hhccc---ch-------hhh--cchHHHhhcccccchhhHHHHHHHHHHHHHHH-----hc-C-cc-
Q 044226 567 FAFAIAANLLR--DLSPK---KI-------AKW--IPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWH-----KL-N-SK- 624 (667)
Q Consensus 567 ~~iG~~l~li~--~~~p~---~~-------~~~--iP~~~~~~~g~~~p~~~~~~~~vG~~~~~~~~-----r~-~-~~- 624 (667)
++++.+..++. +.+|. .+ ..+ -++|..+|.|+..+...+..+++|+++.|.+- ++ . +.
T Consensus 153 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~SpalvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~~~~~~~ 232 (591)
T TIGR00733 153 GILASIYAFLGSLRVWSGTLSAAKLVGRRALYFGSDLSLALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAKMGSPGD 232 (591)
T ss_pred HHHHHHHHHHHHhccCCchHHHHHhcCCcceEEEecccHHHHcCceeeChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 55555444332 11221 01 012 34578899999999999999999999987742 21 1 11
Q ss_pred ---------cccchhhhhhhhhHhhHHhHHHHH
Q 044226 625 ---------NADLMIPAVASGLICGDGLWILPS 648 (667)
Q Consensus 625 ---------w~~ky~yilaAgL~aG~ai~glii 648 (667)
-|.+|-.-.+.|.+.+.++..++.
T Consensus 233 ~~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~ 265 (591)
T TIGR00733 233 LSALDLAWTIWSTKVRYIGVGAIVVAALWTLLK 265 (591)
T ss_pred ccHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Confidence 033222226889999999988875
No 9
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=72.78 E-value=29 Score=41.12 Aligned_cols=29 Identities=10% Similarity=0.219 Sum_probs=21.0
Q ss_pred chhhccccccccHHHHHHHH----HHHHHHHHH
Q 044226 264 SMTYIGAGMICSHLVNLSLL----LGAVLSWGI 292 (667)
Q Consensus 264 s~~~ig~g~~~p~~~~~~~~----~G~vl~~~i 292 (667)
++..+|.++..|...+.+++ +|+++.++.
T Consensus 584 ~~~~~~~~~~lp~~~~~~~~~~~~vG~~~~~~~ 616 (654)
T TIGR00728 584 PPVAVGGGGYIPPATAVNYSTWAAVGGFFNYRW 616 (654)
T ss_pred HHHhhhhhhccCCcchhhhhHHHHHHHHHHHHH
Confidence 45567888888988899999 666555533
No 10
>PF03021 CM2: Influenza C virus M2 protein; InterPro: IPR004267 This family represents the matrix protein, M2, of Influenza C virus. The M1 protein is the product of a spliced mRNA (see IPR004271 from INTERPRO). Small quantities of the unspliced mRNA are found in the cell additionally encoding the M2 protein.
Probab=72.50 E-value=1.5 Score=38.03 Aligned_cols=35 Identities=29% Similarity=0.292 Sum_probs=30.0
Q ss_pred hhhhhhhhhccchhhhhhhhhhhhhhcccCCCCCC
Q 044226 8 EELKEIENVSHHEKEELDLEEIKDQTEDVKRIPPW 42 (667)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (667)
.|.|..|.-..-..|.+|+.||...|.|++|+|-+
T Consensus 98 peidsmekdialsrerldlgedapdetdnspipfs 132 (139)
T PF03021_consen 98 PEIDSMEKDIALSRERLDLGEDAPDETDNSPIPFS 132 (139)
T ss_pred cchhhhhhHhhhhHHhhcccCCCCCcccCCCCccC
Confidence 36777888777788899999999999999999965
No 11
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=67.38 E-value=7.8 Score=32.91 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=13.3
Q ss_pred CChhh---hhhhhhhccchhhhhhh
Q 044226 5 FGEEE---LKEIENVSHHEKEELDL 26 (667)
Q Consensus 5 ~~~~~---~~~~~~~~~~~~~~~~~ 26 (667)
++|+| |+|||..+..++-+..-
T Consensus 3 LSe~E~r~L~eiEr~L~~~DP~fa~ 27 (82)
T PF11239_consen 3 LSEHEQRRLEEIERQLRADDPRFAA 27 (82)
T ss_pred CCHHHHHHHHHHHHHHHhcCcHHHH
Confidence 34555 77777777665555443
No 12
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=50.90 E-value=6.4 Score=34.60 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=27.3
Q ss_pred hHhhHHhHHHHHHHHHhcCCCCCcccccccC
Q 044226 637 LICGDGLWILPSSILALANVRPPICMKFLAS 667 (667)
Q Consensus 637 L~aG~ai~glii~~l~~~gv~~~~~~~~~~~ 667 (667)
+.+|..+.++++++|...-++-|.|+|++.|
T Consensus 19 ~LVGVv~~al~~SlLIalaaKC~~~~k~~~S 49 (102)
T PF15176_consen 19 FLVGVVVTALVTSLLIALAAKCPVWYKYLAS 49 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 4578888899999999999999999999875
No 13
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=46.32 E-value=28 Score=23.83 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044226 50 GLIASVAIGIIYSVIVMK 67 (667)
Q Consensus 50 a~ilG~il~~l~a~~n~~ 67 (667)
+|++|+.+++..+.+|..
T Consensus 5 aWilG~~lA~~~~v~~a~ 22 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAM 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999998864
No 14
>PRK14749 hypothetical protein; Provisional
Probab=45.51 E-value=30 Score=23.51 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044226 50 GLIASVAIGIIYSVIVMK 67 (667)
Q Consensus 50 a~ilG~il~~l~a~~n~~ 67 (667)
+|++|+.+++..+.+|..
T Consensus 5 aWiLG~~lAc~f~ilna~ 22 (30)
T PRK14749 5 LWFVGILLMCSLSTLVLV 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999998864
No 15
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=44.90 E-value=31 Score=23.26 Aligned_cols=18 Identities=11% Similarity=0.255 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044226 50 GLIASVAIGIIYSVIVMK 67 (667)
Q Consensus 50 a~ilG~il~~l~a~~n~~ 67 (667)
+|++|+.+++..+.+|..
T Consensus 5 aWilG~~lA~~~~i~~a~ 22 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAM 22 (28)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999988864
No 16
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=44.15 E-value=48 Score=30.05 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=8.0
Q ss_pred hhhhhhhhhhcc
Q 044226 7 EEELKEIENVSH 18 (667)
Q Consensus 7 ~~~~~~~~~~~~ 18 (667)
.|+|+|+|.-.+
T Consensus 42 r~qL~ELe~d~~ 53 (117)
T TIGR03142 42 RDRLAELERDLA 53 (117)
T ss_pred HHHHHHHHHHHH
Confidence 567888876544
No 17
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=44.06 E-value=22 Score=30.86 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=18.6
Q ss_pred Ccch-HHHHHHHHHHHHHHHHHHHHh
Q 044226 44 NHIT-IRGLIASVAIGIIYSVIVMKL 68 (667)
Q Consensus 44 p~~T-~Ra~ilG~il~~l~a~~n~~~ 68 (667)
.-++ +|+|++|++-+++++.+-.++
T Consensus 67 Knir~~KmwilGlvgTi~gsliia~l 92 (98)
T PF11166_consen 67 KNIRDIKMWILGLVGTIFGSLIIALL 92 (98)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 899999999999887764443
No 18
>PLN02380 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=43.84 E-value=64 Score=35.58 Aligned_cols=64 Identities=14% Similarity=0.074 Sum_probs=47.6
Q ss_pred CCChhhhhhhhhhccchhhhhhhhhhhhhhcccCCCCCCCCc-chHHHHHHHHHHHHHHHHHHHHh
Q 044226 4 RFGEEELKEIENVSHHEKEELDLEEIKDQTEDVKRIPPWTNH-ITIRGLIASVAIGIIYSVIVMKL 68 (667)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~T~Ra~ilG~il~~l~a~~n~~~ 68 (667)
..|+|| ||+|+-+|.-=.|||...|+-++++.-|-+++.|. --.-+.+.-+.|+++...--.|+
T Consensus 259 ~iP~~~-~~~~~WL~~~w~eKD~lle~~~~~g~F~~~~~~~~~~~~~~l~~~~~w~~~~~~~~~~~ 323 (376)
T PLN02380 259 ELPETD-DGIAQWCKDVFVAKDALLDKHFAEDTFGDQEYQDIGRPKKSLIVVISWACLLILGAIKF 323 (376)
T ss_pred cCcCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 467776 78999999999999999999999988877776666 33445666667776655544433
No 19
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=43.36 E-value=86 Score=30.71 Aligned_cols=37 Identities=22% Similarity=0.414 Sum_probs=18.9
Q ss_pred CCChhhhhhhhhhccch-hhhhhhhhhhhhhcccCCCC
Q 044226 4 RFGEEELKEIENVSHHE-KEELDLEEIKDQTEDVKRIP 40 (667)
Q Consensus 4 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 40 (667)
....|-+.++++.++.- +.+.++||-+++=++-+..|
T Consensus 61 ~~nl~~l~~v~~l~~~~~~~~~~~~ea~~~L~~I~~~~ 98 (193)
T PF06738_consen 61 GVNLDKLAAVNRLSRRIVAGQLSLEEAIERLDEIDREP 98 (193)
T ss_pred CcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhCC
Confidence 34556667776666553 24445555444433333333
No 20
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=37.33 E-value=1.1e+02 Score=26.59 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=27.2
Q ss_pred CCCcchHHH-HHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHHHHHHhh
Q 044226 42 WTNHITIRG-LIASVAIGIIYSVIVMKLNLTTGLVPNLNVSAALLAFVFVRTWTKLL 97 (667)
Q Consensus 42 ~~p~~T~Ra-~ilG~il~~l~a~~n~~~~lr~g~~~~~si~~~lls~~i~~~l~~~l 97 (667)
...++.|=+ +..=+++.++.+++ ++.+|.+ +..+-..+.++|+++....++.+
T Consensus 35 kL~ELlFF~nIA~FcI~tvlfsFv--fLs~kl~-t~~Af~~Ai~~Sl~~~~~~~~~i 88 (90)
T PF11674_consen 35 KLKELLFFANIAFFCIFTVLFSFV--FLSLKLN-TFWAFPLAILISLAITQLVRKFI 88 (90)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhh-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 444554432 33344444555443 4444442 13444466677888777766543
No 21
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=35.17 E-value=52 Score=23.14 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044226 50 GLIASVAIGIIYSVIVMK 67 (667)
Q Consensus 50 a~ilG~il~~l~a~~n~~ 67 (667)
+|++|+++++-++.+|..
T Consensus 5 aWiLG~lLAcAFgiinAl 22 (37)
T COG4890 5 AWILGLLLACAFGIINAL 22 (37)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999988865
No 22
>PF13787 HXXEE: Protein of unknown function with HXXEE motif
Probab=34.65 E-value=1.8e+02 Score=25.81 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=19.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 044226 45 HITIRGLIASVAIGIIYSVIVMKLNLTTGL 74 (667)
Q Consensus 45 ~~T~Ra~ilG~il~~l~a~~n~~~~lr~g~ 74 (667)
..|-+...+.+....+......+++.+.+.
T Consensus 39 ~~~~~~f~~~v~~~~~~~~~~~~~~~~~~~ 68 (116)
T PF13787_consen 39 LNSTSAFAVNVAIEFILVLLAAFLAARFGN 68 (116)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 566666666666666666666666665543
No 23
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=33.50 E-value=1.1e+02 Score=30.62 Aligned_cols=47 Identities=9% Similarity=0.066 Sum_probs=21.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHH
Q 044226 44 NHITIRGLIASVAIGIIYSVIVMKLNLTTGLVPNLNVSAALLAFVFV 90 (667)
Q Consensus 44 p~~T~Ra~ilG~il~~l~a~~n~~~~lr~g~~~~~si~~~lls~~i~ 90 (667)
|...--+-.++.+++.+...+..++..+.......++...+++..+.
T Consensus 131 p~~~al~~~~sf~lg~liPllp~~~~~~~~~a~~~s~~~~~~~L~~~ 177 (213)
T PF01988_consen 131 PWKAALATFLSFILGGLIPLLPYFFLPSVSEAFIASIAVTILALFIL 177 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 43333444555555555555555554311233445555555544444
No 24
>PRK13592 ubiA prenyltransferase; Provisional
Probab=30.69 E-value=1.1e+02 Score=32.70 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=40.9
Q ss_pred CCChhhhhhh------hhhccchhhhhhhhhhhhhhcccCCCCCCCCcchHH-HHHHHHHHHHHHHHHHHHh
Q 044226 4 RFGEEELKEI------ENVSHHEKEELDLEEIKDQTEDVKRIPPWTNHITIR-GLIASVAIGIIYSVIVMKL 68 (667)
Q Consensus 4 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~T~R-a~ilG~il~~l~a~~n~~~ 68 (667)
|.+++++--+ -...|-.|+=+|.|+|++..-|| |.|... .+.| +...++++.++...+|..+
T Consensus 43 ~~~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~R-PLPsG~--VS~~~A~~~si~L~~~~l~L~~l~ 111 (299)
T PRK13592 43 RIGIQEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHR-ALPSGR--VKKKDLAIALSFIVAVSVLLNVLF 111 (299)
T ss_pred CCchHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCC-CCCcCC--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555432 23477889999999999987664 777752 3333 4566667766776777776
No 25
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=30.68 E-value=1.2e+02 Score=27.50 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=32.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHHH
Q 044226 45 HITIRGLIASVAIGIIYSVIVMKLNLTTGLVPNLNVSAALLAFVFVRT 92 (667)
Q Consensus 45 ~~T~Ra~ilG~il~~l~a~~n~~~~lr~g~~~~~si~~~lls~~i~~~ 92 (667)
..+.|..++|.+++++.+++-....+.. ..+.......++..++.+.
T Consensus 22 ~~~~k~yviGFiLSiiLT~I~F~~V~~~-~l~~~~~~~~I~~lAvvQi 68 (110)
T TIGR02908 22 AEEMKKQIVTFALMIFLTLIAFFAVMLD-EIDKWFVIPFILLLAAVQV 68 (110)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhc-cCChhHHHHHHHHHHHHHH
Confidence 3578899999999999998877776653 2344444555555555543
No 26
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=29.55 E-value=4.8e+02 Score=24.54 Aligned_cols=21 Identities=14% Similarity=0.195 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 044226 278 VNLSLLLGAVLSWGIMWPLIT 298 (667)
Q Consensus 278 ~~~~~~~G~vl~~~ii~P~~~ 298 (667)
+...+|.+..+...++.++|.
T Consensus 3 ~ea~lF~~l~~Ff~~~~~vY~ 23 (137)
T PF12270_consen 3 VEAKLFYGLAVFFLVVAVVYG 23 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 345566666555555555543
No 27
>TIGR02838 spore_V_AC stage V sporulation protein AC. This model describes stage V sporulation protein AC, a paralog of stage V sporulation protein AE. Both are proteins found to present in a species if and only if that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAC have a stage V sproulation defect.
Probab=28.81 E-value=74 Score=29.97 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=32.3
Q ss_pred hhhhhhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 044226 28 EIKDQTEDVKRIPPWTNHITIRGLIASVAIGIIYSVIVMKL 68 (667)
Q Consensus 28 ~~~~~~~~~~~~~~~~p~~T~Ra~ilG~il~~l~a~~n~~~ 68 (667)
|-|+..+..+|.|+-. -+-+||.++|-++|+++-.+..++
T Consensus 2 ~Y~~~v~~~~Pk~~~~-~n~l~AFlvGG~IC~iGQ~l~d~~ 41 (141)
T TIGR02838 2 EYQNLVKKYEPKPPYL-KNCVMAFLVGGLICLIGQLISDFY 41 (141)
T ss_pred hHHHHHHhcCCCCcHH-HHHHHHHHhCcHHHHHHHHHHHHH
Confidence 4466777788888764 577999999999999999887766
No 28
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=28.21 E-value=75 Score=35.32 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=45.2
Q ss_pred CCCChhhhhhhhhhccchhhhhhhhhhhhhhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcc
Q 044226 3 SRFGEEELKEIENVSHHEKEELDLEEIKDQTEDVKRIPPWTNHITIRGLIASVAIGIIYSVIVMKLNLT 71 (667)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~T~Ra~ilG~il~~l~a~~n~~~~lr 71 (667)
-++++||-+|+.+.+++..-..+.++. +++++ .|+.-...++..+...+.+.+.-.+-+++.+|
T Consensus 207 G~~t~eEA~~La~~L~~g~lp~~~~~~--~~~~v---gp~lg~~~i~~~~~a~~ig~ilV~l~~~~~yr 270 (397)
T TIGR01129 207 GNFTAEEANDLALVLRSGALPAPLQIL--EERTI---GPSLGADSIEAGIKAGLIGLVLVLVFMILYYR 270 (397)
T ss_pred cccchhHHHHHHHHHHhccccCCcccc--cccCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999876544444433 33333 44456678888888888888777777777777
No 29
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=26.34 E-value=5.8e+02 Score=24.39 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=21.8
Q ss_pred hHHHHHHHHHH-HHHHhHHHHHHHHHhh
Q 044226 496 RSMLVSQAIGT-AIGCVVAPLTFFLFYK 522 (667)
Q Consensus 496 r~~f~~QliGt-ivg~~v~~~v~~~l~~ 522 (667)
..-..+|++|| ++|+++++++..++..
T Consensus 90 ~~a~lGEviGTGiIGal~sypva~~~~g 117 (150)
T PF09512_consen 90 WAAALGEVIGTGIIGALLSYPVAKLFMG 117 (150)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHhC
Confidence 45678899997 7899999999877664
No 30
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=26.14 E-value=2.7e+02 Score=28.20 Aligned_cols=42 Identities=17% Similarity=0.239 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHHHH
Q 044226 51 LIASVAIGIIYSVIVMKLNLTTGLVPNLNVSAALLAFVFVRTW 93 (667)
Q Consensus 51 ~ilG~il~~l~a~~n~~~~lr~g~~~~~si~~~lls~~i~~~l 93 (667)
..++.+++.+.-.+-.+|... ......++....++..+.-..
T Consensus 143 s~~sf~lg~liPllpy~~~~~-~~~~~~s~~~~~~aL~~~G~~ 184 (218)
T cd02432 143 SAISFSVGALLPLLAILLAPA-AWKVPVTIIATLLALALTGYV 184 (218)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333222 222344555555555444333
No 31
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=25.73 E-value=1.4e+02 Score=32.40 Aligned_cols=54 Identities=19% Similarity=0.200 Sum_probs=34.3
Q ss_pred cchhhhhhhhhhhhhhcccCCCCCCCCcchHHH-HHHHHHHHHHHHHHHHHhhcccCc
Q 044226 18 HHEKEELDLEEIKDQTEDVKRIPPWTNHITIRG-LIASVAIGIIYSVIVMKLNLTTGL 74 (667)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~T~Ra-~ilG~il~~l~a~~n~~~~lr~g~ 74 (667)
+--|+=-|.|+|+..+.+ .|.|.. .+|.|. ..+++++..+...+..+++++.+.
T Consensus 67 ~~iND~~D~~~D~~n~rt-Rpl~~G--~is~~~al~~~~~l~~la~~lg~~L~~~~~~ 121 (331)
T PRK12392 67 QSVNDYFDLELDRVNEPT-RPIPSG--RLSEKEALWNSIIVLLLAIGLGVWLGLHIGG 121 (331)
T ss_pred hHHhcceeecccccCCCC-CCCCcC--CcCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 445666777777765443 555554 356554 555666666666678888887654
No 32
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=25.56 E-value=1.1e+02 Score=29.70 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=8.2
Q ss_pred chhHHHHHHHHHHHHH
Q 044226 76 PNLNVSAALLAFVFVR 91 (667)
Q Consensus 76 ~~~si~~~lls~~i~~ 91 (667)
...++..++++..+.-
T Consensus 124 ~~~si~~~~~~L~~~G 139 (175)
T cd02437 124 AGIAVAIVLAILFILG 139 (175)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555443
No 33
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=25.34 E-value=5.8e+02 Score=26.93 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=31.7
Q ss_pred HHHHhhhhhhhhhcCCChhHHHHHHHHHHHH----HHhHHHHHHHH
Q 044226 478 SSDLMHDFKTGHLTLTSPRSMLVSQAIGTAI----GCVVAPLTFFL 519 (667)
Q Consensus 478 a~~~~~DlK~G~y~k~pPr~~f~~QliGtiv----g~~v~~~v~~~ 519 (667)
-.+..+-.=+|.-++++|=.++.+.+.|..+ |.++.+++.-.
T Consensus 286 ~~~~l~P~i~g~~~~l~p~~vl~~~l~g~~~~G~~G~~l~~~~~~~ 331 (341)
T TIGR02872 286 LRQILEPKVVSSSIGLHPLATLISMYIGLKLFGFLGLIFGPVIVVL 331 (341)
T ss_pred HHHhHhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777889999999999999999988655 45555555433
No 34
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=24.83 E-value=95 Score=35.72 Aligned_cols=64 Identities=11% Similarity=0.225 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcch
Q 044226 48 IRGLIASVAIGIIYSVIVMKLNLTTGLVPNLNVSAALLAFVFVRTWTKLLHKAGITATPFTRQE 111 (667)
Q Consensus 48 ~Ra~ilG~il~~l~a~~n~~~~lr~g~~~~~si~~~lls~~i~~~l~~~lP~~~~npgpf~~kE 111 (667)
.+|+++-.+.+++...+..--.--.....+..+.+..+||.+=-.++-..-|+.|+||||++.-
T Consensus 392 ~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r~~f~~gp~~lGk 455 (550)
T KOG1289|consen 392 LNAVLLSCIISILLGLLILASATAFNALFSAAAIALFIAYAIPIFCRLFFGRDDFRPGPFNLGK 455 (550)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHhheeecccccCCCCccccc
Confidence 4577777777776655433221111222344455666666554444434445678999998754
No 35
>PRK07668 hypothetical protein; Validated
Probab=24.11 E-value=1.7e+02 Score=30.39 Aligned_cols=12 Identities=17% Similarity=0.393 Sum_probs=8.2
Q ss_pred CCCCChhhhhhh
Q 044226 2 ESRFGEEELKEI 13 (667)
Q Consensus 2 ~~~~~~~~~~~~ 13 (667)
+++.+|||.+|+
T Consensus 19 ~~glseeeieei 30 (254)
T PRK07668 19 AKGIKEEDIESF 30 (254)
T ss_pred HCCCCHHHHHHH
Confidence 356788877665
No 36
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=22.71 E-value=31 Score=35.78 Aligned_cols=21 Identities=43% Similarity=0.650 Sum_probs=14.9
Q ss_pred Chhhhhhhhhhccchhhhhhh
Q 044226 6 GEEELKEIENVSHHEKEELDL 26 (667)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (667)
++||++|+|+-+..+..|+|.
T Consensus 159 ~~eE~eEVe~el~~~~~~~~~ 179 (294)
T KOG2881|consen 159 GQEELEEVEAELAKREDELDR 179 (294)
T ss_pred chhhHHHHHHHHHhccchhhh
Confidence 479999999876665555554
No 37
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=21.83 E-value=1e+03 Score=26.24 Aligned_cols=87 Identities=13% Similarity=-0.003 Sum_probs=42.0
Q ss_pred CchHHHHHHHHHHHHHHhhhhhhhhccccC---ccchhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHH---HHH
Q 044226 408 KLKWYYVVVAYILAPSLSFCNAYGAGLTDM---NMAYNYGKVALFVLAALSGKENGVVAGLVGCGLIKSIVSIS---SDL 481 (667)
Q Consensus 408 ~lp~w~~~lai~l~~v~~~~~~~i~g~T~~---~p~~~l~~i~~li~g~~~g~pg~~~anl~~~~~~~~~~~qa---~~~ 481 (667)
+.-||..+++.+++.+++....+...+... .|..++.-++|-.+|-.. |..+.-+++-.+-......+ .+.
T Consensus 30 ~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~---G~ii~~lY~~~~~~i~~aY~~~~~~~ 106 (397)
T TIGR00814 30 LGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNW---GILITLLYFFAIYPILLIYSVAITND 106 (397)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777777777777766665553333311 233345555666666442 44444334433333322223 333
Q ss_pred hhhhhhh-hhcCCChhH
Q 044226 482 MHDFKTG-HLTLTSPRS 497 (667)
Q Consensus 482 ~~DlK~G-~y~k~pPr~ 497 (667)
.+|+=.- .....|||.
T Consensus 107 ~~~fl~~~~~~~~p~~~ 123 (397)
T TIGR00814 107 SASFLVNQLGTAPPLRG 123 (397)
T ss_pred HHHHHHHhcCCCCcHHH
Confidence 3333222 235677774
No 38
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.74 E-value=2.9e+02 Score=29.18 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=62.1
Q ss_pred Chhhhhhhhhhccchhhhhhhhhhhhhh------cccCC-CCC--------------CCCcc----hHH--HHHHHHHHH
Q 044226 6 GEEELKEIENVSHHEKEELDLEEIKDQT------EDVKR-IPP--------------WTNHI----TIR--GLIASVAIG 58 (667)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~--------------~~p~~----T~R--a~ilG~il~ 58 (667)
-++||.+=|+-++...+|+|..|++.+. ++|=| .|. |.|+. .=| ..-++..++
T Consensus 65 kq~eL~~rqeEL~Rke~ELdRREr~~a~~g~~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~yylwm~~~~t 144 (313)
T KOG3088|consen 65 KQAELLKKQEELRRKEQELDRRERALARAGIVIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAYYLWMGLVLT 144 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhccCcccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777788888888888877664 34434 222 22322 112 233455555
Q ss_pred HHHHHHHHHhhcccCccchhHHHHHHHHHHHH---------HHHHHhhhh-cCCCCC--CCCcchhHHHhhhhhhhc
Q 044226 59 IIYSVIVMKLNLTTGLVPNLNVSAALLAFVFV---------RTWTKLLHK-AGITAT--PFTRQENTVIQTCAVACY 123 (667)
Q Consensus 59 ~l~a~~n~~~~lr~g~~~~~si~~~lls~~i~---------~~l~~~lP~-~~~npg--pf~~kE~~liqt~asa~~ 123 (667)
.+...+.....+ ...........+++=+.++ |-+-|..++ -+||=+ -|+.--|..+.++..++.
T Consensus 145 L~~Niia~la~~-i~g~~~~~f~Laii~fllftPcsyVcWyRPlYkAFRsDSSf~F~~FFF~y~~q~~~~v~qAvgf 220 (313)
T KOG3088|consen 145 LLWNIIACLAWW-IKGGGGTIFGLAIIWFLLFTPCSYVCWYRPLYKAFRTDSSFNFGAFFFTYFFQIVFCVFQAVGF 220 (313)
T ss_pred HHHHHHHHHHHH-HcCCCchhhHHHHHHHHHhCCceeeEeehHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHcc
Confidence 554444443333 3333444555566555444 333333333 233322 256677888877777774
No 39
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=20.91 E-value=4.1e+02 Score=27.27 Aligned_cols=15 Identities=27% Similarity=0.093 Sum_probs=6.7
Q ss_pred chhHHHHHHHHHHHH
Q 044226 76 PNLNVSAALLAFVFV 90 (667)
Q Consensus 76 ~~~si~~~lls~~i~ 90 (667)
...++...+++..+.
T Consensus 182 ~~~s~~~~~~~L~~l 196 (234)
T cd02433 182 LVLSVLLVGLALLAT 196 (234)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334454444444433
Done!