Query 044226
Match_columns 667
No_of_seqs 131 out of 1113
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 22:13:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wmi_B RELB, hypothetical prot 23.8 33 0.0011 26.1 1.6 19 5-23 36-54 (67)
2 1zbd_B Rabphilin-3A; G protein 17.9 41 0.0014 30.1 1.3 27 3-29 8-34 (134)
3 2zet_C Melanophilin; complex, 15.0 57 0.002 29.9 1.5 27 3-29 15-41 (153)
4 3nzj_F Proteasome component C1 13.5 45 0.0015 33.8 0.3 27 4-30 230-256 (288)
5 2wh0_Q Pkcev3, protein kinase 11.2 80 0.0027 20.0 0.9 10 7-16 12-21 (31)
6 2knc_B Integrin beta-3; transm 10.0 2E+02 0.007 23.1 3.2 31 35-70 2-32 (79)
7 3r8n_M 30S ribosomal protein S 9.7 1.2E+02 0.0039 26.4 1.7 25 3-27 45-69 (114)
8 2m0n_A Putative uncharacterize 9.0 1.2E+02 0.0042 26.2 1.5 22 1-22 37-58 (112)
9 3h3g_B Parathyroid hormone-rel 8.8 2.7E+02 0.0091 17.3 2.5 18 481-507 3-20 (24)
10 2k9j_B Integrin beta-3; transm 8.8 4.1E+02 0.014 18.7 4.0 22 47-68 8-29 (43)
No 1
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=23.75 E-value=33 Score=26.10 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.1
Q ss_pred CChhhhhhhhhhccchhhh
Q 044226 5 FGEEELKEIENVSHHEKEE 23 (667)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~ 23 (667)
.++|||+|+|.--...|+|
T Consensus 36 v~eeEl~ei~~eARd~~~e 54 (67)
T 1wmi_B 36 ITEEEIAELLELARDEDPE 54 (67)
T ss_dssp CCHHHHHHHHHHHTCCCGG
T ss_pred CCHHHHHHHHHHHhccchh
Confidence 8899999999887777765
No 2
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=17.88 E-value=41 Score=30.13 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=22.8
Q ss_pred CCCChhhhhhhhhhccchhhhhhhhhh
Q 044226 3 SRFGEEELKEIENVSHHEKEELDLEEI 29 (667)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (667)
|.|.+||.+-|++|+.-..++...|++
T Consensus 8 s~LteeE~~~Il~Vl~Rd~~l~~~E~~ 34 (134)
T 1zbd_B 8 EELTDEEKEIINRVIARAEKMETMEQE 34 (134)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhHHHHHHhHHH
Confidence 678999999999999988777766665
No 3
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=15.04 E-value=57 Score=29.87 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=20.5
Q ss_pred CCCChhhhhhhhhhccchhhhhhhhhh
Q 044226 3 SRFGEEELKEIENVSHHEKEELDLEEI 29 (667)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (667)
|.|.+||.+-|++|+.-..++...|++
T Consensus 15 s~LteeEr~~Il~VL~Rd~~l~~~Eee 41 (153)
T 2zet_C 15 STLTDEEAEHVWAVVQRDFDLRRREEE 41 (153)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhHHHHHHhHHH
Confidence 678999999999999776555544443
No 4
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=13.46 E-value=45 Score=33.83 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=15.6
Q ss_pred CCChhhhhhhhhhccchhhhhhhhhhh
Q 044226 4 RFGEEELKEIENVSHHEKEELDLEEIK 30 (667)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (667)
+.|+|+++|.|+.-..+-||.|.++|.
T Consensus 230 ~vp~~~~~~~~~~~~~~~~~~~~~~~~ 256 (288)
T 3nzj_F 230 FVKGDLLQEAIDFAQKEINGDDDEDED 256 (288)
T ss_dssp ECCHHHHHHHHHHHHHHTC--------
T ss_pred ECCHHHHHHHHHHHHHHhhcccccccc
Confidence 578999999998877766665544333
No 5
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=11.25 E-value=80 Score=20.02 Aligned_cols=10 Identities=50% Similarity=0.853 Sum_probs=7.8
Q ss_pred hhhhhhhhhh
Q 044226 7 EEELKEIENV 16 (667)
Q Consensus 7 ~~~~~~~~~~ 16 (667)
..|+||+||-
T Consensus 12 dqeikelenn 21 (31)
T 2wh0_Q 12 DQEIKELENN 21 (31)
T ss_pred HHHHHHHHHH
Confidence 4689999874
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=9.98 E-value=2e+02 Score=23.08 Aligned_cols=31 Identities=19% Similarity=0.099 Sum_probs=18.1
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhc
Q 044226 35 DVKRIPPWTNHITIRGLIASVAIGIIYSVIVMKLNL 70 (667)
Q Consensus 35 ~~~~~~~~~p~~T~Ra~ilG~il~~l~a~~n~~~~l 70 (667)
++||.|+ ...++++|++.++++.++-.++-.
T Consensus 2 ~~Cp~~~-----n~~~Iv~gvi~gilliGllllliw 32 (79)
T 2knc_B 2 AMGSKGP-----DILVVLLSVMGAILLIGLAALLIW 32 (79)
T ss_dssp CSSCSSS-----CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCC-----CchhhHHHHHHHHHHHHHHHHHHH
Confidence 4576555 345667777777766554444433
No 7
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=9.71 E-value=1.2e+02 Score=26.42 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=19.6
Q ss_pred CCCChhhhhhhhhhccchhhhhhhh
Q 044226 3 SRFGEEELKEIENVSHHEKEELDLE 27 (667)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (667)
..|.+||++.+++.++.-++|-|+.
T Consensus 45 ~~Lt~~ei~~l~~~i~~~~ie~dLr 69 (114)
T 3r8n_M 45 SELSEGQIDTLRDEVAKFVVEGDLR 69 (114)
T ss_dssp TTCCHHHHHHHHHHHSSSCTTHHHH
T ss_pred ccCCHHHHHHHHHHHHHhcchHHHH
Confidence 3578999999999987777776653
No 8
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=9.02 E-value=1.2e+02 Score=26.17 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=16.6
Q ss_pred CCCCCChhhhhhhhhhccchhh
Q 044226 1 MESRFGEEELKEIENVSHHEKE 22 (667)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (667)
+..+|.+||++||-..+..+..
T Consensus 37 L~R~LtdeEV~~Va~~L~~~~~ 58 (112)
T 2m0n_A 37 LRRTLTEEQVQEVVAKLTDPES 58 (112)
T ss_dssp CCSSCCHHHHHHHHHHHTCTTT
T ss_pred hhccCCHHHHHHHHHHHHhccC
Confidence 3578999999999877755433
No 9
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=8.83 E-value=2.7e+02 Score=17.29 Aligned_cols=18 Identities=17% Similarity=0.451 Sum_probs=13.8
Q ss_pred HhhhhhhhhhcCCChhHHHHHHHHHHH
Q 044226 481 LMHDFKTGHLTLTSPRSMLVSQAIGTA 507 (667)
Q Consensus 481 ~~~DlK~G~y~k~pPr~~f~~QliGti 507 (667)
-+||+| |.+|.-++++.+
T Consensus 3 s~Q~~r---------Rr~wL~~ll~~v 20 (24)
T 3h3g_B 3 SIQDLR---------RRFFLHHLIAEI 20 (26)
T ss_dssp CHHHHH---------HHHHHHHHHHHH
T ss_pred cHHHHH---------HHHHHHHHHHHh
Confidence 368888 888888887754
No 10
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=8.83 E-value=4.1e+02 Score=18.70 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 044226 47 TIRGLIASVAIGIIYSVIVMKL 68 (667)
Q Consensus 47 T~Ra~ilG~il~~l~a~~n~~~ 68 (667)
...++++|++.+++.-..-.++
T Consensus 8 n~~~Iv~gvi~~ivliGl~lLl 29 (43)
T 2k9j_B 8 DILVVLLSVMGAILLIGLAALL 29 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEeehHHHHHHHHHHHHHHHHH
Confidence 5677777777776655444433
Done!