Query 044226
Match_columns 667
No_of_seqs 131 out of 1113
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 22:13:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044226.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044226hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zbdb_ g.50.1.1 (B:) Effector 11.3 35 0.0026 27.8 1.1 22 4-25 2-23 (124)
2 d2i09a2 d.327.1.1 (A:108-226) 8.7 47 0.0034 26.9 0.8 33 3-35 6-44 (119)
3 d1ucva_ a.60.1.2 (A:) Ephrin t 8.6 65 0.0047 23.8 1.6 37 4-40 39-77 (81)
4 d1wi3a_ a.4.1.1 (A:) DNA-bindi 8.3 68 0.005 23.2 1.6 45 3-52 12-56 (71)
5 d1gm5a1 a.24.21.1 (A:7-105) Re 7.2 69 0.0051 24.9 1.2 21 6-26 16-36 (99)
6 d2fcwa1 a.13.1.1 (A:216-320) a 7.2 62 0.0045 25.6 0.9 17 2-18 17-33 (105)
7 d1q90m_ f.23.25.1 (M:) PetM su 6.6 1.6E+02 0.012 17.7 2.4 16 635-650 2-17 (34)
8 d1iwga7 f.35.1.1 (A:7-37,A:331 6.5 2.5E+02 0.018 24.0 5.0 58 7-72 5-62 (199)
9 d2gy9m1 a.156.1.1 (M:1-114) Ri 6.4 87 0.0063 24.9 1.5 26 3-28 45-70 (114)
10 d2uubm1 a.156.1.1 (M:2-126) Ri 6.2 78 0.0057 25.7 1.1 24 3-26 45-69 (125)
No 1
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.31 E-value=35 Score=27.75 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=17.1
Q ss_pred CCChhhhhhhhhhccchhhhhh
Q 044226 4 RFGEEELKEIENVSHHEKEELD 25 (667)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~ 25 (667)
.|.+||.+.|++|+...+....
T Consensus 2 ~LT~eE~~~i~~VL~r~~~l~~ 23 (124)
T d1zbdb_ 2 ELTDEEKEIINRVIARAEKMET 23 (124)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999977654433
No 2
>d2i09a2 d.327.1.1 (A:108-226) Phosphopentomutase DeoB {Streptococcus mutans [TaxId: 1309]}
Probab=8.66 E-value=47 Score=26.95 Aligned_cols=33 Identities=24% Similarity=0.178 Sum_probs=18.2
Q ss_pred CCCChhhhhhhhhhccchhh------hhhhhhhhhhhcc
Q 044226 3 SRFGEEELKEIENVSHHEKE------ELDLEEIKDQTED 35 (667)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 35 (667)
.-||+|-++|+++..+...+ .-+||+++++-|.
T Consensus 6 ~gFP~eli~~~~~~~g~~~il~gN~~aSGT~II~~~Gee 44 (119)
T d2i09a2 6 NGFPEEIISKIEKFSGRKVIREANKPYSGTAVIDDFGPR 44 (119)
T ss_dssp TCCCHHHHHHHHHHHSCCBCGGGCSBCCCC---------
T ss_pred CCCCHHHHHHHHHHhCCCeeccCCccCcHHHHHHHHHHH
Confidence 35899999999987775544 3688998887654
No 3
>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.62 E-value=65 Score=23.85 Aligned_cols=37 Identities=11% Similarity=0.251 Sum_probs=25.6
Q ss_pred CCChhhhhhh--hhhccchhhhhhhhhhhhhhcccCCCC
Q 044226 4 RFGEEELKEI--ENVSHHEKEELDLEEIKDQTEDVKRIP 40 (667)
Q Consensus 4 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (667)
++.+|+|+|+ ++..|..++-+..++.+.+.++.+...
T Consensus 39 ~lt~~dL~~lGI~~~ghr~kIl~~i~~Lk~~~~~~~~~~ 77 (81)
T d1ucva_ 39 RMNAQDVRALGITLMGHQKKILGSIQTMRAQLTSTQGSG 77 (81)
T ss_dssp TCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHHSCCSSCS
T ss_pred hCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 5778888885 455677778777777777766654433
No 4
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.28 E-value=68 Score=23.19 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=25.7
Q ss_pred CCCChhhhhhhhhhccchhhhhhhhhhhhhhcccCCCCCCCCcchHHHHH
Q 044226 3 SRFGEEELKEIENVSHHEKEELDLEEIKDQTEDVKRIPPWTNHITIRGLI 52 (667)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~T~Ra~i 52 (667)
.+|.+|++.++|...++.|--.+.|+.+...+.- .++.-.++.|+
T Consensus 12 ~~~t~~Q~~~Le~~F~~~~~~P~~~~~~~La~~l-----gl~~~qV~~WF 56 (71)
T d1wi3a_ 12 TKISLEALGILQSFIHDVGLYPDQEAIHTLSAQL-----DLPKHTIIKFF 56 (71)
T ss_dssp CCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHS-----CCCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHh-----CCCHHHHHHHh
Confidence 4789999999998775434334444444444332 24444445443
No 5
>d1gm5a1 a.24.21.1 (A:7-105) RecG, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=7.22 E-value=69 Score=24.86 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=14.1
Q ss_pred Chhhhhhhhhhccchhhhhhh
Q 044226 6 GEEELKEIENVSHHEKEELDL 26 (667)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (667)
=||=|||+|+.+.+-..++++
T Consensus 16 iEdFLd~~e~il~~~~~~k~~ 36 (99)
T d1gm5a1 16 LEEFLNEVEKMLKNQVNTRRI 36 (99)
T ss_dssp HHHHHHHHHHHHTSCCCTTTH
T ss_pred HHHHHHHHHHHHHHHHhHHHH
Confidence 367899998877664444443
No 6
>d2fcwa1 a.13.1.1 (A:216-320) alpha-2-Macroglobulin receptor associated protein (RAP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.15 E-value=62 Score=25.60 Aligned_cols=17 Identities=12% Similarity=0.278 Sum_probs=12.8
Q ss_pred CCCCChhhhhhhhhhcc
Q 044226 2 ESRFGEEELKEIENVSH 18 (667)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (667)
++||.+|||+-+.+-++
T Consensus 17 ~~nFt~~EL~SlkeEL~ 33 (105)
T d2fcwa1 17 SANLTDKELEAFREELK 33 (105)
T ss_dssp TSCCCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHH
Confidence 68999999887755444
No 7
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.62 E-value=1.6e+02 Score=17.68 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=10.9
Q ss_pred hhhHhhHHhHHHHHHH
Q 044226 635 SGLICGDGLWILPSSI 650 (667)
Q Consensus 635 AgL~aG~ai~glii~~ 650 (667)
|++++|.++.-+-+.+
T Consensus 2 a~fiagta~tmig~tl 17 (34)
T d1q90m_ 2 AEFIAGTALTMVGMTL 17 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CceecchhHHHHHHHH
Confidence 6788888876555543
No 8
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.54 E-value=2.5e+02 Score=23.99 Aligned_cols=58 Identities=21% Similarity=0.102 Sum_probs=31.3
Q ss_pred hhhhhhhhhhccchhhhhhhhhhhhhhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhccc
Q 044226 7 EEELKEIENVSHHEKEELDLEEIKDQTEDVKRIPPWTNHITIRGLIASVAIGIIYSVIVMKLNLTT 72 (667)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~T~Ra~ilG~il~~l~a~~n~~~~lr~ 72 (667)
+.|.+|++..++...-+..+|..|++++= =+.+.+-..-.++.+++....-.++.+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~l~v~~~~~~f--------i~~si~~~~~~l~ia~~lv~~vl~l~~rs 62 (199)
T d1iwga7 5 FAWVIAIIIMLAGGLAILKLPVAQYPTPF--------VKISIHEVVKTLVEAIILVFLVMYLFLQN 62 (199)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCSSCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhhCccccceeEEeecCcHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777777766665555555444321 12334444444555555555556666664
No 9
>d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli [TaxId: 562]}
Probab=6.35 E-value=87 Score=24.94 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=19.1
Q ss_pred CCCChhhhhhhhhhccchhhhhhhhh
Q 044226 3 SRFGEEELKEIENVSHHEKEELDLEE 28 (667)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (667)
..|.+||++.+++..+.-..|-|++.
T Consensus 45 ~~Lt~~qi~~l~~~i~~~~i~~~L~~ 70 (114)
T d2gy9m1 45 SELSEGQIDTLRDEVAKFVVEGDLRR 70 (114)
T ss_dssp TSCCHHHHHHHHHHHHSSCCSHHHHH
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHH
Confidence 35789999999888776666666544
No 10
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]}
Probab=6.19 E-value=78 Score=25.72 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=16.0
Q ss_pred CCCChhhhhhhhhhccc-hhhhhhh
Q 044226 3 SRFGEEELKEIENVSHH-EKEELDL 26 (667)
Q Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~~~~ 26 (667)
..|++||+++|++.... -..|-|+
T Consensus 45 ~~Lt~~qi~~I~~~i~~~~~i~~~L 69 (125)
T d2uubm1 45 KDLTEAEVVRLREYVENTWKLEGEL 69 (125)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCTTHH
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHH
Confidence 46889999999987742 3444443
Done!