BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044228
(703 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 103/244 (42%), Gaps = 10/244 (4%)
Query: 287 ENGLHLLALAGL----REEIKSTVEALRNAGVRIILVSEDELLAVTEVACELGNF--RPE 340
E L + + G+ R+E+ +++ R+AG+R+I+++ D + +G F E
Sbjct: 588 ETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEE 647
Query: 341 SNDIALEGEQFRELNSTERMAKLDSMTLMGSCLAADKLLLVQTAKEKGHVVAFFGGSSTR 400
D A G +F +L E+ + K +V+ + + A G
Sbjct: 648 VADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITA-MTGDGVN 706
Query: 401 DTPALKEADVGITEENKCTEMARECSDIVIS--TVGSLLPILKLGRCAYCNIQKFTKLQL 458
D PALK+A++GI T +A+ S++V++ +++ ++ GR Y N+++F + +
Sbjct: 707 DAPALKKAEIGIA-MGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLI 765
Query: 459 TGCASGXXXXXXXXXXXEESPITSIQLIWVYCIMYILGGLMMRMEFKDQEPVTNPPARRT 518
+ + +QL+WV + L + D + + PP
Sbjct: 766 SSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPK 825
Query: 519 KSLL 522
+ L+
Sbjct: 826 EPLI 829
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 75 HGMPFVITVSLFFWKEKLLINHHAKPQNLSAGATMGIASVICIDVTGGLLCNRVDVSKFC 134
G+P VIT L ++ +A ++L + T+G SVIC TG L N++ V K
Sbjct: 309 EGLPAVITTCLALGTRRM-AKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCKMF 367
Query: 135 IGEKDVNNDVAS 146
I +K V+ D S
Sbjct: 368 IIDK-VDGDFCS 378
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 103/244 (42%), Gaps = 10/244 (4%)
Query: 287 ENGLHLLALAGL----REEIKSTVEALRNAGVRIILVSEDELLAVTEVACELGNF--RPE 340
E L + + G+ R+E+ +++ R+AG+R+I+++ D + +G F E
Sbjct: 589 ETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEE 648
Query: 341 SNDIALEGEQFRELNSTERMAKLDSMTLMGSCLAADKLLLVQTAKEKGHVVAFFGGSSTR 400
D A G +F +L E+ + K +V+ + + A G
Sbjct: 649 VADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITA-MTGDGVN 707
Query: 401 DTPALKEADVGITEENKCTEMARECSDIVIS--TVGSLLPILKLGRCAYCNIQKFTKLQL 458
D PALK+A++GI T +A+ S++V++ +++ ++ GR Y N+++F + +
Sbjct: 708 DAPALKKAEIGIA-MGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLI 766
Query: 459 TGCASGXXXXXXXXXXXEESPITSIQLIWVYCIMYILGGLMMRMEFKDQEPVTNPPARRT 518
+ + +QL+WV + L + D + + PP
Sbjct: 767 SSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPK 826
Query: 519 KSLL 522
+ L+
Sbjct: 827 EPLI 830
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 75 HGMPFVITVSLFFWKEKLLINHHAKPQNLSAGATMGIASVICIDVTGGLLCNRVDVSKFC 134
G+P VIT L ++ +A ++L + T+G SVIC D TG L N++ V K
Sbjct: 310 EGLPAVITTCLALGTRRM-AKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMF 368
Query: 135 IGEKDVNNDVAS 146
I +K V+ D S
Sbjct: 369 IIDK-VDGDFCS 379
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 103/244 (42%), Gaps = 10/244 (4%)
Query: 287 ENGLHLLALAGL----REEIKSTVEALRNAGVRIILVSEDELLAVTEVACELGNF--RPE 340
E L + + G+ R+E+ +++ R+AG+R+I+++ D + +G F E
Sbjct: 588 ETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEE 647
Query: 341 SNDIALEGEQFRELNSTERMAKLDSMTLMGSCLAADKLLLVQTAKEKGHVVAFFGGSSTR 400
D A G +F +L E+ + K +V+ + + A G
Sbjct: 648 VADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITA-MTGDGVN 706
Query: 401 DTPALKEADVGITEENKCTEMARECSDIVIS--TVGSLLPILKLGRCAYCNIQKFTKLQL 458
D PALK+A++GI T +A+ S++V++ +++ ++ GR Y N+++F + +
Sbjct: 707 DAPALKKAEIGIA-MGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLI 765
Query: 459 TGCASGXXXXXXXXXXXEESPITSIQLIWVYCIMYILGGLMMRMEFKDQEPVTNPPARRT 518
+ + +QL+WV + L + D + + PP
Sbjct: 766 SSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPK 825
Query: 519 KSLL 522
+ L+
Sbjct: 826 EPLI 829
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 75 HGMPFVITVSLFFWKEKLLINHHAKPQNLSAGATMGIASVICIDVTGGLLCNRVDVSKFC 134
G+P VIT L ++ +A ++L + T+G SVIC D TG L N++ V K
Sbjct: 309 EGLPAVITTCLALGTRRM-AKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMF 367
Query: 135 IGEKDVNNDVAS 146
I +K V+ D S
Sbjct: 368 IIDK-VDGDFCS 378
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/244 (20%), Positives = 102/244 (41%), Gaps = 10/244 (4%)
Query: 287 ENGLHLLALAGL----REEIKSTVEALRNAGVRIILVSEDELLAVTEVACELGNFRPESN 342
E L + + G+ R+E+ +++ R+AG+R+I+++ D + +G F +
Sbjct: 587 ETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENED 646
Query: 343 --DIALEGEQFRELNSTERMAKLDSMTLMGSCLAADKLLLVQTAKEKGHVVAFFGGSSTR 400
D A G +F +L E+ K +V+ + + A G
Sbjct: 647 VADRAYTGREFDDLPLAEQREACRRACCFARVEPTHKSKIVEYLQSFDEITA-MTGDGVN 705
Query: 401 DTPALKEADVGITEENKCTEMARECSDIVIS--TVGSLLPILKLGRCAYCNIQKFTKLQL 458
D PALK+A++GI T +A+ S++V++ +++ ++ GR Y N+++F + +
Sbjct: 706 DAPALKKAEIGIA-MGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLI 764
Query: 459 TGCASGXXXXXXXXXXXEESPITSIQLIWVYCIMYILGGLMMRMEFKDQEPVTNPPARRT 518
+ + +QL+WV + L + D + + PP
Sbjct: 765 SSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRTPK 824
Query: 519 KSLL 522
+ L+
Sbjct: 825 EPLI 828
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 75 HGMPFVITVSLFFWKEKLLINHHAKPQNLSAGATMGIASVICIDVTGGLLCNRVDVSKFC 134
G+P VIT L ++ +A ++L + T+G SVIC D TG L N++ V K
Sbjct: 309 EGLPAVITTCLALGTRRM-AKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMF 367
Query: 135 I 135
I
Sbjct: 368 I 368
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 97/422 (22%), Positives = 164/422 (38%), Gaps = 72/422 (17%)
Query: 38 NVSVGTVVKLFERFLLKPQGKISILVSALTVVAIAVQHGMPFVITVSLFFWKEKLLINHH 97
++++G V+++ + ++ + + + L ++ + MP V++V++ +L
Sbjct: 250 SIAIGMVIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLS-QQG 308
Query: 98 AKPQNLSAGATMGIASVICIDVTGGLLCNRVDVSK-----FCIG-EKD---VNNDVASEI 148
A + ++A M V+C D TG L N++ V K FC G EKD + +AS +
Sbjct: 309 AITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFAAMASRV 368
Query: 149 -NQAVLQALERGIGASVLVPEISVWPTTDWLVSWAKSRSLNVDQNLSIVQYRKLSSHNKV 207
NQ + A G+ L ++R+ + V + + +K
Sbjct: 369 ENQDAIDAAMVGM-----------------LADPKEARA-----GIREVHFLPFNPVDKR 406
Query: 208 CGVLMKINGGDEDKIMHINW----SGTASTILNMCSYYYDSEGKSFEIKGEKRRFQKLIK 263
L I+G NW G IL + D K I I
Sbjct: 407 TA-LTYIDGSG-------NWHRVSKGAPEQILELAKASNDLSKKVLSI----------ID 448
Query: 264 DMEDSGLRPIAFACGQTEVSEIKENGLHLLALAGL-------REEIKSTVEALRNAGVRI 316
+ GLR +A A Q + KE+ GL R + T+ N GV +
Sbjct: 449 KYAERGLRSLAVAR-QVVPEKTKESPGAPWEFVGLLPLFDPPRHDSAETIRRALNLGVNV 507
Query: 317 ILVSEDELLAVTEVACELG---NFRPESNDIALEGE-QFRELNSTERMAKLDSMTLMGSC 372
+++ D+L E LG N P S + + + E + K D
Sbjct: 508 KMITGDQLAIGKETGRRLGMGTNMYPSSALLGTHKDANLASIPVEELIEKADGF---AGV 564
Query: 373 LAADKLLLVQTAKEKGHVVAFFGGSSTRDTPALKEADVGITEENKCTEMARECSDIVIST 432
K +V+ +E+ H+V G D PALK+AD+GI + T+ AR SDIV++
Sbjct: 565 FPEHKYEIVKKLQERKHIVGM-TGDGVNDAPALKKADIGIAVAD-ATDAARGASDIVLTE 622
Query: 433 VG 434
G
Sbjct: 623 PG 624
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 88/200 (44%), Gaps = 34/200 (17%)
Query: 293 LALAGL-------REEIKSTVEALRNAGVRIILVSEDELLAVTEVACELGNF-------- 337
L+ AGL R + V R AG+R+I+V+ D + +A +G
Sbjct: 593 LSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVE 652
Query: 338 --------------RPESNDIALEGEQFRELNSTERMAKLDSMTLM--GSCLAADKLLLV 381
R ++ + G Q ++++ +E + L + M KL++V
Sbjct: 653 DIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIV 712
Query: 382 QTAKEKGHVVAFFGGSSTRDTPALKEADVGITEENKCTEMARECSDIVI--STVGSLLPI 439
++ + G +VA G D+PALK+AD+G+ ++ A+ +D+++ S++
Sbjct: 713 ESCQRLGAIVAV-TGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTG 771
Query: 440 LKLGRCAYCNIQKFTKLQLT 459
++ GR + N++K LT
Sbjct: 772 VEQGRLIFDNLKKSIAYTLT 791
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 62 LVSALTVVAIAVQHGMPFVITVSLFFWKEKLLINHHAKPQNLSAGATMGIASVICIDVTG 121
+V + +V V G+ +TV L K L + + +NL A T+G SVIC D TG
Sbjct: 331 MVFFMAIVVAYVPEGLLATVTVCLSL-TAKRLASKNCVVKNLEAVETLGSTSVICSDKTG 389
Query: 122 GLLCNRVDVS 131
L NR+ VS
Sbjct: 390 TLTQNRMTVS 399
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 95/464 (20%), Positives = 185/464 (39%), Gaps = 77/464 (16%)
Query: 66 LTVVAIAVQHGMPFVITVSLFFWKEKLLINHHAKPQNLSAGATMGIASVICIDVTGGLLC 125
+ ++ V G+ +TV L K + + +NL A T+G S IC D TG L
Sbjct: 330 IGIIVANVPEGLLATVTVCLTL-TAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQ 388
Query: 126 NRVDVSKFC----IGEKDVNND------------------VASEINQAVLQALERGIGAS 163
NR+ V+ I E D + +A+ N+AV QA + +
Sbjct: 389 NRMTVAHMWFDNQIHEADTTENQSGAAFDKTSATWSALSRIAALCNRAVFQAGQDNV--P 446
Query: 164 VLVPEISVWPTTDWLVSWAKSRSLNV----DQNLSIVQYRKLSSHNKVCGVLMKINGGDE 219
+L ++ + L+ + +V D+N IV+ +S NK + + E
Sbjct: 447 ILKRSVAGDASESALLKCIELCCGSVQGMRDRNPKIVEI-PFNSTNKYQLSIHENEKSSE 505
Query: 220 DKIMHINWSGTASTILNMCSYYYDSEGKSFEIKGEKRRFQKLIKDMEDSGLRPIAF---A 276
+ + + G IL+ CS + + + K FQ ++ G R + F A
Sbjct: 506 SRYLLV-MKGAPERILDRCSTILLNGAEEPLKEDMKEAFQNAYLELGGLGERVLGFCHFA 564
Query: 277 CGQTEVSE----------IKENGLHLLALAGL----REEIKSTVEALRNAGVRIILVSED 322
+ + +E L + L + R + V R+AG+++I+V+ D
Sbjct: 565 LPEDKYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGD 624
Query: 323 ELLAVTEVA---------------------CELGNFRP-ESNDIALEGEQFRELNSTERM 360
+ +A +G P ++ + G ++L STE +
Sbjct: 625 HPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDL-STEVL 683
Query: 361 AKL---DSMTLMGSCLAADKLLLVQTAKEKGHVVAFFGGSSTRDTPALKEADVGITEENK 417
+ + + KL++V+ + +G +VA G D+PALK+AD+G+
Sbjct: 684 DDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAV-TGDGVNDSPALKKADIGVAMGIS 742
Query: 418 CTEMARECSDIVI--STVGSLLPILKLGRCAYCNIQKFTKLQLT 459
++++++ +D+++ S++ ++ GR + N++K LT
Sbjct: 743 GSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLT 786
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 101/467 (21%), Positives = 177/467 (37%), Gaps = 87/467 (18%)
Query: 68 VVAIAVQHGMPFVITVSLFFWKEKLLINHHAKPQNLSAGATMGIASVICIDVTGGLLCNR 127
++ V G+ +TV L K + + +NL A T+G S IC D TG L NR
Sbjct: 302 IIVANVPEGLLATVTVCLTL-TAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNR 360
Query: 128 VDVSKFC----IGEKDVNND------------------VASEINQAVLQA-------LER 158
+ V+ I E D + +A N+AV QA L+R
Sbjct: 361 MTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKR 420
Query: 159 GIGASVLVPEISVWPTTDWLVSWAKSRSLNVDQNLSIVQYRKLSSHNKVCGVLMKINGGD 218
+ E ++ + K ++ IV+ +S NK + K
Sbjct: 421 AVAGDA--SESALLKCIELCCGSVKEMR---ERYTKIVEI-PFNSTNKYQLSIHKNPNTA 474
Query: 219 EDKIMHINWSGTASTILNMCSYYYDSEGKSFEIKGE-KRRFQKLIKDMEDSGLRPIAFAC 277
E + + + G IL+ CS GK + E K FQ ++ G R + F C
Sbjct: 475 EPRHLLV-MKGAPERILDRCSSIL-IHGKEQPLDEELKDAFQNAYLELGGLGERVLGF-C 531
Query: 278 GQTEVSEIKENGLHL-----------LALAGL-------REEIKSTVEALRNAGVRIILV 319
E G L GL R + V R+AG+++I+V
Sbjct: 532 HLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMV 591
Query: 320 SEDELLAVTEVACELGNFRPESN----DIA-------------------LEGEQFRELNS 356
+ D + +A +G E N DIA + G +++ S
Sbjct: 592 TGDHPITAKAIAKGVGIIS-EGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTS 650
Query: 357 TE--RMAKLDSMTLMGSCLAADKLLLVQTAKEKGHVVAFFGGSSTRDTPALKEADVGITE 414
+ + K + + KL++V+ + +G +VA G D+PA K+AD+G+
Sbjct: 651 EQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAV-TGDGVNDSPASKKADIGVAM 709
Query: 415 ENKCTEMARECSDIVI--STVGSLLPILKLGRCAYCNIQKFTKLQLT 459
++++++ +D+++ S++ ++ GR + N++K LT
Sbjct: 710 GIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLT 756
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 85/188 (45%), Gaps = 29/188 (15%)
Query: 299 REEIKSTVEALRNAGVRIILVSEDELLAVTEVACELGNFRPESN----DIA--------- 345
R + V R+AG+++I+V+ D + +A +G E N DIA
Sbjct: 565 RAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIIS-EGNETVEDIAARLNIPVSQ 623
Query: 346 ----------LEGEQFRELNSTE--RMAKLDSMTLMGSCLAADKLLLVQTAKEKGHVVAF 393
+ G +++ S + + K + + KL++V+ + +G +VA
Sbjct: 624 VNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAV 683
Query: 394 FGGSSTRDTPALKEADVGITEENKCTEMARECSDIVI--STVGSLLPILKLGRCAYCNIQ 451
G D+PA K+AD+G+ ++++++ +D+++ S++ ++ GR + N++
Sbjct: 684 -TGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLK 742
Query: 452 KFTKLQLT 459
K LT
Sbjct: 743 KSIAYTLT 750
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 4/157 (2%)
Query: 299 REEIKSTVEALRNAGVRIILVSEDELLAVTEVACELGNFRPESNDIALEGEQFRELNSTE 358
R + TV + G+ I +++ D + E + +LG N L ++ +E
Sbjct: 537 RHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGDMPGSE 596
Query: 359 RMAKLDSMTLMGSCLAADKLLLVQTAKEKGHVVAFFGGSSTRDTPALKEADVGITEENKC 418
+++ K +V+ +++G++VA G D P+LK+AD GI E
Sbjct: 597 VYDFVEAADGFAEVFPQHKYNVVEILQQRGYLVAM-TGDGVNDAPSLKKADTGIAVEG-S 654
Query: 419 TEMARECSDIVI--STVGSLLPILKLGRCAYCNIQKF 453
++ AR +DIV +G+++ LK R + + +
Sbjct: 655 SDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAY 691
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 59 ISILVSALTVVAIAVQHGMPFVITVSL-----FFWKEKLLINHHAKPQNLSAGATMGIAS 113
+ IL L + I V G+P V+T ++ + K+K ++ Q LSA ++
Sbjct: 320 VQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIV------QKLSAIESLAGVE 373
Query: 114 VICIDVTGGLLCNRV 128
++C D TG L N++
Sbjct: 374 ILCSDKTGTLTKNKL 388
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 293 LALAGLREEIKSTVEALRNAGVRIILVSEDELLAVTEVAC-ELGNFRPESNDIALEGEQF 351
LAL L E K+ V RN V I+ D L + A EL + I G+ +
Sbjct: 427 LALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMIT--GDNW 484
Query: 352 RELNSTERMAKLDSMTLMGSCLAADKLLLVQTAKEKGHVVAFFGGSSTRDTPALKEADVG 411
R + R LD ++ L K V+ + K VVAF G D PAL +AD+G
Sbjct: 485 RSAEAISRELNLD--LVIAEVLPHQKSEEVKKLQAK-EVVAFVG-DGINDAPALAQADLG 540
Query: 412 ITEENKCTEMARECSDIVI 430
I +++A E DIV+
Sbjct: 541 IA-VGSGSDVAVESGDIVL 558
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 293 LALAGLREEIKSTVEALRNAGVRIILVSEDELLAVTEVAC-ELGNFRPESNDIALEGEQF 351
LAL L E K+ V RN V I+ D L + A EL + I G+ +
Sbjct: 505 LALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMIT--GDNW 562
Query: 352 RELNSTERMAKLDSMTLMGSCLAADKLLLVQTAKEKGHVVAFFGGSSTRDTPALKEADVG 411
R + R LD ++ L K V+ + K VVAF G D PAL +AD+G
Sbjct: 563 RSAEAISRELNLD--LVIAEVLPHQKSEEVKKLQAK-EVVAFVG-DGINDAPALAQADLG 618
Query: 412 ITEENKCTEMARECSDIVI 430
I +++A E DIV+
Sbjct: 619 IA-VGSGSDVAVESGDIVL 636
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 368 LMGSCLAADKLLLVQTAKEKGHVVAFFGGSSTRDTPALKEADVGITEENKCTEMARECSD 427
++ + DK +V K+KG +VA G D PAL +AD+GI T++A E +
Sbjct: 596 VVAEIMPEDKSRIVSELKDKGLIVAM-AGDGVNDAPALAKADIGIA-MGTGTDVAIESAG 653
Query: 428 IVI 430
+ +
Sbjct: 654 VTL 656
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 293 LALAGLREEIKSTVEALRNAGVRIILVSEDELLAVTEVAC-ELGNFRPESNDIALEGEQF 351
LAL L E K+ V RN V I+ D L + A EL + I G+ +
Sbjct: 113 LALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRXGIKVGXIT--GDNW 170
Query: 352 RELNSTERMAKLDSMTLMGSCLAADKLLLVQTAKEKGHVVAFFGGSSTRDTPALKEADVG 411
R + R LD ++ L K V+ + K VVAF G D PAL +AD+G
Sbjct: 171 RSAEAISRELNLD--LVIAEVLPHQKSEEVKKLQAK-EVVAFVG-DGINDAPALAQADLG 226
Query: 412 ITEENKCTEMARECSDIVI 430
I +++A E DIV+
Sbjct: 227 IA-VGSGSDVAVESGDIVL 244
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 396 GSSTRDTPALKEADVGITEENKCTEMARECSDIVI--STVGSLLPILKLGRCAYCNIQ 451
G D PAL +ADVGI T++A E +DIV+ + + I++L R Y ++
Sbjct: 212 GDGVNDAPALAQADVGIA-IGAGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKLE 268
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 35/166 (21%)
Query: 292 LLALAG-LREEIKSTVEALRNAGVRIILVSEDELLAVTEVACELGNFRPESNDIALEGEQ 350
++ALA +R E + + L+ G++ ++++ D VA ELG
Sbjct: 138 VIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELG--------------- 182
Query: 351 FRELNSTERMAKLDSMTLMGSCLAADKLLLVQTAKEKGHVVAFFGGSSTRDTPALKEADV 410
LD L +K V+ ++K +V A G D PAL +ADV
Sbjct: 183 ------------LDD--YFAEVLPHEKAEKVKEVQQK-YVTAMVG-DGVNDAPALAQADV 226
Query: 411 GITEENKCTEMARECSDIVI--STVGSLLPILKLGRCAYCNIQKFT 454
GI T++A E +DIV+ + + I++L R Y +
Sbjct: 227 GIA-IGAGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKFHGLS 271
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 293 LALAGLREEIKSTVEALRNAGVRIILVSEDELLAVTEVAC-ELGNFRPESNDIALEGEQF 351
LAL L E K+ V RN V I+ D L + A EL + I G+ +
Sbjct: 133 LALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMIT--GDNW 190
Query: 352 RELNSTERMAKLDSMTLMGSCLAADKLLLVQTAKEKGHVVAFFGGSSTRDTPALKEADVG 411
R + R LD ++ L K V+ + K VVAF G D PAL +AD+G
Sbjct: 191 RSAEAISRELNLD--LVIAEVLPHQKSEEVKKLQAK-EVVAFVG-DGINDAPALAQADLG 246
Query: 412 ITEENKCTEMARECSDIVI 430
I +++A E DIV+
Sbjct: 247 IA-VGSGSDVAVESGDIVL 264
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 293 LALAGLREEIKSTVEALRNAGVRIILVSEDELLAVTEVAC-ELGNFRPESNDIALEGEQF 351
LAL L E K+ V RN V I+ D L + A EL + I G+ +
Sbjct: 133 LALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMIT--GDNW 190
Query: 352 RELNSTERMAKLDSMTLMGSCLAADKLLLVQTAKEKGHVVAFFGGSSTRDTPALKEADVG 411
R + R LD ++ L K V+ + K VVAF G D PAL +AD+G
Sbjct: 191 RSAEAISRELNLD--LVIAEVLPHQKSEEVKKLQAK-EVVAFVG-DGINDAPALAQADLG 246
Query: 412 ITEENKCTEMARECSDIVI 430
I +++A E DIV+
Sbjct: 247 IA-VGSGSDVAVESGDIVL 264
>pdb|1CJX|A Chain A, Crystal Structure Of Pseudomonas Fluorescens Hppd
pdb|1CJX|B Chain B, Crystal Structure Of Pseudomonas Fluorescens Hppd
pdb|1CJX|C Chain C, Crystal Structure Of Pseudomonas Fluorescens Hppd
pdb|1CJX|D Chain D, Crystal Structure Of Pseudomonas Fluorescens Hppd
Length = 357
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 25/173 (14%)
Query: 220 DKIMHINWSGTASTILNMCSYYYD-SEGKSFEIKGEKRRFQKLIKDMEDSGLR-PI---- 273
D + H + G N ++ E + F+IKGE D +R P+
Sbjct: 160 DHLTHNVYRGRMVYWANFYEKLFNFREARYFDIKGEYTGLTSKAMSAPDGMIRIPLNEES 219
Query: 274 AFACGQTEVSEIKENGLHLLALAGLREEIKSTVEALRNAGVRIILVSEDELLAVTEVACE 333
+ GQ E ++ NG + +A L +++ T +AL+ G+R + D + E
Sbjct: 220 SKGAGQIEEFLMQFNGEGIQHVAFLTDDLVKTWDALKKIGMRFMTAPPDTYYEMLE---- 275
Query: 334 LGNFRPESNDIALEGEQFRELNSTERMAKLDSMTLMGSCLAADKLLLVQTAKE 386
+ GE +L + + L GS + DK LL+Q E
Sbjct: 276 --------GRLPDHGEPVDQLQAR-------GILLDGSSVEGDKRLLLQIFSE 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,323,987
Number of Sequences: 62578
Number of extensions: 680229
Number of successful extensions: 1616
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1577
Number of HSP's gapped (non-prelim): 29
length of query: 703
length of database: 14,973,337
effective HSP length: 106
effective length of query: 597
effective length of database: 8,340,069
effective search space: 4979021193
effective search space used: 4979021193
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)