BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044234
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 74/169 (43%), Gaps = 25/169 (14%)
Query: 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPE------ITGRMEHLSNLH---LEGTAIREL 52
L++LP +I+ L L L++ + E PE +G + L NL LE T IR L
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198
Query: 53 PVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSGCSKIVKFPESVISMEDLSE 112
P SI L L L +++ LS L + L L L L GC+ + +P L
Sbjct: 199 PASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257
Query: 113 LFLDRTSITEECKMLQNLPRLPASIHWIL------LNGCVSLEILSDVL 155
L L ++C NL LP IH + L GCV+L L ++
Sbjct: 258 LIL------KDCS---NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 28 EFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRN-LSTLPITVSSLKCL 86
+FP+ R+ HL + ++ + ELP + + +GL L L RN L LP +++SL L
Sbjct: 95 QFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTL--ARNPLRALPASIASLNRL 152
Query: 87 RTLKLSGCSKIVKFPESVISMEDLSE 112
R L + C ++ + PE + S + E
Sbjct: 153 RELSIRACPELTELPEPLASTDASGE 178
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEG-TAIRELPVSIELLS 60
++SLP +I+ L++L +L + + P I + L L L G TA+R P +
Sbjct: 195 IRSLPASIANLQNLKSLKIRNSPLSALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRA 253
Query: 61 GLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSGCSKIVKFPESVISM 107
L L LKDC NL TLP+ + L L L L GC + + P + +
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|2QUF|A Chain A, Crystal Structure Of Transcription Factor Axxa-pf0095 From
Pyrococcus Furiosus
pdb|2QUF|B Chain B, Crystal Structure Of Transcription Factor Axxa-pf0095 From
Pyrococcus Furiosus
Length = 232
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 135 ASIHWILLNGCVSLEILSDVLKLNEHRL 162
A +H++LLNG ++E LSD L L E +
Sbjct: 168 AILHYLLLNGRATVEELSDRLNLKEREV 195
>pdb|2QLZ|A Chain A, Crystal Structure Of Transcription Factor Pf0095 From
Pyrococcus Furiosus
pdb|2QLZ|B Chain B, Crystal Structure Of Transcription Factor Pf0095 From
Pyrococcus Furiosus
pdb|2QLZ|C Chain C, Crystal Structure Of Transcription Factor Pf0095 From
Pyrococcus Furiosus
pdb|2QLZ|D Chain D, Crystal Structure Of Transcription Factor Pf0095 From
Pyrococcus Furiosus
Length = 232
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 135 ASIHWILLNGCVSLEILSDVLKLNEHRL 162
A +H++LLNG ++E LSD L L E +
Sbjct: 168 AILHYLLLNGRATVEELSDRLNLKEREV 195
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 1 NLKSLPRNI-SGLKSLSTLNLSGTSKFREFPE-ITGRMEHLSNLHLEGTAIRELPVSIEL 58
L +LP + L L+ L+L GT++ P + R+ HL L + + ELP IE
Sbjct: 75 QLGALPVGVFDSLTQLTVLDL-GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIER 133
Query: 59 LSGLVLLNLKDCRNLSTLP 77
L+ L L L D L ++P
Sbjct: 134 LTHLTHLAL-DQNQLKSIP 151
>pdb|1F6P|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F73|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F74|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii Complexed
With 4-Deoxy-Sialic Acid
pdb|1F74|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii Complexed
With 4-Deoxy-Sialic Acid
pdb|1F7B|A Chain A, Crystal Structure Analysis Of N-acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii In Complex
With 4-oxo-sialic Acid
pdb|1F7B|C Chain C, Crystal Structure Analysis Of N-acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii In Complex
With 4-oxo-sialic Acid
pdb|1F5Z|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F6K|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii
pdb|1F6K|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii
Length = 293
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 8 NISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNL 67
N++G+++ L+ K +E EI +H++N +EG L ++I+ L L ++
Sbjct: 210 NVNGVRARQIFELTKAGKLKEALEI----QHVTNDLIEGILANGLYLTIKELLKLEGVDA 265
Query: 68 KDCRNLSTLPITVSSLKCLRTLK 90
CR T T + + LK
Sbjct: 266 GYCREPMTSKATAEQVAKAKDLK 288
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 5 LPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVL 64
+P +S +L+ ++LS E P+ GR+E+L+ L L + SG +
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS----------FSGNIP 531
Query: 65 LNLKDCRNL 73
L DCR+L
Sbjct: 532 AELGDCRSL 540
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,079,417
Number of Sequences: 62578
Number of extensions: 315109
Number of successful extensions: 649
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 629
Number of HSP's gapped (non-prelim): 29
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)