Query 044234
Match_columns 276
No_of_seqs 394 out of 2593
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 12:44:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 9.2E-22 2E-26 199.7 19.1 172 61-251 779-1006(1153)
2 PLN00113 leucine-rich repeat r 99.5 1.4E-13 3.1E-18 138.6 10.2 117 5-121 156-273 (968)
3 PLN00113 leucine-rich repeat r 99.4 3.1E-13 6.7E-18 136.1 10.3 119 4-122 179-298 (968)
4 PLN03210 Resistant to P. syrin 99.4 1.8E-12 4E-17 132.2 13.3 113 3-120 624-737 (1153)
5 KOG0617 Ras suppressor protein 99.4 3.8E-15 8.2E-20 116.7 -5.2 107 12-120 32-139 (264)
6 KOG0617 Ras suppressor protein 99.3 6.7E-14 1.4E-18 109.8 -2.3 144 2-152 45-189 (264)
7 KOG0444 Cytoskeletal regulator 99.2 9E-13 2E-17 121.2 -3.0 150 3-154 212-381 (1255)
8 KOG0444 Cytoskeletal regulator 99.2 3.7E-12 8E-17 117.3 -0.7 89 5-95 95-184 (1255)
9 KOG4194 Membrane glycoprotein 99.1 5.7E-12 1.2E-16 115.1 -1.2 113 9-121 265-378 (873)
10 KOG0472 Leucine-rich repeat pr 99.1 1.9E-12 4.1E-17 113.5 -4.9 107 12-122 182-289 (565)
11 KOG4194 Membrane glycoprotein 99.1 7.3E-11 1.6E-15 108.0 5.0 119 3-121 115-234 (873)
12 KOG0618 Serine/threonine phosp 99.0 3.6E-11 7.8E-16 114.9 0.3 108 33-147 379-488 (1081)
13 PLN03150 hypothetical protein; 99.0 6.4E-10 1.4E-14 106.8 7.9 105 15-119 420-526 (623)
14 KOG0472 Leucine-rich repeat pr 99.0 5.7E-11 1.2E-15 104.4 -0.6 115 4-121 426-541 (565)
15 PF14580 LRR_9: Leucine-rich r 99.0 1.5E-10 3.3E-15 93.0 1.5 133 9-146 15-151 (175)
16 PRK15387 E3 ubiquitin-protein 98.9 6.1E-09 1.3E-13 101.1 10.3 134 1-152 212-358 (788)
17 PRK15370 E3 ubiquitin-protein 98.9 7E-09 1.5E-13 100.9 10.5 106 2-120 190-295 (754)
18 PRK15370 E3 ubiquitin-protein 98.8 1.5E-08 3.2E-13 98.6 10.4 138 2-153 211-363 (754)
19 PLN03150 hypothetical protein; 98.8 7.9E-09 1.7E-13 99.3 7.5 111 38-150 419-530 (623)
20 PF13855 LRR_8: Leucine rich r 98.7 1.2E-08 2.6E-13 67.5 4.2 57 38-94 2-59 (61)
21 cd00116 LRR_RI Leucine-rich re 98.7 1.1E-09 2.3E-14 96.5 -1.4 18 33-50 77-94 (319)
22 PF14580 LRR_9: Leucine-rich r 98.7 1.2E-08 2.5E-13 82.1 4.2 114 26-146 9-124 (175)
23 KOG1259 Nischarin, modulator o 98.7 1.4E-09 3.1E-14 92.6 -1.3 128 12-146 283-410 (490)
24 PRK15387 E3 ubiquitin-protein 98.7 7.1E-08 1.5E-12 93.8 10.0 45 2-53 234-278 (788)
25 KOG0618 Serine/threonine phosp 98.7 1.9E-09 4.2E-14 103.3 -0.8 107 9-119 379-487 (1081)
26 KOG4658 Apoptotic ATPase [Sign 98.7 4E-09 8.7E-14 104.1 1.1 86 9-94 567-652 (889)
27 KOG0532 Leucine-rich repeat (L 98.7 1.2E-09 2.5E-14 99.9 -2.4 115 3-121 111-247 (722)
28 PF13855 LRR_8: Leucine rich r 98.6 3.8E-08 8.2E-13 65.1 3.8 58 13-71 1-60 (61)
29 PRK15386 type III secretion pr 98.6 1.4E-07 3E-12 85.0 8.0 145 10-178 49-216 (426)
30 cd00116 LRR_RI Leucine-rich re 98.6 8.3E-09 1.8E-13 90.8 0.2 134 13-146 108-261 (319)
31 KOG4658 Apoptotic ATPase [Sign 98.5 3E-08 6.6E-13 98.0 2.5 109 12-121 544-655 (889)
32 KOG4237 Extracellular matrix p 98.4 5.1E-09 1.1E-13 92.0 -5.3 90 2-94 58-150 (498)
33 KOG4237 Extracellular matrix p 98.4 1.9E-08 4E-13 88.6 -2.6 122 2-124 79-204 (498)
34 COG4886 Leucine-rich repeat (L 98.4 1.6E-07 3.5E-12 85.4 3.1 137 2-145 128-265 (394)
35 COG4886 Leucine-rich repeat (L 98.4 1.5E-07 3.3E-12 85.6 2.5 109 9-120 112-221 (394)
36 KOG0532 Leucine-rich repeat (L 98.3 6.8E-08 1.5E-12 88.6 -0.7 112 2-117 155-269 (722)
37 PRK15386 type III secretion pr 98.2 2.9E-06 6.2E-11 76.6 7.4 75 34-119 49-123 (426)
38 KOG1259 Nischarin, modulator o 98.2 1.7E-07 3.7E-12 80.1 -1.5 115 3-121 297-412 (490)
39 PF12799 LRR_4: Leucine Rich r 98.1 5.9E-06 1.3E-10 50.7 3.7 33 38-70 2-34 (44)
40 PF12799 LRR_4: Leucine Rich r 98.1 5E-06 1.1E-10 51.0 3.4 40 13-53 1-40 (44)
41 KOG3207 Beta-tubulin folding c 97.8 1.8E-06 4E-11 77.1 -1.8 112 10-121 143-259 (505)
42 KOG1859 Leucine-rich repeat pr 97.8 2.7E-07 5.8E-12 87.0 -8.0 112 5-121 179-292 (1096)
43 KOG0531 Protein phosphatase 1, 97.7 1E-05 2.2E-10 74.2 1.2 108 9-121 91-199 (414)
44 KOG1859 Leucine-rich repeat pr 97.7 5.4E-07 1.2E-11 85.0 -8.4 124 15-145 166-289 (1096)
45 KOG3665 ZYG-1-like serine/thre 97.6 3.6E-05 7.7E-10 74.7 3.0 110 11-121 146-263 (699)
46 KOG3207 Beta-tubulin folding c 97.6 2.4E-05 5.3E-10 70.1 1.2 61 10-70 169-232 (505)
47 KOG4579 Leucine-rich repeat (L 97.5 3.3E-06 7.1E-11 64.4 -4.4 104 14-120 28-135 (177)
48 KOG4579 Leucine-rich repeat (L 97.5 4.6E-06 1E-10 63.6 -3.7 118 10-130 50-169 (177)
49 KOG0531 Protein phosphatase 1, 97.4 4.2E-05 9E-10 70.3 0.9 105 12-121 71-175 (414)
50 KOG2120 SCF ubiquitin ligase, 97.3 8.7E-06 1.9E-10 69.7 -4.4 146 37-183 185-334 (419)
51 KOG1909 Ran GTPase-activating 97.3 2.9E-05 6.2E-10 67.7 -1.4 136 8-145 87-251 (382)
52 KOG1644 U2-associated snRNP A' 97.2 0.00064 1.4E-08 55.3 5.4 108 36-146 41-151 (233)
53 KOG3665 ZYG-1-like serine/thre 97.2 0.00013 2.8E-09 70.8 1.5 130 13-145 122-260 (699)
54 KOG2739 Leucine-rich acidic nu 97.1 0.00013 2.9E-09 61.3 0.6 116 29-147 35-155 (260)
55 KOG2120 SCF ubiquitin ligase, 96.9 7.1E-05 1.5E-09 64.3 -3.3 13 106-118 311-323 (419)
56 KOG1909 Ran GTPase-activating 96.7 0.0008 1.7E-08 58.9 2.1 134 11-146 155-309 (382)
57 PF00560 LRR_1: Leucine Rich R 96.6 0.0011 2.4E-08 34.0 1.2 21 38-58 1-21 (22)
58 KOG1644 U2-associated snRNP A' 96.5 0.0032 7E-08 51.3 4.0 104 12-118 41-150 (233)
59 KOG2739 Leucine-rich acidic nu 96.5 0.0014 3.1E-08 55.2 2.0 88 58-149 41-130 (260)
60 KOG2982 Uncharacterized conser 96.3 0.0013 2.9E-08 56.7 0.7 88 34-121 68-159 (418)
61 KOG2123 Uncharacterized conser 96.2 0.00016 3.5E-09 61.6 -5.3 99 12-114 18-123 (388)
62 PF13306 LRR_5: Leucine rich r 96.1 0.027 5.9E-07 42.3 7.1 100 8-115 7-110 (129)
63 KOG2982 Uncharacterized conser 95.8 0.013 2.9E-07 50.7 4.4 61 10-70 94-156 (418)
64 COG5238 RNA1 Ran GTPase-activa 95.3 0.0063 1.4E-07 52.0 0.9 135 9-145 88-252 (388)
65 KOG2123 Uncharacterized conser 94.9 0.0017 3.6E-08 55.5 -3.8 79 10-90 38-123 (388)
66 PF13504 LRR_7: Leucine rich r 94.9 0.018 3.8E-07 27.5 1.3 14 39-52 3-16 (17)
67 PF13306 LRR_5: Leucine rich r 94.2 0.19 4E-06 37.6 6.4 84 4-93 25-112 (129)
68 PF00560 LRR_1: Leucine Rich R 93.8 0.031 6.8E-07 28.5 1.0 19 62-81 2-20 (22)
69 smart00370 LRR Leucine-rich re 92.3 0.1 2.2E-06 27.6 1.6 20 36-55 1-20 (26)
70 smart00369 LRR_TYP Leucine-ric 92.3 0.1 2.2E-06 27.6 1.6 20 36-55 1-20 (26)
71 KOG0473 Leucine-rich repeat pr 92.0 0.0021 4.6E-08 53.6 -7.8 82 37-120 42-123 (326)
72 KOG4341 F-box protein containi 91.5 0.11 2.5E-06 46.9 2.0 138 11-150 292-441 (483)
73 KOG1947 Leucine rich repeat pr 90.7 0.024 5.1E-07 52.5 -3.3 109 12-120 187-307 (482)
74 KOG3864 Uncharacterized conser 90.6 0.053 1.2E-06 44.3 -0.9 78 38-115 102-183 (221)
75 KOG1947 Leucine rich repeat pr 89.9 0.053 1.1E-06 50.2 -1.6 163 9-176 210-390 (482)
76 COG5238 RNA1 Ran GTPase-activa 88.8 0.36 7.8E-06 41.6 2.7 110 11-121 28-170 (388)
77 KOG4341 F-box protein containi 86.8 0.25 5.4E-06 44.8 0.7 164 13-178 268-442 (483)
78 KOG0473 Leucine-rich repeat pr 84.9 0.017 3.8E-07 48.3 -7.0 88 8-97 37-124 (326)
79 smart00364 LRR_BAC Leucine-ric 80.9 0.99 2.1E-05 24.0 1.1 17 38-54 3-19 (26)
80 smart00365 LRR_SD22 Leucine-ri 79.2 1.7 3.6E-05 23.1 1.7 16 37-52 2-17 (26)
81 KOG3864 Uncharacterized conser 75.2 1.2 2.6E-05 36.6 0.7 66 85-152 102-168 (221)
82 PF13516 LRR_6: Leucine Rich r 72.1 2.3 5E-05 21.7 1.1 14 37-50 2-15 (24)
83 smart00367 LRR_CC Leucine-rich 67.4 4.5 9.8E-05 21.1 1.6 15 13-27 2-16 (26)
84 smart00368 LRR_RI Leucine rich 58.8 7.4 0.00016 20.8 1.5 13 38-50 3-15 (28)
85 KOG4308 LRR-containing protein 45.5 0.41 8.9E-06 44.8 -8.1 15 35-49 170-184 (478)
86 TIGR00864 PCC polycystin catio 32.3 28 0.0006 39.5 1.9 15 80-94 15-29 (2740)
87 KOG3763 mRNA export factor TAP 32.2 20 0.00044 34.0 0.8 18 231-248 440-457 (585)
88 KOG3763 mRNA export factor TAP 32.0 23 0.00049 33.7 1.1 36 35-70 216-254 (585)
89 TIGR00864 PCC polycystin catio 21.6 54 0.0012 37.4 1.7 31 19-50 1-32 (2740)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=9.2e-22 Score=199.65 Aligned_cols=172 Identities=22% Similarity=0.406 Sum_probs=103.0
Q ss_pred CCcEEecCCCCCCCcccccCCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccC----cccc-------c
Q 044234 61 GLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEEC----KMLQ-------N 129 (276)
Q Consensus 61 ~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~----~~L~-------~ 129 (276)
+|+.|++++|.....+|..++++++|+.|++++|+.++.+|..+ .+++|+.|++++|.....+ .+++ .
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG 857 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCC
Confidence 45566666666666677777777778888887777777777654 5566666666543211000 0000 0
Q ss_pred CCCCC------CCccEEeccCCCCCccccchhhhcccCCCCc-cee----------------------------------
Q 044234 130 LPRLP------ASIHWILLNGCVSLEILSDVLKLNEHRLPSL-SLY---------------------------------- 168 (276)
Q Consensus 130 L~~L~------~~L~~L~~~~c~~L~~~~~~~~~~~~~~~~l-~l~---------------------------------- 168 (276)
+.++| ++|+.|++.+|.+|+.++.. ...+..+ .++
T Consensus 858 i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~----~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~ 933 (1153)
T PLN03210 858 IEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN----ISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTV 933 (1153)
T ss_pred CccChHHHhcCCCCCEEECCCCCCcCccCcc----cccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchh
Confidence 00111 24455555555555555441 1222222 233
Q ss_pred ---ecCCCcchhhHHHHHHHHHHHHhccCCCccceEEecCCCCCCcccccCCCCCceEE-EEcCCCCCCCCCeeEEEEEE
Q 044234 169 ---CVDCSKLTGNYALALSLLEEYIKNSEGRWRHFSIAVPGSEIPEWFEYQNNEGSSIT-ISTPPKTYKNSKLVGYAMCC 244 (276)
Q Consensus 169 ---~~~c~~L~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pg~~iP~Wf~~~~~~g~~i~-~~l~~~~~~~~~~~g~~~c~ 244 (276)
|.||.+|+.... .+.. .....+++||.++|+||.||+ .|++++ |++|+.|. ...|.||++|+
T Consensus 934 ~l~f~nC~~L~~~a~----------l~~~--~~~~~~~l~g~evp~~f~hr~-~g~sl~~i~l~~~~~-~~~~~~f~~c~ 999 (1153)
T PLN03210 934 CINFINCFNLDQEAL----------LQQQ--SIFKQLILSGEEVPSYFTHRT-TGASLTNIPLLHISP-CQPFFRFRACA 999 (1153)
T ss_pred ccccccccCCCchhh----------hccc--ccceEEECCCccCchhccCCc-ccceeeeeccCCccc-CCCccceEEEE
Confidence 444544433221 0111 112357899999999999999 999998 99999888 77899999999
Q ss_pred EEecCCC
Q 044234 245 VFHVPKY 251 (276)
Q Consensus 245 v~~~~~~ 251 (276)
|+++...
T Consensus 1000 v~~~~~~ 1006 (1153)
T PLN03210 1000 VVDSESF 1006 (1153)
T ss_pred EEecCcc
Confidence 9987654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.47 E-value=1.4e-13 Score=138.56 Aligned_cols=117 Identities=21% Similarity=0.353 Sum_probs=59.1
Q ss_pred cCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCce-ecCccccCCCCCcEEecCCCCCCCcccccCCCC
Q 044234 5 LPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIR-ELPVSIELLSGLVLLNLKDCRNLSTLPITVSSL 83 (276)
Q Consensus 5 LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l 83 (276)
+|..++++++|++|++++|...+.+|..++++++|++|++++|.+. .+|..++.+++|+.|++++|...+.+|..++++
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 235 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence 3444444555555555555444444555555555555555555444 234445555555555555554444455555555
Q ss_pred CCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCcccc
Q 044234 84 KCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 84 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
++|++|++++|...+.+|..++.+++|++|++++|.+.
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 55555555555444455555555555555555555443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.45 E-value=3.1e-13 Score=136.12 Aligned_cols=119 Identities=26% Similarity=0.343 Sum_probs=99.0
Q ss_pred ccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCce-ecCccccCCCCCcEEecCCCCCCCcccccCCC
Q 044234 4 SLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIR-ELPVSIELLSGLVLLNLKDCRNLSTLPITVSS 82 (276)
Q Consensus 4 ~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~ 82 (276)
.+|..+.++++|++|++++|...+.+|..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|..+++
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 258 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC
Confidence 46777888889999999988777788888888888999999888877 56777888888888888888777788888888
Q ss_pred CCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccc
Q 044234 83 LKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITE 122 (276)
Q Consensus 83 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~ 122 (276)
+++|+.|++++|...+.+|..+..+++|+.|++++|.+.+
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 8888888888887777788878888888888888887753
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.41 E-value=1.8e-12 Score=132.22 Aligned_cols=113 Identities=35% Similarity=0.609 Sum_probs=60.4
Q ss_pred CccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCC-CceecCccccCCCCCcEEecCCCCCCCcccccCC
Q 044234 3 KSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGT-AIRELPVSIELLSGLVLLNLKDCRNLSTLPITVS 81 (276)
Q Consensus 3 ~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n-~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 81 (276)
+.+|..+..+++|+.|++++|..++.+|+ +..+++|++|++++| .+.++|.+++++++|+.|++++|..++.+|..+
T Consensus 624 ~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i- 701 (1153)
T PLN03210 624 EKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI- 701 (1153)
T ss_pred cccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence 33444445555555555555544555543 344555555555554 344555555556666666666655555555544
Q ss_pred CCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccc
Q 044234 82 SLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSI 120 (276)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i 120 (276)
++++|+.|++++|..++.+|.. ..+|+.|++++|.+
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i 737 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI 737 (1153)
T ss_pred CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc
Confidence 4555666666655555544432 23455555555554
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=3.8e-15 Score=116.73 Aligned_cols=107 Identities=28% Similarity=0.406 Sum_probs=53.1
Q ss_pred CCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEee
Q 044234 12 LKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKL 91 (276)
Q Consensus 12 l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l 91 (276)
+.+++.|-+++| .+...|..+..+.+|+.|++.+|+|+++|.+++.+++|+.|+++-| .+..+|.+|+.++.|+.||+
T Consensus 32 ~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhc
Confidence 444455555554 4444555555555555555555555555555555555555555544 34445555555555555555
Q ss_pred eCCCCC-CcCccccCCCCCCCeeeccCccc
Q 044234 92 SGCSKI-VKFPESVISMEDLSELFLDRTSI 120 (276)
Q Consensus 92 ~~~~~~-~~lp~~l~~l~~L~~L~L~~n~i 120 (276)
.+|+.. ..+|..|..+..|+.|++++|.+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndf 139 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDF 139 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCc
Confidence 554332 23344344444444444444433
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.33 E-value=6.7e-14 Score=109.80 Aligned_cols=144 Identities=25% Similarity=0.342 Sum_probs=120.7
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCC-CcccccC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNL-STLPITV 80 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l-~~lp~~~ 80 (276)
|..+|+++..+++|++|++++| .++++|..+..+++|+.|+++-|++..+|..|+.++.|+.||+.+|+.. ..+|..|
T Consensus 45 l~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnf 123 (264)
T KOG0617|consen 45 LTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNF 123 (264)
T ss_pred eeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcch
Confidence 5678999999999999999998 7999999999999999999999999999999999999999999988654 4689999
Q ss_pred CCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCcccc
Q 044234 81 SSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILS 152 (276)
Q Consensus 81 ~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~ 152 (276)
..|+.|+.|.+++| ....+|.+++.+++|+.|.+..|.+-...+.+..+ ..+++|++.|. .|.-++
T Consensus 124 f~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~lpkeig~l----t~lrelhiqgn-rl~vlp 189 (264)
T KOG0617|consen 124 FYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDL----TRLRELHIQGN-RLTVLP 189 (264)
T ss_pred hHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhhCcHHHHHH----HHHHHHhcccc-eeeecC
Confidence 99999999999994 67889999999999999999999876544444433 23455666553 344333
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.19 E-value=9e-13 Score=121.25 Aligned_cols=150 Identities=23% Similarity=0.332 Sum_probs=115.9
Q ss_pred CccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCC
Q 044234 3 KSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSS 82 (276)
Q Consensus 3 ~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~ 82 (276)
..+|.++..+.+|+.+|++.| .+..+|+.+-++.+|+.|+|++|.|+++.-..+.+.+|++|+++.| .++.+|+.+++
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcK 289 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN-QLTVLPDAVCK 289 (1255)
T ss_pred hcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc-hhccchHHHhh
Confidence 357888888899999999988 6888999999999999999999999998888888899999999988 57788888888
Q ss_pred CCCCCEEeeeCCCC-CCcCccccCCCCCCCeeeccCcccc------ccCcccccC----------C---CCCCCccEEec
Q 044234 83 LKCLRTLKLSGCSK-IVKFPESVISMEDLSELFLDRTSIT------EECKMLQNL----------P---RLPASIHWILL 142 (276)
Q Consensus 83 l~~L~~L~l~~~~~-~~~lp~~l~~l~~L~~L~L~~n~i~------~~~~~L~~L----------~---~L~~~L~~L~~ 142 (276)
+++|+.|.+.+|.. ...+|+.++.+..|+.+..++|.+. +.|.+|+.+ | .+-+.|+.||+
T Consensus 290 L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeec
Confidence 88888888877654 3467777777777777777777665 334333332 2 12357789999
Q ss_pred cCCCCCccccch
Q 044234 143 NGCVSLEILSDV 154 (276)
Q Consensus 143 ~~c~~L~~~~~~ 154 (276)
++.+.|.--|.+
T Consensus 370 reNpnLVMPPKP 381 (1255)
T KOG0444|consen 370 RENPNLVMPPKP 381 (1255)
T ss_pred cCCcCccCCCCc
Confidence 999888755543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.16 E-value=3.7e-12 Score=117.30 Aligned_cols=89 Identities=34% Similarity=0.465 Sum_probs=71.6
Q ss_pred cCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccccCCCC
Q 044234 5 LPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPITVSSL 83 (276)
Q Consensus 5 LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~~~l 83 (276)
+|+.+..++.|.+|||++| .+++.|..+...+++.+|+|++|.|+.+|.+ +-+++-|-+|||++| .+..+|+.+..+
T Consensus 95 iP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRL 172 (1255)
T ss_pred CCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHH
Confidence 6777888999999999998 7888999888888999999999999988877 677888888888877 566677666666
Q ss_pred CCCCEEeeeCCC
Q 044234 84 KCLRTLKLSGCS 95 (276)
Q Consensus 84 ~~L~~L~l~~~~ 95 (276)
..|++|++++|.
T Consensus 173 ~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 173 SMLQTLKLSNNP 184 (1255)
T ss_pred hhhhhhhcCCCh
Confidence 666666666653
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.12 E-value=5.7e-12 Score=115.10 Aligned_cols=113 Identities=21% Similarity=0.135 Sum_probs=83.0
Q ss_pred cCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCCcccccCCCCCCCC
Q 044234 9 ISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLR 87 (276)
Q Consensus 9 l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~ 87 (276)
|..+.++++|+|+.|+....-..++-+++.|+.|++++|.|..+ ++++...++|++|+|++|.....-+..+..+..|+
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE 344 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence 55678888888888865555566677888888999999888877 56688888899999988866555556677777788
Q ss_pred EEeeeCCCCCCcCccccCCCCCCCeeeccCcccc
Q 044234 88 TLKLSGCSKIVKFPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 88 ~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
.|+|+.|.....--..|..+++|++|||+.|.+.
T Consensus 345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELS 378 (873)
T ss_pred hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEE
Confidence 8888875433222234567777777777777765
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.11 E-value=1.9e-12 Score=113.52 Aligned_cols=107 Identities=26% Similarity=0.362 Sum_probs=52.2
Q ss_pred CCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCC-CCCCCCEEe
Q 044234 12 LKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVS-SLKCLRTLK 90 (276)
Q Consensus 12 l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~-~l~~L~~L~ 90 (276)
++.|+.||...| .++.+|..++.|.+|+.|++..|+|..+| +|+.+..|.+|+++.| ....+|...+ ++.++.+||
T Consensus 182 m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 182 MKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeee
Confidence 444444444444 44445555555555555555555555554 3444444444444443 2333443333 455555555
Q ss_pred eeCCCCCCcCccccCCCCCCCeeeccCccccc
Q 044234 91 LSGCSKIVKFPESVISMEDLSELFLDRTSITE 122 (276)
Q Consensus 91 l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~ 122 (276)
+.+ +.+.++|+.+..+.+|++||+++|.|++
T Consensus 259 LRd-Nklke~Pde~clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 259 LRD-NKLKEVPDEICLLRSLERLDLSNNDISS 289 (565)
T ss_pred ccc-cccccCchHHHHhhhhhhhcccCCcccc
Confidence 555 2345555555555555555555555543
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.10 E-value=7.3e-11 Score=108.00 Aligned_cols=119 Identities=25% Similarity=0.196 Sum_probs=72.6
Q ss_pred CccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccccCC
Q 044234 3 KSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPITVS 81 (276)
Q Consensus 3 ~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~~ 81 (276)
+.+|...+...+|+.|+|.+|...+.-.+.+.-++.|+.|||+.|.|+++|.. +..=.++++|+|++|.+...--..|.
T Consensus 115 t~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~ 194 (873)
T KOG4194|consen 115 TRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFD 194 (873)
T ss_pred hhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccc
Confidence 34444333333455555555533333334444556666666666666666543 55556677777777765555555677
Q ss_pred CCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCcccc
Q 044234 82 SLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
++.+|..|.|+.|.+..--+..|.+++.|+.|+|.+|.|.
T Consensus 195 ~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 195 SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred ccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 7778888888885544333355667888888888888776
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.04 E-value=3.6e-11 Score=114.86 Aligned_cols=108 Identities=30% Similarity=0.434 Sum_probs=75.2
Q ss_pred cCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeCCCCCCcCccccCCCCCCC
Q 044234 33 TGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSGCSKIVKFPESVISMEDLS 111 (276)
Q Consensus 33 ~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~ 111 (276)
+.++++|+.|+|++|.+..+|++ +.++..|+.|+|+|| .++.+|..+..+..|++|...+| .+..+| .+..++.|+
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN-~l~~fP-e~~~l~qL~ 455 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSN-QLLSFP-ELAQLPQLK 455 (1081)
T ss_pred hccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCC-ceeech-hhhhcCcce
Confidence 34557777777777777777776 777777777778777 56677777777777777776663 456677 577788888
Q ss_pred eeeccCccccccCcccccCCCCC-CCccEEeccCCCC
Q 044234 112 ELFLDRTSITEECKMLQNLPRLP-ASIHWILLNGCVS 147 (276)
Q Consensus 112 ~L~L~~n~i~~~~~~L~~L~~L~-~~L~~L~~~~c~~ 147 (276)
.+|++.|.++... -...+| +.|++||++|...
T Consensus 456 ~lDlS~N~L~~~~----l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 456 VLDLSCNNLSEVT----LPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred EEecccchhhhhh----hhhhCCCcccceeeccCCcc
Confidence 8888887775211 112345 6788888887653
No 13
>PLN03150 hypothetical protein; Provisional
Probab=99.02 E-value=6.4e-10 Score=106.77 Aligned_cols=105 Identities=22% Similarity=0.352 Sum_probs=63.1
Q ss_pred CCEEeecCCCCCCccccccCCCCCCcEEEccCCCce-ecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeC
Q 044234 15 LSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIR-ELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSG 93 (276)
Q Consensus 15 L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~ 93 (276)
++.|+|++|...+.+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|+|++|...+.+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 455666666555556666666666666666666665 4555566666666666666666666666666666666666666
Q ss_pred CCCCCcCccccCCC-CCCCeeeccCcc
Q 044234 94 CSKIVKFPESVISM-EDLSELFLDRTS 119 (276)
Q Consensus 94 ~~~~~~lp~~l~~l-~~L~~L~L~~n~ 119 (276)
|...+.+|..++.+ .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 66666666555432 244455555554
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.99 E-value=5.7e-11 Score=104.38 Aligned_cols=115 Identities=25% Similarity=0.379 Sum_probs=91.1
Q ss_pred ccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCccc-ccCCC
Q 044234 4 SLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLP-ITVSS 82 (276)
Q Consensus 4 ~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~~~~ 82 (276)
.+|..++.+++|..|++++| .+-.+|..++.+..|+.|+++.|++..+|.-+..+..++.+-.++| .++.++ +.+.+
T Consensus 426 fv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~n-qi~~vd~~~l~n 503 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNN-QIGSVDPSGLKN 503 (565)
T ss_pred cchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccc-cccccChHHhhh
Confidence 34556677888888888887 7788888888888888888888888888876666666666655555 445554 44889
Q ss_pred CCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCcccc
Q 044234 83 LKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 83 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
|.+|.+||+.+ +.+..+|..++++.+|++|++.+|+|.
T Consensus 504 m~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 504 MRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhcceeccCC-CchhhCChhhccccceeEEEecCCccC
Confidence 99999999988 567788889999999999999999986
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=1.5e-10 Score=92.96 Aligned_cols=133 Identities=23% Similarity=0.283 Sum_probs=47.1
Q ss_pred cCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccC-CCCCCCC
Q 044234 9 ISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITV-SSLKCLR 87 (276)
Q Consensus 9 l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~-~~l~~L~ 87 (276)
+.+...+++|+|++| .+..+...-..+.+|+.|++++|.|+.+. .+..+++|+.|++++|.. ..+.+.+ ..+++|+
T Consensus 15 ~~n~~~~~~L~L~~n-~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I-~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGN-QISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRI-SSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred ccccccccccccccc-ccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCC-CccccchHHhCCcCC
Confidence 445667899999998 45555432225788999999999999885 578889999999998854 4444333 3578899
Q ss_pred EEeeeCCCCCCcCc--cccCCCCCCCeeeccCccccccCcc-cccCCCCCCCccEEeccCCC
Q 044234 88 TLKLSGCSKIVKFP--ESVISMEDLSELFLDRTSITEECKM-LQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 88 ~L~l~~~~~~~~lp--~~l~~l~~L~~L~L~~n~i~~~~~~-L~~L~~L~~~L~~L~~~~c~ 146 (276)
+|++++|.+ ..+- ..+..+++|+.|++.+|+++....- ..-+..+ ++|+.||-....
T Consensus 92 ~L~L~~N~I-~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l-P~Lk~LD~~~V~ 151 (175)
T PF14580_consen 92 ELYLSNNKI-SDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL-PSLKVLDGQDVT 151 (175)
T ss_dssp EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH--TT-SEETTEETT
T ss_pred EEECcCCcC-CChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHc-ChhheeCCEEcc
Confidence 999988654 2222 3466788899999999988633211 0001112 456666655543
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.92 E-value=6.1e-09 Score=101.10 Aligned_cols=134 Identities=24% Similarity=0.391 Sum_probs=79.5
Q ss_pred CCCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccC
Q 044234 1 NLKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITV 80 (276)
Q Consensus 1 ~L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~ 80 (276)
+|+++|+.+. ++|+.|++++| .++.+|.. +++|++|++++|.++.+|.. .++|+.|++++|. +..+|..
T Consensus 212 ~LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~l- 280 (788)
T PRK15387 212 GLTTLPDCLP--AHITTLVIPDN-NLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP-LTHLPAL- 280 (788)
T ss_pred CCCcCCcchh--cCCCEEEccCC-cCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCc-hhhhhhc-
Confidence 3567787664 47888888887 56667753 57888888888888888753 3466777777663 3444432
Q ss_pred CCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccC-------------cccccCCCCCCCccEEeccCCCC
Q 044234 81 SSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEEC-------------KMLQNLPRLPASIHWILLNGCVS 147 (276)
Q Consensus 81 ~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~-------------~~L~~L~~L~~~L~~L~~~~c~~ 147 (276)
+.+|+.|++++|. +..+|.. +++|+.|++++|.++... ..+..+|.+|.+|+.|+++++ .
T Consensus 281 --p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N-~ 353 (788)
T PRK15387 281 --PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDN-Q 353 (788)
T ss_pred --hhhcCEEECcCCc-ccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCC-c
Confidence 2345555665543 3344431 245566666665554210 123344555566777777664 4
Q ss_pred Ccccc
Q 044234 148 LEILS 152 (276)
Q Consensus 148 L~~~~ 152 (276)
++.++
T Consensus 354 Ls~LP 358 (788)
T PRK15387 354 LASLP 358 (788)
T ss_pred cCCCC
Confidence 55444
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.91 E-value=7e-09 Score=100.87 Aligned_cols=106 Identities=24% Similarity=0.403 Sum_probs=49.5
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVS 81 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 81 (276)
|+.+|..+. ++|+.|++++| .++.+|..+. .+|++|++++|.++.+|..+. .+|+.|++++|. +..+|..+.
T Consensus 190 LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~ 261 (754)
T PRK15370 190 LTTIPACIP--EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR-ITELPERLP 261 (754)
T ss_pred cCcCCcccc--cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc-cCcCChhHh
Confidence 445555442 45666666666 4445554432 356666666666555554432 245555555543 224443332
Q ss_pred CCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccc
Q 044234 82 SLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSI 120 (276)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i 120 (276)
.+|+.|++++|. +..+|..+. .+|+.|++++|.+
T Consensus 262 --s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~L 295 (754)
T PRK15370 262 --SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSI 295 (754)
T ss_pred --CCCCEEECcCCc-cCccccccC--CCCcEEECCCCcc
Confidence 244444444432 223443322 2344444444443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.85 E-value=1.5e-08 Score=98.60 Aligned_cols=138 Identities=26% Similarity=0.405 Sum_probs=95.7
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVS 81 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 81 (276)
|+.+|..+. ++|++|++++| .++.+|..+. .+|+.|++++|.++.+|..+. .+|+.|++++| .+..+|..+.
T Consensus 211 LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~ 282 (754)
T PRK15370 211 LKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHN-KISCLPENLP 282 (754)
T ss_pred CCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCC-ccCccccccC
Confidence 567787653 68999999998 5677887654 479999999999999988764 58999999987 4557887664
Q ss_pred CCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccC----cc----------cccCC-CCCCCccEEeccCCC
Q 044234 82 SLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEEC----KM----------LQNLP-RLPASIHWILLNGCV 146 (276)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~----~~----------L~~L~-~L~~~L~~L~~~~c~ 146 (276)
.+|+.|++++|+ +..+|..+. ++|+.|++++|.++... .+ +..+| .+|++|+.|++++|
T Consensus 283 --~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N- 356 (754)
T PRK15370 283 --EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKN- 356 (754)
T ss_pred --CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCccccCCccccccceeccccCCccccCChhhcCcccEEECCCC-
Confidence 589999999975 445665432 35666677666654211 11 11222 24567777777776
Q ss_pred CCccccc
Q 044234 147 SLEILSD 153 (276)
Q Consensus 147 ~L~~~~~ 153 (276)
.+..++.
T Consensus 357 ~L~~LP~ 363 (754)
T PRK15370 357 QITVLPE 363 (754)
T ss_pred CCCcCCh
Confidence 3555554
No 19
>PLN03150 hypothetical protein; Provisional
Probab=98.82 E-value=7.9e-09 Score=99.30 Aligned_cols=111 Identities=23% Similarity=0.202 Sum_probs=91.9
Q ss_pred CCcEEEccCCCce-ecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeecc
Q 044234 38 HLSNLHLEGTAIR-ELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLD 116 (276)
Q Consensus 38 ~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~ 116 (276)
.++.|+|++|.++ .+|..++.+++|+.|+|++|...+.+|..++.+++|+.|++++|...+.+|+.++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3788999999988 678889999999999999999889999999999999999999999999999999999999999999
Q ss_pred CccccccCcccccCCCCCCCccEEeccCCCCCcc
Q 044234 117 RTSITEECKMLQNLPRLPASIHWILLNGCVSLEI 150 (276)
Q Consensus 117 ~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~ 150 (276)
+|.+.+..+. .+..+...+..+++.++..+..
T Consensus 499 ~N~l~g~iP~--~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 499 GNSLSGRVPA--ALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCcccccCCh--HHhhccccCceEEecCCccccC
Confidence 9998855432 1222233455677776655543
No 20
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=1.2e-08 Score=67.49 Aligned_cols=57 Identities=33% Similarity=0.396 Sum_probs=29.9
Q ss_pred CCcEEEccCCCceecCc-cccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeCC
Q 044234 38 HLSNLHLEGTAIRELPV-SIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSGC 94 (276)
Q Consensus 38 ~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~ 94 (276)
+|++|++++|.++.+|. .|.++++|++|++++|.....-|..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555555555543 2555555555555555443333344555555555555554
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.74 E-value=1.1e-09 Score=96.45 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=8.4
Q ss_pred cCCCCCCcEEEccCCCce
Q 044234 33 TGRMEHLSNLHLEGTAIR 50 (276)
Q Consensus 33 ~~~l~~L~~L~L~~n~i~ 50 (276)
+..+++|++|++++|.+.
T Consensus 77 l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 77 LTKGCGLQELDLSDNALG 94 (319)
T ss_pred HHhcCceeEEEccCCCCC
Confidence 333445555555544443
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.72 E-value=1.2e-08 Score=82.12 Aligned_cols=114 Identities=25% Similarity=0.422 Sum_probs=40.3
Q ss_pred CCccccccCCCCCCcEEEccCCCceecCcccc-CCCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeCCCCCCcCcccc
Q 044234 26 FREFPEITGRMEHLSNLHLEGTAIRELPVSIE-LLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSGCSKIVKFPESV 104 (276)
Q Consensus 26 l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~-~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l 104 (276)
++..+.. .+..++++|++++|.|+.+. .++ .+.+|+.|++++|. +..+. .+..++.|+.|++++|. +..+.+.+
T Consensus 9 i~~~~~~-~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l 83 (175)
T PF14580_consen 9 IEQIAQY-NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNR-ISSISEGL 83 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHH
T ss_pred ccccccc-cccccccccccccccccccc-chhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCC-CCccccch
Confidence 3334433 34567899999999999884 465 58899999999995 44554 57789999999999965 45565444
Q ss_pred -CCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCC
Q 044234 105 -ISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 105 -~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~ 146 (276)
..+++|+.|++++|.|. .+..+..+..+ ++|+.|++.+++
T Consensus 84 ~~~lp~L~~L~L~~N~I~-~l~~l~~L~~l-~~L~~L~L~~NP 124 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKIS-DLNELEPLSSL-PKLRVLSLEGNP 124 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG--TT--EEE-TT-G
T ss_pred HHhCCcCCEEECcCCcCC-ChHHhHHHHcC-CCcceeeccCCc
Confidence 46899999999999995 45556666555 578999998875
No 23
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=1.4e-09 Score=92.58 Aligned_cols=128 Identities=25% Similarity=0.272 Sum_probs=95.4
Q ss_pred CCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEee
Q 044234 12 LKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKL 91 (276)
Q Consensus 12 l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l 91 (276)
.+.|+++||++| .++.+.+...-++.++.|++++|.|..+.. +..+++|+.|||++| .+..+...-..+-+.++|.+
T Consensus 283 Wq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred Hhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 456888999998 677788888888999999999999998854 888999999999998 44444444446778888999
Q ss_pred eCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCC
Q 044234 92 SGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 92 ~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~ 146 (276)
++| .+..+. .++.+-+|..||+++|+|. .....+.+..| +.|+.+.+.+.+
T Consensus 360 a~N-~iE~LS-GL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~L-PCLE~l~L~~NP 410 (490)
T KOG1259|consen 360 AQN-KIETLS-GLRKLYSLVNLDLSSNQIE-ELDEVNHIGNL-PCLETLRLTGNP 410 (490)
T ss_pred hhh-hHhhhh-hhHhhhhheeccccccchh-hHHHhcccccc-cHHHHHhhcCCC
Confidence 885 444443 3677788899999999984 44445555555 356667666654
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.71 E-value=7.1e-08 Score=93.81 Aligned_cols=45 Identities=31% Similarity=0.482 Sum_probs=28.0
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELP 53 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp 53 (276)
|+.+|.. +++|++|++++| .++.+|.. .++|+.|++++|.++.+|
T Consensus 234 Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~L~~Lp 278 (788)
T PRK15387 234 LTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNPLTHLP 278 (788)
T ss_pred CCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccCCchhhhh
Confidence 5566652 578999999998 56666643 235555555555555444
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.71 E-value=1.9e-09 Score=103.30 Aligned_cols=107 Identities=27% Similarity=0.419 Sum_probs=90.5
Q ss_pred cCCCCCCCEEeecCCCCCCcccc-ccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCC
Q 044234 9 ISGLKSLSTLNLSGTSKFREFPE-ITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLR 87 (276)
Q Consensus 9 l~~l~~L~~L~Ls~~~~l~~~p~-~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~ 87 (276)
+.++++|++|+|++| .+..+|+ .+.+++.|++|+++||+++.+|.++..+..|++|...+| .+..+| .+..+++|+
T Consensus 379 l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fP-e~~~l~qL~ 455 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFP-ELAQLPQLK 455 (1081)
T ss_pred hccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeech-hhhhcCcce
Confidence 667899999999999 6777775 467899999999999999999999999999999999887 677788 788999999
Q ss_pred EEeeeCCCCCC-cCccccCCCCCCCeeeccCcc
Q 044234 88 TLKLSGCSKIV-KFPESVISMEDLSELFLDRTS 119 (276)
Q Consensus 88 ~L~l~~~~~~~-~lp~~l~~l~~L~~L~L~~n~ 119 (276)
.+|++.|+... .+|... .-++|++||++||.
T Consensus 456 ~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 456 VLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred EEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 99999976543 333322 22799999999997
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.70 E-value=4e-09 Score=104.10 Aligned_cols=86 Identities=34% Similarity=0.524 Sum_probs=78.0
Q ss_pred cCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCE
Q 044234 9 ISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRT 88 (276)
Q Consensus 9 l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~ 88 (276)
|..++.|++|||++|....++|+.++++-+|++|+++++.|+++|.+++++..|.+|++..+..+..+|.....|.+|++
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence 66699999999999999999999999999999999999999999999999999999999998877777777777999999
Q ss_pred EeeeCC
Q 044234 89 LKLSGC 94 (276)
Q Consensus 89 L~l~~~ 94 (276)
|.+..-
T Consensus 647 L~l~~s 652 (889)
T KOG4658|consen 647 LRLPRS 652 (889)
T ss_pred EEeecc
Confidence 998763
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.70 E-value=1.2e-09 Score=99.94 Aligned_cols=115 Identities=26% Similarity=0.433 Sum_probs=55.4
Q ss_pred CccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCC
Q 044234 3 KSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSS 82 (276)
Q Consensus 3 ~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~ 82 (276)
..+|..+.++..|++|+++.| .+..+|..+..++ |+.|-+++|+++.+|..++.+..|..||.+.| .+..+|..++.
T Consensus 111 r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~ 187 (722)
T KOG0532|consen 111 RTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGY 187 (722)
T ss_pred eecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhh-hhhhchHHhhh
Confidence 344555555555555555554 3444444444333 45555555555555555554455555555544 23333333333
Q ss_pred CCC----------------------CCEEeeeCCCCCCcCccccCCCCCCCeeeccCcccc
Q 044234 83 LKC----------------------LRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 83 l~~----------------------L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
+.+ |..||++. +.+..+|-.|.+|+.|++|-|.+|++.
T Consensus 188 l~slr~l~vrRn~l~~lp~El~~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 188 LTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHHHHHHHHhhhhhhhCCHHHhCCceeeeeccc-CceeecchhhhhhhhheeeeeccCCCC
Confidence 333 44444443 334455555555555555555555544
No 28
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.62 E-value=3.8e-08 Score=65.11 Aligned_cols=58 Identities=26% Similarity=0.471 Sum_probs=51.3
Q ss_pred CCCCEEeecCCCCCCccc-cccCCCCCCcEEEccCCCceecCc-cccCCCCCcEEecCCCC
Q 044234 13 KSLSTLNLSGTSKFREFP-EITGRMEHLSNLHLEGTAIRELPV-SIELLSGLVLLNLKDCR 71 (276)
Q Consensus 13 ~~L~~L~Ls~~~~l~~~p-~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~ 71 (276)
++|++|++++| .+..+| +.+..+++|++|++++|.++.+++ .|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 47899999999 566665 688999999999999999999965 59999999999999985
No 29
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.61 E-value=1.4e-07 Score=85.01 Aligned_cols=145 Identities=23% Similarity=0.368 Sum_probs=82.4
Q ss_pred CCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCC-CceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCE
Q 044234 10 SGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGT-AIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRT 88 (276)
Q Consensus 10 ~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n-~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~ 88 (276)
..+++++.|++++| .++.+|.. ..+|++|.++++ .++.+|..+. .+|+.|++++|..+..+|.. |+.
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~L---P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPVL---PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCCC---CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cce
Confidence 34678888888888 67777732 346888888874 5667776553 57888888888666666643 555
Q ss_pred EeeeCC--CCCCcCccccCCC------------------CCCCeeeccCccccccCcccccCCCCCCCccEEeccCC--C
Q 044234 89 LKLSGC--SKIVKFPESVISM------------------EDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGC--V 146 (276)
Q Consensus 89 L~l~~~--~~~~~lp~~l~~l------------------~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c--~ 146 (276)
|++..+ ..++.+|..+..| ++|++|++++ |..+..-+.+|.+|+.|++..+ .
T Consensus 117 L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~------c~~i~LP~~LP~SLk~L~ls~n~~~ 190 (426)
T PRK15386 117 LEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTG------CSNIILPEKLPESLQSITLHIEQKT 190 (426)
T ss_pred EEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecC------CCcccCcccccccCcEEEecccccc
Confidence 555442 2245555543322 2455566633 3222222246667777776543 2
Q ss_pred CCccccchhhhcccCCCCcceeecCCCcchhh
Q 044234 147 SLEILSDVLKLNEHRLPSLSLYCVDCSKLTGN 178 (276)
Q Consensus 147 ~L~~~~~~~~~~~~~~~~l~l~~~~c~~L~~~ 178 (276)
+++-... .-...+.+.|.+|.+++.+
T Consensus 191 sLeI~~~------sLP~nl~L~f~n~lkL~~~ 216 (426)
T PRK15386 191 TWNISFE------GFPDGLDIDLQNSVLLSPD 216 (426)
T ss_pred cccCccc------ccccccEechhhhcccCHH
Confidence 2221111 0112235677788777554
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.60 E-value=8.3e-09 Score=90.78 Aligned_cols=134 Identities=19% Similarity=0.143 Sum_probs=95.5
Q ss_pred CCCCEEeecCCCCCC----ccccccCCC-CCCcEEEccCCCce-----ecCccccCCCCCcEEecCCCCCCC----cccc
Q 044234 13 KSLSTLNLSGTSKFR----EFPEITGRM-EHLSNLHLEGTAIR-----ELPVSIELLSGLVLLNLKDCRNLS----TLPI 78 (276)
Q Consensus 13 ~~L~~L~Ls~~~~l~----~~p~~~~~l-~~L~~L~L~~n~i~-----~lp~~i~~l~~L~~L~L~~~~~l~----~lp~ 78 (276)
++|++|++++|.... .+...+..+ ++|+.|++++|.++ .++..+..+.+|+.|++++|...+ .++.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 459999999996442 233445666 89999999999888 344557778899999999986553 2344
Q ss_pred cCCCCCCCCEEeeeCCCCCC----cCccccCCCCCCCeeeccCccccc-cCccc-ccCCCCCCCccEEeccCCC
Q 044234 79 TVSSLKCLRTLKLSGCSKIV----KFPESVISMEDLSELFLDRTSITE-ECKML-QNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 79 ~~~~l~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~L~L~~n~i~~-~~~~L-~~L~~L~~~L~~L~~~~c~ 146 (276)
.+..+++|++|++++|.... .+...+..+++|++|++++|.+++ ....+ ..++.-...|+.|++.+|.
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 45566899999999986542 244456778899999999998864 11111 1122223688999999984
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.55 E-value=3e-08 Score=97.97 Aligned_cols=109 Identities=30% Similarity=0.404 Sum_probs=90.2
Q ss_pred CCCCCEEeecCCCC-CCcc-ccccCCCCCCcEEEccCC-CceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCE
Q 044234 12 LKSLSTLNLSGTSK-FREF-PEITGRMEHLSNLHLEGT-AIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRT 88 (276)
Q Consensus 12 l~~L~~L~Ls~~~~-l~~~-p~~~~~l~~L~~L~L~~n-~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~ 88 (276)
.+.|++|-+.+|.. +... .+.+..++.|++||+++| .+.++|++|+.+.+|++|++++. ....+|.+++++.+|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhhe
Confidence 45788888888752 3333 445778999999999987 68899999999999999999987 57789999999999999
Q ss_pred EeeeCCCCCCcCccccCCCCCCCeeeccCcccc
Q 044234 89 LKLSGCSKIVKFPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 89 L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
|++..+.....+|.....+.+|++|.+......
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~ 655 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALS 655 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccc
Confidence 999988777777777777999999998776533
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.44 E-value=5.1e-09 Score=92.03 Aligned_cols=90 Identities=22% Similarity=0.348 Sum_probs=47.7
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCcc-ccccCCCCCCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCCcccc-
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREF-PEITGRMEHLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLSTLPI- 78 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~-p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~- 78 (276)
|+.+|..+. ..-..++|..|. ++.+ +..|+.+++|++|||++|.|+.| |..|.++.+|..|.+.+++.++.+|.
T Consensus 58 L~eVP~~LP--~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 58 LTEVPANLP--PETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred cccCcccCC--CcceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 444554442 345556666663 3333 34556666666666666666666 44466666666666655445555553
Q ss_pred cCCCCCCCCEEeeeCC
Q 044234 79 TVSSLKCLRTLKLSGC 94 (276)
Q Consensus 79 ~~~~l~~L~~L~l~~~ 94 (276)
.|+++.+|+.|.+.-|
T Consensus 135 ~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNAN 150 (498)
T ss_pred HhhhHHHHHHHhcChh
Confidence 3344444444444433
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.41 E-value=1.9e-08 Score=88.57 Aligned_cols=122 Identities=24% Similarity=0.272 Sum_probs=74.8
Q ss_pred CCccCc-ccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccC-CCceecCcc-ccCCCCCcEEecCCCCCCCcccc
Q 044234 2 LKSLPR-NISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEG-TAIRELPVS-IELLSGLVLLNLKDCRNLSTLPI 78 (276)
Q Consensus 2 L~~LP~-~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~-n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~ 78 (276)
|+.+|+ .|..+++|+.|||++|.....-|+.+..+.+|..|-+.+ |+|+++|.. |+++..|+.|.+.-|+..-...+
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~ 158 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQD 158 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHH
Confidence 455654 466666777777777655555566666666666665555 667766665 66666666666666654444455
Q ss_pred cCCCCCCCCEEeeeCCCCCCcCcc-ccCCCCCCCeeeccCccccccC
Q 044234 79 TVSSLKCLRTLKLSGCSKIVKFPE-SVISMEDLSELFLDRTSITEEC 124 (276)
Q Consensus 79 ~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~L~~n~i~~~~ 124 (276)
.+..+++|..|.+-+| ....++. .+..+.+++.+.+..|++..+|
T Consensus 159 al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 159 ALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred HHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcccccc
Confidence 5666666666666663 3444443 5566666667777666655444
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.40 E-value=1.6e-07 Score=85.42 Aligned_cols=137 Identities=27% Similarity=0.370 Sum_probs=95.8
Q ss_pred CCccCcccCCCC-CCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccC
Q 044234 2 LKSLPRNISGLK-SLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITV 80 (276)
Q Consensus 2 L~~LP~~l~~l~-~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~ 80 (276)
+..+|+....++ +|+.|++++| .+..+|..++.+++|+.|++++|.++++|...+..+.|+.|++++| ....+|..+
T Consensus 128 i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~ 205 (394)
T COG4886 128 ITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEI 205 (394)
T ss_pred cccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCC-ccccCchhh
Confidence 455666666564 8999999988 6777777778889999999999999988887778888899999887 566777766
Q ss_pred CCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCC
Q 044234 81 SSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGC 145 (276)
Q Consensus 81 ~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c 145 (276)
..+..|+.|.+++|. ....+..+..+.++..+.+.+|++......+ ..+.+++.|++.++
T Consensus 206 ~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~----~~l~~l~~L~~s~n 265 (394)
T COG4886 206 ELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESI----GNLSNLETLDLSNN 265 (394)
T ss_pred hhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeeccchh----ccccccceeccccc
Confidence 666678888888854 3344455667777777777666664321111 12234566666554
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.38 E-value=1.5e-07 Score=85.60 Aligned_cols=109 Identities=33% Similarity=0.506 Sum_probs=82.6
Q ss_pred cCCCCCCCEEeecCCCCCCccccccCCCC-CCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCC
Q 044234 9 ISGLKSLSTLNLSGTSKFREFPEITGRME-HLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLR 87 (276)
Q Consensus 9 l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~-~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~ 87 (276)
+..++.++.|++.++ ....++...+.+. +|+.|++++|.+.++|..++.+++|+.|++++| .+..+|...+..+.|+
T Consensus 112 ~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence 344567888888887 5777777777674 888888888888888777888888888888887 5666676665778888
Q ss_pred EEeeeCCCCCCcCccccCCCCCCCeeeccCccc
Q 044234 88 TLKLSGCSKIVKFPESVISMEDLSELFLDRTSI 120 (276)
Q Consensus 88 ~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i 120 (276)
.|++++| .+..+|..+.....|++|.+++|.+
T Consensus 190 ~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~ 221 (394)
T COG4886 190 NLDLSGN-KISDLPPEIELLSALEELDLSNNSI 221 (394)
T ss_pred heeccCC-ccccCchhhhhhhhhhhhhhcCCcc
Confidence 8888884 5667777666666788888888843
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.35 E-value=6.8e-08 Score=88.62 Aligned_cols=112 Identities=23% Similarity=0.399 Sum_probs=76.4
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVS 81 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 81 (276)
++.+|+.++.+..|..||.+.| .+..+|..++.+.+|+.|++..|.+..+|..+..+ .|..||++.| .+..+|..|.
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScN-kis~iPv~fr 231 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCN-KISYLPVDFR 231 (722)
T ss_pred cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccC-ceeecchhhh
Confidence 4555655555556666666665 44555555566666666666666666677666644 4788899876 6788999999
Q ss_pred CCCCCCEEeeeCCCCCCcCccccC---CCCCCCeeeccC
Q 044234 82 SLKCLRTLKLSGCSKIVKFPESVI---SMEDLSELFLDR 117 (276)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~lp~~l~---~l~~L~~L~L~~ 117 (276)
+|+.|++|-|.+| -+.+-|..++ ...-.++|+...
T Consensus 232 ~m~~Lq~l~LenN-PLqSPPAqIC~kGkVHIFKyL~~qA 269 (722)
T KOG0532|consen 232 KMRHLQVLQLENN-PLQSPPAQICEKGKVHIFKYLSTQA 269 (722)
T ss_pred hhhhheeeeeccC-CCCCChHHHHhccceeeeeeecchh
Confidence 9999999999885 5677776653 334456677633
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.25 E-value=2.9e-06 Score=76.58 Aligned_cols=75 Identities=28% Similarity=0.502 Sum_probs=59.6
Q ss_pred CCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeCCCCCCcCccccCCCCCCCee
Q 044234 34 GRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSGCSKIVKFPESVISMEDLSEL 113 (276)
Q Consensus 34 ~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L 113 (276)
..+.++++|++++|.++.+|. --.+|+.|.+++|..+..+|..+ ..+|+.|++++|..+..+|.. |+.|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceE
Confidence 346899999999999999982 23479999999999999998765 468999999999777777753 5666
Q ss_pred eccCcc
Q 044234 114 FLDRTS 119 (276)
Q Consensus 114 ~L~~n~ 119 (276)
+++++.
T Consensus 118 ~L~~n~ 123 (426)
T PRK15386 118 EIKGSA 123 (426)
T ss_pred EeCCCC
Confidence 665543
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.19 E-value=1.7e-07 Score=80.07 Aligned_cols=115 Identities=20% Similarity=0.174 Sum_probs=89.7
Q ss_pred CccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCC
Q 044234 3 KSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSS 82 (276)
Q Consensus 3 ~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~ 82 (276)
+.+.+++.-++.++.|++++|+ +..+.. +..+.+|+.||+++|.++++...-..+.+.+.|.|++| .+..+. +++.
T Consensus 297 ~~iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~LS-GL~K 372 (490)
T KOG1259|consen 297 TQIDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETLS-GLRK 372 (490)
T ss_pred hhhhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhhh-hhHh
Confidence 3455556667899999999995 444433 77889999999999999988666667889999999998 344443 5778
Q ss_pred CCCCCEEeeeCCCCCCc-CccccCCCCCCCeeeccCcccc
Q 044234 83 LKCLRTLKLSGCSKIVK-FPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 83 l~~L~~L~l~~~~~~~~-lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
+.+|..||+++|++... --..+++++.|+.+.+.+|++.
T Consensus 373 LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 373 LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 89999999999764321 1245899999999999999986
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.05 E-value=5.9e-06 Score=50.69 Aligned_cols=33 Identities=33% Similarity=0.506 Sum_probs=18.9
Q ss_pred CCcEEEccCCCceecCccccCCCCCcEEecCCC
Q 044234 38 HLSNLHLEGTAIRELPVSIELLSGLVLLNLKDC 70 (276)
Q Consensus 38 ~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~ 70 (276)
+|++|++++|+|+++|+.+++|++|+.|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 455666666666666555666666666666665
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.05 E-value=5e-06 Score=50.98 Aligned_cols=40 Identities=25% Similarity=0.507 Sum_probs=28.6
Q ss_pred CCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecC
Q 044234 13 KSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELP 53 (276)
Q Consensus 13 ~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp 53 (276)
++|++|++++| .++.+|..++++++|++|++++|.|++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 46788888887 56667776778888888888888777664
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=1.8e-06 Score=77.08 Aligned_cols=112 Identities=23% Similarity=0.227 Sum_probs=59.8
Q ss_pred CCCCCCCEEeecCCCCCCc--cccccCCCCCCcEEEccCCCceecCcc--ccCCCCCcEEecCCCCCCCc-ccccCCCCC
Q 044234 10 SGLKSLSTLNLSGTSKFRE--FPEITGRMEHLSNLHLEGTAIRELPVS--IELLSGLVLLNLKDCRNLST-LPITVSSLK 84 (276)
Q Consensus 10 ~~l~~L~~L~Ls~~~~l~~--~p~~~~~l~~L~~L~L~~n~i~~lp~~--i~~l~~L~~L~L~~~~~l~~-lp~~~~~l~ 84 (276)
..|++++.|||++|-.... +-.....+++|+.|+++.|.+...-++ -..+++|+.|.++.|..... +-..+..++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 3467777777777633222 234456677777777777766533222 22456677777777644321 111223455
Q ss_pred CCCEEeeeCCCCCCcCccccCCCCCCCeeeccCcccc
Q 044234 85 CLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 85 ~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
+|+.|++.+|+...........+..|++|+|++|++.
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence 6666666665433222222334455666666666553
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.80 E-value=2.7e-07 Score=87.04 Aligned_cols=112 Identities=29% Similarity=0.346 Sum_probs=81.6
Q ss_pred cCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccccCCCC
Q 044234 5 LPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPITVSSL 83 (276)
Q Consensus 5 LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~~~l 83 (276)
+.+++.-++.|+.|+|++|. ..+.. .+..+++|++|||++|.+..+|.- ...+ +|+.|.+++|. ++.+- ++.++
T Consensus 179 mD~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL~-gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA-LTTLR-GIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeecccH-HHhhh-hHHhh
Confidence 44455557889999999984 44443 677899999999999999988764 3344 49999999884 44443 57789
Q ss_pred CCCCEEeeeCCCCCCcC-ccccCCCCCCCeeeccCcccc
Q 044234 84 KCLRTLKLSGCSKIVKF-PESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 84 ~~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~L~~n~i~ 121 (276)
.+|+.||+++|-..+.- -..++.+..|+.|+|.||++-
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99999999996433211 123566778899999999875
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.73 E-value=1e-05 Score=74.24 Aligned_cols=108 Identities=30% Similarity=0.349 Sum_probs=80.3
Q ss_pred cCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCE
Q 044234 9 ISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRT 88 (276)
Q Consensus 9 l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~ 88 (276)
+..+++|+.|++.+| .++.+...+..+++|++|++++|.|+.+. .+..++.|+.|++++|. +..+. .+..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhcc-CCccchhhhc
Confidence 566888999999988 56666665677889999999999988874 46777789999999884 33333 4555888899
Q ss_pred EeeeCCCCCCcCccc-cCCCCCCCeeeccCcccc
Q 044234 89 LKLSGCSKIVKFPES-VISMEDLSELFLDRTSIT 121 (276)
Q Consensus 89 L~l~~~~~~~~lp~~-l~~l~~L~~L~L~~n~i~ 121 (276)
+++++|... .+... ...+.+++.+++.+|.+.
T Consensus 167 l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 167 LDLSYNRIV-DIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred ccCCcchhh-hhhhhhhhhccchHHHhccCCchh
Confidence 999886543 33322 467778888888888775
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.65 E-value=5.4e-07 Score=85.02 Aligned_cols=124 Identities=21% Similarity=0.212 Sum_probs=74.0
Q ss_pred CCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeCC
Q 044234 15 LSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSGC 94 (276)
Q Consensus 15 L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~ 94 (276)
|.+.+.++| .+..+...+.-++.++.|+|+.|+++.+. .+..+++|+.|||++| .+..+|.--..-.+|..|++++|
T Consensus 166 L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred Hhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhhheeeeeccc
Confidence 445555555 45555566666677778888888777764 6777778888888877 45555532111123777777774
Q ss_pred CCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCC
Q 044234 95 SKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGC 145 (276)
Q Consensus 95 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c 145 (276)
-++.+. .+.++.+|+.||++.|-+. +...|.-|-.| ..|+.|.+.|.
T Consensus 243 -~l~tL~-gie~LksL~~LDlsyNll~-~hseL~pLwsL-s~L~~L~LeGN 289 (1096)
T KOG1859|consen 243 -ALTTLR-GIENLKSLYGLDLSYNLLS-EHSELEPLWSL-SSLIVLWLEGN 289 (1096)
T ss_pred -HHHhhh-hHHhhhhhhccchhHhhhh-cchhhhHHHHH-HHHHHHhhcCC
Confidence 344443 3667777888888877764 22222222222 34555555554
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.61 E-value=3.6e-05 Score=74.70 Aligned_cols=110 Identities=27% Similarity=0.296 Sum_probs=76.8
Q ss_pred CCCCCCEEeecCCCC-CCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCC-cccccCCCCCCCCE
Q 044234 11 GLKSLSTLNLSGTSK-FREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLS-TLPITVSSLKCLRT 88 (276)
Q Consensus 11 ~l~~L~~L~Ls~~~~-l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~~~~l~~L~~ 88 (276)
.||+|+.|.+++-.. ..++-....++++|+.||+++++++.+ .+++++++|+.|.+.+-.... ..-..+.++++|+.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 368888888887432 223455566888999999999999888 678899999998887643322 11124677999999
Q ss_pred EeeeCCCCCCcC--c----cccCCCCCCCeeeccCcccc
Q 044234 89 LKLSGCSKIVKF--P----ESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 89 L~l~~~~~~~~l--p----~~l~~l~~L~~L~L~~n~i~ 121 (276)
||+|.-...... . +.-..+++|+.||.+++.+.
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 999874332211 1 12235789999999998876
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=2.4e-05 Score=70.08 Aligned_cols=61 Identities=25% Similarity=0.264 Sum_probs=31.6
Q ss_pred CCCCCCCEEeecCCCCCCccc-cccCCCCCCcEEEccCCCce--ecCccccCCCCCcEEecCCC
Q 044234 10 SGLKSLSTLNLSGTSKFREFP-EITGRMEHLSNLHLEGTAIR--ELPVSIELLSGLVLLNLKDC 70 (276)
Q Consensus 10 ~~l~~L~~L~Ls~~~~l~~~p-~~~~~l~~L~~L~L~~n~i~--~lp~~i~~l~~L~~L~L~~~ 70 (276)
..|++|+.|+++.|...--.. ..-..+.+|+.|.++.|+++ ++-.....+++|..|+|.+|
T Consensus 169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 357778888888774221111 11124566777777777665 22222333445555555544
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.51 E-value=3.3e-06 Score=64.42 Aligned_cols=104 Identities=18% Similarity=0.292 Sum_probs=68.1
Q ss_pred CCCEEeecCCCCCCccccc---cCCCCCCcEEEccCCCceecCccccC-CCCCcEEecCCCCCCCcccccCCCCCCCCEE
Q 044234 14 SLSTLNLSGTSKFREFPEI---TGRMEHLSNLHLEGTAIRELPVSIEL-LSGLVLLNLKDCRNLSTLPITVSSLKCLRTL 89 (276)
Q Consensus 14 ~L~~L~Ls~~~~l~~~p~~---~~~l~~L~~L~L~~n~i~~lp~~i~~-l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L 89 (276)
.+..++|++| .+..+++. +....+|...++++|.+..+|+.+.. ++.++.|++++| .+.++|..+..++.|+.|
T Consensus 28 E~h~ldLssc-~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSC-QLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccc-hhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhc
Confidence 3556677777 34434433 33445666677888888877776543 456777777776 566777777777888888
Q ss_pred eeeCCCCCCcCccccCCCCCCCeeeccCccc
Q 044234 90 KLSGCSKIVKFPESVISMEDLSELFLDRTSI 120 (276)
Q Consensus 90 ~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i 120 (276)
+++.|. +...|..+..+.+|..|+..+|.+
T Consensus 106 Nl~~N~-l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 106 NLRFNP-LNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred ccccCc-cccchHHHHHHHhHHHhcCCCCcc
Confidence 887753 455666666677777777766654
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.50 E-value=4.6e-06 Score=63.62 Aligned_cols=118 Identities=22% Similarity=0.284 Sum_probs=86.3
Q ss_pred CCCCCCCEEeecCCCCCCccccccC-CCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCE
Q 044234 10 SGLKSLSTLNLSGTSKFREFPEITG-RMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRT 88 (276)
Q Consensus 10 ~~l~~L~~L~Ls~~~~l~~~p~~~~-~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~ 88 (276)
.....|+..+|++| .++.+|..+. ..+.++.|++++|.|.++|..+..++.|+.|+++.| .+...|..+..+.+|-.
T Consensus 50 ~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 50 SKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDM 127 (177)
T ss_pred hCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHH
Confidence 34456777899998 6777876664 445899999999999999999999999999999998 45667777777889999
Q ss_pred EeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcc-cccC
Q 044234 89 LKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKM-LQNL 130 (276)
Q Consensus 89 L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~-L~~L 130 (276)
|+..+| ....+|-++..-+..-..++..+++.+.|+. ++.+
T Consensus 128 Lds~~n-a~~eid~dl~~s~~~al~~lgnepl~~~~~~klqa~ 169 (177)
T KOG4579|consen 128 LDSPEN-ARAEIDVDLFYSSLPALIKLGNEPLGDETKKKLQAL 169 (177)
T ss_pred hcCCCC-ccccCcHHHhccccHHHHHhcCCcccccCccccccc
Confidence 998885 4555554433323333345566777766653 4443
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.44 E-value=4.2e-05 Score=70.28 Aligned_cols=105 Identities=27% Similarity=0.310 Sum_probs=80.9
Q ss_pred CCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEee
Q 044234 12 LKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKL 91 (276)
Q Consensus 12 l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l 91 (276)
+..++.+++..| .+...-..+..+++|+.|++.+|.|+.+...+..+++|+.|++++|... .+. .+..++.|+.|++
T Consensus 71 l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccc-ccc-chhhccchhhhee
Confidence 456666667766 4444445567889999999999999998766889999999999998544 333 3667788999999
Q ss_pred eCCCCCCcCccccCCCCCCCeeeccCcccc
Q 044234 92 SGCSKIVKFPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 92 ~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
++|. +..+.. +..+..|+.+++++|.++
T Consensus 148 ~~N~-i~~~~~-~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 148 SGNL-ISDISG-LESLKSLKLLDLSYNRIV 175 (414)
T ss_pred ccCc-chhccC-CccchhhhcccCCcchhh
Confidence 9964 445543 666889999999999886
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=8.7e-06 Score=69.75 Aligned_cols=146 Identities=21% Similarity=0.145 Sum_probs=94.4
Q ss_pred CCCcEEEccCCCce--ecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeCCCCCCcCc--cccCCCCCCCe
Q 044234 37 EHLSNLHLEGTAIR--ELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSGCSKIVKFP--ESVISMEDLSE 112 (276)
Q Consensus 37 ~~L~~L~L~~n~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~ 112 (276)
..|++||++...|+ .+..-++.+.+|+.|.+.++.....+-..+.+-..|+.|++++|+.++... -.+.+++.|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 35888999998877 444446788899999999987777777777788899999999988766543 23578888999
Q ss_pred eeccCccccccCcccccCCCCCCCccEEeccCCCCCccccchhhhcccCCCCcceeecCCCcchhhHHHHH
Q 044234 113 LFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILSDVLKLNEHRLPSLSLYCVDCSKLTGNYALAL 183 (276)
Q Consensus 113 L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~~~~~~~~~~~~~l~l~~~~c~~L~~~~~~~~ 183 (276)
|+++.+.+...- --..+....+.+..|+++||..--..+...-+...-+....|++++|..|....++++
T Consensus 265 LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~ 334 (419)
T KOG2120|consen 265 LNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 334 (419)
T ss_pred cCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH
Confidence 999665543211 0011223456777888888743222221111111222334677788888877666655
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.33 E-value=2.9e-05 Score=67.75 Aligned_cols=136 Identities=19% Similarity=0.162 Sum_probs=89.0
Q ss_pred ccCCCCCCCEEeecCCCCCCccc----cccCCCCCCcEEEccCCCceecC--------------ccccCCCCCcEEecCC
Q 044234 8 NISGLKSLSTLNLSGTSKFREFP----EITGRMEHLSNLHLEGTAIRELP--------------VSIELLSGLVLLNLKD 69 (276)
Q Consensus 8 ~l~~l~~L~~L~Ls~~~~l~~~p----~~~~~l~~L~~L~L~~n~i~~lp--------------~~i~~l~~L~~L~L~~ 69 (276)
.+..++.|++|+||.|.+-...+ +.+..+..|++|+|.+|++.... .-++.-++|+++..+.
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 34556789999999986555443 34456788999999988776321 1244567788888887
Q ss_pred CCCCCccc-----ccCCCCCCCCEEeeeCCCCCC----cCccccCCCCCCCeeeccCcccccc--CcccccCCCCCCCcc
Q 044234 70 CRNLSTLP-----ITVSSLKCLRTLKLSGCSKIV----KFPESVISMEDLSELFLDRTSITEE--CKMLQNLPRLPASIH 138 (276)
Q Consensus 70 ~~~l~~lp-----~~~~~l~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~L~L~~n~i~~~--~~~L~~L~~L~~~L~ 138 (276)
|. +...+ ..+...+.|+.+.+..|.+.. .+...+.+++.|+.||+.+|-++.. ..--+.++.+| .|+
T Consensus 167 Nr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~-~L~ 244 (382)
T KOG1909|consen 167 NR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP-HLR 244 (382)
T ss_pred cc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc-hhe
Confidence 73 44333 234556788888888765432 2334567888999999999888621 11113445554 778
Q ss_pred EEeccCC
Q 044234 139 WILLNGC 145 (276)
Q Consensus 139 ~L~~~~c 145 (276)
.|++.+|
T Consensus 245 El~l~dc 251 (382)
T KOG1909|consen 245 ELNLGDC 251 (382)
T ss_pred eeccccc
Confidence 8888887
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.23 E-value=0.00064 Score=55.32 Aligned_cols=108 Identities=21% Similarity=0.226 Sum_probs=62.6
Q ss_pred CCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeCCCCCCcCc--cccCCCCCCCee
Q 044234 36 MEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSGCSKIVKFP--ESVISMEDLSEL 113 (276)
Q Consensus 36 l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L 113 (276)
+.....+|+++|.+..++ .+.+++.|.+|.+++|.....-|.--.-+++|..|.+.+|++ ..+- +.+..++.|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcch-hhhhhcchhccCCcccee
Confidence 345667777777776653 366777778887877765555454333456677777777543 2221 224566777888
Q ss_pred eccCccccccCcc-cccCCCCCCCccEEeccCCC
Q 044234 114 FLDRTSITEECKM-LQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 114 ~L~~n~i~~~~~~-L~~L~~L~~~L~~L~~~~c~ 146 (276)
.+-+|+++..-.- +--+..+ ++++.||+.+.+
T Consensus 119 tll~Npv~~k~~YR~yvl~kl-p~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKL-PSLRTLDFQKVT 151 (233)
T ss_pred eecCCchhcccCceeEEEEec-CcceEeehhhhh
Confidence 8877777521100 0011122 466777776654
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.21 E-value=0.00013 Score=70.84 Aligned_cols=130 Identities=18% Similarity=0.296 Sum_probs=85.1
Q ss_pred CCCCEEeecCCCCCC-cccccc-CCCCCCcEEEccCCCce--ecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCE
Q 044234 13 KSLSTLNLSGTSKFR-EFPEIT-GRMEHLSNLHLEGTAIR--ELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRT 88 (276)
Q Consensus 13 ~~L~~L~Ls~~~~l~-~~p~~~-~~l~~L~~L~L~~n~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~ 88 (276)
.+|+.|+++|..... ..|..+ .-+|+|+.|.+.+-.+. ++-.-..++++|..||++++. +..+ .+++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 478899998864332 233333 35799999999996554 223336688999999999974 4444 57888999999
Q ss_pred EeeeCCCCCC-cCccccCCCCCCCeeeccCccccccCccc----ccCCCCCCCccEEeccCC
Q 044234 89 LKLSGCSKIV-KFPESVISMEDLSELFLDRTSITEECKML----QNLPRLPASIHWILLNGC 145 (276)
Q Consensus 89 L~l~~~~~~~-~lp~~l~~l~~L~~L~L~~n~i~~~~~~L----~~L~~L~~~L~~L~~~~c 145 (276)
|.+.+=.... .--..+..|++|+.||+|.........-+ +.-..| +.|+.||.++-
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L-peLrfLDcSgT 260 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVL-PELRFLDCSGT 260 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccC-ccccEEecCCc
Confidence 9886633222 11135778999999999987665333111 111123 37788887753
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.14 E-value=0.00013 Score=61.32 Aligned_cols=116 Identities=21% Similarity=0.200 Sum_probs=64.7
Q ss_pred cccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCC--CCCCcccccCCCCCCCCEEeeeCCCCC--CcCcccc
Q 044234 29 FPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDC--RNLSTLPITVSSLKCLRTLKLSGCSKI--VKFPESV 104 (276)
Q Consensus 29 ~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~--~~l~~lp~~~~~l~~L~~L~l~~~~~~--~~lp~~l 104 (276)
+.........|+.|.+.+..++.+ ..+..+++|+.|.++.| .....++.....+++|++|++++|.+. .+++ .+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PL 112 (260)
T ss_pred cccccccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hh
Confidence 444444456666666666665544 23556778888888887 455555555556678888888886542 2222 13
Q ss_pred CCCCCCCeeeccCccccccCccc-ccCCCCCCCccEEeccCCCC
Q 044234 105 ISMEDLSELFLDRTSITEECKML-QNLPRLPASIHWILLNGCVS 147 (276)
Q Consensus 105 ~~l~~L~~L~L~~n~i~~~~~~L-~~L~~L~~~L~~L~~~~c~~ 147 (276)
..+.+|..|++..+..+. +..- ..+-.+-++|++|+-..+..
T Consensus 113 ~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence 455666677776555442 1110 11112335566666555543
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=7.1e-05 Score=64.27 Aligned_cols=13 Identities=23% Similarity=0.237 Sum_probs=7.0
Q ss_pred CCCCCCeeeccCc
Q 044234 106 SMEDLSELFLDRT 118 (276)
Q Consensus 106 ~l~~L~~L~L~~n 118 (276)
.+++|.+|||+++
T Consensus 311 rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 311 RCPNLVHLDLSDS 323 (419)
T ss_pred hCCceeeeccccc
Confidence 4455555665544
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.74 E-value=0.0008 Score=58.92 Aligned_cols=134 Identities=22% Similarity=0.263 Sum_probs=83.0
Q ss_pred CCCCCCEEeecCCCCCCc-----cccccCCCCCCcEEEccCCCce-----ecCccccCCCCCcEEecCCCCCCCc----c
Q 044234 11 GLKSLSTLNLSGTSKFRE-----FPEITGRMEHLSNLHLEGTAIR-----ELPVSIELLSGLVLLNLKDCRNLST----L 76 (276)
Q Consensus 11 ~l~~L~~L~Ls~~~~l~~-----~p~~~~~l~~L~~L~L~~n~i~-----~lp~~i~~l~~L~~L~L~~~~~l~~----l 76 (276)
+-+.|+++...+| .++. +...+...+.|+.+.+..|.|. -+...+.++++|+.|||.+|.+... +
T Consensus 155 ~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 155 SKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCcceEEEEeecc-ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 3456777777776 3433 2344566678888888887665 2234577888899999988866543 3
Q ss_pred cccCCCCCCCCEEeeeCCCCCCcCc----ccc-CCCCCCCeeeccCccccccCcc-c-ccCCCCCCCccEEeccCCC
Q 044234 77 PITVSSLKCLRTLKLSGCSKIVKFP----ESV-ISMEDLSELFLDRTSITEECKM-L-QNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 77 p~~~~~l~~L~~L~l~~~~~~~~lp----~~l-~~l~~L~~L~L~~n~i~~~~~~-L-~~L~~L~~~L~~L~~~~c~ 146 (276)
...+..+++|+.|++++|.....-. +.+ ...++|+.|.+.+|.|+..-.. + ..+.. -+.|..|++++|.
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~ 309 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNR 309 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCccc
Confidence 3456677888888888886543221 222 3467888888888888721100 0 11112 2455677777763
No 57
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.59 E-value=0.0011 Score=34.02 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=12.7
Q ss_pred CCcEEEccCCCceecCccccC
Q 044234 38 HLSNLHLEGTAIRELPVSIEL 58 (276)
Q Consensus 38 ~L~~L~L~~n~i~~lp~~i~~ 58 (276)
+|++|++++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665543
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.51 E-value=0.0032 Score=51.31 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=75.4
Q ss_pred CCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccC-CCCCcEEecCCCCCCCccc--ccCCCCCCCCE
Q 044234 12 LKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIEL-LSGLVLLNLKDCRNLSTLP--ITVSSLKCLRT 88 (276)
Q Consensus 12 l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~-l~~L~~L~L~~~~~l~~lp--~~~~~l~~L~~ 88 (276)
+.+...+||++| .+..++ .+..++.|..|.+++|.|+.+.+.+.. +++|+.|.+.+|.. ..+- +-+..+++|+.
T Consensus 41 ~d~~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcch-hhhhhcchhccCCccce
Confidence 346778899998 444443 355789999999999999999777554 57899999999854 2222 23557889999
Q ss_pred EeeeCCCCCCcC---ccccCCCCCCCeeeccCc
Q 044234 89 LKLSGCSKIVKF---PESVISMEDLSELFLDRT 118 (276)
Q Consensus 89 L~l~~~~~~~~l---p~~l~~l~~L~~L~L~~n 118 (276)
|.+-+|.....- --.+..+++|+.||..+-
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 999987543321 123678899999998653
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.49 E-value=0.0014 Score=55.16 Aligned_cols=88 Identities=20% Similarity=0.196 Sum_probs=61.5
Q ss_pred CCCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeCC--CCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCC
Q 044234 58 LLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSGC--SKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPA 135 (276)
Q Consensus 58 ~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~--~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~ 135 (276)
.+..|+.|.+.++..++ +. .+-.+++|+.|.++.| ...+.++-....+++|++|++++|.++. ...+.-++++ .
T Consensus 41 ~~~~le~ls~~n~gltt-~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l-~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT-LT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKEL-E 116 (260)
T ss_pred cccchhhhhhhccceee-cc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhh-c
Confidence 34566666666653322 21 3446889999999998 4555565556677999999999999963 5555555555 4
Q ss_pred CccEEeccCCCCCc
Q 044234 136 SIHWILLNGCVSLE 149 (276)
Q Consensus 136 ~L~~L~~~~c~~L~ 149 (276)
+|..|++.+|....
T Consensus 117 nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN 130 (260)
T ss_pred chhhhhcccCCccc
Confidence 78899999987654
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.0013 Score=56.65 Aligned_cols=88 Identities=26% Similarity=0.317 Sum_probs=58.8
Q ss_pred CCCCCCcEEEccCCCce---ecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeCCCCC-CcCccccCCCCC
Q 044234 34 GRMEHLSNLHLEGTAIR---ELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSGCSKI-VKFPESVISMED 109 (276)
Q Consensus 34 ~~l~~L~~L~L~~n~i~---~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~-~~lp~~l~~l~~ 109 (276)
...+.++.+|+.+|.|+ ++..-+.++++|++|+++.|.....+...=....+|+.|-+.+.... ...-..+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 34678899999999887 44445778999999999988543332211024568888888774321 122234567778
Q ss_pred CCeeeccCcccc
Q 044234 110 LSELFLDRTSIT 121 (276)
Q Consensus 110 L~~L~L~~n~i~ 121 (276)
+++|+++.|.+.
T Consensus 148 vtelHmS~N~~r 159 (418)
T KOG2982|consen 148 VTELHMSDNSLR 159 (418)
T ss_pred hhhhhhccchhh
Confidence 888888888543
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.00016 Score=61.58 Aligned_cols=99 Identities=23% Similarity=0.255 Sum_probs=67.3
Q ss_pred CCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCccc--ccCCCCCCCCEE
Q 044234 12 LKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLP--ITVSSLKCLRTL 89 (276)
Q Consensus 12 l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp--~~~~~l~~L~~L 89 (276)
+.+.+.|+..|| .+..+. ....|+.|++|.|+-|+|+.+. .+..+++|++|+|..|. +.++. .-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCC-CccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence 456677777777 344432 3356888899999988888873 47888888888888773 33322 124578888888
Q ss_pred eeeCCCCCCcCccc-----cCCCCCCCeee
Q 044234 90 KLSGCSKIVKFPES-----VISMEDLSELF 114 (276)
Q Consensus 90 ~l~~~~~~~~lp~~-----l~~l~~L~~L~ 114 (276)
.|..|...+.-+.. +.-|++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88887766655432 44566676665
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.12 E-value=0.027 Score=42.29 Aligned_cols=100 Identities=11% Similarity=0.222 Sum_probs=53.4
Q ss_pred ccCCCCCCCEEeecCCCCCCcc-ccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCccc-ccCCCCC
Q 044234 8 NISGLKSLSTLNLSGTSKFREF-PEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLP-ITVSSLK 84 (276)
Q Consensus 8 ~l~~l~~L~~L~Ls~~~~l~~~-p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp-~~~~~l~ 84 (276)
.|.++.+|+.+.+... .+.+ ...+..+++|+.+.+.++ +..++.. +.++.+|+.+.+.++ ...++ ..+..++
T Consensus 7 ~F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccc
Confidence 4667778888888753 4444 345677778888888775 7777554 777778888888652 33333 3455688
Q ss_pred CCCEEeeeCCCCCCcCc-cccCCCCCCCeeec
Q 044234 85 CLRTLKLSGCSKIVKFP-ESVISMEDLSELFL 115 (276)
Q Consensus 85 ~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~L 115 (276)
+|+.+++..+ ...++ ..+.+. .|+.+.+
T Consensus 82 ~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 82 NLKNIDIPSN--ITEIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp TECEEEETTT---BEEHTTTTTT--T--EEE-
T ss_pred cccccccCcc--ccEEchhhhcCC-CceEEEE
Confidence 8888888652 33333 234444 6666665
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.013 Score=50.66 Aligned_cols=61 Identities=28% Similarity=0.350 Sum_probs=34.2
Q ss_pred CCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCce--ecCccccCCCCCcEEecCCC
Q 044234 10 SGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIR--ELPVSIELLSGLVLLNLKDC 70 (276)
Q Consensus 10 ~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~--~lp~~i~~l~~L~~L~L~~~ 70 (276)
.+++.|++|+++.|+....+...-..+.+|+.|-+.|+.+. ...+.+..++.++.|.++.|
T Consensus 94 e~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 94 EQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred hcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 45666777777766433222111124556667766666443 44445666667777766665
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.34 E-value=0.0063 Score=51.98 Aligned_cols=135 Identities=20% Similarity=0.169 Sum_probs=78.2
Q ss_pred cCCCCCCCEEeecCCCCCCccccc----cCCCCCCcEEEccCCCceecCcc-c-------------cCCCCCcEEecCCC
Q 044234 9 ISGLKSLSTLNLSGTSKFREFPEI----TGRMEHLSNLHLEGTAIRELPVS-I-------------ELLSGLVLLNLKDC 70 (276)
Q Consensus 9 l~~l~~L~~L~Ls~~~~l~~~p~~----~~~l~~L~~L~L~~n~i~~lp~~-i-------------~~l~~L~~L~L~~~ 70 (276)
+-+|+.|+..+||.|.+...+|+. +..-+.|.+|.+++|++..+... | .+-+.|+......|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 456788888888888766665543 45567788888888876643221 2 23466777777666
Q ss_pred CCCCcccc-----cCCCCCCCCEEeeeCCCCCCc-----CccccCCCCCCCeeeccCccccccCcc-c-ccCCCCCCCcc
Q 044234 71 RNLSTLPI-----TVSSLKCLRTLKLSGCSKIVK-----FPESVISMEDLSELFLDRTSITEECKM-L-QNLPRLPASIH 138 (276)
Q Consensus 71 ~~l~~lp~-----~~~~l~~L~~L~l~~~~~~~~-----lp~~l~~l~~L~~L~L~~n~i~~~~~~-L-~~L~~L~~~L~ 138 (276)
+ +...|. .+..-..|+.+.+..|.+... +-..+..+.+|+.||+..|-++..-.. | ..++..+ .|+
T Consensus 168 R-lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lr 245 (388)
T COG5238 168 R-LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLR 245 (388)
T ss_pred h-hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhh
Confidence 3 222221 122224677777777644322 111244567888888888877621111 1 2233443 367
Q ss_pred EEeccCC
Q 044234 139 WILLNGC 145 (276)
Q Consensus 139 ~L~~~~c 145 (276)
.|.+.+|
T Consensus 246 EL~lnDC 252 (388)
T COG5238 246 ELRLNDC 252 (388)
T ss_pred hccccch
Confidence 7777777
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.87 E-value=0.0017 Score=55.53 Aligned_cols=79 Identities=22% Similarity=0.201 Sum_probs=61.7
Q ss_pred CCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc--ccCCCCCcEEecCCCCCCCccccc-----CCC
Q 044234 10 SGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS--IELLSGLVLLNLKDCRNLSTLPIT-----VSS 82 (276)
Q Consensus 10 ~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~--i~~l~~L~~L~L~~~~~l~~lp~~-----~~~ 82 (276)
..++.|++|.|+-|. ++.+. .+..+++|++|+|..|.|..+.+- +.++++|+.|+|..|...+..+.. +.-
T Consensus 38 ~kMp~lEVLsLSvNk-IssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNK-ISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred HhcccceeEEeeccc-cccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 357899999999984 44443 355789999999999999987554 789999999999999877765532 345
Q ss_pred CCCCCEEe
Q 044234 83 LKCLRTLK 90 (276)
Q Consensus 83 l~~L~~L~ 90 (276)
+++|+.||
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 77888775
No 66
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.85 E-value=0.018 Score=27.48 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=4.8
Q ss_pred CcEEEccCCCceec
Q 044234 39 LSNLHLEGTAIREL 52 (276)
Q Consensus 39 L~~L~L~~n~i~~l 52 (276)
|+.|++++|.++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444433
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.21 E-value=0.19 Score=37.63 Aligned_cols=84 Identities=10% Similarity=0.232 Sum_probs=50.0
Q ss_pred ccCc-ccCCCCCCCEEeecCCCCCCccc-cccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCccc-cc
Q 044234 4 SLPR-NISGLKSLSTLNLSGTSKFREFP-EITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLP-IT 79 (276)
Q Consensus 4 ~LP~-~l~~l~~L~~L~Ls~~~~l~~~p-~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp-~~ 79 (276)
.+++ .|.++++|+.+.+.++ +..++ ..+..+.+++.+.+.+ .+..++.. +..+++|+.+++..+ ...++ ..
T Consensus 25 ~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~ 99 (129)
T PF13306_consen 25 KIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSS 99 (129)
T ss_dssp EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT---BEEHTTT
T ss_pred EeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccccccccCcc--ccEEchhh
Confidence 3433 4677889999999885 44444 4567777899999976 66666554 778999999999764 33343 44
Q ss_pred CCCCCCCCEEeeeC
Q 044234 80 VSSLKCLRTLKLSG 93 (276)
Q Consensus 80 ~~~l~~L~~L~l~~ 93 (276)
+.+. +|+.+.+..
T Consensus 100 f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 100 FSNC-NLKEINIPS 112 (129)
T ss_dssp TTT--T--EEE-TT
T ss_pred hcCC-CceEEEECC
Confidence 5665 888888765
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.77 E-value=0.031 Score=28.47 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=9.3
Q ss_pred CcEEecCCCCCCCcccccCC
Q 044234 62 LVLLNLKDCRNLSTLPITVS 81 (276)
Q Consensus 62 L~~L~L~~~~~l~~lp~~~~ 81 (276)
|++|++++|. ++.+|.+++
T Consensus 2 L~~Ldls~n~-l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSE-ESEEGTTTT
T ss_pred ccEEECCCCc-CEeCChhhc
Confidence 4555555552 335554443
No 69
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.27 E-value=0.1 Score=27.61 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=14.2
Q ss_pred CCCCcEEEccCCCceecCcc
Q 044234 36 MEHLSNLHLEGTAIRELPVS 55 (276)
Q Consensus 36 l~~L~~L~L~~n~i~~lp~~ 55 (276)
+++|++|++++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777664
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.27 E-value=0.1 Score=27.61 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=14.2
Q ss_pred CCCCcEEEccCCCceecCcc
Q 044234 36 MEHLSNLHLEGTAIRELPVS 55 (276)
Q Consensus 36 l~~L~~L~L~~n~i~~lp~~ 55 (276)
+++|++|++++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777664
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.95 E-value=0.0021 Score=53.58 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=38.1
Q ss_pred CCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeecc
Q 044234 37 EHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLD 116 (276)
Q Consensus 37 ~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~ 116 (276)
...+.||++.|.+..+...++.++.|..|+++.| ....+|..++....++++++.. +.....|.+++..+.++++++-
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhhhc
Confidence 3344444444444444444444444555555443 2334444444444444444433 2344445455555555555555
Q ss_pred Cccc
Q 044234 117 RTSI 120 (276)
Q Consensus 117 ~n~i 120 (276)
+|.+
T Consensus 120 ~~~~ 123 (326)
T KOG0473|consen 120 KTEF 123 (326)
T ss_pred cCcc
Confidence 5443
No 72
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=91.50 E-value=0.11 Score=46.90 Aligned_cols=138 Identities=23% Similarity=0.305 Sum_probs=84.7
Q ss_pred CCCCCCEEeecCCCCCCccc--cccCCCCCCcEEEccCCC-ceecCcc--ccCCCCCcEEecCCCCCCCc--ccccCCCC
Q 044234 11 GLKSLSTLNLSGTSKFREFP--EITGRMEHLSNLHLEGTA-IRELPVS--IELLSGLVLLNLKDCRNLST--LPITVSSL 83 (276)
Q Consensus 11 ~l~~L~~L~Ls~~~~l~~~p--~~~~~l~~L~~L~L~~n~-i~~lp~~--i~~l~~L~~L~L~~~~~l~~--lp~~~~~l 83 (276)
.+..|++|+.++|...+..+ ....+..+|+.|.+++++ ++..-.. -.++..|+.+++.+|..... +-..-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 36788999999987655432 233567889999998874 4433211 24578899999988754332 22223467
Q ss_pred CCCCEEeeeCCCCCCcC-----ccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCcc
Q 044234 84 KCLRTLKLSGCSKIVKF-----PESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEI 150 (276)
Q Consensus 84 ~~L~~L~l~~~~~~~~l-----p~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~ 150 (276)
+.|+.|.++.|..++.. ...-..+..|+.+.+++.+.... ..++.+. ...+|+.+++.+|....+
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d-~~Le~l~-~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD-ATLEHLS-ICRNLERIELIDCQDVTK 441 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH-HHHHHHh-hCcccceeeeechhhhhh
Confidence 88999999988665433 22334566788888865554310 0112221 124677788888876543
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.66 E-value=0.024 Score=52.49 Aligned_cols=109 Identities=27% Similarity=0.343 Sum_probs=67.1
Q ss_pred CCCCCEEeecCCCCCCc--cccccCCCCCCcEEEccCC--CceecC----ccccCCCCCcEEecCCCCCCCccc-ccC-C
Q 044234 12 LKSLSTLNLSGTSKFRE--FPEITGRMEHLSNLHLEGT--AIRELP----VSIELLSGLVLLNLKDCRNLSTLP-ITV-S 81 (276)
Q Consensus 12 l~~L~~L~Ls~~~~l~~--~p~~~~~l~~L~~L~L~~n--~i~~lp----~~i~~l~~L~~L~L~~~~~l~~lp-~~~-~ 81 (276)
++.|+.|.+.+|..+.. +-......+.|+.|+++++ .+...+ .....+.+|+.|+++++...+..- ..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 67788888888876665 3355567788888888873 222111 234456788888888876433211 111 2
Q ss_pred CCCCCCEEeeeCCCCCC--cCccccCCCCCCCeeeccCccc
Q 044234 82 SLKCLRTLKLSGCSKIV--KFPESVISMEDLSELFLDRTSI 120 (276)
Q Consensus 82 ~l~~L~~L~l~~~~~~~--~lp~~l~~l~~L~~L~L~~n~i 120 (276)
.+++|++|.+.+|..++ .+-.....++.|++|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 36788888877776422 2223345677788888876543
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.62 E-value=0.053 Score=44.33 Aligned_cols=78 Identities=19% Similarity=0.334 Sum_probs=46.8
Q ss_pred CCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCCccc-ccC-CCCCCCCEEeeeCCCCCCcCc-cccCCCCCCCee
Q 044234 38 HLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLSTLP-ITV-SSLKCLRTLKLSGCSKIVKFP-ESVISMEDLSEL 113 (276)
Q Consensus 38 ~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp-~~~-~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L 113 (276)
.++.++.+++.|... -..+.+++.++.|.+.+|......- +.+ +-.++|+.|++++|..++..- ..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 466677777766643 2336677777788888776654321 011 134678888888887665432 335556666666
Q ss_pred ec
Q 044234 114 FL 115 (276)
Q Consensus 114 ~L 115 (276)
.+
T Consensus 182 ~l 183 (221)
T KOG3864|consen 182 HL 183 (221)
T ss_pred Hh
Confidence 66
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.95 E-value=0.053 Score=50.16 Aligned_cols=163 Identities=26% Similarity=0.338 Sum_probs=92.5
Q ss_pred cCCCCCCCEEeecCC-CCCCccc----cccCCCCCCcEEEccCCC-ceecC-ccc-cCCCCCcEEecCCCCCCCc--ccc
Q 044234 9 ISGLKSLSTLNLSGT-SKFREFP----EITGRMEHLSNLHLEGTA-IRELP-VSI-ELLSGLVLLNLKDCRNLST--LPI 78 (276)
Q Consensus 9 l~~l~~L~~L~Ls~~-~~l~~~p----~~~~~l~~L~~L~L~~n~-i~~lp-~~i-~~l~~L~~L~L~~~~~l~~--lp~ 78 (276)
...+++|+.|++++| ......+ .....+.+|+.|+++++. +++.- ..+ ..+++|+.|.+.+|..++. +-.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 345789999999983 2222222 234456889999999987 66432 112 2378999999888864322 222
Q ss_pred cCCCCCCCCEEeeeCCCCCCc--CccccCCCCCCCeeeccCccccccCcccccC-----CCCC-CCccEEeccCCCCCcc
Q 044234 79 TVSSLKCLRTLKLSGCSKIVK--FPESVISMEDLSELFLDRTSITEECKMLQNL-----PRLP-ASIHWILLNGCVSLEI 150 (276)
Q Consensus 79 ~~~~l~~L~~L~l~~~~~~~~--lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L-----~~L~-~~L~~L~~~~c~~L~~ 150 (276)
....+++|++|++++|..++. +.....++++|+.|.+.... .|..++.+ .... ..+..+.+.+|+.+..
T Consensus 290 i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~---~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~ 366 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN---GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTD 366 (482)
T ss_pred HHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC---CCccHHHHHHHHhhccCchhHhHHHHhcCCCcch
Confidence 344678899999999977532 22334456666665542221 12222221 2222 2566666777777766
Q ss_pred ccchhhhcccCCCCcceeecCCCcch
Q 044234 151 LSDVLKLNEHRLPSLSLYCVDCSKLT 176 (276)
Q Consensus 151 ~~~~~~~~~~~~~~l~l~~~~c~~L~ 176 (276)
+...... .....+.+.+.+|+.++
T Consensus 367 ~~l~~~~--~~~~~~~~~l~gc~~l~ 390 (482)
T KOG1947|consen 367 LSLSYCG--ISDLGLELSLRGCPNLT 390 (482)
T ss_pred hhhhhhh--ccCcchHHHhcCCcccc
Confidence 5543211 11111134566777774
No 76
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=88.82 E-value=0.36 Score=41.55 Aligned_cols=110 Identities=19% Similarity=0.194 Sum_probs=74.6
Q ss_pred CCCCCCEEeecCCCCCCc----cccccCCCCCCcEEEccCCCce----ecCc-------cccCCCCCcEEecCCCCCCCc
Q 044234 11 GLKSLSTLNLSGTSKFRE----FPEITGRMEHLSNLHLEGTAIR----ELPV-------SIELLSGLVLLNLKDCRNLST 75 (276)
Q Consensus 11 ~l~~L~~L~Ls~~~~l~~----~p~~~~~l~~L~~L~L~~n~i~----~lp~-------~i~~l~~L~~L~L~~~~~l~~ 75 (276)
.+..+..++||+|.+.++ +...+.+-.+|+..+++.-... ++++ .+-.+++|+..+|+.|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 367889999999966554 3445566788888888764221 3333 345789999999999977666
Q ss_pred ccc----cCCCCCCCCEEeeeCCCCCCcCcc--------------ccCCCCCCCeeeccCcccc
Q 044234 76 LPI----TVSSLKCLRTLKLSGCSKIVKFPE--------------SVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 76 lp~----~~~~l~~L~~L~l~~~~~~~~lp~--------------~l~~l~~L~~L~L~~n~i~ 121 (276)
.|. -+++-+.|.+|.+++|. ++.+.. ....-+.|+......|++.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 654 35567889999998864 332211 1224456788888888775
No 77
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=86.82 E-value=0.25 Score=44.78 Aligned_cols=164 Identities=16% Similarity=0.167 Sum_probs=98.7
Q ss_pred CCCCEEeecCCCCCCccc--cccCCCCCCcEEEccCC-Cceec--CccccCCCCCcEEecCCCCCCCcccc--cCCCCCC
Q 044234 13 KSLSTLNLSGTSKFREFP--EITGRMEHLSNLHLEGT-AIREL--PVSIELLSGLVLLNLKDCRNLSTLPI--TVSSLKC 85 (276)
Q Consensus 13 ~~L~~L~Ls~~~~l~~~p--~~~~~l~~L~~L~L~~n-~i~~l--p~~i~~l~~L~~L~L~~~~~l~~lp~--~~~~l~~ 85 (276)
.-+..+++..|..++... ..-..+..|++|+.+++ .++.. ..-..+..+|++|.+.+|+..+..-. --.+...
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 345666777775554422 22345788999999886 44432 12256789999999999986554321 1235788
Q ss_pred CCEEeeeCCCCCCc--CccccCCCCCCCeeeccCcccccc--CcccccCCCCCCCccEEeccCCCCCccccchhhhcccC
Q 044234 86 LRTLKLSGCSKIVK--FPESVISMEDLSELFLDRTSITEE--CKMLQNLPRLPASIHWILLNGCVSLEILSDVLKLNEHR 161 (276)
Q Consensus 86 L~~L~l~~~~~~~~--lp~~l~~l~~L~~L~L~~n~i~~~--~~~L~~L~~L~~~L~~L~~~~c~~L~~~~~~~~~~~~~ 161 (276)
|+.+++.+|..... +...-.+++.|+.|.++++....+ ...+.....--..++.+.+.+|+.+.+...........
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 99999998765432 333345788999999965533211 12222222223567788888998776554433222333
Q ss_pred CCCcceeecCCCcchhh
Q 044234 162 LPSLSLYCVDCSKLTGN 178 (276)
Q Consensus 162 ~~~l~l~~~~c~~L~~~ 178 (276)
+.. +....|...+.+
T Consensus 428 Ler--i~l~~~q~vtk~ 442 (483)
T KOG4341|consen 428 LER--IELIDCQDVTKE 442 (483)
T ss_pred cce--eeeechhhhhhh
Confidence 333 456777776543
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.94 E-value=0.017 Score=48.25 Aligned_cols=88 Identities=17% Similarity=0.160 Sum_probs=74.0
Q ss_pred ccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCC
Q 044234 8 NISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLR 87 (276)
Q Consensus 8 ~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~ 87 (276)
.+..++..+.||++.| .+..+...+.-++.+..|+++.|.|..+|..++....++.+++..| .....|.+++..+.++
T Consensus 37 ei~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcc
Confidence 3667788999999998 4555666666788899999999999999999999998999988876 6888999999999999
Q ss_pred EEeeeCCCCC
Q 044234 88 TLKLSGCSKI 97 (276)
Q Consensus 88 ~L~l~~~~~~ 97 (276)
.+++-++...
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 9999886644
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.86 E-value=0.99 Score=24.04 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=11.5
Q ss_pred CCcEEEccCCCceecCc
Q 044234 38 HLSNLHLEGTAIRELPV 54 (276)
Q Consensus 38 ~L~~L~L~~n~i~~lp~ 54 (276)
+|++|++++|.++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 46667777777776665
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.21 E-value=1.7 Score=23.14 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=9.7
Q ss_pred CCCcEEEccCCCceec
Q 044234 37 EHLSNLHLEGTAIREL 52 (276)
Q Consensus 37 ~~L~~L~L~~n~i~~l 52 (276)
++|+.|++++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666544
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.17 E-value=1.2 Score=36.59 Aligned_cols=66 Identities=20% Similarity=0.251 Sum_probs=32.4
Q ss_pred CCCEEeeeCCCCCCcCccccCCCCCCCeeeccCcccc-ccCcccccCCCCCCCccEEeccCCCCCcccc
Q 044234 85 CLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSIT-EECKMLQNLPRLPASIHWILLNGCVSLEILS 152 (276)
Q Consensus 85 ~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~-~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~ 152 (276)
.++.++-+++.+...--+.+..+++++.|.+.++.-. +.| |+.+..+-++|+.|++++|+.+++--
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~--L~~l~~~~~~L~~L~lsgC~rIT~~G 168 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC--LERLGGLAPSLQDLDLSGCPRITDGG 168 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH--HHHhcccccchheeeccCCCeechhH
Confidence 3455555554433332333445555555555222111 111 23344455777888888877665443
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=72.10 E-value=2.3 Score=21.70 Aligned_cols=14 Identities=29% Similarity=0.442 Sum_probs=5.9
Q ss_pred CCCcEEEccCCCce
Q 044234 37 EHLSNLHLEGTAIR 50 (276)
Q Consensus 37 ~~L~~L~L~~n~i~ 50 (276)
++|++|++++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555443
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=67.38 E-value=4.5 Score=21.11 Aligned_cols=15 Identities=33% Similarity=0.569 Sum_probs=9.7
Q ss_pred CCCCEEeecCCCCCC
Q 044234 13 KSLSTLNLSGTSKFR 27 (276)
Q Consensus 13 ~~L~~L~Ls~~~~l~ 27 (276)
++|+.|++++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 567777777775443
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=58.83 E-value=7.4 Score=20.81 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=7.1
Q ss_pred CCcEEEccCCCce
Q 044234 38 HLSNLHLEGTAIR 50 (276)
Q Consensus 38 ~L~~L~L~~n~i~ 50 (276)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555543
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=45.48 E-value=0.41 Score=44.84 Aligned_cols=15 Identities=33% Similarity=0.545 Sum_probs=7.3
Q ss_pred CCCCCcEEEccCCCc
Q 044234 35 RMEHLSNLHLEGTAI 49 (276)
Q Consensus 35 ~l~~L~~L~L~~n~i 49 (276)
...+++.+++..|.+
T Consensus 170 ~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 170 KNEHLTELDLSLNGL 184 (478)
T ss_pred cccchhHHHHHhccc
Confidence 344455555555543
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=32.34 E-value=28 Score=39.51 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=7.3
Q ss_pred CCCCCCCCEEeeeCC
Q 044234 80 VSSLKCLRTLKLSGC 94 (276)
Q Consensus 80 ~~~l~~L~~L~l~~~ 94 (276)
|..+++|+.|+|++|
T Consensus 15 F~~L~sL~~LdLsgN 29 (2740)
T TIGR00864 15 CANLCNLSEIDLSGN 29 (2740)
T ss_pred hccCCCceEEEeeCC
Confidence 344445555555544
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=32.20 E-value=20 Score=34.00 Aligned_cols=18 Identities=28% Similarity=0.626 Sum_probs=10.0
Q ss_pred CCCCCCeeEEEEEEEEec
Q 044234 231 TYKNSKLVGYAMCCVFHV 248 (276)
Q Consensus 231 ~~~~~~~~g~~~c~v~~~ 248 (276)
|+...+.+||++--||..
T Consensus 440 ~~~~~~~l~ftv~G~f~d 457 (585)
T KOG3763|consen 440 WYQTGNLLGFTVAGVFRD 457 (585)
T ss_pred eecccceEEEEEEEEeec
Confidence 443455566666655554
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=32.03 E-value=23 Score=33.68 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=19.2
Q ss_pred CCCCCcEEEccCCCceecCc---cccCCCCCcEEecCCC
Q 044234 35 RMEHLSNLHLEGTAIRELPV---SIELLSGLVLLNLKDC 70 (276)
Q Consensus 35 ~l~~L~~L~L~~n~i~~lp~---~i~~l~~L~~L~L~~~ 70 (276)
+.+.+..+++++|++..+.. --...++|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44555666666665554321 1234456666666665
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.55 E-value=54 Score=37.40 Aligned_cols=31 Identities=19% Similarity=0.401 Sum_probs=21.3
Q ss_pred eecCCCCCCcc-ccccCCCCCCcEEEccCCCce
Q 044234 19 NLSGTSKFREF-PEITGRMEHLSNLHLEGTAIR 50 (276)
Q Consensus 19 ~Ls~~~~l~~~-p~~~~~l~~L~~L~L~~n~i~ 50 (276)
||++|. +..+ +..+..+++|+.|+|++|.+.
T Consensus 1 DLSnN~-LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNK-ISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCc-CCccChHHhccCCCceEEEeeCCccc
Confidence 467774 4444 456677888888888887655
Done!