Query 044234
Match_columns 276
No_of_seqs 394 out of 2593
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 22:19:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.8 9.2E-19 3.2E-23 154.1 15.2 164 2-175 93-266 (328)
2 4fcg_A Uncharacterized protein 99.7 1.3E-17 4.4E-22 146.8 12.1 164 2-175 116-290 (328)
3 3e6j_A Variable lymphocyte rec 99.7 2.4E-15 8.3E-20 125.5 15.5 139 2-146 31-170 (229)
4 2v9t_B SLIT homolog 2 protein 99.7 1.2E-15 4.2E-20 126.6 13.2 140 2-146 23-163 (220)
5 1ogq_A PGIP-2, polygalacturona 99.6 5.8E-16 2E-20 135.2 10.9 138 4-146 67-208 (313)
6 2v9t_B SLIT homolog 2 protein 99.6 4.9E-15 1.7E-19 122.9 15.5 131 16-153 14-145 (220)
7 3m19_A Variable lymphocyte rec 99.6 8.3E-15 2.8E-19 123.7 16.7 146 2-153 26-172 (251)
8 1ogq_A PGIP-2, polygalacturona 99.6 8.9E-16 3E-20 134.0 10.9 139 4-146 92-232 (313)
9 3m19_A Variable lymphocyte rec 99.6 7.6E-15 2.6E-19 123.9 16.0 142 2-146 47-190 (251)
10 1w8a_A SLIT protein; signaling 99.6 2.4E-15 8.2E-20 122.2 12.3 121 2-125 20-143 (192)
11 2o6q_A Variable lymphocyte rec 99.6 1.1E-14 3.8E-19 124.3 17.0 140 9-153 57-198 (270)
12 2v70_A SLIT-2, SLIT homolog 2 99.6 2.5E-15 8.4E-20 124.7 12.5 139 2-146 23-164 (220)
13 2wfh_A SLIT homolog 2 protein 99.6 4.3E-15 1.5E-19 120.8 13.0 121 2-125 22-143 (193)
14 2v70_A SLIT-2, SLIT homolog 2 99.6 1.2E-14 4.2E-19 120.5 14.5 131 15-152 13-145 (220)
15 4ezg_A Putative uncharacterize 99.6 5.9E-15 2E-19 120.1 12.4 134 10-152 41-175 (197)
16 2o6s_A Variable lymphocyte rec 99.6 7.7E-15 2.6E-19 120.3 13.1 141 2-147 19-160 (208)
17 2z62_A TOLL-like receptor 4, v 99.6 1.4E-14 5E-19 123.7 15.0 119 3-121 41-162 (276)
18 3rfs_A Internalin B, repeat mo 99.6 2.4E-14 8.2E-19 122.4 16.3 144 3-153 54-198 (272)
19 2z66_A Variable lymphocyte rec 99.6 7.6E-15 2.6E-19 127.3 13.3 141 2-146 90-234 (306)
20 1ozn_A Reticulon 4 receptor; N 99.6 3.2E-14 1.1E-18 122.1 17.1 109 13-121 32-142 (285)
21 3e6j_A Variable lymphocyte rec 99.6 6E-15 2E-19 123.1 12.1 127 2-130 52-181 (229)
22 2o6s_A Variable lymphocyte rec 99.6 3.4E-14 1.1E-18 116.4 16.3 131 16-153 10-141 (208)
23 2o6q_A Variable lymphocyte rec 99.6 3.2E-14 1.1E-18 121.4 16.8 146 2-153 28-174 (270)
24 3rgz_A Protein brassinosteroid 99.6 6.8E-15 2.3E-19 143.3 12.6 146 4-153 481-698 (768)
25 2z62_A TOLL-like receptor 4, v 99.6 4.6E-14 1.6E-18 120.6 16.4 145 2-153 19-166 (276)
26 1ozn_A Reticulon 4 receptor; N 99.6 2.1E-14 7.3E-19 123.3 14.3 148 2-153 68-218 (285)
27 3rfs_A Internalin B, repeat mo 99.6 1.5E-14 5.2E-19 123.6 13.1 143 2-148 75-218 (272)
28 2o6r_A Variable lymphocyte rec 99.6 1.2E-14 4.3E-19 116.1 11.7 125 2-129 19-145 (177)
29 3rgz_A Protein brassinosteroid 99.6 1.6E-14 5.5E-19 140.6 14.3 146 4-153 457-674 (768)
30 4g8a_A TOLL-like receptor 4; l 99.6 1.6E-14 5.6E-19 136.4 13.9 139 1-145 42-183 (635)
31 1p9a_G Platelet glycoprotein I 99.6 6.1E-14 2.1E-18 121.1 16.3 115 2-120 22-136 (290)
32 2xwt_C Thyrotropin receptor; s 99.6 2.2E-14 7.4E-19 120.1 13.1 111 9-121 51-169 (239)
33 2id5_A Lingo-1, leucine rich r 99.6 3.6E-14 1.2E-18 130.4 15.7 115 7-121 50-165 (477)
34 3vq2_A TLR4, TOLL-like recepto 99.6 1.4E-14 4.9E-19 136.8 13.4 115 8-122 51-167 (606)
35 3zyj_A Leucine-rich repeat-con 99.6 4.4E-14 1.5E-18 128.8 15.1 114 8-121 83-198 (440)
36 1p9a_G Platelet glycoprotein I 99.6 5.6E-14 1.9E-18 121.4 14.8 143 6-154 48-190 (290)
37 4g8a_A TOLL-like receptor 4; l 99.6 3.1E-14 1.1E-18 134.4 13.7 123 1-123 63-188 (635)
38 3t6q_A CD180 antigen; protein- 99.5 8.6E-14 2.9E-18 131.5 16.3 138 2-145 24-163 (606)
39 1xku_A Decorin; proteoglycan, 99.5 1.8E-13 6.2E-18 119.9 17.3 115 2-121 43-158 (330)
40 3vq2_A TLR4, TOLL-like recepto 99.5 2E-14 6.7E-19 135.9 11.9 149 2-154 388-539 (606)
41 2xot_A Amphoterin-induced prot 99.5 7.9E-14 2.7E-18 124.0 14.7 149 1-153 29-180 (361)
42 3zyi_A Leucine-rich repeat-con 99.5 1.3E-13 4.4E-18 126.1 16.3 115 7-121 93-209 (452)
43 2ell_A Acidic leucine-rich nuc 99.5 1.9E-14 6.5E-19 114.0 9.0 136 11-153 22-164 (168)
44 2je0_A Acidic leucine-rich nuc 99.5 1.1E-14 3.8E-19 113.0 7.5 127 12-143 16-148 (149)
45 4eco_A Uncharacterized protein 99.5 1.6E-14 5.5E-19 137.8 9.1 136 5-145 239-387 (636)
46 2z66_A Variable lymphocyte rec 99.5 4.7E-14 1.6E-18 122.2 11.3 143 6-153 71-216 (306)
47 2z7x_B TOLL-like receptor 1, v 99.5 4.8E-14 1.6E-18 130.9 12.0 138 1-147 11-150 (520)
48 2id5_A Lingo-1, leucine rich r 99.5 1.9E-13 6.3E-18 125.7 15.6 140 1-145 22-162 (477)
49 4eco_A Uncharacterized protein 99.5 7.1E-15 2.4E-19 140.2 6.3 144 3-152 196-369 (636)
50 2z80_A TOLL-like receptor 2, v 99.5 5E-14 1.7E-18 124.7 11.2 113 8-121 71-187 (353)
51 4ezg_A Putative uncharacterize 99.5 5.6E-14 1.9E-18 114.3 10.5 135 2-145 56-191 (197)
52 3v47_A TOLL-like receptor 5B a 99.5 6.6E-14 2.3E-18 127.7 12.0 138 12-152 274-412 (455)
53 3o6n_A APL1; leucine-rich repe 99.5 1.6E-13 5.6E-18 122.9 13.6 119 2-121 57-178 (390)
54 4ecn_A Leucine-rich repeat pro 99.5 2.3E-14 7.8E-19 140.8 8.4 116 5-121 440-586 (876)
55 3zyj_A Leucine-rich repeat-con 99.5 5.3E-13 1.8E-17 121.6 16.8 117 1-119 54-171 (440)
56 3v47_A TOLL-like receptor 5B a 99.5 1.6E-13 5.4E-18 125.2 13.1 137 2-145 22-164 (455)
57 1h6u_A Internalin H; cell adhe 99.5 6E-13 2.1E-17 115.8 15.7 137 2-152 53-189 (308)
58 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 2E-13 6.8E-18 128.2 13.4 137 1-146 42-180 (562)
59 4ecn_A Leucine-rich repeat pro 99.5 8.6E-14 2.9E-18 136.7 11.2 141 5-152 481-635 (876)
60 1dce_A Protein (RAB geranylger 99.5 8.1E-14 2.8E-18 131.2 10.4 124 14-141 442-566 (567)
61 2z63_A TOLL-like receptor 4, v 99.5 2.3E-13 8E-18 127.3 13.6 114 8-121 47-162 (570)
62 3zyi_A Leucine-rich repeat-con 99.5 6.8E-13 2.3E-17 121.3 16.3 116 2-119 66-182 (452)
63 2z81_A CD282 antigen, TOLL-lik 99.5 9.6E-14 3.3E-18 129.5 10.8 116 7-122 44-162 (549)
64 3oja_B Anopheles plasmodium-re 99.5 2.6E-13 9E-18 128.4 13.5 119 3-122 64-185 (597)
65 1w8a_A SLIT protein; signaling 99.5 5.1E-13 1.7E-17 108.3 13.3 126 15-146 10-137 (192)
66 2z81_A CD282 antigen, TOLL-lik 99.5 2.1E-13 7E-18 127.3 12.4 142 1-146 16-159 (549)
67 1ziw_A TOLL-like receptor 3; i 99.5 1.6E-13 5.5E-18 131.4 12.0 113 9-121 45-158 (680)
68 3g39_A Variable lymphocyte rec 99.5 3E-13 1E-17 107.6 11.2 114 14-130 10-124 (170)
69 3t6q_A CD180 antigen; protein- 99.5 7.2E-13 2.5E-17 125.1 15.6 118 3-121 267-389 (606)
70 4b8c_D Glucose-repressible alc 99.5 7.4E-14 2.5E-18 135.1 9.0 138 5-145 216-369 (727)
71 2wfh_A SLIT homolog 2 protein 99.5 9.3E-13 3.2E-17 106.9 13.9 125 15-145 12-136 (193)
72 2ell_A Acidic leucine-rich nuc 99.5 8.7E-14 3E-18 110.1 7.4 114 4-121 40-160 (168)
73 1wwl_A Monocyte differentiatio 99.5 3.4E-14 1.2E-18 123.8 5.5 136 11-146 93-239 (312)
74 2ft3_A Biglycan; proteoglycan, 99.5 9.5E-13 3.3E-17 115.4 14.7 115 2-121 45-160 (332)
75 1xeu_A Internalin C; cellular 99.5 5.5E-13 1.9E-17 113.5 12.6 134 3-151 32-165 (263)
76 2ft3_A Biglycan; proteoglycan, 99.5 7.4E-13 2.5E-17 116.1 13.6 141 2-152 66-209 (332)
77 3o6n_A APL1; leucine-rich repe 99.5 2.7E-12 9.1E-17 115.0 17.5 116 2-120 81-198 (390)
78 1a9n_A U2A', U2A'; complex (nu 99.5 1.7E-13 5.9E-18 109.4 8.5 130 9-146 15-151 (176)
79 2z63_A TOLL-like receptor 4, v 99.5 9E-13 3.1E-17 123.3 14.7 140 1-146 18-160 (570)
80 3j0a_A TOLL-like receptor 5; m 99.4 4.4E-13 1.5E-17 131.7 13.0 117 2-121 16-136 (844)
81 1h6t_A Internalin B; cell adhe 99.4 8.9E-13 3E-17 113.8 13.5 137 2-152 58-194 (291)
82 1xku_A Decorin; proteoglycan, 99.4 8E-13 2.7E-17 115.7 13.1 142 2-153 112-257 (330)
83 1h6t_A Internalin B; cell adhe 99.4 7.4E-13 2.5E-17 114.3 12.7 132 2-146 80-211 (291)
84 2xot_A Amphoterin-induced prot 99.4 7.4E-13 2.5E-17 117.7 12.9 120 2-122 51-177 (361)
85 1m9s_A Internalin B; cell inva 99.4 1.1E-12 3.9E-17 124.2 14.8 137 2-152 55-191 (605)
86 1h6u_A Internalin H; cell adhe 99.4 1.2E-12 4.2E-17 113.8 13.8 137 2-152 75-211 (308)
87 2z7x_B TOLL-like receptor 1, v 99.4 9.3E-13 3.2E-17 122.2 13.8 138 10-154 321-462 (520)
88 3j0a_A TOLL-like receptor 5; m 99.4 7E-13 2.4E-17 130.3 13.5 143 2-146 36-185 (844)
89 1wwl_A Monocyte differentiatio 99.4 2.4E-13 8.3E-18 118.4 9.0 146 4-153 110-270 (312)
90 2r9u_A Variable lymphocyte rec 99.4 8.2E-13 2.8E-17 105.5 11.2 112 15-130 14-127 (174)
91 3oja_B Anopheles plasmodium-re 99.4 3.2E-12 1.1E-16 121.0 17.0 116 2-120 87-204 (597)
92 2je0_A Acidic leucine-rich nuc 99.4 1.3E-13 4.3E-18 107.0 5.4 111 4-116 33-148 (149)
93 2z80_A TOLL-like receptor 2, v 99.4 2.4E-13 8.3E-18 120.2 7.5 144 2-150 88-236 (353)
94 1ziw_A TOLL-like receptor 3; i 99.4 1.9E-12 6.4E-17 124.0 14.2 119 1-122 15-135 (680)
95 2xwt_C Thyrotropin receptor; s 99.4 1.2E-12 4.1E-17 109.4 11.2 146 2-153 68-222 (239)
96 1xeu_A Internalin C; cellular 99.4 1.6E-12 5.4E-17 110.7 11.8 131 2-146 53-183 (263)
97 4fmz_A Internalin; leucine ric 99.4 1.5E-12 5.3E-17 114.5 12.0 139 2-153 189-328 (347)
98 3bz5_A Internalin-J, INLJ; leu 99.4 6.7E-12 2.3E-16 115.1 16.0 103 9-121 144-246 (457)
99 4b8c_D Glucose-repressible alc 99.4 7.6E-14 2.6E-18 135.1 2.9 118 2-121 236-354 (727)
100 3oja_A Leucine-rich immune mol 99.4 1.5E-12 5.2E-17 120.3 11.5 105 8-121 53-157 (487)
101 4fmz_A Internalin; leucine ric 99.4 5.6E-12 1.9E-16 110.9 14.1 112 3-121 57-168 (347)
102 1m9s_A Internalin B; cell inva 99.4 3.3E-12 1.1E-16 121.1 13.2 132 2-146 77-208 (605)
103 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 4.4E-12 1.5E-16 119.0 13.8 138 10-154 350-491 (562)
104 2ast_B S-phase kinase-associat 99.4 1.9E-13 6.6E-18 119.7 3.5 110 9-118 89-205 (336)
105 3o53_A Protein LRIM1, AGAP0063 99.4 3.8E-12 1.3E-16 111.0 11.3 117 3-121 47-182 (317)
106 4glp_A Monocyte differentiatio 99.4 2E-12 6.7E-17 112.4 9.3 137 9-153 141-289 (310)
107 3bz5_A Internalin-J, INLJ; leu 99.3 4.7E-12 1.6E-16 116.2 12.0 100 9-119 166-265 (457)
108 2o6r_A Variable lymphocyte rec 99.3 2E-11 6.9E-16 97.2 14.1 127 14-146 8-135 (177)
109 1a9n_A U2A', U2A'; complex (nu 99.3 1.3E-12 4.5E-17 104.2 7.0 115 2-121 31-153 (176)
110 2ast_B S-phase kinase-associat 99.3 3.3E-13 1.1E-17 118.2 3.5 139 5-147 110-259 (336)
111 3cvr_A Invasion plasmid antige 99.3 2.2E-11 7.5E-16 114.5 16.1 103 2-121 71-173 (571)
112 1ds9_A Outer arm dynein; leuci 99.3 5.4E-15 1.9E-19 120.5 -7.9 113 5-122 40-154 (198)
113 4glp_A Monocyte differentiatio 99.3 1.6E-12 5.5E-17 113.0 7.2 147 5-154 107-269 (310)
114 1jl5_A Outer protein YOPM; leu 99.3 2.6E-11 8.8E-16 111.1 14.8 108 2-121 143-250 (454)
115 1dce_A Protein (RAB geranylger 99.3 3.3E-12 1.1E-16 120.2 8.8 112 1-115 452-567 (567)
116 1jl5_A Outer protein YOPM; leu 99.3 5.9E-11 2E-15 108.8 16.5 101 37-152 131-231 (454)
117 1o6v_A Internalin A; bacterial 99.3 3.3E-11 1.1E-15 110.5 14.7 125 9-145 217-341 (466)
118 3cvr_A Invasion plasmid antige 99.3 3.7E-11 1.3E-15 112.9 15.1 119 12-153 99-224 (571)
119 1o6v_A Internalin A; bacterial 99.3 2.3E-11 7.9E-16 111.5 13.2 131 3-146 234-364 (466)
120 3o53_A Protein LRIM1, AGAP0063 99.3 1.5E-11 5.1E-16 107.2 11.0 132 12-153 98-231 (317)
121 2r9u_A Variable lymphocyte rec 99.3 2.2E-11 7.5E-16 97.1 10.8 95 1-97 23-118 (174)
122 3g39_A Variable lymphocyte rec 99.3 2.7E-11 9.3E-16 96.2 11.2 97 1-99 20-117 (170)
123 3oja_A Leucine-rich immune mol 99.3 2.5E-11 8.7E-16 112.1 11.4 131 13-153 99-231 (487)
124 2ifg_A High affinity nerve gro 99.2 2.7E-11 9.2E-16 106.7 10.6 107 16-125 11-120 (347)
125 4ay9_X Follicle-stimulating ho 99.2 8.3E-11 2.8E-15 103.9 13.1 91 2-95 21-115 (350)
126 3g06_A SSPH2 (leucine-rich rep 99.2 1.8E-10 6E-15 109.5 16.0 60 2-70 52-111 (622)
127 4ay9_X Follicle-stimulating ho 99.2 1.3E-10 4.4E-15 102.7 13.1 151 1-155 41-197 (350)
128 3g06_A SSPH2 (leucine-rich rep 99.2 2.3E-10 7.8E-15 108.7 15.6 119 2-145 73-191 (622)
129 2ifg_A High affinity nerve gro 99.1 4.2E-10 1.4E-14 99.0 10.8 95 1-98 20-117 (347)
130 1ds9_A Outer arm dynein; leuci 99.1 3.1E-13 1.1E-17 109.9 -8.9 127 14-146 24-151 (198)
131 2ca6_A RAN GTPase-activating p 99.0 2.4E-11 8.1E-16 108.7 0.1 65 8-72 55-134 (386)
132 2ca6_A RAN GTPase-activating p 99.0 6.6E-11 2.3E-15 105.8 2.6 143 5-150 114-288 (386)
133 3goz_A Leucine-rich repeat-con 99.0 3.8E-11 1.3E-15 106.5 0.2 113 9-121 18-151 (362)
134 3goz_A Leucine-rich repeat-con 98.9 3.2E-10 1.1E-14 100.6 2.7 129 17-145 2-148 (362)
135 1z7x_W Ribonuclease inhibitor; 98.9 1.2E-10 4.1E-15 106.1 -1.0 110 37-146 199-324 (461)
136 1z7x_W Ribonuclease inhibitor; 98.9 6.6E-11 2.3E-15 107.8 -3.6 110 36-145 255-380 (461)
137 3ogk_B Coronatine-insensitive 98.7 9.2E-09 3.2E-13 96.5 4.6 86 35-121 218-306 (592)
138 3sb4_A Hypothetical leucine ri 98.7 1.6E-07 5.5E-12 82.0 11.4 57 59-117 225-283 (329)
139 4fdw_A Leucine rich hypothetic 98.6 1.5E-06 5.3E-11 78.1 16.1 100 14-120 158-283 (401)
140 3un9_A NLR family member X1; l 98.4 2.2E-08 7.4E-13 89.3 -0.4 134 12-146 100-250 (372)
141 3un9_A NLR family member X1; l 98.4 1.2E-08 4E-13 91.1 -2.9 134 12-146 71-222 (372)
142 2p1m_B Transport inhibitor res 98.4 3.1E-08 1.1E-12 92.9 -0.2 108 11-118 103-221 (594)
143 3ogk_B Coronatine-insensitive 98.4 1.2E-07 4.3E-12 88.8 3.5 60 57-117 217-279 (592)
144 1io0_A Tropomodulin; LRR prote 98.4 1.1E-07 3.7E-12 76.3 2.2 89 33-121 32-136 (185)
145 3sb4_A Hypothetical leucine ri 98.4 1.5E-06 5.2E-11 75.7 9.8 107 12-121 201-310 (329)
146 2p1m_B Transport inhibitor res 98.3 3E-08 1E-12 93.0 -3.1 136 9-146 62-222 (594)
147 4fdw_A Leucine rich hypothetic 98.1 2.2E-05 7.5E-10 70.5 12.5 112 2-117 168-309 (401)
148 2ra8_A Uncharacterized protein 98.1 2E-06 6.7E-11 76.3 4.8 173 6-183 132-327 (362)
149 3e4g_A ATP synthase subunit S, 98.1 2E-06 6.7E-11 68.2 3.9 82 37-118 61-149 (176)
150 3rw6_A Nuclear RNA export fact 98.1 2.1E-06 7E-11 72.8 4.0 80 34-115 167-258 (267)
151 3e4g_A ATP synthase subunit S, 98.0 4.4E-06 1.5E-10 66.2 3.7 99 51-152 52-156 (176)
152 1io0_A Tropomodulin; LRR prote 98.0 8E-07 2.7E-11 71.2 -0.6 113 9-121 32-164 (185)
153 2ra8_A Uncharacterized protein 98.0 2.2E-06 7.4E-11 76.0 2.1 109 10-121 169-292 (362)
154 3rw6_A Nuclear RNA export fact 97.9 5.6E-06 1.9E-10 70.2 3.7 81 42-124 148-236 (267)
155 4fs7_A Uncharacterized protein 97.5 0.0016 5.6E-08 57.8 13.8 88 79-175 292-390 (394)
156 4fs7_A Uncharacterized protein 97.4 0.0014 4.8E-08 58.2 11.7 60 8-69 157-217 (394)
157 4gt6_A Cell surface protein; l 97.3 0.0022 7.6E-08 56.9 11.9 107 8-120 260-369 (394)
158 4h09_A Hypothetical leucine ri 97.3 0.0055 1.9E-07 53.9 14.2 80 33-116 236-318 (379)
159 4h09_A Hypothetical leucine ri 97.2 0.0018 6E-08 57.1 10.3 102 9-115 236-340 (379)
160 1pgv_A TMD-1, tropomodulin TMD 96.5 0.0016 5.4E-08 52.4 3.6 83 35-117 39-135 (197)
161 3rfe_A Platelet glycoprotein I 96.4 0.006 2.1E-07 45.5 6.0 33 38-70 32-65 (130)
162 3rfe_A Platelet glycoprotein I 96.3 0.0083 2.8E-07 44.7 6.3 49 75-125 24-72 (130)
163 4gt6_A Cell surface protein; l 96.3 0.0098 3.3E-07 52.7 7.5 104 8-119 283-389 (394)
164 1pgv_A TMD-1, tropomodulin TMD 93.2 0.029 1E-06 44.9 1.6 89 56-145 37-136 (197)
165 2lz0_A Uncharacterized protein 50.6 22 0.00077 24.4 4.4 37 56-93 16-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=9.2e-19 Score=154.13 Aligned_cols=164 Identities=25% Similarity=0.437 Sum_probs=135.7
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVS 81 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 81 (276)
++.+|+.+.++++|++|++++|. +..+|..++.+++|++|++++|.++.+|..++.+++|++|++++|...+.+|..++
T Consensus 93 l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 93 LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLA 171 (328)
T ss_dssp CSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSE
T ss_pred chhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHh
Confidence 66789989999999999999995 55899999999999999999999999999999999999999999999999998776
Q ss_pred C---------CCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCcccc
Q 044234 82 S---------LKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILS 152 (276)
Q Consensus 82 ~---------l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~ 152 (276)
. +++|++|++++|... .+|..++.+++|++|++++|.+++....+..+ ++|++|++++|.....++
T Consensus 172 ~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l----~~L~~L~Ls~n~~~~~~p 246 (328)
T 4fcg_A 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHL----PKLEELDLRGCTALRNYP 246 (328)
T ss_dssp EEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGC----TTCCEEECTTCTTCCBCC
T ss_pred hccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccC----CCCCEEECcCCcchhhhH
Confidence 5 999999999997554 88988999999999999999987544444433 467999999988877776
Q ss_pred chhhhcccCCCCc-ceeecCCCcc
Q 044234 153 DVLKLNEHRLPSL-SLYCVDCSKL 175 (276)
Q Consensus 153 ~~~~~~~~~~~~l-~l~~~~c~~L 175 (276)
.. ...+..+ .|++.+|..+
T Consensus 247 ~~----~~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 247 PI----FGGRAPLKRLILKDCSNL 266 (328)
T ss_dssp CC----TTCCCCCCEEECTTCTTC
T ss_pred HH----hcCCCCCCEEECCCCCch
Confidence 52 2223333 4566777654
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.74 E-value=1.3e-17 Score=146.79 Aligned_cols=164 Identities=24% Similarity=0.372 Sum_probs=115.7
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCC-ceecCccccC---------CCCCcEEecCCCC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTA-IRELPVSIEL---------LSGLVLLNLKDCR 71 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~-i~~lp~~i~~---------l~~L~~L~L~~~~ 71 (276)
++.+|..++++++|++|++++|. ++.+|..++.+++|++|++++|. +..+|..++. +++|++|++++|.
T Consensus 116 l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~ 194 (328)
T 4fcg_A 116 LMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG 194 (328)
T ss_dssp CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC
T ss_pred ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC
Confidence 45678778888888888888884 45788888888888888888854 4466766554 8888888888874
Q ss_pred CCCcccccCCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCccc
Q 044234 72 NLSTLPITVSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEIL 151 (276)
Q Consensus 72 ~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~ 151 (276)
. ..+|..++.+++|++|++++|... .+|..++.+++|++|++++|.+.+..+. .+..+ ++|+.|++++|..++.+
T Consensus 195 l-~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~--~~~~l-~~L~~L~L~~n~~~~~~ 269 (328)
T 4fcg_A 195 I-RSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPP--IFGGR-APLKRLILKDCSNLLTL 269 (328)
T ss_dssp C-CCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCC--CTTCC-CCCCEEECTTCTTCCBC
T ss_pred c-CcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHH--HhcCC-CCCCEEECCCCCchhhc
Confidence 4 477888888888888888886544 5666788888888888888776643322 12222 46788888888777777
Q ss_pred cchhhhcccCCCCc-ceeecCCCcc
Q 044234 152 SDVLKLNEHRLPSL-SLYCVDCSKL 175 (276)
Q Consensus 152 ~~~~~~~~~~~~~l-~l~~~~c~~L 175 (276)
+.. ...+..+ .|++.+|..+
T Consensus 270 p~~----~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 270 PLD----IHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp CTT----GGGCTTCCEEECTTCTTC
T ss_pred chh----hhcCCCCCEEeCCCCCch
Confidence 653 2233333 4566676654
No 3
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.66 E-value=2.4e-15 Score=125.50 Aligned_cols=139 Identities=21% Similarity=0.280 Sum_probs=111.8
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccccC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPITV 80 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~ 80 (276)
++.+|..+ .++|++|++++|...+..|..+..+++|++|++++|.++.+|.. +..+++|++|+|++|......+..+
T Consensus 31 l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 108 (229)
T 3e6j_A 31 HASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF 108 (229)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHh
Confidence 67788766 48999999999976666688899999999999999999999765 7899999999999996665555567
Q ss_pred CCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCC
Q 044234 81 SSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 81 ~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~ 146 (276)
..+++|+.|++++|. +..+|..+..+++|+.|++++|.++.... ..+..+ ++|+.|++.+.+
T Consensus 109 ~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l-~~L~~L~l~~N~ 170 (229)
T 3e6j_A 109 DRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPH--GAFDRL-SSLTHAYLFGNP 170 (229)
T ss_dssp TTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCT--TTTTTC-TTCCEEECTTSC
T ss_pred CcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCH--HHHhCC-CCCCEEEeeCCC
Confidence 889999999999965 55889889999999999999998874332 122223 467788887753
No 4
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=1.2e-15 Score=126.56 Aligned_cols=140 Identities=19% Similarity=0.175 Sum_probs=111.0
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCCcccccC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLSTLPITV 80 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~~ 80 (276)
++.+|..+. ++|+.|++++|......+..+..+++|++|++++|.|+.+ |..+..+++|++|+|++|......+..+
T Consensus 23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f 100 (220)
T 2v9t_B 23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100 (220)
T ss_dssp CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTT
T ss_pred cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHc
Confidence 677887664 7899999999955444455788999999999999999988 6679999999999999996554333446
Q ss_pred CCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCC
Q 044234 81 SSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 81 ~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~ 146 (276)
..+++|++|++++|...+..|..+..+++|+.|++++|.++..... .+..+ ++|+.|++++.+
T Consensus 101 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l-~~L~~L~L~~N~ 163 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG--TFSPL-RAIQTMHLAQNP 163 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT--TTTTC-TTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH--HHhCC-CCCCEEEeCCCC
Confidence 8899999999999887777778899999999999999998744332 12222 467889988764
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.65 E-value=5.8e-16 Score=135.21 Aligned_cols=138 Identities=21% Similarity=0.328 Sum_probs=117.1
Q ss_pred ccCcccCCCCCCCEEeecC-CCCCCccccccCCCCCCcEEEccCCCce-ecCccccCCCCCcEEecCCCCCCCcccccCC
Q 044234 4 SLPRNISGLKSLSTLNLSG-TSKFREFPEITGRMEHLSNLHLEGTAIR-ELPVSIELLSGLVLLNLKDCRNLSTLPITVS 81 (276)
Q Consensus 4 ~LP~~l~~l~~L~~L~Ls~-~~~l~~~p~~~~~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 81 (276)
.+|+.+.++++|++|++++ |...+.+|..++++++|++|++++|.++ .+|..++.+++|++|++++|...+.+|..+.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 5788899999999999995 7666788999999999999999999998 7788899999999999999988878999999
Q ss_pred CCCCCCEEeeeCCCCCCcCccccCCCC-CCCeeeccCccccccCc-ccccCCCCCCCccEEeccCCC
Q 044234 82 SLKCLRTLKLSGCSKIVKFPESVISME-DLSELFLDRTSITEECK-MLQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~lp~~l~~l~-~L~~L~L~~n~i~~~~~-~L~~L~~L~~~L~~L~~~~c~ 146 (276)
.+++|++|++++|...+.+|..++.+. +|++|++++|.+++... .+..+ .|+.|+++++.
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-----~L~~L~Ls~N~ 208 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-----NLAFVDLSRNM 208 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-----CCSEEECCSSE
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-----cccEEECcCCc
Confidence 999999999999887778999899988 89999999999874333 23332 27888888874
No 6
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.64 E-value=4.9e-15 Score=122.90 Aligned_cols=131 Identities=18% Similarity=0.227 Sum_probs=91.3
Q ss_pred CEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCc-cccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeCC
Q 044234 16 STLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPV-SIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSGC 94 (276)
Q Consensus 16 ~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~ 94 (276)
+.++.+++ .++.+|..+. +++++|++++|.|+.++. .+..+++|+.|++++|......|..+.++++|++|++++|
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56777776 5667776554 678888888888888765 4788888888888888766666778888888888888886
Q ss_pred CCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCccccc
Q 044234 95 SKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILSD 153 (276)
Q Consensus 95 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~~ 153 (276)
......+..+..+++|+.|++++|.++..... .+..+ ++|+.|+++++ .++.++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~--~~~~l-~~L~~L~L~~N-~l~~~~~ 145 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVD--AFQDL-HNLNLLSLYDN-KLQTIAK 145 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--TTTTC-TTCCEEECCSS-CCSCCCT
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHH--HcCCC-CCCCEEECCCC-cCCEECH
Confidence 54433334467788888888888887643221 12222 46788888876 3555544
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=8.3e-15 Score=123.72 Aligned_cols=146 Identities=19% Similarity=0.169 Sum_probs=115.1
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccccC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPITV 80 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~ 80 (276)
++.+|..+. ++++.|++++|...+..+..+..+++|++|++++|.++.++.. +..+++|++|++++|......+..+
T Consensus 26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 103 (251)
T 3m19_A 26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVF 103 (251)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHh
Confidence 677887664 6899999999976666667889999999999999999988655 8999999999999997666666678
Q ss_pred CCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCccccc
Q 044234 81 SSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILSD 153 (276)
Q Consensus 81 ~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~~ 153 (276)
..+++|++|++++|...+..+..+..+++|++|++++|.++..... .+..+ ++|+.|+++++ .++.++.
T Consensus 104 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l-~~L~~L~L~~N-~l~~~~~ 172 (251)
T 3m19_A 104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG--AFDKL-TNLQTLSLSTN-QLQSVPH 172 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--TTTTC-TTCCEEECCSS-CCSCCCT
T ss_pred cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHH--HcCcC-cCCCEEECCCC-cCCccCH
Confidence 8999999999999866544445578899999999999988743331 12223 57899999987 4565554
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.63 E-value=8.9e-16 Score=134.05 Aligned_cols=139 Identities=20% Similarity=0.273 Sum_probs=112.4
Q ss_pred ccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCce-ecCccccCCCCCcEEecCCCCCCCcccccCCC
Q 044234 4 SLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIR-ELPVSIELLSGLVLLNLKDCRNLSTLPITVSS 82 (276)
Q Consensus 4 ~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~ 82 (276)
.+|..+.++++|++|++++|...+.+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|...+.+|..++.
T Consensus 92 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 171 (313)
T 1ogq_A 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171 (313)
T ss_dssp CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh
Confidence 57888899999999999999666688998999999999999999998 67888999999999999999877788988888
Q ss_pred CC-CCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCC
Q 044234 83 LK-CLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 83 l~-~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~ 146 (276)
++ +|++|++++|...+.+|..+..+. |+.|++++|.+++.... .+..+ ++|+.|+++++.
T Consensus 172 l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~--~~~~l-~~L~~L~L~~N~ 232 (313)
T 1ogq_A 172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV--LFGSD-KNTQKIHLAKNS 232 (313)
T ss_dssp CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG--GCCTT-SCCSEEECCSSE
T ss_pred hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH--HHhcC-CCCCEEECCCCc
Confidence 88 899999999877778888888776 88888888887643321 12222 456677776653
No 9
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=7.6e-15 Score=123.95 Aligned_cols=142 Identities=21% Similarity=0.201 Sum_probs=112.6
Q ss_pred CCccCc-ccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCccccc
Q 044234 2 LKSLPR-NISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPIT 79 (276)
Q Consensus 2 L~~LP~-~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~ 79 (276)
++.++. .+.++++|++|++++|...+..+..+..+++|++|++++|.++.++.. ++.+++|++|++++|......+..
T Consensus 47 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 126 (251)
T 3m19_A 47 LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV 126 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhH
Confidence 344443 588899999999999976666677789999999999999999998765 799999999999999665544555
Q ss_pred CCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCC
Q 044234 80 VSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~ 146 (276)
+..+++|++|++++|...+..+..++.+++|+.|++++|.++..... .+..+ ++|+.|++++++
T Consensus 127 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l-~~L~~L~l~~N~ 190 (251)
T 3m19_A 127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG--AFDRL-GKLQTITLFGNQ 190 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT--TTTTC-TTCCEEECCSCC
T ss_pred hccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH--HHhCC-CCCCEEEeeCCc
Confidence 78899999999999866555555789999999999999998743321 12222 467888888764
No 10
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=2.4e-15 Score=122.16 Aligned_cols=121 Identities=24% Similarity=0.341 Sum_probs=81.3
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCcccc--ccCCCCCCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCCcccc
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPE--ITGRMEHLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLSTLPI 78 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~--~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~ 78 (276)
|+.+|..+. .+|++|++++|. ++.++. .++.+++|++|++++|.|+.+ |..++.+++|++|++++|...+..+.
T Consensus 20 l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 96 (192)
T 1w8a_A 20 LKEIPRDIP--LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96 (192)
T ss_dssp CSSCCSCCC--TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred cCcCccCCC--CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHH
Confidence 456666553 377777777773 344433 366777777777777777766 44577777777777777765555555
Q ss_pred cCCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCc
Q 044234 79 TVSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECK 125 (276)
Q Consensus 79 ~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~ 125 (276)
.+.++++|++|++++|...+..|..+..+++|++|++++|++.+.|.
T Consensus 97 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 56777777777777776666666667777777777777777765553
No 11
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=1.1e-14 Score=124.27 Aligned_cols=140 Identities=20% Similarity=0.239 Sum_probs=64.3
Q ss_pred cCCCCCCCEEeecCCCCCCccc-cccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccccCCCCCCC
Q 044234 9 ISGLKSLSTLNLSGTSKFREFP-EITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPITVSSLKCL 86 (276)
Q Consensus 9 l~~l~~L~~L~Ls~~~~l~~~p-~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L 86 (276)
|.++++|++|++++|. ++.+| ..+..+++|++|++++|.++.+|.. +..+++|++|++++|......+..+..+++|
T Consensus 57 ~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 135 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135 (270)
T ss_dssp SSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC
Confidence 4444555555555542 22222 2234455555555555555544432 3445555555555544333333344455555
Q ss_pred CEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCccccc
Q 044234 87 RTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILSD 153 (276)
Q Consensus 87 ~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~~ 153 (276)
++|++++|...+..+..+..+++|+.|++++|.++..... .+..+ ++|+.|+++++ .++.++.
T Consensus 136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l-~~L~~L~L~~N-~l~~~~~ 198 (270)
T 2o6q_A 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG--AFDKL-TELKTLKLDNN-QLKRVPE 198 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT--TTTTC-TTCCEEECCSS-CCSCCCT
T ss_pred CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh--HhccC-CCcCEEECCCC-cCCcCCH
Confidence 5555555433322222345555555555555554422111 11112 45677777766 4555544
No 12
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.63 E-value=2.5e-15 Score=124.74 Aligned_cols=139 Identities=19% Similarity=0.181 Sum_probs=111.1
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccc-cccCCCCCCcEEEccCCCceecCc-cccCCCCCcEEecCCCCCCCccccc
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFP-EITGRMEHLSNLHLEGTAIRELPV-SIELLSGLVLLNLKDCRNLSTLPIT 79 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p-~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~ 79 (276)
++.+|..+ ...+++|++++|......+ ..+..+++|++|++++|.|+.++. .++.+++|++|++++|...+..+..
T Consensus 23 l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 100 (220)
T 2v70_A 23 LNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKM 100 (220)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGG
T ss_pred cccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhH
Confidence 56788766 3567899999995443323 457889999999999999998876 5999999999999999777666677
Q ss_pred CCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCc-ccccCCCCCCCccEEeccCCC
Q 044234 80 VSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECK-MLQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~-~L~~L~~L~~~L~~L~~~~c~ 146 (276)
+..+++|++|++++|...+..|..+..+++|+.|++++|.++...+ .+.. + .+|+.|++++++
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---l-~~L~~L~L~~N~ 164 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT---L-HSLSTLNLLANP 164 (220)
T ss_dssp GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT---C-TTCCEEECCSCC
T ss_pred hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC---C-CCCCEEEecCcC
Confidence 8899999999999988777778889999999999999999875422 2332 2 467889988764
No 13
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=4.3e-15 Score=120.83 Aligned_cols=121 Identities=28% Similarity=0.382 Sum_probs=87.7
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCc-cccCCCCCcEEecCCCCCCCcccccC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPV-SIELLSGLVLLNLKDCRNLSTLPITV 80 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~~ 80 (276)
++.+|..+ .++|++|++++| .++.+|..+..+++|++|++++|.|+.++. .|..+++|++|+|++|......|..+
T Consensus 22 l~~ip~~~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f 98 (193)
T 2wfh_A 22 LKVLPKGI--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF 98 (193)
T ss_dssp CSSCCSCC--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CCcCCCCC--CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHh
Confidence 56677655 357888888887 455777777778888888888888887754 47788888888888876665555667
Q ss_pred CCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCc
Q 044234 81 SSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECK 125 (276)
Q Consensus 81 ~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~ 125 (276)
..+++|++|++++|......+..+..+++|+.|++++|++.++|.
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 99 DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 778888888888865443333456777888888888888776664
No 14
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=1.2e-14 Score=120.52 Aligned_cols=131 Identities=16% Similarity=0.151 Sum_probs=99.5
Q ss_pred CCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCc--cccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeee
Q 044234 15 LSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPV--SIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLS 92 (276)
Q Consensus 15 L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~--~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~ 92 (276)
-+.++++++ .++.+|..+. ..+++|++++|.++.++. .++.+++|+.|++++|...+..+..+.++++|++|+++
T Consensus 13 ~~~l~~s~n-~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQ-KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCC-CcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 458888887 5677887664 456899999999998843 37899999999999987666556678899999999999
Q ss_pred CCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCcccc
Q 044234 93 GCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILS 152 (276)
Q Consensus 93 ~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~ 152 (276)
+|...+..+..+..+++|++|++++|.++..... .+..+ .+|+.|+++++ .++.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l-~~L~~L~L~~N-~l~~~~ 145 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGND--SFIGL-SSVRLLSLYDN-QITTVA 145 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT--SSTTC-TTCSEEECTTS-CCCCBC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHh--HcCCC-ccCCEEECCCC-cCCEEC
Confidence 9877666666788999999999999988744221 22223 56789999886 455553
No 15
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=5.9e-15 Score=120.14 Aligned_cols=134 Identities=15% Similarity=0.140 Sum_probs=93.2
Q ss_pred CCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCEE
Q 044234 10 SGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTL 89 (276)
Q Consensus 10 ~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L 89 (276)
..+++|+.|++++| .+..+| .+..+++|++|++++|.++.++ .+..+++|++|++++|......+..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 34567888888887 455666 5667788888888888776654 57778888888888876666667777788888888
Q ss_pred eeeCCCCCCcCccccCCCCCCCeeeccCcc-ccccCcccccCCCCCCCccEEeccCCCCCcccc
Q 044234 90 KLSGCSKIVKFPESVISMEDLSELFLDRTS-ITEECKMLQNLPRLPASIHWILLNGCVSLEILS 152 (276)
Q Consensus 90 ~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~-i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~ 152 (276)
++++|...+..|..++.+++|++|++++|. +. ..+.+..+ ++|+.|++++|. +..++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~~l~~l----~~L~~L~l~~n~-i~~~~ 175 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMPLKTL----PELKSLNIQFDG-VHDYR 175 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCGGGGGC----SSCCEEECTTBC-CCCCT
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccHhhcCC----CCCCEEECCCCC-CcChH
Confidence 888876666667777788888888887776 43 33333332 356778877763 44443
No 16
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=7.7e-15 Score=120.29 Aligned_cols=141 Identities=21% Similarity=0.195 Sum_probs=109.9
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccccC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPITV 80 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~ 80 (276)
++.+|..+ .++|++|++++|...+..+..++.+++|++|++++|.++.++.. ++.+++|++|++++|...+..+..+
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 96 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHh
Confidence 45677655 56899999999965544455678999999999999999999776 7899999999999996665445557
Q ss_pred CCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCC
Q 044234 81 SSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVS 147 (276)
Q Consensus 81 ~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~ 147 (276)
..+++|++|++++|...+..+..+..+++|+.|++++|.+++.... .+..+ ++|+.|++++++-
T Consensus 97 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~--~~~~l-~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG--VFDRL-TSLQYIWLHDNPW 160 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT--TTTTC-TTCCEEECCSCCB
T ss_pred cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH--HhccC-CCccEEEecCCCe
Confidence 8999999999999876655555578999999999999988743332 12222 5789999988643
No 17
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=1.4e-14 Score=123.73 Aligned_cols=119 Identities=24% Similarity=0.242 Sum_probs=86.3
Q ss_pred CccCc-ccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecC-ccccCCCCCcEEecCCCCCCCcccccC
Q 044234 3 KSLPR-NISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELP-VSIELLSGLVLLNLKDCRNLSTLPITV 80 (276)
Q Consensus 3 ~~LP~-~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~~ 80 (276)
+.++. .+.++++|++|++++|...+..+..+..+++|++|++++|.++.++ ..+..+++|++|++++|......+..+
T Consensus 41 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 120 (276)
T 2z62_A 41 RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120 (276)
T ss_dssp CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC
T ss_pred cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhc
Confidence 34443 5667778888888887444334456777788888888888877775 447778888888888876555545567
Q ss_pred CCCCCCCEEeeeCCCCCC-cCccccCCCCCCCeeeccCcccc
Q 044234 81 SSLKCLRTLKLSGCSKIV-KFPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 81 ~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
..+++|++|++++|...+ .+|..+..+++|++|++++|.++
T Consensus 121 ~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 788888888888876554 36778888888888888888776
No 18
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=2.4e-14 Score=122.35 Aligned_cols=144 Identities=21% Similarity=0.213 Sum_probs=112.2
Q ss_pred CccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccccCC
Q 044234 3 KSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPITVS 81 (276)
Q Consensus 3 ~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~~ 81 (276)
+.++. +..+++|++|++++|. +..++ .++.+++|++|++++|.++.++.. ++.+++|++|++++|...+..+..+.
T Consensus 54 ~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 130 (272)
T 3rfs_A 54 KSVQG-IQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD 130 (272)
T ss_dssp CCCTT-GGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred ccccc-cccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhc
Confidence 44443 7789999999999995 44454 678899999999999999988765 78999999999999976666666688
Q ss_pred CCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCccccc
Q 044234 82 SLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILSD 153 (276)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~~ 153 (276)
.+++|++|++++|...+..+..++.+++|+.|++++|.+++..... +..+ ++|+.|++++|. +..++.
T Consensus 131 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l-~~L~~L~L~~N~-l~~~~~ 198 (272)
T 3rfs_A 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV--FDKL-TQLKDLRLYQNQ-LKSVPD 198 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTC-TTCCEEECCSSC-CSCCCT
T ss_pred cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH--hcCC-ccCCEEECCCCc-CCccCH
Confidence 9999999999998766555556789999999999999887433221 2222 578999999874 555554
No 19
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.60 E-value=7.6e-15 Score=127.28 Aligned_cols=141 Identities=19% Similarity=0.201 Sum_probs=112.7
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccc--cccCCCCCCcEEEccCCCceecC-ccccCCCCCcEEecCCCCCCC-ccc
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFP--EITGRMEHLSNLHLEGTAIRELP-VSIELLSGLVLLNLKDCRNLS-TLP 77 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p--~~~~~l~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~L~~~~~l~-~lp 77 (276)
++.+|..+..+++|++|++++|. ++.++ ..+..+++|++|++++|.++..+ ..++.+++|++|++++|...+ .+|
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 34567778889999999999984 44444 47888999999999999998764 458899999999999997665 578
Q ss_pred ccCCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCC
Q 044234 78 ITVSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 78 ~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~ 146 (276)
..+..+++|++|++++|...+..|..+..+++|+.|++++|.+++.... .+..+ ++|+.|+++++.
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l-~~L~~L~L~~N~ 234 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF--PYKCL-NSLQVLDYSLNH 234 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG--GGTTC-TTCCEEECTTSC
T ss_pred hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh--hccCc-ccCCEeECCCCC
Confidence 8899999999999999877776688889999999999999988643221 12222 578999999885
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.60 E-value=3.2e-14 Score=122.14 Aligned_cols=109 Identities=21% Similarity=0.246 Sum_probs=53.3
Q ss_pred CCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCCcc-cccCCCCCCCCEEe
Q 044234 13 KSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLSTL-PITVSSLKCLRTLK 90 (276)
Q Consensus 13 ~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~~L~ 90 (276)
++|++|++++|......+..+..+++|++|++++|.++.+ |..++.+++|++|++++|..++.+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 4555555555532222233445555555555555555544 334555555555555555423322 44445555555555
Q ss_pred eeCCCCCCcCccccCCCCCCCeeeccCcccc
Q 044234 91 LSGCSKIVKFPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 91 l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
+++|...+..|..+..+++|++|++++|.++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 142 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCccc
Confidence 5554444333444455555555555555443
No 21
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=6e-15 Score=123.10 Aligned_cols=127 Identities=21% Similarity=0.280 Sum_probs=106.6
Q ss_pred CCcc-CcccCCCCCCCEEeecCCCCCCccc-cccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccc
Q 044234 2 LKSL-PRNISGLKSLSTLNLSGTSKFREFP-EITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPI 78 (276)
Q Consensus 2 L~~L-P~~l~~l~~L~~L~Ls~~~~l~~~p-~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~ 78 (276)
++.+ |..+..+++|++|++++|. ++.+| ..+..+++|++|++++|.++.++.. +..+++|++|++++|. +..+|.
T Consensus 52 i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~ 129 (229)
T 3e6j_A 52 ITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPR 129 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCT
T ss_pred cCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCc
Confidence 3445 5668889999999999995 45555 5678999999999999999999776 7899999999999995 558899
Q ss_pred cCCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccC
Q 044234 79 TVSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNL 130 (276)
Q Consensus 79 ~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L 130 (276)
.+..+++|++|++++|...+..+..+..+++|+.|++++|++.+.|..+..+
T Consensus 130 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l 181 (229)
T 3e6j_A 130 GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYL 181 (229)
T ss_dssp TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHH
T ss_pred ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHH
Confidence 9999999999999998665444466889999999999999999888654433
No 22
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=3.4e-14 Score=116.45 Aligned_cols=131 Identities=19% Similarity=0.154 Sum_probs=84.8
Q ss_pred CEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeCC
Q 044234 16 STLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSGC 94 (276)
Q Consensus 16 ~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~ 94 (276)
+.++.+++ .++.+|..+ .++|++|++++|.++.++.. ++.+++|++|++++|......+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQ-GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCC-CccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 45666665 455566544 35788888888888877654 677888888888887554433444677888888888886
Q ss_pred CCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCccccc
Q 044234 95 SKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILSD 153 (276)
Q Consensus 95 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~~ 153 (276)
...+..+..+..+++|++|++++|.++..... .+..+ ++|+.|+++++ .++.++.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l-~~L~~L~l~~N-~l~~~~~ 141 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDG--VFDKL-TQLKDLRLYQN-QLKSVPD 141 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--TTTTC-TTCCEEECCSS-CCSCCCT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHh--HhccC-CcCCEEECCCC-ccceeCH
Confidence 65544444567788888888888877633221 11222 46778888776 3555544
No 23
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=3.2e-14 Score=121.40 Aligned_cols=146 Identities=21% Similarity=0.189 Sum_probs=115.0
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccccC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPITV 80 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~ 80 (276)
|+.+|..+. ++++.|++++|......+..+..+++|++|++++|.++.++.. +..+++|++|++++|......+..+
T Consensus 28 l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 105 (270)
T 2o6q_A 28 LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVF 105 (270)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHc
Confidence 667787663 6899999999954444445789999999999999999999876 6889999999999997655555667
Q ss_pred CCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCccccc
Q 044234 81 SSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILSD 153 (276)
Q Consensus 81 ~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~~ 153 (276)
..+++|++|++++|...+..+..+..+++|++|++++|.++..... .+..+ ++|+.|+++++ .++.++.
T Consensus 106 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l-~~L~~L~L~~n-~l~~~~~ 174 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG--VFDKL-TSLKELRLYNN-QLKRVPE 174 (270)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--TTTTC-TTCCEEECCSS-CCSCCCT
T ss_pred ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh--HccCC-cccceeEecCC-cCcEeCh
Confidence 8899999999999877666667789999999999999988743322 12223 57899999887 4555554
No 24
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.58 E-value=6.8e-15 Score=143.25 Aligned_cols=146 Identities=21% Similarity=0.246 Sum_probs=109.2
Q ss_pred ccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCce-ecCccccCCCCCcEEecCCCCCCCccccc---
Q 044234 4 SLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIR-ELPVSIELLSGLVLLNLKDCRNLSTLPIT--- 79 (276)
Q Consensus 4 ~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~--- 79 (276)
.+|..+.++++|++|++++|...+.+|..++.+++|++|++++|.++ .+|..++.+++|++|++++|...+.+|..
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 46777888889999999998777788888888888999999988887 66777888888888888888766555532
Q ss_pred -------------------------------------------------------------------CCCCCCCCEEeee
Q 044234 80 -------------------------------------------------------------------VSSLKCLRTLKLS 92 (276)
Q Consensus 80 -------------------------------------------------------------------~~~l~~L~~L~l~ 92 (276)
++.+++|+.|+++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs 640 (768)
T 3rgz_A 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640 (768)
T ss_dssp TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECc
Confidence 3345677888888
Q ss_pred CCCCCCcCccccCCCCCCCeeeccCccccccCc-ccccCCCCCCCccEEeccCCCCCccccc
Q 044234 93 GCSKIVKFPESVISMEDLSELFLDRTSITEECK-MLQNLPRLPASIHWILLNGCVSLEILSD 153 (276)
Q Consensus 93 ~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~-~L~~L~~L~~~L~~L~~~~c~~L~~~~~ 153 (276)
+|...+.+|..++.+++|+.|++++|.+++..+ .+..+ .+|+.|+++++.--..+|.
T Consensus 641 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L----~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL----RGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp SSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC----TTCCEEECCSSCCEECCCG
T ss_pred CCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC----CCCCEEECCCCcccCcCCh
Confidence 888777888888888888888888888874443 23333 4567777777754445554
No 25
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=4.6e-14 Score=120.59 Aligned_cols=145 Identities=19% Similarity=0.083 Sum_probs=116.3
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCc-cccCCCCCcEEecCCCCCCCcccccC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPV-SIELLSGLVLLNLKDCRNLSTLPITV 80 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~~ 80 (276)
+..+|..+. ++|++|++++|......+..+.++++|++|++++|.++.++. .++.+++|++|++++|...+..+..+
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 566787663 689999999995444445588999999999999999999876 59999999999999997777667889
Q ss_pred CCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCcccccc--CcccccCCCCCCCccEEeccCCCCCccccc
Q 044234 81 SSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEE--CKMLQNLPRLPASIHWILLNGCVSLEILSD 153 (276)
Q Consensus 81 ~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~--~~~L~~L~~L~~~L~~L~~~~c~~L~~~~~ 153 (276)
.++++|++|++++|...+..+..++.+++|++|++++|.++.. ...+..+ ++|+.|+++++. ++.++.
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l----~~L~~L~Ls~N~-l~~~~~ 166 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL----TNLEHLDLSSNK-IQSIYC 166 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC----TTCCEEECCSSC-CCEECG
T ss_pred cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccC----CCCCEEECCCCC-CCcCCH
Confidence 9999999999999876665555789999999999999998641 2233333 577999999874 555543
No 26
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.58 E-value=2.1e-14 Score=123.26 Aligned_cols=148 Identities=23% Similarity=0.289 Sum_probs=117.6
Q ss_pred CCcc-CcccCCCCCCCEEeecCCCCCCcc-ccccCCCCCCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCCcccc
Q 044234 2 LKSL-PRNISGLKSLSTLNLSGTSKFREF-PEITGRMEHLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLSTLPI 78 (276)
Q Consensus 2 L~~L-P~~l~~l~~L~~L~Ls~~~~l~~~-p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~ 78 (276)
++.+ |..+.++++|++|++++|..++.+ |..+..+++|++|++++|.++.+ +..++.+++|++|++++|......+.
T Consensus 68 l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 147 (285)
T 1ozn_A 68 LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh
Confidence 3444 567889999999999999645555 78889999999999999999988 45589999999999999976655556
Q ss_pred cCCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCccccc
Q 044234 79 TVSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILSD 153 (276)
Q Consensus 79 ~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~~ 153 (276)
.+..+++|++|++++|...+..+..+..+++|+.|++++|.+++... ..+..+ ++|+.|+++++ .+..++.
T Consensus 148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l-~~L~~L~l~~n-~l~~~~~ 218 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP--HAFRDL-GRLMTLYLFAN-NLSALPT 218 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT--TTTTTC-TTCCEEECCSS-CCSCCCH
T ss_pred HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH--hHccCc-ccccEeeCCCC-cCCcCCH
Confidence 68899999999999986554444568899999999999999875422 122233 57899999997 4666654
No 27
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=1.5e-14 Score=123.59 Aligned_cols=143 Identities=21% Similarity=0.194 Sum_probs=113.9
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccccC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPITV 80 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~ 80 (276)
++.++ .+..+++|++|++++|...+..+..++.+++|++|++++|.++.++.. ++.+++|++|++++|...+..+..+
T Consensus 75 l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 153 (272)
T 3rfs_A 75 LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF 153 (272)
T ss_dssp CCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh
Confidence 34444 478899999999999965555556678999999999999999998766 7999999999999996665555567
Q ss_pred CCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCC
Q 044234 81 SSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSL 148 (276)
Q Consensus 81 ~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L 148 (276)
..+++|++|++++|...+..+..++.+++|+.|++++|.+++.... .+..+ ++|+.|++++++-.
T Consensus 154 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l-~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 154 DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG--VFDRL-TSLQYIWLHDNPWD 218 (272)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT--TTTTC-TTCCEEECCSSCBC
T ss_pred ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH--HHhCC-cCCCEEEccCCCcc
Confidence 8999999999999877665556678999999999999998754332 12223 57899999887543
No 28
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.2e-14 Score=116.07 Aligned_cols=125 Identities=21% Similarity=0.287 Sum_probs=89.1
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccccC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPITV 80 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~ 80 (276)
++.+|..+ .++|++|++++|...+..+..++.+++|++|++++|.++.++.. ++.+++|++|++++|...+..+..+
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 96 (177)
T 2o6r_A 19 LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVF 96 (177)
T ss_dssp CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHh
Confidence 55666544 46888888888854433344567788888888888888887665 6788888888888886555444556
Q ss_pred CCCCCCCEEeeeCCCCCCcCcc-ccCCCCCCCeeeccCccccccCccccc
Q 044234 81 SSLKCLRTLKLSGCSKIVKFPE-SVISMEDLSELFLDRTSITEECKMLQN 129 (276)
Q Consensus 81 ~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~L~~n~i~~~~~~L~~ 129 (276)
..+++|++|++++|... .+|. .+..+++|++|++++|++.+.|+.+..
T Consensus 97 ~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~ 145 (177)
T 2o6r_A 97 DKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 145 (177)
T ss_dssp TTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred hCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCccHHH
Confidence 77888888888887554 4443 457788888888888888766654433
No 29
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.58 E-value=1.6e-14 Score=140.61 Aligned_cols=146 Identities=17% Similarity=0.176 Sum_probs=121.4
Q ss_pred ccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCce-ecCccccCCCCCcEEecCCCCCCCcccccCCC
Q 044234 4 SLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIR-ELPVSIELLSGLVLLNLKDCRNLSTLPITVSS 82 (276)
Q Consensus 4 ~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~ 82 (276)
.+|..+..+++|++|++++|...+.+|..++.+++|++|++++|.++ .+|..++.+++|++|++++|...+.+|..++.
T Consensus 457 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 536 (768)
T 3rgz_A 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG
T ss_pred cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 57888888999999999999877789999999999999999999998 67888999999999999999888899999999
Q ss_pred CCCCCEEeeeCCCCCCcCcccc----------------------------------------------------------
Q 044234 83 LKCLRTLKLSGCSKIVKFPESV---------------------------------------------------------- 104 (276)
Q Consensus 83 l~~L~~L~l~~~~~~~~lp~~l---------------------------------------------------------- 104 (276)
+++|+.|++++|...+.+|..+
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 616 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence 9999999999987776666433
Q ss_pred ------------CCCCCCCeeeccCccccccCc-ccccCCCCCCCccEEeccCCCCCccccc
Q 044234 105 ------------ISMEDLSELFLDRTSITEECK-MLQNLPRLPASIHWILLNGCVSLEILSD 153 (276)
Q Consensus 105 ------------~~l~~L~~L~L~~n~i~~~~~-~L~~L~~L~~~L~~L~~~~c~~L~~~~~ 153 (276)
+.+++|+.|++++|.+++..+ .+..+ ..|+.|+++++.--..++.
T Consensus 617 ~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l----~~L~~L~Ls~N~l~g~ip~ 674 (768)
T 3rgz_A 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM----PYLFILNLGHNDISGSIPD 674 (768)
T ss_dssp SCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC----TTCCEEECCSSCCCSCCCG
T ss_pred cceecccCchhhhccccccEEECcCCcccccCCHHHhcc----ccCCEEeCcCCccCCCCCh
Confidence 345678899999999985544 24443 4678999999865556666
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.57 E-value=1.6e-14 Score=136.36 Aligned_cols=139 Identities=20% Similarity=0.097 Sum_probs=99.6
Q ss_pred CCCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCccccc
Q 044234 1 NLKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPIT 79 (276)
Q Consensus 1 ~L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~ 79 (276)
+|+++|+.+. +++++|+|++|...+..+..+.++++|++|++++|.|+.+++. |+++++|++|+|++|...+..+..
T Consensus 42 ~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 42 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp CCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred CcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence 3667777653 5788899998854333346788888999999999988888654 888889999999888544433456
Q ss_pred CCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCcccccc--CcccccCCCCCCCccEEeccCC
Q 044234 80 VSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEE--CKMLQNLPRLPASIHWILLNGC 145 (276)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~--~~~L~~L~~L~~~L~~L~~~~c 145 (276)
|.++++|++|++++|...+..+..++++++|++|++++|.++.. ...+..+ ..|++|+++++
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l----~~L~~L~L~~N 183 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL----TNLEHLDLSSN 183 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC----TTCCEEECCSS
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccc----hhhhhhcccCc
Confidence 78888899999988765544445678888899999988887531 1112222 45677777775
No 31
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.57 E-value=6.1e-14 Score=121.14 Aligned_cols=115 Identities=23% Similarity=0.296 Sum_probs=52.2
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVS 81 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 81 (276)
|+.+|..+. ++++.|++++|...+..+..+..+++|++|++++|.++.++.. +.+++|++|++++| .+..+|..+.
T Consensus 22 l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~ 97 (290)
T 1p9a_G 22 LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQ 97 (290)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTT
T ss_pred CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCC-cCCcCchhhc
Confidence 344554432 4555555555543333344455555555555555555544332 44444444444444 2234444444
Q ss_pred CCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccc
Q 044234 82 SLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSI 120 (276)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i 120 (276)
.+++|++|++++|...+..+..+..+++|++|++++|.+
T Consensus 98 ~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 136 (290)
T 1p9a_G 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136 (290)
T ss_dssp TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC
Confidence 444444444444333322223344444444444444444
No 32
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.57 E-value=2.2e-14 Score=120.12 Aligned_cols=111 Identities=12% Similarity=0.201 Sum_probs=49.4
Q ss_pred cCCCCCCCEEeecCCCCCCccc-cccCCCCCCcEEEccC-CCceecCc-cccCCCCCcEEecCCCCCCCcccccCCCCCC
Q 044234 9 ISGLKSLSTLNLSGTSKFREFP-EITGRMEHLSNLHLEG-TAIRELPV-SIELLSGLVLLNLKDCRNLSTLPITVSSLKC 85 (276)
Q Consensus 9 l~~l~~L~~L~Ls~~~~l~~~p-~~~~~l~~L~~L~L~~-n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~ 85 (276)
+.++++|++|++++|..++.++ ..+..+++|++|++++ |.++.++. .+..+++|++|++++|.. ..+|. +..+++
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l-~~lp~-~~~l~~ 128 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPD-LTKVYS 128 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECC-CSCCC-CTTCCB
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCC-ccccc-cccccc
Confidence 4444455555555543233332 2344445555555554 44544432 244455555555554432 22443 444444
Q ss_pred CC---EEeeeCCCCCCcCc-cccCCCCCCC-eeeccCcccc
Q 044234 86 LR---TLKLSGCSKIVKFP-ESVISMEDLS-ELFLDRTSIT 121 (276)
Q Consensus 86 L~---~L~l~~~~~~~~lp-~~l~~l~~L~-~L~L~~n~i~ 121 (276)
|+ +|++++|..++.+| ..+..+++|+ +|++++|.++
T Consensus 129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 44 55555542222222 2344455555 5555555443
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.57 E-value=3.6e-14 Score=130.41 Aligned_cols=115 Identities=17% Similarity=0.259 Sum_probs=76.6
Q ss_pred cccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccccCCCCCC
Q 044234 7 RNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPITVSSLKC 85 (276)
Q Consensus 7 ~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~ 85 (276)
..|.++++|++|++++|...+..|..+.++++|++|++++|.++.+|.. ++++++|++|++++|......|..+..+++
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence 3566677777777777744444466677777777777777777777654 567777777777777665555666666777
Q ss_pred CCEEeeeCCCCCCcCccccCCCCCCCeeeccCcccc
Q 044234 86 LRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 86 L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
|++|++++|...+..+..+..+++|+.|++++|.++
T Consensus 130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred CCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 777777766555555555666666666666666654
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.57 E-value=1.4e-14 Score=136.81 Aligned_cols=115 Identities=23% Similarity=0.223 Sum_probs=73.1
Q ss_pred ccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCCcccccCCCCCCC
Q 044234 8 NISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCL 86 (276)
Q Consensus 8 ~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L 86 (276)
.|.++++|++|++++|...+..|..++++++|++|++++|.++.+ |..|+++++|++|++++|...+..+..++++++|
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence 455666666666666644444455666666667777766666665 4556666667777776665444444556666777
Q ss_pred CEEeeeCCCCCC-cCccccCCCCCCCeeeccCccccc
Q 044234 87 RTLKLSGCSKIV-KFPESVISMEDLSELFLDRTSITE 122 (276)
Q Consensus 87 ~~L~l~~~~~~~-~lp~~l~~l~~L~~L~L~~n~i~~ 122 (276)
++|++++|...+ .+|..++++++|++|++++|.+++
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 777777665543 456666777777777777766653
No 35
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.56 E-value=4.4e-14 Score=128.82 Aligned_cols=114 Identities=20% Similarity=0.200 Sum_probs=67.8
Q ss_pred ccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccccCCCCCCC
Q 044234 8 NISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPITVSSLKCL 86 (276)
Q Consensus 8 ~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L 86 (276)
.|.++++|++|++++|......+..+.++++|++|++++|.++.++.. +..+++|++|++++|......+..+..+++|
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 162 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCccc
Confidence 455566666666666643333345566666666666666666666543 6666666666666664443333455566666
Q ss_pred CEEeeeCCCCCCcCcc-ccCCCCCCCeeeccCcccc
Q 044234 87 RTLKLSGCSKIVKFPE-SVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 87 ~~L~l~~~~~~~~lp~-~l~~l~~L~~L~L~~n~i~ 121 (276)
++|++++|+.++.++. .+..+++|++|++++|.++
T Consensus 163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 6666666555555543 4566666666666666654
No 36
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=5.6e-14 Score=121.37 Aligned_cols=143 Identities=23% Similarity=0.233 Sum_probs=115.9
Q ss_pred CcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCC
Q 044234 6 PRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKC 85 (276)
Q Consensus 6 P~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~ 85 (276)
|..+..+++|++|++++| .++.++.. +.+++|++|++++|.++.+|..+..+++|++|++++|......|..+..+++
T Consensus 48 ~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~ 125 (290)
T 1p9a_G 48 LATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125 (290)
T ss_dssp GGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT
T ss_pred HHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC
Confidence 456888999999999999 46666654 7899999999999999999999999999999999999766655677999999
Q ss_pred CCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCccccch
Q 044234 86 LRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILSDV 154 (276)
Q Consensus 86 L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~~~ 154 (276)
|++|++++|...+..+..+..+++|+.|++++|.++...... +..+ ++|+.|+++++ .++.++..
T Consensus 126 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~--~~~l-~~L~~L~L~~N-~l~~ip~~ 190 (290)
T 1p9a_G 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL--LNGL-ENLDTLLLQEN-SLYTIPKG 190 (290)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT--TTTC-TTCCEEECCSS-CCCCCCTT
T ss_pred CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHH--hcCc-CCCCEEECCCC-cCCccChh
Confidence 999999998766555566789999999999999987433221 1222 57899999987 57777764
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.55 E-value=3.1e-14 Score=134.43 Aligned_cols=123 Identities=24% Similarity=0.247 Sum_probs=104.0
Q ss_pred CCCccCc-ccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccc
Q 044234 1 NLKSLPR-NISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPI 78 (276)
Q Consensus 1 ~L~~LP~-~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~ 78 (276)
+|+.+|+ .|.++++|++|+|++|...+..+..+.++++|++|+|++|.++.+|.. |+++++|++|++++|...+..+.
T Consensus 63 ~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 142 (635)
T 4g8a_A 63 PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 142 (635)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTC
T ss_pred CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChh
Confidence 3567764 689999999999999954444456789999999999999999999865 89999999999999966555555
Q ss_pred cCCCCCCCCEEeeeCCCCCC-cCccccCCCCCCCeeeccCcccccc
Q 044234 79 TVSSLKCLRTLKLSGCSKIV-KFPESVISMEDLSELFLDRTSITEE 123 (276)
Q Consensus 79 ~~~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~L~~n~i~~~ 123 (276)
.++++++|++|++++|.... .+|..++.+++|++|++++|.+++.
T Consensus 143 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 143 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred hhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 78999999999999987644 4678889999999999999998743
No 38
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.55 E-value=8.6e-14 Score=131.49 Aligned_cols=138 Identities=15% Similarity=0.057 Sum_probs=99.0
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCCcccccC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLSTLPITV 80 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~~ 80 (276)
++++|..+. +++++|++++|...+..|..++++++|++|++++|.++.+ |..|+++++|++|++++|...+..|..+
T Consensus 24 l~~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 101 (606)
T 3t6q_A 24 LNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL 101 (606)
T ss_dssp CSSCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT
T ss_pred cccCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh
Confidence 566777664 4788888888855555567788888888888888888776 5568888888888888887766677778
Q ss_pred CCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCcccccc-CcccccCCCCCCCccEEeccCC
Q 044234 81 SSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEE-CKMLQNLPRLPASIHWILLNGC 145 (276)
Q Consensus 81 ~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~-~~~L~~L~~L~~~L~~L~~~~c 145 (276)
+++++|++|++++|...+..+..++.+++|++|++++|.+.+. ...+.. .++|+.|+++++
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----l~~L~~L~L~~n 163 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP----TEKLKVLDFQNN 163 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCC----CTTCCEEECCSS
T ss_pred cccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccC----CcccCEEEcccC
Confidence 8888888888888765554466678888888888888877631 122211 245667776665
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.55 E-value=1.8e-13 Score=119.86 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=75.5
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCCcccccC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLSTLPITV 80 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~~ 80 (276)
++.+|..+ .+++++|++++|...+..+..++++++|++|++++|.++.+ |..++.+++|++|++++|. +..+|..+
T Consensus 43 l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~ 119 (330)
T 1xku_A 43 LEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM 119 (330)
T ss_dssp CCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSC
T ss_pred ccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhh
Confidence 45566544 35777778877744433344677777788888877777776 5567777777777777774 44566554
Q ss_pred CCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCcccc
Q 044234 81 SSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 81 ~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
. ++|++|++++|...+..+..+..+++|+.|++++|.+.
T Consensus 120 ~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 120 P--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp C--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred c--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence 3 56777777776555444455666677777777666653
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.55 E-value=2e-14 Score=135.89 Aligned_cols=149 Identities=17% Similarity=0.063 Sum_probs=119.7
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccc-cccCCCCCCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCC-cccc
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFP-EITGRMEHLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLS-TLPI 78 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p-~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~-~lp~ 78 (276)
+..+|..+..+++|++|++++|...+..| ..+..+++|++|++++|.++.. |..++.+++|++|++++|...+ .+|.
T Consensus 388 l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 467 (606)
T 3vq2_A 388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467 (606)
T ss_dssp EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH
Confidence 34567778889999999999996555555 5788899999999999998875 5668999999999999997766 3788
Q ss_pred cCCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCccccch
Q 044234 79 TVSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILSDV 154 (276)
Q Consensus 79 ~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~~~ 154 (276)
.++.+++|++|++++|...+..|..++.+++|++|++++|.+++..+ ..+..+ ++|+.|++++|. ++.++..
T Consensus 468 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l-~~L~~L~l~~N~-l~~~p~~ 539 (606)
T 3vq2_A 468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS--SHYNQL-YSLSTLDCSFNR-IETSKGI 539 (606)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG--GGTTTC-TTCCEEECTTSC-CCCEESC
T ss_pred hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH--HHccCC-CcCCEEECCCCc-CcccCHh
Confidence 88999999999999988877778888999999999999998875422 122233 477999999985 7777764
No 41
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=7.9e-14 Score=124.04 Aligned_cols=149 Identities=21% Similarity=0.222 Sum_probs=115.1
Q ss_pred CCCccCcccCCCCCCCEEeecCCCCCCccccccC-CCCCCcEEEccCCCceecCc-cccCCCCCcEEecCCCCCCCcccc
Q 044234 1 NLKSLPRNISGLKSLSTLNLSGTSKFREFPEITG-RMEHLSNLHLEGTAIRELPV-SIELLSGLVLLNLKDCRNLSTLPI 78 (276)
Q Consensus 1 ~L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~-~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~ 78 (276)
+|+.+|..+. +.++.|+|++|...+..+..+. .+++|++|++++|.|+.++. .+..+++|++|+|++|......+.
T Consensus 29 ~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 106 (361)
T 2xot_A 29 QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF 106 (361)
T ss_dssp CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHH
Confidence 3677887663 5699999999954444455566 89999999999999999975 499999999999999976555556
Q ss_pred cCCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCccc-ccCCCCCCCccEEeccCCCCCccccc
Q 044234 79 TVSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKML-QNLPRLPASIHWILLNGCVSLEILSD 153 (276)
Q Consensus 79 ~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L-~~L~~L~~~L~~L~~~~c~~L~~~~~ 153 (276)
.+..+++|+.|++++|.+....|..+..+++|+.|++++|.++.....+ ..+..+ ++|+.|+++++ .++.++.
T Consensus 107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l-~~L~~L~L~~N-~l~~l~~ 180 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL-PKLMLLDLSSN-KLKKLPL 180 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----C-TTCCEEECCSS-CCCCCCH
T ss_pred HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccC-CcCCEEECCCC-CCCccCH
Confidence 7889999999999998877666788999999999999999987433221 111222 57889999886 5666664
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.54 E-value=1.3e-13 Score=126.12 Aligned_cols=115 Identities=22% Similarity=0.173 Sum_probs=68.5
Q ss_pred cccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccccCCCCCC
Q 044234 7 RNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPITVSSLKC 85 (276)
Q Consensus 7 ~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~ 85 (276)
..|.++++|++|++++|......+..+.++++|++|++++|.++.+|.. ++.+++|++|++++|......+..+..+++
T Consensus 93 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 172 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCc
Confidence 3455666666666666644433445566666666666666666666544 666666666666666444333335556666
Q ss_pred CCEEeeeCCCCCCcCcc-ccCCCCCCCeeeccCcccc
Q 044234 86 LRTLKLSGCSKIVKFPE-SVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 86 L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~L~~n~i~ 121 (276)
|+.|++++|+.++.++. .+..+++|++|++++|.++
T Consensus 173 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred ccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 66666666555555553 3556666666666666654
No 43
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=1.9e-14 Score=113.96 Aligned_cols=136 Identities=19% Similarity=0.181 Sum_probs=110.6
Q ss_pred CCCCCCEEeecCCCCC-CccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCEE
Q 044234 11 GLKSLSTLNLSGTSKF-REFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTL 89 (276)
Q Consensus 11 ~l~~L~~L~Ls~~~~l-~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L 89 (276)
..++|++|++++|... +.+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|...+.+|..+..+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3578999999999643 38898889999999999999999988 779999999999999998777688777779999999
Q ss_pred eeeCCCCCCcCc--cccCCCCCCCeeeccCccccccCc----ccccCCCCCCCccEEeccCCCCCccccc
Q 044234 90 KLSGCSKIVKFP--ESVISMEDLSELFLDRTSITEECK----MLQNLPRLPASIHWILLNGCVSLEILSD 153 (276)
Q Consensus 90 ~l~~~~~~~~lp--~~l~~l~~L~~L~L~~n~i~~~~~----~L~~L~~L~~~L~~L~~~~c~~L~~~~~ 153 (276)
++++|.. ..+| ..+..+++|+.|++++|.++.... .+.. + ++|++|++.+|. +++++.
T Consensus 101 ~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~---l-~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 101 NLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKL---L-PQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp ECBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTT---C-SSCCEETTEETT-SCBCCS
T ss_pred eccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHh---C-ccCcEecCCCCC-hhhccc
Confidence 9999754 5544 678999999999999999875433 2333 3 477999998884 444443
No 44
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=1.1e-14 Score=113.01 Aligned_cols=127 Identities=20% Similarity=0.194 Sum_probs=102.7
Q ss_pred CCCCCEEeecCCCCC-CccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEe
Q 044234 12 LKSLSTLNLSGTSKF-REFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLK 90 (276)
Q Consensus 12 l~~L~~L~Ls~~~~l-~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~ 90 (276)
.++|+.|++++|... +.+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|...+.+|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 578999999999654 48898889999999999999999988 7799999999999999977776888777899999999
Q ss_pred eeCCCCCCc-CccccCCCCCCCeeeccCccccccCc----ccccCCCCCCCccEEecc
Q 044234 91 LSGCSKIVK-FPESVISMEDLSELFLDRTSITEECK----MLQNLPRLPASIHWILLN 143 (276)
Q Consensus 91 l~~~~~~~~-lp~~l~~l~~L~~L~L~~n~i~~~~~----~L~~L~~L~~~L~~L~~~ 143 (276)
+++|...+. .+..++.+++|++|++++|.+++... .+..+ ++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l----~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL----PQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC----TTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC----CCcccccCC
Confidence 999765442 33778999999999999998874432 12333 355666654
No 45
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.53 E-value=1.6e-14 Score=137.81 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=112.8
Q ss_pred cCcccC--CCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCC-cee--cCccccCC------CCCcEEecCCCCCC
Q 044234 5 LPRNIS--GLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTA-IRE--LPVSIELL------SGLVLLNLKDCRNL 73 (276)
Q Consensus 5 LP~~l~--~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~-i~~--lp~~i~~l------~~L~~L~L~~~~~l 73 (276)
+|+.++ ++++|++|++++|...+.+|..++++++|++|++++|. ++. +|..++.+ ++|++|++++|...
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 899888 99999999999998899999999999999999999998 884 88888876 99999999999665
Q ss_pred Ccccc--cCCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCC
Q 044234 74 STLPI--TVSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGC 145 (276)
Q Consensus 74 ~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c 145 (276)
.+|. .++.+++|++|++++|...+.+| .++.+++|++|++++|.++.....+. .++..|+.|+++++
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~---~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFC---GFTEQVENLSFAHN 387 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSE---EECTTCCEEECCSS
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhh---hhcccCcEEEccCC
Confidence 8998 89999999999999988777888 78888999999999998873322222 22222556666555
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.52 E-value=4.7e-14 Score=122.23 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=113.0
Q ss_pred CcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCc--cccCCCCCcEEecCCCCCCCcccccCCCC
Q 044234 6 PRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPV--SIELLSGLVLLNLKDCRNLSTLPITVSSL 83 (276)
Q Consensus 6 P~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~--~i~~l~~L~~L~L~~~~~l~~lp~~~~~l 83 (276)
|..+..+++|++|++++| .+..+|..+..+++|++|++++|.++.++. .+..+++|++|++++|...+..+..+..+
T Consensus 71 ~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 149 (306)
T 2z66_A 71 SQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149 (306)
T ss_dssp EHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC
T ss_pred ccccccccccCEEECCCC-ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccC
Confidence 445566899999999998 566788888889999999999999998865 58899999999999998777777888899
Q ss_pred CCCCEEeeeCCCCCC-cCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCccccc
Q 044234 84 KCLRTLKLSGCSKIV-KFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILSD 153 (276)
Q Consensus 84 ~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~~ 153 (276)
++|++|++++|...+ .+|..+..+++|++|++++|.+++... ..+..+ ++|+.|+++++. +..++.
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l-~~L~~L~L~~N~-l~~~~~ 216 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNSL-SSLQVLNMSHNN-FFSLDT 216 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT--TTTTTC-TTCCEEECTTSC-CSBCCS
T ss_pred cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH--HHhcCC-CCCCEEECCCCc-cCccCh
Confidence 999999999976655 477888999999999999998875422 122223 467889998874 444443
No 47
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.52 E-value=4.8e-14 Score=130.90 Aligned_cols=138 Identities=20% Similarity=0.168 Sum_probs=113.5
Q ss_pred CCCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCCccccc
Q 044234 1 NLKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLSTLPIT 79 (276)
Q Consensus 1 ~L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~ 79 (276)
+|+.+|..+. ++|++|++++|...+..|..+..+++|++|++++|.++.+ |..++++++|++|++++|. +..+|..
T Consensus 11 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~ 87 (520)
T 2z7x_B 11 GLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH 87 (520)
T ss_dssp CCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC
T ss_pred Cccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc
Confidence 4678888775 8999999999965555567899999999999999999988 6679999999999999995 4578876
Q ss_pred CCCCCCCCEEeeeCCCCCC-cCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCC
Q 044234 80 VSSLKCLRTLKLSGCSKIV-KFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVS 147 (276)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~ 147 (276)
.+++|++|++++|...+ .+|..++.+++|++|++++|.+++ ..+..++.+ .++.|++++|.-
T Consensus 88 --~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L--~L~~L~l~~n~l 150 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHL--NISKVLLVLGET 150 (520)
T ss_dssp --CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTS--CEEEEEEEECTT
T ss_pred --ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccc--eeeEEEeecccc
Confidence 89999999999987766 578899999999999999999874 233444333 458888877643
No 48
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.52 E-value=1.9e-13 Score=125.67 Aligned_cols=140 Identities=17% Similarity=0.199 Sum_probs=111.3
Q ss_pred CCCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCCccccc
Q 044234 1 NLKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLSTLPIT 79 (276)
Q Consensus 1 ~L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~ 79 (276)
+++.+|..+ .+++++|++++|...+..+..+.++++|++|++++|.++.+ |..++++++|++|++++|......+..
T Consensus 22 ~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 99 (477)
T 2id5_A 22 RFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV 99 (477)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS
T ss_pred CcCcCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccc
Confidence 367788866 46899999999965555578899999999999999999988 667999999999999999655444456
Q ss_pred CCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCC
Q 044234 80 VSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGC 145 (276)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c 145 (276)
+.++++|++|++++|...+..+..+..+++|+.|++++|.+..... ..+..+ .+|+.|++++|
T Consensus 100 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l-~~L~~L~l~~n 162 (477)
T 2id5_A 100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH--RAFSGL-NSLEQLTLEKC 162 (477)
T ss_dssp STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT--TSSTTC-TTCCEEEEESC
T ss_pred ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh--hhccCC-CCCCEEECCCC
Confidence 7899999999999998877778889999999999999998864322 112222 35566666655
No 49
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.52 E-value=7.1e-15 Score=140.25 Aligned_cols=144 Identities=14% Similarity=0.135 Sum_probs=120.7
Q ss_pred CccCcccCCCCCCCEEeecCCCCCCc-----------------cccccC--CCCCCcEEEccCCCce-ecCccccCCCCC
Q 044234 3 KSLPRNISGLKSLSTLNLSGTSKFRE-----------------FPEITG--RMEHLSNLHLEGTAIR-ELPVSIELLSGL 62 (276)
Q Consensus 3 ~~LP~~l~~l~~L~~L~Ls~~~~l~~-----------------~p~~~~--~l~~L~~L~L~~n~i~-~lp~~i~~l~~L 62 (276)
+.+|+.++++++|++|++++|...+. +|..++ ++++|++|++++|.+. .+|..++++++|
T Consensus 196 ~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp EEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred ccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 34899999999999999999975553 999999 9999999999999866 679899999999
Q ss_pred cEEecCCCC-CCC-cccccCCCC------CCCCEEeeeCCCCCCcCcc--ccCCCCCCCeeeccCccccccCcccccCCC
Q 044234 63 VLLNLKDCR-NLS-TLPITVSSL------KCLRTLKLSGCSKIVKFPE--SVISMEDLSELFLDRTSITEECKMLQNLPR 132 (276)
Q Consensus 63 ~~L~L~~~~-~l~-~lp~~~~~l------~~L~~L~l~~~~~~~~lp~--~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~ 132 (276)
++|++++|. ..+ .+|..++.+ ++|++|++++|... .+|. .++.+++|++|++++|.+++..+.+..+
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l-- 352 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE-- 352 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEE--
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCC--
Confidence 999999997 666 789888776 99999999998766 8998 8999999999999999998555533332
Q ss_pred CCCCccEEeccCCCCCcccc
Q 044234 133 LPASIHWILLNGCVSLEILS 152 (276)
Q Consensus 133 L~~~L~~L~~~~c~~L~~~~ 152 (276)
++|+.|+++++. +..++
T Consensus 353 --~~L~~L~L~~N~-l~~lp 369 (636)
T 4eco_A 353 --IKLASLNLAYNQ-ITEIP 369 (636)
T ss_dssp --EEESEEECCSSE-EEECC
T ss_pred --CCCCEEECCCCc-ccccc
Confidence 477889888873 33444
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.52 E-value=5e-14 Score=124.66 Aligned_cols=113 Identities=22% Similarity=0.240 Sum_probs=61.3
Q ss_pred ccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccc--cCCCCC
Q 044234 8 NISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPI--TVSSLK 84 (276)
Q Consensus 8 ~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~--~~~~l~ 84 (276)
.+.++++|++|++++|...+..|..++++++|++|++++|.++.+|.. ++++++|++|++++|.. ..+|. .+..++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~ 149 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLT 149 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCT
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCC-cccCchhhhccCC
Confidence 355555566666665533333344455556666666666666555544 55566666666665532 23443 455566
Q ss_pred CCCEEeeeCCCCCCcC-ccccCCCCCCCeeeccCcccc
Q 044234 85 CLRTLKLSGCSKIVKF-PESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 85 ~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~L~~n~i~ 121 (276)
+|++|++++|+..+.+ +..+..+++|++|++++|.+.
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 6666666665433333 344555666666666665554
No 51
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=5.6e-14 Score=114.30 Aligned_cols=135 Identities=12% Similarity=0.234 Sum_probs=107.8
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCcee-cCccccCCCCCcEEecCCCCCCCcccccC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRE-LPVSIELLSGLVLLNLKDCRNLSTLPITV 80 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~-lp~~i~~l~~L~~L~L~~~~~l~~lp~~~ 80 (276)
++.+| .+..+++|++|++++| ....++ .+..+++|++|++++|.++. .+..++.+++|++|++++|......|..+
T Consensus 56 i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l 132 (197)
T 4ezg_A 56 VTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132 (197)
T ss_dssp CSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHH
T ss_pred ccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHH
Confidence 45667 5788999999999998 455444 67789999999999999986 57779999999999999998777778888
Q ss_pred CCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCC
Q 044234 81 SSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGC 145 (276)
Q Consensus 81 ~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c 145 (276)
..+++|++|++++|..++.+| .+..+++|+.|++++|.++. ...+. .+ ++|+.|++++.
T Consensus 133 ~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~~l~---~l-~~L~~L~l~~N 191 (197)
T 4ezg_A 133 NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YRGIE---DF-PKLNQLYAFSQ 191 (197)
T ss_dssp TTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CTTGG---GC-SSCCEEEECBC
T ss_pred hhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hHHhc---cC-CCCCEEEeeCc
Confidence 899999999999987577777 58889999999999998863 22333 33 46788887765
No 52
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.52 E-value=6.6e-14 Score=127.67 Aligned_cols=138 Identities=22% Similarity=0.143 Sum_probs=112.4
Q ss_pred CCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEe
Q 044234 12 LKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLK 90 (276)
Q Consensus 12 l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~ 90 (276)
.++|++|++++|...+..|..++.+++|++|++++|.++.+ |..++.+++|++|++++|...+..|..+..+++|++|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 36899999999977777888899999999999999999988 44699999999999999977666678889999999999
Q ss_pred eeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCcccc
Q 044234 91 LSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILS 152 (276)
Q Consensus 91 l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~ 152 (276)
+++|...+..|..+..+++|++|++++|.+++.... .+..+ ++|+.|++++++--...+
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l-~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG--IFDRL-TSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT--TTTTC-TTCCEEECCSSCBCCCTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHh--HhccC-CcccEEEccCCCcccCCC
Confidence 999887777788899999999999999998743322 12222 578999998875443333
No 53
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.51 E-value=1.6e-13 Score=122.91 Aligned_cols=119 Identities=21% Similarity=0.203 Sum_probs=94.2
Q ss_pred CCccCcc-cCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCccccc
Q 044234 2 LKSLPRN-ISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPIT 79 (276)
Q Consensus 2 L~~LP~~-l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~ 79 (276)
++.+|.. +..+++|++|++++|......+..+..+++|++|++++|.++.+++. ++.+++|++|++++|.. ..+|..
T Consensus 57 l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~ 135 (390)
T 3o6n_A 57 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRG 135 (390)
T ss_dssp ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT
T ss_pred hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCcc-CcCCHH
Confidence 3456654 56788999999999854444456788899999999999999888554 88899999999998854 456655
Q ss_pred -CCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCcccc
Q 044234 80 -VSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 80 -~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
+..+++|++|++++|...+..|..+..+++|++|++++|.++
T Consensus 136 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 578899999999998776666677888899999999998876
No 54
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=2.3e-14 Score=140.77 Aligned_cols=116 Identities=17% Similarity=0.135 Sum_probs=80.1
Q ss_pred cCcccCCCCCCCEEeecCCCCCC-----------------ccccccC--CCCCCcEEEccCCCce-ecCccccCCCCCcE
Q 044234 5 LPRNISGLKSLSTLNLSGTSKFR-----------------EFPEITG--RMEHLSNLHLEGTAIR-ELPVSIELLSGLVL 64 (276)
Q Consensus 5 LP~~l~~l~~L~~L~Ls~~~~l~-----------------~~p~~~~--~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~ 64 (276)
+|+.++++++|++|+|++|...+ .+|..++ ++++|++|++++|.+. .+|..++++++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 67777777888888888775444 2777766 7777888888777644 56777777777777
Q ss_pred EecCCCC-CCC-cccccCCC-------CCCCCEEeeeCCCCCCcCcc--ccCCCCCCCeeeccCcccc
Q 044234 65 LNLKDCR-NLS-TLPITVSS-------LKCLRTLKLSGCSKIVKFPE--SVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 65 L~L~~~~-~l~-~lp~~~~~-------l~~L~~L~l~~~~~~~~lp~--~l~~l~~L~~L~L~~n~i~ 121 (276)
|++++|. ..+ .+|..++. +++|++|++++|... .+|. .++.+++|+.|++++|.++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc
Confidence 7777776 444 46654433 337777777776544 6666 6777777777777777665
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.50 E-value=5.3e-13 Score=121.60 Aligned_cols=117 Identities=23% Similarity=0.172 Sum_probs=98.3
Q ss_pred CCCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCc-cccCCCCCcEEecCCCCCCCccccc
Q 044234 1 NLKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPV-SIELLSGLVLLNLKDCRNLSTLPIT 79 (276)
Q Consensus 1 ~L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~ 79 (276)
+|+.+|..+. ++++.|++++|......+..+.++++|++|++++|.++.++. .+.++++|++|++++|......+..
T Consensus 54 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 131 (440)
T 3zyj_A 54 NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA 131 (440)
T ss_dssp CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTT
T ss_pred CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhH
Confidence 3677888664 789999999996555566889999999999999999999864 5999999999999999655544557
Q ss_pred CCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCcc
Q 044234 80 VSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTS 119 (276)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~ 119 (276)
+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~ 171 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK 171 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT
T ss_pred hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC
Confidence 8999999999999987665555678999999999998854
No 56
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.50 E-value=1.6e-13 Score=125.16 Aligned_cols=137 Identities=20% Similarity=0.183 Sum_probs=83.6
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCce-ec-CccccCCCCCcEEecCCCCCCCccccc
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIR-EL-PVSIELLSGLVLLNLKDCRNLSTLPIT 79 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~-~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~ 79 (276)
++.+|. + .++|++|++++|...+..|..++++++|++|++++|.+. .+ +..++++++|++|++++|...+..|..
T Consensus 22 l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 98 (455)
T 3v47_A 22 LHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA 98 (455)
T ss_dssp CSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT
T ss_pred cccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh
Confidence 455555 2 256777777777544444666677777777777777664 44 334677777777777777655555666
Q ss_pred CCCCCCCCEEeeeCCCCCCcCccc--cCCCCCCCeeeccCccccccCcc--cccCCCCCCCccEEeccCC
Q 044234 80 VSSLKCLRTLKLSGCSKIVKFPES--VISMEDLSELFLDRTSITEECKM--LQNLPRLPASIHWILLNGC 145 (276)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~~lp~~--l~~l~~L~~L~L~~n~i~~~~~~--L~~L~~L~~~L~~L~~~~c 145 (276)
++++++|++|++++|...+..|.. ++.+++|++|++++|.+++.... +..+ ++|++|+++++
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l----~~L~~L~L~~n 164 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM----RRFHVLDLTFN 164 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC----TTCCEEECTTC
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC----CcccEEeCCCC
Confidence 777777777777776555444443 66677777777777766533211 2222 34555665554
No 57
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.49 E-value=6e-13 Score=115.80 Aligned_cols=137 Identities=15% Similarity=0.278 Sum_probs=91.7
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVS 81 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 81 (276)
++.+| .+..+++|++|++++| .+..++. +..+++|++|++++|.++.++ .+..+++|+.|++++|.. ..++. +.
T Consensus 53 i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l-~~~~~-l~ 126 (308)
T 1h6u_A 53 VTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQI-TDVTP-LA 126 (308)
T ss_dssp CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCC-CCCGG-GT
T ss_pred ccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCC-CCchh-hc
Confidence 44555 3677888888888887 4555555 777888888888888887765 577788888888888754 34443 77
Q ss_pred CCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCcccc
Q 044234 82 SLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILS 152 (276)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~ 152 (276)
.+++|++|++++|.. ..++. +..+++|+.|++++|.+++. ..+. .+ ++|+.|+++++ .++.++
T Consensus 127 ~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~-~~l~---~l-~~L~~L~l~~n-~l~~~~ 189 (308)
T 1h6u_A 127 GLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVSDL-TPLA---NL-SKLTTLKADDN-KISDIS 189 (308)
T ss_dssp TCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSSCCCCC-GGGT---TC-TTCCEEECCSS-CCCCCG
T ss_pred CCCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCCcCCCC-hhhc---CC-CCCCEEECCCC-ccCcCh
Confidence 788888888888654 34443 67777888888888777532 1122 22 45677777665 344443
No 58
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.49 E-value=2e-13 Score=128.18 Aligned_cols=137 Identities=23% Similarity=0.201 Sum_probs=111.4
Q ss_pred CCCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCCccccc
Q 044234 1 NLKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLSTLPIT 79 (276)
Q Consensus 1 ~L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~ 79 (276)
+|+.+|..+. ++|++|++++|...+..|..+.++++|++|++++|.++.+ |..++++++|++|++++|. +..+|..
T Consensus 42 ~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~ 118 (562)
T 3a79_B 42 NLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC 118 (562)
T ss_dssp CCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC
T ss_pred CCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc
Confidence 3677887664 8999999999965555567899999999999999999988 5569999999999999995 5578876
Q ss_pred CCCCCCCCEEeeeCCCCCC-cCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCC
Q 044234 80 VSSLKCLRTLKLSGCSKIV-KFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~ 146 (276)
.+++|++|++++|...+ .+|..++++++|++|++++|.+.. ..+..++.+ .++.|+++++.
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L--~L~~L~L~~n~ 180 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHL--HLSCILLDLVS 180 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTS--CEEEEEEEESS
T ss_pred --ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--Cchhhhhhc--eeeEEEeeccc
Confidence 89999999999987655 346789999999999999999874 234444444 55888888764
No 59
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.49 E-value=8.6e-14 Score=136.69 Aligned_cols=141 Identities=15% Similarity=0.178 Sum_probs=109.6
Q ss_pred cCcccC--CCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCC-cee--cCccccCCC-------CCcEEecCCCCC
Q 044234 5 LPRNIS--GLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTA-IRE--LPVSIELLS-------GLVLLNLKDCRN 72 (276)
Q Consensus 5 LP~~l~--~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~-i~~--lp~~i~~l~-------~L~~L~L~~~~~ 72 (276)
+|+.++ ++++|++|++++|...+.+|..++++++|++|++++|. ++. +|..++.++ +|+.|++++|..
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 888877 89999999999998888999999999999999999997 874 787666655 999999999865
Q ss_pred CCcccc--cCCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCcc
Q 044234 73 LSTLPI--TVSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEI 150 (276)
Q Consensus 73 l~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~ 150 (276)
. .+|. .++++++|+.|++++|... .+| .++.+++|+.|++++|.+...... +..++.+|+.|++++|. +..
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~---l~~l~~~L~~L~Ls~N~-L~~ 633 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPED---FCAFTDQVEGLGFSHNK-LKY 633 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTT---SCEECTTCCEEECCSSC-CCS
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHH---HhhccccCCEEECcCCC-CCc
Confidence 5 8888 8889999999999987655 888 788888999999988887622222 22332236666666653 444
Q ss_pred cc
Q 044234 151 LS 152 (276)
Q Consensus 151 ~~ 152 (276)
++
T Consensus 634 lp 635 (876)
T 4ecn_A 634 IP 635 (876)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 60
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=8.1e-14 Score=131.19 Aligned_cols=124 Identities=21% Similarity=0.241 Sum_probs=101.6
Q ss_pred CCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeC
Q 044234 14 SLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSG 93 (276)
Q Consensus 14 ~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~ 93 (276)
.|+.|++++| .++.+|. ++.+++|++|++++|.++.+|..++.+++|+.|+|++|... .+| .++.+++|+.|++++
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEECCC
Confidence 5899999999 5667887 88999999999999999999999999999999999999654 478 799999999999999
Q ss_pred CCCCCcC-ccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEe
Q 044234 94 CSKIVKF-PESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWIL 141 (276)
Q Consensus 94 ~~~~~~l-p~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~ 141 (276)
|...+.. |..++.+++|+.|++++|.+++.......+...-++|+.|+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 8766655 88999999999999999999765443332222224555554
No 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.49 E-value=2.3e-13 Score=127.31 Aligned_cols=114 Identities=25% Similarity=0.239 Sum_probs=65.1
Q ss_pred ccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecC-ccccCCCCCcEEecCCCCCCCcccccCCCCCCC
Q 044234 8 NISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELP-VSIELLSGLVLLNLKDCRNLSTLPITVSSLKCL 86 (276)
Q Consensus 8 ~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L 86 (276)
.|.++++|++|++++|...+..+..++++++|++|++++|.++.++ ..++++++|++|++++|......+..++++++|
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 3555666666666666433333445556666666666666666554 346666666666666654333222245666666
Q ss_pred CEEeeeCCCCCC-cCccccCCCCCCCeeeccCcccc
Q 044234 87 RTLKLSGCSKIV-KFPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 87 ~~L~l~~~~~~~-~lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
++|++++|...+ .+|..++++++|++|++++|.++
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 666666654443 35666666666666666666654
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.49 E-value=6.8e-13 Score=121.32 Aligned_cols=116 Identities=22% Similarity=0.144 Sum_probs=97.5
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecC-ccccCCCCCcEEecCCCCCCCcccccC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELP-VSIELLSGLVLLNLKDCRNLSTLPITV 80 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~~ 80 (276)
++.+|..+. +++++|++++|......+..+.++++|++|++++|.++.++ ..+.++++|++|+|++|......+..+
T Consensus 66 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 143 (452)
T 3zyi_A 66 LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF 143 (452)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTS
T ss_pred cCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhh
Confidence 567887663 78999999999766666888999999999999999999886 559999999999999997655555568
Q ss_pred CCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCcc
Q 044234 81 SSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTS 119 (276)
Q Consensus 81 ~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~ 119 (276)
..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus 144 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~ 182 (452)
T 3zyi_A 144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK 182 (452)
T ss_dssp SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT
T ss_pred cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC
Confidence 899999999999987655445578999999999998843
No 63
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.49 E-value=9.6e-14 Score=129.55 Aligned_cols=116 Identities=19% Similarity=0.206 Sum_probs=74.6
Q ss_pred cccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCC-cccccCCCCC
Q 044234 7 RNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLS-TLPITVSSLK 84 (276)
Q Consensus 7 ~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~-~lp~~~~~l~ 84 (276)
..|.++++|++|++++|...+..|..++.+++|++|++++|.++.+++. ++.+++|++|++++|...+ ..|..+++++
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 3456666666666666644444445666667777777777766666554 6667777777777765443 3455666777
Q ss_pred CCCEEeeeCCCCCCcCc-cccCCCCCCCeeeccCccccc
Q 044234 85 CLRTLKLSGCSKIVKFP-ESVISMEDLSELFLDRTSITE 122 (276)
Q Consensus 85 ~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~L~~n~i~~ 122 (276)
+|++|++++|...+.+| ..+..+++|++|++++|.+++
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 77777777766555554 456677777777777776653
No 64
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.48 E-value=2.6e-13 Score=128.39 Aligned_cols=119 Identities=20% Similarity=0.184 Sum_probs=96.3
Q ss_pred CccCcc-cCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCccccc-
Q 044234 3 KSLPRN-ISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPIT- 79 (276)
Q Consensus 3 ~~LP~~-l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~- 79 (276)
..+|.. +.++++|++|++++|...+..|..++.+++|++|++++|.++.+++. ++++++|++|++++|... .+|..
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~ 142 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGI 142 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHH
Confidence 455654 56688999999999865555556888999999999999999988665 789999999999998554 55544
Q ss_pred CCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccc
Q 044234 80 VSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITE 122 (276)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~ 122 (276)
++.+++|++|++++|...+..|..++.+++|++|++++|.++.
T Consensus 143 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 5889999999999987777777778899999999999998863
No 65
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=5.1e-13 Score=108.31 Aligned_cols=126 Identities=18% Similarity=0.185 Sum_probs=104.4
Q ss_pred CCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc--ccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeee
Q 044234 15 LSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS--IELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLS 92 (276)
Q Consensus 15 L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~--i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~ 92 (276)
-++++++++ .++.+|..+.. ++++|++++|.++.++.. ++.+++|++|++++|...+..|..+.++++|++|+++
T Consensus 10 ~~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 378999998 57888886653 899999999999999764 8999999999999998887778999999999999999
Q ss_pred CCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCC
Q 044234 93 GCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 93 ~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~ 146 (276)
+|...+..+..+..+++|++|++++|.+++.... .+..+ ++|++|++++.+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l-~~L~~L~L~~N~ 137 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG--SFEHL-NSLTSLNLASNP 137 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT--SSTTC-TTCCEEECTTCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH--HhhcC-CCCCEEEeCCCC
Confidence 9887777777789999999999999999754322 12222 467888887753
No 66
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.48 E-value=2.1e-13 Score=127.31 Aligned_cols=142 Identities=18% Similarity=0.160 Sum_probs=111.9
Q ss_pred CCCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecC-ccccCCCCCcEEecCCCCCCCccccc
Q 044234 1 NLKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELP-VSIELLSGLVLLNLKDCRNLSTLPIT 79 (276)
Q Consensus 1 ~L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~ 79 (276)
+++++|+.+. ++|++|++++|...+..|..+.++++|++|++++|.++.++ ..++.+++|++|++++|...+..|..
T Consensus 16 ~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 16 SFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred ccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH
Confidence 3678888664 79999999999755556788999999999999999999886 56999999999999999777666666
Q ss_pred CCCCCCCCEEeeeCCCCCC-cCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCC
Q 044234 80 VSSLKCLRTLKLSGCSKIV-KFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~ 146 (276)
++++++|++|++++|...+ ..|..++.+++|++|++++|.+.+.... ..+..+ ++|++|+++++.
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~l-~~L~~L~L~~n~ 159 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR-IDFAGL-TSLNELEIKALS 159 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTC-CEEEEEEEEETT
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH-hhhhcc-cccCeeeccCCc
Confidence 9999999999999987654 4567899999999999999874322210 112222 456777776653
No 67
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.48 E-value=1.6e-13 Score=131.39 Aligned_cols=113 Identities=20% Similarity=0.221 Sum_probs=64.3
Q ss_pred cCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccccCCCCCCCC
Q 044234 9 ISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPITVSSLKCLR 87 (276)
Q Consensus 9 l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~ 87 (276)
|.++++|++|++++|...+..|..++++++|++|++++|.++.+|.. |+++++|++|++++|...+..|..++++++|+
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 45555566666655544444455555566666666666666655542 56666666666666544433334555666666
Q ss_pred EEeeeCCCCCCcCccccCCCCCCCeeeccCcccc
Q 044234 88 TLKLSGCSKIVKFPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 88 ~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
+|++++|...+..|..++.+++|++|++++|.++
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred EEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence 6666665555555555556666666666665554
No 68
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=3e-13 Score=107.59 Aligned_cols=114 Identities=19% Similarity=0.177 Sum_probs=94.6
Q ss_pred CCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeee
Q 044234 14 SLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLS 92 (276)
Q Consensus 14 ~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~ 92 (276)
+.++++++++ .++.+|..+. ++|++|++++|.|+.+ |..++.+++|++|+|++|...+..+..+..+++|++|+++
T Consensus 10 ~~~~l~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCC-CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4688999998 6777887663 8999999999999999 5559999999999999997665445557899999999999
Q ss_pred CCCCCCcCccccCCCCCCCeeeccCccccccCcccccC
Q 044234 93 GCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNL 130 (276)
Q Consensus 93 ~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L 130 (276)
+|...+..+..+..+++|+.|++++|++...|..+..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l 124 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYL 124 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHH
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHH
Confidence 98665544456899999999999999999888755444
No 69
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.47 E-value=7.2e-13 Score=125.14 Aligned_cols=118 Identities=20% Similarity=0.220 Sum_probs=81.1
Q ss_pred CccCc-ccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCCccccc-
Q 044234 3 KSLPR-NISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLSTLPIT- 79 (276)
Q Consensus 3 ~~LP~-~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~- 79 (276)
+.++. .+.++++|++|++++| .++.+|..+..+++|++|++++|.++.+ |..++.+++|++|++++|...+.+|..
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred CccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 34444 3777888888888887 4567777777888888888888887776 445777777777777777666555543
Q ss_pred CCCCCCCCEEeeeCCCCCCcC--ccccCCCCCCCeeeccCcccc
Q 044234 80 VSSLKCLRTLKLSGCSKIVKF--PESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~~l--p~~l~~l~~L~~L~L~~n~i~ 121 (276)
+..+++|++|++++|...+.. +..+..+++|++|++++|.+.
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC
Confidence 666777777777776554433 445666666666666666654
No 70
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=7.4e-14 Score=135.11 Aligned_cols=138 Identities=20% Similarity=0.228 Sum_probs=105.1
Q ss_pred cCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCC
Q 044234 5 LPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLK 84 (276)
Q Consensus 5 LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~ 84 (276)
.|+.+..++.|+.|+|++|. +..+|..+..+++|++|+|++|.|+.+|..++.+++|++|+|++|... .+|..++.++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp ------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred ChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 46678889999999999994 668888888999999999999999999999999999999999999655 8899999999
Q ss_pred CCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCccc----------------ccCCCCCCCccEEeccCC
Q 044234 85 CLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKML----------------QNLPRLPASIHWILLNGC 145 (276)
Q Consensus 85 ~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L----------------~~L~~L~~~L~~L~~~~c 145 (276)
+|++|+|++|. ++.+|..++.+++|+.|+|++|.+++..+.. .--..+|..++.|++.++
T Consensus 294 ~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 294 QLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEINTD 369 (727)
T ss_dssp TCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------
T ss_pred CCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeEeecc
Confidence 99999999975 5689999999999999999999987322110 001345677888887765
No 71
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=9.3e-13 Score=106.95 Aligned_cols=125 Identities=18% Similarity=0.191 Sum_probs=102.2
Q ss_pred CCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeCC
Q 044234 15 LSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSGC 94 (276)
Q Consensus 15 L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~ 94 (276)
-++++++++ .++.+|..+. ++|++|++++|.|+.+|..+..+++|+.|++++|......+..|.++++|++|++++|
T Consensus 12 ~~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 12 DTVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 367899887 6778887654 6899999999999999988999999999999999777766678999999999999998
Q ss_pred CCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCC
Q 044234 95 SKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGC 145 (276)
Q Consensus 95 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c 145 (276)
...+..|..+..+++|+.|++++|.++..... .+..+ ++|+.|++++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~--~~~~l-~~L~~L~L~~N 136 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG--AFNDL-SALSHLAIGAN 136 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTT--TTTTC-TTCCEEECCSS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChh--hhhcC-ccccEEEeCCC
Confidence 77766667899999999999999998743321 12222 46678877765
No 72
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=8.7e-14 Score=110.10 Aligned_cols=114 Identities=19% Similarity=0.232 Sum_probs=96.8
Q ss_pred ccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCcee-cCccccCCCCCcEEecCCCCCCCccc--ccC
Q 044234 4 SLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRE-LPVSIELLSGLVLLNLKDCRNLSTLP--ITV 80 (276)
Q Consensus 4 ~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~-lp~~i~~l~~L~~L~L~~~~~l~~lp--~~~ 80 (276)
.+|..+..+++|++|++++|. ++.+ ..+..+++|++|++++|.++. +|..+..+++|++|++++|.. ..+| ..+
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~l 116 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL-KDISTLEPL 116 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSC-CSSGGGGGG
T ss_pred hHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCcc-CcchhHHHH
Confidence 678878889999999999995 5555 778899999999999999998 676678899999999999954 5544 678
Q ss_pred CCCCCCCEEeeeCCCCCCcCcc----ccCCCCCCCeeeccCcccc
Q 044234 81 SSLKCLRTLKLSGCSKIVKFPE----SVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 81 ~~l~~L~~L~l~~~~~~~~lp~----~l~~l~~L~~L~L~~n~i~ 121 (276)
..+++|++|++++|... .+|. .+..+++|++|++++|.+.
T Consensus 117 ~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 117 KKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp SSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred hcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh
Confidence 99999999999997654 4454 7899999999999888764
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.46 E-value=3.4e-14 Score=123.77 Aligned_cols=136 Identities=18% Similarity=0.195 Sum_probs=99.2
Q ss_pred CCCCCCEEeecCCCCCCcccccc--CCCCCCcEEEccCCCceecCccccCC-----CCCcEEecCCCCCCCcccccCCCC
Q 044234 11 GLKSLSTLNLSGTSKFREFPEIT--GRMEHLSNLHLEGTAIRELPVSIELL-----SGLVLLNLKDCRNLSTLPITVSSL 83 (276)
Q Consensus 11 ~l~~L~~L~Ls~~~~l~~~p~~~--~~l~~L~~L~L~~n~i~~lp~~i~~l-----~~L~~L~L~~~~~l~~lp~~~~~l 83 (276)
++++|++|++++|...+..|..+ +.+++|++|++++|.++.+|..++.+ ++|++|++++|...+..|..++.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 58889999999986666777765 78889999999999888887767766 889999999887766666888889
Q ss_pred CCCCEEeeeCCCCCCc--Ccccc--CCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCC
Q 044234 84 KCLRTLKLSGCSKIVK--FPESV--ISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 84 ~~L~~L~l~~~~~~~~--lp~~l--~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~ 146 (276)
++|++|++++|...+. +|..+ +.+++|++|++++|.++..-.....+-.-.++|+.|+++++.
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence 9999999998876654 34444 788889999998888762110000000011467888888764
No 74
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.46 E-value=9.5e-13 Score=115.42 Aligned_cols=115 Identities=16% Similarity=0.192 Sum_probs=87.8
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCCcccccC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLSTLPITV 80 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~~ 80 (276)
++.+|..+ .++|++|++++|...+..|..+.++++|++|++++|.++.+ |..++.+++|++|++++|. +..+|..+
T Consensus 45 l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~ 121 (332)
T 2ft3_A 45 LKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNL 121 (332)
T ss_dssp CSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSC
T ss_pred ccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCccc
Confidence 45667655 36888888888854444456788888899999998888877 5568888899999998884 45677665
Q ss_pred CCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCcccc
Q 044234 81 SSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 81 ~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
. ++|++|++++|...+..+..+..+++|+.|++++|.++
T Consensus 122 ~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 122 P--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp C--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred c--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 5 78888888887655444456788888999999888875
No 75
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=5.5e-13 Score=113.54 Aligned_cols=134 Identities=22% Similarity=0.254 Sum_probs=98.5
Q ss_pred CccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCC
Q 044234 3 KSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSS 82 (276)
Q Consensus 3 ~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~ 82 (276)
+.++ .+..+++|++|++++| .++.++ .+..+++|++|++++|.++.++. +..+++|+.|++++|. +..+|... .
T Consensus 32 ~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~-~ 105 (263)
T 1xeu_A 32 TDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGIP-S 105 (263)
T ss_dssp TSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCC-C
T ss_pred cccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCccc-c
Confidence 3444 3566888999999988 566676 56778899999999999988877 8889999999999885 44455433 3
Q ss_pred CCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCccc
Q 044234 83 LKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEIL 151 (276)
Q Consensus 83 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~ 151 (276)
++|+.|++++|.. ..++ .+..+++|+.|++++|.+++. ..+..+ ++|+.|+++++. +..+
T Consensus 106 -~~L~~L~L~~N~l-~~~~-~l~~l~~L~~L~Ls~N~i~~~-~~l~~l----~~L~~L~L~~N~-i~~~ 165 (263)
T 1xeu_A 106 -ACLSRLFLDNNEL-RDTD-SLIHLKNLEILSIRNNKLKSI-VMLGFL----SKLEVLDLHGNE-ITNT 165 (263)
T ss_dssp -SSCCEEECCSSCC-SBSG-GGTTCTTCCEEECTTSCCCBC-GGGGGC----TTCCEEECTTSC-CCBC
T ss_pred -CcccEEEccCCcc-CCCh-hhcCcccccEEECCCCcCCCC-hHHccC----CCCCEEECCCCc-Ccch
Confidence 8899999988754 4454 488888999999999888642 233332 467888888873 4444
No 76
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.46 E-value=7.4e-13 Score=116.12 Aligned_cols=141 Identities=19% Similarity=0.257 Sum_probs=110.9
Q ss_pred CCccC-cccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccC
Q 044234 2 LKSLP-RNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITV 80 (276)
Q Consensus 2 L~~LP-~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~ 80 (276)
++.++ ..+.++++|++|++++|......|..++.+++|++|++++|.++.+|..+. ++|++|++++|......+..+
T Consensus 66 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~ 143 (332)
T 2ft3_A 66 ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVF 143 (332)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGG
T ss_pred CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHh
Confidence 45554 468999999999999996555568889999999999999999999998765 899999999997665555568
Q ss_pred CCCCCCCEEeeeCCCCC--CcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCcccc
Q 044234 81 SSLKCLRTLKLSGCSKI--VKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILS 152 (276)
Q Consensus 81 ~~l~~L~~L~l~~~~~~--~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~ 152 (276)
..+++|++|++++|... +..+..+..+ +|+.|++++|.++.... .++.+|+.|+++++ .++.++
T Consensus 144 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~------~~~~~L~~L~l~~n-~i~~~~ 209 (332)
T 2ft3_A 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK------DLPETLNELHLDHN-KIQAIE 209 (332)
T ss_dssp SSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS------SSCSSCSCCBCCSS-CCCCCC
T ss_pred CCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc------cccCCCCEEECCCC-cCCccC
Confidence 89999999999998763 3566677777 89999999998864221 23367788888776 344443
No 77
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.46 E-value=2.7e-12 Score=114.97 Aligned_cols=116 Identities=14% Similarity=0.104 Sum_probs=91.5
Q ss_pred CCccCc-ccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCccccc
Q 044234 2 LKSLPR-NISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPIT 79 (276)
Q Consensus 2 L~~LP~-~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~ 79 (276)
++.+|. .+..+++|++|++++|......|..++.+++|++|++++|.++.+|.. ++.+++|++|++++|...+..|..
T Consensus 81 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 160 (390)
T 3o6n_A 81 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160 (390)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhh
Confidence 445554 688899999999999966655677789999999999999999999887 689999999999999777766777
Q ss_pred CCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccc
Q 044234 80 VSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSI 120 (276)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i 120 (276)
+..+++|++|++++|...+ ++ ++.+++|+.|++++|.+
T Consensus 161 ~~~l~~L~~L~l~~n~l~~-~~--~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 161 FQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp TSSCTTCCEEECCSSCCSB-CC--GGGCTTCSEEECCSSCC
T ss_pred ccCCCCCCEEECCCCcCCc-cc--cccccccceeecccccc
Confidence 9999999999999976543 22 34445555555555444
No 78
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=1.7e-13 Score=109.39 Aligned_cols=130 Identities=18% Similarity=0.266 Sum_probs=101.3
Q ss_pred cCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccC-CCCCCCC
Q 044234 9 ISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITV-SSLKCLR 87 (276)
Q Consensus 9 l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~-~~l~~L~ 87 (276)
+.++.+|++|++++| .++.+|......++|++|++++|.++.+ ..++.+++|++|++++|... .+|..+ ..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCC
Confidence 566889999999999 4556766544445999999999999998 67999999999999999654 556444 7899999
Q ss_pred EEeeeCCCCCCcCcc--ccCCCCCCCeeeccCccccccCcc----cccCCCCCCCccEEeccCCC
Q 044234 88 TLKLSGCSKIVKFPE--SVISMEDLSELFLDRTSITEECKM----LQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 88 ~L~l~~~~~~~~lp~--~l~~l~~L~~L~L~~n~i~~~~~~----L~~L~~L~~~L~~L~~~~c~ 146 (276)
+|++++|. ++.+|. .+..+++|+.|++++|.+...... +..+ ++|+.|+++++.
T Consensus 92 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l----~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKV----PQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHC----TTCSEETTEECC
T ss_pred EEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHC----CccceeCCCcCC
Confidence 99999975 467776 788999999999999998743322 2322 356777776653
No 79
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.45 E-value=9e-13 Score=123.34 Aligned_cols=140 Identities=20% Similarity=0.100 Sum_probs=111.5
Q ss_pred CCCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCc-cccCCCCCcEEecCCCCCCCccccc
Q 044234 1 NLKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPV-SIELLSGLVLLNLKDCRNLSTLPIT 79 (276)
Q Consensus 1 ~L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~ 79 (276)
+++++|..+ .+++++|++++|......+..+.++++|++|++++|.++.+++ .++++++|++|++++|......|..
T Consensus 18 ~l~~ip~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 18 NFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp CCSSCCSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CccccCCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence 367788766 3689999999996555556788999999999999999999865 5999999999999999766666688
Q ss_pred CCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccc-c-CcccccCCCCCCCccEEeccCCC
Q 044234 80 VSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITE-E-CKMLQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~-~-~~~L~~L~~L~~~L~~L~~~~c~ 146 (276)
++++++|++|++++|...+..+..++.+++|++|++++|.++. . ...+..+ ++|++|+++++.
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l----~~L~~L~l~~n~ 160 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL----TNLEHLDLSSNK 160 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGC----TTCCEEECTTSC
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhccc----CCCCEEeCcCCc
Confidence 9999999999999976544333468999999999999998864 1 2223333 466888887763
No 80
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.45 E-value=4.4e-13 Score=131.74 Aligned_cols=117 Identities=21% Similarity=0.184 Sum_probs=60.0
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCC-Cceec-CccccCCCCCcEEecCCCCCCCccccc
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGT-AIREL-PVSIELLSGLVLLNLKDCRNLSTLPIT 79 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n-~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~ 79 (276)
|+.+|. + .++|++|+|++|...+..|..+.++++|++|++++| .+..+ |..++++++|++|+|++|...+..|..
T Consensus 16 L~~vP~-l--p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 16 LTQVPQ-V--LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp SSCCCS-S--CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCCC-C--CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 444554 2 345555555555433334455555555555555555 23344 334555555555555555444444555
Q ss_pred CCCCCCCCEEeeeCCCCCCcCccc--cCCCCCCCeeeccCcccc
Q 044234 80 VSSLKCLRTLKLSGCSKIVKFPES--VISMEDLSELFLDRTSIT 121 (276)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~~lp~~--l~~l~~L~~L~L~~n~i~ 121 (276)
++++++|++|++++|...+.+|.. ++.+++|++|++++|.++
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~ 136 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccc
Confidence 555555555555555444434333 455555555555555543
No 81
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=8.9e-13 Score=113.83 Aligned_cols=137 Identities=20% Similarity=0.281 Sum_probs=90.3
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVS 81 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 81 (276)
++.+|. +..+++|++|++++|. ++.++. +..+++|++|++++|.++.++. ++.+++|++|++++|... .++ .+.
T Consensus 58 i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~-~~~-~l~ 131 (291)
T 1h6t_A 58 IKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGIS-DIN-GLV 131 (291)
T ss_dssp CCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCC-CCG-GGG
T ss_pred cccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCC-CCh-hhc
Confidence 344543 6667778888888773 444544 6777788888888887777654 777778888888877433 343 466
Q ss_pred CCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCcccc
Q 044234 82 SLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILS 152 (276)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~ 152 (276)
.+++|+.|++++|... .+ ..+..+++|+.|++++|.+++... + ..+ ++|+.|+++++ .++.++
T Consensus 132 ~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~~N~l~~~~~-l---~~l-~~L~~L~L~~N-~i~~l~ 194 (291)
T 1h6t_A 132 HLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP-L---AGL-TKLQNLYLSKN-HISDLR 194 (291)
T ss_dssp GCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCCCGG-G---TTC-TTCCEEECCSS-CCCBCG
T ss_pred CCCCCCEEEccCCcCC-cc-hhhccCCCCCEEEccCCccccchh-h---cCC-CccCEEECCCC-cCCCCh
Confidence 7777888888776543 33 457777788888888777754322 2 223 46778888776 455554
No 82
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.45 E-value=8e-13 Score=115.74 Aligned_cols=142 Identities=19% Similarity=0.256 Sum_probs=98.7
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCcee---cCccccCCCCCcEEecCCCCCCCcccc
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRE---LPVSIELLSGLVLLNLKDCRNLSTLPI 78 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~---lp~~i~~l~~L~~L~L~~~~~l~~lp~ 78 (276)
++.+|..+. ++|++|++++|......+..+..+++|++|++++|.++. .+..++.+++|++|++++|. +..+|.
T Consensus 112 l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~ 188 (330)
T 1xku_A 112 LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ 188 (330)
T ss_dssp CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCS
T ss_pred CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCc
Confidence 456666553 788888888885554455567788888888888887763 35567888888888888874 445666
Q ss_pred cCCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCc-ccccCCCCCCCccEEeccCCCCCccccc
Q 044234 79 TVSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECK-MLQNLPRLPASIHWILLNGCVSLEILSD 153 (276)
Q Consensus 79 ~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~-~L~~L~~L~~~L~~L~~~~c~~L~~~~~ 153 (276)
.+. ++|++|++++|...+..|..+..+++|+.|++++|.++.... .+..+ ++|+.|++++| .+..++.
T Consensus 189 ~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l----~~L~~L~L~~N-~l~~lp~ 257 (330)
T 1xku_A 189 GLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT----PHLRELHLNNN-KLVKVPG 257 (330)
T ss_dssp SCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS----TTCCEEECCSS-CCSSCCT
T ss_pred ccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC----CCCCEEECCCC-cCccCCh
Confidence 543 788888888876666666777888888888888887764332 22222 46677888777 4555554
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=7.4e-13 Score=114.32 Aligned_cols=132 Identities=21% Similarity=0.308 Sum_probs=106.8
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVS 81 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 81 (276)
++.++. +..+++|++|++++|. ++.++. +..+++|++|++++|.++.+ +.+..+++|+.|++++|.... + ..+.
T Consensus 80 l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~ 153 (291)
T 1h6t_A 80 LTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITD-I-TVLS 153 (291)
T ss_dssp CCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCC-C-GGGG
T ss_pred cCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCc-c-hhhc
Confidence 455666 8889999999999994 555654 88999999999999999988 468999999999999996544 4 4688
Q ss_pred CCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCC
Q 044234 82 SLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~ 146 (276)
.+++|++|++++|... .++. +..+++|+.|++++|.++. ...+ ..+ ++|+.|++++++
T Consensus 154 ~l~~L~~L~L~~N~l~-~~~~-l~~l~~L~~L~L~~N~i~~-l~~l---~~l-~~L~~L~l~~n~ 211 (291)
T 1h6t_A 154 RLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISD-LRAL---AGL-KNLDVLELFSQE 211 (291)
T ss_dssp GCTTCSEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCB-CGGG---TTC-TTCSEEEEEEEE
T ss_pred cCCCCCEEEccCCccc-cchh-hcCCCccCEEECCCCcCCC-Chhh---ccC-CCCCEEECcCCc
Confidence 9999999999998654 4444 8999999999999999864 2333 333 477899988864
No 84
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=7.4e-13 Score=117.73 Aligned_cols=120 Identities=22% Similarity=0.174 Sum_probs=99.0
Q ss_pred CCccCcc-cC-CCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccc
Q 044234 2 LKSLPRN-IS-GLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPI 78 (276)
Q Consensus 2 L~~LP~~-l~-~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~ 78 (276)
|+.++.. +. ++++|++|+|++|......+..+..+++|++|++++|.++.++.. +..+++|+.|+|++|......|.
T Consensus 51 l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~ 130 (361)
T 2xot_A 51 LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN 130 (361)
T ss_dssp CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHH
Confidence 4556554 44 799999999999965544557789999999999999999999764 89999999999999987777788
Q ss_pred cCCCCCCCCEEeeeCCCCCCcCcccc----CCCCCCCeeeccCccccc
Q 044234 79 TVSSLKCLRTLKLSGCSKIVKFPESV----ISMEDLSELFLDRTSITE 122 (276)
Q Consensus 79 ~~~~l~~L~~L~l~~~~~~~~lp~~l----~~l~~L~~L~L~~n~i~~ 122 (276)
.+..+++|++|++++|. +..+|..+ ..+++|+.|++++|.++.
T Consensus 131 ~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 131 AFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp TTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred HhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 89999999999999975 45566544 578999999999998873
No 85
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=1.1e-12 Score=124.19 Aligned_cols=137 Identities=21% Similarity=0.286 Sum_probs=97.0
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVS 81 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 81 (276)
++.+|. +..+++|+.|+|++|. +..++. +..+++|++|+|++|.++.++ .+..+++|+.|+|++|... .++ .+.
T Consensus 55 i~~l~~-l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~-~l~-~l~ 128 (605)
T 1m9s_A 55 IKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGIS-DIN-GLV 128 (605)
T ss_dssp CCCCTT-GGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCC-CCG-GGG
T ss_pred CCCChH-HccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCC-CCc-ccc
Confidence 345553 7778888888888884 444554 677888888888888888775 5788888888888888544 343 477
Q ss_pred CCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCcccc
Q 044234 82 SLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILS 152 (276)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~ 152 (276)
.+++|+.|++++|... .+ ..+..+++|+.|+|++|.+.+... +. .+ ++|+.|++++| .+..++
T Consensus 129 ~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~---~l-~~L~~L~Ls~N-~i~~l~ 191 (605)
T 1m9s_A 129 HLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP-LA---GL-TKLQNLYLSKN-HISDLR 191 (605)
T ss_dssp GCTTCSEEECCSSCCC-CC-GGGGSCTTCSEEECCSSCCCCCGG-GT---TC-TTCCEEECCSS-CCCBCG
T ss_pred CCCccCEEECCCCccC-Cc-hhhcccCCCCEEECcCCcCCCchh-hc---cC-CCCCEEECcCC-CCCCCh
Confidence 7888888888886544 34 457788888888888888764333 32 23 46788888776 455443
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.44 E-value=1.2e-12 Score=113.85 Aligned_cols=137 Identities=19% Similarity=0.309 Sum_probs=109.4
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVS 81 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 81 (276)
++.++. +..+++|++|++++|. ++.++ .+..+++|++|++++|.++.++. +..+++|+.|++++|.. ..++. +.
T Consensus 75 i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~ 148 (308)
T 1h6u_A 75 ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQI-TNISP-LA 148 (308)
T ss_dssp CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GG
T ss_pred CCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCcc-CcCcc-cc
Confidence 455666 8889999999999995 66665 57889999999999999999875 89999999999999954 44554 78
Q ss_pred CCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCcccc
Q 044234 82 SLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILS 152 (276)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~ 152 (276)
.+++|++|++++|.. ..++. +..+++|+.|++++|.+++.. .+.. + ++|+.|++++|. +..++
T Consensus 149 ~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~---l-~~L~~L~L~~N~-l~~~~ 211 (308)
T 1h6u_A 149 GLTNLQYLSIGNAQV-SDLTP-LANLSKLTTLKADDNKISDIS-PLAS---L-PNLIEVHLKNNQ-ISDVS 211 (308)
T ss_dssp GCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCCCCG-GGGG---C-TTCCEEECTTSC-CCBCG
T ss_pred CCCCccEEEccCCcC-CCChh-hcCCCCCCEEECCCCccCcCh-hhcC---C-CCCCEEEccCCc-cCccc
Confidence 899999999999754 45555 889999999999999986432 2333 3 578999999873 55554
No 87
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.44 E-value=9.3e-13 Score=122.20 Aligned_cols=138 Identities=17% Similarity=0.125 Sum_probs=114.3
Q ss_pred CCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCcee---cCccccCCCCCcEEecCCCCCCCccccc-CCCCCC
Q 044234 10 SGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRE---LPVSIELLSGLVLLNLKDCRNLSTLPIT-VSSLKC 85 (276)
Q Consensus 10 ~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~---lp~~i~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~ 85 (276)
..+++|++|++++|...+..|..++.+++|++|++++|.++. +|..++.+++|++|++++|...+.+|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 578999999999997777789999999999999999999985 4566899999999999999777757764 788999
Q ss_pred CCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCccccch
Q 044234 86 LRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILSDV 154 (276)
Q Consensus 86 L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~~~ 154 (276)
|++|++++|...+.+|..+. ++|+.|++++|.++.....+..+ ++|+.|++++| .++.++..
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l----~~L~~L~L~~N-~l~~l~~~ 462 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKL----EALQELNVASN-QLKSVPDG 462 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGC----TTCCEEECCSS-CCCCCCTT
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcC----CCCCEEECCCC-cCCccCHH
Confidence 99999999988777776554 78999999999987433333333 57799999998 57777763
No 88
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.44 E-value=7e-13 Score=130.35 Aligned_cols=143 Identities=20% Similarity=0.207 Sum_probs=115.7
Q ss_pred CCcc-CcccCCCCCCCEEeecCCCCCCcc-ccccCCCCCCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCCcccc
Q 044234 2 LKSL-PRNISGLKSLSTLNLSGTSKFREF-PEITGRMEHLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLSTLPI 78 (276)
Q Consensus 2 L~~L-P~~l~~l~~L~~L~Ls~~~~l~~~-p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~ 78 (276)
++.+ |..|.++++|++|++++|.....+ |..++++++|++|++++|.++.+ |..++++++|++|++++|...+.+|.
T Consensus 36 i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~ 115 (844)
T 3j0a_A 36 IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK 115 (844)
T ss_dssp CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCST
T ss_pred CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccccc
Confidence 3344 567899999999999999767666 78899999999999999999987 77799999999999999987776666
Q ss_pred c--CCCCCCCCEEeeeCCCCCCcCc-cccCCCCCCCeeeccCccccccCc-ccccCCCCCCCccEEeccCCC
Q 044234 79 T--VSSLKCLRTLKLSGCSKIVKFP-ESVISMEDLSELFLDRTSITEECK-MLQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 79 ~--~~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~L~~n~i~~~~~-~L~~L~~L~~~L~~L~~~~c~ 146 (276)
. ++++++|++|++++|...+..+ ..++++++|++|++++|.+..... .+..+. ..+|+.|+++++.
T Consensus 116 ~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~--~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ--GKTLSFFSLAANS 185 (844)
T ss_dssp TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH--HCSSCCCEECCSB
T ss_pred CccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc--CCccceEECCCCc
Confidence 5 8999999999999987766544 578999999999999999874332 122221 1467777777764
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.44 E-value=2.4e-13 Score=118.39 Aligned_cols=146 Identities=16% Similarity=0.163 Sum_probs=111.6
Q ss_pred ccCccc--CCCCCCCEEeecCCCCCCccccccCCC-----CCCcEEEccCCCceecC-ccccCCCCCcEEecCCCCCCCc
Q 044234 4 SLPRNI--SGLKSLSTLNLSGTSKFREFPEITGRM-----EHLSNLHLEGTAIRELP-VSIELLSGLVLLNLKDCRNLST 75 (276)
Q Consensus 4 ~LP~~l--~~l~~L~~L~Ls~~~~l~~~p~~~~~l-----~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~L~~~~~l~~ 75 (276)
.+|..+ ..+++|++|++++|.. +..|..++.+ ++|++|++++|.++.++ ..++.+++|++|++++|...+.
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNILNLRNVSW-ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp CCCCCSSSCCSCCCSEEEEESCBC-SSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred hhHHHHHHhcCCCccEEEccCCCC-cchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence 467765 8899999999999954 4448777766 89999999999999887 5699999999999999976654
Q ss_pred --ccccC--CCCCCCCEEeeeCCCCCC--cCc-cccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCC
Q 044234 76 --LPITV--SSLKCLRTLKLSGCSKIV--KFP-ESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSL 148 (276)
Q Consensus 76 --lp~~~--~~l~~L~~L~l~~~~~~~--~lp-~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L 148 (276)
+|..+ ..+++|++|++++|...+ .++ ..+..+++|++|++++|.+++... ...+.. .++|++|+++++. +
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~-l~~L~~L~Ls~N~-l 265 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-APSCDW-PSQLNSLNLSFTG-L 265 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-CSCCCC-CTTCCEEECTTSC-C
T ss_pred hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-hhhhhh-cCCCCEEECCCCc-c
Confidence 34444 789999999999986542 333 334678999999999999875331 111111 2688999999874 6
Q ss_pred ccccc
Q 044234 149 EILSD 153 (276)
Q Consensus 149 ~~~~~ 153 (276)
++++.
T Consensus 266 ~~ip~ 270 (312)
T 1wwl_A 266 KQVPK 270 (312)
T ss_dssp SSCCS
T ss_pred Chhhh
Confidence 66665
No 90
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=8.2e-13 Score=105.51 Aligned_cols=112 Identities=18% Similarity=0.243 Sum_probs=91.8
Q ss_pred CCEEeecCCCCCCccccccCCCCCCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCCcccc-cCCCCCCCCEEeee
Q 044234 15 LSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLSTLPI-TVSSLKCLRTLKLS 92 (276)
Q Consensus 15 L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~ 92 (276)
-+.++++++ .++.+|..+. ++|++|++++|.|+.+ |..++.+++|++|+|++|... .+|. .+..+++|++|+++
T Consensus 14 ~~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence 478999998 6788888764 8999999999999998 456999999999999999554 4554 46899999999999
Q ss_pred CCCCCCcCccccCCCCCCCeeeccCccccccCcccccC
Q 044234 93 GCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNL 130 (276)
Q Consensus 93 ~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L 130 (276)
+|...+..+..+..+++|+.|++++|++...|..+..+
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l 127 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYL 127 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHH
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccccccHHHH
Confidence 97655433345899999999999999999877655443
No 91
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.43 E-value=3.2e-12 Score=120.99 Aligned_cols=116 Identities=14% Similarity=0.104 Sum_probs=91.2
Q ss_pred CCccCc-ccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCccccc
Q 044234 2 LKSLPR-NISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPIT 79 (276)
Q Consensus 2 L~~LP~-~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~ 79 (276)
++.+|. .|..+++|++|++++|...+..|..++.+++|++|++++|.++.+|.. ++.+++|++|++++|...+..|..
T Consensus 87 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 166 (597)
T 3oja_B 87 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 166 (597)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh
Confidence 344553 788999999999999976666667789999999999999999999887 699999999999999877777778
Q ss_pred CCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccc
Q 044234 80 VSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSI 120 (276)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i 120 (276)
++.+++|++|++++|...+ ++ ++.+++|+.|++++|.+
T Consensus 167 ~~~l~~L~~L~L~~N~l~~-~~--~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 167 FQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp TTTCTTCCEEECTTSCCSB-CC--GGGCTTCSEEECCSSCC
T ss_pred hhcCCcCcEEECcCCCCCC-cC--hhhhhhhhhhhcccCcc
Confidence 9999999999999976543 22 33344444444444443
No 92
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=1.3e-13 Score=106.98 Aligned_cols=111 Identities=18% Similarity=0.150 Sum_probs=92.6
Q ss_pred ccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCcee-cCccccCCCCCcEEecCCCCCCCc-ccccCC
Q 044234 4 SLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRE-LPVSIELLSGLVLLNLKDCRNLST-LPITVS 81 (276)
Q Consensus 4 ~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~-lp~~i~~l~~L~~L~L~~~~~l~~-lp~~~~ 81 (276)
.+|..+..+++|++|++++|. ++.+ ..++.+++|++|++++|.++. +|..++.+++|++|++++|...+. .+..++
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~ 110 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK 110 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGG
T ss_pred HHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHh
Confidence 678888899999999999994 5555 778899999999999999998 677788899999999999965542 347889
Q ss_pred CCCCCCEEeeeCCCCCCcCc---cccCCCCCCCeeecc
Q 044234 82 SLKCLRTLKLSGCSKIVKFP---ESVISMEDLSELFLD 116 (276)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~lp---~~l~~l~~L~~L~L~ 116 (276)
.+++|++|++++|...+..+ ..+..+++|+.|+++
T Consensus 111 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 111 KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99999999999976544333 368889999999985
No 93
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.41 E-value=2.4e-13 Score=120.22 Aligned_cols=144 Identities=19% Similarity=0.263 Sum_probs=115.1
Q ss_pred CCcc-CcccCCCCCCCEEeecCCCCCCcccc-ccCCCCCCcEEEccCCCceecCc--cccCCCCCcEEecCCCCCCCcc-
Q 044234 2 LKSL-PRNISGLKSLSTLNLSGTSKFREFPE-ITGRMEHLSNLHLEGTAIRELPV--SIELLSGLVLLNLKDCRNLSTL- 76 (276)
Q Consensus 2 L~~L-P~~l~~l~~L~~L~Ls~~~~l~~~p~-~~~~l~~L~~L~L~~n~i~~lp~--~i~~l~~L~~L~L~~~~~l~~l- 76 (276)
++.+ |..+.++++|++|++++|. ++.+|. .++.+++|++|++++|.++.+|. .++.+++|++|++++|...+.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC
Confidence 3445 3468899999999999995 555654 48899999999999999999987 6899999999999999655555
Q ss_pred cccCCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCcc
Q 044234 77 PITVSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEI 150 (276)
Q Consensus 77 p~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~ 150 (276)
+..+.++++|++|++++|...+..|..+..+++|++|++++|.+....... ....++|+.|+++++. ++.
T Consensus 167 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---~~~~~~L~~L~L~~n~-l~~ 236 (353)
T 2z80_A 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF---VDVTSSVECLELRDTD-LDT 236 (353)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHH---HHHTTTEEEEEEESCB-CTT
T ss_pred HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhh---hhhcccccEEECCCCc-ccc
Confidence 567899999999999999887777889999999999999999875222111 0113678999998874 443
No 94
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.41 E-value=1.9e-12 Score=123.99 Aligned_cols=119 Identities=22% Similarity=0.222 Sum_probs=100.5
Q ss_pred CCCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCCcccc-
Q 044234 1 NLKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLSTLPI- 78 (276)
Q Consensus 1 ~L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~- 78 (276)
+|+++|..+. +++++|++++|...+..+..++++++|++|++++|.++.+ |..++++++|++|++++|... .+|.
T Consensus 15 ~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~ 91 (680)
T 1ziw_A 15 KLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDK 91 (680)
T ss_dssp CCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTT
T ss_pred CccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChh
Confidence 3677888664 7999999999965555556789999999999999999988 555999999999999999554 5554
Q ss_pred cCCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccc
Q 044234 79 TVSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITE 122 (276)
Q Consensus 79 ~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~ 122 (276)
.++++++|++|++++|...+..|..++++++|++|++++|.+++
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 135 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSC
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccc
Confidence 69999999999999987766556789999999999999998864
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.41 E-value=1.2e-12 Score=109.41 Aligned_cols=146 Identities=14% Similarity=0.194 Sum_probs=111.7
Q ss_pred CCccCc-ccCCCCCCCEEeecC-CCCCCccc-cccCCCCCCcEEEccCCCceecCccccCCCCCc---EEecCCCCCCCc
Q 044234 2 LKSLPR-NISGLKSLSTLNLSG-TSKFREFP-EITGRMEHLSNLHLEGTAIRELPVSIELLSGLV---LLNLKDCRNLST 75 (276)
Q Consensus 2 L~~LP~-~l~~l~~L~~L~Ls~-~~~l~~~p-~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~---~L~L~~~~~l~~ 75 (276)
++.+|+ .|.++++|++|++++ | .++.++ ..+..+++|++|++++|.++.+|. ++.+++|+ +|++++|..+..
T Consensus 68 l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~ 145 (239)
T 2xwt_C 68 LQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTS 145 (239)
T ss_dssp CCEECTTTEESCTTCCEEEEEEET-TCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCE
T ss_pred cceeCHhHcCCCcCCcEEECCCCC-CeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhh
Confidence 566765 678899999999998 6 455554 678899999999999999999987 88888888 999999944445
Q ss_pred cc-ccCCCCCCCC-EEeeeCCCCCCcCccccCCCCCCCeeeccCcc-ccccCcccccCCCCCCCccEEeccCCCCCcccc
Q 044234 76 LP-ITVSSLKCLR-TLKLSGCSKIVKFPESVISMEDLSELFLDRTS-ITEECKMLQNLPRLPASIHWILLNGCVSLEILS 152 (276)
Q Consensus 76 lp-~~~~~l~~L~-~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~-i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~ 152 (276)
+| ..+.++++|+ +|++++|... .+|......++|+.|++++|+ ++..... .+..+.++|+.|+++++ .++.++
T Consensus 146 i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~--~~~~l~~~L~~L~l~~N-~l~~l~ 221 (239)
T 2xwt_C 146 IPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKD--AFGGVYSGPSLLDVSQT-SVTALP 221 (239)
T ss_dssp ECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTT--TTTTCSBCCSEEECTTC-CCCCCC
T ss_pred cCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHH--HhhccccCCcEEECCCC-ccccCC
Confidence 55 4588999999 9999997654 777655445899999999994 7633221 12222257899999985 567776
Q ss_pred c
Q 044234 153 D 153 (276)
Q Consensus 153 ~ 153 (276)
.
T Consensus 222 ~ 222 (239)
T 2xwt_C 222 S 222 (239)
T ss_dssp C
T ss_pred h
Confidence 5
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=1.6e-12 Score=110.66 Aligned_cols=131 Identities=21% Similarity=0.273 Sum_probs=104.2
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVS 81 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 81 (276)
++.+| .+..+++|++|++++| .++.++. +..+++|++|++++|.++.+|.... ++|+.|++++|.. ..++ .+.
T Consensus 53 i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l-~~~~-~l~ 125 (263)
T 1xeu_A 53 IQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNEL-RDTD-SLI 125 (263)
T ss_dssp CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCC-SBSG-GGT
T ss_pred cccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCcc-CCCh-hhc
Confidence 55677 4788999999999999 4666666 8899999999999999999876443 8999999999954 4455 588
Q ss_pred CCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCC
Q 044234 82 SLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~ 146 (276)
.+++|+.|++++|. +..++ .+..+++|+.|++++|.+++. .. +..+ ++|+.|++++++
T Consensus 126 ~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~---l~~l-~~L~~L~l~~N~ 183 (263)
T 1xeu_A 126 HLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT-GG---LTRL-KKVNWIDLTGQK 183 (263)
T ss_dssp TCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC-TT---STTC-CCCCEEEEEEEE
T ss_pred CcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch-HH---hccC-CCCCEEeCCCCc
Confidence 99999999999976 44555 588999999999999998754 33 3333 467888888764
No 97
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.40 E-value=1.5e-12 Score=114.48 Aligned_cols=139 Identities=17% Similarity=0.284 Sum_probs=104.5
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVS 81 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 81 (276)
++.++. +..+++|+.|++++|. +...+. +..+++|++|++++|.++.++. +..+++|++|++++|... .++ .+.
T Consensus 189 l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~~~ 262 (347)
T 4fmz_A 189 IEDISP-LASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQIS-DIN-AVK 262 (347)
T ss_dssp CCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCG-GGT
T ss_pred cccccc-ccCCCccceeecccCC-CCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccC-CCh-hHh
Confidence 344555 6778999999999984 444444 6788999999999999998876 889999999999998544 443 578
Q ss_pred CCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCc-ccccCCCCCCCccEEeccCCCCCccccc
Q 044234 82 SLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECK-MLQNLPRLPASIHWILLNGCVSLEILSD 153 (276)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~-~L~~L~~L~~~L~~L~~~~c~~L~~~~~ 153 (276)
.+++|++|++++|.. ..++ .+..+++|+.|++++|.+.+... .+..+ ++|+.|++++|. +..++.
T Consensus 263 ~l~~L~~L~l~~n~l-~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQI-SDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGL----TNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp TCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTC----TTCSEEECCSSS-CCCCGG
T ss_pred cCCCcCEEEccCCcc-CCCh-hhcCCCCCCEEECcCCcCCCcChhHhhcc----ccCCEEEccCCc-cccccC
Confidence 899999999999754 4444 47888999999999998864332 13332 477899999986 555443
No 98
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.39 E-value=6.7e-12 Score=115.14 Aligned_cols=103 Identities=18% Similarity=0.098 Sum_probs=67.1
Q ss_pred cCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCE
Q 044234 9 ISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRT 88 (276)
Q Consensus 9 l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~ 88 (276)
++.+++|++|++++|...+.+ .++.+++|++|++++|.++.+| ++.+++|+.|++++|...+ + .++.+++|+.
T Consensus 144 l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~-~--~l~~l~~L~~ 216 (457)
T 3bz5_A 144 VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITK-L--DLNQNIQLTF 216 (457)
T ss_dssp CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSC-C--CCTTCTTCSE
T ss_pred cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCe-e--ccccCCCCCE
Confidence 344555555555555444443 2456677777777777777765 6677777777777774433 3 3667777888
Q ss_pred EeeeCCCCCCcCccccCCCCCCCeeeccCcccc
Q 044234 89 LKLSGCSKIVKFPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 89 L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
|++++|...+ +| ++.+++|+.|++++|.++
T Consensus 217 L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 217 LDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp EECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred EECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 8887765444 55 677777888888877775
No 99
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=7.6e-14 Score=135.05 Aligned_cols=118 Identities=20% Similarity=0.243 Sum_probs=100.0
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVS 81 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 81 (276)
+..+|..+.++++|++|+|++| .++.+|..++.+++|++|+|++|.|+.+|..++.+++|++|+|++|. ++.+|..++
T Consensus 236 l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~ 313 (727)
T 4b8c_D 236 IFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFG 313 (727)
T ss_dssp CSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTT
T ss_pred CCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChhhh
Confidence 5678888889999999999999 45589999999999999999999999999999999999999999994 568999999
Q ss_pred CCCCCCEEeeeCCCCCCcCccccCCCCC-CCeeeccCcccc
Q 044234 82 SLKCLRTLKLSGCSKIVKFPESVISMED-LSELFLDRTSIT 121 (276)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~-L~~L~L~~n~i~ 121 (276)
.+++|++|+|++|...+.+|..+..+.. +..+++++|.++
T Consensus 314 ~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 314 NLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp SCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred cCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc
Confidence 9999999999999888887776544321 123556666555
No 100
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.39 E-value=1.5e-12 Score=120.35 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=43.8
Q ss_pred ccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCC
Q 044234 8 NISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLR 87 (276)
Q Consensus 8 ~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~ 87 (276)
.|..+++|++|++++|...+..| ++.+++|++|++++|.++.+|.. ++|+.|++++|...+..+ ..+++|+
T Consensus 53 ~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N~l~~~~~---~~l~~L~ 123 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVSC---SRGQGKK 123 (487)
T ss_dssp GGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSCCCCEEE---CCCSSCE
T ss_pred HHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCCcCCCCCc---cccCCCC
Confidence 45555555555555553222222 44555555555555554443321 222222222221111111 1234445
Q ss_pred EEeeeCCCCCCcCccccCCCCCCCeeeccCcccc
Q 044234 88 TLKLSGCSKIVKFPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 88 ~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
.|++++|...+..|..++.+++|+.|++++|.++
T Consensus 124 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (487)
T ss_dssp EEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC
T ss_pred EEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC
Confidence 5555554444444444444445555555554443
No 101
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.38 E-value=5.6e-12 Score=110.88 Aligned_cols=112 Identities=21% Similarity=0.347 Sum_probs=77.8
Q ss_pred CccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCC
Q 044234 3 KSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSS 82 (276)
Q Consensus 3 ~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~ 82 (276)
+.+|. +..+++|++|++++| .++.++. +..+++|++|++++|.++.++ .+..+++|++|++++|. +..++. +..
T Consensus 57 ~~~~~-~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~-~~~ 130 (347)
T 4fmz_A 57 ASIQG-IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN-ISDISP-LAN 130 (347)
T ss_dssp CCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC-CCCCGG-GTT
T ss_pred ccchh-hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc-ccCchh-hcc
Confidence 44554 666778888888887 4555555 677788888888888777764 47777888888888774 334444 667
Q ss_pred CCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCcccc
Q 044234 83 LKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 83 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
+++|++|++++|.....++. +..+++|++|++++|.+.
T Consensus 131 l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~ 168 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK 168 (347)
T ss_dssp CTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred CCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC
Confidence 77777777777765555544 677777777777777664
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=3.3e-12 Score=121.06 Aligned_cols=132 Identities=23% Similarity=0.326 Sum_probs=104.5
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVS 81 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 81 (276)
+..+|. +..+++|+.|+|++| .+..+| .+..+++|++|++++|.++.++ .+..+++|+.|+|++|.... + ..+.
T Consensus 77 l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~ 150 (605)
T 1m9s_A 77 LTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-I-TVLS 150 (605)
T ss_dssp CCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCC-C-GGGG
T ss_pred CCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCC-c-hhhc
Confidence 445665 788999999999999 455555 6788999999999999999874 58899999999999986544 4 5688
Q ss_pred CCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCC
Q 044234 82 SLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~ 146 (276)
.+++|+.|+|++|...+..| +..+++|+.|+|++|.+.+ ... +..+ ++|+.|++++|.
T Consensus 151 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~~---l~~l-~~L~~L~L~~N~ 208 (605)
T 1m9s_A 151 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA---LAGL-KNLDVLELFSQE 208 (605)
T ss_dssp SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG---GTTC-TTCSEEECCSEE
T ss_pred ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-ChH---HccC-CCCCEEEccCCc
Confidence 89999999999986655444 8899999999999998864 233 3333 477888888764
No 103
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.37 E-value=4.4e-12 Score=119.00 Aligned_cols=138 Identities=14% Similarity=0.072 Sum_probs=112.8
Q ss_pred CCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecC---ccccCCCCCcEEecCCCCCCCccccc-CCCCCC
Q 044234 10 SGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELP---VSIELLSGLVLLNLKDCRNLSTLPIT-VSSLKC 85 (276)
Q Consensus 10 ~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp---~~i~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~ 85 (276)
..+++|++|++++|...+..|..++.+++|++|++++|.++.++ ..++.+++|++|++++|...+.+|.. +..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 67899999999999777778899999999999999999999765 46899999999999999877757754 778999
Q ss_pred CCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCccccch
Q 044234 86 LRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILSDV 154 (276)
Q Consensus 86 L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~~~ 154 (276)
|++|++++|...+..|..+. ++|+.|++++|.++.....+.. + ++|+.|+++++ .++.++..
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~---l-~~L~~L~L~~N-~l~~l~~~ 491 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTH---L-QALQELNVASN-QLKSVPDG 491 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTS---S-CCCSEEECCSS-CCCCCCTT
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcC---C-CCCCEEECCCC-CCCCCCHH
Confidence 99999999987777766543 6899999999998743333332 2 57899999997 57777763
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.36 E-value=1.9e-13 Score=119.65 Aligned_cols=110 Identities=26% Similarity=0.295 Sum_probs=65.7
Q ss_pred cCCCCCCCEEeecCCCCCCc-cccccCCCCCCcEEEccCCCce-ecCccccCCCCCcEEecCCCCCCC--cccccCCCCC
Q 044234 9 ISGLKSLSTLNLSGTSKFRE-FPEITGRMEHLSNLHLEGTAIR-ELPVSIELLSGLVLLNLKDCRNLS--TLPITVSSLK 84 (276)
Q Consensus 9 l~~l~~L~~L~Ls~~~~l~~-~p~~~~~l~~L~~L~L~~n~i~-~lp~~i~~l~~L~~L~L~~~~~l~--~lp~~~~~l~ 84 (276)
+..+++|++|++++|..... ++..+..+++|++|++++|.++ ..+..++.+++|++|++++|...+ .++..+..++
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 45567777777777643333 5666666777777777777666 345556666777777777663333 2454455566
Q ss_pred CCCEEeeeCC-CCCCc-CccccCCCC-CCCeeeccCc
Q 044234 85 CLRTLKLSGC-SKIVK-FPESVISME-DLSELFLDRT 118 (276)
Q Consensus 85 ~L~~L~l~~~-~~~~~-lp~~l~~l~-~L~~L~L~~n 118 (276)
+|++|++++| ..... ++..+..++ +|++|++++|
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 6666666666 33221 444455556 6666666665
No 105
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.36 E-value=3.8e-12 Score=111.02 Aligned_cols=117 Identities=18% Similarity=0.131 Sum_probs=71.4
Q ss_pred CccC-cccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-----------------ccCCCCCcE
Q 044234 3 KSLP-RNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-----------------IELLSGLVL 64 (276)
Q Consensus 3 ~~LP-~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-----------------i~~l~~L~~ 64 (276)
+.++ ..+..+++|++|++++|. +...+. +..+++|++|++++|.++.++.. ...+++|+.
T Consensus 47 ~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~ 124 (317)
T 3o53_A 47 SQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKN 124 (317)
T ss_dssp CCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEE
T ss_pred CcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCE
Confidence 3343 356677777777777774 333333 66677777777777766654311 112345566
Q ss_pred EecCCCCCCCcccccCCCCCCCCEEeeeCCCCCCcCcccc-CCCCCCCeeeccCcccc
Q 044234 65 LNLKDCRNLSTLPITVSSLKCLRTLKLSGCSKIVKFPESV-ISMEDLSELFLDRTSIT 121 (276)
Q Consensus 65 L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l-~~l~~L~~L~L~~n~i~ 121 (276)
|++++|......+..++.+++|++|++++|...+..+..+ ..+++|++|++++|.++
T Consensus 125 L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp EECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred EECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 6666665444445566677788888888876555545544 35677777777777765
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.35 E-value=2e-12 Score=112.44 Aligned_cols=137 Identities=18% Similarity=0.061 Sum_probs=106.1
Q ss_pred cCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCcee---cCcc--ccCCCCCcEEecCCCCCCCcccc----c
Q 044234 9 ISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRE---LPVS--IELLSGLVLLNLKDCRNLSTLPI----T 79 (276)
Q Consensus 9 l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~---lp~~--i~~l~~L~~L~L~~~~~l~~lp~----~ 79 (276)
+..+++|++|++++|......+..++.+++|++|++++|.+.. ++.. ++.+++|++|++++|.. ..++. .
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l 219 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAAL 219 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHH
Confidence 4568899999999997666667888999999999999998763 4322 47899999999999954 44443 2
Q ss_pred CCCCCCCCEEeeeCCCCCCcCccccCCC---CCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCccccc
Q 044234 80 VSSLKCLRTLKLSGCSKIVKFPESVISM---EDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILSD 153 (276)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~~lp~~l~~l---~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~~ 153 (276)
+..+++|++|++++|...+..|..+..+ ++|++|++++|.++.... .++++|+.|+++++ .++.++.
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~------~~~~~L~~L~Ls~N-~l~~~~~ 289 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK------GLPAKLRVLDLSSN-RLNRAPQ 289 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS------CCCSCCSCEECCSC-CCCSCCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh------hhcCCCCEEECCCC-cCCCCch
Confidence 4678999999999988777768777766 699999999999873221 23478999999987 4665544
No 107
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.35 E-value=4.7e-12 Score=116.17 Aligned_cols=100 Identities=20% Similarity=0.203 Sum_probs=73.5
Q ss_pred cCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCE
Q 044234 9 ISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRT 88 (276)
Q Consensus 9 l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~ 88 (276)
+..+++|++|++++| .++.+| ++.+++|++|++++|.++.++ ++.+++|+.|++++|...+ +| ++.+++|+.
T Consensus 166 ~~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~ 237 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTY 237 (457)
T ss_dssp CTTCTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSE
T ss_pred cccCCcCCEEECCCC-ccceec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCE
Confidence 667889999999998 455566 778889999999999888873 7888899999999885544 66 778888999
Q ss_pred EeeeCCCCCCcCccccCCCCCCCeeeccCcc
Q 044234 89 LKLSGCSKIVKFPESVISMEDLSELFLDRTS 119 (276)
Q Consensus 89 L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~ 119 (276)
|++++|...+. | ++.+++|+.|+++.|.
T Consensus 238 L~l~~N~l~~~-~--~~~l~~L~~L~l~~n~ 265 (457)
T 3bz5_A 238 FDCSVNPLTEL-D--VSTLSKLTTLHCIQTD 265 (457)
T ss_dssp EECCSSCCSCC-C--CTTCTTCCEEECTTCC
T ss_pred EEeeCCcCCCc-C--HHHCCCCCEEeccCCC
Confidence 99988765543 3 3344445444444443
No 108
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=2e-11 Score=97.24 Aligned_cols=127 Identities=20% Similarity=0.175 Sum_probs=98.5
Q ss_pred CCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeee
Q 044234 14 SLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLS 92 (276)
Q Consensus 14 ~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~ 92 (276)
+.+.++++++ .++.+|..+ .++|++|++++|.++.++.. ++.+++|++|++++|...+..+..+..+++|+.|+++
T Consensus 8 ~~~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSK-GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSS-CCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCC-CCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 3578888887 577777654 37999999999999998765 7899999999999996655445557899999999999
Q ss_pred CCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCC
Q 044234 93 GCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 93 ~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~ 146 (276)
+|...+..+..+..+++|++|++++|.++...... +..+ ++|+.|++++++
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~--~~~l-~~L~~L~l~~N~ 135 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI--FDRL-TSLQKIWLHTNP 135 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTC-TTCCEEECCSSC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHH--hcCC-cccCEEEecCCC
Confidence 98766555556789999999999999987433221 1222 567888888764
No 109
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=1.3e-12 Score=104.20 Aligned_cols=115 Identities=15% Similarity=0.204 Sum_probs=95.7
Q ss_pred CCccCcccCCCC-CCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccc-cCCCCCcEEecCCCCCCCcccc-
Q 044234 2 LKSLPRNISGLK-SLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSI-ELLSGLVLLNLKDCRNLSTLPI- 78 (276)
Q Consensus 2 L~~LP~~l~~l~-~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i-~~l~~L~~L~L~~~~~l~~lp~- 78 (276)
++.+|. +..+. +|++|++++|. ++.+ ..++.+++|++|++++|.++.+|+.+ +.+++|++|++++|. ++.+|.
T Consensus 31 l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~ 106 (176)
T 1a9n_A 31 IPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGDL 106 (176)
T ss_dssp CCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC-CCCGGGG
T ss_pred CchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc-CCcchhh
Confidence 455655 44454 99999999994 5555 67889999999999999999998774 999999999999995 467776
Q ss_pred -cCCCCCCCCEEeeeCCCCCCcCccc----cCCCCCCCeeeccCcccc
Q 044234 79 -TVSSLKCLRTLKLSGCSKIVKFPES----VISMEDLSELFLDRTSIT 121 (276)
Q Consensus 79 -~~~~l~~L~~L~l~~~~~~~~lp~~----l~~l~~L~~L~L~~n~i~ 121 (276)
.+..+++|+.|++++|.. ..+|.. +..+++|+.|++++|...
T Consensus 107 ~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 107 DPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp GGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred HhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 788999999999999764 566764 889999999999998775
No 110
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.34 E-value=3.3e-13 Score=118.19 Aligned_cols=139 Identities=22% Similarity=0.265 Sum_probs=91.1
Q ss_pred cCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCC-Ccee--cCccccCCCCCcEEecCCC-CCCCc-cccc
Q 044234 5 LPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGT-AIRE--LPVSIELLSGLVLLNLKDC-RNLST-LPIT 79 (276)
Q Consensus 5 LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n-~i~~--lp~~i~~l~~L~~L~L~~~-~~l~~-lp~~ 79 (276)
+|..+..+++|++|++++|......+..++.+++|++|++++| .++. ++..+..+++|++|++++| ..... ++..
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence 4445666777888888877555456667777778888888877 5663 5555777777888888877 43332 4555
Q ss_pred CCCCC-CCCEEeeeCCC--CC-CcCccccCCCCCCCeeeccCcc-ccc-cCcccccCCCCCCCccEEeccCCCC
Q 044234 80 VSSLK-CLRTLKLSGCS--KI-VKFPESVISMEDLSELFLDRTS-ITE-ECKMLQNLPRLPASIHWILLNGCVS 147 (276)
Q Consensus 80 ~~~l~-~L~~L~l~~~~--~~-~~lp~~l~~l~~L~~L~L~~n~-i~~-~~~~L~~L~~L~~~L~~L~~~~c~~ 147 (276)
+..++ +|++|++++|. .. +.+|..+..+++|++|++++|. +++ ....+. .+ ++|+.|++++|..
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---~l-~~L~~L~l~~~~~ 259 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF---QL-NYLQHLSLSRCYD 259 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG---GC-TTCCEEECTTCTT
T ss_pred HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh---CC-CCCCEeeCCCCCC
Confidence 66677 78888887763 22 4456666677778888887777 432 222232 33 5677788877763
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.34 E-value=2.2e-11 Score=114.51 Aligned_cols=103 Identities=20% Similarity=0.274 Sum_probs=59.1
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVS 81 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 81 (276)
|+.+|..+ +++|++|++++| .++.+| ..+++|++|++++|.|+.+|. +.. +|+.|++++|... .+|.
T Consensus 71 L~~lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~-~lp~--- 137 (571)
T 3cvr_A 71 LSSLPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLT-MLPE--- 137 (571)
T ss_dssp CSCCCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCS-CCCC---
T ss_pred CCccCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCC-CCCC---
Confidence 44566655 366777777777 344666 345677777777777766666 443 6666666666433 3554
Q ss_pred CCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCcccc
Q 044234 82 SLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
.+++|+.|++++|.. ..+|. .+++|+.|++++|.++
T Consensus 138 ~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 138 LPALLEYINADNNQL-TMLPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCS
T ss_pred cCccccEEeCCCCcc-CcCCC---cCCCcCEEECCCCCCC
Confidence 355566666665433 23443 3445555555555543
No 112
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=5.4e-15 Score=120.46 Aligned_cols=113 Identities=20% Similarity=0.270 Sum_probs=53.1
Q ss_pred cCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCC
Q 044234 5 LPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLK 84 (276)
Q Consensus 5 LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~ 84 (276)
+|..+..+++|++|++++| .++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++|.. ..+| .+..++
T Consensus 40 l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l-~~l~-~~~~l~ 115 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI-ASLS-GIEKLV 115 (198)
T ss_dssp CHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEEC-CCHH-HHHHHH
T ss_pred hhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcC-CcCC-ccccCC
Confidence 3334444555555555554 233344 44445555555555555555554444445555555555432 2233 344445
Q ss_pred CCCEEeeeCCCCCCcCc--cccCCCCCCCeeeccCccccc
Q 044234 85 CLRTLKLSGCSKIVKFP--ESVISMEDLSELFLDRTSITE 122 (276)
Q Consensus 85 ~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~L~~n~i~~ 122 (276)
+|++|++++|.. ..++ ..+..+++|++|++++|.+.+
T Consensus 116 ~L~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 116 NLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCCEEECCCCcC-CchhHHHHHhcCCCCCEEEecCCcccc
Confidence 555555555432 2222 234455555555555555543
No 113
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.33 E-value=1.6e-12 Score=112.98 Aligned_cols=147 Identities=15% Similarity=0.072 Sum_probs=111.6
Q ss_pred cCccc--CCCCCCCEEeecCCCCCCccc----cccCCCCCCcEEEccCCCceecC-ccccCCCCCcEEecCCCCCCCc--
Q 044234 5 LPRNI--SGLKSLSTLNLSGTSKFREFP----EITGRMEHLSNLHLEGTAIRELP-VSIELLSGLVLLNLKDCRNLST-- 75 (276)
Q Consensus 5 LP~~l--~~l~~L~~L~Ls~~~~l~~~p----~~~~~l~~L~~L~L~~n~i~~lp-~~i~~l~~L~~L~L~~~~~l~~-- 75 (276)
.|..+ ..+++|++|++++|......+ ..+..+++|++|++++|.++.++ ..++.+++|++|++++|...+.
T Consensus 107 ~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 186 (310)
T 4glp_A 107 MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG 186 (310)
T ss_dssp CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH
T ss_pred hhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh
Confidence 45555 789999999999997655444 23457899999999999999886 4699999999999999976542
Q ss_pred cc--ccCCCCCCCCEEeeeCCCCCCcCcc----ccCCCCCCCeeeccCcccccc-CcccccCCCCCCCccEEeccCCCCC
Q 044234 76 LP--ITVSSLKCLRTLKLSGCSKIVKFPE----SVISMEDLSELFLDRTSITEE-CKMLQNLPRLPASIHWILLNGCVSL 148 (276)
Q Consensus 76 lp--~~~~~l~~L~~L~l~~~~~~~~lp~----~l~~l~~L~~L~L~~n~i~~~-~~~L~~L~~L~~~L~~L~~~~c~~L 148 (276)
++ ..+..+++|++|++++|.. +.++. .++.+++|++|++++|.+.+. ...+..+.. +++|++|+++++ .+
T Consensus 187 ~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~-~~~L~~L~Ls~N-~l 263 (310)
T 4glp_A 187 LMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW-SSALNSLNLSFA-GL 263 (310)
T ss_dssp HHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC-CTTCCCEECCSS-CC
T ss_pred hhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC-cCcCCEEECCCC-CC
Confidence 32 3346899999999999765 44444 257889999999999999765 233433322 268999999987 56
Q ss_pred ccccch
Q 044234 149 EILSDV 154 (276)
Q Consensus 149 ~~~~~~ 154 (276)
+.++..
T Consensus 264 ~~lp~~ 269 (310)
T 4glp_A 264 EQVPKG 269 (310)
T ss_dssp CSCCSC
T ss_pred Cchhhh
Confidence 677663
No 114
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.32 E-value=2.6e-11 Score=111.14 Aligned_cols=108 Identities=17% Similarity=0.312 Sum_probs=64.7
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVS 81 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 81 (276)
++.+|+ ++++++|++|++++| .++.+|... .+|++|++++|.++.+| .++.+++|+.|++++|... .+|..
T Consensus 143 l~~lp~-~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~-~l~~~-- 213 (454)
T 1jl5_A 143 LEKLPE-LQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK-KLPDL-- 213 (454)
T ss_dssp CSSCCC-CTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-SCCCC--
T ss_pred CCCCcc-cCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC-cCCCC--
Confidence 344553 666666666666666 333455432 35666666666666665 4666677777777666433 34432
Q ss_pred CCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCcccc
Q 044234 82 SLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
.++|++|++++|.. ..+|. ++.+++|++|++++|.++
T Consensus 214 -~~~L~~L~l~~n~l-~~lp~-~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 214 -PLSLESIVAGNNIL-EELPE-LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp -CTTCCEEECCSSCC-SSCCC-CTTCTTCCEEECCSSCCS
T ss_pred -cCcccEEECcCCcC-Ccccc-cCCCCCCCEEECCCCcCC
Confidence 24666666666543 36664 777777888888777765
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=3.3e-12 Score=120.21 Aligned_cols=112 Identities=21% Similarity=0.199 Sum_probs=94.7
Q ss_pred CCCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcc-ccc
Q 044234 1 NLKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTL-PIT 79 (276)
Q Consensus 1 ~L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~l-p~~ 79 (276)
+|+.+|. ++.+++|+.|++++| .++.+|..++.+++|++|++++|.|+.+| .++.+++|+.|+|++|...+.. |..
T Consensus 452 ~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~ 528 (567)
T 1dce_A 452 DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQP 528 (567)
T ss_dssp CCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGG
T ss_pred CCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHH
Confidence 3677887 999999999999999 56689999999999999999999999998 8999999999999999766655 899
Q ss_pred CCCCCCCCEEeeeCCCCCCcCcc---ccCCCCCCCeeec
Q 044234 80 VSSLKCLRTLKLSGCSKIVKFPE---SVISMEDLSELFL 115 (276)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~~lp~---~l~~l~~L~~L~L 115 (276)
++.+++|+.|++++|...+..|. .+..+++|+.|++
T Consensus 529 l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 529 LVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred HhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999999999999765444332 1234778888864
No 116
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.30 E-value=5.9e-11 Score=108.76 Aligned_cols=101 Identities=22% Similarity=0.326 Sum_probs=62.6
Q ss_pred CCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeecc
Q 044234 37 EHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLD 116 (276)
Q Consensus 37 ~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~ 116 (276)
++|++|++++|.++.+| .++++++|++|++++|.. ..+|.. ..+|++|++++|.. ..+| .++.+++|+.|+++
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l-~~lp~~---~~~L~~L~L~~n~l-~~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSL-KKLPDL---PPSLEFIAAGNNQL-EELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcC-cccCCC---cccccEEECcCCcC-CcCc-cccCCCCCCEEECC
Confidence 46777777777777766 477777777777777643 345543 24677777777543 3355 46777777777777
Q ss_pred CccccccCcccccCCCCCCCccEEeccCCCCCcccc
Q 044234 117 RTSITEECKMLQNLPRLPASIHWILLNGCVSLEILS 152 (276)
Q Consensus 117 ~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~ 152 (276)
+|.++ .++..+.++++|++++| .++.++
T Consensus 204 ~N~l~-------~l~~~~~~L~~L~l~~n-~l~~lp 231 (454)
T 1jl5_A 204 NNSLK-------KLPDLPLSLESIVAGNN-ILEELP 231 (454)
T ss_dssp SSCCS-------SCCCCCTTCCEEECCSS-CCSSCC
T ss_pred CCcCC-------cCCCCcCcccEEECcCC-cCCccc
Confidence 77654 23344456666666665 334443
No 117
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.30 E-value=3.3e-11 Score=110.47 Aligned_cols=125 Identities=18% Similarity=0.297 Sum_probs=78.4
Q ss_pred cCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCE
Q 044234 9 ISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRT 88 (276)
Q Consensus 9 l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~ 88 (276)
++.+++|++|++++|. ++.++ .+..+++|++|++++|.++.++. +..+++|+.|++++|...+ ++. +..+++|+.
T Consensus 217 ~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~ 291 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISN-ISP-LAGLTALTN 291 (466)
T ss_dssp GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSE
T ss_pred ccccCCCCEEECCCCC-cccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCc-ccc-ccCCCccCe
Confidence 5557777788877773 44443 45567777777777777776654 6777777777777774433 333 666777777
Q ss_pred EeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCC
Q 044234 89 LKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGC 145 (276)
Q Consensus 89 L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c 145 (276)
|++++|...+ ++. ++.+++|+.|++++|.+.+... +..+ ++|+.|++++|
T Consensus 292 L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l----~~L~~L~l~~n 341 (466)
T 1o6v_A 292 LELNENQLED-ISP-ISNLKNLTYLTLYFNNISDISP-VSSL----TKLQRLFFYNN 341 (466)
T ss_dssp EECCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCGG-GGGC----TTCCEEECCSS
T ss_pred EEcCCCcccC-chh-hcCCCCCCEEECcCCcCCCchh-hccC----ccCCEeECCCC
Confidence 7777765433 333 5667777777777776653222 2222 35566666665
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.30 E-value=3.7e-11 Score=112.93 Aligned_cols=119 Identities=20% Similarity=0.295 Sum_probs=64.8
Q ss_pred CCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEee
Q 044234 12 LKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKL 91 (276)
Q Consensus 12 l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l 91 (276)
+++|++|++++| .++.+|. +.. +|++|++++|.++.+|. .+++|+.|++++|.. ..+|. .+++|++|++
T Consensus 99 l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~L 167 (571)
T 3cvr_A 99 PASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQL-TMLPE---LPTSLEVLSV 167 (571)
T ss_dssp CTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC-SCCCC---CCTTCCEEEC
T ss_pred cCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCcc-CcCCC---cCCCcCEEEC
Confidence 566666666666 3334555 433 66666666666666655 456666666666643 33554 3556666666
Q ss_pred eCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCc-------cEEeccCCCCCccccc
Q 044234 92 SGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASI-------HWILLNGCVSLEILSD 153 (276)
Q Consensus 92 ~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L-------~~L~~~~c~~L~~~~~ 153 (276)
++|.. +.+|. +. ++|+.|++++|.++. +|.++.+| +.|+++++ .++.++.
T Consensus 168 s~N~L-~~lp~-l~--~~L~~L~Ls~N~L~~-------lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp~ 224 (571)
T 3cvr_A 168 RNNQL-TFLPE-LP--ESLEALDVSTNLLES-------LPAVPVRNHHSEETEIFFRCREN-RITHIPE 224 (571)
T ss_dssp CSSCC-SCCCC-CC--TTCCEEECCSSCCSS-------CCCCC--------CCEEEECCSS-CCCCCCG
T ss_pred CCCCC-CCcch-hh--CCCCEEECcCCCCCc-------hhhHHHhhhcccccceEEecCCC-cceecCH
Confidence 66543 33555 43 566666666665541 11122244 66666665 4555554
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.29 E-value=2.3e-11 Score=111.53 Aligned_cols=131 Identities=22% Similarity=0.338 Sum_probs=102.3
Q ss_pred CccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCC
Q 044234 3 KSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSS 82 (276)
Q Consensus 3 ~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~ 82 (276)
+.++ .+..+++|++|++++|. +...+. +..+++|++|++++|.++.++. +..+++|+.|++++|...+ ++. +..
T Consensus 234 ~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~ 307 (466)
T 1o6v_A 234 KDIG-TLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLED-ISP-ISN 307 (466)
T ss_dssp CCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC-CGG-GGG
T ss_pred ccch-hhhcCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccC-chh-hcC
Confidence 3343 36778999999999995 444444 7889999999999999998876 8899999999999986554 443 778
Q ss_pred CCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCC
Q 044234 83 LKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 83 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~ 146 (276)
+++|+.|++++|...+..| +..+++|+.|++++|.+++. .. +..+ ++|+.|++++|.
T Consensus 308 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~---l~~l-~~L~~L~l~~n~ 364 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SS---LANL-TNINWLSAGHNQ 364 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GG---GTTC-TTCCEEECCSSC
T ss_pred CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hh---hccC-CCCCEEeCCCCc
Confidence 9999999999987655544 77889999999999988643 33 3333 577999999885
No 120
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.29 E-value=1.5e-11 Score=107.24 Aligned_cols=132 Identities=19% Similarity=0.138 Sum_probs=80.1
Q ss_pred CCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCc-cccCCCCCcEEecCCCCCCCcccccC-CCCCCCCEE
Q 044234 12 LKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPV-SIELLSGLVLLNLKDCRNLSTLPITV-SSLKCLRTL 89 (276)
Q Consensus 12 l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~~-~~l~~L~~L 89 (276)
.++|++|++++|. +..++. ..+++|++|++++|.++.+++ .++.+++|++|++++|...+..+..+ ..+++|++|
T Consensus 98 ~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 98 GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp CTTCCEEECCSSC-CSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred CCCcCEEECCCCc-cCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEE
Confidence 4667777777764 333332 235667777777777776644 46777777777777775555445444 356777777
Q ss_pred eeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCccccc
Q 044234 90 KLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILSD 153 (276)
Q Consensus 90 ~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~~ 153 (276)
++++|.. ..++. ...+++|++|++++|.++.....+..+ ++|+.|+++++ .++.++.
T Consensus 175 ~L~~N~l-~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l----~~L~~L~L~~N-~l~~l~~ 231 (317)
T 3o53_A 175 NLQYNFI-YDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSA----AGVTWISLRNN-KLVLIEK 231 (317)
T ss_dssp ECTTSCC-CEEEC-CCCCTTCCEEECCSSCCCEECGGGGGG----TTCSEEECTTS-CCCEECT
T ss_pred ECCCCcC-ccccc-ccccccCCEEECCCCcCCcchhhhccc----CcccEEECcCC-cccchhh
Confidence 7777543 33333 334677777777777776443333322 45677777776 4555554
No 121
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.28 E-value=2.2e-11 Score=97.14 Aligned_cols=95 Identities=21% Similarity=0.246 Sum_probs=80.6
Q ss_pred CCCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCccccc
Q 044234 1 NLKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPIT 79 (276)
Q Consensus 1 ~L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~ 79 (276)
+|+.+|..+. ++|++|++++|...+..|..++.+++|++|++++|.|+.+|.. +..+++|++|+|++|......+..
T Consensus 23 ~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 100 (174)
T 2r9u_A 23 RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGA 100 (174)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHH
Confidence 3678888764 8999999999966655688899999999999999999999887 689999999999999655443445
Q ss_pred CCCCCCCCEEeeeCCCCC
Q 044234 80 VSSLKCLRTLKLSGCSKI 97 (276)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~ 97 (276)
+..+++|++|++++|...
T Consensus 101 ~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTTCTTCSEEECCSSCBC
T ss_pred hccccCCCEEEeCCCCcc
Confidence 889999999999997654
No 122
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.28 E-value=2.7e-11 Score=96.16 Aligned_cols=97 Identities=24% Similarity=0.274 Sum_probs=82.2
Q ss_pred CCCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCccccc
Q 044234 1 NLKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPIT 79 (276)
Q Consensus 1 ~L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~ 79 (276)
+|+.+|..+ .++|++|++++|...+..|..+..+++|++|++++|.|+.+|.. +..+++|++|+|++|...+..+..
T Consensus 20 ~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~ 97 (170)
T 3g39_A 20 SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA 97 (170)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHH
Confidence 367888866 48999999999966655688899999999999999999999876 689999999999999665554556
Q ss_pred CCCCCCCCEEeeeCCCCCCc
Q 044234 80 VSSLKCLRTLKLSGCSKIVK 99 (276)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~~ 99 (276)
+..+++|++|++++|.....
T Consensus 98 ~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 98 FDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TTTCTTCCEEECCSSCBCTT
T ss_pred hcCCCCCCEEEeCCCCCCCC
Confidence 89999999999999865543
No 123
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.26 E-value=2.5e-11 Score=112.14 Aligned_cols=131 Identities=20% Similarity=0.146 Sum_probs=78.2
Q ss_pred CCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCCcccccCC-CCCCCCEEe
Q 044234 13 KSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLSTLPITVS-SLKCLRTLK 90 (276)
Q Consensus 13 ~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~~~-~l~~L~~L~ 90 (276)
++|++|++++|......+. .+++|++|++++|.++.+ |..++.+++|+.|++++|...+..|..+. .+++|+.|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 5666666666643332222 356677777777777765 33466777777777777766665565554 567777777
Q ss_pred eeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCccccc
Q 044234 91 LSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILSD 153 (276)
Q Consensus 91 l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~~ 153 (276)
+++|... .+|. ...+++|+.|++++|.+++....+..+ ++|+.|+++++ .+..++.
T Consensus 176 Ls~N~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l----~~L~~L~Ls~N-~l~~lp~ 231 (487)
T 3oja_A 176 LQYNFIY-DVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSA----AGVTWISLRNN-KLVLIEK 231 (487)
T ss_dssp CTTSCCC-EEEC-CCCCTTCCEEECCSSCCCEECGGGGGG----TTCSEEECTTS-CCCEECT
T ss_pred cCCCccc-cccc-cccCCCCCEEECCCCCCCCCCHhHcCC----CCccEEEecCC-cCcccch
Confidence 7776543 3333 335667777777777766544433322 35567777665 3444444
No 124
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=2.7e-11 Score=106.71 Aligned_cols=107 Identities=20% Similarity=0.193 Sum_probs=85.6
Q ss_pred CEEeecCCCCCCccccccCCCCCCcEEEccC-CCceecCc-cccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeC
Q 044234 16 STLNLSGTSKFREFPEITGRMEHLSNLHLEG-TAIRELPV-SIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSG 93 (276)
Q Consensus 16 ~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~-n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~ 93 (276)
..++.+++..++.+|. +..+++|++|+|++ |.|+.++. .|+++++|+.|+|++|...+..|..|.++++|+.|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3457777545777888 88899999999996 99998875 589999999999999977776677788999999999999
Q ss_pred CCCCCcCccc-cCCCCCCCeeeccCccccccCc
Q 044234 94 CSKIVKFPES-VISMEDLSELFLDRTSITEECK 125 (276)
Q Consensus 94 ~~~~~~lp~~-l~~l~~L~~L~L~~n~i~~~~~ 125 (276)
|.+. .+|.. +..+. |+.|++.+|.+...|.
T Consensus 90 N~l~-~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALE-SLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCS-CCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred Cccc-eeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 7554 55544 44444 9999999999987774
No 125
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.23 E-value=8.3e-11 Score=103.94 Aligned_cols=91 Identities=16% Similarity=0.206 Sum_probs=53.2
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCcccc-ccCCCCCCcEEEccCCCce-ecCcc-ccCCCCCcEEe-cCCCCCCCccc
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPE-ITGRMEHLSNLHLEGTAIR-ELPVS-IELLSGLVLLN-LKDCRNLSTLP 77 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~-~~~~l~~L~~L~L~~n~i~-~lp~~-i~~l~~L~~L~-L~~~~~l~~lp 77 (276)
|+++|..+ .+++++|+|++| .++.+|. .+.++++|++|++++|.+. .+|.. |.++++++.+. +++|......|
T Consensus 21 Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 21 VTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp CCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence 56667655 356777777776 4555553 5667777777777777654 34433 56666655433 33333333334
Q ss_pred ccCCCCCCCCEEeeeCCC
Q 044234 78 ITVSSLKCLRTLKLSGCS 95 (276)
Q Consensus 78 ~~~~~l~~L~~L~l~~~~ 95 (276)
..+..+++|++|++++|.
T Consensus 98 ~~f~~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTG 115 (350)
T ss_dssp TSBCCCTTCCEEEEEEEC
T ss_pred hhhhhccccccccccccc
Confidence 555666666666666654
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.23 E-value=1.8e-10 Score=109.46 Aligned_cols=60 Identities=27% Similarity=0.490 Sum_probs=31.4
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDC 70 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~ 70 (276)
|+.+|..+. ++|++|++++| .++.+|. .+++|++|++++|.++.+|. .+++|++|++++|
T Consensus 52 L~~lp~~l~--~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 52 LTTLPDCLP--AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CSCCCSCCC--TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred cCccChhhC--CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 445555443 56666666665 3444544 34555555555555555554 3444444544444
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.21 E-value=1.3e-10 Score=102.70 Aligned_cols=151 Identities=14% Similarity=0.166 Sum_probs=100.2
Q ss_pred CCCccCc-ccCCCCCCCEEeecCCCCCCccc-cccCCCCCCcE-EEccCCCceecCc-cccCCCCCcEEecCCCCCCCcc
Q 044234 1 NLKSLPR-NISGLKSLSTLNLSGTSKFREFP-EITGRMEHLSN-LHLEGTAIRELPV-SIELLSGLVLLNLKDCRNLSTL 76 (276)
Q Consensus 1 ~L~~LP~-~l~~l~~L~~L~Ls~~~~l~~~p-~~~~~l~~L~~-L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~l 76 (276)
+|+.+|+ .|.++++|++|+|++|...+.+| ..+.+++++++ +.+.+|.++.+++ .++.+++|++|++++|......
T Consensus 41 ~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~ 120 (350)
T 4ay9_X 41 KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP 120 (350)
T ss_dssp CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCC
T ss_pred cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCC
Confidence 3567775 47778888888888886666665 35667777665 4555678887744 4788888888888887554444
Q ss_pred cccCCCCCCCCEEeeeCCCCCCcCcc-ccCCCC-CCCeeeccCccccccCcccccCCCCCCCccEEeccCCCCCccccch
Q 044234 77 PITVSSLKCLRTLKLSGCSKIVKFPE-SVISME-DLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCVSLEILSDV 154 (276)
Q Consensus 77 p~~~~~l~~L~~L~l~~~~~~~~lp~-~l~~l~-~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~~L~~~~~~ 154 (276)
+..+....++..|++.+++.+..++. .+..+. .++.|++++|.++......-. ...++.+++.++..++.++..
T Consensus 121 ~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~----~~~L~~l~l~~~n~l~~i~~~ 196 (350)
T 4ay9_X 121 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN----GTQLDELNLSDNNNLEELPND 196 (350)
T ss_dssp CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST----TEEEEEEECTTCTTCCCCCTT
T ss_pred chhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc----ccchhHHhhccCCcccCCCHH
Confidence 44555666777888877666666654 344443 577788888877633222111 135778888877788888764
Q ss_pred h
Q 044234 155 L 155 (276)
Q Consensus 155 ~ 155 (276)
.
T Consensus 197 ~ 197 (350)
T 4ay9_X 197 V 197 (350)
T ss_dssp T
T ss_pred H
Confidence 3
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.21 E-value=2.3e-10 Score=108.69 Aligned_cols=119 Identities=28% Similarity=0.418 Sum_probs=64.8
Q ss_pred CCccCcccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCC
Q 044234 2 LKSLPRNISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVS 81 (276)
Q Consensus 2 L~~LP~~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~ 81 (276)
++.+|. .+++|++|++++| .++.+|. .+++|++|++++|.++.+|. .+++|+.|++++|. +..+|..
T Consensus 73 l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~-- 139 (622)
T 3g06_A 73 LTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL-- 139 (622)
T ss_dssp CSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC--
T ss_pred CCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC--
Confidence 344454 2556666666666 3445554 45666666666666666655 44566666666663 3345542
Q ss_pred CCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCC
Q 044234 82 SLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGC 145 (276)
Q Consensus 82 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c 145 (276)
+++|++|++++|. +..+|. .+.+|+.|++++|.++. ++..+++|+.|+++++
T Consensus 140 -l~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~l~~-------l~~~~~~L~~L~Ls~N 191 (622)
T 3g06_A 140 -PPGLQELSVSDNQ-LASLPA---LPSELCKLWAYNNQLTS-------LPMLPSGLQELSVSDN 191 (622)
T ss_dssp -CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSC-------CCCCCTTCCEEECCSS
T ss_pred -CCCCCEEECcCCc-CCCcCC---ccCCCCEEECCCCCCCC-------CcccCCCCcEEECCCC
Confidence 3566666666653 333443 23455566665555432 2333455666666655
No 129
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.09 E-value=4.2e-10 Score=99.01 Aligned_cols=95 Identities=21% Similarity=0.230 Sum_probs=78.0
Q ss_pred CCCccCcccCCCCCCCEEeecC-CCCCCccc-cccCCCCCCcEEEccCCCceecCc-cccCCCCCcEEecCCCCCCCccc
Q 044234 1 NLKSLPRNISGLKSLSTLNLSG-TSKFREFP-EITGRMEHLSNLHLEGTAIRELPV-SIELLSGLVLLNLKDCRNLSTLP 77 (276)
Q Consensus 1 ~L~~LP~~l~~l~~L~~L~Ls~-~~~l~~~p-~~~~~l~~L~~L~L~~n~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp 77 (276)
+|+.+|. +..+++|++|+|++ | .++.++ ..++.+++|++|+|++|.|+.+++ .|+++++|+.|+|++|... .+|
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~ 96 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLS 96 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCC
T ss_pred CCCccCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeC
Confidence 3788999 99999999999997 7 455554 789999999999999999999866 5899999999999999654 566
Q ss_pred ccCCCCCCCCEEeeeCCCCCC
Q 044234 78 ITVSSLKCLRTLKLSGCSKIV 98 (276)
Q Consensus 78 ~~~~~l~~L~~L~l~~~~~~~ 98 (276)
..+....+|+.|++.+|....
T Consensus 97 ~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 97 WKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp STTTCSCCCCEEECCSSCCCC
T ss_pred HHHcccCCceEEEeeCCCccC
Confidence 554444449999999986543
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.09 E-value=3.1e-13 Score=109.93 Aligned_cols=127 Identities=17% Similarity=0.227 Sum_probs=96.5
Q ss_pred CCCEEeecCCC-CCCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeee
Q 044234 14 SLSTLNLSGTS-KFREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLS 92 (276)
Q Consensus 14 ~L~~L~Ls~~~-~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~ 92 (276)
.|+...++++. .++.+|..+..+++|++|++++|.++.+| .++.+++|++|++++|. +..+|..+..+++|+.|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECc
Confidence 34445554431 24445558889999999999999999998 89999999999999995 45788777778999999999
Q ss_pred CCCCCCcCccccCCCCCCCeeeccCccccccCcccccCCCCCCCccEEeccCCC
Q 044234 93 GCSKIVKFPESVISMEDLSELFLDRTSITEECKMLQNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 93 ~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~~L~~L~~L~~~L~~L~~~~c~ 146 (276)
+|.. ..+| .+..+++|+.|++++|.++... .+..+..+ ++|++|++++++
T Consensus 102 ~N~l-~~l~-~~~~l~~L~~L~l~~N~i~~~~-~~~~l~~l-~~L~~L~l~~N~ 151 (198)
T 1ds9_A 102 YNQI-ASLS-GIEKLVNLRVLYMSNNKITNWG-EIDKLAAL-DKLEDLLLAGNP 151 (198)
T ss_dssp EEEC-CCHH-HHHHHHHSSEEEESEEECCCHH-HHHHHTTT-TTCSEEEECSCH
T ss_pred CCcC-CcCC-ccccCCCCCEEECCCCcCCchh-HHHHHhcC-CCCCEEEecCCc
Confidence 9754 4566 5888999999999999986321 11122233 467899998874
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.03 E-value=2.4e-11 Score=108.67 Aligned_cols=65 Identities=23% Similarity=0.179 Sum_probs=32.8
Q ss_pred ccCCCCCCCEEeecCCCC---CCcccccc-------CCCCCCcEEEccCCCcee-----cCccccCCCCCcEEecCCCCC
Q 044234 8 NISGLKSLSTLNLSGTSK---FREFPEIT-------GRMEHLSNLHLEGTAIRE-----LPVSIELLSGLVLLNLKDCRN 72 (276)
Q Consensus 8 ~l~~l~~L~~L~Ls~~~~---l~~~p~~~-------~~l~~L~~L~L~~n~i~~-----lp~~i~~l~~L~~L~L~~~~~ 72 (276)
.+..+++|++|++++|.. ...+|..+ ..+++|++|++++|.++. ++..+..+++|++|++++|..
T Consensus 55 ~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 55 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 344555666666665421 11223222 455566666666655553 444455555555555555543
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.02 E-value=6.6e-11 Score=105.75 Aligned_cols=143 Identities=13% Similarity=0.081 Sum_probs=107.4
Q ss_pred cCcccCCCCCCCEEeecCCCCC----CccccccCCC---------CCCcEEEccCCCce--ecC---ccccCCCCCcEEe
Q 044234 5 LPRNISGLKSLSTLNLSGTSKF----REFPEITGRM---------EHLSNLHLEGTAIR--ELP---VSIELLSGLVLLN 66 (276)
Q Consensus 5 LP~~l~~l~~L~~L~Ls~~~~l----~~~p~~~~~l---------~~L~~L~L~~n~i~--~lp---~~i~~l~~L~~L~ 66 (276)
+|..+..+++|++|++++|... ..++..+..+ ++|++|++++|.++ .++ ..+..+++|+.|+
T Consensus 114 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 193 (386)
T 2ca6_A 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 193 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEE
Confidence 5666778999999999999643 2356666556 89999999999986 344 4577889999999
Q ss_pred cCCCCCCC-----cccccCCCCCCCCEEeeeCCCCC----CcCccccCCCCCCCeeeccCcccccc-----CcccccCCC
Q 044234 67 LKDCRNLS-----TLPITVSSLKCLRTLKLSGCSKI----VKFPESVISMEDLSELFLDRTSITEE-----CKMLQNLPR 132 (276)
Q Consensus 67 L~~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~----~~lp~~l~~l~~L~~L~L~~n~i~~~-----~~~L~~L~~ 132 (276)
+++|.... ..|..+..+++|++|++++|... ..+|..+..+++|+.|++++|.++.. ...+.. ..
T Consensus 194 L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~ 272 (386)
T 2ca6_A 194 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK-LE 272 (386)
T ss_dssp CCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT-CS
T ss_pred CcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh-cc
Confidence 99996542 34447788999999999998753 66788889999999999999998743 111211 01
Q ss_pred CCCCccEEeccCCCCCcc
Q 044234 133 LPASIHWILLNGCVSLEI 150 (276)
Q Consensus 133 L~~~L~~L~~~~c~~L~~ 150 (276)
.++|+.|++++|. +..
T Consensus 273 -~~~L~~L~L~~n~-i~~ 288 (386)
T 2ca6_A 273 -NIGLQTLRLQYNE-IEL 288 (386)
T ss_dssp -SCCCCEEECCSSC-CBH
T ss_pred -CCCeEEEECcCCc-CCH
Confidence 2578999999985 444
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.00 E-value=3.8e-11 Score=106.55 Aligned_cols=113 Identities=13% Similarity=0.094 Sum_probs=66.4
Q ss_pred cCCCCCCCEEeecCCCCCCccc----cccCCCC-CCcEEEccCCCceec-CccccCC-----CCCcEEecCCCCCCCccc
Q 044234 9 ISGLKSLSTLNLSGTSKFREFP----EITGRME-HLSNLHLEGTAIREL-PVSIELL-----SGLVLLNLKDCRNLSTLP 77 (276)
Q Consensus 9 l~~l~~L~~L~Ls~~~~l~~~p----~~~~~l~-~L~~L~L~~n~i~~l-p~~i~~l-----~~L~~L~L~~~~~l~~lp 77 (276)
+...++|++|++++|......+ +.+..++ +|++|++++|.++.. +..+..+ ++|++|++++|......+
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 3434558888888874333222 5556666 788888888777755 3334443 777777777775444433
Q ss_pred cc----CCCC-CCCCEEeeeCCCCCCcCccc----cCC-CCCCCeeeccCcccc
Q 044234 78 IT----VSSL-KCLRTLKLSGCSKIVKFPES----VIS-MEDLSELFLDRTSIT 121 (276)
Q Consensus 78 ~~----~~~l-~~L~~L~l~~~~~~~~lp~~----l~~-l~~L~~L~L~~n~i~ 121 (276)
.. +..+ ++|++|++++|......+.. +.. .++|++|++++|.+.
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 32 2233 67777777776544333322 223 246777777777665
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.91 E-value=3.2e-10 Score=100.59 Aligned_cols=129 Identities=18% Similarity=0.159 Sum_probs=93.9
Q ss_pred EEeecCCCCCCccccccCCCCCCcEEEccCCCceecC-----ccccCCC-CCcEEecCCCCCCCcccccCCCC-----CC
Q 044234 17 TLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELP-----VSIELLS-GLVLLNLKDCRNLSTLPITVSSL-----KC 85 (276)
Q Consensus 17 ~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp-----~~i~~l~-~L~~L~L~~~~~l~~lp~~~~~l-----~~ 85 (276)
.++++.|...+.+|..+...++|++|++++|.++..+ ..+..++ +|++|++++|......+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4678888777788888887888999999999999876 4578888 99999999997666656555554 89
Q ss_pred CCEEeeeCCCCCCcCccc----cCCC-CCCCeeeccCccccccCcc-c-ccCCCCCCCccEEeccCC
Q 044234 86 LRTLKLSGCSKIVKFPES----VISM-EDLSELFLDRTSITEECKM-L-QNLPRLPASIHWILLNGC 145 (276)
Q Consensus 86 L~~L~l~~~~~~~~lp~~----l~~l-~~L~~L~L~~n~i~~~~~~-L-~~L~~L~~~L~~L~~~~c 145 (276)
|++|++++|......+.. +..+ ++|++|++++|.++..... + ..+..++.+|++|++++|
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 148 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN 148 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence 999999998766555543 4444 8999999999998743221 1 112222345555555554
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.89 E-value=1.2e-10 Score=106.13 Aligned_cols=110 Identities=22% Similarity=0.239 Sum_probs=58.4
Q ss_pred CCCcEEEccCCCcee-----cCccccCCCCCcEEecCCCCCCCcc-----cccCCCCCCCCEEeeeCCCCCCc----Ccc
Q 044234 37 EHLSNLHLEGTAIRE-----LPVSIELLSGLVLLNLKDCRNLSTL-----PITVSSLKCLRTLKLSGCSKIVK----FPE 102 (276)
Q Consensus 37 ~~L~~L~L~~n~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~l-----p~~~~~l~~L~~L~l~~~~~~~~----lp~ 102 (276)
++|++|++++|.++. ++..+..+++|+.|++++|...... +..+..+++|++|++++|..... ++.
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 355555555555553 3444555666666666666432211 22223456677777776644332 455
Q ss_pred ccCCCCCCCeeeccCccccccC-ccc-ccCCCCCCCccEEeccCCC
Q 044234 103 SVISMEDLSELFLDRTSITEEC-KML-QNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 103 ~l~~l~~L~~L~L~~n~i~~~~-~~L-~~L~~L~~~L~~L~~~~c~ 146 (276)
.+..+++|++|++++|.+.... ..+ ..+..-+++|+.|++++|.
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 5566677777777777664211 011 1112223477788887774
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.87 E-value=6.6e-11 Score=107.80 Aligned_cols=110 Identities=18% Similarity=0.164 Sum_probs=46.9
Q ss_pred CCCCcEEEccCCCcee-----cCccccCCCCCcEEecCCCCCCCcccccC-----CCCCCCCEEeeeCCCCCCc----Cc
Q 044234 36 MEHLSNLHLEGTAIRE-----LPVSIELLSGLVLLNLKDCRNLSTLPITV-----SSLKCLRTLKLSGCSKIVK----FP 101 (276)
Q Consensus 36 l~~L~~L~L~~n~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~lp~~~-----~~l~~L~~L~l~~~~~~~~----lp 101 (276)
+++|++|++++|.++. ++..+..+++|++|++++|......+..+ ...++|++|++++|..... ++
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 4445555555544443 33344444555555555543221111111 1123555555555443322 33
Q ss_pred cccCCCCCCCeeeccCcccccc-Cccc-ccCCCCCCCccEEeccCC
Q 044234 102 ESVISMEDLSELFLDRTSITEE-CKML-QNLPRLPASIHWILLNGC 145 (276)
Q Consensus 102 ~~l~~l~~L~~L~L~~n~i~~~-~~~L-~~L~~L~~~L~~L~~~~c 145 (276)
..+..+++|++|++++|.+.+. ...+ ..+..-.++|++|++++|
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 3444455566666655555421 1111 111111245666666666
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.69 E-value=9.2e-09 Score=96.51 Aligned_cols=86 Identities=14% Similarity=-0.018 Sum_probs=43.1
Q ss_pred CCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCC---CcccccCCCCCCCCEEeeeCCCCCCcCccccCCCCCCC
Q 044234 35 RMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNL---STLPITVSSLKCLRTLKLSGCSKIVKFPESVISMEDLS 111 (276)
Q Consensus 35 ~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l---~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~ 111 (276)
++++|++|++++|.+..++..++.+++|+.|+++++... ...+..+..+++|+.|+++++ ....+|..+..+++|+
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIR 296 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCC
T ss_pred hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCc
Confidence 344444444444444444433444444444444322111 122234445556666666552 3445666666777788
Q ss_pred eeeccCcccc
Q 044234 112 ELFLDRTSIT 121 (276)
Q Consensus 112 ~L~L~~n~i~ 121 (276)
+|++++|.++
T Consensus 297 ~L~Ls~~~l~ 306 (592)
T 3ogk_B 297 KLDLLYALLE 306 (592)
T ss_dssp EEEETTCCCC
T ss_pred EEecCCCcCC
Confidence 8888777654
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=1.6e-07 Score=81.95 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=35.0
Q ss_pred CCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeCCCCCCcCc-cccCCCCCCC-eeeccC
Q 044234 59 LSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSGCSKIVKFP-ESVISMEDLS-ELFLDR 117 (276)
Q Consensus 59 l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~-~L~L~~ 117 (276)
+++|+.+++++|.....-+..|.++++|+.+++.+| +..++ ..|.++.+|+ .+++..
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc
Confidence 566777777766433333345667777777777764 33343 4566777777 777755
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.59 E-value=1.5e-06 Score=78.07 Aligned_cols=100 Identities=17% Similarity=0.247 Sum_probs=47.1
Q ss_pred CCCEEeecCCCCCCcc-ccccCCCCCCcEEEccCCCceecCcc-----------------------ccCCCCCcEEecCC
Q 044234 14 SLSTLNLSGTSKFREF-PEITGRMEHLSNLHLEGTAIRELPVS-----------------------IELLSGLVLLNLKD 69 (276)
Q Consensus 14 ~L~~L~Ls~~~~l~~~-p~~~~~l~~L~~L~L~~n~i~~lp~~-----------------------i~~l~~L~~L~L~~ 69 (276)
+|+.+.+.+ .++.+ +..+.++.+|+.+++.+|.++.++.. |.++++|+.+++..
T Consensus 158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCT
T ss_pred CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCC
Confidence 455555554 12222 23445555555555555555555443 44444455444443
Q ss_pred CCCCCcccc-cCCCCCCCCEEeeeCCCCCCcC-ccccCCCCCCCeeeccCccc
Q 044234 70 CRNLSTLPI-TVSSLKCLRTLKLSGCSKIVKF-PESVISMEDLSELFLDRTSI 120 (276)
Q Consensus 70 ~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~L~~n~i 120 (276)
+ +..++. .|.+ .+|+.+.+.+ + +..+ ...|.++.+|+.+++.+|.+
T Consensus 236 ~--l~~I~~~aF~~-~~L~~i~lp~-~-i~~I~~~aF~~c~~L~~l~l~~~~~ 283 (401)
T 4fdw_A 236 N--VSTIGQEAFRE-SGITTVKLPN-G-VTNIASRAFYYCPELAEVTTYGSTF 283 (401)
T ss_dssp T--CCEECTTTTTT-CCCSEEEEET-T-CCEECTTTTTTCTTCCEEEEESSCC
T ss_pred C--ccCcccccccc-CCccEEEeCC-C-ccEEChhHhhCCCCCCEEEeCCccc
Confidence 2 222222 2222 4555555533 2 2222 34556666777776665543
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.43 E-value=2.2e-08 Score=89.31 Aligned_cols=134 Identities=12% Similarity=0.024 Sum_probs=88.9
Q ss_pred CCCCCEEeecCCCCCCc-cccccCCCCCCcEEEccCCCceecC-----ccc-cCCCCCcEEecCCCCCCC----cccccC
Q 044234 12 LKSLSTLNLSGTSKFRE-FPEITGRMEHLSNLHLEGTAIRELP-----VSI-ELLSGLVLLNLKDCRNLS----TLPITV 80 (276)
Q Consensus 12 l~~L~~L~Ls~~~~l~~-~p~~~~~l~~L~~L~L~~n~i~~lp-----~~i-~~l~~L~~L~L~~~~~l~----~lp~~~ 80 (276)
.++|++|+|++|..... .......+++|++|++++|.++... ..+ ...++|+.|+|++|.... .++..+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 36899999999954332 2223334568899999999887432 222 346789999999986432 244445
Q ss_pred CCCCCCCEEeeeCCCCCC----cCccccCCCCCCCeeeccCccccccC-ccc-ccCCCCCCCccEEeccCCC
Q 044234 81 SSLKCLRTLKLSGCSKIV----KFPESVISMEDLSELFLDRTSITEEC-KML-QNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 81 ~~l~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~L~L~~n~i~~~~-~~L-~~L~~L~~~L~~L~~~~c~ 146 (276)
...++|++|++++|.... .++..+...++|++|++++|.++... ..+ ..+.. .++|++|++++|.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~-~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAARE-HPSLELLHLYFNE 250 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHH-CSSCCEEECTTSS
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHh-CCCCCEEeccCCC
Confidence 678889999999976432 23455677788999999999887321 111 11111 2467899998874
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.40 E-value=1.2e-08 Score=91.06 Aligned_cols=134 Identities=18% Similarity=0.146 Sum_probs=90.6
Q ss_pred CCCCCEEeecCCCCCCc----cccccC-CCCCCcEEEccCCCceec--CccccCCCCCcEEecCCCCCCCcccccC----
Q 044234 12 LKSLSTLNLSGTSKFRE----FPEITG-RMEHLSNLHLEGTAIREL--PVSIELLSGLVLLNLKDCRNLSTLPITV---- 80 (276)
Q Consensus 12 l~~L~~L~Ls~~~~l~~----~p~~~~-~l~~L~~L~L~~n~i~~l--p~~i~~l~~L~~L~L~~~~~l~~lp~~~---- 80 (276)
+++|+.|++++|..... +...+. ..++|++|++++|.++.. ..-...+.+|+.|+|++|.........+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46899999999964432 222333 337999999999998742 2223456789999999996544322222
Q ss_pred -CCCCCCCEEeeeCCCCCC----cCccccCCCCCCCeeeccCcccccc-Cccc-ccCCCCCCCccEEeccCCC
Q 044234 81 -SSLKCLRTLKLSGCSKIV----KFPESVISMEDLSELFLDRTSITEE-CKML-QNLPRLPASIHWILLNGCV 146 (276)
Q Consensus 81 -~~l~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~L~L~~n~i~~~-~~~L-~~L~~L~~~L~~L~~~~c~ 146 (276)
...++|++|++++|.... .++..+...++|++|++++|.+... ...+ ..+... .+|+.|++++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~-~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN-RQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC-SCCCEEECCSSC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC-CCcCeEECCCCC
Confidence 346789999999986533 3455567889999999999998732 1111 112222 478999999984
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.40 E-value=3.1e-08 Score=92.85 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=58.6
Q ss_pred CCCCCCEEeecCCCCCCccccccC-CCCCCcEEEccCC-Ccee--cCccccCCCCCcEEecCCCCCCCc----ccccCCC
Q 044234 11 GLKSLSTLNLSGTSKFREFPEITG-RMEHLSNLHLEGT-AIRE--LPVSIELLSGLVLLNLKDCRNLST----LPITVSS 82 (276)
Q Consensus 11 ~l~~L~~L~Ls~~~~l~~~p~~~~-~l~~L~~L~L~~n-~i~~--lp~~i~~l~~L~~L~L~~~~~l~~----lp~~~~~ 82 (276)
.+++|++|++++|......+..+. .+++|++|++++| .++. ++..+.++++|++|++++|..... ++.....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 466777777777754333333332 4667777777776 4443 334345677777777777653222 2222335
Q ss_pred CCCCCEEeeeCCC-CC--CcCccccCCCCCCCeeeccCc
Q 044234 83 LKCLRTLKLSGCS-KI--VKFPESVISMEDLSELFLDRT 118 (276)
Q Consensus 83 l~~L~~L~l~~~~-~~--~~lp~~l~~l~~L~~L~L~~n 118 (276)
+++|+.|++++|. .. ..++..+..+++|+.|++++|
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 5666777766654 01 111112233456666666554
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.39 E-value=1.2e-07 Score=88.76 Aligned_cols=60 Identities=13% Similarity=-0.008 Sum_probs=24.6
Q ss_pred cCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeCCCCC---CcCccccCCCCCCCeeeccC
Q 044234 57 ELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSGCSKI---VKFPESVISMEDLSELFLDR 117 (276)
Q Consensus 57 ~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~---~~lp~~l~~l~~L~~L~L~~ 117 (276)
.++++|+.|++++|. ...+|..+..+++|++|+++.+... ...+..+..+++|+.|++++
T Consensus 217 ~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 279 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279 (592)
T ss_dssp HHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETT
T ss_pred hhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccc
Confidence 344444444444442 2223334444444444444432211 12223344445555555543
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.37 E-value=1.1e-07 Score=76.33 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=41.8
Q ss_pred cCCCCCCcEEEccCC-Cce-----ecCccccCCCCCcEEecCCCCCCCc----ccccCCCCCCCCEEeeeCCCCCCc---
Q 044234 33 TGRMEHLSNLHLEGT-AIR-----ELPVSIELLSGLVLLNLKDCRNLST----LPITVSSLKCLRTLKLSGCSKIVK--- 99 (276)
Q Consensus 33 ~~~l~~L~~L~L~~n-~i~-----~lp~~i~~l~~L~~L~L~~~~~l~~----lp~~~~~l~~L~~L~l~~~~~~~~--- 99 (276)
+...+.|++|++++| .+. .+...+...++|++|+|++|..... +...+...++|++|++++|.+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344455555555555 444 2233344445555555555533221 122223334555666655543321
Q ss_pred -CccccCCCCCCCeeec--cCcccc
Q 044234 100 -FPESVISMEDLSELFL--DRTSIT 121 (276)
Q Consensus 100 -lp~~l~~l~~L~~L~L--~~n~i~ 121 (276)
+...+...++|++|++ ++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHhCCCceEEEecCCCCCCC
Confidence 2334444555666666 555554
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=1.5e-06 Score=75.66 Aligned_cols=107 Identities=21% Similarity=0.224 Sum_probs=74.5
Q ss_pred CCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcc-cccCCCCCCCC-E
Q 044234 12 LKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTL-PITVSSLKCLR-T 88 (276)
Q Consensus 12 l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~L~-~ 88 (276)
..++..+.+.+.-....+......+++|+.+++++|.++.+|.. |.++.+|+.+++.+| +..+ +..|.++.+|+ .
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEE
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEE
Confidence 55677777776522222222222367888888888888888775 888888898888886 4444 45677888888 8
Q ss_pred EeeeCCCCCCcCccccCCCCCCCeeeccCcccc
Q 044234 89 LKLSGCSKIVKFPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 89 L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
+++.+ +....-+..|.++++|+.+++++|.++
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 88877 333333467888888888888777665
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.29 E-value=3e-08 Score=92.96 Aligned_cols=136 Identities=18% Similarity=0.261 Sum_probs=91.2
Q ss_pred cCCCCCCCEEeecCCCCCCccc---------------cccCCCCCCcEEEccCCCceec-Ccccc-CCCCCcEEecCCCC
Q 044234 9 ISGLKSLSTLNLSGTSKFREFP---------------EITGRMEHLSNLHLEGTAIREL-PVSIE-LLSGLVLLNLKDCR 71 (276)
Q Consensus 9 l~~l~~L~~L~Ls~~~~l~~~p---------------~~~~~l~~L~~L~L~~n~i~~l-p~~i~-~l~~L~~L~L~~~~ 71 (276)
+..+++|+.|++++|.....+. .....+++|++|++++|.++.. +..+. .+++|+.|++++|.
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 3457899999999986443321 1234578999999999987743 33444 68999999999995
Q ss_pred CCCc--ccccCCCCCCCCEEeeeCCCCCCc----CccccCCCCCCCeeeccCcc--ccccCcccccCCCCCCCccEEecc
Q 044234 72 NLST--LPITVSSLKCLRTLKLSGCSKIVK----FPESVISMEDLSELFLDRTS--ITEECKMLQNLPRLPASIHWILLN 143 (276)
Q Consensus 72 ~l~~--lp~~~~~l~~L~~L~l~~~~~~~~----lp~~l~~l~~L~~L~L~~n~--i~~~~~~L~~L~~L~~~L~~L~~~ 143 (276)
..+. ++..+.++++|++|++++|..... ++.....+++|+.|++++|. +.. ..+..+..-.++|+.|++.
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF--SALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCH--HHHHHHHHHCTTCCEEECC
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCH--HHHHHHHHhCCCCcEEecC
Confidence 5444 444455789999999999874332 33333477899999998876 220 1111111113577888888
Q ss_pred CCC
Q 044234 144 GCV 146 (276)
Q Consensus 144 ~c~ 146 (276)
+|.
T Consensus 220 ~~~ 222 (594)
T 2p1m_B 220 RAV 222 (594)
T ss_dssp TTS
T ss_pred CCC
Confidence 873
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.15 E-value=2.2e-05 Score=70.49 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=74.4
Q ss_pred CCccCc-ccCCCCCCCEEeecCCCCCCcc-----------------------ccccCCCCCCcEEEccCCCceecCcc-c
Q 044234 2 LKSLPR-NISGLKSLSTLNLSGTSKFREF-----------------------PEITGRMEHLSNLHLEGTAIRELPVS-I 56 (276)
Q Consensus 2 L~~LP~-~l~~l~~L~~L~Ls~~~~l~~~-----------------------p~~~~~l~~L~~L~L~~n~i~~lp~~-i 56 (276)
++.+++ .|.++++|+.+++.+| .+..+ ...+.++++|+.+++..+ ++.++.. |
T Consensus 168 l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF 245 (401)
T 4fdw_A 168 LEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAF 245 (401)
T ss_dssp CCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTT
T ss_pred ccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-ccCcccccc
Confidence 344442 4667788888888764 22222 233556777888888764 6666554 6
Q ss_pred cCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeCCCCC-----CcCccccCCCCCCCeeeccC
Q 044234 57 ELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSGCSKI-----VKFPESVISMEDLSELFLDR 117 (276)
Q Consensus 57 ~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~-----~~lp~~l~~l~~L~~L~L~~ 117 (276)
.+ .+|+.+.+.++ ....-...|.++++|+.+++.++... ..-+..|.++.+|+.+.+..
T Consensus 246 ~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 246 RE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp TT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred cc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 66 78999999653 33333567888999999999885432 13345678889999999864
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.11 E-value=2e-06 Score=76.32 Aligned_cols=173 Identities=15% Similarity=0.070 Sum_probs=96.5
Q ss_pred CcccCCCCCCCEEeecCCCC---------CCccccccCCCCCCcEEEccCCCceecCccccCCCCCcEEecCCCCCCCcc
Q 044234 6 PRNISGLKSLSTLNLSGTSK---------FREFPEITGRMEHLSNLHLEGTAIRELPVSIELLSGLVLLNLKDCRNLSTL 76 (276)
Q Consensus 6 P~~l~~l~~L~~L~Ls~~~~---------l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~i~~l~~L~~L~L~~~~~l~~l 76 (276)
.+++..+++|+.|.+.+... ...+...+..+++|+.|++.++.-..++. +. +++|+.|++..|......
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHH
Confidence 34455678899998865421 11244555678899999998873224444 43 788999999877543322
Q ss_pred cccC--CCCCCCCEEeeeCC--CC-----CCcCcccc--CCCCCCCeeeccCccccccC-cccccCCCCCCCccEEeccC
Q 044234 77 PITV--SSLKCLRTLKLSGC--SK-----IVKFPESV--ISMEDLSELFLDRTSITEEC-KMLQNLPRLPASIHWILLNG 144 (276)
Q Consensus 77 p~~~--~~l~~L~~L~l~~~--~~-----~~~lp~~l--~~l~~L~~L~L~~n~i~~~~-~~L~~L~~L~~~L~~L~~~~ 144 (276)
...+ ..+++|++|+|+.+ .. ...+...+ ..+++|+.|++.+|.+.... ..+...+.+ +.|+.|+++.
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~-~~L~~LdLs~ 288 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL-PQLETMDISA 288 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSG-GGCSEEECCS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccC-CCCCEEECCC
Confidence 2222 26889999998642 11 11122222 35788999999888876322 222222223 5789999976
Q ss_pred CCCCccccchhhh-cccCCCCc-ceeecCCCcchhhHHHHH
Q 044234 145 CVSLEILSDVLKL-NEHRLPSL-SLYCVDCSKLTGNYALAL 183 (276)
Q Consensus 145 c~~L~~~~~~~~~-~~~~~~~l-~l~~~~c~~L~~~~~~~~ 183 (276)
+ .+......... ....+..+ .|++.+| .+++...+.+
T Consensus 289 n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l 327 (362)
T 2ra8_A 289 G-VLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKEL 327 (362)
T ss_dssp S-CCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHH
T ss_pred C-CCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHH
Confidence 4 45442111000 10112222 4556666 4665555544
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.09 E-value=2e-06 Score=68.23 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=46.2
Q ss_pred CCCcEEEccCCCceec-CccccCCCCCcEEecCCCCCCCcc-cccCCCC----CCCCEEeeeCCCCCCc-CccccCCCCC
Q 044234 37 EHLSNLHLEGTAIREL-PVSIELLSGLVLLNLKDCRNLSTL-PITVSSL----KCLRTLKLSGCSKIVK-FPESVISMED 109 (276)
Q Consensus 37 ~~L~~L~L~~n~i~~l-p~~i~~l~~L~~L~L~~~~~l~~l-p~~~~~l----~~L~~L~l~~~~~~~~-lp~~l~~l~~ 109 (276)
..|+.||+++|.|+.. -..+..+++|+.|+|++|..+++- -..+..+ ++|++|++++|..++. --..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3566777777666532 233566777777777777544431 1122232 3577777777764442 1133556677
Q ss_pred CCeeeccCc
Q 044234 110 LSELFLDRT 118 (276)
Q Consensus 110 L~~L~L~~n 118 (276)
|+.|+++++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 777777443
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.08 E-value=2.1e-06 Score=72.85 Aligned_cols=80 Identities=23% Similarity=0.193 Sum_probs=58.5
Q ss_pred CCCCCCcEEEccCCCceecC---ccccCCCCCcEEecCCCCCCCcccccCCCCC--CCCEEeeeCCCCCCcCcc------
Q 044234 34 GRMEHLSNLHLEGTAIRELP---VSIELLSGLVLLNLKDCRNLSTLPITVSSLK--CLRTLKLSGCSKIVKFPE------ 102 (276)
Q Consensus 34 ~~l~~L~~L~L~~n~i~~lp---~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~--~L~~L~l~~~~~~~~lp~------ 102 (276)
.++++|+.|+|++|.|+.++ ..++.+++|+.|+|++|...+. ..+..+. +|++|++++|...+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 46788999999999888654 4567889999999999865543 2233333 899999999887765552
Q ss_pred -ccCCCCCCCeeec
Q 044234 103 -SVISMEDLSELFL 115 (276)
Q Consensus 103 -~l~~l~~L~~L~L 115 (276)
.+..+++|+.||-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 3567888888874
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=4.4e-06 Score=66.20 Aligned_cols=99 Identities=13% Similarity=0.175 Sum_probs=62.5
Q ss_pred ecCccccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeCCCCCCcC-ccccCCC----CCCCeeeccCcc-ccccC
Q 044234 51 ELPVSIELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSGCSKIVKF-PESVISM----EDLSELFLDRTS-ITEEC 124 (276)
Q Consensus 51 ~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~l-p~~l~~l----~~L~~L~L~~n~-i~~~~ 124 (276)
.+|.....-.+|+.||+++|.....--..+.++++|++|++++|..++.- -..+..+ ++|++|+++++. +++.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~- 130 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK- 130 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-
Confidence 34543323346888999988754443445678888999999998755432 1234443 368899997763 5521
Q ss_pred cccccCCCCCCCccEEeccCCCCCcccc
Q 044234 125 KMLQNLPRLPASIHWILLNGCVSLEILS 152 (276)
Q Consensus 125 ~~L~~L~~L~~~L~~L~~~~c~~L~~~~ 152 (276)
.+..+..+ ++|+.|++++|+.++...
T Consensus 131 -Gl~~L~~~-~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 131 -GIIALHHF-RNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp -HHHHGGGC-TTCCEEEEESCTTCCCHH
T ss_pred -HHHHHhcC-CCCCEEECCCCCCCCchH
Confidence 12233344 677889999998877654
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.96 E-value=8e-07 Score=71.16 Aligned_cols=113 Identities=14% Similarity=0.053 Sum_probs=76.3
Q ss_pred cCCCCCCCEEeecCC-CCCCc----cccccCCCCCCcEEEccCCCcee-----cCccccCCCCCcEEecCCCCCCCc---
Q 044234 9 ISGLKSLSTLNLSGT-SKFRE----FPEITGRMEHLSNLHLEGTAIRE-----LPVSIELLSGLVLLNLKDCRNLST--- 75 (276)
Q Consensus 9 l~~l~~L~~L~Ls~~-~~l~~----~p~~~~~l~~L~~L~L~~n~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~--- 75 (276)
+...++|++|+|++| ..... +.+.+...++|++|++++|.|.. +...+...+.|++|+|++|.....
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 455778888888887 43322 44556667888888988888773 344456667888888888854432
Q ss_pred -ccccCCCCCCCCEEee--eCCCCCCc----CccccCCCCCCCeeeccCcccc
Q 044234 76 -LPITVSSLKCLRTLKL--SGCSKIVK----FPESVISMEDLSELFLDRTSIT 121 (276)
Q Consensus 76 -lp~~~~~l~~L~~L~l--~~~~~~~~----lp~~l~~l~~L~~L~L~~n~i~ 121 (276)
+...+...++|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455666778888888 66654332 3344555577888888777764
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.96 E-value=2.2e-06 Score=76.04 Aligned_cols=109 Identities=15% Similarity=0.149 Sum_probs=46.1
Q ss_pred CCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceec-Cccc--cCCCCCcEEecCCC--CC-----CCccccc
Q 044234 10 SGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIREL-PVSI--ELLSGLVLLNLKDC--RN-----LSTLPIT 79 (276)
Q Consensus 10 ~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~i--~~l~~L~~L~L~~~--~~-----l~~lp~~ 79 (276)
..+++|+.|++++|... .++. + .+++|++|++..+.+..- ...+ ..+++|+.|+|+.+ .. ...+...
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 34455666666555211 2222 2 245566666655544311 1112 14555666655321 00 0011111
Q ss_pred C--CCCCCCCEEeeeCCCCCCcCcccc---CCCCCCCeeeccCcccc
Q 044234 80 V--SSLKCLRTLKLSGCSKIVKFPESV---ISMEDLSELFLDRTSIT 121 (276)
Q Consensus 80 ~--~~l~~L~~L~l~~~~~~~~lp~~l---~~l~~L~~L~L~~n~i~ 121 (276)
+ ..+++|++|++.+|......+..+ ..+++|++|+++.|.+.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 1 234566666665554332211111 23455666666555554
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.91 E-value=5.6e-06 Score=70.18 Aligned_cols=81 Identities=22% Similarity=0.258 Sum_probs=58.6
Q ss_pred EEccCCCceecCcc----ccCCCCCcEEecCCCCCCC--cccccCCCCCCCCEEeeeCCCCCCcCccccCCCC--CCCee
Q 044234 42 LHLEGTAIRELPVS----IELLSGLVLLNLKDCRNLS--TLPITVSSLKCLRTLKLSGCSKIVKFPESVISME--DLSEL 113 (276)
Q Consensus 42 L~L~~n~i~~lp~~----i~~l~~L~~L~L~~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~--~L~~L 113 (276)
++++.|....++.. ..++++|+.|+|++|...+ .+|..+..+++|+.|+|++|.+.+ + ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceE
Confidence 56677755544432 2568899999999997665 455666789999999999976544 3 2344444 89999
Q ss_pred eccCccccccC
Q 044234 114 FLDRTSITEEC 124 (276)
Q Consensus 114 ~L~~n~i~~~~ 124 (276)
++++|++.+..
T Consensus 226 ~L~~Npl~~~~ 236 (267)
T 3rw6_A 226 WLDGNSLCDTF 236 (267)
T ss_dssp ECTTSTTGGGC
T ss_pred EccCCcCcccc
Confidence 99999997533
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.52 E-value=0.0016 Score=57.77 Aligned_cols=88 Identities=24% Similarity=0.317 Sum_probs=48.8
Q ss_pred cCCCCCCCCEEeeeCCCCCCcCc-cccCCCCCCCeeeccCcccc-------ccCcccccCCCCCCCccEEe---ccCCCC
Q 044234 79 TVSSLKCLRTLKLSGCSKIVKFP-ESVISMEDLSELFLDRTSIT-------EECKMLQNLPRLPASIHWIL---LNGCVS 147 (276)
Q Consensus 79 ~~~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~L~~n~i~-------~~~~~L~~L~~L~~~L~~L~---~~~c~~ 147 (276)
.+..+.+|+.+.+..+ +..++ ..+.++.+|+.+++..+ ++ ..|.+|+.+ .+|.+++.+. ..+|.+
T Consensus 292 ~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i-~lp~~l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNI-NFPLSLRKIGANAFQGCIN 367 (394)
T ss_dssp TTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEE-CCCTTCCEECTTTBTTCTT
T ss_pred cccccccccccccccc--cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEE-EECccccEehHHHhhCCCC
Confidence 3556677777777552 33333 34667777777777543 22 345555554 3566666663 457777
Q ss_pred CccccchhhhcccCCCCcceeecCCCcc
Q 044234 148 LEILSDVLKLNEHRLPSLSLYCVDCSKL 175 (276)
Q Consensus 148 L~~~~~~~~~~~~~~~~l~l~~~~c~~L 175 (276)
|+++.-+. ....+...|.+|.+|
T Consensus 368 L~~i~lp~-----~~~~~~~~F~~c~~L 390 (394)
T 4fs7_A 368 LKKVELPK-----RLEQYRYDFEDTTKF 390 (394)
T ss_dssp CCEEEEEG-----GGGGGGGGBCTTCEE
T ss_pred CCEEEECC-----CCEEhhheecCCCCC
Confidence 77665421 122222356777776
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.39 E-value=0.0014 Score=58.20 Aligned_cols=60 Identities=10% Similarity=0.061 Sum_probs=33.9
Q ss_pred ccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCC
Q 044234 8 NISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKD 69 (276)
Q Consensus 8 ~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~ 69 (276)
.|.++++|+.+.+.++ ....-...+.++.+|+.+.+..+ ++.++.. +.++..|+.+.+..
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 3556777777777654 22222345566777777777654 4444332 55555565555443
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.31 E-value=0.0022 Score=56.90 Aligned_cols=107 Identities=11% Similarity=0.179 Sum_probs=75.1
Q ss_pred ccCCCCCCCEEeecCCCCCCccccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcc-cccCCCCCC
Q 044234 8 NISGLKSLSTLNLSGTSKFREFPEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTL-PITVSSLKC 85 (276)
Q Consensus 8 ~l~~l~~L~~L~Ls~~~~l~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l-p~~~~~l~~ 85 (276)
.|.++..|+.+.+... ....-...+.++..|+.+.+. +.++.++.. |.++.+|+.+++..+ +..+ ...|.++.+
T Consensus 260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTT
T ss_pred eeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCC
Confidence 3566777888887664 233333456678888888885 457777665 888899999988764 3333 456778899
Q ss_pred CCEEeeeCCCCCCcCc-cccCCCCCCCeeeccCccc
Q 044234 86 LRTLKLSGCSKIVKFP-ESVISMEDLSELFLDRTSI 120 (276)
Q Consensus 86 L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~L~~n~i 120 (276)
|+.+.+..+ +..+. ..|.++.+|+.+++.++..
T Consensus 336 L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 336 LERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred CCEEEECcc--cCEEhHhHhhCCCCCCEEEECCcee
Confidence 999998653 44443 5678888999998877643
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.29 E-value=0.0055 Score=53.86 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=41.7
Q ss_pred cCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCccc-ccCCCCCCCCEEeeeCCCCCCcC-ccccCCCCC
Q 044234 33 TGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLP-ITVSSLKCLRTLKLSGCSKIVKF-PESVISMED 109 (276)
Q Consensus 33 ~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~l-p~~l~~l~~ 109 (276)
+.++..|+.+.+..+ ++.+... +.++.+|+.+.+..+ +..++ ..+.++.+|+.+.+.++. +..+ ...|.++.+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVK 311 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTT
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccc-cceehhhhhcCCCC
Confidence 345556666666543 4444332 555666666666542 22332 345566666666665532 2223 234556666
Q ss_pred CCeeecc
Q 044234 110 LSELFLD 116 (276)
Q Consensus 110 L~~L~L~ 116 (276)
|+.+.+.
T Consensus 312 L~~i~lp 318 (379)
T 4h09_A 312 LSSVTLP 318 (379)
T ss_dssp CCEEECC
T ss_pred CCEEEcC
Confidence 6666663
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.23 E-value=0.0018 Score=57.08 Aligned_cols=102 Identities=13% Similarity=0.163 Sum_probs=70.4
Q ss_pred cCCCCCCCEEeecCCCCCCcc-ccccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcccccCCCCCCC
Q 044234 9 ISGLKSLSTLNLSGTSKFREF-PEITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTLPITVSSLKCL 86 (276)
Q Consensus 9 l~~l~~L~~L~Ls~~~~l~~~-p~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L 86 (276)
+.++..|+.+.+..+ ++.+ ...+.++.+|+.+.+..+ ++.++.. |.++.+|+.+.+.++.....-...|.++.+|
T Consensus 236 f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 236 FYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred ccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 455677777777664 3333 345667889999998654 6777654 8899999999998764333345678899999
Q ss_pred CEEeeeCCCCCCcCc-cccCCCCCCCeeec
Q 044234 87 RTLKLSGCSKIVKFP-ESVISMEDLSELFL 115 (276)
Q Consensus 87 ~~L~l~~~~~~~~lp-~~l~~l~~L~~L~L 115 (276)
+.+.+..+ +..+. ..|.++.+|+.+.+
T Consensus 313 ~~i~lp~~--l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 313 SSVTLPTA--LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CEEECCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred CEEEcCcc--ccEEHHHHhhCCCCCCEEEE
Confidence 99999652 44443 34566666666655
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.54 E-value=0.0016 Score=52.36 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=38.5
Q ss_pred CCCCCcEEEccCC-Cce-----ecCccccCCCCCcEEecCCCCCCCc----ccccCCCCCCCCEEeeeCCCCCC----cC
Q 044234 35 RMEHLSNLHLEGT-AIR-----ELPVSIELLSGLVLLNLKDCRNLST----LPITVSSLKCLRTLKLSGCSKIV----KF 100 (276)
Q Consensus 35 ~l~~L~~L~L~~n-~i~-----~lp~~i~~l~~L~~L~L~~~~~l~~----lp~~~~~l~~L~~L~l~~~~~~~----~l 100 (276)
+-+.|++|+|+++ .|. .+-..+..-+.|+.|+|++|..... +.+.+..-+.|++|+|+.|.+.. .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3445555666553 443 1223344445566666666543221 11122233456666666654332 12
Q ss_pred ccccCCCCCCCeeeccC
Q 044234 101 PESVISMEDLSELFLDR 117 (276)
Q Consensus 101 p~~l~~l~~L~~L~L~~ 117 (276)
-+.+..-..|++|+|++
T Consensus 119 a~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHTTTTCCCSEEECCC
T ss_pred HHHHhhCCceeEEECCC
Confidence 23344445566666654
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.42 E-value=0.006 Score=45.48 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=18.1
Q ss_pred CCcEEEccCCCceecCcc-ccCCCCCcEEecCCC
Q 044234 38 HLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDC 70 (276)
Q Consensus 38 ~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~ 70 (276)
+|++|+|++|.|+.+|.. |..+++|+.|+|++|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 455566666665555443 455555555555554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.32 E-value=0.0083 Score=44.72 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=31.8
Q ss_pred cccccCCCCCCCCEEeeeCCCCCCcCccccCCCCCCCeeeccCccccccCc
Q 044234 75 TLPITVSSLKCLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTSITEECK 125 (276)
Q Consensus 75 ~lp~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~~~~ 125 (276)
.+|..+ ..+|++|+|++|.+...-+..+..+++|+.|+|++|++..+|.
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 555432 2356777777754333323446777888889999998887775
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.25 E-value=0.0098 Score=52.68 Aligned_cols=104 Identities=13% Similarity=0.194 Sum_probs=70.5
Q ss_pred ccCCCCCCCEEeecCCCCCCccc-cccCCCCCCcEEEccCCCceecCcc-ccCCCCCcEEecCCCCCCCcc-cccCCCCC
Q 044234 8 NISGLKSLSTLNLSGTSKFREFP-EITGRMEHLSNLHLEGTAIRELPVS-IELLSGLVLLNLKDCRNLSTL-PITVSSLK 84 (276)
Q Consensus 8 ~l~~l~~L~~L~Ls~~~~l~~~p-~~~~~l~~L~~L~L~~n~i~~lp~~-i~~l~~L~~L~L~~~~~l~~l-p~~~~~l~ 84 (276)
.|.++.+|+.+.+... +..++ ..+.++.+|+.+.+..+ ++.+... |.++.+|+.+.+..+ +..+ ...|.+++
T Consensus 283 aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 283 AFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCT 357 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCT
T ss_pred ccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCC
Confidence 3667899999999753 45554 56778999999999764 7778554 999999999999764 4444 45788999
Q ss_pred CCCEEeeeCCCCCCcCccccCCCCCCCeeeccCcc
Q 044234 85 CLRTLKLSGCSKIVKFPESVISMEDLSELFLDRTS 119 (276)
Q Consensus 85 ~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~ 119 (276)
+|+.+++.++... -..+....+|+.+.+..+.
T Consensus 358 ~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 358 ALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred CCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 9999999875321 1345566677777765543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.23 E-value=0.029 Score=44.91 Aligned_cols=89 Identities=17% Similarity=0.111 Sum_probs=52.7
Q ss_pred ccCCCCCcEEecCCCCCCCc-----ccccCCCCCCCCEEeeeCCCCCC----cCccccCCCCCCCeeeccCcccccc-Cc
Q 044234 56 IELLSGLVLLNLKDCRNLST-----LPITVSSLKCLRTLKLSGCSKIV----KFPESVISMEDLSELFLDRTSITEE-CK 125 (276)
Q Consensus 56 i~~l~~L~~L~L~~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~L~L~~n~i~~~-~~ 125 (276)
+.+-+.|+.|+|++++.++. +-+.+..-+.|+.|+|++|.+.. .+.+.+..-+.|+.|+|+.|.|... ..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 34556788888887533332 33345556788888888875432 2334454556788888888888621 11
Q ss_pred cc-ccCCCCCCCccEEeccCC
Q 044234 126 ML-QNLPRLPASIHWILLNGC 145 (276)
Q Consensus 126 ~L-~~L~~L~~~L~~L~~~~c 145 (276)
.+ +.| .-..+|+.|+++++
T Consensus 117 ala~aL-~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRST-LVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHT-TTTCCCSEEECCCC
T ss_pred HHHHHH-hhCCceeEEECCCC
Confidence 11 112 12356788888765
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=50.62 E-value=22 Score=24.43 Aligned_cols=37 Identities=14% Similarity=-0.017 Sum_probs=16.4
Q ss_pred ccCCCCCcEEecCCCCCCCcccccCCCCCCCCEEeeeC
Q 044234 56 IELLSGLVLLNLKDCRNLSTLPITVSSLKCLRTLKLSG 93 (276)
Q Consensus 56 i~~l~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~ 93 (276)
|.++.+|+.+.+-.+ ....-...|.++.+|+.+.+.+
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 555555555555432 1112223344455555554433
Done!