BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044236
(747 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 148/301 (49%), Gaps = 26/301 (8%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLS 491
L +L+EATNNFD +G G GK+YKG L +G VA++ T I+ + ++ LS
Sbjct: 31 LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLS 90
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL-SENCPENVLKWSDRL 550
+HPHLVSL+G C E N++ L+Y+Y+ NG+ + HL + P + W RL
Sbjct: 91 FCRHPHLVSLIGFCDER--------NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRL 142
Query: 551 AILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKG 610
I IG A+ +H+LH+ I + + NILLDE+ + K++D+GIS E ++
Sbjct: 143 EICIGAARGLHYLHTRAI---IHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLX- 198
Query: 611 EGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP---IVTGKGEA 667
K G++ E + R + DVY+FG +L E L + + E
Sbjct: 199 XVVKGTLGYI-----DPEYFI----KGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREM 249
Query: 668 FLLNEMASFGSQDGR-RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN 726
L E A +G+ +IVDP + ESL KC+ RPS DVLW
Sbjct: 250 VNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWK 309
Query: 727 L 727
L
Sbjct: 310 L 310
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/305 (32%), Positives = 147/305 (48%), Gaps = 34/305 (11%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLS 491
L +L+EATNNFD +G G GK+YKG L +G VA++ T I+ + ++ LS
Sbjct: 31 LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLS 90
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL-SENCPENVLKWSDRL 550
+HPHLVSL+G C E N++ L+Y+Y+ NG+ + HL + P + W RL
Sbjct: 91 FCRHPHLVSLIGFCDER--------NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRL 142
Query: 551 AILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI----IMEEHEKL 606
I IG A+ +H+LH+ I + + NILLDE+ + K++D+GIS + + H
Sbjct: 143 EICIGAARGLHYLHTRAI---IHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXX 199
Query: 607 EAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP---IVTG 663
KG + R + ++ DVY+FG +L E L + +
Sbjct: 200 VVKGTLGYIDPEYFIKGRLTEKS--------------DVYSFGVVLFEVLCARSAIVQSL 245
Query: 664 KGEAFLLNEMASFGSQDGR-RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFED 722
E L E A +G+ +IVDP + ESL KC+ RPS D
Sbjct: 246 PREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGD 305
Query: 723 VLWNL 727
VLW L
Sbjct: 306 VLWKL 310
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 140/314 (44%), Gaps = 45/314 (14%)
Query: 427 YRTFYLEELKEATNNFDSLSF------MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSI 480
+ +F ELK TNNFD MGEG G +YKG + N T VA++ L + +
Sbjct: 6 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITT 64
Query: 481 QNLKVRLD----FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS 536
+ LK + D ++K QH +LV LLG S+ + + LVY Y+PNGS LS
Sbjct: 65 EELKQQFDQEIKVMAKCQHENLVELLGFS--------SDGDDLCLVYVYMPNGSLLDRLS 116
Query: 537 ENCPENV--LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY 594
C + L W R I G A ++FLH + + + NILLDE AK+SD+
Sbjct: 117 --CLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDF 171
Query: 595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKL--EDDVYNFGFIL 652
G++ E+ + + R + + R ++ + D+Y+FG +L
Sbjct: 172 GLARASEKFAQX-------------VMXXRIVGTTAYMAPEALRGEITPKSDIYSFGVVL 218
Query: 653 LESLVG-PIVTGKGEAFLL--NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKC 709
LE + G P V E LL + + +D + S+ + S+ ++C
Sbjct: 219 LEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDK-KMNDADSTSVEAMYSVASQC 277
Query: 710 ICPEPSSRPSFEDV 723
+ + + RP + V
Sbjct: 278 LHEKKNKRPDIKKV 291
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 140/314 (44%), Gaps = 45/314 (14%)
Query: 427 YRTFYLEELKEATNNFDSLSF------MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSI 480
+ +F ELK TNNFD MGEG G +YKG + N T VA++ L + +
Sbjct: 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITT 70
Query: 481 QNLKVRLD----FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS 536
+ LK + D ++K QH +LV LLG S+ + + LVY Y+PNGS LS
Sbjct: 71 EELKQQFDQEIKVMAKCQHENLVELLGFS--------SDGDDLCLVYVYMPNGSLLDRLS 122
Query: 537 ENCPENV--LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY 594
C + L W R I G A ++FLH + + + NILLDE AK+SD+
Sbjct: 123 --CLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDF 177
Query: 595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKL--EDDVYNFGFIL 652
G++ E+ + + R + + R ++ + D+Y+FG +L
Sbjct: 178 GLARASEKFAQT-------------VMXSRIVGTTAYMAPEALRGEITPKSDIYSFGVVL 224
Query: 653 LESLVG-PIVTGKGEAFLL--NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKC 709
LE + G P V E LL + + +D + S+ + S+ ++C
Sbjct: 225 LEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDK-KMNDADSTSVEAMYSVASQC 283
Query: 710 ICPEPSSRPSFEDV 723
+ + + RP + V
Sbjct: 284 LHEKKNKRPDIKKV 297
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 140/314 (44%), Gaps = 45/314 (14%)
Query: 427 YRTFYLEELKEATNNFDSLSF------MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSI 480
+ +F ELK TNNFD MGEG G +YKG + N T VA++ L + +
Sbjct: 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITT 70
Query: 481 QNLKVRLD----FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS 536
+ LK + D ++K QH +LV LLG S+ + + LVY Y+PNGS LS
Sbjct: 71 EELKQQFDQEIKVMAKCQHENLVELLGFS--------SDGDDLCLVYVYMPNGSLLDRLS 122
Query: 537 ENCPENV--LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY 594
C + L W R I G A ++FLH + + + NILLDE AK+SD+
Sbjct: 123 --CLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDF 177
Query: 595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKL--EDDVYNFGFIL 652
G++ E+ + + R + + R ++ + D+Y+FG +L
Sbjct: 178 GLARASEKFAQT-------------VMXXRIVGTTAYMAPEALRGEITPKSDIYSFGVVL 224
Query: 653 LESLVG-PIVTGKGEAFLL--NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKC 709
LE + G P V E LL + + +D + S+ + S+ ++C
Sbjct: 225 LEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDK-KMNDADSTSVEAMYSVASQC 283
Query: 710 ICPEPSSRPSFEDV 723
+ + + RP + V
Sbjct: 284 LHEKKNKRPDIKKV 297
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 134/309 (43%), Gaps = 35/309 (11%)
Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQ-NLKVR 486
+ F L EL+ A++NF + + +G G GK+YKGRL +GT VA++ L + + +
Sbjct: 26 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTE 85
Query: 487 LDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV--L 544
++ +S H +L+ L G C+ + LVY Y+ NGS + L E PE+ L
Sbjct: 86 VEMISMAVHRNLLRLRGFCM--------TPTERLLVYPYMANGSVASCLRER-PESQPPL 136
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---E 601
W R I +G A+ + +LH + NILLDE A + D+G++ +M +
Sbjct: 137 DWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKD 196
Query: 602 EHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG--- 658
H +G +L ++S + DV+ +G +LLE + G
Sbjct: 197 XHVXXAVRGTIGHIAPEYLSTGKSSEKT--------------DVFGYGVMLLELITGQRA 242
Query: 659 ---PIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPS 715
+ + LL+ + + +VD + E + ++ + C P
Sbjct: 243 FDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPM 302
Query: 716 SRPSFEDVL 724
RP +V+
Sbjct: 303 ERPKMSEVV 311
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 133/309 (43%), Gaps = 35/309 (11%)
Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQ-NLKVR 486
+ F L EL+ A++NF + + +G G GK+YKGRL +G VA++ L + + +
Sbjct: 18 KRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQTE 77
Query: 487 LDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV--L 544
++ +S H +L+ L G C+ + LVY Y+ NGS + L E PE+ L
Sbjct: 78 VEMISMAVHRNLLRLRGFCM--------TPTERLLVYPYMANGSVASCLRER-PESQPPL 128
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---E 601
W R I +G A+ + +LH + NILLDE A + D+G++ +M +
Sbjct: 129 DWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKD 188
Query: 602 EHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG--- 658
H +G +L ++S + DV+ +G +LLE + G
Sbjct: 189 XHVXXAVRGXIGHIAPEYLSTGKSSEKT--------------DVFGYGVMLLELITGQRA 234
Query: 659 ---PIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPS 715
+ + LL+ + + +VD + E + ++ + C P
Sbjct: 235 FDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPM 294
Query: 716 SRPSFEDVL 724
RP +V+
Sbjct: 295 ERPKMSEVV 303
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 116/259 (44%), Gaps = 42/259 (16%)
Query: 427 YRTFYLEELKEATNNFDSLSF------MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSI 480
+ +F ELK TNNFD GEG G +YKG + N T VA++ L + +
Sbjct: 3 FHSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITT 61
Query: 481 QNLKVRLD----FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS 536
+ LK + D +K QH +LV LLG S+ + + LVY Y PNGS LS
Sbjct: 62 EELKQQFDQEIKVXAKCQHENLVELLGFS--------SDGDDLCLVYVYXPNGSLLDRLS 113
Query: 537 ENCPENV--LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDY 594
C + L W R I G A ++FLH + + + NILLDE AK+SD+
Sbjct: 114 --CLDGTPPLSWHXRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDF 168
Query: 595 GISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKL--EDDVYNFGFIL 652
G++ E+ + + R + R ++ + D+Y+FG +L
Sbjct: 169 GLARASEKFAQX-------------VXXSRIVGTTAYXAPEALRGEITPKSDIYSFGVVL 215
Query: 653 LESLVG-PIVTGKGEAFLL 670
LE + G P V E LL
Sbjct: 216 LEIITGLPAVDEHREPQLL 234
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 8/203 (3%)
Query: 108 GPLP-DKIHRLSSLELLDMSSNFLFGAIPSGISRL-VRLQTLTMDTNFFDDNV-PDWWDS 164
G LP D + ++ L++LD+S N G +P ++ L L TL + +N F + P+ +
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 388
Query: 165 LSN-LTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRE 222
N L L L++N G+ P ++ + L + +S N LSG +P + +L+ L L L
Sbjct: 389 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 448
Query: 223 NKLDSGLP---LMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLF 279
N L+ +P + K L T++L N +G IP L + LS N L+G P +
Sbjct: 449 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 508
Query: 280 SLPNISYLHLASNMLSGTLPKDL 302
L N++ L L++N SG +P +L
Sbjct: 509 RLENLAILKLSNNSFSGNIPAEL 531
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 86/166 (51%), Gaps = 4/166 (2%)
Query: 118 SSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQ 177
++L+ L + +N G IP +S L +L + N+ +P SLS L L L N
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 178 LKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLMP--- 233
L+G+ P + + TL + + N+L+G++P +S T+L+ + L N+L +P
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 234 KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLF 279
+ L + LS N FSG IP + G+ L LDL+ N +G P+ +F
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 556
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 104/206 (50%), Gaps = 15/206 (7%)
Query: 108 GPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLV-RLQTLTMDTNFFDDNVPDWWDSLS 166
GP+P L SL+ L ++ N G IP +S L L + N F VP ++ S S
Sbjct: 258 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 167 NLTVLSLKSNQLKGQFP-SSICRIATLTDIAMSNNELSGKLPD-MSALT-SLHVLDLREN 223
L L+L SN G+ P ++ ++ L + +S NE SG+LP+ ++ L+ SL LDL N
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 224 KLDSGLPLMPK-------GLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPS 276
P++P L + L N F+G IP ++L L LSFN LSG PS
Sbjct: 376 NFSG--PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Query: 277 VLFSLPNISYLHLASNMLSGTLPKDL 302
L SL + L L NML G +P++L
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEIPQEL 459
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 103/245 (42%), Gaps = 50/245 (20%)
Query: 108 GPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSN 167
G +P + LS L L + N L G IP + + L+TL +D N +P + +N
Sbjct: 429 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 488
Query: 168 LTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP-DMSALTSLHVLDLRENKLD 226
L +SL +N+L G+ P I R+ L + +SNN SG +P ++ SL LDL N +
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 548
Query: 227 SGLP--------------------------------------LMPKGLVTVLLSR----- 243
+P L +G+ + L+R
Sbjct: 549 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 608
Query: 244 ------NLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGT 297
++ G F + LD+S+N LSG P + S+P + L+L N +SG+
Sbjct: 609 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 668
Query: 298 LPKDL 302
+P ++
Sbjct: 669 IPDEV 673
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 101/218 (46%), Gaps = 32/218 (14%)
Query: 116 RLSSLELLDMSSNFLFGAIPSG-------------------------ISRLVRLQTLTMD 150
+L+SLE+LD+S+N + GA G +SR V L+ L +
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS 205
Query: 151 TNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMS 210
+N F +P D S L L + N+L G F +I L + +S+N+ G +P +
Sbjct: 206 SNNFSTGIPFLGDC-SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL- 263
Query: 211 ALTSLHVLDLRENKLDSGLPLMPKGLVTVL----LSRNLFSGAIPQQFGELAQLQHLDLS 266
L SL L L ENK +P G L LS N F GA+P FG + L+ L LS
Sbjct: 264 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 323
Query: 267 FNDLSG-IPPSVLFSLPNISYLHLASNMLSGTLPKDLS 303
N+ SG +P L + + L L+ N SG LP+ L+
Sbjct: 324 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 361
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 56/113 (49%)
Query: 119 SLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQL 178
S+ LDMS N L G IP I + L L + N ++PD L L +L L SN+L
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 179 KGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPL 231
G+ P ++ + LT+I +SNN LSG +P+M + N G PL
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 742
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 99/232 (42%), Gaps = 30/232 (12%)
Query: 108 GPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSN 167
G +P + ++L + +S+N L G IP I RL L L + N F N+P +
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 536
Query: 168 LTVLSLKSNQLKGQFPSSICR---------IATLTDIAMSNNELSGKLPDMSALTSLHVL 218
L L L +N G P+++ + IA + + N+ + + L L
Sbjct: 537 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL--LEFQ 594
Query: 219 DLRENKLDSGLPLMPKGLVTVL-------------------LSRNLFSGAIPQQFGELAQ 259
+R +L+ P + + + +S N+ SG IP++ G +
Sbjct: 595 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 654
Query: 260 LQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSI 311
L L+L ND+SG P + L ++ L L+SN L G +P+ +S + L I
Sbjct: 655 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 138 ISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAM 197
++RL + + + + +D+ ++ L + N L G P I + L + +
Sbjct: 601 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 660
Query: 198 SNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGE 256
+N++SG +PD + L L++LDL NKLD G IPQ
Sbjct: 661 GHNDISGSIPDEVGDLRGLNILDLSSNKLD---------------------GRIPQAMSA 699
Query: 257 LAQLQHLDLSFNDLSGIPPSV 277
L L +DLS N+LSG P +
Sbjct: 700 LTMLTEIDLSNNNLSGPIPEM 720
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 37/192 (19%)
Query: 118 SSLELLDMSSNFLFGAIPS--GISRLVRLQTLTMDTNFFDDNVPDWWDS---LSNLTVLS 172
+SL LD+S N L G + + + L+ L + +N D P L++L VL
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLD 154
Query: 173 LKSNQLKGQ-----FPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDS 227
L +N + G S C L +A+S N++SG + D+S +L LD+ N +
Sbjct: 155 LSANSISGANVVGWVLSDGC--GELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNFST 211
Query: 228 GLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYL 287
G+P + G+ + LQHLD+S N LSG + + + L
Sbjct: 212 GIPFL----------------------GDCSALQHLDISGNKLSGDFSRAISTCTELKLL 249
Query: 288 HLASNMLSGTLP 299
+++SN G +P
Sbjct: 250 NISSNQFVGPIP 261
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 106 IWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPD 160
I G +PD++ L L +LD+SSN L G IP +S L L + + N +P+
Sbjct: 665 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 8/203 (3%)
Query: 108 GPLP-DKIHRLSSLELLDMSSNFLFGAIPSGISRL-VRLQTLTMDTNFFDDNV-PDWWDS 164
G LP D + ++ L++LD+S N G +P ++ L L TL + +N F + P+ +
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391
Query: 165 LSN-LTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRE 222
N L L L++N G+ P ++ + L + +S N LSG +P + +L+ L L L
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451
Query: 223 NKLDSGLP---LMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLF 279
N L+ +P + K L T++L N +G IP L + LS N L+G P +
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511
Query: 280 SLPNISYLHLASNMLSGTLPKDL 302
L N++ L L++N SG +P +L
Sbjct: 512 RLENLAILKLSNNSFSGNIPAEL 534
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 86/166 (51%), Gaps = 4/166 (2%)
Query: 118 SSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQ 177
++L+ L + +N G IP +S L +L + N+ +P SLS L L L N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 178 LKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLMP--- 233
L+G+ P + + TL + + N+L+G++P +S T+L+ + L N+L +P
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 234 KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLF 279
+ L + LS N FSG IP + G+ L LDL+ N +G P+ +F
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 104/206 (50%), Gaps = 15/206 (7%)
Query: 108 GPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLV-RLQTLTMDTNFFDDNVPDWWDSLS 166
GP+P L SL+ L ++ N G IP +S L L + N F VP ++ S S
Sbjct: 261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 167 NLTVLSLKSNQLKGQFP-SSICRIATLTDIAMSNNELSGKLPD-MSALT-SLHVLDLREN 223
L L+L SN G+ P ++ ++ L + +S NE SG+LP+ ++ L+ SL LDL N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 224 KLDSGLPLMPK-------GLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPS 276
P++P L + L N F+G IP ++L L LSFN LSG PS
Sbjct: 379 NFSG--PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Query: 277 VLFSLPNISYLHLASNMLSGTLPKDL 302
L SL + L L NML G +P++L
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQEL 462
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 103/245 (42%), Gaps = 50/245 (20%)
Query: 108 GPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSN 167
G +P + LS L L + N L G IP + + L+TL +D N +P + +N
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491
Query: 168 LTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLP-DMSALTSLHVLDLRENKLD 226
L +SL +N+L G+ P I R+ L + +SNN SG +P ++ SL LDL N +
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
Query: 227 SGLP--------------------------------------LMPKGLVTVLLSR----- 243
+P L +G+ + L+R
Sbjct: 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611
Query: 244 ------NLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGT 297
++ G F + LD+S+N LSG P + S+P + L+L N +SG+
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671
Query: 298 LPKDL 302
+P ++
Sbjct: 672 IPDEV 676
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 101/218 (46%), Gaps = 32/218 (14%)
Query: 116 RLSSLELLDMSSNFLFGAIPSG-------------------------ISRLVRLQTLTMD 150
+L+SLE+LD+S+N + GA G +SR V L+ L +
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS 208
Query: 151 TNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMS 210
+N F +P D S L L + N+L G F +I L + +S+N+ G +P +
Sbjct: 209 SNNFSTGIPFLGDC-SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL- 266
Query: 211 ALTSLHVLDLRENKLDSGLPLMPKGLVTVL----LSRNLFSGAIPQQFGELAQLQHLDLS 266
L SL L L ENK +P G L LS N F GA+P FG + L+ L LS
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 267 FNDLSG-IPPSVLFSLPNISYLHLASNMLSGTLPKDLS 303
N+ SG +P L + + L L+ N SG LP+ L+
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 56/113 (49%)
Query: 119 SLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQL 178
S+ LDMS N L G IP I + L L + N ++PD L L +L L SN+L
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 179 KGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPL 231
G+ P ++ + LT+I +SNN LSG +P+M + N G PL
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 99/232 (42%), Gaps = 30/232 (12%)
Query: 108 GPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSN 167
G +P + ++L + +S+N L G IP I RL L L + N F N+P +
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539
Query: 168 LTVLSLKSNQLKGQFPSSICR---------IATLTDIAMSNNELSGKLPDMSALTSLHVL 218
L L L +N G P+++ + IA + + N+ + + L L
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL--LEFQ 597
Query: 219 DLRENKLDSGLPLMPKGLVTVL-------------------LSRNLFSGAIPQQFGELAQ 259
+R +L+ P + + + +S N+ SG IP++ G +
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657
Query: 260 LQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSI 311
L L+L ND+SG P + L ++ L L+SN L G +P+ +S + L I
Sbjct: 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 138 ISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAM 197
++RL + + + + +D+ ++ L + N L G P I + L + +
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663
Query: 198 SNNELSGKLPD-MSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGE 256
+N++SG +PD + L L++LDL NKLD G IPQ
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLD---------------------GRIPQAMSA 702
Query: 257 LAQLQHLDLSFNDLSGIPPSV 277
L L +DLS N+LSG P +
Sbjct: 703 LTMLTEIDLSNNNLSGPIPEM 723
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 37/192 (19%)
Query: 118 SSLELLDMSSNFLFGAIPS--GISRLVRLQTLTMDTNFFDDNVPDWWDS---LSNLTVLS 172
+SL LD+S N L G + + + L+ L + +N D P L++L VL
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLD 157
Query: 173 LKSNQLKGQ-----FPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDS 227
L +N + G S C L +A+S N++SG + D+S +L LD+ N +
Sbjct: 158 LSANSISGANVVGWVLSDGC--GELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNFST 214
Query: 228 GLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYL 287
G+P + G+ + LQHLD+S N LSG + + + L
Sbjct: 215 GIPFL----------------------GDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252
Query: 288 HLASNMLSGTLP 299
+++SN G +P
Sbjct: 253 NISSNQFVGPIP 264
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 106 IWGPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPD 160
I G +PD++ L L +LD+SSN L G IP +S L L + + N +P+
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 27/192 (14%)
Query: 108 GPLPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSN 167
GP+P I +L+ L L ++ + GAIP +S++ L TL N +P SL N
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 168 LTVLSLKSNQLKGQFPSSICRIATL-TDIAMSNNELSGKLPDMSALTSLHVLDLRENKL- 225
L ++ N++ G P S + L T + +S N L+GK+P A +L +DL N L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210
Query: 226 -------------------------DSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQL 260
D G + K L + L N G +PQ +L L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 261 QHLDLSFNDLSG 272
L++SFN+L G
Sbjct: 271 HSLNVSFNNLCG 282
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 88/200 (44%), Gaps = 6/200 (3%)
Query: 109 PLPDKIHRLSSLELLDMSS-NFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSN 167
P+P + L L L + N L G IP I++L +L L + +PD+ +
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 168 LTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHV-LDLRENKL 225
L L N L G P SI + L I N +SG +PD + + L + + N+L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 226 DSGLP--LMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPN 283
+P L V LSRN+ G FG Q + L+ N L+ V S N
Sbjct: 187 TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-KN 245
Query: 284 ISYLHLASNMLSGTLPKDLS 303
++ L L +N + GTLP+ L+
Sbjct: 246 LNGLDLRNNRIYGTLPQGLT 265
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 167 NLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLD 226
NL L L++N++ G P + ++ L + +S N L G++P L V NK
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304
Query: 227 SGLPL 231
G PL
Sbjct: 305 CGSPL 309
>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|E Chain E, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|D Chain D, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4N|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E4N|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E5W|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4E5W|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4EHZ|A Chain A, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|B Chain B, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|C Chain C, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|D Chain D, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EI4|A Chain A, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4EI4|B Chain B, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4FK6|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
pdb|4FK6|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
Length = 302
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 124/291 (42%), Gaps = 39/291 (13%)
Query: 448 MGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYS----IQNLKVRLDFLSKLQHPHL 498
+GEG GK+ R + G VA++SL K S I +LK ++ L L H ++
Sbjct: 29 LGEGHFGKVELCRYDPEGDNTGEQVAVKSL---KPESGGNHIADLKKEIEILRNLYHENI 85
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V G C E G N + L+ E++P+GS + +L +N +N + +L + + K
Sbjct: 86 VKYKGICTEDGG------NGIKLIMEFLPSGSLKEYLPKN--KNKINLKQQLKYAVQICK 137
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIME-EHEKLEAKGEGPKAR 616
+ +L S + +R L N+L++ K+ D+G++ +E + E K +
Sbjct: 138 GMDYLGSR----QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPV 193
Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF 676
+ + C ++ + DV++FG L E L A L +
Sbjct: 194 FWYAPECLMQSKFYIA----------SDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPT 243
Query: 677 GSQDGRRRIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
Q R+V+ + C V + KC +PS+R SF++++
Sbjct: 244 HGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLI 294
>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3EYH|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 290
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 124/291 (42%), Gaps = 39/291 (13%)
Query: 448 MGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYS----IQNLKVRLDFLSKLQHPHL 498
+GEG GK+ R + G VA++SL K S I +LK ++ L L H ++
Sbjct: 17 LGEGHFGKVELCRYDPEGDNTGEQVAVKSL---KPESGGNHIADLKKEIEILRNLYHENI 73
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V G C E G N + L+ E++P+GS + +L +N +N + +L + + K
Sbjct: 74 VKYKGICTEDGG------NGIKLIMEFLPSGSLKEYLPKN--KNKINLKQQLKYAVQICK 125
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIME-EHEKLEAKGEGPKAR 616
+ +L S + +R L N+L++ K+ D+G++ +E + E K +
Sbjct: 126 GMDYLGSR----QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKDDRDSPV 181
Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF 676
+ + C ++ + DV++FG L E L A L +
Sbjct: 182 FWYAPECLMQSKFYIA----------SDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPT 231
Query: 677 GSQDGRRRIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
Q R+V+ + C V + KC +PS+R SF++++
Sbjct: 232 HGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLI 282
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 115/291 (39%), Gaps = 44/291 (15%)
Query: 448 MGEGSRGKLYKGRLEN------GTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
+GEG+ GK++ N VA+++L + + Q+ + + L+ LQH H+V
Sbjct: 49 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 108
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP--------ENVLKWSDRLAIL 553
G C E + +V+EY+ +G L + P E+V L L
Sbjct: 109 FGVCTEG--------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQL 160
Query: 554 IGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEG 612
+ VA V + F +R L T N L+ + + K+ D+G+S + + G
Sbjct: 161 LAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGR- 219
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE 672
L I E+++ ++ E DV++FG +L E GK + L+
Sbjct: 220 -----TMLPIRWMPPESIL----YRKFTTESDVWSFGVVLWEIF----TYGKQPWYQLSN 266
Query: 673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+ R + P C E V +I C EP R S +DV
Sbjct: 267 TEAIDCITQGRELERP---RACPPE----VYAIMRGCWQREPQQRHSIKDV 310
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
+G+G G+++ G T VAI++L T + +Q +V + KL+H LV L
Sbjct: 275 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 330
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
E +++V EY+ GS L + + RL L+ +A +
Sbjct: 331 VSE---------EPIYIVTEYMSKGSLLDFLKGETGKYL-----RLPQLVDMAAQIASGM 376
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
+ V ++ +R L NIL+ E+ + K++D+G++ ++E++E AR G F
Sbjct: 377 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT--------ARQGAKFPI 428
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
+ +A + R ++ DV++FG +L E +T KG + R
Sbjct: 429 KWTAPEAAL---YGRFTIKSDVWSFGILLTE------LTTKGRVPYPGMV--------NR 471
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
++D V C E + + +C EP RP+FE
Sbjct: 472 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 512
>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXP|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 318
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 120/301 (39%), Gaps = 61/301 (20%)
Query: 448 MGEGSRGK--LYKGRLEN---GTYVAIRSLTF-LKKYSIQNLKVRLDFLSKLQHPHLVSL 501
+GEG GK LY N G VA+++L K +D L L H H++
Sbjct: 39 LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKY 98
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
G C +D+ + LV EY+P GS R +L P + + + L + + +
Sbjct: 99 KGCC------EDAGAASLQLVMEYVPLGSLRDYL----PRHSIGLAQLLLFAQQICEGMA 148
Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS-IIMEEHEKLEAKGEGPKARYGF 619
+LH+ + +R L N+LLD R+ K+ D+G++ + E HE + +G + +
Sbjct: 149 YLHAQ----HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEXYRVREDGDSPVFWY 204
Query: 620 LFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE----------------SLVGPIVTG 663
C + + DV++FG L E L+G I G
Sbjct: 205 APEC----------LKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIG-IAQG 253
Query: 664 KGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+ L E+ G R+ P C E V + C E S RP+FE++
Sbjct: 254 QMTVLRLTELLERGE-----RLPRP---DKCPAE----VYHLMKNCWETEASFRPTFENL 301
Query: 724 L 724
+
Sbjct: 302 I 302
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 115/291 (39%), Gaps = 44/291 (15%)
Query: 448 MGEGSRGKLYKGRLEN------GTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
+GEG+ GK++ N VA+++L + + Q+ + + L+ LQH H+V
Sbjct: 20 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 79
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP--------ENVLKWSDRLAIL 553
G C E + +V+EY+ +G L + P E+V L L
Sbjct: 80 FGVCTEG--------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQL 131
Query: 554 IGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEG 612
+ VA V + F +R L T N L+ + + K+ D+G+S + + G
Sbjct: 132 LAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGR- 190
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE 672
L I E+++ ++ E DV++FG +L E GK + L+
Sbjct: 191 -----TMLPIRWMPPESIL----YRKFTTESDVWSFGVVLWEIF----TYGKQPWYQLSN 237
Query: 673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+ R + P C E V +I C EP R S +DV
Sbjct: 238 TEAIDCITQGRELERP---RACPPE----VYAIMRGCWQREPQQRHSIKDV 281
>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With
Quinoline-Thiadiazole- Thiophene Inhibitor
Length = 302
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 128/330 (38%), Gaps = 74/330 (22%)
Query: 423 GSPA-----YRTFYLEELKEATNNFDSLSFMGEGSRGK--LYKGRLEN---GTYVAIRSL 472
GSPA + YL+++++ +GEG GK LY N G VA+++L
Sbjct: 2 GSPASDPTVFHKRYLKKIRD----------LGEGHFGKVSLYCYDPTNDGTGEMVAVKAL 51
Query: 473 TF-LKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSY 531
K +D L L H H++ G C +D + LV EY+P GS
Sbjct: 52 KADCGPQHRSGWKQEIDILRTLYHEHIIKYKGCC------EDQGEKSLQLVMEYVPLGSL 105
Query: 532 RAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL 591
R +L P + + + L + + + +LHS L N+LLD R+ K+
Sbjct: 106 RDYL----PRHSIGLAQLLLFAQQICEGMAYLHSQ---HYIHRNLAARNVLLDNDRLVKI 158
Query: 592 SDYGIS-IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGF 650
D+G++ + E HE + +G + + C + + DV++FG
Sbjct: 159 GDFGLAKAVPEGHEYYRVREDGDSPVFWYAPEC----------LKEYKFYYASDVWSFGV 208
Query: 651 ILLE----------------SLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTC 694
L E L+G I G+ L E+ G R+ P C
Sbjct: 209 TLYELLTHCDSSQSPPTKFLELIG-IAQGQMTVLRLTELLERGE-----RLPRP---DKC 259
Query: 695 SQESLSIVVSITNKCICPEPSSRPSFEDVL 724
E V + C E S RP+FE+++
Sbjct: 260 PCE----VYHLMKNCWETEASFRPTFENLI 285
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 115/291 (39%), Gaps = 44/291 (15%)
Query: 448 MGEGSRGKLYKGRLEN------GTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
+GEG+ GK++ N VA+++L + + Q+ + + L+ LQH H+V
Sbjct: 26 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 85
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP--------ENVLKWSDRLAIL 553
G C E + +V+EY+ +G L + P E+V L L
Sbjct: 86 FGVCTEG--------RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQL 137
Query: 554 IGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEG 612
+ VA V + F +R L T N L+ + + K+ D+G+S + + G
Sbjct: 138 LAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGR- 196
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNE 672
L I E+++ ++ E DV++FG +L E GK + L+
Sbjct: 197 -----TMLPIRWMPPESIL----YRKFTTESDVWSFGVVLWEIF----TYGKQPWYQLSN 243
Query: 673 MASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+ R + P C E V +I C EP R S +DV
Sbjct: 244 TEAIDCITQGRELERP---RACPPE----VYAIMRGCWQREPQQRHSIKDV 287
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 119/278 (42%), Gaps = 44/278 (15%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
+G+G G+++ G T VAI++L T + +Q +V + KL+H LV L
Sbjct: 19 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 74
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
E +++V EY+ GS L + + RL L+ +A +
Sbjct: 75 VSE---------EPIYIVTEYMSKGSLLDFLKGETGKYL-----RLPQLVDMAAQIASGM 120
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
+ V ++ +R L NIL+ E+ + K++D+G++ ++E++E AR G F
Sbjct: 121 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 172
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
+ +A + R ++ DV++FG +L E V G ++N + G R
Sbjct: 173 KWTAPEAAL---YGRFTIKSDVWSFGILLTELTTKGRVPYPG---MVNREVLDQVERGYR 226
Query: 684 RIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
C E + + +C EP RP+FE
Sbjct: 227 --------MPCPPECPESLHDLMCQCWRKEPEERPTFE 256
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
+G+G G+++ G T VAI++L T + +Q +V + KL+H LV L
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 247
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
E +++V EY+ GS L + + RL L+ +A +
Sbjct: 248 VSE---------EPIYIVTEYMSKGSLLDFLKGETGKYL-----RLPQLVDMAAQIASGM 293
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
+ V ++ +R L NIL+ E+ + K++D+G++ ++E++E AR G F
Sbjct: 294 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 345
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
+ +A + R ++ DV++FG +L E V G ++N R
Sbjct: 346 KWTAPEAAL---YGRFTIKSDVWSFGILLTELTTKGRVPYPG---MVN-----------R 388
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
++D V C E + + +C EP RP+FE
Sbjct: 389 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 429
>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6
Length = 302
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 128/330 (38%), Gaps = 74/330 (22%)
Query: 423 GSPA-----YRTFYLEELKEATNNFDSLSFMGEGSRGK--LYKGRLEN---GTYVAIRSL 472
GSPA + YL+++++ +GEG GK LY N G VA+++L
Sbjct: 2 GSPASDPTVFHKRYLKKIRD----------LGEGHFGKVSLYCYDPTNDGTGEMVAVKAL 51
Query: 473 TF-LKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSY 531
K +D L L H H++ G C +D + LV EY+P GS
Sbjct: 52 KADCGPQHRSGWKQEIDILRTLYHEHIIKYKGCC------EDQGEKSLQLVMEYVPLGSL 105
Query: 532 RAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL 591
R +L P + + + L + + + +LH+ L N+LLD R+ K+
Sbjct: 106 RDYL----PRHSIGLAQLLLFAQQICEGMAYLHAQ---HYIHRNLAARNVLLDNDRLVKI 158
Query: 592 SDYGIS-IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGF 650
D+G++ + E HE + +G + + C + + DV++FG
Sbjct: 159 GDFGLAKAVPEGHEYYRVREDGDSPVFWYAPEC----------LKEYKFYYASDVWSFGV 208
Query: 651 ILLE----------------SLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTC 694
L E L+G I G+ L E+ G R+ P C
Sbjct: 209 TLYELLTHCDSSQSPPTKFLELIG-IAQGQMTVLRLTELLERGE-----RLPRP---DKC 259
Query: 695 SQESLSIVVSITNKCICPEPSSRPSFEDVL 724
E V + C E S RP+FE+++
Sbjct: 260 PCE----VYHLMKNCWETEASFRPTFENLI 285
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
+G+G G+++ G T VAI++L T + +Q +V + KL+H LV L
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 247
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
E +++V EY+ GS L + + RL L+ +A +
Sbjct: 248 VSE---------EPIYIVTEYMSKGSLLDFLKGETGKYL-----RLPQLVDMAAQIASGM 293
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
+ V ++ +R L NIL+ E+ + K++D+G++ ++E++E AR G F
Sbjct: 294 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 345
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
+ +A + R ++ DV++FG +L E V G ++N R
Sbjct: 346 KWTAPEAAL---YGRFTIKSDVWSFGILLTELTTKGRVPYPG---MVN-----------R 388
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
++D V C E + + +C EP RP+FE
Sbjct: 389 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 429
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
+G+G G+++ G T VAI++L T + +Q +V + KL+H LV L
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 247
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
E +++V EY+ GS L + + RL L+ +A +
Sbjct: 248 VSE---------EPIYIVGEYMSKGSLLDFLKGETGKYL-----RLPQLVDMAAQIASGM 293
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
+ V ++ +R L NIL+ E+ + K++D+G++ ++E++E AR G F
Sbjct: 294 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 345
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
+ +A + R ++ DV++FG +L E V G ++N R
Sbjct: 346 KWTAPEAAL---YGRFTIKSDVWSFGILLTELTTKGRVPYPG---MVN-----------R 388
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
++D V C E + + +C EP RP+FE
Sbjct: 389 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 429
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
+G+G G+++ G T VAI++L T + +Q +V + KL+H LV L
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 81
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
E +++V EY+ GS L + + RL L+ +A +
Sbjct: 82 VSE---------EPIYIVIEYMSKGSLLDFLKGEMGKYL-----RLPQLVDMAAQIASGM 127
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
+ V ++ +R L NIL+ E+ + K++D+G++ ++E++E AR G F
Sbjct: 128 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEX--------TARQGAKFPI 179
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
+ +A + R ++ DV++FG +L E +T KG + R
Sbjct: 180 KWTAPEAAL---YGRFTIKSDVWSFGILLTE------LTTKGRVPYPGMV--------NR 222
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
++D V C E + + +C +P RP+FE
Sbjct: 223 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263
>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 291
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 34/219 (15%)
Query: 448 MGEGSRGK--LYKGRLEN---GTYVAIRSLTFLKKYSIQN-LKVRLDFLSKLQHPHLVSL 501
+GEG GK LY N G VA+++L +++ + ++ L L H H+V
Sbjct: 17 LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKY 76
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP--ENVLKWSDRLAILIGVAKA 559
G C +D V LV EY+P GS R +L +C +L ++ ++ + A
Sbjct: 77 KGCC------EDQGEKSVQLVMEYVPLGSLRDYLPRHCVGLAQLLLFAQQICEGMAYLHA 130
Query: 560 VHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS-IIMEEHEKLEAKGEGPKARYG 618
H++H + L N+LLD R+ K+ D+G++ + E HE + +G +
Sbjct: 131 QHYIHRA---------LAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFW 181
Query: 619 FLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV 657
+ C + DV++FG L E L
Sbjct: 182 YAPECLKEC----------KFYYASDVWSFGVTLYELLT 210
>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 290
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 94/218 (43%), Gaps = 34/218 (15%)
Query: 448 MGEGSRGK--LYKGRLEN---GTYVAIRSLTFLKKYSIQN-LKVRLDFLSKLQHPHLVSL 501
+GEG GK LY N G VA+++L +++ + ++ L L H H+V
Sbjct: 16 LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKY 75
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP--ENVLKWSDRLAILIGVAKA 559
G C +D V LV EY+P GS R +L +C +L ++ ++ + A
Sbjct: 76 KGCC------EDQGEKSVQLVMEYVPLGSLRDYLPRHCVGLAQLLLFAQQICEGMAYLHA 129
Query: 560 VHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS-IIMEEHEKLEAKGEGPKARYG 618
H++H + L N+LLD R+ K+ D+G++ + E HE + +G +
Sbjct: 130 QHYIHRA---------LAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFW 180
Query: 619 FLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
+ C + DV++FG L E L
Sbjct: 181 YAPECLKEC----------KFYYASDVWSFGVTLYELL 208
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
+G+G G+++ G T VAI++L T + +Q +V + KL+H LV L
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 81
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
E +++V EY+ GS L + + RL L+ +A +
Sbjct: 82 VSE---------EPIYIVTEYMSKGSLLDFLKGEMGKYL-----RLPQLVDMAAQIASGM 127
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
+ V ++ +R L NIL+ E+ + K++D+G++ ++E++E AR G F
Sbjct: 128 AYVERMNYVHRDLAAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 179
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
+ +A + R ++ DV++FG +L E +T KG + R
Sbjct: 180 KWTAPEAAL---YGRFTIKSDVWSFGILLTE------LTTKGRVPYPGMV--------NR 222
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
++D V C E + + +C +P RP+FE
Sbjct: 223 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 118/278 (42%), Gaps = 44/278 (15%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
+G+G G+++ G T VAI++L T + +Q +V + KL+H LV L
Sbjct: 16 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 71
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
E + +V EY+ GS L + + RL L+ +A +
Sbjct: 72 VSE---------EPIXIVTEYMSKGSLLDFLKGETGKYL-----RLPQLVDMAAQIASGM 117
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
+ V ++ +R L NIL+ E+ + K++D+G++ ++E++E AR G F
Sbjct: 118 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEX--------TARQGAKFPI 169
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
+ +A + R ++ DV++FG +L E V G ++N + G R
Sbjct: 170 KWTAPEAAL---YGRFTIKSDVWSFGILLTELTTKGRVPYPG---MVNREVLDQVERGYR 223
Query: 684 RIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
C E + + +C EP RP+FE
Sbjct: 224 --------MPCPPECPESLHDLMCQCWRKEPEERPTFE 253
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
+G+G G+++ G T VAI++L T + +Q +V + KL+H LV L
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 81
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
E +++V EY+ GS L + + RL L+ +A +
Sbjct: 82 VSE---------EPIYIVIEYMSKGSLLDFLKGEMGKYL-----RLPQLVDMAAQIASGM 127
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
+ V ++ +R L NIL+ E+ + K++D+G++ ++E++E AR G F
Sbjct: 128 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 179
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
+ +A + R ++ DV++FG +L E +T KG + R
Sbjct: 180 KWTAPEAAL---YGRFTIKSDVWSFGILLTE------LTTKGRVPYPGMV--------NR 222
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
++D V C E + + +C +P RP+FE
Sbjct: 223 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
+G+G G+++ G T VAI++L T + +Q +V + KL+H LV L
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 81
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
E +++V EY+ GS L + + RL L+ +A +
Sbjct: 82 VSE---------EPIYIVTEYMSKGSLLDFLKGEMGKYL-----RLPQLVDMAAQIASGM 127
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
+ V ++ +R L NIL+ E+ + K++D+G++ ++E++E AR G F
Sbjct: 128 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 179
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
+ +A + R ++ DV++FG +L E +T KG + R
Sbjct: 180 KWTAPEAAL---YGRFTIKSDVWSFGILLTE------LTTKGRVPYPGMV--------NR 222
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
++D V C E + + +C +P RP+FE
Sbjct: 223 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
+G+G G+++ G T VAI++L T + +Q +V + KL+H LV L
Sbjct: 23 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 78
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
E +++V EY+ GS L + + RL L+ ++ +
Sbjct: 79 VSE---------EPIYIVTEYMNKGSLLDFLKGETGKYL-----RLPQLVDMSAQIASGM 124
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
+ V ++ +R L NIL+ E+ + K++D+G++ ++E++E AR G F
Sbjct: 125 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEW--------TARQGAKFPI 176
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
+ +A + R ++ DV++FG +L E V G ++N R
Sbjct: 177 KWTAPEAAL---YGRFTIKSDVWSFGILLTELTTKGRVPYPG---MVN-----------R 219
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
++D V C E + + +C EP RP+FE
Sbjct: 220 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 260
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 119/278 (42%), Gaps = 44/278 (15%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
+G+G G+++ G T VAI++L T + +Q +V + KL+H LV L
Sbjct: 15 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 70
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
E +++V EY+ GS L + + RL L+ +A +
Sbjct: 71 VSE---------EPIYIVTEYMSKGSLLDFLKGEMGKYL-----RLPQLVDMAAQIASGM 116
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
+ V ++ +R L NIL+ E+ + K++D+G++ ++E++E AR G F
Sbjct: 117 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 168
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
+ +A + R ++ DV++FG +L E V G ++N + G R
Sbjct: 169 KWTAPEAAL---YGRFTIKSDVWSFGILLTELTTKGRVPYPG---MVNREVLDQVERGYR 222
Query: 684 RIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
C E + + +C +P RP+FE
Sbjct: 223 --------MPCPPECPESLHDLMCQCWRKDPEERPTFE 252
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 119/278 (42%), Gaps = 44/278 (15%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
+G+G G+++ G T VAI++L T + +Q +V + KL+H LV L
Sbjct: 17 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 72
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
E +++V EY+ GS L + + RL L+ +A +
Sbjct: 73 VSE---------EPIYIVTEYMSKGSLLDFLKGEMGKYL-----RLPQLVDMAAQIASGM 118
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
+ V ++ +R L NIL+ E+ + K++D+G++ ++E++E AR G F
Sbjct: 119 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 170
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
+ +A + R ++ DV++FG +L E V G ++N + G R
Sbjct: 171 KWTAPEAAL---YGRFTIKSDVWSFGILLTELTTKGRVPYPG---MVNREVLDQVERGYR 224
Query: 684 RIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
C E + + +C +P RP+FE
Sbjct: 225 --------MPCPPECPESLHDLMCQCWRKDPEERPTFE 254
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 127/295 (43%), Gaps = 58/295 (19%)
Query: 446 SFMGEGSRGKLYKGRLENGTYVAIRSLTFLK----KYSIQNLKVRLDFLSKLQHPHLVSL 501
+G G GK+Y+ G VA+++ +I+N++ + L+HP++++L
Sbjct: 13 EIIGIGGFGKVYRA-FWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIAL 71
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-ENCPENVL-KWSDRLAILIGVAKA 559
G C++ + + LV E+ G LS + P ++L W+ + +A+
Sbjct: 72 RGVCLKEPN--------LCLVMEFARGGPLNRVLSGKRIPPDILVNWA------VQIARG 117
Query: 560 VHFLHSSVISGSFSNRLTTNNILLDE--------HRIAKLSDYGISIIMEEHEKLEAKGE 611
+++LH I L ++NIL+ + ++I K++D+G++ K+ A G
Sbjct: 118 MNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGA 177
Query: 612 GPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG--PIVTGKGEAFL 669
Y ++ A V+ + DV+++G +L E L G P G A
Sbjct: 178 -----YAWM------APEVIRASMFSKGS---DVWSYGVLLWELLTGEVPFRGIDGLA-- 221
Query: 670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
++G + + P +TC + + C P+P SRPSF ++L
Sbjct: 222 ----VAYGVAMNKLALPIP---STCPEP----FAKLMEDCWNPDPHSRPSFTNIL 265
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
+G+G G+++ G T VAI++L T + +Q +V + KL+H LV L
Sbjct: 23 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 78
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
E +++V EY+ GS L + + RL L+ ++ +
Sbjct: 79 VSE---------EPIYIVTEYMNKGSLLDFLKGETGKYL-----RLPQLVDMSAQIASGM 124
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
+ V ++ +R L NIL+ E+ + K++D+G++ ++E++E AR G F
Sbjct: 125 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 176
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
+ +A + R ++ DV++FG +L E V G ++N R
Sbjct: 177 KWTAPEAAL---YGRFTIKSDVWSFGILLTELTTKGRVPYPG---MVN-----------R 219
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
++D V C E + + +C EP RP+FE
Sbjct: 220 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFE 260
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
+G+G G+++ G T VAI++L T + +Q +V + KL+H LV L
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 81
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
E +++V EY+ GS L + + RL L+ +A +
Sbjct: 82 VSE---------EPIYIVCEYMSKGSLLDFLKGEMGKYL-----RLPQLVDMAAQIASGM 127
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
+ V ++ +R L NIL+ E+ + K++D+G++ ++E++E AR G F
Sbjct: 128 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 179
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
+ +A + R ++ DV++FG +L E +T KG + R
Sbjct: 180 KWTAPEAAL---YGRFTIKSDVWSFGILLTE------LTTKGRVPYPGMV--------NR 222
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
++D V C E + + +C +P RP+FE
Sbjct: 223 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 117/285 (41%), Gaps = 44/285 (15%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G GS G +YKG+ V + ++T +Q K + L K +H +++ +G+
Sbjct: 32 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 88
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
S ++ +V ++ S HL + E + + I A+ + +LH+
Sbjct: 89 ------STAPQLAIVTQWCEGSSLYHHL--HASETKFEMKKLIDIARQTARGMDYLHAKS 140
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
I L +NNI L E K+ D+G++ E + + + L++ A
Sbjct: 141 I---IHRDLKSNNIFLHEDNTVKIGDFGLAT---EKSRWSGSHQFEQLSGSILWM----A 190
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVD 687
V+ + D + DVY FG +L E + G + + + + R +I++
Sbjct: 191 PEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQL--------------PYSNINNRDQIIE 236
Query: 688 PVVLTTCSQESLSIVVS--------ITNKCICPEPSSRPSFEDVL 724
V + S + LS V S + +C+ + RPSF +L
Sbjct: 237 MVGRGSLSPD-LSKVRSNCPKRMKRLMAECLKKKRDERPSFPRIL 280
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 117/285 (41%), Gaps = 44/285 (15%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G GS G +YKG+ V + ++T +Q K + L K +H +++ +G+
Sbjct: 32 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 88
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
S ++ +V ++ S HL + E + + I A+ + +LH+
Sbjct: 89 ------STKPQLAIVTQWCEGSSLYHHL--HASETKFEMKKLIDIARQTARGMDYLHAKS 140
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
I L +NNI L E K+ D+G++ E + + + L++ A
Sbjct: 141 I---IHRDLKSNNIFLHEDNTVKIGDFGLAT---EKSRWSGSHQFEQLSGSILWM----A 190
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVD 687
V+ + D + DVY FG +L E + G + + + + R +I++
Sbjct: 191 PEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQL--------------PYSNINNRDQIIE 236
Query: 688 PVVLTTCSQESLSIVVS--------ITNKCICPEPSSRPSFEDVL 724
V + S + LS V S + +C+ + RPSF +L
Sbjct: 237 MVGRGSLSPD-LSKVRSNCPKRMKRLMAECLKKKRDERPSFPRIL 280
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 121/281 (43%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
+G+G G+++ G T VAI++L T + +Q +V + K++H LV L
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKIRHEKLVQLYAV 81
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
E +++V EY+ GS L + + RL L+ +A +
Sbjct: 82 VSE---------EPIYIVTEYMSKGSLLDFLKGEMGKYL-----RLPQLVDMAAQIASGM 127
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
+ V ++ +R L NIL+ E+ + K++D+G++ ++E++E AR G F
Sbjct: 128 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 179
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
+ +A + R ++ DV++FG +L E +T KG + R
Sbjct: 180 KWTAPEAAL---YGRFTIKSDVWSFGILLTE------LTTKGRVPYPGMV--------NR 222
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
++D V C E + + +C +P RP+FE
Sbjct: 223 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 120/281 (42%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
+G+G G+++ G T VAI++L T + +Q +V + KL+H LV L
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 81
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
E +++V EY+ G L + + RL L+ +A +
Sbjct: 82 VSE---------EPIYIVMEYMSKGCLLDFLKGEMGKYL-----RLPQLVDMAAQIASGM 127
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
+ V ++ +R L NIL+ E+ + K++D+G++ ++E++E AR G F
Sbjct: 128 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 179
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
+ +A + R ++ DV++FG +L E V G ++N R
Sbjct: 180 KWTAPEAAL---YGRFTIKSDVWSFGILLTELTTKGRVPYPG---MVN-----------R 222
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
++D V C E + + +C +P RP+FE
Sbjct: 223 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 117/286 (40%), Gaps = 44/286 (15%)
Query: 448 MGEGSRGKLYKGRLE-NGTYVAIRSLTF-----LKKYSIQNLKVRLDFLSKLQHPHLVSL 501
+G G+ G+++ GRL + T VA++S LK +Q ++ L + HP++V L
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARI----LKQYSHPNIVRL 177
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
+G C + +++V E + G + L L+ L ++ A +
Sbjct: 178 IGVC--------TQKQPIYIVMELVQGGDFLTFLRTEGAR--LRVKTLLQMVGDAAAGME 227
Query: 562 FLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
+L S L N L+ E + K+SD+G+S EE + + A G + +
Sbjct: 228 YLESKC---CIHRDLAARNCLVTEKNVLKISDFGMS--REEADGVXAASGGLRQ----VP 278
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDG 681
+ T+ E ++ R E DV++FG +L E+ + + + +Q
Sbjct: 279 VKWTAPE----ALNYGRYSSESDVWSFGILLWETF----------SLGASPYPNLSNQQ- 323
Query: 682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
R V+ C + V + +C EP RPSF + L
Sbjct: 324 TREFVEKGGRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQEL 369
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 124/295 (42%), Gaps = 54/295 (18%)
Query: 448 MGEGSRGKLYKGRLEN------GTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
+GEG+ GK++ N VA+++L + ++ + L+ LQH H+V
Sbjct: 21 LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKF 80
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAH------LSENCPENVLKWSDRLA 551
G C+E + + +V+EY+ +G RAH ++E P L S L
Sbjct: 81 YGVCVEG--------DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLH 132
Query: 552 ILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKG 610
I +A + +L S F +R L T N L+ E+ + K+ D+G+S + + G
Sbjct: 133 IAQQIAAGMVYLASQ----HFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGG 188
Query: 611 EGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL 670
+ L I E+++ ++ E DV++ G +L E GK + L
Sbjct: 189 ------HTMLPIRWMPPESIM----YRKFTTESDVWSLGVVLWEIF----TYGKQPWYQL 234
Query: 671 --NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
NE+ +Q R + P TC QE +++ C EP R + + +
Sbjct: 235 SNNEVIECITQG--RVLQRP---RTCPQEVYELMLG----CWQREPHMRKNIKGI 280
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 120/281 (42%), Gaps = 50/281 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
+G+G G+++ G T VAI++L T + +Q +V + KL+H LV L
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQV----MKKLRHEKLVQLYAV 81
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
E +++V EY+ G L + + RL L+ +A +
Sbjct: 82 VSE---------EPIYIVTEYMSKGCLLDFLKGEMGKYL-----RLPQLVDMAAQIASGM 127
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFIC 623
+ V ++ +R L NIL+ E+ + K++D+G++ ++E++E AR G F
Sbjct: 128 AYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--------TARQGAKFPI 179
Query: 624 RTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR 683
+ +A + R ++ DV++FG +L E +T KG + R
Sbjct: 180 KWTAPEAAL---YGRFTIKSDVWSFGILLTE------LTTKGRVPYPGMV--------NR 222
Query: 684 RIVDPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
++D V C E + + +C +P RP+FE
Sbjct: 223 EVLDQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 263
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 116/278 (41%), Gaps = 44/278 (15%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G+G G+++ G T VAI++L S + + KL+H LV L E
Sbjct: 193 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGNMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 251
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
+++V EY+ GS L + + RL L+ +A + + V
Sbjct: 252 ---------EPIYIVTEYMSKGSLLDFLKGEMGKYL-----RLPQLVDMAAQIASGMAYV 297
Query: 568 ISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTS 626
++ +R L NIL+ E+ + K++D+G+ ++E++E AR G F + +
Sbjct: 298 ERMNYVHRDLRAANILVGENLVCKVADFGLGRLIEDNEY--------TARQGAKFPIKWT 349
Query: 627 AENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIV 686
A + R ++ DV++FG +L E +T KG + R ++
Sbjct: 350 APEAAL---YGRFTIKSDVWSFGILLTE------LTTKGRVPYPGMV--------NREVL 392
Query: 687 DPV---VLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
D V C E + + +C +P RP+FE
Sbjct: 393 DQVERGYRMPCPPECPESLHDLMCQCWRKDPEERPTFE 430
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 117/285 (41%), Gaps = 44/285 (15%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G GS G +YKG+ V + ++T +Q K + L K +H +++ +G+
Sbjct: 20 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 76
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
S ++ +V ++ S HL + E + + I A+ + +LH+
Sbjct: 77 ------STKPQLAIVTQWCEGSSLYHHL--HASETKFEMKKLIDIARQTARGMDYLHAKS 128
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
I L +NNI L E K+ D+G++ + + + + L++ A
Sbjct: 129 I---IHRDLKSNNIFLHEDNTVKIGDFGLATV---KSRWSGSHQFEQLSGSILWM----A 178
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVD 687
V+ + D + DVY FG +L E + G + + + + R +I++
Sbjct: 179 PEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQL--------------PYSNINNRDQIIE 224
Query: 688 PVVLTTCSQESLSIVVS--------ITNKCICPEPSSRPSFEDVL 724
V + S + LS V S + +C+ + RPSF +L
Sbjct: 225 MVGRGSLSPD-LSKVRSNCPKRMKRLMAECLKKKRDERPSFPRIL 268
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 117/286 (40%), Gaps = 44/286 (15%)
Query: 448 MGEGSRGKLYKGRLE-NGTYVAIRSLTF-----LKKYSIQNLKVRLDFLSKLQHPHLVSL 501
+G G+ G+++ GRL + T VA++S LK +Q ++ L + HP++V L
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARI----LKQYSHPNIVRL 177
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
+G C + +++V E + G + L L+ L ++ A +
Sbjct: 178 IGVC--------TQKQPIYIVMELVQGGDFLTFLRTEGAR--LRVKTLLQMVGDAAAGME 227
Query: 562 FLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
+L S L N L+ E + K+SD+G+S EE + + A G + +
Sbjct: 228 YLESKC---CIHRDLAARNCLVTEKNVLKISDFGMS--REEADGVYAASGGLRQ----VP 278
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDG 681
+ T+ E ++ R E DV++FG +L E+ + + + +Q
Sbjct: 279 VKWTAPE----ALNYGRYSSESDVWSFGILLWETF----------SLGASPYPNLSNQQ- 323
Query: 682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
R V+ C + V + +C EP RPSF + L
Sbjct: 324 TREFVEKGGRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQEL 369
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 84/199 (42%), Gaps = 33/199 (16%)
Query: 110 LPDK-IHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTNFFDDNVPDWWDSLSN 167
LP K HRL+ L LL ++ N L +P+GI L L+TL + N +D L N
Sbjct: 52 LPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN 110
Query: 168 LTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD--MSALTSLHVLDLRENKL 225
L L L NQLK P + LT +++ NEL LP LTSL L L N+L
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQL 169
Query: 226 DSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNIS 285
+P+G F +L +L+ L L N L +P SL +
Sbjct: 170 KR----VPEG-----------------AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208
Query: 286 YLHLASNMLSGTLPKDLSC 304
L L N P D +C
Sbjct: 209 MLQLQEN------PWDCTC 221
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Query: 171 LSLKSNQLKGQFPSSICRIATLTDIAMSNNEL----SGKLPDMSALTSLHVLDLRENKLD 226
L L+SN+L + R+ L + +++N+L +G ++ L +L V D + L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 227 SGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISY 286
G+ L + L RN P+ F L +L +L L +N+L +P V L ++
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161
Query: 287 LHLASNML 294
L L +N L
Sbjct: 162 LRLYNNQL 169
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 102/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
L +G+G+ G + R + G VA++ L + +++ + ++ L LQH ++V
Sbjct: 16 LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 75
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
G C +G ++ + L+ EY+P GS R +L ++ +L+++ ++ +
Sbjct: 76 KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 129
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
++H + L T NIL++ K+ D+G++ ++ +E+ K++ GE
Sbjct: 130 YLGTKRYIHRN---------LATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGES 180
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
P F + + E+ V DV++FG +L E
Sbjct: 181 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 210
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 124/308 (40%), Gaps = 68/308 (22%)
Query: 448 MGEGSRGKLYK-------GRLENGTYVAIRSLTFLKKYS-IQNLKVRLDFLSKLQHPHLV 499
+GEG GK+ K GR T VA++ L S +++L + L ++ HPH++
Sbjct: 31 LGEGEFGKVVKATAFHLKGR-AGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVI 89
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE---------------------N 538
L G C + G + L+ EY GS R L E +
Sbjct: 90 KLYGACSQDGP--------LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDH 141
Query: 539 CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
E L D ++ +++ + +L S +R L NIL+ E R K+SD+G+S
Sbjct: 142 PDERALTMGDLISFAWQISQGMQYLAEM----SLVHRDLAARNILVAEGRKMKISDFGLS 197
Query: 598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE--S 655
+ E + + +G R ++ S + + + DV++FG +L E +
Sbjct: 198 RDVYEEDSXVKRSQG---RIPVKWMAIESLFDHIYTT-------QSDVWSFGVLLWEIVT 247
Query: 656 LVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPS 715
L G G L N + + R+ P CS+E +++ +C EP
Sbjct: 248 LGGNPYPGIPPERLFNLLKT------GHRMERP---DNCSEEMYRLML----QCWKQEPD 294
Query: 716 SRPSFEDV 723
RP F D+
Sbjct: 295 KRPVFADI 302
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 129/309 (41%), Gaps = 59/309 (19%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQN----LKVRLDFLSKL-Q 494
N+ +GEG+ G++ K R++ ++ +K+Y+ ++ L+ L KL
Sbjct: 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 84
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE-------------NCPE 541
HP++++LLG C G ++L EY P+G+ L + N
Sbjct: 85 HPNIINLLGACEHRGY--------LYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA 136
Query: 542 NVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIM 600
+ L L VA+ + +L F +R L NIL+ E+ +AK++D+G+S
Sbjct: 137 STLSSQQLLHFAADVARGMDYLSQK----QFIHRDLAARNILVGENYVAKIADFGLSRGQ 192
Query: 601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE--SLVG 658
E + K G L + + E++ V + DV+++G +L E SL G
Sbjct: 193 EVY---------VKKTMGRLPVRWMAIESLNYSVYTTNS----DVWSYGVLLWEIVSLGG 239
Query: 659 PIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP 718
G A L ++ R+ P+ C E V + +C +P RP
Sbjct: 240 TPYCGMTCAELYEKLPQ------GYRLEKPL---NCDDE----VYDLMRQCWREKPYERP 286
Query: 719 SFEDVLWNL 727
SF +L +L
Sbjct: 287 SFAQILVSL 295
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 122/307 (39%), Gaps = 66/307 (21%)
Query: 448 MGEGSRGKLYK-------GRLENGTYVAIRSLTFLKKYS-IQNLKVRLDFLSKLQHPHLV 499
+GEG GK+ K GR T VA++ L S +++L + L ++ HPH++
Sbjct: 31 LGEGEFGKVVKATAFHLKGR-AGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVI 89
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE---------------------N 538
L G C + G + L+ EY GS R L E +
Sbjct: 90 KLYGACSQDGP--------LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDH 141
Query: 539 CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI 598
E L D ++ +++ + +L + L NIL+ E R K+SD+G+S
Sbjct: 142 PDERALTMGDLISFAWQISQGMQYLAEMKL---VHRDLAARNILVAEGRKMKISDFGLSR 198
Query: 599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE--SL 656
+ E + + +G R ++ S + + + DV++FG +L E +L
Sbjct: 199 DVYEEDSXVKRSQG---RIPVKWMAIESLFDHIYTT-------QSDVWSFGVLLWEIVTL 248
Query: 657 VGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSS 716
G G L N + + R+ P CS+E +++ +C EP
Sbjct: 249 GGNPYPGIPPERLFNLLKT------GHRMERP---DNCSEEMYRLML----QCWKQEPDK 295
Query: 717 RPSFEDV 723
RP F D+
Sbjct: 296 RPVFADI 302
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 129/309 (41%), Gaps = 59/309 (19%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQN----LKVRLDFLSKL-Q 494
N+ +GEG+ G++ K R++ ++ +K+Y+ ++ L+ L KL
Sbjct: 15 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 74
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE-------------NCPE 541
HP++++LLG C G ++L EY P+G+ L + N
Sbjct: 75 HPNIINLLGACEHRGY--------LYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA 126
Query: 542 NVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIM 600
+ L L VA+ + +L F +R L NIL+ E+ +AK++D+G+S
Sbjct: 127 STLSSQQLLHFAADVARGMDYLSQK----QFIHRDLAARNILVGENYVAKIADFGLSRGQ 182
Query: 601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE--SLVG 658
E + K G L + + E++ V + DV+++G +L E SL G
Sbjct: 183 EVY---------VKKTMGRLPVRWMAIESLNYSVYTTNS----DVWSYGVLLWEIVSLGG 229
Query: 659 PIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP 718
G A L ++ R+ P+ C E V + +C +P RP
Sbjct: 230 TPYCGMTCAELYEKLPQ------GYRLEKPL---NCDDE----VYDLMRQCWREKPYERP 276
Query: 719 SFEDVLWNL 727
SF +L +L
Sbjct: 277 SFAQILVSL 285
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
L +G+G+ G + R + G VA++ L + +++ + ++ L LQH ++V
Sbjct: 46 LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 105
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
G C +G ++ + L+ EY+P GS R +L ++ +L+++ ++ +
Sbjct: 106 KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 159
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
++H L T NIL++ K+ D+G++ ++ +E K++ GE
Sbjct: 160 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 210
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
P F + + E+ V DV++FG +L E
Sbjct: 211 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 240
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 122/307 (39%), Gaps = 66/307 (21%)
Query: 448 MGEGSRGKLYK-------GRLENGTYVAIRSLTFLKKYS-IQNLKVRLDFLSKLQHPHLV 499
+GEG GK+ K GR T VA++ L S +++L + L ++ HPH++
Sbjct: 31 LGEGEFGKVVKATAFHLKGR-AGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVI 89
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE---------------------N 538
L G C + G + L+ EY GS R L E +
Sbjct: 90 KLYGACSQDGP--------LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDH 141
Query: 539 CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI 598
E L D ++ +++ + +L + L NIL+ E R K+SD+G+S
Sbjct: 142 PDERALTMGDLISFAWQISQGMQYLAEMKL---VHRDLAARNILVAEGRKMKISDFGLSR 198
Query: 599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE--SL 656
+ E + + +G R ++ S + + + DV++FG +L E +L
Sbjct: 199 DVYEEDSYVKRSQG---RIPVKWMAIESLFDHIYTT-------QSDVWSFGVLLWEIVTL 248
Query: 657 VGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSS 716
G G L N + + R+ P CS+E +++ +C EP
Sbjct: 249 GGNPYPGIPPERLFNLLKT------GHRMERP---DNCSEEMYRLML----QCWKQEPDK 295
Query: 717 RPSFEDV 723
RP F D+
Sbjct: 296 RPVFADI 302
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 99/222 (44%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
L +G+G+ G + R + G VA++ L + +++ + ++ L LQH ++V
Sbjct: 18 LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 77
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
G C +G ++ + L+ EY+P GS R +L + +L+++ ++ +
Sbjct: 78 KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQAHAERIDHIKLLQYTSQICKGME 131
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
++H L T NIL++ K+ D+G++ ++ +E K++ GE
Sbjct: 132 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 182
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
P F + + E+ V DV++FG +L E
Sbjct: 183 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 212
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 129/309 (41%), Gaps = 59/309 (19%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQN----LKVRLDFLSKL-Q 494
N+ +GEG+ G++ K R++ ++ +K+Y+ ++ L+ L KL
Sbjct: 22 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 81
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE-------------NCPE 541
HP++++LLG C G ++L EY P+G+ L + N
Sbjct: 82 HPNIINLLGACEHRGY--------LYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA 133
Query: 542 NVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIM 600
+ L L VA+ + +L F +R L NIL+ E+ +AK++D+G+S
Sbjct: 134 STLSSQQLLHFAADVARGMDYLSQK----QFIHRNLAARNILVGENYVAKIADFGLSRGQ 189
Query: 601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE--SLVG 658
E + K G L + + E++ V + DV+++G +L E SL G
Sbjct: 190 EVY---------VKKTMGRLPVRWMAIESLNYSVYTTNS----DVWSYGVLLWEIVSLGG 236
Query: 659 PIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRP 718
G A L ++ R+ P+ C E V + +C +P RP
Sbjct: 237 TPYCGMTCAELYEKLPQ------GYRLEKPL---NCDDE----VYDLMRQCWREKPYERP 283
Query: 719 SFEDVLWNL 727
SF +L +L
Sbjct: 284 SFAQILVSL 292
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
L +G+G+ G + R + G VA++ L + +++ + ++ L LQH ++V
Sbjct: 22 LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 81
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
G C +G ++ + L+ EY+P GS R +L ++ +L+++ ++ +
Sbjct: 82 KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 135
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
++H L T NIL++ K+ D+G++ ++ +E K++ GE
Sbjct: 136 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 186
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
P F + + E+ V DV++FG +L E
Sbjct: 187 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 216
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
L +G+G+ G + R + G VA++ L + +++ + ++ L LQH ++V
Sbjct: 18 LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 77
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
G C +G ++ + L+ EY+P GS R +L ++ +L+++ ++ +
Sbjct: 78 KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 131
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
++H L T NIL++ K+ D+G++ ++ +E K++ GE
Sbjct: 132 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 182
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
P F + + E+ V DV++FG +L E
Sbjct: 183 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 212
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
L +G+G+ G + R + G VA++ L + +++ + ++ L LQH ++V
Sbjct: 20 LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 79
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
G C +G ++ + L+ EY+P GS R +L ++ +L+++ ++ +
Sbjct: 80 KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 133
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
++H L T NIL++ K+ D+G++ ++ +E K++ GE
Sbjct: 134 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 184
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
P F + + E+ V DV++FG +L E
Sbjct: 185 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 214
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
L +G+G+ G + R + G VA++ L + +++ + ++ L LQH ++V
Sbjct: 15 LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 74
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
G C +G ++ + L+ EY+P GS R +L ++ +L+++ ++ +
Sbjct: 75 KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 128
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
++H L T NIL++ K+ D+G++ ++ +E K++ GE
Sbjct: 129 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 179
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
P F + + E+ V DV++FG +L E
Sbjct: 180 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 209
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
L +G+G+ G + R + G VA++ L + +++ + ++ L LQH ++V
Sbjct: 21 LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 80
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
G C +G ++ + L+ EY+P GS R +L ++ +L+++ ++ +
Sbjct: 81 KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 134
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
++H L T NIL++ K+ D+G++ ++ +E K++ GE
Sbjct: 135 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 185
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
P F + + E+ V DV++FG +L E
Sbjct: 186 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 215
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
L +G+G+ G + R + G VA++ L + +++ + ++ L LQH ++V
Sbjct: 19 LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 78
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
G C +G ++ + L+ EY+P GS R +L ++ +L+++ ++ +
Sbjct: 79 KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 132
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
++H L T NIL++ K+ D+G++ ++ +E K++ GE
Sbjct: 133 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 183
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
P F + + E+ V DV++FG +L E
Sbjct: 184 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 213
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
L +G+G+ G + R + G VA++ L + +++ + ++ L LQH ++V
Sbjct: 14 LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 73
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
G C +G ++ + L+ EY+P GS R +L ++ +L+++ ++ +
Sbjct: 74 KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 127
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
++H L T NIL++ K+ D+G++ ++ +E K++ GE
Sbjct: 128 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 178
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
P F + + E+ V DV++FG +L E
Sbjct: 179 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 208
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
L +G+G+ G + R + G VA++ L + +++ + ++ L LQH ++V
Sbjct: 33 LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 92
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
G C +G ++ + L+ EY+P GS R +L ++ +L+++ ++ +
Sbjct: 93 KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 146
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
++H L T NIL++ K+ D+G++ ++ +E K++ GE
Sbjct: 147 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 197
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
P F + + E+ V DV++FG +L E
Sbjct: 198 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 227
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
L +G+G+ G + R + G VA++ L + +++ + ++ L LQH ++V
Sbjct: 13 LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 72
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
G C +G ++ + L+ EY+P GS R +L ++ +L+++ ++ +
Sbjct: 73 KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 126
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
++H L T NIL++ K+ D+G++ ++ +E K++ GE
Sbjct: 127 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 177
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
P F + + E+ V DV++FG +L E
Sbjct: 178 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 207
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 115/282 (40%), Gaps = 40/282 (14%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G G G ++ G N VAI+++ S ++ + + KL HP LV L G C+E
Sbjct: 13 IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 71
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
+ LV+E++ +G +L + L + + V + + +L +
Sbjct: 72 QAP--------ICLVFEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEEAC 121
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
+ L N L+ E+++ K+SD+G++ + + + + G ++ S
Sbjct: 122 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWA-------SP 171
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR--RI 685
E V R + DV++FG ++ E V +G+ N S +D R+
Sbjct: 172 E----VFSFSRYSSKSDVWSFGVLMWE------VFSEGKIPYENRSNSEVVEDISTGFRL 221
Query: 686 VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
P + +T V I N C P RP+F +L L
Sbjct: 222 YKPRLAST-------HVYQIMNHCWKERPEDRPAFSRLLRQL 256
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
L +G+G+ G + R + G VA++ L + +++ + ++ L LQH ++V
Sbjct: 33 LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 92
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
G C +G ++ + L+ EY+P GS R +L ++ +L+++ ++ +
Sbjct: 93 KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 146
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
++H L T NIL++ K+ D+G++ ++ +E K++ GE
Sbjct: 147 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 197
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
P F + + E+ V DV++FG +L E
Sbjct: 198 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 227
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
L +G+G+ G + R + G VA++ L + +++ + ++ L LQH ++V
Sbjct: 15 LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 74
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
G C +G ++ + L+ EY+P GS R +L ++ +L+++ ++ +
Sbjct: 75 KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 128
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
++H L T NIL++ K+ D+G++ ++ +E K++ GE
Sbjct: 129 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 179
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
P F + + E+ V DV++FG +L E
Sbjct: 180 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 209
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 115/282 (40%), Gaps = 40/282 (14%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G G G ++ G N VAI+++ S ++ + + KL HP LV L G C+E
Sbjct: 18 IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 76
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
+ LV+E++ +G +L + L + + V + + +L +
Sbjct: 77 QAP--------ICLVFEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEEAC 126
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
+ L N L+ E+++ K+SD+G++ + + + + G ++ S
Sbjct: 127 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWA-------SP 176
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR--RI 685
E V R + DV++FG ++ E V +G+ N S +D R+
Sbjct: 177 E----VFSFSRYSSKSDVWSFGVLMWE------VFSEGKIPYENRSNSEVVEDISTGFRL 226
Query: 686 VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
P + +T V I N C P RP+F +L L
Sbjct: 227 YKPRLAST-------HVYQIMNHCWRERPEDRPAFSRLLRQL 261
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 115/282 (40%), Gaps = 40/282 (14%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G G G ++ G N VAI+++ S ++ + + KL HP LV L G C+E
Sbjct: 15 IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 73
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
+ LV+E++ +G +L + L + + V + + +L +
Sbjct: 74 QAP--------ICLVFEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEEAC 123
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
+ L N L+ E+++ K+SD+G++ + + + + G ++ S
Sbjct: 124 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWA-------SP 173
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR--RI 685
E V R + DV++FG ++ E V +G+ N S +D R+
Sbjct: 174 E----VFSFSRYSSKSDVWSFGVLMWE------VFSEGKIPYENRSNSEVVEDISTGFRL 223
Query: 686 VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
P + +T V I N C P RP+F +L L
Sbjct: 224 YKPRLAST-------HVYQIMNHCWKERPEDRPAFSRLLRQL 258
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 114/282 (40%), Gaps = 40/282 (14%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G G G ++ G N VAI+++ S + + + KL HP LV L G C+E
Sbjct: 35 IGSGQFGLVHLGYWLNKDKVAIKTIK-EGSMSEDDFIEEAEVMMKLSHPKLVQLYGVCLE 93
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
+ LV+E++ +G +L + L + + V + + +L +
Sbjct: 94 QAP--------ICLVFEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEEAC 143
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
+ L N L+ E+++ K+SD+G++ + + + + G ++ S
Sbjct: 144 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWA-------SP 193
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR--RI 685
E V R + DV++FG ++ E V +G+ N S +D R+
Sbjct: 194 E----VFSFSRYSSKSDVWSFGVLMWE------VFSEGKIPYENRSNSEVVEDISTGFRL 243
Query: 686 VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
P + +T V I N C P RP+F +L L
Sbjct: 244 YKPRLAST-------HVYQIMNHCWKERPEDRPAFSRLLRQL 278
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
L +G+G+ G + R + G VA++ L + +++ + ++ L LQH ++V
Sbjct: 15 LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 74
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
G C +G ++ + L+ EY+P GS R +L ++ +L+++ ++ +
Sbjct: 75 KYKGVCYSAGRRN------LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGME 128
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
++H L T NIL++ K+ D+G++ ++ +E K++ GE
Sbjct: 129 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGES 179
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
P F + + E+ V DV++FG +L E
Sbjct: 180 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 209
>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a
pdb|4H1M|A Chain A, Crystal Structure Of Pyk2 With The Indole 10c
Length = 293
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 116/285 (40%), Gaps = 41/285 (14%)
Query: 448 MGEGSRGKLYKGRLEN--GTYVAIRSLTFLKKYSIQNLKVRLD---FLSKLQHPHLVSLL 502
+GEG G++Y+G N G + + T K ++ N + + + L HPH+V L+
Sbjct: 32 LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI 91
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G E + +++ E P G +L N +N LK + + + KA+ +
Sbjct: 92 GIIEEEPT---------WIIMELYPYGELGHYLERN--KNSLKVLTLVLYSLQICKAMAY 140
Query: 563 LHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFI 622
L S + NIL+ KL D+G+S +E+ + KA L I
Sbjct: 141 LESI---NCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYY-------KASVTRLPI 190
Query: 623 CRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGR 682
S E+ ++ +R DV+ F + E L GK F L G +
Sbjct: 191 KWMSPES----INFRRFTTASDVWMFAVCMWEIL----SFGKQPFFWLENKDVIGVLEKG 242
Query: 683 RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
R+ P C ++ ++ +C +PS RP F +++ +L
Sbjct: 243 DRLPKP---DLCP----PVLYTLMTRCWDYDPSDRPRFTELVCSL 280
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 115/282 (40%), Gaps = 40/282 (14%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G G G ++ G N VAI+++ S ++ + + KL HP LV L G C+E
Sbjct: 15 IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 73
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
+ LV+E++ +G +L + L + + V + + +L +
Sbjct: 74 QAP--------ICLVFEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEEAS 123
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
+ L N L+ E+++ K+SD+G++ + + + + G ++ S
Sbjct: 124 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWA-------SP 173
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR--RI 685
E V R + DV++FG ++ E V +G+ N S +D R+
Sbjct: 174 E----VFSFSRYSSKSDVWSFGVLMWE------VFSEGKIPYENRSNSEVVEDISTGFRL 223
Query: 686 VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
P + +T V I N C P RP+F +L L
Sbjct: 224 YKPRLAST-------HVYQIMNHCWKERPEDRPAFSRLLRQL 258
>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine
Kinase 2 Beta (ptk2b)
Length = 281
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 116/285 (40%), Gaps = 41/285 (14%)
Query: 448 MGEGSRGKLYKGRLEN--GTYVAIRSLTFLKKYSIQNLKVRLD---FLSKLQHPHLVSLL 502
+GEG G++Y+G N G + + T K ++ N + + + L HPH+V L+
Sbjct: 20 LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI 79
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G E + +++ E P G +L N +N LK + + + KA+ +
Sbjct: 80 GIIEEEPT---------WIIMELYPYGELGHYLERN--KNSLKVLTLVLYSLQICKAMAY 128
Query: 563 LHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFI 622
L S + NIL+ KL D+G+S +E+ + KA L I
Sbjct: 129 LESI---NCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYY-------KASVTRLPI 178
Query: 623 CRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGR 682
S E+ ++ +R DV+ F + E L GK F L G +
Sbjct: 179 KWMSPES----INFRRFTTASDVWMFAVCMWEIL----SFGKQPFFWLENKDVIGVLEKG 230
Query: 683 RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
R+ P C ++ ++ +C +PS RP F +++ +L
Sbjct: 231 DRLPKP---DLCP----PVLYTLMTRCWDYDPSDRPRFTELVCSL 268
>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
pdb|4EBV|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
Length = 304
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 120/282 (42%), Gaps = 43/282 (15%)
Query: 448 MGEGSRGKLYKGRL---EN-GTYVAIRSLTFLKKYSIQNLKVRLDF-LSKLQHPHLVSLL 502
+GEG G +++G EN VAI++ S++ ++ + + HPH+V L+
Sbjct: 46 IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 105
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G E N V+++ E G R+ L V K+S LA LI A +
Sbjct: 106 GVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLILYAYQLST 150
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
+ + S F +R + N+L+ + KL D+G+S ME+ KA G L
Sbjct: 151 ALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-------KASKGKLP 203
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDG 681
I + E+ ++ +R DV+ FG + E L+ + +G + N ++G
Sbjct: 204 IKWMAPES----INFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIGRIENG 256
Query: 682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
R + P T + S+ KC +PS RP F ++
Sbjct: 257 ERLPMPPNCPPT--------LYSLMTKCWAYDPSRRPRFTEL 290
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 100/222 (45%), Gaps = 39/222 (17%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
L +G+G+ G + R + G VA++ L + +++ + ++ L LQH ++V
Sbjct: 18 LRQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 77
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE----NVLKWSDRLAILIG 555
G C +G ++ + L+ E++P GS R +L ++ +L+++ ++ +
Sbjct: 78 KYKGVCYSAGRRN------LKLIMEFLPYGSLREYLQKHKERIDHIKLLQYTSQICKGME 131
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEG 612
++H L T NIL++ K+ D+G++ ++ +E K++ GE
Sbjct: 132 YLGTKRYIHRD---------LATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGES 182
Query: 613 PKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
P F + + E+ V DV++FG +L E
Sbjct: 183 PI----FWYAPESLTESKFSVA--------SDVWSFGVVLYE 212
>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The
Kinase Domain Of Focal Adhesion Kinase With A
Phosphorylated Activation Loop
Length = 276
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 122/287 (42%), Gaps = 53/287 (18%)
Query: 448 MGEGSRGKLYKGRL---EN-GTYVAIRSL------TFLKKYSIQNLKVRLDFLSKLQHPH 497
+GEG G +++G EN VAI++ + +K+ + L +R + HPH
Sbjct: 18 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMR-----QFDHPH 72
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
+V L+G E N V+++ E G R+ L V K+S LA LI A
Sbjct: 73 IVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKFSLDLASLILYA 117
Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
+ + + S F +R + N+L+ + KL D+G+S ME+ KA
Sbjct: 118 YQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTXX-------KAS 170
Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF 676
G L I + E+ ++ +R DV+ FG + E L+ + +G + N
Sbjct: 171 KGKLPIKWMAPES----INFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIG 223
Query: 677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
++G R + P T + S+ KC +PS RP F ++
Sbjct: 224 RIENGERLPMPPNCPPT--------LYSLMTKCWAYDPSRRPRFTEL 262
>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak)
pdb|4I4F|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With An Allosteric Binding Pyrazolobenzothiazine
Compound
Length = 281
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 120/282 (42%), Gaps = 43/282 (15%)
Query: 448 MGEGSRGKLYKGRL---EN-GTYVAIRSLTFLKKYSIQNLKVRLDF-LSKLQHPHLVSLL 502
+GEG G +++G EN VAI++ S++ ++ + + HPH+V L+
Sbjct: 23 IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 82
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G E N V+++ E G R+ L V K+S LA LI A +
Sbjct: 83 GVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLILYAYQLST 127
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
+ + S F +R + N+L+ + KL D+G+S ME+ KA G L
Sbjct: 128 ALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-------KASKGKLP 180
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDG 681
I + E+ ++ +R DV+ FG + E L+ + +G + N ++G
Sbjct: 181 IKWMAPES----INFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIGRIENG 233
Query: 682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
R + P T + S+ KC +PS RP F ++
Sbjct: 234 ERLPMPPNCPPT--------LYSLMTKCWAYDPSRRPRFTEL 267
>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine
Kinase
pdb|3FZP|A Chain A, Crystal Structure Of Pyk2 Complexed With Atpgs
pdb|3FZR|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-431396
pdb|3FZS|A Chain A, Crystal Structure Of Pyk2 Complexed With Birb796
pdb|3FZT|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-4618433
pdb|3H3C|A Chain A, Crystal Structure Of Pyk2 In Complex With Sulfoximine-
Substituted Trifluoromethylpyrimidine Analog
pdb|3ET7|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-2318841
Length = 277
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 116/285 (40%), Gaps = 41/285 (14%)
Query: 448 MGEGSRGKLYKGRLEN--GTYVAIRSLTFLKKYSIQNLKVRLD---FLSKLQHPHLVSLL 502
+GEG G++Y+G N G + + T K ++ N + + + L HPH+V L+
Sbjct: 16 LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI 75
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G E + +++ E P G +L N +N LK + + + KA+ +
Sbjct: 76 GIIEEEPT---------WIIMELYPYGELGHYLERN--KNSLKVLTLVLYSLQICKAMAY 124
Query: 563 LHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFI 622
L S + NIL+ KL D+G+S +E+ + KA L I
Sbjct: 125 LESI---NCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYY-------KASVTRLPI 174
Query: 623 CRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGR 682
S E+ ++ +R DV+ F + E L GK F L G +
Sbjct: 175 KWMSPES----INFRRFTTASDVWMFAVCMWEIL----SFGKQPFFWLENKDVIGVLEKG 226
Query: 683 RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
R+ P C ++ ++ +C +PS RP F +++ +L
Sbjct: 227 DRLPKP---DLCP----PVLYTLMTRCWDYDPSDRPRFTELVCSL 264
>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
pdb|3PXK|B Chain B, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
Length = 282
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 120/282 (42%), Gaps = 43/282 (15%)
Query: 448 MGEGSRGKLYKGRL---EN-GTYVAIRSLTFLKKYSIQNLKVRLDF-LSKLQHPHLVSLL 502
+GEG G +++G EN VAI++ S++ ++ + + HPH+V L+
Sbjct: 21 IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 80
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G E N V+++ E G R+ L V K+S LA LI A +
Sbjct: 81 GVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLILYAYQLST 125
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
+ + S F +R + N+L+ + KL D+G+S ME+ KA G L
Sbjct: 126 ALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-------KASKGKLP 178
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDG 681
I + E+ ++ +R DV+ FG + E L+ + +G + N ++G
Sbjct: 179 IKWMAPES----INFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIGRIENG 231
Query: 682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
R + P T + S+ KC +PS RP F ++
Sbjct: 232 ERLPMPPNCPPT--------LYSLMTKCWAYDPSRRPRFTEL 265
>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 120/282 (42%), Gaps = 43/282 (15%)
Query: 448 MGEGSRGKLYKGRL---EN-GTYVAIRSLTFLKKYSIQNLKVRLDF-LSKLQHPHLVSLL 502
+GEG G +++G EN VAI++ S++ ++ + + HPH+V L+
Sbjct: 18 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 77
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G E N V+++ E G R+ L V K+S LA LI A +
Sbjct: 78 GVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLILYAYQLST 122
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
+ + S F +R + N+L+ + KL D+G+S ME+ KA G L
Sbjct: 123 ALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-------KASKGKLP 175
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDG 681
I + E+ ++ +R DV+ FG + E L+ + +G + N ++G
Sbjct: 176 IKWMAPES----INFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIGRIENG 228
Query: 682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
R + P T + S+ KC +PS RP F ++
Sbjct: 229 ERLPMPPNCPPT--------LYSLMTKCWAYDPSRRPRFTEL 262
>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A
Methanesulfonamide Diaminopyrimidine Inhibitor
Length = 276
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 120/282 (42%), Gaps = 43/282 (15%)
Query: 448 MGEGSRGKLYKGRL---EN-GTYVAIRSLTFLKKYSIQNLKVRLDF-LSKLQHPHLVSLL 502
+GEG G +++G EN VAI++ S++ ++ + + HPH+V L+
Sbjct: 15 IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 74
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G E N V+++ E G R+ L V K+S LA LI A +
Sbjct: 75 GVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLILYAYQLST 119
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
+ + S F +R + N+L+ + KL D+G+S ME+ KA G L
Sbjct: 120 ALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-------KASKGKLP 172
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDG 681
I + E+ ++ +R DV+ FG + E L+ + +G + N ++G
Sbjct: 173 IKWMAPES----INFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIGRIENG 225
Query: 682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
R + P T + S+ KC +PS RP F ++
Sbjct: 226 ERLPMPPNCPPT--------LYSLMTKCWAYDPSRRPRFTEL 259
>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2ETM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2IJM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
pdb|2IJM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
Length = 281
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 120/282 (42%), Gaps = 43/282 (15%)
Query: 448 MGEGSRGKLYKGRL---EN-GTYVAIRSLTFLKKYSIQNLKVRLDF-LSKLQHPHLVSLL 502
+GEG G +++G EN VAI++ S++ ++ + + HPH+V L+
Sbjct: 20 IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 79
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G E N V+++ E G R+ L V K+S LA LI A +
Sbjct: 80 GVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLILYAYQLST 124
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
+ + S F +R + N+L+ + KL D+G+S ME+ KA G L
Sbjct: 125 ALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-------KASKGKLP 177
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDG 681
I + E+ ++ +R DV+ FG + E L+ + +G + N ++G
Sbjct: 178 IKWMAPES----INFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIGRIENG 230
Query: 682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
R + P T + S+ KC +PS RP F ++
Sbjct: 231 ERLPMPPNCPPT--------LYSLMTKCWAYDPSRRPRFTEL 264
>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And
Kinase Domains Of Focal Adhesion Kinase.
pdb|2JKQ|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 122/287 (42%), Gaps = 53/287 (18%)
Query: 448 MGEGSRGKLYKGRL---EN-GTYVAIRSL------TFLKKYSIQNLKVRLDFLSKLQHPH 497
+GEG G +++G EN VAI++ + +K+ + L +R + HPH
Sbjct: 18 IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMR-----QFDHPH 72
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
+V L+G E N V+++ E G R+ L V K+S LA LI A
Sbjct: 73 IVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKYSLDLASLILYA 117
Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
+ + + S F +R + N+L+ + KL D+G+S ME+ KA
Sbjct: 118 YQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-------KAS 170
Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF 676
G L I + E+ ++ +R DV+ FG + E L+ + +G + N
Sbjct: 171 KGKLPIKWMAPES----INFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIG 223
Query: 677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
++G R + P T + S+ KC +PS RP F ++
Sbjct: 224 RIENGERLPMPPNCPPT--------LYSLMTKCWAYDPSRRPRFTEL 262
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G GS G +YKG+ V + ++T +Q K + L K +H +++ +G+
Sbjct: 16 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 72
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
S ++ +V ++ S HL + E + + I A+ + +LH+
Sbjct: 73 ------STKPQLAIVTQWCEGSSLYHHL--HIIETKFEMIKLIDIARQTAQGMDYLHAKS 124
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
I L +NNI L E K+ D+G++ E + + + L++ A
Sbjct: 125 I---IHRDLKSNNIFLHEDLTVKIGDFGLAT---EKSRWSGSHQFEQLSGSILWM----A 174
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
V+ + D + DVY FG +L E + G +
Sbjct: 175 PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 207
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
+ +EL + D + +G G G++ GRL+ VAI++L Y+ K R
Sbjct: 26 FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 78
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
DFL + HP+++ L G +S V +V EY+ NGS + L ++
Sbjct: 79 RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDA 130
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ + + +L G+A + +L G L NIL++ + + K+SD+G+S ++
Sbjct: 131 QFTV--IQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVL 185
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
E+ P+A Y G + I TS E + ++ DV+++G +L E +
Sbjct: 186 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 232
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G GS G +YKG+ V + ++T +Q K + L K +H +++ +G+
Sbjct: 44 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 100
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
S ++ +V ++ S HL + E + + I A+ + +LH+
Sbjct: 101 ------STKPQLAIVTQWCEGSSLYHHL--HIIETKFEMIKLIDIARQTAQGMDYLHAKS 152
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
I L +NNI L E K+ D+G++ E + + + L++ A
Sbjct: 153 I---IHRDLKSNNIFLHEDLTVKIGDFGLAT---EKSRWSGSHQFEQLSGSILWM----A 202
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
V+ + D + DVY FG +L E + G +
Sbjct: 203 PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 235
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
+ +EL + D + +G G G++ GRL+ VAI++L Y+ K R
Sbjct: 9 FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 61
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
DFL + HP+++ L G +S V +V EY+ NGS + L ++
Sbjct: 62 RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDA 113
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ + + +L G+A + +L G L NIL++ + + K+SD+G+S ++
Sbjct: 114 QFTV--IQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVL 168
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
E+ P+A Y G + I TS E + ++ DV+++G +L E +
Sbjct: 169 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 215
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 131/294 (44%), Gaps = 61/294 (20%)
Query: 448 MGEGSRGKLYKGRLENGT-----YVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHP 496
+G G G++YKG L+ + VAI++L + K R+DFL + H
Sbjct: 52 IGAGEFGEVYKGMLKTSSGKKEVPVAIKTLK-----AGYTEKQRVDFLGEAGIMGQFSHH 106
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE-NVLKWSDRLAILIG 555
+++ L G S + ++ EY+ NG+ L E E +VL+ + +L G
Sbjct: 107 NIIRLEGVI--------SKYKPMMIITEYMENGALDKFLREKDGEFSVLQL---VGMLRG 155
Query: 556 VAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPK 614
+A + +L + ++ +R L NIL++ + + K+SD+G+S ++E+ P+
Sbjct: 156 IAAGMKYLANM----NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD---------PE 202
Query: 615 ARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLL 670
A Y G + I T+ E + ++ DV++FG ++ E + G+ + L
Sbjct: 203 ATYTTSGGKIPIRWTAPE----AISYRKFTSASDVWSFGIVMWEVM----TYGERPYWEL 254
Query: 671 NEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
+ + + R+ P+ + S + + +C E + RP F D++
Sbjct: 255 SNHEVMKAINDGFRLPTPM-------DCPSAIYQLMMQCWQQERARRPKFADIV 301
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G GS G +YKG+ V + ++T +Q K + L K +H +++ +G+
Sbjct: 36 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 92
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
S ++ +V ++ S HL + E + + I A+ + +LH+
Sbjct: 93 ------STKPQLAIVTQWCEGSSLYHHL--HIIETKFEMIKLIDIARQTAQGMDYLHAKS 144
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
I L +NNI L E K+ D+G++ E + + + L++ A
Sbjct: 145 I---IHRDLKSNNIFLHEDLTVKIGDFGLAT---EKSRWSGSHQFEQLSGSILWM----A 194
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
V+ + D + DVY FG +L E + G +
Sbjct: 195 PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 227
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 32/231 (13%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKGRLENGTYV-AIRSLTFLKKYSIQ-----NLKVRLDF 489
K + F+ L +G+GS GK++ + +G+ + ++ LKK +++ K+ D
Sbjct: 20 KADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDI 79
Query: 490 LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDR 549
L ++ HP +V L G K++L+ +++ G LS+ E + D
Sbjct: 80 LVEVNHPFIVKLHYAFQTEG--------KLYLILDFLRGGDLFTRLSK---EVMFTEEDV 128
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAK 609
L +A A+ LHS G L NILLDE KL+D+G+S +HEK
Sbjct: 129 KFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK---- 181
Query: 610 GEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
KA Y F C T VV+ + D ++FG ++ E L G +
Sbjct: 182 ----KA-YSF---CGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTL 224
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 114/282 (40%), Gaps = 40/282 (14%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G G G ++ G N VAI+++ S ++ + + KL HP LV L G C+E
Sbjct: 16 IGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 74
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
+ LV E++ +G +L + L + + V + + +L +
Sbjct: 75 QAP--------ICLVTEFMEHGCLSDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEEAC 124
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
+ L N L+ E+++ K+SD+G++ + + + + G ++ S
Sbjct: 125 V---IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWA-------SP 174
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRR--RI 685
E V R + DV++FG ++ E V +G+ N S +D R+
Sbjct: 175 E----VFSFSRYSSKSDVWSFGVLMWE------VFSEGKIPYENRSNSEVVEDISTGFRL 224
Query: 686 VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
P + +T V I N C P RP+F +L L
Sbjct: 225 YKPRLAST-------HVYQIMNHCWRERPEDRPAFSRLLRQL 259
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 32/231 (13%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKGRLENGTYV-AIRSLTFLKKYSIQ-----NLKVRLDF 489
K + F+ L +G+GS GK++ + +G+ + ++ LKK +++ K+ D
Sbjct: 21 KADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDI 80
Query: 490 LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDR 549
L ++ HP +V L G K++L+ +++ G LS+ E + D
Sbjct: 81 LVEVNHPFIVKLHYAFQTEG--------KLYLILDFLRGGDLFTRLSK---EVMFTEEDV 129
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAK 609
L +A A+ LHS G L NILLDE KL+D+G+S +HEK
Sbjct: 130 KFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK---- 182
Query: 610 GEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
KA Y F C T VV+ + D ++FG ++ E L G +
Sbjct: 183 ----KA-YSF---CGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTL 225
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 32/231 (13%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKGRLENGTYV-AIRSLTFLKKYSIQ-----NLKVRLDF 489
K + F+ L +G+GS GK++ + +G+ + ++ LKK +++ K+ D
Sbjct: 20 KADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDI 79
Query: 490 LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDR 549
L ++ HP +V L G K++L+ +++ G LS+ E + D
Sbjct: 80 LVEVNHPFIVKLHYAFQTEG--------KLYLILDFLRGGDLFTRLSK---EVMFTEEDV 128
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAK 609
L +A A+ LHS G L NILLDE KL+D+G+S +HEK
Sbjct: 129 KFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK---- 181
Query: 610 GEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
KA Y F C T VV+ + D ++FG ++ E L G +
Sbjct: 182 ----KA-YSF---CGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTL 224
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 114/275 (41%), Gaps = 38/275 (13%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G G G+++ G T VAI++L S ++ + KL+H LV L E
Sbjct: 17 LGNGQFGEVWMGTWNGNTKVAIKTLK-PGTMSPESFLEEAQIMKKLKHDKLVQLYAVVSE 75
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
+++V EY+ GS L + + +L L+ +A V + +
Sbjct: 76 E---------PIYIVTEYMNKGSLLDFLKDGEGRAL-----KLPNLVDMAAQVAAGMAYI 121
Query: 568 ISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTS 626
++ +R L + NIL+ I K++D+G++ ++E++E AR G F + +
Sbjct: 122 ERMNYIHRDLRSANILVGNGLICKIADFGLARLIEDNEX--------TARQGAKFPIKWT 173
Query: 627 AENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIV 686
A + R ++ DV++FG +L E + V G + N + G R
Sbjct: 174 APEAALY---GRFTIKSDVWSFGILLTELVTKGRVPYPG---MNNREVLEQVERGYR--- 224
Query: 687 DPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
C Q+ + + C +P RP+FE
Sbjct: 225 -----MPCPQDCPISLHELMIHCWKKDPEERPTFE 254
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G GS G +YKG+ V + ++T +Q K + L K +H +++ +G+
Sbjct: 21 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 77
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
S ++ +V ++ S HL + E + + I A+ + +LH+
Sbjct: 78 ------STKPQLAIVTQWCEGSSLYHHL--HIIETKFEMIKLIDIARQTAQGMDYLHAKS 129
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
I L +NNI L E K+ D+G++ + + + + L++ A
Sbjct: 130 I---IHRDLKSNNIFLHEDLTVKIGDFGLATV---KSRWSGSHQFEQLSGSILWM----A 179
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
V+ + D + DVY FG +L E + G +
Sbjct: 180 PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 212
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
+ +EL + D + +G G G++ GRL+ VAI++L Y+ K R
Sbjct: 38 FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 90
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
DFL + HP+++ L G +S V +V EY+ NGS + L ++
Sbjct: 91 RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDA 142
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ + + +L G+A + +L G L NIL++ + + K+SD+G+S ++
Sbjct: 143 QFTV--IQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVL 197
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
E+ P+A Y G + I TS E + ++ DV+++G +L E +
Sbjct: 198 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 244
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
+ +EL + D + +G G G++ GRL+ VAI++L Y+ K R
Sbjct: 38 FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 90
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
DFL + HP+++ L G +S V +V EY+ NGS + L ++
Sbjct: 91 RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDA 142
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ + + +L G+A + +L G L NIL++ + + K+SD+G+S ++
Sbjct: 143 QFTV--IQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVL 197
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
E+ P+A Y G + I TS E + ++ DV+++G +L E +
Sbjct: 198 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 244
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G GS G +YKG+ V + ++T +Q K + L K +H +++ +G+
Sbjct: 16 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 72
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
S ++ +V ++ S HL + E + + I A+ + +LH+
Sbjct: 73 ------STAPQLAIVTQWCEGSSLYHHL--HIIETKFEMIKLIDIARQTAQGMDYLHAKS 124
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
I L +NNI L E K+ D+G++ + + + + L++ A
Sbjct: 125 I---IHRDLKSNNIFLHEDLTVKIGDFGLATV---KSRWSGSHQFEQLSGSILWM----A 174
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
V+ + D + DVY FG +L E + G +
Sbjct: 175 PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 207
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G GS G +YKG+ V + ++T +Q K + L K +H +++ +G+
Sbjct: 43 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 99
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
S ++ +V ++ S HL + E + + I A+ + +LH+
Sbjct: 100 ------STKPQLAIVTQWCEGSSLYHHL--HIIETKFEMIKLIDIARQTAQGMDYLHAKS 151
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
I L +NNI L E K+ D+G++ + + + + L++ A
Sbjct: 152 I---IHRDLKSNNIFLHEDLTVKIGDFGLATV---KSRWSGSHQFEQLSGSILWM----A 201
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
V+ + D + DVY FG +L E + G +
Sbjct: 202 PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 234
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
+ +EL + D + +G G G++ GRL+ VAI++L Y+ K R
Sbjct: 38 FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 90
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
DFL + HP+++ L G +S V +V EY+ NGS + L ++
Sbjct: 91 RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDA 142
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ + + +L G+A + +L G L NIL++ + + K+SD+G+S ++
Sbjct: 143 QFTV--IQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVL 197
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
E+ P+A Y G + I TS E + ++ DV+++G +L E +
Sbjct: 198 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 244
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
+ +EL + D + +G G G++ GRL+ VAI++L Y+ K R
Sbjct: 38 FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 90
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
DFL + HP+++ L G +S V +V EY+ NGS + L ++
Sbjct: 91 RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDA 142
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ + + +L G+A + +L G L NIL++ + + K+SD+G+S ++
Sbjct: 143 QFTV--IQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVL 197
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
E+ P+A Y G + I TS E + ++ DV+++G +L E +
Sbjct: 198 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 244
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 132/312 (42%), Gaps = 59/312 (18%)
Query: 422 QGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTY-VAIRSLT------- 473
QGSP Y + +E + +G G G++Y+G + + VA+++L
Sbjct: 13 QGSPNYDKWEMER-----TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVE 67
Query: 474 -FLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR 532
FLK+ ++ + +++HP+LV LLG C + +++ E++ G+
Sbjct: 68 EFLKEAAV---------MKEIKHPNLVQLLGVC--------TREPPFYIITEFMTYGNLL 110
Query: 533 AHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKL 591
+L E C + L + ++ A+ +L +F +R L N L+ E+ + K+
Sbjct: 111 DYLRE-CNRQEVNAVVLLYMATQISSAMEYLEKK----NFIHRDLAARNCLVGENHLVKV 165
Query: 592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFI 651
+D+G+S +M G+ A G F + +A + + ++ DV+ FG +
Sbjct: 166 ADFGLSRLM--------TGDTYTAHAGAKFPIKWTAPESLAY---NKFSIKSDVWAFGVL 214
Query: 652 LLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCIC 711
L E + G L+++ +D R + C ++ V + C
Sbjct: 215 LWEIATYGMSPYPG--IDLSQVYELLEKDYRMERPE-----GCPEK----VYELMRACWQ 263
Query: 712 PEPSSRPSFEDV 723
PS RPSF ++
Sbjct: 264 WNPSDRPSFAEI 275
>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
pdb|2JKO|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 121/287 (42%), Gaps = 53/287 (18%)
Query: 448 MGEGSRGKLYKGRL---EN-GTYVAIRSL------TFLKKYSIQNLKVRLDFLSKLQHPH 497
+GEG G +++G EN VAI++ + +K+ + L +R + HPH
Sbjct: 18 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMR-----QFDHPH 72
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
+V L+G E N V+++ E G R+ L V K+S LA LI A
Sbjct: 73 IVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKFSLDLASLILYA 117
Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
+ + + S F +R + N+L+ KL D+G+S ME+ KA
Sbjct: 118 YQLSTALAYLESKRFVHRDIAARNVLVSATDCVKLGDFGLSRYMEDSTYY-------KAS 170
Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF 676
G L I + E+ ++ +R DV+ FG + E L+ + +G + N
Sbjct: 171 KGKLPIKWMAPES----INFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIG 223
Query: 677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
++G R + P T + S+ KC +PS RP F ++
Sbjct: 224 RIENGERLPMPPNCPPT--------LYSLMTKCWAYDPSRRPRFTEL 262
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
+ +EL + D + +G G G++ GRL+ VAI++L Y+ K R
Sbjct: 36 FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 88
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
DFL + HP+++ L G +S V +V EY+ NGS + L ++
Sbjct: 89 RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDA 140
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ + + +L G+A + +L G L NIL++ + + K+SD+G+S ++
Sbjct: 141 QFTV--IQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVL 195
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
E+ P+A Y G + I TS E + ++ DV+++G +L E +
Sbjct: 196 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 242
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G GS G +YKG+ V + ++T +Q K + L K +H +++ +G+
Sbjct: 16 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 72
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
S ++ +V ++ S HL + E + + I A+ + +LH+
Sbjct: 73 ------STKPQLAIVTQWCEGSSLYHHL--HIIETKFEMIKLIDIARQTAQGMDYLHAKS 124
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
I L +NNI L E K+ D+G++ + + + + L++ A
Sbjct: 125 I---IHRDLKSNNIFLHEDLTVKIGDFGLATV---KSRWSGSHQFEQLSGSILWM----A 174
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
V+ + D + DVY FG +L E + G +
Sbjct: 175 PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 207
>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 122/287 (42%), Gaps = 53/287 (18%)
Query: 448 MGEGSRGKLYKGRL---EN-GTYVAIRSL------TFLKKYSIQNLKVRLDFLSKLQHPH 497
+GEG G +++G EN VAI++ + +K+ + L +R + HPH
Sbjct: 398 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMR-----QFDHPH 452
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
+V L+G E N V+++ E G R+ L V K+S LA LI A
Sbjct: 453 IVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKFSLDLASLILYA 497
Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
+ + + S F +R + N+L+ + KL D+G+S ME+ KA
Sbjct: 498 YQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-------KAS 550
Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF 676
G L I + E+ ++ +R DV+ FG + E L+ + +G + N
Sbjct: 551 KGKLPIKWMAPES----INFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIG 603
Query: 677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
++G R + P T + S+ KC +PS RP F ++
Sbjct: 604 RIENGERLPMPPNCPPT--------LYSLMTKCWAYDPSRRPRFTEL 642
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 448 MGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCI 506
+G+G+ GK+YK + E G A + + + +++ V ++ L+ HP++V LLG
Sbjct: 19 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYY 78
Query: 507 ESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSS 566
G K++++ E+ P G+ A + E + L + + +A++FLHS
Sbjct: 79 HDG--------KLWIMIEFCPGGAVDAIMLEL--DRGLTEPQIQVVCRQMLEALNFLHSK 128
Query: 567 VISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
I L N+L+ +L+D+G+S
Sbjct: 129 RI---IHRDLKAGNVLMTLEGDIRLADFGVS 156
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G GS G +YKG+ V + ++T +Q K + L K +H +++ +G+
Sbjct: 44 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 100
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
S ++ +V ++ S HL + E + + I A+ + +LH+
Sbjct: 101 ------STKPQLAIVTQWCEGSSLYHHL--HIIETKFEMIKLIDIARQTAQGMDYLHAKS 152
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
I L +NNI L E K+ D+G++ + + + + L++ A
Sbjct: 153 I---IHRDLKSNNIFLHEDLTVKIGDFGLATV---KSRWSGSHQFEQLSGSILWM----A 202
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
V+ + D + DVY FG +L E + G +
Sbjct: 203 PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 235
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G GS G +YKG+ V + ++T +Q K + L K +H +++ +G+
Sbjct: 21 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 77
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
S ++ +V ++ S HL + E + + I A+ + +LH+
Sbjct: 78 ------STKPQLAIVTQWCEGSSLYHHL--HIIETKFEMIKLIDIARQTAQGMDYLHAKS 129
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
I L +NNI L E K+ D+G++ + + + + L++ A
Sbjct: 130 I---IHRDLKSNNIFLHEDLTVKIGDFGLATV---KSRWSGSHQFEQLSGSILWM----A 179
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
V+ + D + DVY FG +L E + G +
Sbjct: 180 PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 212
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G GS G +YKG+ V + ++T +Q K + L K +H +++ +G+
Sbjct: 18 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY--- 74
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
S ++ +V ++ S HL + E + + I A+ + +LH+
Sbjct: 75 ------STKPQLAIVTQWCEGSSLYHHL--HIIETKFEMIKLIDIARQTAQGMDYLHAKS 126
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
I L +NNI L E K+ D+G++ + + + + L++ A
Sbjct: 127 I---IHRDLKSNNIFLHEDLTVKIGDFGLATV---KSRWSGSHQFEQLSGSILWM----A 176
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
V+ + D + DVY FG +L E + G +
Sbjct: 177 PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 209
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
+ +EL + D + +G G G++ GRL+ VAI++L Y+ K R
Sbjct: 38 FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 90
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
DFL + HP+++ L G +S V +V EY+ NGS + L ++
Sbjct: 91 RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDA 142
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ + + +L G+A + +L G L NIL++ + + K+SD+G+S ++
Sbjct: 143 QFTV--IQLVGMLRGIASGMKYLSDM---GFVHRDLAARNILINSNLVCKVSDFGLSRVL 197
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
E+ P+A Y G + I TS E + ++ DV+++G +L E +
Sbjct: 198 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 244
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 117/279 (41%), Gaps = 35/279 (12%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYS--IQNLKVRLDFLSKLQHPHLVSLLGHC 505
+G GS G +++ +G+ VA++ L ++ + + + +L+HP++V +G
Sbjct: 45 IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 506 IESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHS 565
+ + + +V EY+ GS L ++ L RL++ VAK +++LH+
Sbjct: 104 TQPPN--------LSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHN 155
Query: 566 SVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRT 625
N L + N+L+D+ K+ D+G+S ++ L +K + + R
Sbjct: 156 RNPPIVHRN-LKSPNLLVDKKYTVKVCDFGLS-RLKASTFLSSKSAAGTPEWMAPEVLRD 213
Query: 626 SAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRI 685
N + DVY+FG IL E + + G +A+ G + R I
Sbjct: 214 EPSNE-----------KSDVYSFGVILWE--LATLQQPWGNLNPAQVVAAVGFKCKRLEI 260
Query: 686 VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
P L V +I C EP RPSF ++
Sbjct: 261 --PRNLNPQ-------VAAIIEGCWTNEPWKRPSFATIM 290
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 100/231 (43%), Gaps = 32/231 (13%)
Query: 436 KEATNNFDSLSFMGEGSRGKLY----KGRLENGTYVAIRSL--TFLKKYSIQNLKVRLDF 489
K ++F+ L +G+GS GK++ R ++G A++ L LK K+ D
Sbjct: 24 KADPSHFELLKVLGQGSFGKVFLVRKVTRPDSGHLYAMKVLKKATLKVRDRVRTKMERDI 83
Query: 490 LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDR 549
L+ + HP +V L G K++L+ +++ G LS+ E + D
Sbjct: 84 LADVNHPFVVKLHYAFQTEG--------KLYLILDFLRGGDLFTRLSK---EVMFTEEDV 132
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAK 609
L +A + LHS G L NILLDE KL+D+G+S +HEK
Sbjct: 133 KFYLAELALGLDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEK---- 185
Query: 610 GEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
KA Y F C T VV+ Q D +++G ++ E L G +
Sbjct: 186 ----KA-YSF---CGTVEYMAPEVVNRQGHSHSADWWSYGVLMFEMLTGSL 228
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 118/292 (40%), Gaps = 45/292 (15%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDF------LSKLQHPHLVSL 501
+GEG+ GK++ N + + L +K L R DF L+ LQH H+V
Sbjct: 23 LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVL---------KWSDRLAI 552
G C + + + +V+EY+ +G L + P+ ++ K L+
Sbjct: 83 YGVC--------GDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQ 134
Query: 553 LIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGE 611
++ +A + + S F +R L T N L+ + + K+ D+G+S + + G
Sbjct: 135 MLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGG- 193
Query: 612 GPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLN 671
+ L I E+++ ++ E DV++FG IL E GK F L+
Sbjct: 194 -----HTMLPIRWMPPESIM----YRKFTTESDVWSFGVILWEIF----TYGKQPWFQLS 240
Query: 672 EMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
R + P V C +E +++ C EP R + +++
Sbjct: 241 NTEVIECITQGRVLERPRV---CPKEVYDVMLG----CWQREPQQRLNIKEI 285
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 448 MGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCI 506
+G+G+ GK+YK + E G A + + + +++ V ++ L+ HP++V LLG
Sbjct: 27 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYY 86
Query: 507 ESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSS 566
G K++++ E+ P G+ A + E + L + + +A++FLHS
Sbjct: 87 HDG--------KLWIMIEFCPGGAVDAIMLEL--DRGLTEPQIQVVCRQMLEALNFLHSK 136
Query: 567 VISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
I L N+L+ +L+D+G+S
Sbjct: 137 RI---IHRDLKAGNVLMTLEGDIRLADFGVS 164
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 117 LSSLELLDMSSNFLFGAI-PSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS 175
L+ LE LD+S N ++ P+ L RL TL +D + P + L+ L L L+
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 176 NQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKG 235
N L+ + + LT + + N +S +P+ A LH LD
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRIS-SVPE-RAFRGLHSLD---------------- 180
Query: 236 LVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
+LL +N + P F +L +L L L N+LS +P L L + YL L N
Sbjct: 181 --RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 5/138 (3%)
Query: 167 NLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNN-ELSGKLP-DMSALTSLHVLDLRENK 224
NLT+L L SN L ++ +A L + +S+N +L P L LH L L
Sbjct: 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116
Query: 225 LDSGLPLMPKGLVT---VLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSL 281
L P + +GL + L N F +L L HL L N +S +P L
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176
Query: 282 PNISYLHLASNMLSGTLP 299
++ L L N ++ P
Sbjct: 177 HSLDRLLLHQNRVAHVHP 194
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 93/208 (44%), Gaps = 26/208 (12%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G G G+++ G N T VA+++L S+Q + + LQH LV L
Sbjct: 21 LGAGQFGEVWMGYYNNSTKVAVKTLK-PGTMSVQAFLEEANLMKTLQHDKLVRLYAVV-- 77
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
+ ++++ EY+ GS L + VL L LI + + + +
Sbjct: 78 ------TREEPIYIITEYMAKGSLLDFLKSDEGGKVL-----LPKLIDFSAQIAEGMAYI 126
Query: 568 ISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTS 626
++ +R L N+L+ E + K++D+G++ ++E++E AR G F + +
Sbjct: 127 ERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEY--------TAREGAKFPIKWT 178
Query: 627 AENVVIVVDIQRTKLEDDVYNFGFILLE 654
A ++ ++ DV++FG +L E
Sbjct: 179 APE---AINFGCFTIKSDVWSFGILLYE 203
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/304 (21%), Positives = 126/304 (41%), Gaps = 40/304 (13%)
Query: 420 GTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYS 479
G+Q + ++ +E + + +G G G+++ G T VA++SL S
Sbjct: 1 GSQTQKPQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMS 59
Query: 480 IQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
+ + +LQH LV L + ++++ EY+ NGS L
Sbjct: 60 PDAFLAEANLMKQLQHQRLVRLYAVVTQE---------PIYIITEYMENGSLVDFL--KT 108
Query: 540 PENV-LKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
P + L + L + +A+ + F+ ++ +R L NIL+ + K++D+G++
Sbjct: 109 PSGIKLTINKLLDMAAQIAEGMAFIEER----NYIHRDLRAANILVSDTLSCKIADFGLA 164
Query: 598 IIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV 657
++E++E AR G F + +A ++ ++ DV++FG +L E +
Sbjct: 165 RLIEDNEX--------TAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLTEIVT 213
Query: 658 GPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSR 717
+ G + N + G R+V P C +E + + C P R
Sbjct: 214 HGRIPYPG---MTNPEVIQNLERG-YRMVRP---DNCPEE----LYQLMRLCWKERPEDR 262
Query: 718 PSFE 721
P+F+
Sbjct: 263 PTFD 266
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 117 LSSLELLDMSSNFLFGAI-PSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS 175
L+ LE LD+S N ++ P+ L RL TL +D + P + L+ L L L+
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 176 NQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKG 235
N L+ + + LT + + N +S +P+ A LH LD
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHGNRIS-SVPE-RAFRGLHSLD---------------- 179
Query: 236 LVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
+LL +N + P F +L +L L L N+LS +P L L + YL L N
Sbjct: 180 --RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 5/138 (3%)
Query: 167 NLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNN-ELSGKLP-DMSALTSLHVLDLRENK 224
NLT+L L SN L ++ +A L + +S+N +L P L LH L L
Sbjct: 56 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 115
Query: 225 LDSGLPLMPKGLVT---VLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSL 281
L P + +GL + L N F +L L HL L N +S +P L
Sbjct: 116 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 175
Query: 282 PNISYLHLASNMLSGTLP 299
++ L L N ++ P
Sbjct: 176 HSLDRLLLHQNRVAHVHP 193
>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo
Form)
pdb|4FVQ|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain
(Mg-Atp-Bound Form)
Length = 289
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 125/298 (41%), Gaps = 61/298 (20%)
Query: 448 MGEGSRGKLYKG-RLENGTYVAIRSLTFLKK--------YSIQNLKVRLDFLSKLQHPHL 498
+G+G+ K++KG R E G Y + L K YS ++ +SKL H HL
Sbjct: 16 LGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYS-ESFFEAASMMSKLSHKHL 74
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V G C+ G ++ LV E++ GS +L +N +N + +L + +A
Sbjct: 75 VLNYGVCV-CGDEN-------ILVQEFVKFGSLDTYLKKN--KNCINILWKLEVAKQLAA 124
Query: 559 AVHFLH-SSVISGSFSNRLTTNNILL--DEHR------IAKLSDYGISIIMEEHEKLEAK 609
A+HFL +++I G+ + NILL +E R KLSD GISI + + L+ +
Sbjct: 125 AMHFLEENTLIHGN----VCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQER 180
Query: 610 GEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL 669
++ EN + L D ++FG L E G G
Sbjct: 181 ---------IPWVPPECIENP------KNLNLATDKWSFGTTLWEICSG----GDKPLSA 221
Query: 670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
L+ + R ++ P + + ++ N C+ EP RPSF ++ +L
Sbjct: 222 LDSQRKLQFYEDRHQLPAP---------KAAELANLINNCMDYEPDHRPSFRAIIRDL 270
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 108/240 (45%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
+ +EL + D + +G G G++ GRL+ VAI++L Y+ K R
Sbjct: 38 FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 90
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
DFL + HP+++ L G +S V +V EY+ NGS + L ++
Sbjct: 91 RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDA 142
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ + + +L G+A + +L G L NIL++ + + K+SD+G++ ++
Sbjct: 143 QFTV--IQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLARVL 197
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
E+ P+A Y G + I TS E + ++ DV+++G +L E +
Sbjct: 198 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 244
>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains.
pdb|2J0K|B Chain B, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 121/287 (42%), Gaps = 53/287 (18%)
Query: 448 MGEGSRGKLYKGRL---EN-GTYVAIRSL------TFLKKYSIQNLKVRLDFLSKLQHPH 497
+GEG G +++G EN VAI++ + +K+ + L +R + HPH
Sbjct: 398 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMR-----QFDHPH 452
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
+V L+G E N V+++ E G R+ L V K+S LA LI A
Sbjct: 453 IVKLIGVITE---------NPVWIIMELCTLGELRSFL------QVRKFSLDLASLILYA 497
Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
+ + + S F +R + N+L+ KL D+G+S ME+ KA
Sbjct: 498 YQLSTALAYLESKRFVHRDIAARNVLVSATDCVKLGDFGLSRYMEDSTYY-------KAS 550
Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASF 676
G L I + E+ ++ +R DV+ FG + E L+ + +G + N
Sbjct: 551 KGKLPIKWMAPES----INFRRFTSASDVWMFGVCMWEILMHGVKPFQG---VKNNDVIG 603
Query: 677 GSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
++G R + P T + S+ KC +PS RP F ++
Sbjct: 604 RIENGERLPMPPNCPPT--------LYSLMTKCWAYDPSRRPRFTEL 642
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 41/238 (17%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL------TFLKKYSIQNLKVRLDFLSK 492
++ + +GEGS G ++K R + G VAI+ +KK +++ +++ L +
Sbjct: 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRM----LKQ 58
Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRA--HLSENCPENVLKWSDRL 550
L+HP+LV+LL + ++ LV+EY + PE+++K
Sbjct: 59 LKHPNLVNLL--------EVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLVK----- 105
Query: 551 AILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKG 610
+I +AV+F H + NIL+ +H + KL D+G + ++
Sbjct: 106 SITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLL---------- 152
Query: 611 EGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG-PIVTGKGEA 667
GP Y R ++V D Q DV+ G + E L G P+ GK +
Sbjct: 153 TGPSDYYDDEVATRWYRSPELLVGDTQYGP-PVDVWAIGCVFAELLSGVPLWPGKSDV 209
>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk
Length = 476
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 32/177 (18%)
Query: 448 MGEGSRGKLYKGRLE-NGTYVA--------IRSLTFLKKY--SIQNLKVRLDFLSKLQHP 496
+G G+ GK+ G+ E G VA IRSL + K IQNLK+ +HP
Sbjct: 24 LGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKL-------FRHP 76
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGV 556
H++ L Q S + +F+V EY+ G ++ C L + + +
Sbjct: 77 HIIKLY--------QVISTPSDIFMVMEYVSGGELFDYI---CKNGRLDEKESRRLFQQI 125
Query: 557 AKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGP 613
V + H ++ L N+LLD H AK++D+G+S +M + E L P
Sbjct: 126 LSGVDYCHRHMV---VHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRXSCGSP 179
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 12/187 (6%)
Query: 114 IHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL 173
+ +L++LE L ++N + P GI L L L+++ N D SL+NLT L L
Sbjct: 190 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 245
Query: 174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMP 233
+NQ+ P + + LT++ + N++S P ++ LT+L L+L EN+L+ P+
Sbjct: 246 ANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISN 302
Query: 234 -KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
K L + L N S P L +LQ L S N +S + S L +L NI++L N
Sbjct: 303 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHN 358
Query: 293 MLSGTLP 299
+S P
Sbjct: 359 QISDLTP 365
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 12/187 (6%)
Query: 114 IHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL 173
+ +L++LE L ++N + P GI L L L+++ N D SL+NLT L L
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 246
Query: 174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMP 233
+NQ+ P + + LT++ + N++S P ++ LT+L L+L EN+L+ P+
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISN 303
Query: 234 -KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
K L + L N S P L +LQ L S N +S + S L +L NI++L N
Sbjct: 304 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHN 359
Query: 293 MLSGTLP 299
+S P
Sbjct: 360 QISDLTP 366
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
+ +EL + D + +G G G++ GRL+ VAI++L Y+ K R
Sbjct: 38 FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 90
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
DFL + HP+++ L G +S V +V EY+ NGS + L ++
Sbjct: 91 RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEYMENGSLDSFLRKHDA 142
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ + + +L G+A + +L G L NIL++ + + K+SD+G+ ++
Sbjct: 143 QFTV--IQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLGRVL 197
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
E+ P+A Y G + I TS E + ++ DV+++G +L E +
Sbjct: 198 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 244
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 108/240 (45%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
+ +EL + D + +G G G++ GRL+ VAI++L Y+ K R
Sbjct: 38 FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 90
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
DFL + HP+++ L G +S V +V E + NGS + L ++
Sbjct: 91 RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEXMENGSLDSFLRKHDA 142
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ + + +L G+A + +L G+ L NIL++ + + K+SD+G+S ++
Sbjct: 143 QFTV--IQLVGMLRGIASGMKYLSDM---GAVHRDLAARNILINSNLVCKVSDFGLSRVL 197
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
E+ P+A Y G + I TS E + ++ DV+++G +L E +
Sbjct: 198 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 244
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 119/280 (42%), Gaps = 37/280 (13%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYS--IQNLKVRLDFLSKLQHPHLVSLLGHC 505
+G GS G +++ +G+ VA++ L ++ + + + +L+HP++V +G
Sbjct: 45 IGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAV 103
Query: 506 IESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHS 565
+ + + +V EY+ GS L ++ L RL++ VAK +++LH+
Sbjct: 104 TQPPN--------LSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHN 155
Query: 566 SVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICR 624
+ +R L + N+L+D+ K+ D+G+S ++ L +K + + R
Sbjct: 156 R--NPPIVHRDLKSPNLLVDKKYTVKVCDFGLS-RLKASXFLXSKXAAGTPEWMAPEVLR 212
Query: 625 TSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRR 684
N + DVY+FG IL E + + G +A+ G + R
Sbjct: 213 DEPSNE-----------KSDVYSFGVILWE--LATLQQPWGNLNPAQVVAAVGFKCKRLE 259
Query: 685 IVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
I P L V +I C EP RPSF ++
Sbjct: 260 I--PRNLNPQ-------VAAIIEGCWTNEPWKRPSFATIM 290
>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
Into Receptor Autoregulation
Length = 343
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 122/310 (39%), Gaps = 62/310 (20%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR------LENGTYVAIRSLTFLKKYSIQ-NLKVRLDFLSK 492
NN + + +GEG+ G++++ R E T VA++ L +Q + + +++
Sbjct: 47 NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAE 106
Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV--------- 543
+P++V LLG C + + L++EY+ G L P V
Sbjct: 107 FDNPNIVKLLGVC--------AVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLS 158
Query: 544 ------------LKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAK 590
L +++L I VA + +L F +R L T N L+ E+ + K
Sbjct: 159 TRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER----KFVHRDLATRNCLVGENMVVK 214
Query: 591 LSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGF 650
++D+G+S + + +A G + I E++ R E DV+ +G
Sbjct: 215 IADFGLSRNIYSADYYKADGNDA------IPIRWMPPESIF----YNRYTTESDVWAYGV 264
Query: 651 ILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCI 710
+L E + G A +E + +DG + C + + ++ C
Sbjct: 265 VLWEIFSYGLQPYYGMA---HEEVIYYVRDGN--------ILACPENCPLELYNLMRLCW 313
Query: 711 CPEPSSRPSF 720
P+ RPSF
Sbjct: 314 SKLPADRPSF 323
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 131/311 (42%), Gaps = 59/311 (18%)
Query: 423 GSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTY-VAIRSLT-------- 473
GSP Y + +E + +G G G++Y+G + + VA+++L
Sbjct: 1 GSPNYDKWEMER-----TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE 55
Query: 474 FLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRA 533
FLK+ ++ + +++HP+LV LLG C + +++ E++ G+
Sbjct: 56 FLKEAAV---------MKEIKHPNLVQLLGVC--------TREPPFYIIIEFMTYGNLLD 98
Query: 534 HLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLS 592
+L E C + L + ++ A+ +L +F +R L N L+ E+ + K++
Sbjct: 99 YLRE-CNRQEVSAVVLLYMATQISSAMEYLEKK----NFIHRDLAARNCLVGENHLVKVA 153
Query: 593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFIL 652
D+G+S +M G+ A G F + +A + + ++ DV+ FG +L
Sbjct: 154 DFGLSRLM--------TGDTYTAHAGAKFPIKWTAPESLAY---NKFSIKSDVWAFGVLL 202
Query: 653 LESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICP 712
E + G L+++ +D R + C ++ V + C
Sbjct: 203 WEIATYGMSPYPG--IDLSQVYELLEKDYRMERPE-----GCPEK----VYELMRACWQW 251
Query: 713 EPSSRPSFEDV 723
PS RPSF ++
Sbjct: 252 NPSDRPSFAEI 262
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
+G G G++Y+G + + VA+++L FLK+ ++ + +++HP+L
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 76
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V LLG C + +++ E++ G+ +L E C + L + ++
Sbjct: 77 VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 127
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
A+ +L +F +R L N L+ E+ + K++D+G+S +M G+ A
Sbjct: 128 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTXTAHA 175
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
G F + +A + + ++ DV+ FG +L E + G L+++
Sbjct: 176 GAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 230
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+D R + C ++ V + C PS RPSF ++
Sbjct: 231 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 267
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 131/311 (42%), Gaps = 59/311 (18%)
Query: 423 GSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTY-VAIRSLT-------- 473
GSP Y + +E + +G G G++Y+G + + VA+++L
Sbjct: 1 GSPNYDKWEMER-----TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE 55
Query: 474 FLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRA 533
FLK+ ++ + +++HP+LV LLG C + +++ E++ G+
Sbjct: 56 FLKEAAV---------MKEIKHPNLVQLLGVC--------TREPPFYIIIEFMTYGNLLD 98
Query: 534 HLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLS 592
+L E C + L + ++ A+ +L +F +R L N L+ E+ + K++
Sbjct: 99 YLRE-CNRQEVSAVVLLYMATQISSAMEYLEKK----NFIHRDLAARNCLVGENHLVKVA 153
Query: 593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFIL 652
D+G+S +M G+ A G F + +A + + ++ DV+ FG +L
Sbjct: 154 DFGLSRLM--------TGDTYTAHAGAKFPIKWTAPESLAY---NKFSIKSDVWAFGVLL 202
Query: 653 LESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICP 712
E + G L+++ +D R + C ++ V + C
Sbjct: 203 WEIATYGMSPYPG--IDLSQVYELLEKDYRMERPE-----GCPEK----VYELMRACWQW 251
Query: 713 EPSSRPSFEDV 723
PS RPSF ++
Sbjct: 252 NPSDRPSFAEI 262
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
+G G G++Y+G + + VA+++L FLK+ ++ + +++HP+L
Sbjct: 22 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 72
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V LLG C + +++ E++ G+ +L E C + L + ++
Sbjct: 73 VQLLGVC--------TREPPFYIIIEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 123
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
A+ +L +F +R L N L+ E+ + K++D+G+S +M G+ A
Sbjct: 124 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTXTAHA 171
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
G F + +A + + ++ DV+ FG +L E + G L+++
Sbjct: 172 GAKFPIKWTAPESLAY---NKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 226
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+D R + C ++ V + C PS RPSF ++
Sbjct: 227 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 263
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 131/311 (42%), Gaps = 59/311 (18%)
Query: 423 GSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTY-VAIRSLT-------- 473
GSP Y + +E + +G G G++Y+G + + VA+++L
Sbjct: 1 GSPNYDKWEMER-----TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE 55
Query: 474 FLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRA 533
FLK+ ++ + +++HP+LV LLG C + +++ E++ G+
Sbjct: 56 FLKEAAV---------MKEIKHPNLVQLLGVC--------TREPPFYIITEFMTYGNLLD 98
Query: 534 HLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLS 592
+L E C + L + ++ A+ +L +F +R L N L+ E+ + K++
Sbjct: 99 YLRE-CNRQEVSAVVLLYMATQISSAMEYLEKK----NFIHRDLAARNCLVGENHLVKVA 153
Query: 593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFIL 652
D+G+S +M G+ A G F + +A + + ++ DV+ FG +L
Sbjct: 154 DFGLSRLM--------TGDTYTAHAGAKFPIKWTAPESLAY---NKFSIKSDVWAFGVLL 202
Query: 653 LESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICP 712
E + G L+++ +D R + C ++ V + C
Sbjct: 203 WEIATYGMSPYPG--IDLSQVYELLEKDYRMERPE-----GCPEK----VYELMRACWQW 251
Query: 713 EPSSRPSFEDV 723
PS RPSF ++
Sbjct: 252 NPSDRPSFAEI 262
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 131/311 (42%), Gaps = 59/311 (18%)
Query: 423 GSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTY-VAIRSLT-------- 473
GSP Y + +E + +G G G++Y+G + + VA+++L
Sbjct: 1 GSPNYDKWEMER-----TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE 55
Query: 474 FLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRA 533
FLK+ ++ + +++HP+LV LLG C + +++ E++ G+
Sbjct: 56 FLKEAAV---------MKEIKHPNLVQLLGVC--------TREPPFYIITEFMTYGNLLD 98
Query: 534 HLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLS 592
+L E C + L + ++ A+ +L +F +R L N L+ E+ + K++
Sbjct: 99 YLRE-CNRQEVSAVVLLYMATQISSAMEYLEKK----NFIHRDLAARNCLVGENHLVKVA 153
Query: 593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFIL 652
D+G+S +M G+ A G F + +A + + ++ DV+ FG +L
Sbjct: 154 DFGLSRLM--------TGDTYTAHAGAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLL 202
Query: 653 LESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICP 712
E + G L+++ +D R + C ++ V + C
Sbjct: 203 WEIATYGMSPYPG--IDLSQVYELLEKDYRMERPE-----GCPEK----VYELMRACWQW 251
Query: 713 EPSSRPSFEDV 723
PS RPSF ++
Sbjct: 252 NPSDRPSFAEI 262
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 97/217 (44%), Gaps = 43/217 (19%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
+G G G++Y G + + VA+++L FLK+ ++ + +++HP+L
Sbjct: 40 LGGGQYGEVYVGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 90
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V LLG C + ++V EY+P G+ +L E E V +L+ +A
Sbjct: 91 VQLLGVC--------TLEPPFYIVTEYMPYGNLLDYLRECNREEVTA-----VVLLYMAT 137
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
+ + +F +R L N L+ E+ + K++D+G+S +M G+ A
Sbjct: 138 QISSAMEYLEKKNFIHRDLAARNCLVGENHVVKVADFGLSRLM--------TGDTYTAHA 189
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
G F + +A + ++ DV+ FG +L E
Sbjct: 190 GAKFPIKWTAPESLA---YNTFSIKSDVWAFGVLLWE 223
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 47/224 (20%)
Query: 448 MGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
+G G G++ GRL+ VAI++L + K R DFLS + HP+
Sbjct: 16 IGVGEFGEVCSGRLKVPGKREICVAIKTLK-----AGYTDKQRRDFLSEASIMGQFDHPN 70
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
++ L G + V ++ EY+ NGS A L +N + + +L G+
Sbjct: 71 IIHLEGVV--------TKCKPVMIITEYMENGSLDAFLRKN--DGRFTVIQLVGMLRGIG 120
Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
+ +L S+ +R L NIL++ + + K+SD+G+S ++E+ P+A
Sbjct: 121 SGMKYLSDM----SYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDD---------PEAA 167
Query: 617 Y----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
Y G + I T+ E + ++ DV+++G ++ E +
Sbjct: 168 YTTRGGKIPIRWTAPEAIA----YRKFTSASDVWSYGIVMWEVM 207
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
+G G G++Y+G + + VA+++L FLK+ ++ + +++HP+L
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 76
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V LLG C + +++ E++ G+ +L E C + L + ++
Sbjct: 77 VQLLGVC--------TREPPFYIIIEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 127
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
A+ +L +F +R L N L+ E+ + K++D+G+S +M G+ A
Sbjct: 128 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 175
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
G F + +A + + ++ DV+ FG +L E + G L+++
Sbjct: 176 GAKFPIKWTAPESLAY---NKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 230
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+D R + C ++ V + C PS RPSF ++
Sbjct: 231 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 267
>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 7 Activated Mutant (S287d, T291d)
Length = 318
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 26/188 (13%)
Query: 420 GTQGSPAYRTFYL----EELKEATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTF 474
G+ GS +T YL + + N+ ++L MG G+ G+++K R + G +A++ +
Sbjct: 1 GSSGSSGKQTGYLTIGGQRYQAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRR 60
Query: 475 LKKYSIQNLKVRLDF---LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS- 530
+N ++ +D L P++V G I +NT+ VF+ E + +
Sbjct: 61 SGNKE-ENKRILMDLDVVLKSHDCPYIVQCFGTFI-------TNTD-VFIAMELMGTCAE 111
Query: 531 -YRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIA 589
+ + PE +L + + + KA+++L G + +NILLDE
Sbjct: 112 KLKKRMQGPIPERILG-----KMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGQI 164
Query: 590 KLSDYGIS 597
KL D+GIS
Sbjct: 165 KLCDFGIS 172
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
+ +EL + D + +G G G++ GRL+ VAI++L Y+ K R
Sbjct: 9 FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 61
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
DFL + HP+++ L G +S V +V E + NGS + L ++
Sbjct: 62 RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEXMENGSLDSFLRKHDA 113
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ + + +L G+A + +L G L NIL++ + + K+SD+G+S ++
Sbjct: 114 QFTV--IQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVL 168
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
E+ P+A Y G + I TS E + ++ DV+++G +L E +
Sbjct: 169 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 215
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 47/224 (20%)
Query: 448 MGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
+G G G++ GRL+ VAI++L + K R DFLS + HP+
Sbjct: 22 IGVGEFGEVCSGRLKVPGKREICVAIKTLK-----AGYTDKQRRDFLSEASIMGQFDHPN 76
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
++ L G + V ++ EY+ NGS A L +N + + +L G+
Sbjct: 77 IIHLEGVV--------TKCKPVMIITEYMENGSLDAFLRKN--DGRFTVIQLVGMLRGIG 126
Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
+ +L S+ +R L NIL++ + + K+SD+G+S ++E+ P+A
Sbjct: 127 SGMKYLSDM----SYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDD---------PEAA 173
Query: 617 Y----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
Y G + I T+ E + ++ DV+++G ++ E +
Sbjct: 174 YTTRGGKIPIRWTAPEAIA----YRKFTSASDVWSYGIVMWEVM 213
>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant
V617f (Mg- Atp-Bound Form)
Length = 289
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 124/298 (41%), Gaps = 61/298 (20%)
Query: 448 MGEGSRGKLYKG-RLENGTYVAIRSLTFLKK--------YSIQNLKVRLDFLSKLQHPHL 498
+G+G+ K++KG R E G Y + L K YS ++ +SKL H HL
Sbjct: 16 LGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYS-ESFFEAASMMSKLSHKHL 74
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V G C G ++ LV E++ GS +L +N +N + +L + +A
Sbjct: 75 VLNYGVCF-CGDEN-------ILVQEFVKFGSLDTYLKKN--KNCINILWKLEVAKQLAW 124
Query: 559 AVHFLH-SSVISGSFSNRLTTNNILL--DEHR------IAKLSDYGISIIMEEHEKLEAK 609
A+HFL +++I G+ + NILL +E R KLSD GISI + + L+ +
Sbjct: 125 AMHFLEENTLIHGN----VCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQER 180
Query: 610 GEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFL 669
C + +N+ L D ++FG L E G G
Sbjct: 181 IPWVPPE------CIENPKNL---------NLATDKWSFGTTLWEICSG----GDKPLSA 221
Query: 670 LNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
L+ + R ++ P + + ++ N C+ EP RPSF ++ +L
Sbjct: 222 LDSQRKLQFYEDRHQLPAP---------KAAELANLINNCMDYEPDHRPSFRAIIRDL 270
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 12/187 (6%)
Query: 114 IHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL 173
+ +L++LE L ++N + P GI L L L+++ N D SL+NLT L L
Sbjct: 194 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 249
Query: 174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMP 233
+NQ+ P + + LT++ + N++S P ++ LT+L L+L EN+L+ P+
Sbjct: 250 ANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISN 306
Query: 234 -KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
K L + L N S P L +LQ L + N +S + S L +L NI++L N
Sbjct: 307 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHN 362
Query: 293 MLSGTLP 299
+S P
Sbjct: 363 QISDLTP 369
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
+G G G++Y+G + + VA+++L FLK+ ++ + +++HP+L
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 76
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V LLG C + +++ E++ G+ +L E C + L + ++
Sbjct: 77 VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 127
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
A+ +L +F +R L N L+ E+ + K++D+G+S +M G+ A
Sbjct: 128 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 175
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
G F + +A + + ++ DV+ FG +L E + G L+++
Sbjct: 176 GAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 230
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+D R + C ++ V + C PS RPSF ++
Sbjct: 231 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 267
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
+G G G++Y+G + + VA+++L FLK+ ++ + +++HP+L
Sbjct: 25 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 75
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V LLG C + +++ E++ G+ +L E C + L + ++
Sbjct: 76 VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 126
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
A+ +L +F +R L N L+ E+ + K++D+G+S +M G+ A
Sbjct: 127 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 174
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
G F + +A + + ++ DV+ FG +L E + G L+++
Sbjct: 175 GAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 229
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+D R + C ++ V + C PS RPSF ++
Sbjct: 230 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 266
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 24/132 (18%)
Query: 165 LSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD--MSALTSLHVLDLRE 222
L+NLT L L NQL+ ++ L ++ + N+L LPD LT+L L+L
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAH 142
Query: 223 NKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLP 282
N+L S +PKG+ F +L L LDLS+N L +P V L
Sbjct: 143 NQLQS----LPKGV-----------------FDKLTNLTELDLSYNQLQSLPEGVFDKLT 181
Query: 283 NISYLHLASNML 294
+ L L N L
Sbjct: 182 QLKDLRLYQNQL 193
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 52/195 (26%)
Query: 112 DKIHRLSSL-ELLDMSSNFLFG----AIPSGI-SRLVRLQTLTMDTNFFDDNVPDW-WDS 164
+K+H +S+L EL +++ L G ++P+G+ +L L+ L + N ++PD +D
Sbjct: 73 NKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDK 131
Query: 165 LSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENK 224
L+NLT L+L NQL+ P + LT+L LDL N+
Sbjct: 132 LTNLTYLNLAHNQLQS-LPKGV----------------------FDKLTNLTELDLSYNQ 168
Query: 225 LDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNI 284
L S +P+G+ F +L QL+ L L N L +P V L ++
Sbjct: 169 LQS----LPEGV-----------------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207
Query: 285 SYLHLASNMLSGTLP 299
Y+ L N T P
Sbjct: 208 QYIWLHDNPWDCTCP 222
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
+G G G++Y+G + + VA+++L FLK+ ++ + +++HP+L
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 76
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V LLG C + +++ E++ G+ +L E C + L + ++
Sbjct: 77 VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 127
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
A+ +L +F +R L N L+ E+ + K++D+G+S +M G+ A
Sbjct: 128 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 175
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
G F + +A + + ++ DV+ FG +L E + G L+++
Sbjct: 176 GAKFPIKWTAPESLAY---NKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 230
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+D R + C ++ V + C PS RPSF ++
Sbjct: 231 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 267
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 124/291 (42%), Gaps = 56/291 (19%)
Query: 448 MGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
+G G G++ GRL+ VAI++L Y+ K R DFL + HP+
Sbjct: 30 IGAGEFGEVCSGRLKLPGKRELPVAIKTLKV--GYT---EKQRRDFLGEASIMGQFDHPN 84
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
++ L G +S V +V EY+ NGS L +N + + +L G++
Sbjct: 85 IIHLEGVVTKS--------KPVMIVTEYMENGSLDTFLKKN--DGQFTVIQLVGMLRGIS 134
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
+ +L G L NIL++ + + K+SD+G+S ++E+ P+A Y
Sbjct: 135 AGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDD---------PEAAY 182
Query: 618 ----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEM 673
G + I T+ E + ++ DV+++G ++ E + G+ + +
Sbjct: 183 TTRGGKIPIRWTAPEAIA----FRKFTSASDVWSYGIVMWEV----VSYGERPYWEMTNQ 234
Query: 674 ASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
+ + R+ P+ C +++ C E +SRP F++++
Sbjct: 235 DVIKAVEEGYRLPSPM---DCPAALYQLMLD----CWQKERNSRPKFDEIV 278
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
+G G G++Y+G + + VA+++L FLK+ ++ + +++HP+L
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 73
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V LLG C + +++ E++ G+ +L E C + L + ++
Sbjct: 74 VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 124
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
A+ +L +F +R L N L+ E+ + K++D+G+S +M G+ A
Sbjct: 125 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 172
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
G F + +A + + ++ DV+ FG +L E + G L+++
Sbjct: 173 GAKFPIKWTAPESLAY---NKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 227
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+D R + C ++ V + C PS RPSF ++
Sbjct: 228 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 264
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
+G G G++Y+G + + VA+++L FLK+ ++ + +++HP+L
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 76
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V LLG C + +++ E++ G+ +L E C + L + ++
Sbjct: 77 VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVSAVVLLYMATQISS 127
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
A+ +L +F +R L N L+ E+ + K++D+G+S +M G+ A
Sbjct: 128 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 175
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
G F + +A + + ++ DV+ FG +L E + G L+++
Sbjct: 176 GAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 230
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+D R + C ++ V + C PS RPSF ++
Sbjct: 231 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 267
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
+G G G++Y+G + + VA+++L FLK+ ++ + +++HP+L
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 71
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V LLG C + +++ E++ G+ +L E C + L + ++
Sbjct: 72 VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 122
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
A+ +L +F +R L N L+ E+ + K++D+G+S +M G+ A
Sbjct: 123 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 170
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
G F + +A + + ++ DV+ FG +L E + G L+++
Sbjct: 171 GAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 225
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+D R + C ++ V + C PS RPSF ++
Sbjct: 226 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 262
>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2
pdb|3ZZW|B Chain B, Crystal Structure Of The Kinase Domain Of Ror2
Length = 289
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/298 (20%), Positives = 120/298 (40%), Gaps = 56/298 (18%)
Query: 448 MGEGSRGKLYKGRL------ENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQHPHLVS 500
+GE GK+YKG L E VAI++L + + + + ++LQHP++V
Sbjct: 17 LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 76
Query: 501 LLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP-------------ENVLKWS 547
LLG + + +++ Y +G L P ++ L+
Sbjct: 77 LLGVV--------TKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPP 128
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI--SIIMEEHEK 605
D + ++ +A + +L S + L T N+L+ + K+SD G+ + ++ K
Sbjct: 129 DFVHLVAQIAAGMEYLSSHHV---VHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYK 185
Query: 606 LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG 665
L L R A ++ + ++ D++++G +L E
Sbjct: 186 LLGNS---------LLPIRWMAPEAIM---YGKFSIDSDIWSYGVVLWEVF--------- 224
Query: 666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
++ L + +QD I + VL C + + V ++ +C PS RP F+D+
Sbjct: 225 -SYGLQPYCGYSNQDVVEMIRNRQVL-PCPDDCPAWVYALMIECWNEFPSRRPRFKDI 280
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
+G G G++Y+G + + VA+++L FLK+ ++ + +++HP+L
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 71
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V LLG C + +++ E++ G+ +L E C + L + ++
Sbjct: 72 VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 122
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
A+ +L +F +R L N L+ E+ + K++D+G+S +M G+ A
Sbjct: 123 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 170
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
G F + +A + + ++ DV+ FG +L E + G L+++
Sbjct: 171 GAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 225
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+D R + C ++ V + C PS RPSF ++
Sbjct: 226 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 262
>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
Length = 346
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 26/173 (15%)
Query: 434 ELKEATNNFDSLSFMGEGSRGKLYKGRLEN-GTYVAIRSLTF----LKKYSIQNLKVR-L 487
++K ++ L F+GEG +YK R +N VAI+ + K I +R +
Sbjct: 4 DVKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREI 63
Query: 488 DFLSKLQHPHLVSLL---GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVL 544
L +L HP+++ LL GH + + LV++++ + +N VL
Sbjct: 64 KLLQELSHPNIIGLLDAFGH-----------KSNISLVFDFM-ETDLEVIIKDNS--LVL 109
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
S A ++ + + +LH I L NN+LLDE+ + KL+D+G++
Sbjct: 110 TPSHIKAYMLMTLQGLEYLHQHWI---LHRDLKPNNLLLDENGVLKLADFGLA 159
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 45/223 (20%)
Query: 448 MGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
+G G G++ GRL+ VAI++L + K R DFLS + HP+
Sbjct: 37 IGVGEFGEVCSGRLKVPGKREICVAIKTLK-----AGYTDKQRRDFLSEASIMGQFDHPN 91
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
++ L G + V ++ EY+ NGS A L +N + + +L G+
Sbjct: 92 IIHLEGVV--------TKCKPVMIITEYMENGSLDAFLRKN--DGRFTVIQLVGMLRGIG 141
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
+ +L + L NIL++ + + K+SD+G+S ++E+ P+A Y
Sbjct: 142 SGMKYLSDM---SAVHRDLAARNILVNSNLVCKVSDFGMSRVLEDD---------PEAAY 189
Query: 618 ----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
G + I T+ E + ++ DV+++G ++ E +
Sbjct: 190 TTRGGKIPIRWTAPEAIA----YRKFTSASDVWSYGIVMWEVM 228
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 122/286 (42%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
+G G G++Y+G + + VA+++L FLK+ ++ + +++HP+L
Sbjct: 19 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 69
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V LLG C + +++ E++ G+ +L E C + L + ++
Sbjct: 70 VQLLGVC--------TREPPFYIIIEFMTYGNLLDYLRE-CNRQEVSAVVLLYMATQISS 120
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
A+ +L +F +R L N L+ E+ + K++D+G+S +M G+ A
Sbjct: 121 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTXTAHA 168
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
G F + +A + + ++ DV+ FG +L E + G ++ +
Sbjct: 169 GAKFPIKWTAPESLAY---NKFSIKSDVWAFGVLLWEIATYGMSPYPG----IDPSQVYE 221
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+ R+ P C ++ V + C PS RPSF ++
Sbjct: 222 LLEKDYRMERP---EGCPEK----VYELMRACWQWNPSDRPSFAEI 260
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
+G G G++Y+G + + VA+++L FLK+ ++ + +++HP+L
Sbjct: 228 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 278
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V LLG C + +++ E++ G+ +L E C + L + ++
Sbjct: 279 VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVSAVVLLYMATQISS 329
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
A+ +L +F +R L N L+ E+ + K++D+G+S +M G+ A
Sbjct: 330 AMEYLEKK----NFIHRNLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 377
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
G F + +A + + ++ DV+ FG +L E + G L+++
Sbjct: 378 GAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 432
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+D R + C ++ V + C PS RPSF ++
Sbjct: 433 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 469
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
+G G G++Y+G + + VA+++L FLK+ ++ + +++HP+L
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 73
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V LLG C + +++ E++ G+ +L E C + L + ++
Sbjct: 74 VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 124
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
A+ +L +F +R L N L+ E+ + K++D+G+S +M G+ A
Sbjct: 125 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 172
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
G F + +A + + ++ DV+ FG +L E + G L+++
Sbjct: 173 GAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 227
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+D R + C ++ V + C PS RPSF ++
Sbjct: 228 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 264
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 117 LSSLELLDMSSNFLFGAI-PSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS 175
L+ LE LD+S N + P+ L L TL +D + P + L+ L L L+
Sbjct: 78 LTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 176 NQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKG 235
N L+ ++ + LT + + N + +P+ A LH LD
Sbjct: 138 NNLQALPDNTFRDLGNLTHLFLHGNRIP-SVPE-HAFRGLHSLD---------------- 179
Query: 236 LVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
+LL +N + P F +L +L L L N+LS +P VL L ++ YL L N
Sbjct: 180 --RLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 7/173 (4%)
Query: 133 AIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATL 192
A+P+GI Q + + N + S NLT+L L SN L G ++ + L
Sbjct: 24 AVPTGIP--ASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLL 81
Query: 193 TDIAMSNN-ELSGKLP-DMSALTSLHVLDLRENKLDSGLPLMPKGLVT---VLLSRNLFS 247
+ +S+N +L P L LH L L L P + +GL + L N
Sbjct: 82 EQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ 141
Query: 248 GAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPK 300
F +L L HL L N + +P L ++ L L N ++ P
Sbjct: 142 ALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPH 194
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 47/240 (19%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVR 486
+ +EL + D + +G G G++ GRL+ VAI++L Y+ K R
Sbjct: 38 FAKELDATNISIDKV--VGAGEFGEVCSGRLKLPSKKEISVAIKTLKV--GYT---EKQR 90
Query: 487 LDFLS------KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
DFL + HP+++ L G +S V +V E + NGS + L ++
Sbjct: 91 RDFLGEASIMGQFDHPNIIRLEGVVTKS--------KPVMIVTEXMENGSLDSFLRKHDA 142
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ + + +L G+A + +L G L NIL++ + + K+SD+G+S ++
Sbjct: 143 QFTV--IQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLSRVL 197
Query: 601 EEHEKLEAKGEGPKARY----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
E+ P+A Y G + I TS E + ++ DV+++G +L E +
Sbjct: 198 EDD---------PEAAYTTRGGKIPIRWTSPEAIA----YRKFTSASDVWSYGIVLWEVM 244
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
+G G G++Y+G + + VA+++L FLK+ ++ + +++HP+L
Sbjct: 225 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 275
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V LLG C + +++ E++ G+ +L E C + L + ++
Sbjct: 276 VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 326
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
A+ +L +F +R L N L+ E+ + K++D+G+S +M G+ A
Sbjct: 327 AMEYLEKK----NFIHRNLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 374
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
G F + +A + + ++ DV+ FG +L E + G L+++
Sbjct: 375 GAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 429
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+D R + C ++ V + C PS RPSF ++
Sbjct: 430 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 466
>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain
pdb|4GT4|B Chain B, Structure Of Unliganded, Inactive Ror2 Kinase Domain
Length = 308
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/298 (20%), Positives = 120/298 (40%), Gaps = 56/298 (18%)
Query: 448 MGEGSRGKLYKGRL------ENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQHPHLVS 500
+GE GK+YKG L E VAI++L + + + + ++LQHP++V
Sbjct: 34 LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 93
Query: 501 LLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP-------------ENVLKWS 547
LLG + + +++ Y +G L P ++ L+
Sbjct: 94 LLGVV--------TKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPP 145
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI--SIIMEEHEK 605
D + ++ +A + +L S + L T N+L+ + K+SD G+ + ++ K
Sbjct: 146 DFVHLVAQIAAGMEYLSSHHV---VHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYK 202
Query: 606 LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG 665
L L R A ++ + ++ D++++G +L E
Sbjct: 203 LLGNS---------LLPIRWMAPEAIM---YGKFSIDSDIWSYGVVLWEVF--------- 241
Query: 666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
++ L + +QD I + VL C + + V ++ +C PS RP F+D+
Sbjct: 242 -SYGLQPYCGYSNQDVVEMIRNRQVL-PCPDDCPAWVYALMIECWNEFPSRRPRFKDI 297
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 20/225 (8%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
+N L +G G G +YKG L+ VA++ +F + + N K + + ++H ++
Sbjct: 13 DNLKLLELIGRGRYGAVYKGSLDERP-VAVKVFSFANRQNFINEK-NIYRVPLMEHDNIA 70
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKA 559
+ + + LV EY PNGS +LS + + W + V +
Sbjct: 71 RFI---VGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSD----WVSSCRLAHSVTRG 123
Query: 560 VHFLHSSVISG-----SFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGP 613
+ +LH+ + G + S+R L + N+L+ +SD+G+S+ + + +L GE
Sbjct: 124 LAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGN-RLVRPGEED 182
Query: 614 KARYGFLFICRTSA----ENVVIVVDIQRTKLEDDVYNFGFILLE 654
A + R A E V + D + + D+Y G I E
Sbjct: 183 NAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWE 227
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
+G G G++Y+G + + VA+++L FLK+ ++ + +++HP+L
Sbjct: 22 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 72
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V LLG C + +++ E++ G+ +L E C + L + ++
Sbjct: 73 VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 123
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
A+ +L +F +R L N L+ E+ + K++D+G+S +M G+ A
Sbjct: 124 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAPA 171
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
G F + +A + + ++ DV+ FG +L E + G L+++
Sbjct: 172 GAKFPIKWTAPESLAY---NKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 226
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+D R + C ++ V + C PS RPSF ++
Sbjct: 227 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 263
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 117/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
+G G G +Y G L + + A++SL + + + HP+++SLL
Sbjct: 97 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 156
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G C+ S +V Y+ +G R + +K D + + VAK + F
Sbjct: 157 GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKF 207
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
L S F +R L N +LDE K++D+G++ M + E ++ A+ +
Sbjct: 208 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE-FDSVHNKTGAKLPVKW 262
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
+ S + Q+ + DV++FG +L E + P + T +LL
Sbjct: 263 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 312
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
RR++ P C +++ KC P+ RPSF +++
Sbjct: 313 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 347
>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated
Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2
Chain)
Length = 276
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 32/177 (18%)
Query: 448 MGEGSRGKLYKGRLE-NGTYVAIRSLTFLK----------KYSIQNLKVRLDFLSKLQHP 496
+G G+ GK+ G + G VA++ L K K IQNLK+ +HP
Sbjct: 19 LGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKL-------FRHP 71
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGV 556
H++ L Q S F+V EY+ G ++ C ++ + + +
Sbjct: 72 HIIKLY--------QVISTPTDFFMVMEYVSGGELFDYI---CKHGRVEEMEARRLFQQI 120
Query: 557 AKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGP 613
AV + H ++ L N+LLD H AK++D+G+S +M + E L P
Sbjct: 121 LSAVDYCHRHMV---VHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSP 174
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 108/250 (43%), Gaps = 43/250 (17%)
Query: 411 RLISQAVKLGTQGSPA--YRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVA 468
RLI V GT + YR+ + +KE L +G+G G + G G VA
Sbjct: 166 RLIKPKVMEGTVAAQDEFYRSGWALNMKE----LKLLQTIGKGEFGDVMLGDY-RGNKVA 220
Query: 469 IRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPN 528
++ + + Q +++L+H +LV LLG +E +++V EY+
Sbjct: 221 VKCIK--NDATAQAFLAEASVMTQLRHSNLVQLLGVIVE-------EKGGLYIVTEYMAK 271
Query: 529 GSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHR 587
GS +L +VL L + V +A+ +L + +F +R L N+L+ E
Sbjct: 272 GSLVDYLRSR-GRSVLGGDCLLKFSLDVCEAMEYLEGN----NFVHRDLAARNVLVSEDN 326
Query: 588 IAKLSDYGISI---IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDD 644
+AK+SD+G++ ++ KL K P+A + ++ + D
Sbjct: 327 VAKVSDFGLTKEASSTQDTGKLPVKWTAPEA------------------LREKKFSTKSD 368
Query: 645 VYNFGFILLE 654
V++FG +L E
Sbjct: 369 VWSFGILLWE 378
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 117/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
+G G G +Y G L + + A++SL + + + HP+++SLL
Sbjct: 38 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 97
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G C+ S +V Y+ +G R + +K D + + VAK + F
Sbjct: 98 GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKF 148
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
L S F +R L N +LDE K++D+G++ M + E ++ A+ +
Sbjct: 149 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE-FDSVHNKTGAKLPVKW 203
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
+ S + Q+ + DV++FG +L E + P + T +LL
Sbjct: 204 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 253
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
RR++ P C +++ KC P+ RPSF +++
Sbjct: 254 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 288
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 123/296 (41%), Gaps = 40/296 (13%)
Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRL 487
+ ++ +E + + +G G G+++ G T VA++SL S
Sbjct: 10 KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEA 68
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKW 546
+ + +LQH LV L + ++++ EY+ NGS L P + L
Sbjct: 69 NLMKQLQHQRLVRLYAVVTQE---------PIYIITEYMENGSLVDFL--KTPSGIKLTI 117
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ L + +A+ + F+ ++ +R L NIL+ + K++D+G++ ++E++E
Sbjct: 118 NKLLDMAAQIAEGMAFIEER----NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEX 173
Query: 606 LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG 665
AR G F + +A ++ ++ DV++FG +L E + + G
Sbjct: 174 --------TAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG 222
Query: 666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
+ N + G R+V P C +E + + C P RP+F+
Sbjct: 223 ---MTNPEVIQNLERG-YRMVRP---DNCPEE----LYQLMRLCWKERPEDRPTFD 267
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
+G G G++Y+G + + VA+++L FLK+ ++ + +++HP+L
Sbjct: 267 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 317
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V LLG C + +++ E++ G+ +L E C + L + ++
Sbjct: 318 VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 368
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
A+ +L +F +R L N L+ E+ + K++D+G+S +M G+ A
Sbjct: 369 AMEYLEKK----NFIHRNLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAHA 416
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
G F + +A + + ++ DV+ FG +L E + G L+++
Sbjct: 417 GAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 471
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+D R + C ++ V + C PS RPSF ++
Sbjct: 472 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 508
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 117/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
+G G G +Y G L + + A++SL + + + HP+++SLL
Sbjct: 38 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 97
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G C+ S +V Y+ +G R + +K D + + VAK + F
Sbjct: 98 GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKF 148
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
L S F +R L N +LDE K++D+G++ M + E ++ A+ +
Sbjct: 149 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE-FDSVHNKTGAKLPVKW 203
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
+ S + Q+ + DV++FG +L E + P + T +LL
Sbjct: 204 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 253
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
RR++ P C +++ KC P+ RPSF +++
Sbjct: 254 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 288
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 117/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
+G G G +Y G L + + A++SL + + + HP+++SLL
Sbjct: 43 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 102
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G C+ S +V Y+ +G R + +K D + + VAK + F
Sbjct: 103 GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKF 153
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
L S F +R L N +LDE K++D+G++ M + E ++ A+ +
Sbjct: 154 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE-FDSVHNKTGAKLPVKW 208
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
+ S + Q+ + DV++FG +L E + P + T +LL
Sbjct: 209 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 258
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
RR++ P C +++ KC P+ RPSF +++
Sbjct: 259 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 293
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 117/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
+G G G +Y G L + + A++SL + + + HP+++SLL
Sbjct: 36 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 95
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G C+ S +V Y+ +G R + +K D + + VAK + F
Sbjct: 96 GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKF 146
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
L S F +R L N +LDE K++D+G++ M + E ++ A+ +
Sbjct: 147 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE-FDSVHNKTGAKLPVKW 201
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
+ S + Q+ + DV++FG +L E + P + T +LL
Sbjct: 202 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 251
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
RR++ P C +++ KC P+ RPSF +++
Sbjct: 252 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 286
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 16/163 (9%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKG-RLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ 494
K+ FD L +GEGS G +YK E G VAI+ + + +Q + + + +
Sbjct: 25 KQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPV--ESDLQEIIKEISIMQQCD 82
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
PH+V G + NT+ +++V EY GS + L + IL
Sbjct: 83 SPHVVKYYGSYFK-------NTD-LWIVMEYCGAGSVSDII--RLRNKTLTEDEIATILQ 132
Query: 555 GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
K + +LH + NILL+ AKL+D+G++
Sbjct: 133 STLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVA 172
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 12/187 (6%)
Query: 114 IHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL 173
+ +L++LE L ++N + P GI L L L+++ N D SL+NLT L L
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 246
Query: 174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMP 233
+NQ+ P + + LT++ + N++S P ++ LT+L L+L EN+L+ P+
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISN 303
Query: 234 -KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
K L + L N S P L +LQ L N +S + S L +L NI++L N
Sbjct: 304 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN 359
Query: 293 MLSGTLP 299
+S P
Sbjct: 360 QISDLTP 366
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
+G G G++Y+G + + VA+++L FLK+ ++ + +++HP+L
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 73
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V LLG C + +++ E++ G+ +L E C + L + ++
Sbjct: 74 VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVNAVVLLYMATQISS 124
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
A+ +L +F +R L N L+ E+ + K++D+G+S +M G+ A
Sbjct: 125 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTYTAPA 172
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
G F + +A + + ++ DV+ FG +L E + G L+++
Sbjct: 173 GAKFPIKWTAPESLAY---NKFSIKSDVWAFGVLLWEIATYGMSPYPG--IDLSQVYELL 227
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+D R + C ++ V + C PS RPSF ++
Sbjct: 228 EKDYRMERPE-----GCPEK----VYELMRACWQWNPSDRPSFAEI 264
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 117/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
+G G G +Y G L + + A++SL + + + HP+++SLL
Sbjct: 39 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 98
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G C+ S +V Y+ +G R + +K D + + VAK + F
Sbjct: 99 GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKF 149
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
L S F +R L N +LDE K++D+G++ M + E ++ A+ +
Sbjct: 150 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE-FDSVHNKTGAKLPVKW 204
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
+ S + Q+ + DV++FG +L E + P + T +LL
Sbjct: 205 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 254
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
RR++ P C +++ KC P+ RPSF +++
Sbjct: 255 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 289
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 12/187 (6%)
Query: 114 IHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL 173
+ +L++LE L ++N + P GI L L L+++ N D SL+NLT L L
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 246
Query: 174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMP 233
+NQ+ P + + LT++ + N++S P ++ LT+L L+L EN+L+ P+
Sbjct: 247 ANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISN 303
Query: 234 -KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
K L + L N S P L +LQ L N +S + S L +L NI++L N
Sbjct: 304 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN 359
Query: 293 MLSGTLP 299
+S P
Sbjct: 360 QISDLTP 366
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/302 (20%), Positives = 124/302 (41%), Gaps = 40/302 (13%)
Query: 422 QGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQ 481
Q + ++ +E + + +G G G+++ G T VA++SL S
Sbjct: 1 QTQKPQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPD 59
Query: 482 NLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE 541
+ + +LQH LV L + ++++ EY+ NGS L P
Sbjct: 60 AFLAEANLMKQLQHQRLVRLYAVVTQE---------PIYIITEYMENGSLVDFL--KTPS 108
Query: 542 NV-LKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISII 599
+ L + L + +A+ + F+ ++ +R L NIL+ + K++D+G++ +
Sbjct: 109 GIKLTINKLLDMAAQIAEGMAFIEER----NYIHRDLRAANILVSDTLSCKIADFGLARL 164
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+E++E AR G F + +A ++ ++ DV++FG +L E +
Sbjct: 165 IEDNEX--------TAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLTEIVTHG 213
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ G + N + G R+V P C +E + + C P RP+
Sbjct: 214 RIPYPG---MTNPEVIQNLERG-YRMVRP---DNCPEE----LYQLMRLCWKERPEDRPT 262
Query: 720 FE 721
F+
Sbjct: 263 FD 264
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 12/187 (6%)
Query: 114 IHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL 173
+ +L++LE L ++N + P GI L L L+++ N D SL+NLT L L
Sbjct: 195 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 250
Query: 174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMP 233
+NQ+ P + + LT++ + N++S P ++ LT+L L+L EN+L+ P+
Sbjct: 251 ANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISN 307
Query: 234 -KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
K L + L N S P L +LQ L N +S + S L +L NI++L N
Sbjct: 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN 363
Query: 293 MLSGTLP 299
+S P
Sbjct: 364 QISDLTP 370
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 122/286 (42%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
+G G G++Y+G + + VA+++L FLK+ ++ + +++HP+L
Sbjct: 19 LGGGQFGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 69
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V LLG C + +++ E++ G+ +L E C + L + ++
Sbjct: 70 VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVSAVVLLYMATQISS 120
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
A+ +L +F +R L N L+ E+ + K++D+G+S +M G+ A
Sbjct: 121 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTXTAHA 168
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
G F + +A + + ++ DV+ FG +L E + G ++ +
Sbjct: 169 GAKFPIKWTAPESLA---YNKFSIKSDVWAFGVLLWEIATYGMSPYPG----IDPSQVYE 221
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+ R+ P C ++ V + C PS RPSF ++
Sbjct: 222 LLEKDYRMERP---EGCPEK----VYELMRACWQWNPSDRPSFAEI 260
>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human
5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant
(T172d)
pdb|3AQV|A Chain A, Human Amp-Activated Protein Kinase Alpha 2 Subunit Kinase
Domain (T172d) Complexed With Compound C
Length = 276
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 32/171 (18%)
Query: 448 MGEGSRGKLYKGRLE-NGTYVAIRSLTFLK----------KYSIQNLKVRLDFLSKLQHP 496
+G G+ GK+ G + G VA++ L K K IQNLK+ +HP
Sbjct: 19 LGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKL-------FRHP 71
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGV 556
H++ L Q S F+V EY+ G ++ C ++ + + +
Sbjct: 72 HIIKLY--------QVISTPTDFFMVMEYVSGGELFDYI---CKHGRVEEMEARRLFQQI 120
Query: 557 AKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLE 607
AV + H ++ L N+LLD H AK++D+G+S +M + E L
Sbjct: 121 LSAVDYCHRHMV---VHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLR 168
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 123/296 (41%), Gaps = 40/296 (13%)
Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRL 487
+ ++ +E + + +G G G+++ G T VA++SL S
Sbjct: 3 KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEA 61
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKW 546
+ + +LQH LV L + ++++ EY+ NGS L P + L
Sbjct: 62 NLMKQLQHQRLVRLYAVVTQE---------PIYIITEYMENGSLVDFLK--TPSGIKLTI 110
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ L + +A+ + F+ ++ +R L NIL+ + K++D+G++ ++E++E
Sbjct: 111 NKLLDMAAQIAEGMAFIEER----NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEX 166
Query: 606 LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG 665
AR G F + +A ++ ++ DV++FG +L E + + G
Sbjct: 167 --------TAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG 215
Query: 666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
+ N + G R+V P C +E + + C P RP+F+
Sbjct: 216 ---MTNPEVIQNLERG-YRMVRP---DNCPEE----LYQLMRLCWKERPEDRPTFD 260
>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|B Chain B, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 308
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 87/176 (49%), Gaps = 23/176 (13%)
Query: 435 LKEATNNFDSLSFMGEGSRGKLYKGR-LEN-GTYVAIRSLTF------LKKYSIQNLKVR 486
L A ++ ++ +GEG+ GK++K R L+N G +VA++ + + +I+ + V
Sbjct: 6 LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAV- 64
Query: 487 LDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG--SYRAHLSE-NCPENV 543
L L +HP++V L C + S+ D T K+ LV+E++ +Y + E P
Sbjct: 65 LRHLETFEHPNVVRLFDVC--TVSRTDRET-KLTLVFEHVDQDLTTYLDKVPEPGVPTET 121
Query: 544 LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+K ++ + + + FLHS + L NIL+ KL+D+G++ I
Sbjct: 122 IK-----DMMFQLLRGLDFLHSHRV---VHRDLKPQNILVTSSGQIKLADFGLARI 169
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 123/296 (41%), Gaps = 40/296 (13%)
Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRL 487
+ ++ +E + + +G G G+++ G T VA++SL S
Sbjct: 1 KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEA 59
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKW 546
+ + +LQH LV L + ++++ EY+ NGS L P + L
Sbjct: 60 NLMKQLQHQRLVRLYAVVTQE---------PIYIITEYMENGSLVDFL--KTPSGIKLTI 108
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ L + +A+ + F+ ++ +R L NIL+ + K++D+G++ ++E++E
Sbjct: 109 NKLLDMAAQIAEGMAFIEER----NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEX 164
Query: 606 LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG 665
AR G F + +A ++ ++ DV++FG +L E + + G
Sbjct: 165 --------TAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG 213
Query: 666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
+ N + G R+V P C +E + + C P RP+F+
Sbjct: 214 ---MTNPEVIQNLERG-YRMVRP---DNCPEE----LYQLMRLCWKERPEDRPTFD 258
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 12/187 (6%)
Query: 114 IHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSL 173
+ +L++LE L ++N + P GI L L L+++ N D SL+NLT L L
Sbjct: 190 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 245
Query: 174 KSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMP 233
+NQ+ P + + LT++ + N++S P ++ LT+L L+L EN+L+ P+
Sbjct: 246 ANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISN 302
Query: 234 -KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
K L + L N S P L +LQ L N +S + S L +L NI++L N
Sbjct: 303 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN 358
Query: 293 MLSGTLP 299
+S P
Sbjct: 359 QISDLTP 365
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 93/208 (44%), Gaps = 26/208 (12%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G G G+++ G N T VA+++L S+Q + + LQH LV L
Sbjct: 20 LGAGQFGEVWMGYYNNSTKVAVKTLK-PGTMSVQAFLEEANLMKTLQHDKLVRLYAVV-- 76
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
+ ++++ E++ GS L + VL L LI + + + +
Sbjct: 77 ------TKEEPIYIITEFMAKGSLLDFLKSDEGGKVL-----LPKLIDFSAQIAEGMAYI 125
Query: 568 ISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTS 626
++ +R L N+L+ E + K++D+G++ ++E++E AR G F + +
Sbjct: 126 ERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEY--------TAREGAKFPIKWT 177
Query: 627 AENVVIVVDIQRTKLEDDVYNFGFILLE 654
A ++ ++ +V++FG +L E
Sbjct: 178 APE---AINFGCFTIKSNVWSFGILLYE 202
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 115/276 (41%), Gaps = 40/276 (14%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G G G+++ G T VA++SL S + + +LQH LV L +
Sbjct: 21 LGAGQAGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 79
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKWSDRLAILIGVAKAVHFLHSS 566
++++ EY+ NGS L P + L + L + +A+ + F+
Sbjct: 80 E---------PIYIITEYMENGSLVDFL--KTPSGIKLTINKLLDMAAQIAEGMAFIEER 128
Query: 567 VISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRT 625
++ +R L NIL+ + K++D+G++ ++E+ E AR G F +
Sbjct: 129 ----NYIHRDLRAANILVSDTLSCKIADFGLARLIEDAEX--------TAREGAKFPIKW 176
Query: 626 SAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRI 685
+A ++ ++ DV++FG +L E + + G + N + G R+
Sbjct: 177 TAPE---AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG---MTNPEVIQNLERG-YRM 229
Query: 686 VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
V P C +E + + C P RP+F+
Sbjct: 230 VRP---DNCPEE----LYQLMRLCWKERPEDRPTFD 258
>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|C Chain C, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI7|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
pdb|1BLX|A Chain A, P19ink4dCDK6 COMPLEX
pdb|1G3N|A Chain A, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|E Chain E, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 326
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 87/173 (50%), Gaps = 17/173 (9%)
Query: 435 LKEATNNFDSLSFMGEGSRGKLYKGR-LEN-GTYVAIRSLTF------LKKYSIQNLKVR 486
L A ++ ++ +GEG+ GK++K R L+N G +VA++ + + +I+ + V
Sbjct: 6 LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAV- 64
Query: 487 LDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKW 546
L L +HP++V L C + S+ D T K+ LV+E++ + +L + PE +
Sbjct: 65 LRHLETFEHPNVVRLFDVC--TVSRTDRET-KLTLVFEHV-DQDLTTYL-DKVPEPGVPT 119
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
++ + + + FLHS + L NIL+ KL+D+G++ I
Sbjct: 120 ETIKDMMFQLLRGLDFLHSHRV---VHRDLKPQNILVTSSGQIKLADFGLARI 169
>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|3NUX|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|4AUA|A Chain A, Liganded X-ray Crystal Structure Of Cyclin Dependent
Kinase 6 (cdk6)
pdb|4EZ5|A Chain A, Cdk6 (monomeric) In Complex With Inhibitor
Length = 307
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 87/176 (49%), Gaps = 23/176 (13%)
Query: 435 LKEATNNFDSLSFMGEGSRGKLYKGR-LEN-GTYVAIRSLTF------LKKYSIQNLKVR 486
L A ++ ++ +GEG+ GK++K R L+N G +VA++ + + +I+ + V
Sbjct: 6 LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAV- 64
Query: 487 LDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG--SYRAHLSE-NCPENV 543
L L +HP++V L C + S+ D T K+ LV+E++ +Y + E P
Sbjct: 65 LRHLETFEHPNVVRLFDVC--TVSRTDRET-KLTLVFEHVDQDLTTYLDKVPEPGVPTET 121
Query: 544 LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+K ++ + + + FLHS + L NIL+ KL+D+G++ I
Sbjct: 122 IK-----DMMFQLLRGLDFLHSHRV---VHRDLKPQNILVTSSGQIKLADFGLARI 169
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 117/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
+G G G +Y G L + + A++SL + + + HP+++SLL
Sbjct: 39 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 98
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G C+ S +V Y+ +G R + +K D + + VAK + F
Sbjct: 99 GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKF 149
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
L S F +R L N +LDE K++D+G++ M + E ++ A+ +
Sbjct: 150 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMLDKE-FDSVHNKTGAKLPVKW 204
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
+ S + Q+ + DV++FG +L E + P + T +LL
Sbjct: 205 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 254
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
RR++ P C +++ KC P+ RPSF +++
Sbjct: 255 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 289
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 123/296 (41%), Gaps = 40/296 (13%)
Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRL 487
+ ++ +E + + +G G G+++ G T VA++SL S
Sbjct: 2 KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEA 60
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKW 546
+ + +LQH LV L + ++++ EY+ NGS L P + L
Sbjct: 61 NLMKQLQHQRLVRLYAVVTQE---------PIYIITEYMENGSLVDFLK--TPSGIKLTI 109
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ L + +A+ + F+ ++ +R L NIL+ + K++D+G++ ++E++E
Sbjct: 110 NKLLDMAAQIAEGMAFIEER----NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEX 165
Query: 606 LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG 665
AR G F + +A ++ ++ DV++FG +L E + + G
Sbjct: 166 --------TAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG 214
Query: 666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
+ N + G R+V P C +E + + C P RP+F+
Sbjct: 215 ---MTNPEVIQNLERG-YRMVRP---DNCPEE----LYQLMRLCWKERPEDRPTFD 259
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 123/296 (41%), Gaps = 40/296 (13%)
Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRL 487
+ ++ +E + + +G G G+++ G T VA++SL S
Sbjct: 1 KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEA 59
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKW 546
+ + +LQH LV L + ++++ EY+ NGS L P + L
Sbjct: 60 NLMKQLQHQRLVRLYAVVTQE---------PIYIITEYMENGSLVDFLK--TPSGIKLTI 108
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ L + +A+ + F+ ++ +R L NIL+ + K++D+G++ ++E++E
Sbjct: 109 NKLLDMAAQIAEGMAFIEER----NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEX 164
Query: 606 LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG 665
AR G F + +A ++ ++ DV++FG +L E + + G
Sbjct: 165 --------TAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG 213
Query: 666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
+ N + G R+V P C +E + + C P RP+F+
Sbjct: 214 ---MTNPEVIQNLERG-YRMVRP---DNCPEE----LYQLMRLCWKERPEDRPTFD 258
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 34/177 (19%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTF---------LKKYSIQNLKVRL 487
A N + +G+G G ++KGRL ++ + VAI+SL ++K+ Q + +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKF--QEFQREV 74
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS-YRAHLSENCPENVLKW 546
+S L HP++V L G N +V E++P G Y L + P +KW
Sbjct: 75 FIMSNLNHPNIVKLYGLM----------HNPPRMVMEFVPCGDLYHRLLDKAHP---IKW 121
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNIL---LDEHR--IAKLSDYGIS 597
S +L +++ +A + ++ + + +R L + NI LDE+ AK++D+G+S
Sbjct: 122 SVKLRLMLDIALGIEYMQNQ--NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLS 176
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
+G G G +Y G L + + A++SL + + + HP+++SLL
Sbjct: 56 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 115
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G C+ S +V Y+ +G R + +K D + + VAK + +
Sbjct: 116 GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKY 166
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
L S F +R L N +LDE K++D+G++ M + E + A+ +
Sbjct: 167 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK-TGAKLPVKW 221
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
+ S + Q+ + DV++FG +L E + P + T +LL
Sbjct: 222 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 271
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
RR++ P C +++ KC P+ RPSF +++
Sbjct: 272 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 306
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 122/286 (42%), Gaps = 54/286 (18%)
Query: 448 MGEGSRGKLYKGRLENGTY-VAIRSLT--------FLKKYSIQNLKVRLDFLSKLQHPHL 498
+G G G++Y+G + + VA+++L FLK+ ++ + +++HP+L
Sbjct: 19 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV---------MKEIKHPNL 69
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
V LLG C + +++ E++ G+ +L E C + L + ++
Sbjct: 70 VQLLGVC--------TREPPFYIITEFMTYGNLLDYLRE-CNRQEVSAVVLLYMATQISS 120
Query: 559 AVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
A+ +L +F +R L N L+ E+ + K++D+G+S +M G+ A
Sbjct: 121 AMEYLEKK----NFIHRDLAARNCLVGENHLVKVADFGLSRLM--------TGDTFTAHA 168
Query: 618 GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFG 677
G F + +A + + ++ DV+ FG +L E + G ++ +
Sbjct: 169 GAKFPIKWTAPESLAY---NKFSIKSDVWAFGVLLWEIATYGMSPYPG----IDPSQVYE 221
Query: 678 SQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
+ R+ P C ++ V + C PS RPSF ++
Sbjct: 222 LLEKDYRMERP---EGCPEK----VYELMRACWQWNPSDRPSFAEI 260
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/302 (20%), Positives = 124/302 (41%), Gaps = 40/302 (13%)
Query: 422 QGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQ 481
Q + ++ +E + + +G G G+++ G T VA++SL S
Sbjct: 1 QTQKPQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPD 59
Query: 482 NLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE 541
+ + +LQH LV L + ++++ EY+ NGS L P
Sbjct: 60 AFLAEANLMKQLQHQRLVRLYAVVTQE---------PIYIITEYMENGSLVDFL--KTPS 108
Query: 542 NV-LKWSDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISII 599
+ L + L + +A+ + F+ ++ +R L NIL+ + K++D+G++ +
Sbjct: 109 GIKLTINKLLDMAAQIAEGMAFIEER----NYIHRDLRAANILVSDTLSCKIADFGLARL 164
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+E++E AR G F + +A ++ ++ DV++FG +L E +
Sbjct: 165 IEDNEY--------TAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLTEIVTHG 213
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ G + N + G R+V P C +E + + C P RP+
Sbjct: 214 RIPYPG---MTNPEVIQNLERG-YRMVRP---DNCPEE----LYQLMRLCWKERPEDRPT 262
Query: 720 FE 721
F+
Sbjct: 263 FD 264
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 123/296 (41%), Gaps = 40/296 (13%)
Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRL 487
+ ++ +E + + +G G G+++ G T VA++SL S
Sbjct: 11 KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEA 69
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKW 546
+ + +LQH LV L + ++++ EY+ NGS L P + L
Sbjct: 70 NLMKQLQHQRLVRLYAVVTQE---------PIYIITEYMENGSLVDFL--KTPSGIKLTI 118
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ L + +A+ + F+ ++ +R L NIL+ + K++D+G++ ++E++E
Sbjct: 119 NKLLDMAAQIAEGMAFIEER----NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY 174
Query: 606 LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG 665
AR G F + +A ++ ++ DV++FG +L E + + G
Sbjct: 175 --------TAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG 223
Query: 666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
+ N + G R+V P C +E + + C P RP+F+
Sbjct: 224 ---MTNPEVIQNLERG-YRMVRP---DNCPEE----LYQLMRLCWKERPEDRPTFD 268
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
+G G G +Y G L + + A++SL + + + HP+++SLL
Sbjct: 57 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 116
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G C+ S +V Y+ +G R + +K D + + VAK + +
Sbjct: 117 GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKY 167
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
L S F +R L N +LDE K++D+G++ M + E + A+ +
Sbjct: 168 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT-GAKLPVKW 222
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
+ S + Q+ + DV++FG +L E + P + T +LL
Sbjct: 223 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 272
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
RR++ P C +++ KC P+ RPSF +++
Sbjct: 273 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 307
>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In
Complex With An Mk-2461 Analog With Specificity For The
Activated Receptor
pdb|3R7O|A Chain A, Structure Of Dually Phosphorylated C-Met Receptor Kinase
In Complex With An Mk-2461 Analog
Length = 307
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
+G G G +Y G L + + A++SL + + + HP+++SLL
Sbjct: 37 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 96
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G C+ S +V Y+ +G R + +K D + + VAK + +
Sbjct: 97 GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKY 147
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
L S F +R L N +LDE K++D+G++ M + E + A+ +
Sbjct: 148 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEXXSVHNK-TGAKLPVKW 202
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
+ S + Q+ + DV++FG +L E + P + T +LL
Sbjct: 203 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 252
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
RR++ P C +++ KC P+ RPSF +++
Sbjct: 253 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 287
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 123/296 (41%), Gaps = 40/296 (13%)
Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRL 487
+ ++ +E + + +G G G+++ G T VA++SL S
Sbjct: 6 KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEA 64
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKW 546
+ + +LQH LV L + ++++ EY+ NGS L P + L
Sbjct: 65 NLMKQLQHQRLVRLYAVVTQE---------PIYIITEYMENGSLVDFL--KTPSGIKLTI 113
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ L + +A+ + F+ ++ +R L NIL+ + K++D+G++ ++E++E
Sbjct: 114 NKLLDMAAQIAEGMAFIEER----NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY 169
Query: 606 LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG 665
AR G F + +A ++ ++ DV++FG +L E + + G
Sbjct: 170 --------TAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG 218
Query: 666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
+ N + G R+V P C +E + + C P RP+F+
Sbjct: 219 ---MTNPEVIQNLERG-YRMVRP---DNCPEE----LYQLMRLCWKERPEDRPTFD 263
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 112/275 (40%), Gaps = 38/275 (13%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G G G+++ G T VA++SL S + + +LQH LV L +
Sbjct: 17 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 75
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKWSDRLAILIGVAKAVHFLHSS 566
++++ EY+ NGS L P + L + L + +A+ + F+
Sbjct: 76 E---------PIYIITEYMENGSLVDFLK--TPSGIKLTINKLLDMAAQIAEGMAFIEER 124
Query: 567 VISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTS 626
L NIL+ + K++D+G++ ++E++E AR G F + +
Sbjct: 125 ---NYIHRNLRAANILVSDTLSCKIADFGLARLIEDNEY--------TAREGAKFPIKWT 173
Query: 627 AENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIV 686
A ++ ++ DV++FG +L E + + G + N + G R+V
Sbjct: 174 APE---AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG---MTNPEVIQNLERG-YRMV 226
Query: 687 DPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
P C +E + + C P RP+F+
Sbjct: 227 RP---DNCPEE----LYQLMRLCWKERPEDRPTFD 254
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
+G G G +Y G L + + A++SL + + + HP+++SLL
Sbjct: 30 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 89
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G C+ S +V Y+ +G R + +K D + + VAK + +
Sbjct: 90 GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKY 140
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
L S F +R L N +LDE K++D+G++ M + E + A+ +
Sbjct: 141 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK-TGAKLPVKW 195
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
+ S + Q+ + DV++FG +L E + P + T +LL
Sbjct: 196 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 245
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
RR++ P C +++ KC P+ RPSF +++
Sbjct: 246 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 280
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
+G G G +Y G L + + A++SL + + + HP+++SLL
Sbjct: 35 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 94
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G C+ S +V Y+ +G R + +K D + + VAK + +
Sbjct: 95 GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKY 145
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
L S F +R L N +LDE K++D+G++ M + E + A+ +
Sbjct: 146 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK-TGAKLPVKW 200
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
+ S + Q+ + DV++FG +L E + P + T +LL
Sbjct: 201 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 250
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
RR++ P C +++ KC P+ RPSF +++
Sbjct: 251 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 285
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/296 (20%), Positives = 123/296 (41%), Gaps = 40/296 (13%)
Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRL 487
+ ++ +E + + +G G G+++ G T VA++SL S
Sbjct: 1 KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEA 59
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKW 546
+ + +LQH LV L + ++++ EY+ NGS L P + L
Sbjct: 60 NLMKQLQHQRLVRLYAVVTQE---------PIYIITEYMENGSLVDFLK--TPSGIKLTI 108
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ L + +A+ + F+ ++ +R L NIL+ + K++D+G++ ++E++E
Sbjct: 109 NKLLDMAAQIAEGMAFIEER----NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY 164
Query: 606 LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKG 665
AR G F + +A ++ ++ DV++FG +L E + + G
Sbjct: 165 --------TAREGAKFPIKWTAPE---AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG 213
Query: 666 EAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
+ N + G R+V P C +E + + C P RP+F+
Sbjct: 214 ---MTNPEVIQNLERG-YRMVRP---DNCPEE----LYQLMRLCWKERPEDRPTFD 258
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
+G G G +Y G L + + A++SL + + + HP+++SLL
Sbjct: 38 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 97
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G C+ S +V Y+ +G R + +K D + + VAK + +
Sbjct: 98 GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKY 148
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
L S F +R L N +LDE K++D+G++ M + E + A+ +
Sbjct: 149 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT-GAKLPVKW 203
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
+ S + Q+ + DV++FG +L E + P + T +LL
Sbjct: 204 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 253
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
RR++ P C +++ KC P+ RPSF +++
Sbjct: 254 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 288
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 128/304 (42%), Gaps = 55/304 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGRL--ENGTY---VAIRSL--TFLKKYSIQNLK 484
L LKE + +G G+ G +YKG E T VAI+ L T K +++ +
Sbjct: 32 LRILKE--TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMD 89
Query: 485 VRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV- 543
L ++ + HPHLV LLG C+ Q LV + +P+G ++ E+ +N+
Sbjct: 90 EAL-IMASMDHPHLVRLLGVCLSPTIQ---------LVTQLMPHGCLLEYVHEH-KDNIG 138
Query: 544 ----LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
L W + +AK + +L + L N+L+ K++D+G++ +
Sbjct: 139 SQLLLNWC------VQIAKGMMYLEERRL---VHRDLAARNVLVKSPNHVKITDFGLARL 189
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+E EK E +G K ++ + + ++ + DV+++G + E +
Sbjct: 190 LEGDEK-EYNADGGKMPIKWM---------ALECIHYRKFTHQSDVWSYGVTIWELMT-- 237
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
GK + + G R P+ C+ + ++V KC + SRP
Sbjct: 238 -FGGKPYDGIPTREIPDLLEKGERLPQPPI----CTIDVYMVMV----KCWMIDADSRPK 288
Query: 720 FEDV 723
F+++
Sbjct: 289 FKEL 292
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 120/280 (42%), Gaps = 34/280 (12%)
Query: 448 MGEGSRGKLYK-GRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCI 506
+G+G G+ K E G + ++ L + + + + + L+HP+++ +G
Sbjct: 18 LGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLY 77
Query: 507 ESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSS 566
+ D N + EYI G+ R + ++ WS R++ +A + +LHS
Sbjct: 78 K-----DKRLN---FITEYIKGGTLRGIIKSM--DSQYPWSQRVSFAKDIASGMAYLHSM 127
Query: 567 VISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKG----EGP--KARYGFL 620
I L ++N L+ E++ ++D+G++ +M + EK + +G + P K RY +
Sbjct: 128 NI---IHRDLNSHNCLVRENKNVVVADFGLARLMVD-EKTQPEGLRSLKKPDRKKRYTVV 183
Query: 621 FICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD 680
A +++ + + DV++FG +L E ++G + + L FG
Sbjct: 184 GNPYWMAPE---MINGRSYDEKVDVFSFGIVLCE-IIGRV---NADPDYLPRTMDFGLN- 235
Query: 681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
R +D C I V +C +P RPSF
Sbjct: 236 -VRGFLDRYCPPNCPPSFFPITV----RCCDLDPEKRPSF 270
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 116/276 (42%), Gaps = 40/276 (14%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G G G+++ G T VA++SL S + + +LQH LV L +
Sbjct: 16 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 74
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV-LKWSDRLAILIGVAKAVHFLHSS 566
++++ EY+ NGS L P + L + L + +A+ + F+
Sbjct: 75 E---------PIYIITEYMENGSLVDFL--KTPSGIKLTINKLLDMAAQIAEGMAFIEER 123
Query: 567 VISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRT 625
++ +R L NIL+ + K++D+G++ ++E++E AR G F +
Sbjct: 124 ----NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY--------TAREGAKFPIKW 171
Query: 626 SAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRI 685
+A ++ ++ DV++FG +L E + + G + N + G R+
Sbjct: 172 TAPE---AINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG---MTNPEVIQNLERG-YRM 224
Query: 686 VDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
V P C +E + + C P RP+F+
Sbjct: 225 VRP---DNCPEE----LYQLMRLCWKERPEDRPTFD 253
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
+G G G +Y G L + + A++SL + + + HP+++SLL
Sbjct: 38 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 97
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G C+ S +V Y+ +G R + +K D + + VAK + +
Sbjct: 98 GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKY 148
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
L S F +R L N +LDE K++D+G++ M + E + A+ +
Sbjct: 149 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK-TGAKLPVKW 203
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
+ S + Q+ + DV++FG +L E + P + T +LL
Sbjct: 204 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 253
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
RR++ P C +++ KC P+ RPSF +++
Sbjct: 254 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 288
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
+G G G +Y G L + + A++SL + + + HP+++SLL
Sbjct: 36 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 95
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G C+ S +V Y+ +G R + +K D + + VAK + +
Sbjct: 96 GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKY 146
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
L S F +R L N +LDE K++D+G++ M + E + A+ +
Sbjct: 147 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK-TGAKLPVKW 201
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
+ S + Q+ + DV++FG +L E + P + T +LL
Sbjct: 202 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 251
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
RR++ P C +++ KC P+ RPSF +++
Sbjct: 252 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 286
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 88/213 (41%), Gaps = 21/213 (9%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G GS G +YKG+ V I + Q + + L K +H +++ +G+ +
Sbjct: 44 IGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK 103
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
+ + +V ++ S HL + E + + I A+ + +LH+
Sbjct: 104 ---------DNLAIVTQWCEGSSLYKHL--HVQETKFQMFQLIDIARQTAQGMDYLHAKN 152
Query: 568 ISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSA 627
I + +NNI L E K+ D+G++ + + + E P ++ A
Sbjct: 153 I---IHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQ-QVEQPTGSVLWM------A 202
Query: 628 ENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
V+ + D + DVY++G +L E + G +
Sbjct: 203 PEVIRMQDNNPFSFQSDVYSYGIVLYELMTGEL 235
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 112/280 (40%), Gaps = 43/280 (15%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G G+ G + K + VAI+ + + + V L LS++ HP++V L G C+
Sbjct: 17 VGRGAFGVVCKAKW-RAKDVAIKQIE--SESERKAFIVELRQLSRVNHPNIVKLYGACL- 72
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
N V LV EY GS L P + ++ + ++ V +LHS
Sbjct: 73 ---------NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQ 123
Query: 568 ISGSFSNRLTTNNILL-DEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTS 626
L N+LL + K+ D+G + ++ H KG ++
Sbjct: 124 PKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH-MTNNKG--------------SA 168
Query: 627 AENVVIVVDIQRTKLEDDVYNFGFILLESLV--GPIVTGKGEAFLLNEMASFGSQDGRRR 684
A V + + DV+++G IL E + P G AF + + +G R
Sbjct: 169 AWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRI----MWAVHNGTR- 223
Query: 685 IVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
P ++ + + S+ +C +PS RPS E+++
Sbjct: 224 ---PPLIKNLPKP----IESLMTRCWSKDPSQRPSMEEIV 256
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/281 (19%), Positives = 119/281 (42%), Gaps = 46/281 (16%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G G G+++ T VA++++ S++ + + LQH LV L H +
Sbjct: 23 LGAGQFGEVWMATYNKHTKVAVKTMK-PGSMSVEAFLAEANVMKTLQHDKLVKL--HAV- 78
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHL-----SENCPENVLKWSDRLAILIGVAKAVHF 562
++++ E++ GS L S+ ++ +S ++A + + ++
Sbjct: 79 ------VTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNY 132
Query: 563 LHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFI 622
+H L NIL+ + K++D+G++ ++E++E AR G F
Sbjct: 133 IHRD---------LRAANILVSASLVCKIADFGLARVIEDNEY--------TAREGAKFP 175
Query: 623 CRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGR 682
+ +A ++ ++ DV++FG +L+E + + G ++ + +
Sbjct: 176 IKWTAPE---AINFGSFTIKSDVWSFGILLMEIVTYGRIPYPG----MSNPEVIRALERG 228
Query: 683 RRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDV 723
R+ P C +E +I++ +C P RP+FE +
Sbjct: 229 YRMPRP---ENCPEELYNIMM----RCWKNRPEERPTFEYI 262
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 30/175 (17%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTF---------LKKYSIQNLKVRL 487
A N + +G+G G ++KGRL ++ + VAI+SL ++K+ Q + +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKF--QEFQREV 74
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS-YRAHLSENCPENVLKW 546
+S L HP++V L G N +V E++P G Y L + P +KW
Sbjct: 75 FIMSNLNHPNIVKLYGLM----------HNPPRMVMEFVPCGDLYHRLLDKAHP---IKW 121
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNIL--LDEHR--IAKLSDYGIS 597
S +L +++ +A + ++ + + + N L LDE+ AK++D+G S
Sbjct: 122 SVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGTS 176
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
+G G G +Y G L + + A++SL + + + HP+++SLL
Sbjct: 37 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 96
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G C+ S +V Y+ +G R + +K D + + VAK + +
Sbjct: 97 GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKY 147
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
L S F +R L N +LDE K++D+G++ M + E + A+ +
Sbjct: 148 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK-TGAKLPVKW 202
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
+ S + Q+ + DV++FG +L E + P + T +LL
Sbjct: 203 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 252
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
RR++ P C +++ KC P+ RPSF +++
Sbjct: 253 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 287
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 93/214 (43%), Gaps = 37/214 (17%)
Query: 445 LSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
L +G+G G + G G VA++ + + Q +++L+H +LV LLG
Sbjct: 17 LQTIGKGEFGDVMLGDY-RGNKVAVKCIK--NDATAQAFLAEASVMTQLRHSNLVQLLGV 73
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
+E +++V EY+ GS +L +VL L + V +A+ +L
Sbjct: 74 IVE-------EKGGLYIVTEYMAKGSLVDYLRSR-GRSVLGGDCLLKFSLDVCEAMEYLE 125
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISI---IMEEHEKLEAKGEGPKARYGFL 620
+ +F +R L N+L+ E +AK+SD+G++ ++ KL K P+A
Sbjct: 126 GN----NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREAA 181
Query: 621 FICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
F ++ DV++FG +L E
Sbjct: 182 FSTKS------------------DVWSFGILLWE 197
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 116/289 (40%), Gaps = 50/289 (17%)
Query: 448 MGEGSRGKLYKGRLENG----TYVAIRSLTFLKKY-SIQNLKVRLDFLSKLQHPHLVSLL 502
+G G G +Y G L + + A++SL + + + HP+++SLL
Sbjct: 33 IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 92
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G C+ S +V Y+ +G R + +K D + + VAK + +
Sbjct: 93 GICLRSEGSP-------LVVLPYMKHGDLRNFIRNETHNPTVK--DLIGFGLQVAKGMKY 143
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
L S F +R L N +LDE K++D+G++ M + E + A+ +
Sbjct: 144 LASK----KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNK-TGAKLPVKW 198
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV--GP----IVTGKGEAFLLNEMAS 675
+ S + Q+ + DV++FG +L E + P + T +LL
Sbjct: 199 MALESLQT-------QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG--- 248
Query: 676 FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
RR++ P C +++ KC P+ RPSF +++
Sbjct: 249 -------RRLLQP---EYCPDPLYEVML----KCWHPKAEMRPSFSELV 283
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 120/280 (42%), Gaps = 48/280 (17%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G G G+++ T VA++++ S++ + + LQH LV L H +
Sbjct: 196 LGAGQFGEVWMATYNKHTKVAVKTMK-PGSMSVEAFLAEANVMKTLQHDKLVKL--HAV- 251
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHL-----SENCPENVLKWSDRLAILIGVAKAVHF 562
++++ E++ GS L S+ ++ +S ++A + + ++
Sbjct: 252 ------VTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNY 305
Query: 563 LHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFI 622
+H L NIL+ + K++D+G++ ++E++E AR G F
Sbjct: 306 IHRD---------LRAANILVSASLVCKIADFGLARVIEDNEYT--------AREGAKFP 348
Query: 623 CRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVT-GKGEAFLLNEMASFGSQDG 681
+ +A ++ ++ DV++FG +L+E IVT G+ ++ + +
Sbjct: 349 IKWTAPE---AINFGSFTIKSDVWSFGILLME-----IVTYGRIPYPGMSNPEVIRALER 400
Query: 682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
R+ P C +E +I++ +C P RP+FE
Sbjct: 401 GYRMPRP---ENCPEELYNIMM----RCWKNRPEERPTFE 433
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 122/315 (38%), Gaps = 54/315 (17%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYK------GRLENGTYVAIRSL-TFLKKYSIQNL 483
Y E+ + NN +G G+ GK+ + G+ + VA++ L + + L
Sbjct: 37 YNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEAL 96
Query: 484 KVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYI--------------PN 528
L +S L QH ++V+LLG C G V ++ EY P
Sbjct: 97 MSELKIMSHLGQHENIVNLLGACTHGGP--------VLVITEYCCYGDLLNFLRRKRPPG 148
Query: 529 GSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRI 588
Y + S N PE L D L VA+ + FL S + N+LL +
Sbjct: 149 LEYSYNPSHN-PEEQLSSRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVLLTNGHV 204
Query: 589 AKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNF 648
AK+ D+G++ + KG AR ++ S + V V + DV+++
Sbjct: 205 AKIGDFGLARDIMNDSNYIVKG---NARLPVKWMAPESIFDCVYTV-------QSDVWSY 254
Query: 649 GFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNK 708
G +L E + + L+N +DG ++ P + + SI
Sbjct: 255 GILLWE--IFSLGLNPYPGILVNSKFYKLVKDG-YQMAQPAF-------APKNIYSIMQA 304
Query: 709 CICPEPSSRPSFEDV 723
C EP+ RP+F+ +
Sbjct: 305 CWALEPTHRPTFQQI 319
>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5Q|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
Length = 348
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 18/163 (11%)
Query: 442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYS---IQNLKVRLDFLSKLQHPH 497
F L +G GS G +Y R + N VAI+ +++ K S Q++ + FL KL+HP+
Sbjct: 56 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 115
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
+ G + + +LV EY + P L+ + A+ G
Sbjct: 116 TIQYRGCYLRE--------HTAWLVMEYCLGSASDLLEVHKKP---LQEVEIAAVTHGAL 164
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ + +LHS + + NILL E + KL D+G + IM
Sbjct: 165 QGLAYLHSHNM---IHRDVKAGNILLSEPGLVKLGDFGSASIM 204
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 127/301 (42%), Gaps = 55/301 (18%)
Query: 435 LKEATNNFDSLSFMGEGSRGKLYKGRL--ENGTY---VAIRSL--TFLKKYSIQNLKVRL 487
LKE + +G G+ G +YKG E T VAI+ L T K +++ + L
Sbjct: 12 LKE--TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEAL 69
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENV---- 543
++ + HPHLV LLG C+ Q LV + +P+G ++ E+ +N+
Sbjct: 70 -IMASMDHPHLVRLLGVCLSPTIQ---------LVTQLMPHGCLLEYVHEH-KDNIGSQL 118
Query: 544 -LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE 602
L W + +AK + +L + L N+L+ K++D+G++ ++E
Sbjct: 119 LLNWC------VQIAKGMMYLEERRL---VHRDLAARNVLVKSPNHVKITDFGLARLLEG 169
Query: 603 HEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVT 662
EK E +G K ++ + + ++ + DV+++G + E +
Sbjct: 170 DEK-EYNADGGKMPIKWM---------ALECIHYRKFTHQSDVWSYGVTIWELMT---FG 216
Query: 663 GKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFED 722
GK + + G R P+ C+ + ++V KC + SRP F++
Sbjct: 217 GKPYDGIPTREIPDLLEKGERLPQPPI----CTIDVYMVMV----KCWMIDADSRPKFKE 268
Query: 723 V 723
+
Sbjct: 269 L 269
>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|B Chain B, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|C Chain C, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|D Chain D, Structure Of Human Phosphorylase Kinase, Gamma 2
Length = 365
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 14/112 (12%)
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
HPH+++L+ ES S +FLV++ + G +L+E L + +I+
Sbjct: 159 HPHIITLID-SYESSS-------FMFLVFDLMRKGELFDYLTEKV---ALSEKETRSIMR 207
Query: 555 GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKL 606
+ +AV FLH++ I L NILLD++ +LSD+G S +E EKL
Sbjct: 208 SLLEAVSFLHANNI---VHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKL 256
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 41/232 (17%)
Query: 427 YRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVR 486
YR+ + +KE L +G+G G + G G VA++ + + Q
Sbjct: 12 YRSGWALNMKE----LKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIK--NDATAQAFLAE 64
Query: 487 LDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKW 546
+++L+H +LV LLG +E +++V EY+ GS +L +VL
Sbjct: 65 ASVMTQLRHSNLVQLLGVIVE-------EKGGLYIVTEYMAKGSLVDYLRSR-GRSVLGG 116
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISI---IMEE 602
L + V +A+ +L + +F +R L N+L+ E +AK+SD+G++ ++
Sbjct: 117 DCLLKFSLDVCEAMEYLEGN----NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD 172
Query: 603 HEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
KL K P+A + ++ + DV++FG +L E
Sbjct: 173 TGKLPVKWTAPEA------------------LREKKFSTKSDVWSFGILLWE 206
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 112/280 (40%), Gaps = 43/280 (15%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G G+ G + K + VAI+ + + + V L LS++ HP++V L G C+
Sbjct: 16 VGRGAFGVVCKAKW-RAKDVAIKQIE--SESERKAFIVELRQLSRVNHPNIVKLYGACL- 71
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSV 567
N V LV EY GS L P + ++ + ++ V +LHS
Sbjct: 72 ---------NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQ 122
Query: 568 ISGSFSNRLTTNNILL-DEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTS 626
L N+LL + K+ D+G + ++ H KG ++
Sbjct: 123 PKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH-MTNNKG--------------SA 167
Query: 627 AENVVIVVDIQRTKLEDDVYNFGFILLESLV--GPIVTGKGEAFLLNEMASFGSQDGRRR 684
A V + + DV+++G IL E + P G AF + + +G R
Sbjct: 168 AWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRI----MWAVHNGTR- 222
Query: 685 IVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
P ++ + + S+ +C +PS RPS E+++
Sbjct: 223 ---PPLIKNLPKP----IESLMTRCWSKDPSQRPSMEEIV 255
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 39/221 (17%)
Query: 448 MGEGSRGKLYKGRL----ENGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
+G G G++ GRL + VAI++L + + R DFLS + HP+
Sbjct: 57 IGSGDSGEVCYGRLRVPGQRDVPVAIKALK-----AGYTERQRRDFLSEASIMGQFDHPN 111
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
++ L G + +V EY+ NGS L + + + + +L GV
Sbjct: 112 IIRLEGVV--------TRGRLAMIVTEYMENGSLDTFLRTHDGQFTIM--QLVGMLRGVG 161
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
+ +L G L N+L+D + + K+SD+G+S ++E+ G
Sbjct: 162 AGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAXTTTG----- 213
Query: 618 GFLFICRTSAENVVIVVDIQRT-KLEDDVYNFGFILLESLV 657
G + I T+ E + RT DV++FG ++ E L
Sbjct: 214 GKIPIRWTAPEAIAF-----RTFSSASDVWSFGVVMWEVLA 249
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 99/223 (44%), Gaps = 45/223 (20%)
Query: 448 MGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVRLDFL------SKLQHPH 497
+G G G++ GRL+ VAI++L Y+ K R DFL + HP+
Sbjct: 51 IGAGEFGEVCSGRLKLPGKRDVAVAIKTLKV--GYT---EKQRRDFLCEASIMGQFDHPN 105
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
+V L G + V +V E++ NG+ A L ++ + + +L G+A
Sbjct: 106 VVHLEGVV--------TRGKPVMIVIEFMENGALDAFLRKH--DGQFTVIQLVGMLRGIA 155
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
+ +L G L NIL++ + + K+SD+G+S ++E+ P+A Y
Sbjct: 156 AGMRYLADM---GYVHRDLAARNILVNSNLVCKVSDFGLSRVIEDD---------PEAVY 203
Query: 618 ----GFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
G + + T+ E + ++ DV+++G ++ E +
Sbjct: 204 TTTGGKIPVRWTAPE----AIQYRKFTSASDVWSYGIVMWEVM 242
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 95/225 (42%), Gaps = 47/225 (20%)
Query: 448 MGEGSRGKLYKGRL----ENGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
+G G G++ GRL + VAI++L + + R DFLS + HP+
Sbjct: 57 IGSGDSGEVCYGRLRVPGQRDVPVAIKALK-----AGYTERQRRDFLSEASIMGQFDHPN 111
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
++ L G + +V EY+ NGS L + + + + +L GV
Sbjct: 112 IIRLEGVV--------TRGRLAMIVTEYMENGSLDTFLRTHDGQFTIM--QLVGMLRGVG 161
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
+ +L G L N+L+D + + K+SD+G+S ++E+ P A Y
Sbjct: 162 AGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDD---------PDAAY 209
Query: 618 ----GFLFICRTSAENVVIVVDIQRT-KLEDDVYNFGFILLESLV 657
G + I T+ E + RT DV++FG ++ E L
Sbjct: 210 TTTGGKIPIRWTAPEAIAF-----RTFSSASDVWSFGVVMWEVLA 249
>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure
pdb|2GCD|B Chain B, Tao2 Kinase Domain-Staurosporine Structure
Length = 309
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 18/163 (11%)
Query: 442 FDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYS---IQNLKVRLDFLSKLQHPH 497
F L +G GS G +Y R + N VAI+ +++ K S Q++ + FL KL+HP+
Sbjct: 17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
+ G + + +LV EY + P L+ + A+ G
Sbjct: 77 TIQYRGCYLRE--------HTAWLVMEYCLGSASDLLEVHKKP---LQEVEIAAVTHGAL 125
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ + +LHS + NILL E + KL D+G + IM
Sbjct: 126 QGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIM 165
>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3Q4T|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3SOC|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|3SOC|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|4ASX|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
pdb|4ASX|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
Length = 322
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 103/219 (47%), Gaps = 26/219 (11%)
Query: 445 LSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
L G G ++K +L N YVA++ K S QN + + L ++H +++ +G
Sbjct: 29 LEVKARGRFGCVWKAQLLN-EYVAVKIFPIQDKQSWQN-EYEVYSLPGMKHENILQFIG- 85
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
+ G+ D + ++L+ + GS LS+ NV+ W++ I +A+ + +LH
Sbjct: 86 AEKRGTSVDVD---LWLITAFHEKGS----LSDFLKANVVSWNELCHIAETMARGLAYLH 138
Query: 565 SSV------ISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARY 617
+ + S+R + + N+LL + A ++D+G+++ K EA G+ +
Sbjct: 139 EDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLAL------KFEA-GKSAGDTH 191
Query: 618 GFLFICRTSAENVVI-VVDIQRTK-LEDDVYNFGFILLE 654
G + R A V+ ++ QR L D+Y G +L E
Sbjct: 192 GQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWE 230
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 100/220 (45%), Gaps = 37/220 (16%)
Query: 448 MGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
+G G G++ G L+ +VAI++L S K R DFLS + HP+
Sbjct: 15 IGAGEFGEVCSGHLKLPGKREIFVAIKTLK-----SGYTEKQRRDFLSEASIMGQFDHPN 69
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
++ L G +S V ++ E++ NGS + L +N + + +L G+A
Sbjct: 70 VIHLEGVVTKS--------TPVMIITEFMENGSLDSFLRQN--DGQFTVIQLVGMLRGIA 119
Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
+ +L ++ +R L NIL++ + + K+SD+G+S +E+ + A
Sbjct: 120 AGMKYLADM----NYVHRALAARNILVNSNLVCKVSDFGLSRFLEDD---TSDPTYTSAL 172
Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
G + I T+ E + ++ DV+++G ++ E +
Sbjct: 173 GGKIPIRWTAPE----AIQYRKFTSASDVWSYGIVMWEVM 208
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
In Complex With Dasatinib
Length = 265
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 120/287 (41%), Gaps = 44/287 (15%)
Query: 445 LSFMGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
L +G G G + G+ VAI+ + + + I+ KV ++ L H LV L
Sbjct: 14 LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMN----LSHEKLVQL 69
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
G C + +F++ EY+ NG +L E + + L + V +A+
Sbjct: 70 YGVC--------TKQRPIFIITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAME 119
Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFL 620
+L S F +R L N L+++ + K+SD+G+S + + E ++G
Sbjct: 120 YLESK----QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSRGSK-------- 167
Query: 621 FICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD 680
F R S V++ + + D++ FG ++ E + + E F +E A +Q
Sbjct: 168 FPVRWSPPEVLMY---SKFSSKSDIWAFGVLMWE--IYSLGKMPYERFTNSETAEHIAQG 222
Query: 681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
R+ P + + V +I C + RP+F+ +L N+
Sbjct: 223 --LRLYRPHLAS-------EKVYTIMYSCWHEKADERPTFKILLSNI 260
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 84/167 (50%), Gaps = 30/167 (17%)
Query: 448 MGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
+G G G++ +GRL+ + VAI++L Y+ + R +FLS + +HP+
Sbjct: 24 IGAGEFGEVCRGRLKAPGKKESCVAIKTLK--GGYTERQ---RREFLSEASIMGQFEHPN 78
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
++ L G +N+ V ++ E++ NG+ + L N + + +L G+A
Sbjct: 79 IIRLEGVV--------TNSMPVMILTEFMENGALDSFLRLN--DGQFTVIQLVGMLRGIA 128
Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEH 603
+ +L S+ +R L NIL++ + + K+SD+G+S +EE+
Sbjct: 129 SGMRYLAEM----SYVHRDLAARNILVNSNLVCKVSDFGLSRFLEEN 171
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 100/220 (45%), Gaps = 37/220 (16%)
Query: 448 MGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
+G G G++ G L+ +VAI++L S K R DFLS + HP+
Sbjct: 41 IGAGEFGEVCSGHLKLPGKREIFVAIKTLK-----SGYTEKQRRDFLSEASIMGQFDHPN 95
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
++ L G +S V ++ E++ NGS + L +N + + +L G+A
Sbjct: 96 VIHLEGVVTKS--------TPVMIITEFMENGSLDSFLRQN--DGQFTVIQLVGMLRGIA 145
Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKAR 616
+ +L ++ +R L NIL++ + + K+SD+G+S +E+ + A
Sbjct: 146 AGMKYLADM----NYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDD---TSDPTYTSAL 198
Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
G + I T+ E + ++ DV+++G ++ E +
Sbjct: 199 GGKIPIRWTAPE----AIQYRKFTSASDVWSYGIVMWEVM 234
>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.28 A Resolution
pdb|4G34|A Chain A, Crystal Structure Of Gsk6924 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.70 A Resolution
Length = 299
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 77/171 (45%), Gaps = 9/171 (5%)
Query: 441 NFDSLSFMGEGSRGKLY--KGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHL 498
+F+ + +G G G ++ K ++++ Y R ++ + + + + L+KL+HP +
Sbjct: 6 DFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGI 65
Query: 499 VSLLGHCIESGS----QDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
V +E + Q S +++ + + + ++ C + S L I +
Sbjct: 66 VRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFL 125
Query: 555 GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+A+AV FLHS G L +NI + K+ D+G+ M++ E+
Sbjct: 126 QIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEE 173
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 137/318 (43%), Gaps = 55/318 (17%)
Query: 419 LGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLT 473
+G + A L LKE F + +G G+ G +YKG + G V AI+ L
Sbjct: 3 MGIRSGEAPNQALLRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR 60
Query: 474 FLKKYSIQNLKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS 530
+ S + K LD ++ + +PH+ LLG C+ T+ V L+ + +P G
Sbjct: 61 --EATSPKANKEILDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGC 109
Query: 531 ----YRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH 586
R H + +L W + +AK +++L + L N+L+
Sbjct: 110 LLDYVREHKDNIGSQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTP 160
Query: 587 RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVY 646
+ K++D+G++ ++ EK E EG K ++ + E+++ + ++ DV+
Sbjct: 161 QHVKITDFGLAKLLGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVW 210
Query: 647 NFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSIT 706
++G + E + + + +E++S + G R P+ C+ + I+V
Sbjct: 211 SYGVTVWELMT--FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV--- 260
Query: 707 NKCICPEPSSRPSFEDVL 724
KC + SRP F +++
Sbjct: 261 -KCWMIDADSRPKFRELI 277
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 84/167 (50%), Gaps = 30/167 (17%)
Query: 448 MGEGSRGKLYKGRLE----NGTYVAIRSLTFLKKYSIQNLKVRLDFLS------KLQHPH 497
+G G G++ +GRL+ + VAI++L Y+ + R +FLS + +HP+
Sbjct: 22 IGAGEFGEVCRGRLKAPGKKESCVAIKTLK--GGYTERQ---RREFLSEASIMGQFEHPN 76
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
++ L G +N+ V ++ E++ NG+ + L N + + +L G+A
Sbjct: 77 IIRLEGVV--------TNSMPVMILTEFMENGALDSFLRLN--DGQFTVIQLVGMLRGIA 126
Query: 558 KAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEH 603
+ +L S+ +R L NIL++ + + K+SD+G+S +EE+
Sbjct: 127 SGMRYLAEM----SYVHRDLAARNILVNSNLVCKVSDFGLSRFLEEN 169
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 120/287 (41%), Gaps = 44/287 (15%)
Query: 445 LSFMGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
L +G G G + G+ VAI+ + + + I+ KV ++ L H LV L
Sbjct: 29 LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMN----LSHEKLVQL 84
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
G C + +F++ EY+ NG +L E + + L + V +A+
Sbjct: 85 YGVC--------TKQRPIFIITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAME 134
Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFL 620
+L S F +R L N L+++ + K+SD+G+S + + E+ + G
Sbjct: 135 YLESK----QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEETSSVGSK-------- 182
Query: 621 FICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD 680
F R S V++ + + D++ FG ++ E + + E F +E A +Q
Sbjct: 183 FPVRWSPPEVLMY---SKFSSKSDIWAFGVLMWE--IYSLGKMPYERFTNSETAEHIAQG 237
Query: 681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
R+ P + + V +I C + RP+F+ +L N+
Sbjct: 238 --LRLYRPHLAS-------EKVYTIMYSCWHEKADERPTFKILLSNI 275
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 37/214 (17%)
Query: 445 LSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
L +G+G G + G G VA++ + + Q +++L+H +LV LLG
Sbjct: 11 LQTIGKGEFGDVMLGDY-RGNKVAVKCIK--NDATAQAFLAEASVMTQLRHSNLVQLLGV 67
Query: 505 CIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLH 564
+E +++V EY+ GS +L +VL L + V +A+ +L
Sbjct: 68 IVE-------EKGGLYIVTEYMAKGSLVDYLRSR-GRSVLGGDCLLKFSLDVCEAMEYLE 119
Query: 565 SSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISI---IMEEHEKLEAKGEGPKARYGFL 620
+ +F +R L N+L+ E +AK+SD+G++ ++ KL K P+A
Sbjct: 120 GN----NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEA----- 170
Query: 621 FICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
+ ++ + DV++FG +L E
Sbjct: 171 -------------LREKKFSTKSDVWSFGILLWE 191
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 139/336 (41%), Gaps = 64/336 (19%)
Query: 414 SQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL 472
S V LGT+ Y + +++ +++L +GEGS G + K R + G VAI+
Sbjct: 9 SSGVDLGTE------NLYFQSMEK----YENLGLVGEGSYGMVMKCRNKDTGRIVAIKKF 58
Query: 473 ------TFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYI 526
+KK +++ +K+ L +L+H +LV+LL C + +LV+E++
Sbjct: 59 LESDDDKMVKKIAMREIKL----LKQLRHENLVNLLEVC--------KKKKRWYLVFEFV 106
Query: 527 PNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH 586
+ E P N L + L + + F HS I + NIL+ +
Sbjct: 107 DHTILDD--LELFP-NGLDYQVVQKYLFQIINGIGFCHSHNI---IHRDIKPENILVSQS 160
Query: 587 RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVY 646
+ KL D+G + L A GE Y R ++V D++ K DV+
Sbjct: 161 GVVKLCDFGFA------RTLAAPGE----VYDDEVATRWYRAPELLVGDVKYGKAV-DVW 209
Query: 647 NFGFILLESLVG-PIVTGKGEA-FLLNEMASFGSQDGRRRIV---DPVVL-----TTCSQ 696
G ++ E +G P+ G + L + M G+ R + + +PV +
Sbjct: 210 AIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKER 269
Query: 697 ESL--------SIVVSITNKCICPEPSSRPSFEDVL 724
E L +V+ + KC+ +P RP ++L
Sbjct: 270 EPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELL 305
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 483 LKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPEN 542
+K ++ L L+H H+ L H +E+ NK+F+V EY P G ++ ++
Sbjct: 55 IKTEIEALKNLRHQHICQLY-HVLETA-------NKIFMVLEYCPGGELFDYI---ISQD 103
Query: 543 VLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
L + + + AV ++HS G L N+L DE+ KL D+G+
Sbjct: 104 RLSEEETRVVFRQIVSAVAYVHS---QGYAHRDLKPENLLFDEYHKLKLIDFGL 154
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 24/167 (14%)
Query: 442 FDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
+ + +G GS G +++ +L VAI+ + K++ + L++ + ++HP++V L
Sbjct: 42 YTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNRELQI----MRIVKHPNVVDL 97
Query: 502 LGHCIESGSQDDSNTNKVF--LVYEYIPNGSYR-----AHLSENCPENVLKWSDRLAILI 554
+G + D +VF LV EY+P YR A L + P ++K +
Sbjct: 98 KAFFYSNGDKKD----EVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKL-----YMY 148
Query: 555 GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR-IAKLSDYGISIIM 600
+ +++ ++HS G + N+LLD + KL D+G + I+
Sbjct: 149 QLLRSLAYIHS---IGICHRDIKPQNLLLDPPSGVLKLIDFGSAKIL 192
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 13 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 68
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 69 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIG 119
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G++ +
Sbjct: 120 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 170
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 171 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 218
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + I+V KC + SRP
Sbjct: 219 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 269
Query: 720 FEDVL 724
F +++
Sbjct: 270 FRELI 274
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 97/233 (41%), Gaps = 45/233 (19%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-------RL 487
K + +F L +G GS G+++ R NG Y A++ L KK + LK RL
Sbjct: 2 KYSLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVL---KKEIVVRLKQVEHTNDERL 58
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL--SENCPENVLK 545
LS + HP ++ + G + ++F++ +YI G + L S+ P V K
Sbjct: 59 -MLSIVTHPFIIRMWGTF--------QDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAK 109
Query: 546 WSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ V A+ +LHS I L NILLD++ K++D+G + +
Sbjct: 110 F-----YAAEVCLALEYLHSKDI---IYRDLKPENILLDKNGHIKITDFGFAKYV----- 156
Query: 606 LEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG 658
P Y +C T VV + D ++FG ++ E L G
Sbjct: 157 -------PDVTYX---LCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAG 199
>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase
Domain Of The Human Epidermal Growth Factor Receptor 3
(Her3)
pdb|3KEX|B Chain B, Crystal Structure Of The Catalytically Inactive Kinase
Domain Of The Human Epidermal Growth Factor Receptor 3
(Her3)
Length = 325
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 28/176 (15%)
Query: 440 NNFDSLSFMGEGSRGKLYKG-RLENGTYVAIRSLTFL-----KKYSIQNLKVRLDFLSKL 493
L +G G G ++KG + G + I + + S Q + + + L
Sbjct: 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSL 72
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN----CPENVLKWSDR 549
H H+V LLG C S Q LV +Y+P GS H+ ++ P+ +L W
Sbjct: 73 DHAHIVRLLGLCPGSSLQ---------LVTQYLPLGSLLDHVRQHRGALGPQLLLNWG-- 121
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ +AK +++L G L N+LL +++D+G++ ++ +K
Sbjct: 122 ----VQIAKGMYYLEE---HGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDK 170
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 34/177 (19%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTF---------LKKYSIQNLKVRL 487
A N + +G+G G ++KGRL ++ + VAI+SL ++K+ Q + +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKF--QEFQREV 74
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS-YRAHLSENCPENVLKW 546
+S L HP++V L G N +V E++P G Y L + P +KW
Sbjct: 75 FIMSNLNHPNIVKLYGLM----------HNPPRMVMEFVPCGDLYHRLLDKAHP---IKW 121
Query: 547 SDRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNIL---LDEHR--IAKLSDYGIS 597
S +L +++ +A + ++ + + +R L + NI LDE+ AK++D+ +S
Sbjct: 122 SVKLRLMLDIALGIEYMQNQ--NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFSLS 176
>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex
With Amp-Pnp
pdb|3LMG|B Chain B, Crystal Structure Of The Erbb3 Kinase Domain In Complex
With Amp-Pnp
Length = 344
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 35/188 (18%)
Query: 428 RTFYLEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYVAIRSLTFL-----KKYSIQ 481
R F EL++ L +G G G ++KG + G + I + + S Q
Sbjct: 26 RIFKETELRK-------LKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQ 78
Query: 482 NLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN--- 538
+ + + L H H+V LLG C S Q LV +Y+P GS H+ ++
Sbjct: 79 AVTDHMLAIGSLDHAHIVRLLGLCPGSSLQ---------LVTQYLPLGSLLDHVRQHRGA 129
Query: 539 -CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
P+ +L W + +AK +++L G L N+LL +++D+G++
Sbjct: 130 LGPQLLLNWG------VQIAKGMYYLEE---HGMVHRNLAARNVLLKSPSQVQVADFGVA 180
Query: 598 IIMEEHEK 605
++ +K
Sbjct: 181 DLLPPDDK 188
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 10 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 65
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 66 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGXLLDYVREHKDNIG 116
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G++ +
Sbjct: 117 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 167
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 168 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 215
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + I+V KC + SRP
Sbjct: 216 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 266
Query: 720 FEDVL 724
F +++
Sbjct: 267 FRELI 271
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 12 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 67
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 68 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIG 118
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G++ +
Sbjct: 119 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 169
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 170 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 217
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + I+V KC + SRP
Sbjct: 218 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 268
Query: 720 FEDVL 724
F +++
Sbjct: 269 FRELI 273
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 10 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 65
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 66 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIG 116
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G++ +
Sbjct: 117 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 167
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 168 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 215
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + I+V KC + SRP
Sbjct: 216 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 266
Query: 720 FEDVL 724
F +++
Sbjct: 267 FRELI 271
>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A60|B Chain B, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A61|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form Ii)
Length = 327
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 22/163 (13%)
Query: 442 FDSLSFMGEGSRGKLYKGRLENGTYVA-IRSLTFLKKYSI-------QNLKVRLDFLSKL 493
F+ L +G+G GK+++ R G I ++ LKK I + K + L ++
Sbjct: 19 FELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEV 78
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAIL 553
+HP +V L+ + ++G K++L+ EY+ G L E + L
Sbjct: 79 KHPFIVDLI-YAFQTGG-------KLYLILEYLSGGELFMQLER---EGIFMEDTACFYL 127
Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
++ A+ LH G L NI+L+ KL+D+G+
Sbjct: 128 AEISMALGHLHQ---KGIIYRDLKPENIMLNHQGHVKLTDFGL 167
>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1
Length = 327
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 22/163 (13%)
Query: 442 FDSLSFMGEGSRGKLYKGRLENGTYVA-IRSLTFLKKYSI-------QNLKVRLDFLSKL 493
F+ L +G+G GK+++ R G I ++ LKK I + K + L ++
Sbjct: 19 FELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEV 78
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAIL 553
+HP +V L+ + ++G K++L+ EY+ G L E + L
Sbjct: 79 KHPFIVDLI-YAFQTGG-------KLYLILEYLSGGELFMQLER---EGIFMEDTACFYL 127
Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
++ A+ LH G L NI+L+ KL+D+G+
Sbjct: 128 AEISMALGHLHQ---KGIIYRDLKPENIMLNHQGHVKLTDFGL 167
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 11 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 66
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 67 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIG 117
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G++ +
Sbjct: 118 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 168
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 169 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 216
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + I+V KC + SRP
Sbjct: 217 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 267
Query: 720 FEDVL 724
F +++
Sbjct: 268 FRELI 272
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 9 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 64
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 65 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIG 115
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G++ +
Sbjct: 116 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 166
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 167 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 214
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + I+V KC + SRP
Sbjct: 215 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 265
Query: 720 FEDVL 724
F +++
Sbjct: 266 FRELI 270
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 132/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 12 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 67
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 68 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 118
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G++ +
Sbjct: 119 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 169
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 170 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 217
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + V I KC + SRP
Sbjct: 218 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTID----VYMIMRKCWMIDADSRPK 268
Query: 720 FEDVL 724
F +++
Sbjct: 269 FRELI 273
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 120/308 (38%), Gaps = 46/308 (14%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYK------GRLENGTYVAIRSL-TFLKKYSIQNL 483
Y E+ + NN +G G+ GK+ + G+ + VA++ L + + L
Sbjct: 29 YNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEAL 88
Query: 484 KVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPEN 542
L +S L QH ++V+LLG C G V ++ EY G L +
Sbjct: 89 MSELKIMSHLGQHENIVNLLGACTHGGP--------VLVITEYCCYGDLLNFLRRKAEAD 140
Query: 543 V-------LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG 595
+ L+ D L VA+ + FL S + N+LL +AK+ D+G
Sbjct: 141 LDKEDGRPLELRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVLLTNGHVAKIGDFG 197
Query: 596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLES 655
++ + KG AR ++ S + V V + DV+++G +L E
Sbjct: 198 LARDIMNDSNYIVKG---NARLPVKWMAPESIFDCVYTV-------QSDVWSYGILLWE- 246
Query: 656 LVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPS 715
+ + L+N +DG ++ P + + SI C EP+
Sbjct: 247 -IFSLGLNPYPGILVNSKFYKLVKDG-YQMAQPAF-------APKNIYSIMQACWALEPT 297
Query: 716 SRPSFEDV 723
RP+F+ +
Sbjct: 298 HRPTFQQI 305
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 15 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 70
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 71 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 121
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G++ +
Sbjct: 122 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 172
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 173 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 220
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + I+V KC + SRP
Sbjct: 221 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 271
Query: 720 FEDVL 724
F +++
Sbjct: 272 FRELI 276
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 131/303 (43%), Gaps = 51/303 (16%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYVAIRS--LTFLKKYSIQNLKVRLD 488
L LKE F + +G G+ G +YKG + G V I + + S + K LD
Sbjct: 43 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIMELREATSPKANKEILD 100
Query: 489 ---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENCPE 541
++ + +PH+ LLG C+ T+ V L+ + +P G R H +
Sbjct: 101 EAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIGSQ 151
Query: 542 NVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIME 601
+L W + +AK +++L + L N+L+ + K++D+G++ ++
Sbjct: 152 YLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKLLG 202
Query: 602 EHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIV 661
EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 203 AEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT--FG 250
Query: 662 TGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
+ + +E++S + G R P+ C+ + I+V KC + SRP F
Sbjct: 251 SKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPKFR 301
Query: 722 DVL 724
+++
Sbjct: 302 ELI 304
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 11 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 66
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 67 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 117
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G++ +
Sbjct: 118 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 168
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 169 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 216
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + I+V KC + SRP
Sbjct: 217 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 267
Query: 720 FEDVL 724
F +++
Sbjct: 268 FRELI 272
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 12 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 67
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 68 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 118
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G++ +
Sbjct: 119 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 169
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 170 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 217
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + I+V KC + SRP
Sbjct: 218 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 268
Query: 720 FEDVL 724
F +++
Sbjct: 269 FRELI 273
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 119/287 (41%), Gaps = 44/287 (15%)
Query: 445 LSFMGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
L +G G G + G+ VAI+ + + + I+ KV ++ L H LV L
Sbjct: 29 LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMN----LSHEKLVQL 84
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
G C + +F++ EY+ NG +L E + + L + V +A+
Sbjct: 85 YGVC--------TKQRPIFIITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAME 134
Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFL 620
+L S F +R L N L+++ + K+SD+G+S + + E + G
Sbjct: 135 YLESK----QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSK-------- 182
Query: 621 FICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD 680
F R S V++ + + D++ FG ++ E + + E F +E A +Q
Sbjct: 183 FPVRWSPPEVLMY---SKFSSKSDIWAFGVLMWE--IYSLGKMPYERFTNSETAEHIAQG 237
Query: 681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
R+ P + + V +I C + RP+F+ +L N+
Sbjct: 238 --LRLYRPHLAS-------EKVYTIMYSCWHEKADERPTFKILLSNI 275
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 132/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 19 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 74
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 75 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 125
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G++ +
Sbjct: 126 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 176
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 177 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 224
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + V I KC + SRP
Sbjct: 225 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTID----VYMIMRKCWMIDADSRPK 275
Query: 720 FEDVL 724
F +++
Sbjct: 276 FRELI 280
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 12 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 67
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 68 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 118
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G++ +
Sbjct: 119 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 169
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 170 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 217
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + I+V KC + SRP
Sbjct: 218 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 268
Query: 720 FEDVL 724
F +++
Sbjct: 269 FRELI 273
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 9 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 64
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 65 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGXLLDYVREHKDNIG 115
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G++ +
Sbjct: 116 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 166
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 167 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 214
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + I+V KC + SRP
Sbjct: 215 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 265
Query: 720 FEDVL 724
F +++
Sbjct: 266 FRELI 270
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 9 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 64
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 65 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 115
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G++ +
Sbjct: 116 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 166
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 167 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 214
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + I+V KC + SRP
Sbjct: 215 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 265
Query: 720 FEDVL 724
F +++
Sbjct: 266 FRELI 270
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 34 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 89
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 90 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 140
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G++ +
Sbjct: 141 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 191
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 192 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 239
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + I+V KC + SRP
Sbjct: 240 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 290
Query: 720 FEDVL 724
F +++
Sbjct: 291 FRELI 295
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 120/308 (38%), Gaps = 46/308 (14%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYK------GRLENGTYVAIRSL-TFLKKYSIQNL 483
Y E+ + NN +G G+ GK+ + G+ + VA++ L + + L
Sbjct: 37 YNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEAL 96
Query: 484 KVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPEN 542
L +S L QH ++V+LLG C G V ++ EY G L +
Sbjct: 97 MSELKIMSHLGQHENIVNLLGACTHGGP--------VLVITEYCCYGDLLNFLRRKAEAD 148
Query: 543 V-------LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYG 595
+ L+ D L VA+ + FL S + N+LL +AK+ D+G
Sbjct: 149 LDKEDGRPLELRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVLLTNGHVAKIGDFG 205
Query: 596 ISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLES 655
++ + KG AR ++ S + V V + DV+++G +L E
Sbjct: 206 LARDIMNDSNYIVKG---NARLPVKWMAPESIFDCVYTV-------QSDVWSYGILLWE- 254
Query: 656 LVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPS 715
+ + L+N +DG ++ P + + SI C EP+
Sbjct: 255 -IFSLGLNPYPGILVNSKFYKLVKDG-YQMAQPAF-------APKNIYSIMQACWALEPT 305
Query: 716 SRPSFEDV 723
RP+F+ +
Sbjct: 306 HRPTFQQI 313
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 132/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 9 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 64
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 65 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 115
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G++ +
Sbjct: 116 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 166
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 167 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 214
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + V I KC + SRP
Sbjct: 215 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTID----VYMIMRKCWMIDADSRPK 265
Query: 720 FEDVL 724
F +++
Sbjct: 266 FRELI 270
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFL 490
L L++ F+ + +G G+ G++YKGR ++ G AI+ + + +K ++ L
Sbjct: 16 LSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEE-EEIKQEINML 74
Query: 491 SKL-QHPHLVSLLGHCIESG--SQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWS 547
K H ++ + G I+ DD +++LV E+ GS L +N N LK
Sbjct: 75 KKYSHHRNIATYYGAFIKKNPPGMDD----QLWLVMEFCGAGSV-TDLIKNTKGNTLKEE 129
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
I + + + LH + + N+LL E+ KL D+G+S
Sbjct: 130 WIAYICREILRGLSHLHQHKV---IHRDIKGQNVLLTENAEVKLVDFGVS 176
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 129/314 (41%), Gaps = 77/314 (24%)
Query: 448 MGEGSRGK--------LYKGRLENGTYVAIRSL-TFLKKYSIQNLKVRLDFLSKL-QHPH 497
+GEG+ G+ L K + T VA++ L + + + +L ++ + + +H +
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 95
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------ENC------PENVL 544
+++LLG C + G ++++ EY G+ R +L E C PE L
Sbjct: 96 IINLLGACTQDGP--------LYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQL 147
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE 604
D ++ VA+ + +L S L N+L+ E + K++D+G++ + +
Sbjct: 148 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 204
Query: 605 --------KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
+L K P+A + ++ ++ DV++FG +L E
Sbjct: 205 YYKKTTNGRLPVKWMAPEALFDRIYTHQS------------------DVWSFGVLLWE-- 244
Query: 657 VGPIVTGKGEAF---LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPE 713
I T G + + E+ + R+ P + C+ E + + C
Sbjct: 245 ---IFTLGGSPYPGVPVEELFKLLKEG--HRMDKP---SNCTNE----LYMMMRDCWHAV 292
Query: 714 PSSRPSFEDVLWNL 727
PS RP+F+ ++ +L
Sbjct: 293 PSQRPTFKQLVEDL 306
>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
pdb|3HYH|B Chain B, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
Length = 275
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 29/171 (16%)
Query: 441 NFDSLSFMGEGSRGKLYKG-RLENGTYVAIRSLT--FLKKYSIQ-NLKVRLDFLSKLQHP 496
N+ + +GEGS GK+ G VA++ + L K +Q ++ + +L L+HP
Sbjct: 14 NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHP 73
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSY-----RAHLSENCPENVLKWSDRLA 551
H++ L I+S +++ +V EY N + R +SE +
Sbjct: 74 HIIKLYD-VIKS-------KDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQ------ 119
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE 602
+ AV + H I L N+LLDEH K++D+G+S IM +
Sbjct: 120 ---QIISAVEYCHRHKI---VHRDLKPENLLLDEHLNVKIADFGLSNIMTD 164
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 129/314 (41%), Gaps = 77/314 (24%)
Query: 448 MGEGSRGK--------LYKGRLENGTYVAIRSL-TFLKKYSIQNLKVRLDFLSKL-QHPH 497
+GEG+ G+ L K + T VA++ L + + + +L ++ + + +H +
Sbjct: 21 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 80
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------ENC------PENVL 544
+++LLG C + G ++++ EY G+ R +L E C PE L
Sbjct: 81 IINLLGACTQDGP--------LYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQL 132
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE 604
D ++ VA+ + +L S L N+L+ E + K++D+G++ + +
Sbjct: 133 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 189
Query: 605 --------KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
+L K P+A + ++ ++ DV++FG +L E
Sbjct: 190 YYKKTTNGRLPVKWMAPEALFDRIYTHQS------------------DVWSFGVLLWE-- 229
Query: 657 VGPIVTGKGEAF---LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPE 713
I T G + + E+ + R+ P + C+ E + + C
Sbjct: 230 ---IFTLGGSPYPGVPVEELFKLLKEG--HRMDKP---SNCTNE----LYMMMRDCWHAV 277
Query: 714 PSSRPSFEDVLWNL 727
PS RP+F+ ++ +L
Sbjct: 278 PSQRPTFKQLVEDL 291
>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast
Snf1
Length = 274
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 29/171 (16%)
Query: 441 NFDSLSFMGEGSRGKLYKG-RLENGTYVAIRSLT--FLKKYSIQ-NLKVRLDFLSKLQHP 496
N+ + +GEGS GK+ G VA++ + L K +Q ++ + +L L+HP
Sbjct: 9 NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHP 68
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSY-----RAHLSENCPENVLKWSDRLA 551
H++ L I+S +++ +V EY N + R +SE +
Sbjct: 69 HIIKLYD-VIKS-------KDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQ------ 114
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE 602
+ AV + H I L N+LLDEH K++D+G+S IM +
Sbjct: 115 ---QIISAVEYCHRHKI---VHRDLKPENLLLDEHLNVKIADFGLSNIMTD 159
>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
pdb|3DAE|B Chain B, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
Length = 283
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 29/171 (16%)
Query: 441 NFDSLSFMGEGSRGKLYKG-RLENGTYVAIRSLT--FLKKYSIQ-NLKVRLDFLSKLQHP 496
N+ + +GEGS GK+ G VA++ + L K +Q ++ + +L L+HP
Sbjct: 15 NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHP 74
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSY-----RAHLSENCPENVLKWSDRLA 551
H++ L I+S +++ +V EY N + R +SE +
Sbjct: 75 HIIKLYD-VIKS-------KDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQ------ 120
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE 602
+ AV + H I L N+LLDEH K++D+G+S IM +
Sbjct: 121 ---QIISAVEYCHRHKI---VHRDLKPENLLLDEHLNVKIADFGLSNIMTD 165
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent Dual
Inhibitor
Length = 315
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 3 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 58
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 59 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 109
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G++ +
Sbjct: 110 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 160
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 161 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 208
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + I+V KC + SRP
Sbjct: 209 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 259
Query: 720 FEDVL 724
F +++
Sbjct: 260 FRELI 264
>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of
The Saccharomyces Cerevisiae Ampk Homolog Snf1
Length = 271
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 29/171 (16%)
Query: 441 NFDSLSFMGEGSRGKLYKG-RLENGTYVAIRSLT--FLKKYSIQ-NLKVRLDFLSKLQHP 496
N+ + +GEGS GK+ G VA++ + L K +Q ++ + +L L+HP
Sbjct: 5 NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHP 64
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSY-----RAHLSENCPENVLKWSDRLA 551
H++ L I+S +++ +V EY N + R +SE +
Sbjct: 65 HIIKLYD-VIKS-------KDEIIMVIEYAGNELFDYIVQRDKMSEQEARRFFQ------ 110
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE 602
+ AV + H I L N+LLDEH K++D+G+S IM +
Sbjct: 111 ---QIISAVEYCHRHKI---VHRDLKPENLLLDEHLNVKIADFGLSNIMTD 155
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 136/318 (42%), Gaps = 55/318 (17%)
Query: 419 LGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLT 473
+G + A L LKE F + +G G+ G +YKG + G V AI+ L
Sbjct: 3 MGIRSGEAPNQALLRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR 60
Query: 474 FLKKYSIQNLKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS 530
+ S + K LD ++ + +PH+ LLG C+ T+ V L+ + +P G
Sbjct: 61 --EATSPKANKEILDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGC 109
Query: 531 ----YRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH 586
R H + +L W + +AK +++L + L N+L+
Sbjct: 110 LLDYVREHKDNIGSQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTP 160
Query: 587 RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVY 646
+ K++D+G + ++ EK E EG K ++ + E+++ + ++ DV+
Sbjct: 161 QHVKITDFGRAKLLGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVW 210
Query: 647 NFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSIT 706
++G + E + + + +E++S + G R P+ C+ + I+V
Sbjct: 211 SYGVTVWELMT--FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV--- 260
Query: 707 NKCICPEPSSRPSFEDVL 724
KC + SRP F +++
Sbjct: 261 -KCWMIDADSRPKFRELI 277
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 119/287 (41%), Gaps = 44/287 (15%)
Query: 445 LSFMGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
L +G G G + G+ VAI+ + + + I+ KV ++ L H LV L
Sbjct: 20 LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMN----LSHEKLVQL 75
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
G C + +F++ EY+ NG +L E + + L + V +A+
Sbjct: 76 YGVC--------TKQRPIFIITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAME 125
Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFL 620
+L S F +R L N L+++ + K+SD+G+S + + E + G
Sbjct: 126 YLESK----QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSK-------- 173
Query: 621 FICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD 680
F R S V++ + + D++ FG ++ E + + E F +E A +Q
Sbjct: 174 FPVRWSPPEVLMY---SKFSSKSDIWAFGVLMWE--IYSLGKMPYERFTNSETAEHIAQG 228
Query: 681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
R+ P + + V +I C + RP+F+ +L N+
Sbjct: 229 --LRLYRPHLAS-------EKVYTIMYSCWHEKADERPTFKILLSNI 266
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 15/140 (10%)
Query: 112 DKIHRLSSL-ELLDMSSNFLFG----AIPSGI-SRLVRLQTLTMDTNFFDDNVPDW-WDS 164
+K+H +S+L EL +++ L G ++P+G+ +L L+ L + N ++PD +D
Sbjct: 73 NKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDK 131
Query: 165 LSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD--MSALTSLHVLDLRE 222
L+NLT L L NQL+ ++ LT + + NN+L LP+ LT L L L +
Sbjct: 132 LTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLND 190
Query: 223 NKLDSGLPLMPKGLVTVLLS 242
N+L S +P G+ L S
Sbjct: 191 NQLKS----VPDGVFDRLTS 206
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 110 LPDKI-HRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTNFFDDNVPDWWDSLSN 167
LPD + +L++L L + N L ++P G+ +L L L +D N +D L+
Sbjct: 124 LPDGVFDKLTNLTYLYLYHNQL-QSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQ 182
Query: 168 LTVLSLKSNQLKGQFPSSICRIATLTDIAMSNN 200
L LSL NQLK R+ +LT I + NN
Sbjct: 183 LKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 119/287 (41%), Gaps = 44/287 (15%)
Query: 445 LSFMGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
L +G G G + G+ VAI+ + + + I+ KV ++ L H LV L
Sbjct: 13 LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMN----LSHEKLVQL 68
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
G C + +F++ EY+ NG +L E + + L + V +A+
Sbjct: 69 YGVC--------TKQRPIFIITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAME 118
Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFL 620
+L S F +R L N L+++ + K+SD+G+S + + E + G
Sbjct: 119 YLESK----QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSK-------- 166
Query: 621 FICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD 680
F R S V++ + + D++ FG ++ E + + E F +E A +Q
Sbjct: 167 FPVRWSPPEVLMY---SKFSSKSDIWAFGVLMWE--IYSLGKMPYERFTNSETAEHIAQG 221
Query: 681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
R+ P + + V +I C + RP+F+ +L N+
Sbjct: 222 --LRLYRPHLAS-------EKVYTIMYSCWHEKADERPTFKILLSNI 259
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 119/287 (41%), Gaps = 44/287 (15%)
Query: 445 LSFMGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
L +G G G + G+ VAI+ + + + I+ KV ++ L H LV L
Sbjct: 9 LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMN----LSHEKLVQL 64
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
G C + +F++ EY+ NG +L E + + L + V +A+
Sbjct: 65 YGVC--------TKQRPIFIITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAME 114
Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFL 620
+L S F +R L N L+++ + K+SD+G+S + + E + G
Sbjct: 115 YLESK----QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSK-------- 162
Query: 621 FICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD 680
F R S V++ + + D++ FG ++ E + + E F +E A +Q
Sbjct: 163 FPVRWSPPEVLMY---SKFSSKSDIWAFGVLMWE--IYSLGKMPYERFTNSETAEHIAQG 217
Query: 681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
R+ P + + V +I C + RP+F+ +L N+
Sbjct: 218 --LRLYRPHLAS-------EKVYTIMYSCWHEKADERPTFKILLSNI 255
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 131 FGAIPSGISRLVRLQTLTMDTNFFDDN-VPDWWDSLSNLTVLSLKSNQLKGQFPSSICRI 189
F I +G+S L + L M N F +N +PD + L NLT L L QL+ P++ +
Sbjct: 437 FNGIFNGLSSL---EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 190 ATLTDIAMS-NNELSGKLPDMSALTSLHVLDLRENKLDSG----LPLMPKGLVTVLLSRN 244
++L + MS NN S L SL VLD N + + L P L + L++N
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
Query: 245 LFSGAIPQQ 253
F+ Q
Sbjct: 554 DFACTCEHQ 562
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 110 LPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMD-TNFFD-DNVPDWWDSLSN 167
LPD L +L LD+S L P+ + L LQ L M NFF D P + L++
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNS 519
Query: 168 LTVLSLKSNQL---KGQ----FPSSI 186
L VL N + K Q FPSS+
Sbjct: 520 LQVLDYSLNHIMTSKKQELQHFPSSL 545
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 164 SLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNEL-SGKLPDMSALTSLHVLDLRE 222
S L VL L +++ + ++ L+ + ++ N + S L S L+SL L E
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 223 NKLDSGLPLMPKGLVTVL----LSRNLF-SGAIPQQFGELAQLQHLDLSFNDLSGI 273
L S L P G + L ++ NL S +P+ F L L+HLDLS N + I
Sbjct: 110 TNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-1,2,2-trimethyl-propyl)-amide
pdb|4HVG|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-2-hydroxy-1,2-dimethyl-propyl)- Amide
pdb|4HVH|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-2-hydroxy-1,2-dimethyl-propyl
pdb|4HVI|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-1-methyl-2-oxo-2-piperidin-1-yl- Ethyl)-amide
Length = 314
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 116/307 (37%), Gaps = 56/307 (18%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
+S +G+G+ G + R + G VA++ L ++ + + L L +V
Sbjct: 15 ISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIV 74
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKA 559
G G Q + LV EY+P+G R L + L S L + K
Sbjct: 75 KYRGVSYGPGRQ------SLRLVMEYLPSGCLRDFLQRH--RARLDASRLLLYSSQICKG 126
Query: 560 VHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEGPKAR 616
+ +L S L NIL++ K++D+G++ ++ +++ + G+ P
Sbjct: 127 MEYLGSRRC---VHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPI-- 181
Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMAS- 675
F + + ++N+ + DV++FG +L E + A L M S
Sbjct: 182 --FWYAPESLSDNIF--------SRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGSE 231
Query: 676 ----------FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE---- 721
++G+R P C E V + C P P RPSF
Sbjct: 232 RDVPALSRLLELLEEGQRLPAPP----ACPAE----VHELMKLCWAPSPQDRPSFSALGP 283
Query: 722 --DVLWN 726
D+LW+
Sbjct: 284 QLDMLWS 290
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 119/287 (41%), Gaps = 44/287 (15%)
Query: 445 LSFMGEGSRGKLYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQHPHLVSL 501
L +G G G + G+ VAI+ + + + I+ KV ++ L H LV L
Sbjct: 14 LKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMN----LSHEKLVQL 69
Query: 502 LGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVH 561
G C + +F++ EY+ NG +L E + + L + V +A+
Sbjct: 70 YGVC--------TKQRPIFIITEYMANGCLLNYLREM--RHRFQTQQLLEMCKDVCEAME 119
Query: 562 FLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFL 620
+L S F +R L N L+++ + K+SD+G+S + + E + G
Sbjct: 120 YLESK----QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSK-------- 167
Query: 621 FICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQD 680
F R S V++ + + D++ FG ++ E + + E F +E A +Q
Sbjct: 168 FPVRWSPPEVLMY---SKFSSKSDIWAFGVLMWE--IYSLGKMPYERFTNSETAEHIAQG 222
Query: 681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWNL 727
R+ P + + V +I C + RP+F+ +L N+
Sbjct: 223 --LRLYRPHLAS-------EKVYTIMYSCWHEKADERPTFKILLSNI 260
>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN The Apo Form
pdb|3UG2|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Gefitinib
pdb|3VJN|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Amppnp
Length = 334
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 136/318 (42%), Gaps = 55/318 (17%)
Query: 419 LGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLT 473
+G + A L LKE F + + G+ G +YKG + G V AI+ L
Sbjct: 3 MGIRSGEAPNQALLRILKE--TEFKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELR 60
Query: 474 FLKKYSIQNLKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS 530
+ S + K LD ++ + +PH+ LLG C+ T+ V L+ + +P G
Sbjct: 61 --EATSPKANKEILDEAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGC 109
Query: 531 ----YRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH 586
R H + +L W + +AK +++L + L N+L+
Sbjct: 110 LLDYVREHKDNIGSQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTP 160
Query: 587 RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVY 646
+ K++D+G++ ++ EK E EG K ++ + E+++ + ++ DV+
Sbjct: 161 QHVKITDFGLAKLLGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVW 210
Query: 647 NFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSIT 706
++G + E + + + +E++S + G R P+ C+ + I+V
Sbjct: 211 SYGVTVWELMT--FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV--- 260
Query: 707 NKCICPEPSSRPSFEDVL 724
KC + SRP F +++
Sbjct: 261 -KCWMIDADSRPKFRELI 277
>pdb|3B2T|A Chain A, Structure Of Phosphotransferase
pdb|3B2T|B Chain B, Structure Of Phosphotransferase
Length = 311
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 24/117 (20%)
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------------ENCP 540
+H ++++LLG C + G ++++ EY G+ R +L P
Sbjct: 86 KHKNIINLLGACTQDGP--------LYVIVEYASKGNLREYLRARRPPGMEYSYDINRVP 137
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
E + + D ++ +A+ + +L S LT N+L+ E+ + K++D+G++
Sbjct: 138 EEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLTARNVLVTENNVMKIADFGLA 191
>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 63/314 (20%), Positives = 128/314 (40%), Gaps = 77/314 (24%)
Query: 448 MGEGSRGK--------LYKGRLENGTYVAIRSL-TFLKKYSIQNLKVRLDFLSKL-QHPH 497
+GEG+ G+ L K + T VA++ L + + + +L ++ + + +H +
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 95
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------------ENCPENVL 544
+++LLG C + G ++++ EY G+ R +L + PE L
Sbjct: 96 IINLLGACTQDGP--------LYVIVEYASKGNLREYLQARRPPGLEFSFNPSHNPEEQL 147
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE 604
D ++ VA+ + +L S L N+L+ E + K++D+G++ + +
Sbjct: 148 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 204
Query: 605 --------KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
+L K P+A + ++ ++ DV++FG +L E
Sbjct: 205 XXKKTTNGRLPVKWMAPEALFDRIYTHQS------------------DVWSFGVLLWE-- 244
Query: 657 VGPIVTGKGEAF---LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPE 713
I T G + + E+ F R+ P + C+ E + + C
Sbjct: 245 ---IFTLGGSPYPGVPVEEL--FKLLKEGHRMDKP---SNCTNE----LYMMMRDCWHAV 292
Query: 714 PSSRPSFEDVLWNL 727
PS RP+F+ ++ +L
Sbjct: 293 PSQRPTFKQLVEDL 306
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 131 FGAIPSGISRLVRLQTLTMDTNFFDDN-VPDWWDSLSNLTVLSLKSNQLKGQFPSSICRI 189
F I +G+S L + L M N F +N +PD + L NLT L L QL+ P++ +
Sbjct: 142 FNGIFNGLSSL---EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198
Query: 190 ATLTDIAMS-NNELSGKLPDMSALTSLHVLDLRENKLDSG----LPLMPKGLVTVLLSRN 244
++L + MS NN S L SL VLD N + + L P L + L++N
Sbjct: 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
Query: 245 LFSGAIPQQ 253
F+ Q
Sbjct: 259 DFACTCEHQ 267
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 110 LPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMD-TNFFD-DNVPDWWDSLSN 167
LPD L +L LD+S L P+ + L LQ L M NFF D P + L++
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNS 224
Query: 168 LTVLSLKSNQL---KGQ----FPSSI 186
L VL N + K Q FPSS+
Sbjct: 225 LQVLDYSLNHIMTSKKQELQHFPSSL 250
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 28/130 (21%)
Query: 166 SNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGK----LPDMSALTSLHVLDLR 221
S+ T L L+SN+L+ ++ LT +++S+N LS K D TSL LDL
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT-TSLKYLDLS 86
Query: 222 ENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPP-SVLFS 280
N G++T + F L QL+HLD ++L + SV S
Sbjct: 87 FN-----------GVIT-----------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124
Query: 281 LPNISYLHLA 290
L N+ YL ++
Sbjct: 125 LRNLIYLDIS 134
>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s)
Length = 334
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 136/318 (42%), Gaps = 55/318 (17%)
Query: 419 LGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLT 473
+G + A L LKE F + + G+ G +YKG + G V AI+ L
Sbjct: 3 MGIRSGEAPNQALLRILKE--TEFKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELR 60
Query: 474 FLKKYSIQNLKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS 530
+ S + K LD ++ + +PH+ LLG C+ T+ V L+ + +P G
Sbjct: 61 --EATSPKANKEILDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGC 109
Query: 531 ----YRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEH 586
R H + +L W + +AK +++L + L N+L+
Sbjct: 110 LLDYVREHKDNIGSQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTP 160
Query: 587 RIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVY 646
+ K++D+G++ ++ EK E EG K ++ + E+++ + ++ DV+
Sbjct: 161 QHVKITDFGLAKLLGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVW 210
Query: 647 NFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSIT 706
++G + E + + + +E++S + G R P+ C+ + I+V
Sbjct: 211 SYGVTVWELMT--FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV--- 260
Query: 707 NKCICPEPSSRPSFEDVL 724
KC + SRP F +++
Sbjct: 261 -KCWMIDADSRPKFRELI 277
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase Domain
Co-crystallized With Gefitinib
Length = 329
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 131/305 (42%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 11 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 66
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 67 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIG 117
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G + +
Sbjct: 118 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGRAKL 168
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 169 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 216
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + V I KC + SRP
Sbjct: 217 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTID----VYMIMRKCWMIDADSRPK 267
Query: 720 FEDVL 724
F +++
Sbjct: 268 FRELI 272
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 132/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 11 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 66
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 67 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIG 117
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G + +
Sbjct: 118 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGRAKL 168
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 169 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 216
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + I+V KC + SRP
Sbjct: 217 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 267
Query: 720 FEDVL 724
F +++
Sbjct: 268 FRELI 272
>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine
Length = 353
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 23/166 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRL-ENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKL--- 493
+NF+ + +G+GS GK+ R+ E G A++ L K +Q+ V K
Sbjct: 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLK--KDVILQDDDVECTMTEKRILS 78
Query: 494 ---QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRL 550
HP L L C ++ +++F V E++ G H+ ++ + +
Sbjct: 79 LARNHPFLTQLFC-CFQT-------PDRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYA 130
Query: 551 AILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
A +I A+ FLH G L +N+LLD KL+D+G+
Sbjct: 131 AEIIS---ALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGM 170
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 132/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 13 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 68
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 69 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLIMQLMPFGCLLDYVREHKDNIG 119
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G + +
Sbjct: 120 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGRAKL 170
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 171 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 218
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + I+V KC + SRP
Sbjct: 219 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 269
Query: 720 FEDVL 724
F +++
Sbjct: 270 FRELI 274
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 131 FGAIPSGISRLVRLQTLTMDTNFFDDN-VPDWWDSLSNLTVLSLKSNQLKGQFPSSICRI 189
F I +G+S L + L M N F +N +PD + L NLT L L QL+ P++ +
Sbjct: 461 FNGIFNGLSSL---EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 517
Query: 190 ATLTDIAMS-NNELSGKLPDMSALTSLHVLDLRENKLDSG----LPLMPKGLVTVLLSRN 244
++L + MS NN S L SL VLD N + + L P L + L++N
Sbjct: 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577
Query: 245 LFSGAIPQQ 253
F+ Q
Sbjct: 578 DFACTCEHQ 586
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 110 LPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMD-TNFFD-DNVPDWWDSLSN 167
LPD L +L LD+S L P+ + L LQ L M NFF D P + L++
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNS 543
Query: 168 LTVLSLKSNQL---KGQ----FPSSI 186
L VL N + K Q FPSS+
Sbjct: 544 LQVLDYSLNHIMTSKKQELQHFPSSL 569
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 164 SLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNEL-SGKLPDMSALTSLHVLDLRE 222
S L VL L +++ + ++ L+ + ++ N + S L S L+SL L E
Sbjct: 74 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133
Query: 223 NKLDSGLPLMPKGLVTVL----LSRNLF-SGAIPQQFGELAQLQHLDLSFNDLSGI 273
L S L P G + L ++ NL S +P+ F L L+HLDLS N + I
Sbjct: 134 TNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 437 EATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKL 493
E NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L
Sbjct: 7 EFMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL 66
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRL 550
HP++V LL NK++LV+E++ + A P ++K
Sbjct: 67 NHPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK----- 113
Query: 551 AILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ L + + + F HS + L N+L++ KL+D+G++
Sbjct: 114 SYLFQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 157
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 437 EATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKL 493
E NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L
Sbjct: 7 EFMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL 66
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRL 550
HP++V LL NK++LV+E++ + A P ++K
Sbjct: 67 NHPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK----- 113
Query: 551 AILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ L + + + F HS + L N+L++ KL+D+G++
Sbjct: 114 SYLFQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 157
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 133/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 6 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 61
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 62 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 112
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +A+ +++L + L N+L+ + K++D+G++ +
Sbjct: 113 SQYLLNWC------VQIAEGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 163
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 164 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 211
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + I+V KC + SRP
Sbjct: 212 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 262
Query: 720 FEDVL 724
F +++
Sbjct: 263 FRELI 267
>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|C Chain C, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|D Chain D, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|E Chain E, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|F Chain F, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
Length = 384
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 79/167 (47%), Gaps = 22/167 (13%)
Query: 440 NNFDSLSFMGEGSRGKL-YKGRLENGTYVAIRSLTFLK---KYSIQNLKVRLDFLSKLQH 495
++F+ L +G+GS GK+ + + A++ + K + ++N+ L + L+H
Sbjct: 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEH 74
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC--PENVLKWSDRLAIL 553
P LV+L QD+ + +F+V + + G R HL +N E +K +
Sbjct: 75 PFLVNLW-----YSFQDEED---MFMVVDLLLGGDLRYHLQQNVHFKEETVK-----LFI 121
Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ A+ +L + I + +NILLDEH ++D+ I+ ++
Sbjct: 122 CELVMALDYLQNQRI---IHRDMKPDNILLDEHGHVHITDFNIAAML 165
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 131/305 (42%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 11 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 66
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 67 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 117
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G + +
Sbjct: 118 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGRAKL 168
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 169 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 216
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + V I KC + SRP
Sbjct: 217 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTID----VYMIMRKCWMIDADSRPK 267
Query: 720 FEDVL 724
F +++
Sbjct: 268 FRELI 272
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Query: 169 TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSG 228
T+L L N L +++ LT + + EL+ KL L L LDL N+L S
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELT-KLQVDGTLPVLGTLDLSHNQLQS- 91
Query: 229 LPLMPKGL--VTVL-LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNIS 285
LPL+ + L +TVL +S N + L +LQ L L N+L +PP +L P +
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 286 YLHLASNMLSGTLPKDLSCG-SKLDSI 311
L LA+N L+ LP L G LD++
Sbjct: 152 KLSLANNQLT-ELPAGLLNGLENLDTL 177
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 132/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + +G G+ G +YKG + G V AI+ L + S + K
Sbjct: 9 LRILKE--TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 64
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 65 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 115
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G + +
Sbjct: 116 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGRAKL 166
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 167 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 214
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + I+V KC + SRP
Sbjct: 215 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 265
Query: 720 FEDVL 724
F +++
Sbjct: 266 FRELI 270
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Query: 169 TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSG 228
T+L L N L +++ LT + + EL+ KL L L LDL N+L S
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELT-KLQVDGTLPVLGTLDLSHNQLQS- 91
Query: 229 LPLMPKGL--VTVL-LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNIS 285
LPL+ + L +TVL +S N + L +LQ L L N+L +PP +L P +
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 286 YLHLASNMLSGTLPKDLSCG-SKLDSI 311
L LA+N L+ LP L G LD++
Sbjct: 152 KLSLANNQLT-ELPAGLLNGLENLDTL 177
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 78/167 (46%), Gaps = 22/167 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTF---LKKYSIQN-LKVRLDFLSKL 493
A +F+ +G+G G +Y R + ++ + F L+K +++ L+ ++ S L
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSD-RLAI 552
+HP+++ L G+ + +V+L+ EY P G L + + K+ + R A
Sbjct: 71 RHPNILRLYGYF--------HDATRVYLILEYAPRGEVYKEL-----QKLSKFDEQRTAT 117
Query: 553 LIG-VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI 598
I +A A+ + HS + + N+LL K++D+G S+
Sbjct: 118 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSV 161
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 78/167 (46%), Gaps = 22/167 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTF---LKKYSIQN-LKVRLDFLSKL 493
A +F+ +G+G G +Y R + ++ + F L+K +++ L+ ++ S L
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSD-RLAI 552
+HP+++ L G+ + +V+L+ EY P G L + + K+ + R A
Sbjct: 71 RHPNILRLYGYF--------HDATRVYLILEYAPRGEVYKEL-----QKLSKFDEQRTAT 117
Query: 553 LIG-VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI 598
I +A A+ + HS + + N+LL K++D+G S+
Sbjct: 118 YITELANALSYCHSKRV---IHRDIKPENLLLGSAGELKIADFGWSV 161
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 118/311 (37%), Gaps = 48/311 (15%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYK------GRLENGTYVAIRSL-TFLKKYSIQNL 483
Y E+ + NN +G G+ GK+ + G+ + VA++ L + + L
Sbjct: 37 YNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEAL 96
Query: 484 KVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPEN 542
L +S L QH ++V+LLG C G V ++ EY G L
Sbjct: 97 MSELKIMSHLGQHENIVNLLGACTHGGP--------VLVITEYCCYGDLLNFLRRK--SR 146
Query: 543 VLKWSDRLAILIGVAKAVHFLH--SSVISG--------SFSNRLTTNNILLDEHRIAKLS 592
VL+ AI A LH S V G + N+LL +AK+
Sbjct: 147 VLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIG 206
Query: 593 DYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFIL 652
D+G++ + KG AR ++ S + V V + DV+++G +L
Sbjct: 207 DFGLARDIMNDSNYIVKG---NARLPVKWMAPESIFDCVYTV-------QSDVWSYGILL 256
Query: 653 LESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICP 712
E + + L+N +DG ++ P + + SI C
Sbjct: 257 WE--IFSLGLNPYPGILVNSKFYKLVKDG-YQMAQPAF-------APKNIYSIMQACWAL 306
Query: 713 EPSSRPSFEDV 723
EP+ RP+F+ +
Sbjct: 307 EPTHRPTFQQI 317
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 26/187 (13%)
Query: 414 SQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGT--YVAIRS 471
S V LGT+ +++ EEL F L +G+GS G+++KG ++N T VAI+
Sbjct: 8 SSGVDLGTENL-YFQSMDPEEL------FTKLEKIGKGSFGEVFKG-IDNRTQKVVAIKI 59
Query: 472 LTFLKKYSIQNL-KVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS 530
+ + + + LS+ P++ G ++ K++++ EY+ GS
Sbjct: 60 IDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKD--------TKLWIIMEYLGGGS 111
Query: 531 YRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAK 590
L E P L + IL + K + +LHS + N+LL EH K
Sbjct: 112 -ALDLLEPGP---LDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVK 164
Query: 591 LSDYGIS 597
L+D+G++
Sbjct: 165 LADFGVA 171
>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf
Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp
Analog And Substrate Peptide
Length = 334
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/173 (19%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 448 MGEGSRGKLY--------KGRLENGTYVAIRSLTF-LKKYSIQNLKVRLDFLSKL-QHPH 497
+GEG+ G++ K + + VA++ L + + +L ++ + + +H +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------------ENCPENVL 544
+++LLG C + G ++++ EY G+ R +L PE +
Sbjct: 103 IINLLGACTQDGP--------LYVIVEYASKGNLREYLRARRPPGMEXSYDINRVPEEQM 154
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ D ++ +A+ + +L S L N+L+ E+ + K++D+G++
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLA 204
>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
Length = 327
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 17/160 (10%)
Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL--TFLKKYSIQNLKVRLDFLSKLQHPH 497
N+ L +G+G+ K+ R + G VA+R + T L S+Q L + + L HP+
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFREVRIMKVLNHPN 74
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
+V L IE+ ++LV EY G +L +K + A +
Sbjct: 75 IVKLF-EVIET-------EKTLYLVMEYASGGEVFDYL---VAHGRMKEKEARAKFRQIV 123
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
AV + H I L N+LLD K++D+G S
Sbjct: 124 SAVQYCHQKFI---VHRDLKAENLLLDADMNIKIADFGFS 160
>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
pdb|3RHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
Length = 306
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/313 (20%), Positives = 129/313 (41%), Gaps = 75/313 (23%)
Query: 448 MGEGSRGK--------LYKGRLENGTYVAIRSL-TFLKKYSIQNLKVRLDFLSKL-QHPH 497
+GEG+ G+ L K + T VA++ L + + + +L ++ + + +H +
Sbjct: 25 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 84
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------------ENCPENVL 544
+++LLG C + G ++++ EY G+ R +L + PE L
Sbjct: 85 IINLLGACTQDGP--------LYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQL 136
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE 604
D ++ VA+ + +L S L N+L+ E + K++D+G++ + +
Sbjct: 137 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 193
Query: 605 --------KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE-- 654
+L K P+A + ++ ++ DV++FG +L E
Sbjct: 194 YYKKTTNGRLPVKWMAPEALFDRIYTHQS------------------DVWSFGVLLWEIF 235
Query: 655 SLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEP 714
+L G G L + ++G R+ P + C+ E + + C P
Sbjct: 236 TLGGSPYPGVPVEELFKLL-----KEG-HRMDKP---SNCTNE----LYMMMRDCWHAVP 282
Query: 715 SSRPSFEDVLWNL 727
S RP+F+ ++ +L
Sbjct: 283 SQRPTFKQLVEDL 295
>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGK|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1AGW|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|1AGW|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|2FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
pdb|2FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
Length = 310
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/314 (19%), Positives = 128/314 (40%), Gaps = 77/314 (24%)
Query: 448 MGEGSRGK--------LYKGRLENGTYVAIRSL-TFLKKYSIQNLKVRLDFLSKL-QHPH 497
+GEG+ G+ L K + T VA++ L + + + +L ++ + + +H +
Sbjct: 29 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 88
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------------ENCPENVL 544
+++LLG C + G ++++ EY G+ R +L + PE L
Sbjct: 89 IINLLGACTQDGP--------LYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQL 140
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE 604
D ++ VA+ + +L S L N+L+ E + K++D+G++ + +
Sbjct: 141 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 197
Query: 605 --------KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
+L K P+A + ++ ++ DV++FG +L E
Sbjct: 198 YYKKTTNGRLPVKWMAPEALFDRIYTHQS------------------DVWSFGVLLWE-- 237
Query: 657 VGPIVTGKGEAF---LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPE 713
I T G + + E+ + R+ P + C+ E + + C
Sbjct: 238 ---IFTLGGSPYPGVPVEELFKLLKEG--HRMDKP---SNCTNE----LYMMMRDCWHAV 285
Query: 714 PSSRPSFEDVLWNL 727
PS RP+F+ ++ +L
Sbjct: 286 PSQRPTFKQLVEDL 299
>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F63|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F64|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F64|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F65|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
pdb|4F65|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
Length = 309
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/314 (19%), Positives = 128/314 (40%), Gaps = 77/314 (24%)
Query: 448 MGEGSRGK--------LYKGRLENGTYVAIRSL-TFLKKYSIQNLKVRLDFLSKL-QHPH 497
+GEG+ G+ L K + T VA++ L + + + +L ++ + + +H +
Sbjct: 28 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 87
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------------ENCPENVL 544
+++LLG C + G ++++ EY G+ R +L + PE L
Sbjct: 88 IINLLGACTQDGP--------LYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQL 139
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE 604
D ++ VA+ + +L S L N+L+ E + K++D+G++ + +
Sbjct: 140 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 196
Query: 605 --------KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
+L K P+A + ++ ++ DV++FG +L E
Sbjct: 197 YYKKTTNGRLPVKWMAPEALFDRIYTHQS------------------DVWSFGVLLWE-- 236
Query: 657 VGPIVTGKGEAF---LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPE 713
I T G + + E+ + R+ P + C+ E + + C
Sbjct: 237 ---IFTLGGSPYPGVPVEELFKLLKEG--HRMDKP---SNCTNE----LYMMMRDCWHAV 284
Query: 714 PSSRPSFEDVLWNL 727
PS RP+F+ ++ +L
Sbjct: 285 PSQRPTFKQLVEDL 298
>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZ5|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/173 (19%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 448 MGEGSRGKLY--------KGRLENGTYVAIRSLTF-LKKYSIQNLKVRLDFLSKL-QHPH 497
+GEG+ G++ K + + VA++ L + + +L ++ + + +H +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------------ENCPENVL 544
+++LLG C + G ++++ EY G+ R +L PE +
Sbjct: 103 IITLLGACTQDGP--------LYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 154
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ D ++ +A+ + +L S L N+L+ E+ + K++D+G++
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLA 204
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQ 494
+ NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLA 551
HP++V LL NK++LV+E++ + A P ++K +
Sbjct: 64 HPNIVKLLDVI--------HTENKLYLVFEHVDQDLKKFMDASALTGIPLPLIK-----S 110
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
L + + + F HS + L N+L++ KL+D+G++
Sbjct: 111 YLFQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 153
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/314 (19%), Positives = 128/314 (40%), Gaps = 77/314 (24%)
Query: 448 MGEGSRGK--------LYKGRLENGTYVAIRSL-TFLKKYSIQNLKVRLDFLSKL-QHPH 497
+GEG+ G+ L K + T VA++ L + + + +L ++ + + +H +
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 95
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------------ENCPENVL 544
+++LLG C + G ++++ EY G+ R +L + PE L
Sbjct: 96 IINLLGACTQDGP--------LYVIVEYASKGNLREYLQAREPPGLEYSYNPSHNPEEQL 147
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE 604
D ++ VA+ + +L S L N+L+ E + K++D+G++ + +
Sbjct: 148 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 204
Query: 605 --------KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
+L K P+A + ++ ++ DV++FG +L E
Sbjct: 205 YYKKTTNGRLPVKWMAPEALFDRIYTHQS------------------DVWSFGVLLWE-- 244
Query: 657 VGPIVTGKGEAF---LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPE 713
I T G + + E+ + R+ P + C+ E + + C
Sbjct: 245 ---IFTLGGSPYPGVPVEELFKLLKEG--HRMDKP---SNCTNE----LYMMMRDCWHAV 292
Query: 714 PSSRPSFEDVLWNL 727
PS RP+F+ ++ +L
Sbjct: 293 PSQRPTFKQLVEDL 306
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 122/312 (39%), Gaps = 50/312 (16%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYK------GRLENGTYVAIRSL-TFLKKYSIQNL 483
Y E+ + NN +G G+ GK+ + G+ + VA++ L + + L
Sbjct: 37 YNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEAL 96
Query: 484 KVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSY------RAHLS 536
L +S L QH ++V+LLG C G V ++ EY G ++ +
Sbjct: 97 MSELKIMSHLGQHENIVNLLGACTHGGP--------VLVITEYCCYGDLLNFLRRKSRVL 148
Query: 537 ENCP-----ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL 591
E P + L D L VA+ + FL S + N+LL +AK+
Sbjct: 149 ETDPAFAIANSTLSTRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVLLTNGHVAKI 205
Query: 592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFI 651
D+G++ + KG AR ++ S + V V + DV+++G +
Sbjct: 206 GDFGLARDIMNDSNYIVKG---NARLPVKWMAPESIFDCVYTV-------QSDVWSYGIL 255
Query: 652 LLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCIC 711
L E + + L+N +DG ++ P + + SI C
Sbjct: 256 LWE--IFSLGLNPYPGILVNSKFYKLVKDG-YQMAQPAF-------APKNIYSIMQACWA 305
Query: 712 PEPSSRPSFEDV 723
EP+ RP+F+ +
Sbjct: 306 LEPTHRPTFQQI 317
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Query: 169 TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSG 228
T+L L N L +++ LT + + EL+ KL L L LDL N+L S
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLSHNQLQS- 91
Query: 229 LPLMPKGL--VTVL-LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNIS 285
LPL+ + L +TVL +S N + L +LQ L L N+L +PP +L P +
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 286 YLHLASNMLSGTLPKDLSCG-SKLDSI 311
L LA+N L+ LP L G LD++
Sbjct: 152 KLSLANNNLT-ELPAGLLNGLENLDTL 177
>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3JS2|B Chain B, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3KY2|A Chain A, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
pdb|3KY2|B Chain B, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
Length = 317
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/314 (19%), Positives = 128/314 (40%), Gaps = 77/314 (24%)
Query: 448 MGEGSRGK--------LYKGRLENGTYVAIRSL-TFLKKYSIQNLKVRLDFLSKL-QHPH 497
+GEG+ G+ L K + T VA++ L + + + +L ++ + + +H +
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 95
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------------ENCPENVL 544
+++LLG C + G ++++ EY G+ R +L + PE L
Sbjct: 96 IINLLGACTQDGP--------LYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQL 147
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE 604
D ++ VA+ + +L S L N+L+ E + K++D+G++ + +
Sbjct: 148 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 204
Query: 605 --------KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
+L K P+A + ++ ++ DV++FG +L E
Sbjct: 205 YYKKTTNGRLPVKWMAPEALFDRIYTHQS------------------DVWSFGVLLWE-- 244
Query: 657 VGPIVTGKGEAF---LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPE 713
I T G + + E+ + R+ P + C+ E + + C
Sbjct: 245 ---IFTLGGSPYPGVPVEELFKLLKEG--HRMDKP---SNCTNE----LYMMMRDCWHAV 292
Query: 714 PSSRPSFEDVLWNL 727
PS RP+F+ ++ +L
Sbjct: 293 PSQRPTFKQLVEDL 306
>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|B Chain B, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|C Chain C, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
Length = 360
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 101/254 (39%), Gaps = 42/254 (16%)
Query: 433 EELKEATNNFDS--------LSFMGEGSRGKLY----KGRLENGTYVAIRSLTFLKKYSI 480
E+ K+ +NN D L +G+GS GK+ KG E ++ ++ +
Sbjct: 4 EDRKQPSNNLDRVKLTDFNFLMVLGKGSFGKVMLADRKGTEELYAIKILKKDVVIQDDDV 63
Query: 481 QNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCP 540
+ V L+ L P ++ L C ++ ++++ V EY+ G H+
Sbjct: 64 ECTMVEKRVLALLDKPPFLTQLHSCFQT-------VDRLYFVMEYVNGGDLMYHI----- 111
Query: 541 ENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI 598
+ V K+ + A+ ++ + FLH G L +N++LD K++D+G+
Sbjct: 112 QQVGKFKEPQAVFYAAEISIGLFFLHKR---GIIYRDLKLDNVMLDSEGHIKIADFGMC- 167
Query: 599 IMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVG 658
+EH +G R C T ++ Q D + +G +L E L G
Sbjct: 168 --KEHMM-----DGVTTRE----FCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAG 216
Query: 659 -PIVTGKGEAFLLN 671
P G+ E L
Sbjct: 217 QPPFDGEDEDELFQ 230
>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains
Trapped In Trans-Phosphorylation Reaction
Length = 334
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/173 (19%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 448 MGEGSRGKLY--------KGRLENGTYVAIRSLTF-LKKYSIQNLKVRLDFLSKL-QHPH 497
+GEG+ G++ K + + VA++ L + + +L ++ + + +H +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------------ENCPENVL 544
+++LLG C + G ++++ EY G+ R +L PE +
Sbjct: 103 IINLLGACTQDGP--------LYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 154
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ D ++ +A+ + +L S L N+L+ E+ + K++D+G++
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLA 204
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Query: 169 TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSG 228
T+L L N L +++ LT + + EL+ KL L L LDL N+L S
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLSHNQLQS- 91
Query: 229 LPLMPKGL--VTVL-LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNIS 285
LPL+ + L +TVL +S N + L +LQ L L N+L +PP +L P +
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 286 YLHLASNMLSGTLPKDLSCG-SKLDSI 311
L LA+N L+ LP L G LD++
Sbjct: 152 KLSLANNNLT-ELPAGLLNGLENLDTL 177
>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
Length = 327
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 17/160 (10%)
Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL--TFLKKYSIQNLKVRLDFLSKLQHPH 497
N+ L +G+G+ K+ R + G VA+R + T L S+Q L + + L HP+
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFREVRIMKVLNHPN 74
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
+V L IE+ ++LV EY G +L +K + A +
Sbjct: 75 IVKLF-EVIET-------EKTLYLVMEYASGGEVFDYL---VAHGRMKEKEARAKFRQIV 123
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
AV + H I L N+LLD K++D+G S
Sbjct: 124 SAVQYCHQKFI---VHRDLKAENLLLDADMNIKIADFGFS 160
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Query: 169 TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSG 228
T+L L N L +++ LT + + EL+ KL L L LDL N+L S
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLSHNQLQS- 91
Query: 229 LPLMPKGL--VTVL-LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNIS 285
LPL+ + L +TVL +S N + L +LQ L L N+L +PP +L P +
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 286 YLHLASNMLSGTLPKDLSCG-SKLDSI 311
L LA+N L+ LP L G LD++
Sbjct: 152 KLSLANNNLT-ELPAGLLNGLENLDTL 177
>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site
Inhibitor Showing High Selectivity Within The Janus
Kinase Family
Length = 315
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 115/307 (37%), Gaps = 56/307 (18%)
Query: 445 LSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLV 499
+S +G+G+ G + R + G VA++ L ++ + + L L +V
Sbjct: 16 ISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIV 75
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKA 559
G G Q + LV EY+P+G R L + L S L + K
Sbjct: 76 KYRGVSYGPGRQ------SLRLVMEYLPSGCLRDFLQRH--RARLDASRLLLYSSQICKG 127
Query: 560 VHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEGPKAR 616
+ +L S L NIL++ K++D+G++ ++ +++ + G+ P
Sbjct: 128 MEYLGSRRC---VHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPI-- 182
Query: 617 YGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA-- 674
F + + ++N+ + DV++FG +L E + A L M
Sbjct: 183 --FWYAPESLSDNIF--------SRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCE 232
Query: 675 ---------SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE---- 721
++G+R P C E V + C P P RPSF
Sbjct: 233 RDVPALCRLLELLEEGQRLPAPP----ACPAE----VHELMKLCWAPSPQDRPSFSALGP 284
Query: 722 --DVLWN 726
D+LW+
Sbjct: 285 QLDMLWS 291
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQ 494
+ NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLA 551
HP++V LL NK++LV+E++ + A P ++K +
Sbjct: 62 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----S 108
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
L + + + F HS + L N+L++ KL+D+G++
Sbjct: 109 YLFQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 151
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQ 494
+ NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L
Sbjct: 5 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 64
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLA 551
HP++V LL NK++LV+E++ + A P ++K +
Sbjct: 65 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----S 111
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
L + + + F HS + L N+L++ KL+D+G++
Sbjct: 112 YLFQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 154
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Query: 169 TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSG 228
T+L L N L +++ LT + + EL+ KL L L LDL N+L S
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELT-KLQVDGTLPVLGTLDLSHNQLQS- 91
Query: 229 LPLMPKGL--VTVL-LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNIS 285
LPL+ + L +TVL +S N + L +LQ L L N+L +PP +L P +
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 286 YLHLASNMLSGTLPKDLSCG-SKLDSI 311
L LA+N L+ LP L G LD++
Sbjct: 152 KLSLANNQLT-ELPAGLLNGLENLDTL 177
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQ 494
+ NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLA 551
HP++V LL NK++LV+E++ + A P ++K +
Sbjct: 61 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----S 107
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
L + + + F HS + L N+L++ KL+D+G++
Sbjct: 108 YLFQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 150
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Query: 169 TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSG 228
T+L L N L +++ LT + + EL+ KL L L LDL N+L S
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELT-KLQVDGTLPVLGTLDLSHNQLQS- 91
Query: 229 LPLMPKGL--VTVL-LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNIS 285
LPL+ + L +TVL +S N + L +LQ L L N+L +PP +L P +
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 286 YLHLASNMLSGTLPKDLSCG-SKLDSI 311
L LA+N L+ LP L G LD++
Sbjct: 152 KLSLANNQLT-ELPAGLLNGLENLDTL 177
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQ 494
+ NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLA 551
HP++V LL NK++LV+E++ + A P ++K +
Sbjct: 64 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----S 110
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
L + + + F HS + L N+L++ KL+D+G++
Sbjct: 111 YLFQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 153
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQ 494
+ NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLA 551
HP++V LL NK++LV+E++ + A P ++K +
Sbjct: 63 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----S 109
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
L + + + F HS + L N+L++ KL+D+G++
Sbjct: 110 YLFQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 152
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQ 494
+ NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLA 551
HP++V LL NK++LV+E++ + A P ++K +
Sbjct: 64 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----S 110
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
L + + + F HS + L N+L++ KL+D+G++
Sbjct: 111 YLFQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 153
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 8/159 (5%)
Query: 147 LTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSIC--RIATLTDIAMSNNELSG 204
L N F D+V +L L L L+ N LK F ++ +++L + +S N L+
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 205 KLPDMSA--LTSLHVLDLRENKLDSGL--PLMPKGLVTVLLSRNLFSGAIPQQFGELAQL 260
D + S+ VL+L N L + L PK V VL N +IP+ L L
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIMSIPKDVTHLQAL 475
Query: 261 QHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLP 299
Q L+++ N L +P V L ++ Y+ L N T P
Sbjct: 476 QELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 195 IAMSNNELSG-KLPDMSALTSLHVLDLRENK---LDSGLPLMPKGLVTVLLSRNLFSGAI 250
+++S N +S ++PD+S L+ L VL L N+ LD + L + L + +S N
Sbjct: 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI- 115
Query: 251 PQQFGELAQLQHLDLSFNDLSGIPPSVLF-SLPNISYLHLAS 291
+A L+HLDLSFND +P F +L +++L L++
Sbjct: 116 --SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA 155
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 22/164 (13%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQHP 496
NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L HP
Sbjct: 7 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 66
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLAIL 553
++V LL NK++LV+E++ + A P ++K + L
Sbjct: 67 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----SYL 113
Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ + + F HS + L N+L++ KL+D+G++
Sbjct: 114 FQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 154
>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXL|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 327
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/312 (20%), Positives = 116/312 (37%), Gaps = 56/312 (17%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ 494
+ +S +G+G+ G + R + G VA++ L ++ + + L L
Sbjct: 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALH 82
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
+V G G Q + LV EY+P+G R L + L S L
Sbjct: 83 SDFIVKYRGVSYGPGRQ------SLRLVMEYLPSGCLRDFLQRH--RARLDASRLLLYSS 134
Query: 555 GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGE 611
+ K + +L S L NIL++ K++D+G++ ++ +++ + G+
Sbjct: 135 QICKGMEYLGSRRC---VHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQ 191
Query: 612 GPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLN 671
P F + + ++N+ + DV++FG +L E + A L
Sbjct: 192 SPI----FWYAPESLSDNIF--------SRQSDVWSFGVVLYELFTYCDKSCSPSAEFLR 239
Query: 672 EMA-----------SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
M ++G+R P C E V + C P P RPSF
Sbjct: 240 MMGCERDVPALSRLLELLEEGQRLPAPP----ACPAE----VHELMKLCWAPSPQDRPSF 291
Query: 721 E------DVLWN 726
D+LW+
Sbjct: 292 SALGPQLDMLWS 303
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQ 494
+ NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLA 551
HP++V LL NK++LV+E++ + A P ++K +
Sbjct: 63 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----S 109
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
L + + + F HS + L N+L++ KL+D+G++
Sbjct: 110 YLFQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 152
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQ 494
+ NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLA 551
HP++V LL NK++LV+E++ + A P ++K +
Sbjct: 62 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----S 108
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
L + + + F HS + L N+L++ KL+D+G++
Sbjct: 109 YLFQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 151
>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
Length = 382
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/314 (19%), Positives = 128/314 (40%), Gaps = 77/314 (24%)
Query: 448 MGEGSRGK--------LYKGRLENGTYVAIRSL-TFLKKYSIQNLKVRLDFLSKL-QHPH 497
+GEG+ G+ L K + T VA++ L + + + +L ++ + + +H +
Sbjct: 77 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 136
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------------ENCPENVL 544
+++LLG C + G ++++ EY G+ R +L + PE L
Sbjct: 137 IINLLGACTQDGP--------LYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQL 188
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE 604
D ++ VA+ + +L S L N+L+ E + K++D+G++ + +
Sbjct: 189 SSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 245
Query: 605 --------KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
+L K P+A + ++ ++ DV++FG +L E
Sbjct: 246 YYKKTTNGRLPVKWMAPEALFDRIYTHQS------------------DVWSFGVLLWE-- 285
Query: 657 VGPIVTGKGEAF---LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPE 713
I T G + + E+ + R+ P + C+ E + + C
Sbjct: 286 ---IFTLGGSPYPGVPVEELFKLLKEG--HRMDKP---SNCTNE----LYMMMRDCWHAV 333
Query: 714 PSSRPSFEDVLWNL 727
PS RP+F+ ++ +L
Sbjct: 334 PSQRPTFKQLVEDL 347
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 22/164 (13%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQHP 496
NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L HP
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLAIL 553
++V LL NK++LV+E++ + A P ++K + L
Sbjct: 63 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----SYL 109
Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ + + F HS + L N+L++ KL+D+G++
Sbjct: 110 FQLLQGLSFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 150
>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
pdb|2PZP|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/173 (19%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 448 MGEGSRGKLY--------KGRLENGTYVAIRSLTF-LKKYSIQNLKVRLDFLSKL-QHPH 497
+GEG+ G++ K + + VA++ L + + +L ++ + + +H +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEEDLSDLVSEMEMMKMIGKHKN 102
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------------ENCPENVL 544
+++LLG C + G ++++ EY G+ R +L PE +
Sbjct: 103 IINLLGACTQDGP--------LYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 154
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ D ++ +A+ + +L S L N+L+ E+ + K++D+G++
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLA 204
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQ 494
+ NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLA 551
HP++V LL NK++LV+E++ + A P ++K +
Sbjct: 61 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----S 107
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
L + + + F HS + L N+L++ KL+D+G++
Sbjct: 108 YLFQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 150
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQ 494
+ NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLA 551
HP++V LL NK++LV+E++ + A P ++K +
Sbjct: 61 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----S 107
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
L + + + F HS + L N+L++ KL+D+G++
Sbjct: 108 YLFQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 150
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 22/164 (13%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQHP 496
NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L HP
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLAIL 553
++V LL NK++LV+E++ + A P ++K + L
Sbjct: 62 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----SYL 108
Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ + + F HS + L N+L++ KL+D+G++
Sbjct: 109 FQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 149
>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Amp-Pnp
pdb|2ITO|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Iressa
pdb|2ITP|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Aee788
pdb|2ITQ|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Afn941
Length = 327
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 132/305 (43%), Gaps = 55/305 (18%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYV----AIRSLTFLKKYSIQNLKVR 486
L LKE F + + G+ G +YKG + G V AI+ L + S + K
Sbjct: 9 LRILKE--TEFKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELR--EATSPKANKEI 64
Query: 487 LD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS----YRAHLSENC 539
LD ++ + +PH+ LLG C+ T+ V L+ + +P G R H
Sbjct: 65 LDEAYVMASVDNPHVCRLLGICL---------TSTVQLITQLMPFGCLLDYVREHKDNIG 115
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISII 599
+ +L W + +AK +++L + L N+L+ + K++D+G++ +
Sbjct: 116 SQYLLNWC------VQIAKGMNYLEDRRL---VHRDLAARNVLVKTPQHVKITDFGLAKL 166
Query: 600 MEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP 659
+ EK E EG K ++ + E+++ + ++ DV+++G + E +
Sbjct: 167 LGAEEK-EYHAEGGKVPIKWM-----ALESILHRIYTHQS----DVWSYGVTVWELMT-- 214
Query: 660 IVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPS 719
+ + +E++S + G R P+ C+ + I+V KC + SRP
Sbjct: 215 FGSKPYDGIPASEISSI-LEKGERLPQPPI----CTIDVYMIMV----KCWMIDADSRPK 265
Query: 720 FEDVL 724
F +++
Sbjct: 266 FRELI 270
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 22/164 (13%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQHP 496
NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L HP
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLAIL 553
++V LL NK++LV+E++ + A P ++K + L
Sbjct: 63 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----SYL 109
Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ + + F HS + L N+L++ KL+D+G++
Sbjct: 110 FQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 150
>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|C Chain C, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|D Chain D, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome
Length = 324
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/173 (19%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 448 MGEGSRGKLY--------KGRLENGTYVAIRSLTF-LKKYSIQNLKVRLDFLSKL-QHPH 497
+GEG+ G++ K + + VA++ L + + +L ++ + + +H +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------------ENCPENVL 544
+++LLG C + G ++++ EY G+ R +L PE +
Sbjct: 103 IINLLGACTQDGP--------LYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 154
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ D ++ +A+ + +L S L N+L+ E+ + K++D+G++
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLA 204
>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
pdb|2PSQ|B Chain B, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
Length = 370
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 24/117 (20%)
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------------ENCP 540
+H ++++LLG C + G ++++ EY G+ R +L P
Sbjct: 145 KHKNIINLLGACTQDGP--------LYVIVEYASKGNLREYLRARRPPGMEYSYDINRVP 196
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
E + + D ++ +A+ + +L S L N+L+ E+ + K++D+G++
Sbjct: 197 EEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLA 250
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 22/164 (13%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQHP 496
NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L HP
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLAIL 553
++V LL NK++LV+E++ + A P ++K + L
Sbjct: 63 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----SYL 109
Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ + + F HS + L N+L++ KL+D+G++
Sbjct: 110 FQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 150
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 22/164 (13%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQHP 496
NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L HP
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLAIL 553
++V LL NK++LV+E++ + A P ++K + L
Sbjct: 62 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----SYL 108
Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ + + F HS + L N+L++ KL+D+G++
Sbjct: 109 FQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 149
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQ 494
+ NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLA 551
HP++V LL NK++LV+E++ + A P ++K +
Sbjct: 63 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----S 109
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
L + + + F HS + L N+L++ KL+D+G++
Sbjct: 110 YLFQLLQGLAFCHSHRV---LHRDLKPENLLINTEGAIKLADFGLA 152
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 22/164 (13%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQHP 496
NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L HP
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLAIL 553
++V LL NK++LV+E++ + A P ++K + L
Sbjct: 62 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----SYL 108
Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ + + F HS + L N+L++ KL+D+G++
Sbjct: 109 FQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 149
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQ 494
+ NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLA 551
HP++V LL NK++LV+E++ + A P ++K +
Sbjct: 62 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----S 108
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
L + + + F HS + L N+L++ KL+D+G++
Sbjct: 109 YLFQLLQGLAFCHSHRV---LHRDLKPENLLINTEGAIKLADFGLA 151
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQ 494
+ NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLA 551
HP++V LL NK++LV+E++ + A P ++K +
Sbjct: 61 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----S 107
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
L + + + F HS + L N+L++ KL+D+G++
Sbjct: 108 YLFQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 150
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 22/164 (13%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQHP 496
NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L HP
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLAIL 553
++V LL NK++LV+E++ + A P ++K + L
Sbjct: 62 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----SYL 108
Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ + + F HS + L N+L++ KL+D+G++
Sbjct: 109 FQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 149
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 22/164 (13%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQHP 496
NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L HP
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLAIL 553
++V LL NK++LV+E++ + A P ++K + L
Sbjct: 63 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----SYL 109
Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ + + F HS + L N+L++ KL+D+G++
Sbjct: 110 FQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 150
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
pdb|1OEC|A Chain A, Fgfr2 Kinase Domain
Length = 316
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 24/117 (20%)
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------------ENCP 540
+H ++++LLG C + G ++++ EY G+ R +L P
Sbjct: 91 KHKNIINLLGACTQDGP--------LYVIVEYASKGNLREYLRARRPPGMEYSYDINRVP 142
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
E + + D ++ +A+ + +L S L N+L+ E+ + K++D+G++
Sbjct: 143 EEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLA 196
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 22/164 (13%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQHP 496
NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L HP
Sbjct: 4 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 63
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLAIL 553
++V LL NK++LV+E++ + A P ++K + L
Sbjct: 64 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----SYL 110
Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ + + F HS + L N+L++ KL+D+G++
Sbjct: 111 FQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 151
>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
pdb|3RI1|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
Length = 313
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 24/117 (20%)
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------------ENCP 540
+H ++++LLG C + G ++++ EY G+ R +L P
Sbjct: 88 KHKNIINLLGACTQDGP--------LYVIVEYASKGNLREYLRARRPPGMEYSYDINRVP 139
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
E + + D ++ +A+ + +L S L N+L+ E+ + K++D+G++
Sbjct: 140 EEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLA 193
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQ 494
+ NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLA 551
HP++V LL NK++LV+E++ + A P ++K +
Sbjct: 64 HPNIVKLLDVI--------HTENKLYLVFEFLSMDLKKFMDASALTGIPLPLIK-----S 110
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
L + + + F HS + L N+L++ KL+D+G++
Sbjct: 111 YLFQLLQGLAFCHSHRV---LHRDLKPENLLINTEGAIKLADFGLA 153
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQ 494
+ NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLA 551
HP++V LL NK++LV+E++ + A P ++K +
Sbjct: 62 HPNIVKLLDVI--------HTENKLYLVFEFLSMDLKKFMDASALTGIPLPLIK-----S 108
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
L + + + F HS + L N+L++ KL+D+G++
Sbjct: 109 YLFQLLQGLAFCHSHRV---LHRDLKPENLLINTEGAIKLADFGLA 151
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 22/166 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQ 494
+ NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIP---NGSYRAHLSENCPENVLKWSDRLA 551
HP++V LL NK++LV+E++ A P ++K +
Sbjct: 63 HPNIVKLLDVI--------HTENKLYLVFEFLSMDLKDFMDASALTGIPLPLIK-----S 109
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
L + + + F HS + L N+L++ KL+D+G++
Sbjct: 110 YLFQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 152
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 22/166 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQ 494
+ NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIP---NGSYRAHLSENCPENVLKWSDRLA 551
HP++V LL NK++LV+E++ A P ++K +
Sbjct: 64 HPNIVKLLDVI--------HTENKLYLVFEFLSMDLKDFMDASALTGIPLPLIK-----S 110
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
L + + + F HS + L N+L++ KL+D+G++
Sbjct: 111 YLFQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 153
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Query: 169 TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSG 228
T+L L N L +++ LT + + EL+ KL L L LDL N+L S
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELT-KLQVDGTLPVLGTLDLSHNQLQS- 91
Query: 229 LPLMPKGL--VTVL-LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNIS 285
LPL+ + L +TVL +S N + L +LQ L L N+L +PP +L P +
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 286 YLHLASNMLSGTLPKDLSCG-SKLDSI 311
L LA+N L+ LP L G LD++
Sbjct: 152 KLSLANNDLT-ELPAGLLNGLENLDTL 177
>pdb|1RJB|A Chain A, Crystal Structure Of Flt3
Length = 344
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 44/172 (25%)
Query: 459 GRLENGTYVAIRSLTFLKKYSIQNLKVRLD------FLSKLQ-------HPHLVSLLGHC 505
G++ N T I + +++ LK + D +S+L+ H ++V+LLG C
Sbjct: 59 GKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGAC 118
Query: 506 IESGSQDDSNTNKVFLVYEYIPNG-------SYRAHLSENCPE-------------NVLK 545
SG ++L++EY G S R SE+ E NVL
Sbjct: 119 TLSGP--------IYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLT 170
Query: 546 WSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ D L VAK + FL L N+L+ ++ K+ D+G++
Sbjct: 171 FEDLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLA 219
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Query: 169 TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSG 228
T+L L N L +++ LT + + EL+ KL L L LDL N+L S
Sbjct: 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELT-KLQVDGTLPVLGTLDLSHNQLQS- 91
Query: 229 LPLMPKGL--VTVL-LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNIS 285
LPL+ + L +TVL +S N + L +LQ L L N+L +PP +L P +
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 286 YLHLASNMLSGTLPKDLSCG-SKLDSI 311
L LA+N L+ LP L G LD++
Sbjct: 152 KLSLANNNLT-ELPAGLLNGLENLDTL 177
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Query: 169 TVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSG 228
T+L L N L +++ LT + + EL+ KL L L LDL N+L S
Sbjct: 35 TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELT-KLQVDGTLPVLGTLDLSHNQLQS- 92
Query: 229 LPLMPKGL--VTVL-LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNIS 285
LPL+ + L +TVL +S N + L +LQ L L N+L +PP +L P +
Sbjct: 93 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 152
Query: 286 YLHLASNMLSGTLPKDLSCG-SKLDSI 311
L LA+N L+ LP L G LD++
Sbjct: 153 KLSLANNNLT-ELPAGLLNGLENLDTL 178
>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome.
pdb|2PWL|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/173 (19%), Positives = 76/173 (43%), Gaps = 34/173 (19%)
Query: 448 MGEGSRGKLY--------KGRLENGTYVAIRSLTF-LKKYSIQNLKVRLDFLSKL-QHPH 497
+GEG+ G++ K + + VA++ L + + +L ++ + + +H +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------------ENCPENVL 544
++ LLG C + G ++++ EY G+ R +L PE +
Sbjct: 103 IIHLLGACTQDGP--------LYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 154
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ D ++ +A+ + +L S L N+L+ E+ + K++D+G++
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLA 204
>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
Domain Of Csf-1r
Length = 324
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 121/321 (37%), Gaps = 59/321 (18%)
Query: 431 YLEELKEATNNFDSLSFMGEGSRGKLYK------GRLENGTYVAIRSL-TFLKKYSIQNL 483
Y E+ + NN +G G+ GK+ + G+ + VA++ L + + L
Sbjct: 22 YNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEAL 81
Query: 484 KVRLDFLSKL-QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC--- 539
L +S L QH ++V+LLG C G V ++ EY G L
Sbjct: 82 MSELKIMSHLGQHENIVNLLGACTHGGP--------VLVITEYCCYGDLLNFLRRKAEAM 133
Query: 540 ----------PENV-------LKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNIL 582
PE + L+ D L VA+ + FL S + N+L
Sbjct: 134 LGPSLAPGQDPEGLDKEDGRPLELRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVL 190
Query: 583 LDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLE 642
L +AK+ D+G++ + KG AR ++ S + V V +
Sbjct: 191 LTNGHVAKIGDFGLARDIMNDSNYIVKG---NARLPVKWMAPESIFDCVYTV-------Q 240
Query: 643 DDVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIV 702
DV+++G +L E + + L+N +DG ++ P + +
Sbjct: 241 SDVWSYGILLWE--IFSLGLNPYPGILVNSKFYKLVKDG-YQMAQPAF-------APKNI 290
Query: 703 VSITNKCICPEPSSRPSFEDV 723
SI C EP+ RP+F+ +
Sbjct: 291 YSIMQACWALEPTHRPTFQQI 311
>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From
Par-3
Length = 396
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 43/189 (22%)
Query: 432 LEELKEATN--------------NFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKK 477
+EE KEA N +FD L +G GS K+ RL+ I ++ +KK
Sbjct: 30 IEEEKEAMNTRESGKASSSLGLQDFDLLRVIGRGSYAKVLLVRLKKTD--RIYAMRVVKK 87
Query: 478 YSIQNLKVRLDFLSKLQH--------PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG 529
+ N +D++ +H P LV L C ++ S ++F V EY+ G
Sbjct: 88 -ELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHS-CFQTES-------RLFFVIEYVNGG 138
Query: 530 SYRAHLSEN--CPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR 587
H+ PE ++ ++ A+++LH G L +N+LLD
Sbjct: 139 DLMFHMQRQRKLPEEHARFYS-----AEISLALNYLHER---GIIYRDLKLDNVLLDSEG 190
Query: 588 IAKLSDYGI 596
KL+DYG+
Sbjct: 191 HIKLTDYGM 199
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 95/236 (40%), Gaps = 37/236 (15%)
Query: 490 LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDR 549
+ KL HP LV G C S +++V EYI NG +L + L+ S
Sbjct: 57 MMKLSHPKLVKFYGVC--------SKEYPIYIVTEYISNGCLLNYLRSH--GKGLEPSQL 106
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEA 608
L + V + + FL S F +R L N L+D K+SD+G++ + + + + +
Sbjct: 107 LEMCYDVCEGMAFLESH----QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSS 162
Query: 609 KGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAF 668
G F + SA V + + DV+ FG ++ E V + + +
Sbjct: 163 VGTK--------FPVKWSAPEVFHYF---KYSSKSDVWAFGILMWE--VFSLGKMPYDLY 209
Query: 669 LLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
+E+ SQ R+ P + + + I C P RP+F+ +L
Sbjct: 210 TNSEVVLKVSQG--HRLYRPHLAS-------DTIYQIMYSCWHELPEKRPTFQQLL 256
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 22/166 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQ 494
+ NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG---SYRAHLSENCPENVLKWSDRLA 551
HP++V LL NK++LV+E++ A P ++K +
Sbjct: 64 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKTFMDASALTGIPLPLIK-----S 110
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
L + + + F HS + L N+L++ KL+D+G++
Sbjct: 111 YLFQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 153
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 19/159 (11%)
Query: 442 FDSLSFMGEGSRGKLYKGRLENGT--YVAIRSLTFLKKYSIQNL-KVRLDFLSKLQHPHL 498
F L +G+GS G+++KG ++N T VAI+ + + + + LS+ P++
Sbjct: 24 FTKLEKIGKGSFGEVFKG-IDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYV 82
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
G ++ K++++ EY+ GS L E P L + IL + K
Sbjct: 83 TKYYGSYLKD--------TKLWIIMEYLGGGS-ALDLLEPGP---LDETQIATILREILK 130
Query: 559 AVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ +LHS + N+LL EH KL+D+G++
Sbjct: 131 GLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVA 166
>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZR|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 448 MGEGSRGKLY--------KGRLENGTYVAIRSLTF-LKKYSIQNLKVRLDFLSKL-QHPH 497
+GEG+ G++ K + + VA++ L + + +L ++ + + +H +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------------ENCPENVL 544
+++LLG C + G ++++ EY G+ R +L PE +
Sbjct: 103 IINLLGACTQDGP--------LYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 154
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ D ++ +A+ + +L S L N+L+ E+ + +++D+G++
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMRIADFGLA 204
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 17/160 (10%)
Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL--TFLKKYSIQNLKVRLDFLSKLQHPH 497
N+ L +G+G+ K+ R + G VA++ + T L S+Q L + + L HP+
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPN 74
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
+V L IE+ ++LV EY G +L +K + A +
Sbjct: 75 IVKLF-EVIET-------EKTLYLVMEYASGGEVFDYL---VAHGRMKEKEARAKFRQIV 123
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
AV + H I L N+LLD K++D+G S
Sbjct: 124 SAVQYCHQKFI---VHRDLKAENLLLDADMNIKIADFGFS 160
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 22/166 (13%)
Query: 438 ATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQ 494
+ NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPN---GSYRAHLSENCPENVLKWSDRLA 551
HP++V LL NK++LV+E++ A P ++K +
Sbjct: 61 HPNIVKLLDVI--------HTENKLYLVFEFLHQDLKDFMDASALTGIPLPLIK-----S 107
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
L + + + F HS + L N+L++ KL+D+G++
Sbjct: 108 YLFQLLQGLAFCHSHRV---LHRDLKPENLLINTEGAIKLADFGLA 150
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 19/147 (12%)
Query: 166 SNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD--MSALTSLHVLDLREN 223
+N +L L NQ+ P + L ++ + +N+L G LP +LT L VLDL N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98
Query: 224 KLDSGLPLMPKGLVTVLLS-RNLFSGA-----IPQQFGELAQLQHLDLSFNDLSGIPPSV 277
+L ++P + L+ + LF +P+ L L HL L N L IP
Sbjct: 99 QLT----VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGA 154
Query: 278 LFSLPNISYLHLASNMLSGTLPKDLSC 304
L ++++ +L N P D C
Sbjct: 155 FDRLSSLTHAYLFGN------PWDCEC 175
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 117 LSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS 175
L+ L +LD+ +N L +PS + RLV L+ L M N + +P + L++LT L+L
Sbjct: 87 LTQLTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQ 144
Query: 176 NQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSAL 212
NQLK + R+++LT + N + D+ L
Sbjct: 145 NQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYL 181
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Query: 121 ELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKG 180
++L + N + P L+ L+ L + +N +DSL+ LTVL L +NQL
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT- 101
Query: 181 QFPSSIC-RIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDS 227
PS++ R+ L ++ M N+L+ + LT L L L +N+L S
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS 149
>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
Length = 284
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/167 (18%), Positives = 74/167 (44%), Gaps = 18/167 (10%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTF---LKKYSIQN-LKVRLDFLS 491
K ++FD + +G+G G +Y R + ++ + F L+K +++ L+ ++ S
Sbjct: 10 KFTIDDFDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQS 69
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLA 551
L+HP+++ + + + +++L+ E+ P G L ++
Sbjct: 70 HLRHPNILRMYNYF--------HDRKRIYLMLEFAPRGELYKELQKH---GRFDEQRSAT 118
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISI 598
+ +A A+H+ H + + N+L+ K++D+G S+
Sbjct: 119 FMEELADALHYCHERKV---IHRDIKPENLLMGYKGELKIADFGWSV 162
>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
Length = 327
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 17/160 (10%)
Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL--TFLKKYSIQNLKVRLDFLSKLQHPH 497
N+ L +G+G+ K+ R + G VA++ + T L S+Q L + + L HP+
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPN 74
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
+V L IE+ ++LV EY G +L +K + A +
Sbjct: 75 IVKLF-EVIET-------EKTLYLVMEYASGGEVFDYL---VAHGRMKEKEARAKFRQIV 123
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
AV + H I L N+LLD K++D+G S
Sbjct: 124 SAVQYCHQKFI---VHRDLKAENLLLDADMNIKIADFGFS 160
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 19/159 (11%)
Query: 442 FDSLSFMGEGSRGKLYKGRLENGT--YVAIRSLTFLKKYSIQNL-KVRLDFLSKLQHPHL 498
F L +G+GS G+++KG ++N T VAI+ + + + + LS+ P++
Sbjct: 9 FTKLEKIGKGSFGEVFKG-IDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYV 67
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
G ++ K++++ EY+ GS L E P L + IL + K
Sbjct: 68 TKYYGSYLKD--------TKLWIIMEYLGGGS-ALDLLEPGP---LDETQIATILREILK 115
Query: 559 AVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ +LHS + N+LL EH KL+D+G++
Sbjct: 116 GLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVA 151
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 19/159 (11%)
Query: 442 FDSLSFMGEGSRGKLYKGRLENGT--YVAIRSLTFLKKYSIQNL-KVRLDFLSKLQHPHL 498
F L +G+GS G+++KG ++N T VAI+ + + + + LS+ P++
Sbjct: 9 FTKLEKIGKGSFGEVFKG-IDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYV 67
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
G ++ K++++ EY+ GS L E P L + IL + K
Sbjct: 68 TKYYGSYLKD--------TKLWIIMEYLGGGS-ALDLLEPGP---LDETQIATILREILK 115
Query: 559 AVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ +LHS + N+LL EH KL+D+G++
Sbjct: 116 GLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVA 151
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 17/160 (10%)
Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL--TFLKKYSIQNLKVRLDFLSKLQHPH 497
N+ L +G+G+ K+ R + G VA++ + T L S+Q L + + L HP+
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPN 74
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
+V L IE+ ++LV EY G +L +K + A +
Sbjct: 75 IVKLF-EVIET-------EKTLYLVMEYASGGEVFDYL---VAHGRMKEKEARAKFRQIV 123
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
AV + H I L N+LLD K++D+G S
Sbjct: 124 SAVQYCHQKFI---VHRDLKAENLLLDADMNIKIADFGFS 160
>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain
Length = 332
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 70/351 (19%), Positives = 127/351 (36%), Gaps = 96/351 (27%)
Query: 441 NFDSLSFMGEGSRGKLY--KGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHL 498
+F+ + MG G G ++ K ++++ Y R ++ + + + + L+KL+HP +
Sbjct: 7 DFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGI 66
Query: 499 VSLLGHCIESGSQD-DSNTNKVFLVYEYI------------PNGSYR-----------AH 534
V +E+ + ++++L E P+ R
Sbjct: 67 VRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQ 126
Query: 535 LSENCP-------------ENVLKWSDR------------LAILIGVAKAVHFLHSSVIS 569
L + P EN+ W +R L I I +A+AV FLHS
Sbjct: 127 LQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSK--- 183
Query: 570 GSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAEN 629
G L +NI + K+ D+G+ M++ E+ E P Y T
Sbjct: 184 GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEE-EQTVLTPMPAYA------THXGQ 236
Query: 630 VVIVVDIQRTKLED-------DVYNFGFILLESLVGPIVTGKGEAFLLNEMASFGSQDGR 682
V + + ++ D+++ G IL E L SF +Q R
Sbjct: 237 VGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLY-----------------SFSTQMER 279
Query: 683 RRIVD-------PVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVLWN 726
RI+ P++ T + +V + + P P+ RP D++ N
Sbjct: 280 VRIITDVRNLKFPLLFTQKYPQEHMMVQDM----LSPSPTERPEATDIIEN 326
>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632
pdb|2GNL|A Chain A, Pka Threefold Mutant Model Of Rho-Kinase With Inhibitor H-
1152p
Length = 350
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 29/180 (16%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK-LYKGRLENGTYVAIRSLTFLKKYSIQN 482
+PA T +L++ F+ + +G GS G+ + +E G + A++ L K ++
Sbjct: 32 NPAQNTAHLDQ-------FERIKTIGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQ 84
Query: 483 LKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
++ L+ L + P LV L E +D+SN +++V EY+P G +HL
Sbjct: 85 IEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYVPGGEMFSHL---- 132
Query: 540 PENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ ++S+ A + +LHS + L N+L+D+ K++D+G +
Sbjct: 133 -RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLLIDQQGYIKVADFGFA 188
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 22/164 (13%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQHP 496
NF + +GEG+ G +YK R + G VA++ + + + + +R + L +L HP
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNG---SYRAHLSENCPENVLKWSDRLAIL 553
++V LL NK++LV+E++ A P ++K + L
Sbjct: 62 NIVKLLDVI--------HTENKLYLVFEHVHQDLKTFMDASALTGIPLPLIK-----SYL 108
Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ + + F HS + L N+L++ KL+D+G++
Sbjct: 109 FQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 149
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 32/181 (17%)
Query: 437 EATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSK 492
E +F + +G+GS +Y+ + G VAI+ + K +Q ++ + +
Sbjct: 8 EKIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQ 67
Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAI 552
L+HP ++ L + ++N V+LV E NG +L V +S+
Sbjct: 68 LKHPSILELYNYF--------EDSNYVYLVLEMCHNGEMNRYLKNR----VKPFSEN--- 112
Query: 553 LIGVAKAVHFLHSSVIS-------GSFSNRLTTNNILLDEHRIAKLSDYGISIIME-EHE 604
+A HF+H + G LT +N+LL + K++D+G++ ++ HE
Sbjct: 113 -----EARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHE 167
Query: 605 K 605
K
Sbjct: 168 K 168
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 78/166 (46%), Gaps = 14/166 (8%)
Query: 439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPH 497
++F+ ++ +G+G+ G++ K R + Y AI+ + ++ + + + L+ L H +
Sbjct: 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEE-KLSTILSEVMLLASLNHQY 63
Query: 498 LVSLLGHCIESGSQDDSNT-----NKVFLVYEYIPNGS-YRAHLSENCPENVLKWSDRLA 551
+V +E + T + +F+ EY NG+ Y SEN + + +
Sbjct: 64 VVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQ---QRDEYWR 120
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ + +A+ ++HS G L NI +DE R K+ D+G++
Sbjct: 121 LFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNVKIGDFGLA 163
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 22/164 (13%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQHP 496
NF + +GEG+ G +YK R + G VA+ + + + + +R + L +L HP
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLAIL 553
++V LL NK++LV+E++ + A P ++K + L
Sbjct: 63 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----SYL 109
Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ + + F HS + L N+L++ KL+D+G++
Sbjct: 110 FQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 150
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 22/164 (13%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTF-LKKYSIQNLKVR-LDFLSKLQHP 496
NF + +GEG+ G +YK R + G VA+ + + + + +R + L +L HP
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYR---AHLSENCPENVLKWSDRLAIL 553
++V LL NK++LV+E++ + A P ++K + L
Sbjct: 62 NIVKLLDVI--------HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIK-----SYL 108
Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ + + F HS + L N+L++ KL+D+G++
Sbjct: 109 FQLLQGLAFCHSHRV---LHRDLKPQNLLINTEGAIKLADFGLA 149
>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
Length = 319
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 17/160 (10%)
Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL--TFLKKYSIQNLKVRLDFLSKLQHPH 497
N+ L +G+G+ K+ R + G VA++ + T L S+Q L + + L HP+
Sbjct: 8 NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPN 67
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
+V L IE+ ++LV EY G +L +K + A +
Sbjct: 68 IVKLF-EVIET-------EKTLYLVMEYASGGEVFDYL---VAHGWMKEKEARAKFRQIV 116
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
AV + H I L N+LLD K++D+G S
Sbjct: 117 SAVQYCHQKFI---VHRDLKAENLLLDADMNIKIADFGFS 153
>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp
Length = 298
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 118/280 (42%), Gaps = 40/280 (14%)
Query: 448 MGEGSRGKLYKG----RLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSK-LQHPHLVSLL 502
+G+G G +Y G + +N AI+SL+ + + +R L + L HP++++L+
Sbjct: 29 IGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALI 88
Query: 503 GHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHF 562
G + V L Y+ +G + P+ D ++ + VA+ + +
Sbjct: 89 GIMLPP-----EGLPHVLL--PYMCHGDLLQFI--RSPQRNPTVKDLISFGLQVARGMEY 139
Query: 563 LHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLF 621
L F +R L N +LDE K++D+G++ + + E + + R+ L
Sbjct: 140 LAEQ----KFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQ----QHRHARLP 191
Query: 622 ICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV-GPIVTGKGEAFLLNEMASFGSQD 680
+ T+ E+ + R + DV++FG +L E L G + F L + G
Sbjct: 192 VKWTALES----LQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQG--- 244
Query: 681 GRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
RR+ P C + + +C +P+ RP+F
Sbjct: 245 --RRLPQP---EYCPDS----LYQVMQQCWEADPAVRPTF 275
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 80/200 (40%), Gaps = 30/200 (15%)
Query: 122 LLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQ 181
LLD+ +N + L L TL + N P + L L L L NQLK +
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 114
Query: 182 FPSSICRIATLTDIAMSNNELSG-KLPDMSALTSLHVLDLRENKL--------------- 225
P + + TL ++ + NE++ + + L + V++L N L
Sbjct: 115 LPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 226 -------DSGLPLMPKGLVTVLLSRNLFSGAIPQ----QFGELAQLQHLDLSFNDLSGIP 274
D+ + +P+GL L +L I + L L L LSFN +S +
Sbjct: 173 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232
Query: 275 PSVLFSLPNISYLHLASNML 294
L + P++ LHL +N L
Sbjct: 233 NGSLANTPHLRELHLNNNKL 252
>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With
Y- 27632
Length = 350
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 29/180 (16%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK-LYKGRLENGTYVAIRSLTFLKKYSIQN 482
+PA T +L++ F+ + +G GS G+ + +E G + A++ L K ++
Sbjct: 32 NPAQNTAHLDQ-------FERIKTIGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQ 84
Query: 483 LKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
++ L+ L + P LV L E +D+SN +++V EY+P G +HL
Sbjct: 85 IEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYMPGGDMFSHL---- 132
Query: 540 PENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ ++S+ A + +LHS + L N+L+D+ K++D+G +
Sbjct: 133 -RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLLIDQQGYIKVADFGFA 188
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 80/200 (40%), Gaps = 30/200 (15%)
Query: 122 LLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQ 181
LLD+ +N + L L TL + N P + L L L L NQLK +
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 114
Query: 182 FPSSICRIATLTDIAMSNNELSG-KLPDMSALTSLHVLDLRENKL--------------- 225
P + + TL ++ + NE++ + + L + V++L N L
Sbjct: 115 LPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 226 -------DSGLPLMPKGLVTVLLSRNLFSGAIPQ----QFGELAQLQHLDLSFNDLSGIP 274
D+ + +P+GL L +L I + L L L LSFN +S +
Sbjct: 173 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232
Query: 275 PSVLFSLPNISYLHLASNML 294
L + P++ LHL +N L
Sbjct: 233 NGSLANTPHLRELHLNNNKL 252
>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8W|B Chain B, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|B Chain B, Crystal Structure Of Pkciota Kinase Domain
Length = 345
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 29/167 (17%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQH---- 495
+FD L +G GS K+ RL+ I ++ +KK + N +D++ +H
Sbjct: 9 QDFDLLRVIGRGSYAKVLLVRLKKTD--RIYAMKVVKK-ELVNDDEDIDWVQTEKHVFEQ 65
Query: 496 ----PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN--CPENVLKWSDR 549
P LV L C ++ S ++F V EY+ G H+ PE ++
Sbjct: 66 ASNHPFLVGLHS-CFQTES-------RLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYS- 116
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
++ A+++LH G L +N+LLD KL+DYG+
Sbjct: 117 ----AEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGM 156
>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical
Protein Kinase C-Iota
Length = 364
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 29/167 (17%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQH---- 495
+FD L +G GS K+ RL+ I ++ +KK + N +D++ +H
Sbjct: 20 QDFDLLRVIGRGSYAKVLLVRLKKTD--RIYAMKVVKK-ELVNDDEDIDWVQTEKHVFEQ 76
Query: 496 ----PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN--CPENVLKWSDR 549
P LV L C ++ S ++F V EY+ G H+ PE ++
Sbjct: 77 ASNHPFLVGL-HSCFQTES-------RLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYS- 127
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
++ A+++LH G L +N+LLD KL+DYG+
Sbjct: 128 ----AEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGM 167
>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase
pdb|2GNH|A Chain A, Pka Five Fold Mutant Model Of Rho-Kinase With H1152p
pdb|2GNI|A Chain A, Pka Fivefold Mutant Model Of Rho-Kinase With Inhibitor
Fasudil (Ha1077)
Length = 350
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 29/180 (16%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK-LYKGRLENGTYVAIRSLTFLKKYSIQN 482
+PA T +L++ F+ + +G GS G+ + +E G + A++ L K ++
Sbjct: 32 NPAQNTAHLDQ-------FERIKTIGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQ 84
Query: 483 LKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
++ L+ L + P LV L E +D+SN +++V EY+P G +HL
Sbjct: 85 IEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYMPGGDMFSHL---- 132
Query: 540 PENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ ++S+ A + +LHS + L N+L+D+ K++D+G +
Sbjct: 133 -RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLLIDQQGYIKVADFGFA 188
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 8/109 (7%)
Query: 117 LSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS 175
L+ L+ L + N L ++PSG+ RL +L+ L ++TN +D L+NL LSL +
Sbjct: 106 LTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164
Query: 176 NQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLD-LREN 223
NQL+ + R+ L I + N+ D S +L++ +REN
Sbjct: 165 NQLQSVPHGAFDRLGKLQTITLFGNQF-----DCSRCETLYLSQWIREN 208
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 63/176 (35%), Gaps = 24/176 (13%)
Query: 121 ELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKG 180
E LD+ S L + L +L L +D N +D L+ L L L +NQL
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 181 QFPSSICRIATLTDIAMSNNELSGKLPD--MSALTSLHVLDLRENKLDSGLPLMPKGLVT 238
+ L + + N+L LP LT L L L N+L S +P G
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQS----IPAG--- 149
Query: 239 VLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNML 294
F +L LQ L LS N L +P L + + L N
Sbjct: 150 --------------AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 116 RLSSLELLDMSSNFLFGAIPSG-ISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLK 174
RL+ L+ L +++N L +IP+G +L LQTL++ TN +D L L ++L
Sbjct: 129 RLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187
Query: 175 SNQLKGQFPSSICRIATLTDIAMSN 199
N QF S C L+ N
Sbjct: 188 GN----QFDCSRCETLYLSQWIREN 208
>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|B Chain B, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|C Chain C, A Novel Small Molecule Apkc Inhibitor
Length = 349
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 29/167 (17%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQH---- 495
+FD L +G GS K+ RL+ I ++ +KK + N +D++ +H
Sbjct: 5 QDFDLLRVIGRGSYAKVLLVRLKKTD--RIYAMKVVKK-ELVNDDEDIDWVQTEKHVFEQ 61
Query: 496 ----PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN--CPENVLKWSDR 549
P LV L C ++ S ++F V EY+ G H+ PE ++
Sbjct: 62 ASNHPFLVGLHS-CFQTES-------RLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYS- 112
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
++ A+++LH G L +N+LLD KL+DYG+
Sbjct: 113 ----AEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGM 152
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 11/121 (9%)
Query: 110 LPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDS----- 164
LPD + + LE L ++ N L A+P+ I+ L RL+ L++ +P+ S
Sbjct: 119 LPDTXQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 165 ----LSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDL 220
L NL L L+ ++ P+SI + L + + N+ LS P + L L LDL
Sbjct: 178 EHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236
Query: 221 R 221
R
Sbjct: 237 R 237
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 117 LSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS 175
L+ L+ L + N L ++PSG+ RL +L+ L ++TN +D L+NL LSL +
Sbjct: 106 LTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164
Query: 176 NQLKGQFPSSICRIATLTDIAMSNNEL 202
NQL+ + R+ L I + N+
Sbjct: 165 NQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 63/176 (35%), Gaps = 24/176 (13%)
Query: 121 ELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKG 180
E LD+ S L + L +L L +D N +D L+ L L L +NQL
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 181 QFPSSICRIATLTDIAMSNNELSGKLPD--MSALTSLHVLDLRENKLDSGLPLMPKGLVT 238
+ L + + N+L LP LT L L L N+L S +P G
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQS----IPAG--- 149
Query: 239 VLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNML 294
F +L LQ L LS N L +P L + + L N
Sbjct: 150 --------------AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 116 RLSSLELLDMSSNFLFGAIPSG-ISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLK 174
RL+ L+ L +++N L +IP+G +L LQTL++ TN +D L L ++L
Sbjct: 129 RLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187
Query: 175 SNQLKGQFPSSICRIATLTDIAMSN 199
N QF S C I L+ N
Sbjct: 188 GN----QFDCSRCEILYLSQWIREN 208
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 91/236 (38%), Gaps = 40/236 (16%)
Query: 112 DKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVL 171
D L LE+L +S N + + L L TL + N ++ LS L L
Sbjct: 53 DTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLREL 112
Query: 172 SLKSNQLKGQFPSSICRIATLTDIAM---------SNNELSG---------------KLP 207
L++N ++ + R+ +L + + S G +P
Sbjct: 113 WLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP 172
Query: 208 DMSALTSLHVLDLRENKLDSGLPLMPKGLVTV---LLSRNLFSGAIPQQFGELAQLQHLD 264
+++AL L L+L N+LD P +GL ++ L + F +L L+ L+
Sbjct: 173 NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELN 232
Query: 265 LSFNDLSGIPPSVLFSLPNISYLHLASN-------------MLSGTLPKDLSCGSK 307
LS N+L +P + L + +HL N L T+P + +C ++
Sbjct: 233 LSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCAR 288
>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2F2U|B Chain B, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2H9V|A Chain A, Structural Basis For Induced-Fit Binding Of Rho-Kinase To
The Inhibitor Y27632
Length = 402
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 21/173 (12%)
Query: 435 LKEATNNFDSLSFMGEGSRG--KLYKGRLENGTYVA--IRSLTFLKKYSIQNLKVRLDFL 490
L+ ++D + +G G+ G +L + + Y + +K+ D +
Sbjct: 70 LQMKAEDYDVVKVIGRGAFGEVQLVRHKASQKVYAMKLLSKFEMIKRSDSAFFWEERDIM 129
Query: 491 SKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE-NCPENVLKWSDR 549
+ P +V L QDD +++V EY+P G +S + PE K+
Sbjct: 130 AFANSPWVVQLF-----CAFQDDK---YLYMVMEYMPGGDLVNLMSNYDVPEKWAKFYTA 181
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE 602
+L A+ +HS G + +N+LLD+H KL+D+G + M+E
Sbjct: 182 EVVL-----ALDAIHSM---GLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDE 226
>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In
Complex With Staurosporine
pdb|1Q8T|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase
(Pka) In Complex With Rho-Kinase Inhibitor Y-27632
pdb|1Q8U|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor H-1152p
pdb|1SVE|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 1
pdb|1SVG|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 4
pdb|1VEB|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 5
pdb|3E8C|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|C Chain C, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|D Chain D, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|F Chain F, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8E|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|I Chain I, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|L Chain L, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|P Chain P, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
Length = 350
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 83/180 (46%), Gaps = 29/180 (16%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK-LYKGRLENGTYVAIRSLTFLKKYSIQN 482
+PA T +L++ F+ + +G GS G+ + +E G + A++ L K ++
Sbjct: 32 NPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQ 84
Query: 483 LKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
++ L+ L + P LV L E +D+SN +++V EY+P G +HL
Sbjct: 85 IEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYVPGGEMFSHL---- 132
Query: 540 PENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ ++S+ A + +LHS + L N+L+D+ +++D+G +
Sbjct: 133 -RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLLIDQQGYIQVTDFGFA 188
>pdb|2F7E|E Chain E, Pka Complexed With
(S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6-
Yl-Pyridin-3-Yloxymethyl-Etylamine
pdb|2F7X|E Chain E, Protein Kinase A Bound To
(s)-2-(1h-indol-3-yl)-1-[5-((e)-2-
Pyridin-4-yl-vinyl)-pyridin-3-yloxymethyl]-ethylamine
pdb|2F7Z|E Chain E, Protein Kinase A Bound To
(R)-1-(1h-Indol-3-Ylmethyl)-2-(2-
Pyridin-4-Yl-[1,7]naphtyridin-5-Yloxy)-Ehylamine
pdb|2OH0|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
pdb|2OJF|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
Length = 351
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 83/180 (46%), Gaps = 29/180 (16%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK-LYKGRLENGTYVAIRSLTFLKKYSIQN 482
+PA T +L++ F+ + +G GS G+ + +E G + A++ L K ++
Sbjct: 33 NPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQ 85
Query: 483 LKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
++ L+ L + P LV L E +D+SN +++V EY+P G +HL
Sbjct: 86 IEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYVPGGEMFSHL---- 133
Query: 540 PENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ ++S+ A + +LHS + L N+L+D+ +++D+G +
Sbjct: 134 -RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLLIDQQGYIQVTDFGFA 189
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 91/236 (38%), Gaps = 40/236 (16%)
Query: 112 DKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVL 171
D L LE+L +S N + + L L TL + N ++ LS L L
Sbjct: 53 DTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLREL 112
Query: 172 SLKSNQLKGQFPSSICRIATLTDIAM---------SNNELSG---------------KLP 207
L++N ++ + R+ +L + + S G +P
Sbjct: 113 WLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP 172
Query: 208 DMSALTSLHVLDLRENKLDSGLPLMPKGLVTV---LLSRNLFSGAIPQQFGELAQLQHLD 264
+++AL L L+L N+LD P +GL ++ L + F +L L+ L+
Sbjct: 173 NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELN 232
Query: 265 LSFNDLSGIPPSVLFSLPNISYLHLASN-------------MLSGTLPKDLSCGSK 307
LS N+L +P + L + +HL N L T+P + +C ++
Sbjct: 233 LSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCAR 288
>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 8
pdb|1XH5|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH6|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH8|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|2GFC|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 83/180 (46%), Gaps = 29/180 (16%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK-LYKGRLENGTYVAIRSLTFLKKYSIQN 482
+PA T +L++ F+ + +G GS G+ + +E G + A++ L K ++
Sbjct: 32 NPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQ 84
Query: 483 LKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
++ L+ L + P LV L E +D+SN +++V EY+P G +HL
Sbjct: 85 IEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYVPGGEMFSHL---- 132
Query: 540 PENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ ++S+ A + +LHS + L N+L+D+ +++D+G +
Sbjct: 133 -RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLLIDQQGYIQVTDFGFA 188
>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
pdb|3DNE|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 83/180 (46%), Gaps = 29/180 (16%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK-LYKGRLENGTYVAIRSLTFLKKYSIQN 482
+PA T +L++ F+ + +G GS G+ + +E G + A++ L K ++
Sbjct: 32 NPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQ 84
Query: 483 LKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
++ L+ L + P LV L E +D+SN +++V EY+P G +HL
Sbjct: 85 IEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYVPGGEMFSHL---- 132
Query: 540 PENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ ++S+ A + +LHS + L N+L+D+ +++D+G +
Sbjct: 133 -RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLLIDQQGYIQVTDFGFA 188
>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase
Domain From Human
Length = 314
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 29/221 (13%)
Query: 445 LSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGH 504
L G G ++K +L N +VA++ K S Q+ + + ++H +L+ +
Sbjct: 20 LEIKARGRFGCVWKAQLMN-DFVAVKIFPLQDKQSWQSER-EIFSTPGMKHENLLQFI-- 75
Query: 505 CIESGSQDDSNTN-KVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFL 563
+ + SN +++L+ + GS L++ N++ W++ + +++ + +L
Sbjct: 76 ---AAEKRGSNLEVELWLITAFHDKGS----LTDYLKGNIITWNELCHVAETMSRGLSYL 128
Query: 564 HSSVI-------SGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKA 615
H V S ++R + N+LL A L+D+G+++ E G+ P
Sbjct: 129 HEDVPWCRGEGHKPSIAHRDFKSKNVLLKSDLTAVLADFGLAVRFE-------PGKPPGD 181
Query: 616 RYGFLFICRTSAENVVI-VVDIQRTK-LEDDVYNFGFILLE 654
+G + R A V+ ++ QR L D+Y G +L E
Sbjct: 182 THGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWE 222
>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl)amide
pdb|2C1B|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
(4r,2s)-5'-(4-(4-Chlorobenzyloxy)pyrrolidin-2-
Ylmethanesulfonyl)isoquinoline
pdb|2VO7|A Chain A, Structure Of Pka Complexed With 4-(4-Chlorobenzyl)-1-(7h-
Pyrrolo(2,3-D)pyrimidin-4-Yl)piperidin-4-Ylamine
pdb|3AG9|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
pdb|3AG9|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
Length = 351
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 83/180 (46%), Gaps = 29/180 (16%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK-LYKGRLENGTYVAIRSLTFLKKYSIQN 482
+PA T +L++ F+ + +G GS G+ + +E G + A++ L K ++
Sbjct: 33 NPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQ 85
Query: 483 LKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
++ L+ L + P LV L E +D+SN +++V EY+P G +HL
Sbjct: 86 IEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYVPGGEMFSHL---- 133
Query: 540 PENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ ++S+ A + +LHS + L N+L+D+ +++D+G +
Sbjct: 134 -RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLLIDQQGYIQVTDFGFA 189
>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex
With A Staurosporine Analogue
Length = 290
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 64/312 (20%), Positives = 115/312 (36%), Gaps = 56/312 (17%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLE-----NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQ 494
+ +S +G+G+ G + R + G VA++ L ++ + + L L
Sbjct: 7 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALH 66
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
+V G G + + LV EY+P+G R L + L S L
Sbjct: 67 SDFIVKYRGVSYGPGRPE------LRLVMEYLPSGCLRDFLQRH--RARLDASRLLLYSS 118
Query: 555 GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGE 611
+ K + +L S L NIL++ K++D+G++ ++ ++ + G+
Sbjct: 119 QICKGMEYLGSRRC---VHRDLAARNILVESEAHVKIADFGLAKLLPLDKDXXVVREPGQ 175
Query: 612 GPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLN 671
P F + + ++N+ + DV++FG +L E + A L
Sbjct: 176 SPI----FWYAPESLSDNIF--------SRQSDVWSFGVVLYELFTYCDKSCSPSAEFLR 223
Query: 672 EMAS-----------FGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
M ++G+R P C E V + C P P RPSF
Sbjct: 224 MMGCERDVPALCRLLELLEEGQRLPAPP----ACPAE----VHELMKLCWAPSPQDRPSF 275
Query: 721 E------DVLWN 726
D+LW+
Sbjct: 276 SALGPQLDMLWS 287
>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|B Chain B, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|E Chain E, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
Length = 371
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 31/181 (17%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK--LYKGRLENGTYVAIRSLTFLKKYSIQ 481
SPA T +L++ F+ + +G GS G+ L K + E G + A++ L K ++
Sbjct: 53 SPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHK-ETGNHYAMKILDKQKVVKLK 104
Query: 482 NLKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN 538
++ L+ L + P LV L E +D+SN +++V EY+P G +HL
Sbjct: 105 QIEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYVPGGEMFSHL--- 153
Query: 539 CPENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
+ ++S+ A + +LHS + L N+L+D+ +++D+G
Sbjct: 154 --RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLLIDQQGYIQVTDFGF 208
Query: 597 S 597
+
Sbjct: 209 A 209
>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors
pdb|2UZU|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
pdb|2UZV|A Chain A, Pka Structures Of Indazole-pyridine Series Of Akt
Inhibitors
pdb|2UZW|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
Length = 336
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 83/180 (46%), Gaps = 29/180 (16%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK-LYKGRLENGTYVAIRSLTFLKKYSIQN 482
+PA T +L++ F+ + +G GS G+ + +E G + A++ L K ++
Sbjct: 18 NPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQ 70
Query: 483 LKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
++ L+ L + P LV L E +D+SN +++V EY+P G +HL
Sbjct: 71 IEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYVPGGEMFSHL---- 118
Query: 540 PENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ ++S+ A + +LHS + L N+L+D+ +++D+G +
Sbjct: 119 -RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLLIDQQGYIQVTDFGFA 174
>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-670
pdb|3L9L|A Chain A, Crystal Structure Of Pka With Compound 36
pdb|3L9L|B Chain B, Crystal Structure Of Pka With Compound 36
pdb|3OOG|A Chain A, Human Camp-Dependent Protein Kinase In Complex With A
Small Fragment
pdb|3OVV|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OWP|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OXT|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3P0M|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3POO|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
Length = 351
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 31/181 (17%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK--LYKGRLENGTYVAIRSLTFLKKYSIQ 481
SPA T +L++ F+ + +G GS G+ L K + E G + A++ L K ++
Sbjct: 33 SPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHK-ETGNHYAMKILDKQKVVKLK 84
Query: 482 NLKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN 538
++ L+ L + P LV L E +D+SN +++V EY+P G +HL
Sbjct: 85 QIEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYVPGGEMFSHL--- 133
Query: 539 CPENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
+ ++S+ A + +LHS + L N+L+D+ +++D+G
Sbjct: 134 --RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLLIDQQGYIQVTDFGF 188
Query: 597 S 597
+
Sbjct: 189 A 189
>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
pdb|2Q0B|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 76/173 (43%), Gaps = 34/173 (19%)
Query: 448 MGEGSRGKLY--------KGRLENGTYVAIRSLTF-LKKYSIQNLKVRLDFLSKL-QHPH 497
+GEG+ G++ K + + VA++ L + + +L ++ + + +H +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------------ENCPENVL 544
+++LLG C + G ++++ Y G+ R +L PE +
Sbjct: 103 IINLLGACTQDGP--------LYVIVAYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 154
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ D ++ +A+ + +L S L N+L+ E+ + K++D+G++
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLA 204
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 19/159 (11%)
Query: 442 FDSLSFMGEGSRGKLYKGRLENGT--YVAIRSLTF-LKKYSIQNLKVRLDFLSKLQHPHL 498
F L +G+GS G++YKG ++N T VAI+ + + I++++ + LS+ P++
Sbjct: 21 FTKLDRIGKGSFGEVYKG-IDNHTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYI 79
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
G ++S K++++ EY+ GS L E IL + K
Sbjct: 80 TRYFGSYLKS--------TKLWIIMEYLGGGSALDLLKPGPLEETYI----ATILREILK 127
Query: 559 AVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ +LHS + N+LL E KL+D+G++
Sbjct: 128 GLDYLHS---ERKIHRDIKAANVLLSEQGDVKLADFGVA 163
>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3PP0|B Chain B, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3RCD|A Chain A, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|B Chain B, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|C Chain C, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|D Chain D, Her2 Kinase Domain Complexed With Tak-285
Length = 338
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 105/233 (45%), Gaps = 40/233 (17%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKG-RLENGTYVAIR-SLTFLKK-YSIQNLKVRLD 488
L LKE + +G G+ G +YKG + +G V I ++ L++ S + K LD
Sbjct: 11 LRILKE--TELRKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILD 68
Query: 489 ---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN----CPE 541
++ + P++ LLG C+ T+ V LV + +P G H+ EN +
Sbjct: 69 EAYVMAGVGSPYVSRLLGICL---------TSTVQLVTQLMPYGCLLDHVRENRGRLGSQ 119
Query: 542 NVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIME 601
++L W ++A + + V +H L N+L+ K++D+G++ +++
Sbjct: 120 DLLNWCMQIAKGMSYLEDVRLVHRD---------LAARNVLVKSPNHVKITDFGLARLLD 170
Query: 602 EHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
E E +G K ++ + E+++ +R + DV+++G + E
Sbjct: 171 IDET-EYHADGGKVPIKWM-----ALESIL----RRRFTHQSDVWSYGVTVWE 213
>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol
Length = 351
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 31/181 (17%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK--LYKGRLENGTYVAIRSLTFLKKYSIQ 481
SPA T +L++ F+ + +G GS G+ L K + E G + A++ L K ++
Sbjct: 33 SPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHK-ETGNHYAMKILDKQKVVKLK 84
Query: 482 NLKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN 538
++ L+ L + P LV L E +D+SN +++V EY+P G +HL
Sbjct: 85 QIEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYVPGGEMFSHL--- 133
Query: 539 CPENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
+ ++S+ A + +LHS + L N+L+D+ +++D+G
Sbjct: 134 --RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLLIDQQGYIQVTDFGF 188
Query: 597 S 597
+
Sbjct: 189 A 189
>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
pdb|4AE6|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
Length = 343
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 31/181 (17%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK--LYKGRLENGTYVAIRSLTFLKKYSIQ 481
SPA T +L++ F+ + +G GS G+ L K + E G + A++ L K ++
Sbjct: 25 SPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHK-ETGNHYAMKILDKQKVVKLK 76
Query: 482 NLKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN 538
++ L+ L + P LV L E +D+SN +++V EY+P G +HL
Sbjct: 77 QIEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYVPGGEMFSHL--- 125
Query: 539 CPENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
+ ++S+ A + +LHS + L N+L+D+ +++D+G
Sbjct: 126 --RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLLIDQQGYIQVTDFGF 180
Query: 597 S 597
+
Sbjct: 181 A 181
>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
Length = 328
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 17/160 (10%)
Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL--TFLKKYSIQNLKVRLDFLSKLQHPH 497
N+ L +G+G+ K+ R + G VAI+ + T L S+Q L + + L HP+
Sbjct: 13 NYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPN 72
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
+V L IE+ ++L+ EY G +L +K + + +
Sbjct: 73 IVKLF-EVIET-------EKTLYLIMEYASGGEVFDYL---VAHGRMKEKEARSKFRQIV 121
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
AV + H I L N+LLD K++D+G S
Sbjct: 122 SAVQYCHQKRI---VHRDLKAENLLLDADMNIKIADFGFS 158
>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3AGL|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3VQH|A Chain A, Bromine Sad Partially Resolves Multiple Binding Modes For
Pka Inhibitor H-89
Length = 351
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 31/181 (17%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK--LYKGRLENGTYVAIRSLTFLKKYSIQ 481
SPA T +L++ F+ + +G GS G+ L K + E G + A++ L K ++
Sbjct: 33 SPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHK-ETGNHYAMKILDKQKVVKLK 84
Query: 482 NLKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN 538
++ L+ L + P LV L E +D+SN +++V EY+P G +HL
Sbjct: 85 QIEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYVPGGEMFSHL--- 133
Query: 539 CPENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
+ ++S+ A + +LHS + L N+L+D+ +++D+G
Sbjct: 134 --RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLLIDQQGYIQVTDFGF 188
Query: 597 S 597
+
Sbjct: 189 A 189
>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 83/180 (46%), Gaps = 29/180 (16%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK-LYKGRLENGTYVAIRSLTFLKKYSIQN 482
+PA T +L++ F+ + +G GS G+ + +E G + A++ L K ++
Sbjct: 32 NPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKE 84
Query: 483 LKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
++ L+ L + P LV L E +D+SN +++V EY P G +HL
Sbjct: 85 IEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYAPGGEMFSHL---- 132
Query: 540 PENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ ++S+ A + +LHS + L N+++D+ K++D+G++
Sbjct: 133 -RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLMIDQQGYIKVTDFGLA 188
>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|E Chain E, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|F Chain F, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
Length = 303
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Query: 439 TNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPH 497
++F+ ++ +G+G+ G++ K R + Y AI+ + ++ + + + L+ L H +
Sbjct: 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEE-KLSTILSEVXLLASLNHQY 63
Query: 498 LVSLLGHCIESGSQDDSNT-----NKVFLVYEYIPNGS-YRAHLSENCPENVLKWSDRLA 551
+V +E + T + +F+ EY N + Y SEN + + +
Sbjct: 64 VVRYYAAWLERRNFVKPXTAVKKKSTLFIQXEYCENRTLYDLIHSENLNQ---QRDEYWR 120
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ + +A+ ++HS G L NI +DE R K+ D+G++
Sbjct: 121 LFRQILEALSYIHSQ---GIIHRNLKPXNIFIDESRNVKIGDFGLA 163
>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution.
pdb|2JED|B Chain B, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution
Length = 352
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 123/312 (39%), Gaps = 64/312 (20%)
Query: 434 ELKEATNNFDSLSFMGEGSRGKLYKGRLEN-GTYVAIRSLTFLKKYSIQNLKVRLDFLSK 492
++K +F+ +G+GS GK++ + + AI++L K + + V + K
Sbjct: 12 QIKLKIEDFELHKMLGKGSFGKVFLAEFKKTNQFFAIKALK--KDVVLMDDDVECTMVEK 69
Query: 493 ------LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKW 546
+HP L + C ++ +F V EY+ G H+ ++C + L
Sbjct: 70 RVLSLAWEHPFLTHMF--CTFQTKEN------LFFVMEYLNGGDLMYHI-QSCHKFDLSR 120
Query: 547 SDRLA--ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE 604
+ A I++G+ FLHS G L +NILLD+ K++D+G+
Sbjct: 121 ATFYAAEIILGL----QFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMC------- 166
Query: 605 KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP-IVTG 663
K G+ + C T ++ Q+ D ++FG +L E L+G G
Sbjct: 167 KENMLGDAKTNEF-----CGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHG 221
Query: 664 KGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSR------ 717
+ E L + + R+ +P +E+ ++V K EP R
Sbjct: 222 QDEEELFHSI----------RMDNPFYPRWLEKEAKDLLV----KLFVREPEKRLGVRGD 267
Query: 718 ----PSFEDVLW 725
P F ++ W
Sbjct: 268 IRQHPLFREINW 279
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 110 LPDKI-HRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTNFFDDNVPDWWDSLSN 167
LP+ + L+SL L + N L ++P+G+ ++L L L + TN +D L+
Sbjct: 43 LPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101
Query: 168 LTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD--MSALTSLHVLDLRENKL 225
L L+L +NQL+ ++ L D+ + N+L +PD LTSL + L +N
Sbjct: 102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPW 160
Query: 226 DSGLP 230
D P
Sbjct: 161 DCTCP 165
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 110 LPDKI-HRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTNFFDDNVPDW-WDSLS 166
LP+ + ++L+SL L++S+N L ++P+G+ +L +L+ L ++TN ++PD +D L+
Sbjct: 67 LPNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLT 124
Query: 167 NLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALT 213
L L L NQLK R+ +L I + +N P + L+
Sbjct: 125 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS 171
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 123 LDMSSNFLFGAIPSGI-SRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQ 181
LD+ +N L ++P+G+ L L L + N ++ L++LT L+L +NQL+
Sbjct: 33 LDLETNSL-KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 182 FPSSICRIATLTDIAMSNNELSGKLPD--MSALTSLHVLDLRENKLDSGLPLMPKGLVTV 239
++ L ++A++ N+L LPD LT L L L +N+L S +P G+
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS----VPDGVFDR 146
Query: 240 LLS 242
L S
Sbjct: 147 LTS 149
>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDR|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With The Inhibitor
A- 443654
pdb|2UW9|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|2X39|A Chain A, Structure Of
4-Amino-N-(4-Chlorobenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidine-4-Carboxamide Bound To Pkb
pdb|2XH5|A Chain A, Structure Of 4-(4-Tert-Butylbenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidin-4-Amine Bound To Pkb
Length = 342
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 22/167 (13%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSL---TFLKKYSIQNLKVRLDFLS 491
K N+FD L +G+G+ GK+ R + G Y A++ L + K + + L
Sbjct: 6 KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 65
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLA 551
+HP L + L + ++ +++ V EY G HLS E V +++ A
Sbjct: 66 NTRHPFLTA-LKYAFQT-------HDRLCFVMEYANGGELFFHLSR---ERV--FTEERA 112
Query: 552 ILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
G + A+ +LHS + + N++LD+ K++D+G+
Sbjct: 113 RFYGAEIVSALEYLHSRDV---VYRDIKLENLMLDKDGHIKITDFGL 156
>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
Length = 328
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 17/160 (10%)
Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL--TFLKKYSIQNLKVRLDFLSKLQHPH 497
N+ L +G+G+ K+ R + G VAI+ + T L S+Q L + + L HP+
Sbjct: 16 NYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPN 75
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
+V L IE+ ++L+ EY G +L +K + + +
Sbjct: 76 IVKLF-EVIET-------EKTLYLIMEYASGGEVFDYL---VAHGRMKEKEARSKFRQIV 124
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
AV + H I L N+LLD K++D+G S
Sbjct: 125 SAVQYCHQKRI---VHRDLKAENLLLDADMNIKIADFGFS 161
>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B
Akt By Hydrophobic Motif Phosphorylation
pdb|1GZO|A Chain A, Structure Of Protein Kinase B Unphosphorylated
Length = 315
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 22/167 (13%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSL---TFLKKYSIQNLKVRLDFLS 491
K N+FD L +G+G+ GK+ R + G Y A++ L + K + + L
Sbjct: 1 KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 60
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLA 551
+HP L + L + ++ +++ V EY G HLS E V +++ A
Sbjct: 61 NTRHPFLTA-LKYAFQT-------HDRLCFVMEYANGGELFFHLSR---ERV--FTEERA 107
Query: 552 ILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
G + A+ +LHS + + N++LD+ K++D+G+
Sbjct: 108 RFYGAEIVSALEYLHSRDV---VYRDIKLENLMLDKDGHIKITDFGL 151
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/280 (19%), Positives = 113/280 (40%), Gaps = 58/280 (20%)
Query: 448 MGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIE 507
+G G G+++ T VA++++ S++ + + LQH LV L H +
Sbjct: 190 LGAGQFGEVWMATYNKHTKVAVKTMK-PGSMSVEAFLAEANVMKTLQHDKLVKL--HAV- 245
Query: 508 SGSQDDSNTNKVFLVYEYIPNGSYRAHL-----SENCPENVLKWSDRLAILIGVAKAVHF 562
++++ E++ GS L S+ ++ +S ++A + + ++
Sbjct: 246 ------VTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNY 299
Query: 563 LHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFI 622
+H L NIL+ + K++D+G+ AR G F
Sbjct: 300 IHRD---------LRAANILVSASLVCKIADFGL------------------ARVGAKFP 332
Query: 623 CRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVT-GKGEAFLLNEMASFGSQDG 681
+ +A ++ ++ DV++FG +L+E IVT G+ ++ + +
Sbjct: 333 IKWTAPE---AINFGSFTIKSDVWSFGILLME-----IVTYGRIPYPGMSNPEVIRALER 384
Query: 682 RRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
R+ P C +E +I++ +C P RP+FE
Sbjct: 385 GYRMPRP---ENCPEELYNIMM----RCWKNRPEERPTFE 417
>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d
With Gsk3 Peptide And Amp-Pnp
Length = 336
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 22/167 (13%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSL---TFLKKYSIQNLKVRLDFLS 491
K N+FD L +G+G+ GK+ R + G Y A++ L + K + + L
Sbjct: 1 KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 60
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLA 551
+HP L + L + ++ +++ V EY G HLS E V +++ A
Sbjct: 61 NTRHPFLTA-LKYAFQT-------HDRLCFVMEYANGGELFFHLSR---ERV--FTEERA 107
Query: 552 ILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
G + A+ +LHS + + N++LD+ K++D+G+
Sbjct: 108 RFYGAEIVSALEYLHSRDV---VYRDIKLENLMLDKDGHIKITDFGL 151
>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain
pdb|1MRY|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain
Length = 339
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 22/167 (13%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSL---TFLKKYSIQNLKVRLDFLS 491
K N+FD L +G+G+ GK+ R + G Y A++ L + K + + L
Sbjct: 4 KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 63
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLA 551
+HP L + L + ++ +++ V EY G HLS E V +++ A
Sbjct: 64 NTRHPFLTA-LKYAFQT-------HDRLCFVMEYANGGELFFHLSR---ERV--FTEERA 110
Query: 552 ILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
G + A+ +LHS + + N++LD+ K++D+G+
Sbjct: 111 RFYGAEIVSALEYLHSRDV---VYRDIKLENLMLDKDGHIKITDFGL 154
>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain
Length = 335
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 22/167 (13%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSL---TFLKKYSIQNLKVRLDFLS 491
K N+FD L +G+G+ GK+ R + G Y A++ L + K + + L
Sbjct: 1 KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 60
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLA 551
+HP L + L + ++ +++ V EY G HLS E V +++ A
Sbjct: 61 NTRHPFLTA-LKYAFQT-------HDRLCFVMEYANGGELFFHLSR---ERV--FTEERA 107
Query: 552 ILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
G + A+ +LHS + + N++LD+ K++D+G+
Sbjct: 108 RFYGAEIVSALEYLHSRDV---VYRDIKLENLMLDKDGHIKITDFGL 151
>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E87|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E88|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E88|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E8D|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E8D|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3D0E|A Chain A, Crystal Structure Of Human Akt2 In Complex With Gsk690693
pdb|3D0E|B Chain B, Crystal Structure Of Human Akt2 In Complex With Gsk690693
Length = 335
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 22/167 (13%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSL---TFLKKYSIQNLKVRLDFLS 491
K N+FD L +G+G+ GK+ R + G Y A++ L + K + + L
Sbjct: 1 KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 60
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLA 551
+HP L + L + ++ +++ V EY G HLS E V +++ A
Sbjct: 61 NTRHPFLTA-LKYAFQT-------HDRLCFVMEYANGGELFFHLSR---ERV--FTEERA 107
Query: 552 ILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
G + A+ +LHS + + N++LD+ K++D+G+
Sbjct: 108 RFYGAEIVSALEYLHSRDV---VYRDIKLENLMLDKDGHIKITDFGL 151
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 32/192 (16%)
Query: 116 RLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS 175
++S LD S+N L + L L+TL + N L L+ ++ +
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN-----------QLKELSKIAEMT 370
Query: 176 NQLKGQFPSSICRIATLTDIAMSNNELS--GKLPDMSALTSLHVLDLRENKL-DSGLPLM 232
Q+K +L + +S N +S K D S SL L++ N L D+ +
Sbjct: 371 TQMK-----------SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419
Query: 233 PKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
P + + L N +IP+Q +L LQ L+++ N L +P + L ++ + L +N
Sbjct: 420 PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Query: 293 MLSGTLPKDLSC 304
P D SC
Sbjct: 479 ------PWDCSC 484
>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
pdb|2PY3|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 76/173 (43%), Gaps = 34/173 (19%)
Query: 448 MGEGSRGKLY--------KGRLENGTYVAIRSLTF-LKKYSIQNLKVRLDFLSKL-QHPH 497
+GEG+ G++ K + + VA++ L + + +L ++ + + +H +
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS-------------ENCPENVL 544
+++LLG C + G ++++ Y G+ R +L PE +
Sbjct: 103 IINLLGACTQDGP--------LYVIVGYASKGNLREYLRARRPPGMEYSYDINRVPEEQM 154
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ D ++ +A+ + +L S L N+L+ E+ + K++D+G++
Sbjct: 155 TFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLA 204
>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid-
Regulated Kinase 1 In Complex With Amp-Pnp
pdb|3HDM|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 1
pdb|3HDN|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 2
Length = 373
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 31/196 (15%)
Query: 414 SQAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSL 472
SQ + LG +P + ++F L +G+GS GK+ R + + A++ L
Sbjct: 22 SQQINLGPSSNPHAKP----------SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVL 71
Query: 473 ---TFLKKYSIQNLKVRLDFLSK-LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPN 528
LKK +++ + L K ++HP LV L +K++ V +YI
Sbjct: 72 QKKAILKKKEEKHIMSERNVLLKNVKHPFLVGL--------HFSFQTADKLYFVLDYING 123
Query: 529 GSYRAHLS-ENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHR 587
G HL E C L+ R +A A+ +LHS I L NILLD
Sbjct: 124 GELFYHLQRERC---FLEPRARF-YAAEIASALGYLHSLNI---VYRDLKPENILLDSQG 176
Query: 588 IAKLSDYGISIIMEEH 603
L+D+G+ EH
Sbjct: 177 HIVLTDFGLCKENIEH 192
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 74/163 (45%), Gaps = 19/163 (11%)
Query: 446 SFMGEGSRGKLYKGRL--ENGT--YVAIRSLTF--LKKYSIQNLKVRLDFLSKLQHPHLV 499
+GEG G + +G L E+GT VA++++ + I+ + HP+++
Sbjct: 40 KILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVI 99
Query: 500 SLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL----SENCPENVLKWSDRLAILIG 555
LLG CIE SQ K ++ ++ G +L E P+++ L ++
Sbjct: 100 RLLGVCIEMSSQ---GIPKPMVILPFMKYGDLHTYLLYSRLETGPKHI-PLQTLLKFMVD 155
Query: 556 VAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGIS 597
+A + +L + +F +R L N +L + ++D+G+S
Sbjct: 156 IALGMEYLSNR----NFLHRDLAARNCMLRDDMTVCVADFGLS 194
>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb
Length = 350
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 82/180 (45%), Gaps = 29/180 (16%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK-LYKGRLENGTYVAIRSLTFLKKYSIQN 482
+PA T +L++ F+ + +G GS G+ + +E G + A++ L K ++
Sbjct: 32 NPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQ 84
Query: 483 LKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
++ L+ L + P LV L E +D+SN +++V EY P G +HL
Sbjct: 85 IEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYAPGGEMFSHL---- 132
Query: 540 PENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ ++S+ A + +LHS + L N+++D+ K++D+G +
Sbjct: 133 -RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLMIDQQGYIKVTDFGFA 188
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 118 SSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTNFFDDNVPDW-WDSLSNLTVLSLKS 175
SS L++ SN L ++P G+ +L +L L++ N ++PD +D L+ LT+L L
Sbjct: 28 SSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHE 85
Query: 176 NQLKGQFPSSICRIATLTDIAMSNNELSGKLPD--MSALTSLHVLDLRENKLDSGLP 230
N+L+ ++ L ++A+ N+L +PD LTSL + L N D P
Sbjct: 86 NKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B
(pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3
Peptide
Length = 337
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 22/167 (13%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSL---TFLKKYSIQNLKVRLDFLS 491
K N+FD L +G+G+ GK+ R + G Y A++ L + K + + L
Sbjct: 1 KVTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ 60
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLA 551
+HP L + L + ++ +++ V EY G HLS E V +++ A
Sbjct: 61 NTRHPFLTA-LKYAFQT-------HDRLCFVMEYANGGELFFHLSR---ERV--FTEERA 107
Query: 552 ILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
G + A+ +LHS + + N++LD+ K++D+G+
Sbjct: 108 RFYGAEIVSALEYLHSRDVV---YRDIKLENLMLDKDGHIKITDFGL 151
>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
pdb|1CDK|B Chain B, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
Length = 350
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 31/181 (17%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK--LYKGRLENGTYVAIRSLTFLKKYSIQ 481
+PA T +L++ F+ + +G GS G+ L K + E G + A++ L K ++
Sbjct: 32 NPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHK-ETGNHFAMKILDKQKVVKLK 83
Query: 482 NLKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN 538
++ L+ L + P LV L E +D+SN +++V EY+P G +HL
Sbjct: 84 QIEHTLNEKRILQAVNFPFLVKL-----EYSFKDNSN---LYMVMEYVPGGEMFSHL--- 132
Query: 539 CPENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
+ ++S+ A + +LHS + L N+L+D+ +++D+G
Sbjct: 133 --RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 597 S 597
+
Sbjct: 188 A 188
>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of
Camp-Dependent Protein Kinase And An Inhibitor Peptide
Displays An Open Conformation
Length = 350
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 31/181 (17%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK--LYKGRLENGTYVAIRSLTFLKKYSIQ 481
+PA T +L++ F+ + +G GS G+ L K + E G + A++ L K ++
Sbjct: 32 NPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHK-ETGNHFAMKILDKQKVVKLK 83
Query: 482 NLKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN 538
++ L+ L + P LV L E +D+SN +++V EY+P G +HL
Sbjct: 84 QIEHTLNEKRILQAVNFPFLVKL-----EYSFKDNSN---LYMVMEYVPGGEMFSHL--- 132
Query: 539 CPENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
+ ++S+ A + +LHS + L N+L+D+ +++D+G
Sbjct: 133 --RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 597 S 597
+
Sbjct: 188 A 188
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 117 LSSLELLDMSSN-FLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS 175
LSSLE+L M+ N F +P + L L L + + P ++SLS+L VL++ S
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 176 NQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALT 213
NQLK R+ +L I + N P + L+
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 541
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 111 PDKIHRLSSLELLDMSSNFLFGAIPSGI-SRLVRLQTLTMDTNFFDDNVP 159
P + LSSL++L+M+SN L ++P GI RL LQ + + TN +D + P
Sbjct: 487 PTAFNSLSSLQVLNMASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 250 IPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNML 294
+P F EL L LDLS L + P+ SL ++ L++ASN L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 110 LPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPD-WWDSLSNL 168
LPD L +L LD+S L P+ + L LQ L M +N +VPD +D L++L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL-KSVPDGIFDRLTSL 520
Query: 169 TVLSLKSN 176
+ L +N
Sbjct: 521 QKIWLHTN 528
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 164 SLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNEL-SGKLPDMSALTSLHVLDLRE 222
S L VL L +++ + ++ L+ + ++ N + S L S L+SL L E
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 223 NKLDSGLPLMPKGLVTVL----LSRNLF-SGAIPQQFGELAQLQHLDLSFNDLSGI 273
L S L P G + L ++ NL S +P+ F L L+HLDLS N + I
Sbjct: 110 TNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit
Of Camp- Dependent Protein Kinase Reveal Open And Closed
Conformations
Length = 350
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 31/181 (17%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK--LYKGRLENGTYVAIRSLTFLKKYSIQ 481
+PA T +L++ F+ + +G GS G+ L K + E G + A++ L K ++
Sbjct: 32 NPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHK-ETGNHFAMKILDKQKVVKLK 83
Query: 482 NLKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN 538
++ L+ L + P LV L E +D+SN +++V EY+P G +HL
Sbjct: 84 QIEHTLNEKRILQAVNFPFLVKL-----EYSFKDNSN---LYMVMEYVPGGEMFSHL--- 132
Query: 539 CPENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
+ ++S+ A + +LHS + L N+L+D+ +++D+G
Sbjct: 133 --RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLLIDQQGYIQVTDFGF 187
Query: 597 S 597
+
Sbjct: 188 A 188
>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9M|B Chain B, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9N|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 27
Length = 351
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 31/181 (17%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK--LYKGRLENGTYVAIRSLTFLKKYSIQ 481
SPA T +L++ F+ + +G GS G+ L K + E G + A++ L K ++
Sbjct: 33 SPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHK-ETGNHYAMKILDKQKVVKLK 84
Query: 482 NLKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN 538
++ L+ L + P LV L E +D+SN +++V EY P G +HL
Sbjct: 85 QIEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYAPGGEMFSHL--- 133
Query: 539 CPENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
+ ++S+ A + +LHS + L N+++D+ K++D+G
Sbjct: 134 --RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLMIDQQGYIKVTDFGF 188
Query: 597 S 597
+
Sbjct: 189 A 189
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 158 VPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM-SALTSLH 216
VPD D +N+TVL+L NQL+ ++ R + LT + + N +S P++ L L
Sbjct: 24 VPD--DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 81
Query: 217 VLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQ----QFGELAQLQHLDLSFNDLSG 272
VL+L+ N+L S L T L +L S +I + F + L LDLS N LS
Sbjct: 82 VLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 140
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 32/178 (17%)
Query: 156 DNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELS---------GKL 206
D+ P + L NLT+L L +N + + + L + + +N L+ G +
Sbjct: 475 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 534
Query: 207 PDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQ-FGELAQLQHLDL 265
+ L+ LH+L+L N D IP + F +L +L+ +DL
Sbjct: 535 YFLKGLSHLHILNLESNGFDE----------------------IPVEVFKDLFELKIIDL 572
Query: 266 SFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNC 323
N+L+ +P SV + ++ L+L N+++ K + + D R F C
Sbjct: 573 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 630
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 232 MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLAS 291
+P + + L+ N F +QL LD+ FN +S + P + LP + L+L
Sbjct: 28 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 87
Query: 292 NMLS 295
N LS
Sbjct: 88 NELS 91
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 24/176 (13%)
Query: 123 LDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQF 182
LD+S+N + S + R V LQ L + +N + D + SL +L L L N L
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 90
Query: 183 PSSICRIATLTDIAMSNNELS--GKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVL 240
S +++LT + + N G+ S LT L + LR +D+
Sbjct: 91 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI--LRVGNMDT------------- 135
Query: 241 LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISY--LHLASNML 294
F+ + F L L+ L++ +DL P L S+ N+S+ LH+ ++L
Sbjct: 136 -----FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 186
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 158 VPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM-SALTSLH 216
VPD D +N+TVL+L NQL+ ++ R + LT + + N +S P++ L L
Sbjct: 29 VPD--DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 86
Query: 217 VLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQ----QFGELAQLQHLDLSFNDLSG 272
VL+L+ N+L S L T L +L S +I + F + L LDLS N LS
Sbjct: 87 VLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 145
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 232 MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLAS 291
+P + + L+ N F +QL LD+ FN +S + P + LP + L+L
Sbjct: 33 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 92
Query: 292 NMLS 295
N LS
Sbjct: 93 NELS 96
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 32/178 (17%)
Query: 156 DNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELS---------GKL 206
D+ P + L NLT+L L +N + + + L + + +N L+ G +
Sbjct: 480 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 539
Query: 207 PDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQ-FGELAQLQHLDL 265
+ L+ LH+L+L N D IP + F +L +L+ +DL
Sbjct: 540 YFLKGLSHLHILNLESNGFDE----------------------IPVEVFKDLFELKIIDL 577
Query: 266 SFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNC 323
N+L+ +P SV + ++ L+L N+++ K + + D R F C
Sbjct: 578 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 635
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 158 VPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM-SALTSLH 216
VPD D +N+TVL+L NQL+ ++ R + LT + + N +S P++ L L
Sbjct: 19 VPD--DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 76
Query: 217 VLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQ----QFGELAQLQHLDLSFNDLSG 272
VL+L+ N+L S L T L +L S +I + F + L LDLS N LS
Sbjct: 77 VLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 32/178 (17%)
Query: 156 DNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELS---------GKL 206
D+ P + L NLT+L L +N + + + L + + +N L+ G +
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529
Query: 207 PDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQ-FGELAQLQHLDL 265
+ L+ LH+L+L N D IP + F +L +L+ +DL
Sbjct: 530 YFLKGLSHLHILNLESNGFDE----------------------IPVEVFKDLFELKIIDL 567
Query: 266 SFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFGGNC 323
N+L+ +P SV + ++ L+L N+++ K + + D R F C
Sbjct: 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 232 MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLAS 291
+P + + L+ N F +QL LD+ FN +S + P + LP + L+L
Sbjct: 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82
Query: 292 NMLS 295
N LS
Sbjct: 83 NELS 86
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 24/176 (13%)
Query: 123 LDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQF 182
LD+S+N + S + R V LQ L + +N + D + SL +L L L N L
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116
Query: 183 PSSICRIATLTDIAMSNNELS--GKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVL 240
S +++LT + + N G+ S LT L + LR +D+
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI--LRVGNMDT------------- 161
Query: 241 LSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISY--LHLASNML 294
F+ + F L L+ L++ +DL P L S+ N+S+ LH+ ++L
Sbjct: 162 -----FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212
>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
pdb|1Y8G|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
Length = 327
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 17/160 (10%)
Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL--TFLKKYSIQNLKVRLDFLSKLQHPH 497
N+ L +G+G+ K+ R + G VA++ + T L S+Q L + L HP+
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIXKVLNHPN 74
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
+V L IE+ ++LV EY G +L K + A +
Sbjct: 75 IVKLF-EVIET-------EKTLYLVXEYASGGEVFDYL---VAHGRXKEKEARAKFRQIV 123
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
AV + H I L N+LLD K++D+G S
Sbjct: 124 SAVQYCHQKFI---VHRDLKAENLLLDADXNIKIADFGFS 160
>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077)
pdb|1XH4|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|3BWJ|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Lead Compound Arc-1034
pdb|3KKV|A Chain A, Structure Of Pka With A Protein Kinase B-Selective
Inhibitor
Length = 350
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 29/180 (16%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK-LYKGRLENGTYVAIRSLTFLKKYSIQN 482
+PA T +L++ F+ + +G GS G+ + +E G + A++ L K ++
Sbjct: 32 NPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQ 84
Query: 483 LKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
++ L+ L + P LV L E +D+SN +++V EY+P G +HL
Sbjct: 85 IEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYVPGGEMFSHL---- 132
Query: 540 PENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ ++ + A + +LHS + L N+L+D+ +++D+G +
Sbjct: 133 -RRIGRFXEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLLIDQQGYIQVTDFGFA 188
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTF-LKKYSIQN 482
S Y + L E + L +GEG+ G +YK + G VA++ + + I +
Sbjct: 8 SSGRENLYFQGLME---KYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPS 64
Query: 483 LKVR-LDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVF-LVYEYIPNGSYRAHLSENCP 540
+R + L +L HP++VSL+ D ++ + LV+E++ + L EN
Sbjct: 65 TAIREISLLKELHHPNIVSLI---------DVIHSERCLTLVFEFM-EKDLKKVLDEN-- 112
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ L+ S L + + V H I L N+L++ KL+D+G++
Sbjct: 113 KTGLQDSQIKIYLYQLLRGVAHCHQHRI---LHRDLKPQNLLINSDGALKLADFGLA 166
>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
A- 443654
Length = 351
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 29/180 (16%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK-LYKGRLENGTYVAIRSLTFLKKYSIQN 482
+PA T +L++ F+ + +G GS G+ + +E G + A++ L K ++
Sbjct: 33 NPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQ 85
Query: 483 LKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
++ L+ L + P LV L E +D+SN +++V EY+P G +HL
Sbjct: 86 IEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYVPGGEMFSHL---- 133
Query: 540 PENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ ++ + A + +LHS + L N+L+D+ +++D+G +
Sbjct: 134 -RRIGRFXEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLLIDQQGYIQVTDFGFA 189
>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 29/180 (16%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK-LYKGRLENGTYVAIRSLTFLKKYSIQN 482
+PA T +L++ F+ + +G GS G+ + +E G + A++ L K ++
Sbjct: 32 NPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQ 84
Query: 483 LKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
++ L+ L + P LV L E +D+SN +++V EY+P G +HL
Sbjct: 85 IEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYVPGGEMFSHLR--- 133
Query: 540 PENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ ++ + A + +LHS + L N+L+D+ +++D+G +
Sbjct: 134 --RIGRFXEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLLIDQQGYIQVTDFGFA 188
>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120
Length = 316
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 96/245 (39%), Gaps = 41/245 (16%)
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN-------CPENVLKW 546
H ++V+LLG C + G + ++ E+ G+ +L PE++ K
Sbjct: 91 HHLNVVNLLGACTKPG-------GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKPEDLYKD 143
Query: 547 SDRLAILIG----VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE 602
L LI VAK + FL S L NILL E + K+ D+G++ + +
Sbjct: 144 FLTLEHLIXYSFQVAKGMEFLASR---KXIHRDLAARNILLSEKNVVKICDFGLARDIXK 200
Query: 603 HEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVT 662
KG+ AR ++ + + V + + DV++FG +L E + +
Sbjct: 201 DPDXVRKGD---ARLPLKWMAPETIFDRVYTI-------QSDVWSFGVLLWE--IFSLGA 248
Query: 663 GKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFED 722
++E ++G R Q L C EPS RP+F +
Sbjct: 249 SPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLD--------CWHGEPSQRPTFSE 300
Query: 723 VLWNL 727
++ +L
Sbjct: 301 LVEHL 305
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTF-LKKYSIQN 482
S Y + L E + L +GEG+ G +YK + G VA++ + + I +
Sbjct: 8 SSGRENLYFQGLME---KYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPS 64
Query: 483 LKVR-LDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVF-LVYEYIPNGSYRAHLSENCP 540
+R + L +L HP++VSL+ D ++ + LV+E++ + L EN
Sbjct: 65 TAIREISLLKELHHPNIVSLI---------DVIHSERCLTLVFEFM-EKDLKKVLDEN-- 112
Query: 541 ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ L+ S L + + V H I L N+L++ KL+D+G++
Sbjct: 113 KTGLQDSQIKIYLYQLLRGVAHCHQHRI---LHRDLKPQNLLINSDGALKLADFGLA 166
>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2
With A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 318
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 97/247 (39%), Gaps = 43/247 (17%)
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS---------ENCPENVL 544
H ++V+LLG C + G + ++ E+ G+ +L + PE++
Sbjct: 91 HHLNVVNLLGACTKPG-------GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKEAPEDLY 143
Query: 545 KWSDRLAILI----GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
K L LI VAK + FL S L NILL E + K+ D+G++ +
Sbjct: 144 KDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDI 200
Query: 601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
+ KG+ AR ++ + + V + + DV++FG +L E + +
Sbjct: 201 YKDPDYVRKGD---ARLPLKWMAPETIFDRVYTI-------QSDVWSFGVLLWE--IFSL 248
Query: 661 VTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
++E ++G R Q L C EPS RP+F
Sbjct: 249 GASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLD--------CWHGEPSQRPTF 300
Query: 721 EDVLWNL 727
+++ +L
Sbjct: 301 SELVEHL 307
>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer
Length = 395
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 21/168 (12%)
Query: 434 ELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK-KYSIQNLKVR-LDFLS 491
ELK+ ++F+ +S +G G+ G ++K + V R L L+ K +I+N +R L L
Sbjct: 64 ELKD--DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLH 121
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDR 549
+ P++V G G ++ + E++ GS L + PE +L
Sbjct: 122 ECNSPYIVGFYGAFYSDG--------EISICMEHMDGGSLDQVLKKAGRIPEQILG---- 169
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ I V K + +L + +NIL++ KL D+G+S
Sbjct: 170 -KVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVS 214
>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|C Chain C, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|D Chain D, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|E Chain E, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|F Chain F, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|G Chain G, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|H Chain H, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
Length = 328
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 17/160 (10%)
Query: 441 NFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSL--TFLKKYSIQNLKVRLDFLSKLQHPH 497
N+ +G+G+ K+ R + G VA++ + T L S+Q L + + L HP+
Sbjct: 16 NYRLQKTIGKGNFAKVKLARHVLTGREVAVKIIDKTQLNPTSLQKLFREVRIMKILNHPN 75
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
+V L IE+ ++LV EY G +L +K + A +
Sbjct: 76 IVKLF-EVIET-------EKTLYLVMEYASGGEVFDYL---VAHGRMKEKEARAKFRQIV 124
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
AV + H I L N+LLD K++D+G S
Sbjct: 125 SAVQYCHQKYI---VHRDLKAENLLLDGDMNIKIADFGFS 161
>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered
N- Terminal Helix
pdb|1XHA|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 83/180 (46%), Gaps = 29/180 (16%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK-LYKGRLENGTYVAIRSLTFLKKYSIQN 482
+PA T +L++ F+ + +G GS G+ + +E G + A++ L K ++
Sbjct: 32 NPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKE 84
Query: 483 LKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
++ L+ L + P LV L E +D+SN +++V EY P G +HL
Sbjct: 85 IEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYAPGGEMFSHL---- 132
Query: 540 PENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ ++S+ A + +LHS + L N+++D+ +++D+G++
Sbjct: 133 -RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLMIDQQGYIQVTDFGLA 188
>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1
pdb|3BLQ|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
ATP
pdb|3BLR|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
Flavopiridol
pdb|3MY1|A Chain A, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
pdb|3LQ5|A Chain A, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
pdb|3TN8|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNH|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|A Chain A, Structure Of Cdk9CYCLIN T F241L
pdb|4BCH|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCI|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCJ|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 437 EATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKK---YSIQNLKVRLDFLSK 492
+ + ++ L+ +G+G+ G+++K R + G VA++ + + + I L+ + L
Sbjct: 15 DEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALR-EIKILQL 73
Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVL---KWSDR 549
L+H ++V+L+ C S + ++LV+++ H NVL S+
Sbjct: 74 LKHENVVNLIEICRTKASPYNRCKGSIYLVFDFC------EHDLAGLLSNVLVKFTLSEI 127
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
++ + ++++H + I + N+L+ + KL+D+G++
Sbjct: 128 KRVMQMLLNGLYYIHRNKI---LHRDMKAANVLITRDGVLKLADFGLA 172
>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel
4-amino-furo[2,3-d]pyrimidine
Length = 316
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 96/247 (38%), Gaps = 43/247 (17%)
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN---------CPENVL 544
H ++V+LLG C + G + ++ E+ G+ +L PE++
Sbjct: 89 HHLNVVNLLGACTKPG-------GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLY 141
Query: 545 KWSDRLAILI----GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
K L LI VAK + FL S L NILL E + K+ D+G++ +
Sbjct: 142 KDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDI 198
Query: 601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
+ KG+ AR ++ + + V + + DV++FG +L E + +
Sbjct: 199 XKDPDXVRKGD---ARLPLKWMAPETIFDRVYTI-------QSDVWSFGVLLWE--IFSL 246
Query: 661 VTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
++E ++G R Q L C EPS RP+F
Sbjct: 247 GASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLD--------CWHGEPSQRPTF 298
Query: 721 EDVLWNL 727
+++ +L
Sbjct: 299 SELVEHL 305
>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea
Inhibitor
Length = 316
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 96/246 (39%), Gaps = 42/246 (17%)
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN--------CPENVLK 545
H ++V+LLG C + G + ++ E+ G+ +L PE++ K
Sbjct: 90 HHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLSTYLRSKRNEFVPYKTPEDLYK 142
Query: 546 WSDRLAILI----GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIME 601
L LI VAK + FL S L NILL E + K+ D+G++ +
Sbjct: 143 DFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIX 199
Query: 602 EHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIV 661
+ KG+ AR ++ + + V + + DV++FG +L E + +
Sbjct: 200 KDPDXVRKGD---ARLPLKWMAPETIFDRVYTI-------QSDVWSFGVLLWE--IFSLG 247
Query: 662 TGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFE 721
++E ++G R Q L C EPS RP+F
Sbjct: 248 ASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLD--------CWHGEPSQRPTFS 299
Query: 722 DVLWNL 727
+++ +L
Sbjct: 300 ELVEHL 305
>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And
Drb
pdb|4EC9|A Chain A, Crystal Structure Of Full-Length Cdk9 In Complex With
Cyclin T
Length = 373
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 437 EATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKK---YSIQNLKVRLDFLSK 492
+ + ++ L+ +G+G+ G+++K R + G VA++ + + + I L+ + L
Sbjct: 15 DEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALR-EIKILQL 73
Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVL---KWSDR 549
L+H ++V+L+ C S + ++LV+++ H NVL S+
Sbjct: 74 LKHENVVNLIEICRTKASPYNRCKGSIYLVFDFC------EHDLAGLLSNVLVKFTLSEI 127
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
++ + ++++H + I + N+L+ + KL+D+G++
Sbjct: 128 KRVMQMLLNGLYYIHRNKI---LHRDMKAANVLITRDGVLKLADFGLA 172
>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
pdb|4AE9|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
Length = 343
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 31/181 (17%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK--LYKGRLENGTYVAIRSLTFLKKYSIQ 481
SPA T +L++ F+ + +G GS G+ L K + E G + A++ L K ++
Sbjct: 25 SPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHK-ETGNHYAMKILDKQKVVKLK 76
Query: 482 NLKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN 538
++ L+ L + P LV L E +D+SN +++V EY+P G +HL
Sbjct: 77 QIEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYVPGGEMFSHL--- 125
Query: 539 CPENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
+ ++ + A + +LHS + L N+L+D+ +++D+G
Sbjct: 126 --RRIGRFXEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLLIDQQGYIQVTDFGF 180
Query: 597 S 597
+
Sbjct: 181 A 181
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 21/170 (12%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK-KYSIQNLKVR-LDF 489
L ELK+ ++F+ +S +G G+ G ++K + V R L L+ K +I+N +R L
Sbjct: 3 LGELKD--DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQV 60
Query: 490 LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWS 547
L + P++V G G ++ + E++ GS L + PE +L
Sbjct: 61 LHECNSPYIVGFYGAFYSDG--------EISICMEHMDGGSLDQVLKKAGRIPEQILG-- 110
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ I V K + +L + +NIL++ KL D+G+S
Sbjct: 111 ---KVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVS 155
>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|2P2I|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|3EFL|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
pdb|3EFL|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
Length = 314
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 96/247 (38%), Gaps = 43/247 (17%)
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN---------CPENVL 544
H ++V+LLG C + G + ++ E+ G+ +L PE++
Sbjct: 80 HHLNVVNLLGACTKPG-------GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLY 132
Query: 545 KWSDRLAILI----GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
K L LI VAK + FL S L NILL E + K+ D+G++ +
Sbjct: 133 KDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDI 189
Query: 601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
+ KG+ AR ++ + + V + + DV++FG +L E + +
Sbjct: 190 XKDPDXVRKGD---ARLPLKWMAPETIFDRVYTI-------QSDVWSFGVLLWE--IFSL 237
Query: 661 VTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
++E ++G R Q L C EPS RP+F
Sbjct: 238 GASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLD--------CWHGEPSQRPTF 289
Query: 721 EDVLWNL 727
+++ +L
Sbjct: 290 SELVEHL 296
>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Axitinib (Ag-013736)
(N-Methyl-2-(
3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-
Benzamide)
pdb|4AGD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sunitinib (Su11248) (N-2-
Diethylaminoethyl)-5-((Z)-(5-Fluoro-2-Oxo-1h-Indol-3-
Ylidene)methyl)-2,4-Dimethyl-1h-Pyrrole-3-Carboxamide)
pdb|4ASD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sorafenib (Bay 43-9006)
pdb|4ASE|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Tivozanib (Av-951)
Length = 353
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 96/247 (38%), Gaps = 43/247 (17%)
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN---------CPENVL 544
H ++V+LLG C + G + ++ E+ G+ +L PE++
Sbjct: 126 HHLNVVNLLGACTKPG-------GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLY 178
Query: 545 KWSDRLAILI----GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
K L LI VAK + FL S L NILL E + K+ D+G++ +
Sbjct: 179 KDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDI 235
Query: 601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
+ KG+ AR ++ + + V + + DV++FG +L E + +
Sbjct: 236 YKDPDYVRKGD---ARLPLKWMAPETIFDRVYTI-------QSDVWSFGVLLWE--IFSL 283
Query: 661 VTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
++E ++G R Q L C EPS RP+F
Sbjct: 284 GASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLD--------CWHGEPSQRPTF 335
Query: 721 EDVLWNL 727
+++ +L
Sbjct: 336 SELVEHL 342
>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
Length = 333
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 21/168 (12%)
Query: 434 ELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK-KYSIQNLKVR-LDFLS 491
ELK+ ++F+ +S +G G+ G ++K + V R L L+ K +I+N +R L L
Sbjct: 2 ELKD--DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLH 59
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDR 549
+ P++V G G ++ + E++ GS L + PE +L
Sbjct: 60 ECNSPYIVGFYGAFYSDG--------EISICMEHMDGGSLDQVLKKAGRIPEQILG---- 107
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ I V K + +L + +NIL++ KL D+G+S
Sbjct: 108 -KVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVS 152
>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And
Potent Inhibitors For Akt: Synthesis And Sar Studies
Length = 337
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 24/165 (14%)
Query: 440 NNFDSLSFMGEGSRGK--LYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLD---FLSKLQ 494
+ FD + +G GS G+ L K + E+G + A++ L K ++ ++ L+ L +
Sbjct: 28 DQFDRIKTLGTGSFGRVMLVKHK-ESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN 86
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
P LV L E +D+SN +++V EY+ G +HL + ++S+ A
Sbjct: 87 FPFLVKL-----EFSFKDNSN---LYMVMEYVAGGEMFSHL-----RRIGRFSEPHARFY 133
Query: 555 G--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ +LHS + L N+L+DE +++D+G +
Sbjct: 134 AAQIVLTFEYLHSLDL---IYRDLKPENLLIDEQGYIQVTDFGFA 175
>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4987655 And Mgamp-Pnp
pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4858061 And Mgatp
Length = 307
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 21/168 (12%)
Query: 434 ELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK-KYSIQNLKVR-LDFLS 491
ELK+ ++F+ +S +G G+ G ++K + V R L L+ K +I+N +R L L
Sbjct: 2 ELKD--DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLH 59
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDR 549
+ P++V G G ++ + E++ GS L + PE +L
Sbjct: 60 ECNSPYIVGFYGAFYSDG--------EISICMEHMDGGSLDQVLKKAGRIPEQILG---- 107
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ I V K + +L + +NIL++ KL D+G+S
Sbjct: 108 -KVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVS 152
>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 351
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 437 EATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKK---YSIQNLKVRLDFLSK 492
+ + ++ L+ +G+G+ G+++K R + G VA++ + + + I L+ + L
Sbjct: 14 DEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALR-EIKILQL 72
Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVL---KWSDR 549
L+H ++V+L+ C S + ++LV+++ H NVL S+
Sbjct: 73 LKHENVVNLIEICRTKASPYNRCKGSIYLVFDFC------EHDLAGLLSNVLVKFTLSEI 126
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
++ + ++++H + I + N+L+ + KL+D+G++
Sbjct: 127 KRVMQMLLNGLYYIHRNKI---LHRDMKAANVLITRDGVLKLADFGLA 171
>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
pdb|2CLQ|B Chain B, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
Length = 295
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 126/300 (42%), Gaps = 44/300 (14%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFL 490
LE E N D + +G+G+ G +Y GR L N +AI+ + Q L +
Sbjct: 15 LEYDYEYDENGDRV-VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALH 73
Query: 491 SKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRL 550
L+H ++V LG E+G K+F+ E +P GS A L LK +++
Sbjct: 74 KHLKHKNIVQYLGSFSENG------FIKIFM--EQVPGGSLSALLRSKW--GPLKDNEQ- 122
Query: 551 AILIG-----VAKAVHFLHSSVISGSFSNRLTTNNILLDEHR-IAKLSDYGISIIMEEHE 604
IG + + + +LH + I + +N+L++ + + K+SD+G S +
Sbjct: 123 --TIGFYTKQILEGLKYLHDNQI---VHRDIKGDNVLINTYSGVLKISDFGTSKRL---- 173
Query: 605 KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGK 664
G P F + A ++ K D+++ G ++E + TGK
Sbjct: 174 ----AGINPCTE-TFTGTLQYMAPEIIDKGPRGYGKAA-DIWSLGCTIIE-----MATGK 222
Query: 665 GEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
+ L E + + G + V P + + S E+ + ++ KC P+P R D+L
Sbjct: 223 PPFYELGEPQAAMFKVGMFK-VHPEIPESMSAEAKAFIL----KCFEPDPDKRACANDLL 277
>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy)
Quinolin-4-Yloxy)benzofuran-3-Carboxamide)
pdb|4AG8|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Axitinib (Ag-013736)
(N-Methyl-2-(3-((E)-2-Pyridin-2-
Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-Benzamide)
Length = 316
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 96/247 (38%), Gaps = 43/247 (17%)
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN---------CPENVL 544
H ++V+LLG C + G + ++ E+ G+ +L PE++
Sbjct: 89 HHLNVVNLLGACTKPG-------GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLY 141
Query: 545 KWSDRLAILI----GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
K L LI VAK + FL S L NILL E + K+ D+G++ +
Sbjct: 142 KDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDI 198
Query: 601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
+ KG+ AR ++ + + V + + DV++FG +L E + +
Sbjct: 199 YKDPDYVRKGD---ARLPLKWMAPETIFDRVYTI-------QSDVWSFGVLLWE--IFSL 246
Query: 661 VTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
++E ++G R Q L C EPS RP+F
Sbjct: 247 GASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLD--------CWHGEPSQRPTF 298
Query: 721 EDVLWNL 727
+++ +L
Sbjct: 299 SELVEHL 305
>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp
pdb|1Q62|A Chain A, Pka Double Mutant Model Of Pkb
Length = 350
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 29/180 (16%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK-LYKGRLENGTYVAIRSLTFLKKYSIQN 482
+PA T +L++ F+ + +G GS G+ + +E G + A++ L K ++
Sbjct: 32 NPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQ 84
Query: 483 LKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
++ L+ L + P LV L E +D+SN +++V EY P G +HL
Sbjct: 85 IEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYAPGGEMFSHL---- 132
Query: 540 PENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ ++S+ A + +LHS + L N+++D+ +++D+G +
Sbjct: 133 -RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLMIDQQGYIQVTDFGFA 188
>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) Complexed With A Potent Inhibitor
Rdea119 And Mgatp
pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions.
pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions
Length = 341
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 21/168 (12%)
Query: 434 ELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK-KYSIQNLKVR-LDFLS 491
ELK+ ++F+ +S +G G+ G ++K + V R L L+ K +I+N +R L L
Sbjct: 2 ELKD--DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLH 59
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDR 549
+ P++V G G ++ + E++ GS L + PE +L
Sbjct: 60 ECNSPYIVGFYGAFYSDG--------EISICMEHMDGGSLDQVLKKAGRIPEQILG---- 107
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ I V K + +L + +NIL++ KL D+G+S
Sbjct: 108 -KVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVS 152
>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridinyl-Triazine Inhibitor
pdb|2QU5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzimidazole Inhibitor
pdb|2QU6|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|2QU6|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|3B8Q|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8Q|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|2RL5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A 2,3-Dihydro-1,4-Benzoxazine Inhibitor
pdb|3BE2|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzamide Inhibitor
pdb|3CP9|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CP9|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPB|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPB|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPC|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPC|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3DTW|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
pdb|3DTW|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
Length = 314
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 96/247 (38%), Gaps = 43/247 (17%)
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN---------CPENVL 544
H ++V+LLG C + G + ++ E+ G+ +L PE++
Sbjct: 80 HHLNVVNLLGACTKPG-------GPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLY 132
Query: 545 KWSDRLAILI----GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
K L LI VAK + FL S L NILL E + K+ D+G++ +
Sbjct: 133 KDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDI 189
Query: 601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
+ KG+ AR ++ + + V + + DV++FG +L E + +
Sbjct: 190 XKDPDXVRKGD---ARLPLKWMAPETIFDRVYTI-------QSDVWSFGVLLWE--IFSL 237
Query: 661 VTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
++E ++G R Q L C EPS RP+F
Sbjct: 238 GASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLD--------CWHGEPSQRPTF 289
Query: 721 EDVLWNL 727
+++ +L
Sbjct: 290 SELVEHL 296
>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYD|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp.
pdb|1ZYD|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp
Length = 303
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Query: 439 TNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPH 497
++F+ ++ +G+G+ G++ K R + Y AI+ + ++ + + + L+ L H +
Sbjct: 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEE-KLSTILSEVMLLASLNHQY 63
Query: 498 LVSLLGHCIESGSQDDSNT-----NKVFLVYEYIPNGS-YRAHLSENCPENVLKWSDRLA 551
+V +E + T + +F+ EY N + Y SEN + + +
Sbjct: 64 VVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENRTLYDLIHSENLNQ---QRDEYWR 120
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ + +A+ ++HS G L NI +DE R K+ D+G++
Sbjct: 121 LFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNVKIGDFGLA 163
>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 437 EATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKK---YSIQNLKVRLDFLSK 492
+ + ++ L+ +G+G+ G+++K R + G VA++ + + + I L+ + L
Sbjct: 15 DEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALR-EIKILQL 73
Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVL---KWSDR 549
L+H ++V+L+ C S + ++LV+++ H NVL S+
Sbjct: 74 LKHENVVNLIEICRTKASPYNRCKASIYLVFDFC------EHDLAGLLSNVLVKFTLSEI 127
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
++ + ++++H + I + N+L+ + KL+D+G++
Sbjct: 128 KRVMQMLLNGLYYIHRNKI---LHRDMKAANVLITRDGVLKLADFGLA 172
>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With
Compound 1, Atp-Gs And Mg2p
pdb|3EQD|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Atp-Gs
And Mg2p
pdb|3EQF|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With K252a
And Mg2p
pdb|3EQG|A Chain A, X-ray Structure Of The Human Mitogen-activated Protein
Kinase Kinase 1 (mek1) In A Ternary Complex With Pd, Adp
And Mg2p
pdb|3EQH|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With U0126,
Adp And Mg2p
pdb|3EQI|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Adp And
Mg2p
Length = 360
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 21/168 (12%)
Query: 434 ELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK-KYSIQNLKVR-LDFLS 491
ELK+ ++F+ +S +G G+ G ++K + V R L L+ K +I+N +R L L
Sbjct: 29 ELKD--DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLH 86
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDR 549
+ P++V G G ++ + E++ GS L + PE +L
Sbjct: 87 ECNSPYIVGFYGAFYSDG--------EISICMEHMDGGSLDQVLKKAGRIPEQILG---- 134
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ I V K + +L + +NIL++ KL D+G+S
Sbjct: 135 -KVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVS 179
>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr)
Kinase Domain
Length = 316
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 96/247 (38%), Gaps = 43/247 (17%)
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN---------CPENVL 544
H ++V+LLG C + G + ++ E+ G+ +L PE++
Sbjct: 89 HHLNVVNLLGACTKPG-------GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLY 141
Query: 545 KWSDRLAILI----GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
K L LI VAK + FL S L NILL E + K+ D+G++ +
Sbjct: 142 KDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDI 198
Query: 601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
+ KG+ AR ++ + + V + + DV++FG +L E + +
Sbjct: 199 YKDPDXVRKGD---ARLPLKWMAPETIFDRVYTI-------QSDVWSFGVLLWE--IFSL 246
Query: 661 VTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
++E ++G R Q L C EPS RP+F
Sbjct: 247 GASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLD--------CWHGEPSQRPTF 298
Query: 721 EDVLWNL 727
+++ +L
Sbjct: 299 SELVEHL 305
>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp
pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgatp
Length = 328
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 21/168 (12%)
Query: 434 ELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK-KYSIQNLKVR-LDFLS 491
ELK+ ++F+ +S +G G+ G ++K + V R L L+ K +I+N +R L L
Sbjct: 2 ELKD--DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLH 59
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDR 549
+ P++V G G ++ + E++ GS L + PE +L
Sbjct: 60 ECNSPYIVGFYGAFYSDG--------EISICMEHMDGGSLDQVLKKAGRIPEQILG---- 107
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ I V K + +L + +NIL++ KL D+G+S
Sbjct: 108 -KVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVS 152
>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
Length = 322
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 21/168 (12%)
Query: 434 ELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK-KYSIQNLKVR-LDFLS 491
ELK+ ++F+ +S +G G+ G ++K + V R L L+ K +I+N +R L L
Sbjct: 2 ELKD--DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLH 59
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDR 549
+ P++V G G ++ + E++ GS L + PE +L
Sbjct: 60 ECNSPYIVGFYGAFYSDG--------EISICMEHMDGGSLDQVLKKAGRIPEQILG---- 107
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ I V K + +L + +NIL++ KL D+G+S
Sbjct: 108 -KVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVS 152
>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
pdb|3VW6|B Chain B, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
Length = 269
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 126/300 (42%), Gaps = 44/300 (14%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKVRLDFL 490
LE E N D + +G+G+ G +Y GR L N +AI+ + Q L +
Sbjct: 1 LEYDYEYDENGDRV-VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALH 59
Query: 491 SKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRL 550
L+H ++V LG E+G K+F+ E +P GS A L LK +++
Sbjct: 60 KHLKHKNIVQYLGSFSENG------FIKIFM--EQVPGGSLSALLRSKW--GPLKDNEQ- 108
Query: 551 AILIG-----VAKAVHFLHSSVISGSFSNRLTTNNILLDEHR-IAKLSDYGISIIMEEHE 604
IG + + + +LH + I + +N+L++ + + K+SD+G S +
Sbjct: 109 --TIGFYTKQILEGLKYLHDNQI---VHRDIKGDNVLINTYSGVLKISDFGTSKRL---- 159
Query: 605 KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGK 664
G P F + A ++ K D+++ G ++E + TGK
Sbjct: 160 ----AGINPCTE-TFTGTLQYMAPEIIDKGPRGYGKAA-DIWSLGCTIIE-----MATGK 208
Query: 665 GEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
+ L E + + G + V P + + S E+ + ++ KC P+P R D+L
Sbjct: 209 PPFYELGEPQAAMFKVGMFK-VHPEIPESMSAEAKAFIL----KCFEPDPDKRACANDLL 263
>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
Length = 351
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 29/180 (16%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK-LYKGRLENGTYVAIRSLTFLKKYSIQN 482
+PA T +L++ F+ + +G GS G+ + +E G + A++ L K ++
Sbjct: 33 NPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQ 85
Query: 483 LKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
++ L+ L + P L L E +D+SN +++V EY P G +HL
Sbjct: 86 IEHTLNEKRILQAVNFPFLTKL-----EFSFKDNSN---LYMVMEYAPGGEMFSHL---- 133
Query: 540 PENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ ++S+ A + +LHS + L N+++D+ K++D+G +
Sbjct: 134 -RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLMIDQQGYIKVTDFGFA 189
>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDV|A Chain A, Structure Of Pka-Pkb Chimera Complexed With A-443654
pdb|2UVX|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 7-Azaindole
pdb|2UW4|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
2-(4-(5-Methyl- 1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW7|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|4AXA|A Chain A, Structure Of Pka-pkb Chimera Complexed With
(1s)-2-amino-1-(
4-chlorophenyl)-1-(4-(1h-pyrazol-4-yl)phenyl)ethan-1-ol
Length = 351
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 29/180 (16%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK-LYKGRLENGTYVAIRSLTFLKKYSIQN 482
+PA T +L++ F+ + +G GS G+ + +E G + A++ L K ++
Sbjct: 33 NPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQ 85
Query: 483 LKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
++ L+ L + P L L E +D+SN +++V EY P G +HL
Sbjct: 86 IEHTLNEKRILQAVNFPFLTKL-----EFSFKDNSN---LYMVMEYAPGGEMFSHL---- 133
Query: 540 PENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ ++S+ A + +LHS + L N+++D+ K++D+G +
Sbjct: 134 -RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLMIDQQGYIKVTDFGFA 189
>pdb|2IWI|A Chain A, Crystal Structure Of The Human Pim2 In Complex With A
Ruthenium Organometallic Ligand Ru1
pdb|2IWI|B Chain B, Crystal Structure Of The Human Pim2 In Complex With A
Ruthenium Organometallic Ligand Ru1
Length = 312
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 36/170 (21%)
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHR-IAKLSDYGISIIMEEHEKLEAKGEGPK 614
V A+ HS G + NIL+D R AKL D+G ++ H++ +G +
Sbjct: 148 VVAAIQHCHSR---GVVHRDIKDENILIDLRRGCAKLIDFGSGALL--HDEPYTDFDGTR 202
Query: 615 ARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGKGEAFLLNEMA 674
+I R Q L V++ G +L + + G I + + L E+
Sbjct: 203 VYSPPEWISRH-----------QYHALPATVWSLGILLYDMVCGDIPFERDQEILEAEL- 250
Query: 675 SFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
F + V C ++ +C+ P+PSSRPS E++L
Sbjct: 251 HFPAH----------VSPDC--------CALIRRCLAPKPSSRPSLEEIL 282
>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
pdb|1SZM|B Chain B, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
Length = 350
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 29/180 (16%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK-LYKGRLENGTYVAIRSLTFLKKYSIQN 482
+PA T +L++ F+ + +G GS G+ + +E G + A++ L K ++
Sbjct: 32 NPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQ 84
Query: 483 LKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
++ L+ L + P LV L E +D+SN +++V EY P G +HL
Sbjct: 85 IEHTLNEKRILQAVNFPFLVKL-----EFSFKDNSN---LYMVMEYAPGGEMFSHL---- 132
Query: 540 PENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ ++ + A + +LHS + L N+++D+ K++D+G +
Sbjct: 133 -RRIGRFXEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLMIDQQGYIKVTDFGFA 188
>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
pdb|2I6L|B Chain B, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
Length = 320
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 15/144 (10%)
Query: 467 VAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQ--DD----SNTNKVF 520
VAI+ + S+++ + + +L H ++V + SGSQ DD + N V+
Sbjct: 39 VAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVY 98
Query: 521 LVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNN 580
+V EY+ A++ E P +L+ RL + + + + ++HS+ + L N
Sbjct: 99 IVQEYMETD--LANVLEQGP--LLEEHARL-FMYQLLRGLKYIHSANV---LHRDLKPAN 150
Query: 581 ILLD-EHRIAKLSDYGISIIMEEH 603
+ ++ E + K+ D+G++ IM+ H
Sbjct: 151 LFINTEDLVLKIGDFGLARIMDPH 174
>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridyl-Pyrimidine Benzimidazole Inhibitor
Length = 314
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 96/247 (38%), Gaps = 43/247 (17%)
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN---------CPENVL 544
H ++V+LLG C + G + ++ E+ G+ +L PE++
Sbjct: 80 HHLNVVNLLGACTKPG-------GPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLY 132
Query: 545 KWSDRLAILI----GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
K L LI VAK + FL S L NILL E + K+ D+G++ +
Sbjct: 133 KDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDI 189
Query: 601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
+ KG+ AR ++ + + V + + DV++FG +L E + +
Sbjct: 190 YKDPDYVRKGD---ARLPLKWMAPETIFDRVYTI-------QSDVWSFGVLLWE--IFSL 237
Query: 661 VTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
++E ++G R Q L C EPS RP+F
Sbjct: 238 GASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLD--------CWHGEPSQRPTF 289
Query: 721 EDVLWNL 727
+++ +L
Sbjct: 290 SELVEHL 296
>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With
Staurosporine At 2a Resolution
Length = 345
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 122/312 (39%), Gaps = 64/312 (20%)
Query: 434 ELKEATNNFDSLSFMGEGSRGKLYKGRLEN-GTYVAIRSLTFLKKYSIQNLKVRLDFLSK 492
++K +F +G+GS GK++ + + AI++L K + + V + K
Sbjct: 11 QIKLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALK--KDVVLMDDDVECTMVEK 68
Query: 493 ------LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKW 546
+HP L + C ++ +F V EY+ G H+ ++C + L
Sbjct: 69 RVLSLAWEHPFLTHMF--CTFQTKEN------LFFVMEYLNGGDLMYHI-QSCHKFDLSR 119
Query: 547 SDRLA--ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE 604
+ A I++G+ FLHS G L +NILLD+ K++D+G+
Sbjct: 120 ATFYAAEIILGL----QFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMC------- 165
Query: 605 KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGP-IVTG 663
K G+ + C T ++ Q+ D ++FG +L E L+G G
Sbjct: 166 KENMLGDAKTNXF-----CGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHG 220
Query: 664 KGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSR------ 717
+ E L + + R+ +P +E+ ++V K EP R
Sbjct: 221 QDEEELFHSI----------RMDNPFYPRWLEKEAKDLLV----KLFVREPEKRLGVRGD 266
Query: 718 ----PSFEDVLW 725
P F ++ W
Sbjct: 267 IRQHPLFREINW 278
>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyrazolone Inhibitor
Length = 314
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 96/247 (38%), Gaps = 43/247 (17%)
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN---------CPENVL 544
H ++V+LLG C + G + ++ E+ G+ +L PE++
Sbjct: 80 HHLNVVNLLGACTKPG-------GPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLY 132
Query: 545 KWSDRLAILI----GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
K L LI VAK + FL S L NILL E + K+ D+G++ +
Sbjct: 133 KDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDI 189
Query: 601 EEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPI 660
+ KG+ AR ++ + + V + + DV++FG +L E + +
Sbjct: 190 YKDPDYVRKGD---ARLPLKWMAPETIFDRVYTI-------QSDVWSFGVLLWE--IFSL 237
Query: 661 VTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
++E ++G R Q L C EPS RP+F
Sbjct: 238 GASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLD--------CWHGEPSQRPTF 289
Query: 721 EDVLWNL 727
+++ +L
Sbjct: 290 SELVEHL 296
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 157 NVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDM-SALTSL 215
++PD D SN+TVL+L NQL+ P++ R + L + N +S P++ L L
Sbjct: 18 HIPD--DLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLL 75
Query: 216 HVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQ----QFGELAQLQHLDLSFNDLS 271
VL+L+ N+L S + T L +L S +I + F L LDLS N LS
Sbjct: 76 KVLNLQHNEL-SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134
Query: 272 G 272
Sbjct: 135 S 135
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 64/155 (41%), Gaps = 23/155 (14%)
Query: 166 SNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSAL----TSLHVLDLR 221
S+L L L SN LK P I L + ++N +L+ L + TS+ L L
Sbjct: 171 SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLA 230
Query: 222 ENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSL 281
N+L L T S + FSG + L LDLS+N+L + L
Sbjct: 231 NNQL----------LAT---SESTFSGL------KWTNLTQLDLSYNNLHDVGNGSFSYL 271
Query: 282 PNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRV 316
P++ YL L N + P+ S L +S KR
Sbjct: 272 PSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRA 306
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 17/172 (9%)
Query: 116 RLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS 175
+ ++L LD+S N L S L L+ L+++ N P + LSNL LSLK
Sbjct: 246 KWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR 305
Query: 176 NQLK-----GQFPS----SICRIATLTDIAMSNNEL-SGKLPDMSALTSLHVLDLRENKL 225
K P+ S + L + M +N + S K + L SL L L +
Sbjct: 306 AFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFT 365
Query: 226 -------DSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDL 270
++ + L L+T+ L++N S F L QL+ LDL N++
Sbjct: 366 SLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEI 417
>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
pdb|1S9I|B Chain B, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
Length = 354
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 27/171 (15%)
Query: 434 ELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK-KYSIQNLKVR-LDFLS 491
ELK+ ++F+ +S +G G+ G + K + + R L L+ K +I+N +R L L
Sbjct: 12 ELKD--DDFERISELGAGNGGVVTKVQHRPSGLIMARKLIHLEIKPAIRNQIIRELQVLH 69
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDR 549
+ P++V G G ++ + E++ GS L E PE +L
Sbjct: 70 ECNSPYIVGFYGAFYSDG--------EISICMEHMDGGSLDQVLKEAKRIPEEILGKVS- 120
Query: 550 LAILIGVA---KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+A+L G+A + +H V +NIL++ KL D+G+S
Sbjct: 121 IAVLRGLAYLREKHQIMHRDV---------KPSNILVNSRGEIKLCDFGVS 162
>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 635
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 32/173 (18%)
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWS 547
+ + +L +P++V ++G C LV E G +L +N +K
Sbjct: 422 NVMQQLDNPYIVRMIGIC---------EAESWMLVMEMAELGPLNKYLQQN---RHVKDK 469
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIM---EEH 603
+ + ++ V+ + +L S +F +R L N+LL AK+SD+G+S + E +
Sbjct: 470 NIIELVHQVSMGMKYLEES----NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 525
Query: 604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
K + G+ P Y ++ + + DV++FG ++ E+
Sbjct: 526 YKAQTHGKWPVKWY------------APECINYYKFSSKSDVWSFGVLMWEAF 566
>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 95/243 (39%), Gaps = 39/243 (16%)
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL----SENCP-----ENVL 544
H ++V+LLG C + G + ++ E+ G+ +L +E P ++ L
Sbjct: 89 HHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLSTYLRSKRNEFVPYKDLYKDFL 141
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE 604
+ VAK + FL S L NILL E + K+ D+G++ + +
Sbjct: 142 TLEHLIXYSFQVAKGMEFLASR---KXIHRDLAARNILLSEKNVVKIXDFGLARDIYKDP 198
Query: 605 KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGK 664
KG+ AR ++ + + V + + DV++FG +L E + +
Sbjct: 199 DYVRKGD---ARLPLKWMAPETIFDRVYTI-------QSDVWSFGVLLWE--IFSLGASP 246
Query: 665 GEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
++E ++G R Q L C EPS RP+F +++
Sbjct: 247 YPGVKIDEEFXRRLKEGTRMRAPDYTTPEMYQTMLD--------CWHGEPSQRPTFSELV 298
Query: 725 WNL 727
+L
Sbjct: 299 EHL 301
>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 636
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 32/173 (18%)
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWS 547
+ + +L +P++V ++G C LV E G +L +N +K
Sbjct: 423 NVMQQLDNPYIVRMIGIC---------EAESWMLVMEMAELGPLNKYLQQN---RHVKDK 470
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIM---EEH 603
+ + ++ V+ + +L S +F +R L N+LL AK+SD+G+S + E +
Sbjct: 471 NIIELVHQVSMGMKYLEES----NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 526
Query: 604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
K + G+ P Y ++ + + DV++FG ++ E+
Sbjct: 527 YKAQTHGKWPVKWY------------APECINYYKFSSKSDVWSFGVLMWEAF 567
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 23/124 (18%)
Query: 154 FDDNVPDWWDSL--SNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSA 211
+DD + W +L SNL + ++ +N K F LT + ++ N L+ ++
Sbjct: 221 YDDQL---WHALDLSNLQIFNISANIFKYDF---------LTRLYLNGNSLTELPAEIKN 268
Query: 212 LTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLF-----SGAIPQQFGELAQLQHLDLS 266
L++L VLDL N+L S +P L + + + +P +FG L LQ L +
Sbjct: 269 LSNLRVLDLSHNRLTS----LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324
Query: 267 FNDL 270
N L
Sbjct: 325 GNPL 328
>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680
Length = 292
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 415 QAVKLGTQGSPAYRTFYLEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTF 474
Q V + G+P T + ++F+ +G+G G +Y R + ++ + F
Sbjct: 3 QKVMENSSGTPDILTRHF-----TIDDFEIGRPLGKGKFGNVYLAREKKSHFIVALKVLF 57
Query: 475 ---LKKYSIQN-LKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGS 530
++K +++ L+ ++ + L HP+++ L + + +++L+ EY P G
Sbjct: 58 KSQIEKEGVEHQLRREIEIQAHLHHPNILRLYNYFY--------DRRRIYLILEYAPRGE 109
Query: 531 YRAHLSENC 539
L ++C
Sbjct: 110 LYKELQKSC 118
>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
pdb|3SLS|B Chain B, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
Length = 304
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 21/168 (12%)
Query: 434 ELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLK-KYSIQNLKVR-LDFLS 491
ELK+ ++F+ +S +G G+ G ++K + V R L L+ K +I+N +R L L
Sbjct: 21 ELKD--DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLH 78
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDR 549
+ P++V G G ++ + E++ GS L + PE +L
Sbjct: 79 ECNSPYIVGFYGAFYSDG--------EISICMEHMDGGSLDQVLKKAGRIPEQILG---- 126
Query: 550 LAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ I V K + +L + +NIL++ KL D+G+S
Sbjct: 127 -KVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVS 171
>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 95/243 (39%), Gaps = 39/243 (16%)
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHL----SENCP-----ENVL 544
H ++V+LLG C + G + ++ E+ G+ +L +E P ++ L
Sbjct: 89 HHLNVVNLLGACTKPGG-------PLMVIVEFCKFGNLSTYLRSKRNEFVPYKDLYKDFL 141
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE 604
+ VAK + FL S L NILL E + K+ D+G++ + +
Sbjct: 142 TLEHLICYSFQVAKGMEFLASR---KXIHRDLAARNILLSEKNVVKICDFGLARDIYKDP 198
Query: 605 KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLVGPIVTGK 664
KG+ AR ++ + + V + + DV++FG +L E + +
Sbjct: 199 DYVRKGD---ARLPLKWMAPETIFDRVYTI-------QSDVWSFGVLLWE--IFSLGASP 246
Query: 665 GEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSFEDVL 724
++E ++G R Q L C EPS RP+F +++
Sbjct: 247 YPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLD--------CWHGEPSQRPTFSELV 298
Query: 725 WNL 727
+L
Sbjct: 299 EHL 301
>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Jnj- 7706621
pdb|3AMB|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Vx- 680
Length = 351
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 31/181 (17%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK--LYKGRLENGTYVAIRSLTFLKKYSIQ 481
SPA T +L++ F+ + +G GS G+ L K + E G + A++ L K ++
Sbjct: 33 SPAQNTAHLDQ-------FERIRTLGTGSFGRVMLVKHK-ETGNHYAMKILDKQKVVKLK 84
Query: 482 NLKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSEN 538
++ L+ + P LV L E +D+SN +++V EY P G +HL
Sbjct: 85 QIEHTLNEKRIQQAVNFPFLVKL-----EFSFKDNSN---LYMVLEYAPGGEMFSHL--- 133
Query: 539 CPENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
+ ++S+ A + +LHS + L N+L+D+ K++D+G
Sbjct: 134 --RRIGRFSEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLLIDQQGYIKVADFGF 188
Query: 597 S 597
+
Sbjct: 189 A 189
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 209 MSALTSLHVLDLREN---KLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDL 265
S T L L L +N K+D L+ + LS+N + F L +L+ LDL
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354
Query: 266 SFNDLSGIPPSVLFSLPNISYLHLASNML 294
S+N + + LPN+ L L +N L
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELALDTNQL 383
>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor
Kinase
Length = 299
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 39/223 (17%)
Query: 448 MGEGSRGKLYKG------RLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSK------LQH 495
+G+GS G +Y+G + E T VAI+++ +++ R++FL++
Sbjct: 18 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN-----EAASMRERIEFLNEASVMKEFNC 72
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE---NVLKWSDRLAI 552
H+V LLG S ++ E + G +++L PE N + L+
Sbjct: 73 HHVVRLLGVV--------SQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSK 124
Query: 553 LIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGE 611
+I +A + + + + F +R L N ++ E K+ D+G++ + E + G+
Sbjct: 125 MIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIXETDXXRKGGK 184
Query: 612 GPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
G L + S E++ V + DV++FG +L E
Sbjct: 185 ------GLLPVRWMSPESLKDGVFTTYS----DVWSFGVVLWE 217
>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2-
Phenylaminopyrimidines As Potent Inhibitors Of Spleen
Tyrosine Kinase (Syk)
Length = 291
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 32/173 (18%)
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWS 547
+ + +L +P++V ++G C LV E G +L +N +K
Sbjct: 78 NVMQQLDNPYIVRMIGIC---------EAESWMLVMEMAELGPLNKYLQQN---RHVKDK 125
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIM---EEH 603
+ + ++ V+ + +L S +F +R L N+LL AK+SD+G+S + E +
Sbjct: 126 NIIELVHQVSMGMKYLEES----NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 181
Query: 604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
K + G+ P Y ++ + + DV++FG ++ E+
Sbjct: 182 YKAQTHGKWPVKWYA------------PECINYYKFSSKSDVWSFGVLMWEAF 222
>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836
Length = 273
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 32/173 (18%)
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWS 547
+ + +L +P++V ++G C LV E G +L +N +K
Sbjct: 58 NVMQQLDNPYIVRMIGIC---------EAESWMLVMEMAELGPLNKYLQQN---RHVKDK 105
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIM---EEH 603
+ + ++ V+ + +L S +F +R L N+LL AK+SD+G+S + E +
Sbjct: 106 NIIELVHQVSMGMKYLEES----NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 161
Query: 604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
K + G+ P Y ++ + + DV++FG ++ E+
Sbjct: 162 YKAQTHGKWPVKWYA------------PECINYYKFSSKSDVWSFGVLMWEAF 202
>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7-
Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2-
Phenylcyclopropyl)urea
Length = 293
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 32/173 (18%)
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWS 547
+ + +L +P++V ++G C LV E G +L +N +K
Sbjct: 80 NVMQQLDNPYIVRMIGIC---------EAESWMLVMEMAELGPLNKYLQQN---RHVKDK 127
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIM---EEH 603
+ + ++ V+ + +L S +F +R L N+LL AK+SD+G+S + E +
Sbjct: 128 NIIELVHQVSMGMKYLEES----NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 183
Query: 604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
K + G+ P Y ++ + + DV++FG ++ E+
Sbjct: 184 YKAQTHGKWPVKWYA------------PECINYYKFSSKSDVWSFGVLMWEAF 224
>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic
Domain With Pyrazolylbenzimidazole Inhibitor 416
pdb|3VF9|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic
Domain With Thienopyrazolylindole Inhibitor 027
pdb|3TUC|A Chain A, Crystal Structure Of Syk Kinase Domain With
1-Benzyl-N-(5-(6,7-
Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-2-Oxo-1,
2-Dihydropyridine-3- Carboxamide
pdb|3TUD|A Chain A, Crystal Structure Of Syk Kinase Domain With
N-(4-Methyl-3-(8-Methyl-7-
Oxo-2-(Phenylamino)-7,8-Dihydropyrido[2,
3-D]pyrimidin-6-Yl)phenyl)-3- (Trifluoromethyl)benzamide
Length = 299
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 32/173 (18%)
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWS 547
+ + +L +P++V ++G C LV E G +L +N +K
Sbjct: 80 NVMQQLDNPYIVRMIGIC---------EAESWMLVMEMAELGPLNKYLQQN---RHVKDK 127
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIM---EEH 603
+ + ++ V+ + +L S +F +R L N+LL AK+SD+G+S + E +
Sbjct: 128 NIIELVHQVSMGMKYLEES----NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 183
Query: 604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
K + G+ P Y ++ + + DV++FG ++ E+
Sbjct: 184 YKAQTHGKWPVKWYA------------PECINYYKFSSKSDVWSFGVLMWEAF 224
>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In
Complex With A Diaminopyrimidine Carboxamide Inhibitor
Length = 277
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 32/173 (18%)
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWS 547
+ + +L +P++V ++G C LV E G +L +N +K
Sbjct: 64 NVMQQLDNPYIVRMIGIC---------EAESWMLVMEMAELGPLNKYLQQN---RHVKDK 111
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIM---EEH 603
+ + ++ V+ + +L S +F +R L N+LL AK+SD+G+S + E +
Sbjct: 112 NIIELVHQVSMGMKYLEES----NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 167
Query: 604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
K + G+ P Y ++ + + DV++FG ++ E+
Sbjct: 168 YKAQTHGKWPVKWYA------------PECINYYKFSSKSDVWSFGVLMWEAF 208
>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|3F5P|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|E Chain E, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|F Chain F, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|G Chain G, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|H Chain H, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|I Chain I, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|J Chain J, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|K Chain K, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|M Chain M, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|L Chain L, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|R Chain R, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|S Chain S, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|T Chain T, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
Length = 308
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 39/223 (17%)
Query: 448 MGEGSRGKLYKG------RLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSK------LQH 495
+G+GS G +Y+G + E T VAI+++ +++ R++FL++
Sbjct: 27 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN-----EAASMRERIEFLNEASVMKEFNC 81
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPE---NVLKWSDRLAI 552
H+V LLG S ++ E + G +++L PE N + L+
Sbjct: 82 HHVVRLLGVV--------SQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSK 133
Query: 553 LIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGE 611
+I +A + + + + F +R L N ++ E K+ D+G++ + E + G+
Sbjct: 134 MIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIXETDXXRKGGK 193
Query: 612 GPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
G L + S E++ V + DV++FG +L E
Sbjct: 194 ------GLLPVRWMSPESLKDGVFTTYS----DVWSFGVVLWE 226
>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain
pdb|1XBB|A Chain A, Crystal Structure Of The Syk Tyrosine Kinase Domain With
Gleevec
pdb|1XBC|A Chain A, Crystal Structure Of The Syk Tyrosine Kinase Domain With
Staurosporin
pdb|3FQE|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
Ym193306
pdb|3FQH|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
A 2-Substituted 7-Azaindole
pdb|3FQH|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
A 2-Substituted 7-Azaindole
pdb|3FQS|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
R406
pdb|4FL1|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
pdb|4FYN|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
3-(8-{4-
[ethyl-(2-hydroxy-ethyl)-amino]-phenylamino}-imidazo[1,
2-a]pyrazin-5- Yl)-phenol
pdb|4FYO|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
N-{(s)-1-
[7-(3,4-dimethoxy-phenylamino)-thiazolo[5,
4-d]pyrimidin-5-yl]- Pyrrolidin-3-yl}-terephthalamic
Acid
pdb|4FZ6|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
[6-((s)-2-
Methyl-pyrrolidin-1-yl)-pyridin-2-yl]-(6-phenyl-
imidazo[1,2- B]pyridazin-8-yl)-amine
Length = 291
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 32/173 (18%)
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWS 547
+ + +L +P++V ++G C LV E G +L +N +K
Sbjct: 70 NVMQQLDNPYIVRMIGIC---------EAESWMLVMEMAELGPLNKYLQQN---RHVKDK 117
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIM---EEH 603
+ + ++ V+ + +L S +F +R L N+LL AK+SD+G+S + E +
Sbjct: 118 NIIELVHQVSMGMKYLEES----NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 173
Query: 604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
K + G+ P Y ++ + + DV++FG ++ E+
Sbjct: 174 YKAQTHGKWPVKWYA------------PECINYYKFSSKSDVWSFGVLMWEAF 214
>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
A Sulfonamidopyrazine Piperidine Inhibitor
pdb|4DFN|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
An Adamantylpyrazine Inhibitor
Length = 274
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 32/173 (18%)
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWS 547
+ + +L +P++V ++G C LV E G +L +N +K
Sbjct: 60 NVMQQLDNPYIVRMIGIC---------EAESWMLVMEMAELGPLNKYLQQN---RHVKDK 107
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIM---EEH 603
+ + ++ V+ + +L S +F +R L N+LL AK+SD+G+S + E +
Sbjct: 108 NIIELVHQVSMGMKYLEES----NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 163
Query: 604 EKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
K + G+ P Y ++ + + DV++FG ++ E+
Sbjct: 164 YKAQTHGKWPVKWYA------------PECINYYKFSSKSDVWSFGVLMWEAF 204
>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7
pdb|2B9I|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Msg5
pdb|2B9J|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Far1
pdb|2F49|A Chain A, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2F49|B Chain B, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2FA2|A Chain A, Crystal Structure Of Fus3 Without A Peptide From Ste5
pdb|2FA2|B Chain B, Crystal Structure Of Fus3 Without A Peptide From Ste5
Length = 353
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 109/232 (46%), Gaps = 21/232 (9%)
Query: 439 TNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKK--YSIQNLKVRLDFLSKLQH 495
+++F S +GEG+ G + + G VAI+ + K ++++ L+ + L +H
Sbjct: 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLR-EIKILKHFKH 68
Query: 496 PHLVSLLGHCIESGSQDDS--NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAIL 553
+++++ + + DS N N+V+++ E + +R ++ ++ +++ +
Sbjct: 69 ENIITIF-----NIQRPDSFENFNEVYIIQELMQTDLHRVISTQMLSDDHIQY-----FI 118
Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGP 613
+AV LH S + L +N+L++ + K+ D+G++ I++E ++ G
Sbjct: 119 YQTLRAVKVLHGSNV---IHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQ 175
Query: 614 KARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE-SLVGPIVTGK 664
++ R V++ + ++ DV++ G IL E L PI G+
Sbjct: 176 QSGMVEFVATRWYRAPEVMLTSAKYSRAM-DVWSCGCILAELFLRRPIFPGR 226
>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
pdb|2I0E|B Chain B, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
Length = 353
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 21/162 (12%)
Query: 441 NFDSLSFMGEGSRGKLY----KGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHP 496
+F+ L +G+GS GK+ KG E ++ ++ ++ V L+ P
Sbjct: 21 DFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKP 80
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG- 555
++ L C ++ ++++ V EY+ G H+ + V ++ + A+
Sbjct: 81 PFLTQLHSCFQT-------MDRLYFVMEYVNGGDLMYHIQQ-----VGRFKEPHAVFYAA 128
Query: 556 -VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
+A + FL S G L +N++LD K++D+G+
Sbjct: 129 EIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGM 167
>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182
Length = 353
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 109/232 (46%), Gaps = 21/232 (9%)
Query: 439 TNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKK--YSIQNLKVRLDFLSKLQH 495
+++F S +GEG+ G + + G VAI+ + K ++++ L+ + L +H
Sbjct: 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLR-EIKILKHFKH 68
Query: 496 PHLVSLLGHCIESGSQDDS--NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAIL 553
+++++ + + DS N N+V+++ E + +R ++ ++ +++ +
Sbjct: 69 ENIITIF-----NIQRPDSFENFNEVYIIQELMQTDLHRVISTQMLSDDHIQY-----FI 118
Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGP 613
+AV LH S + L +N+L++ + K+ D+G++ I++E ++ G
Sbjct: 119 YQTLRAVKVLHGSNV---IHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQ 175
Query: 614 KARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE-SLVGPIVTGK 664
++ R V++ + ++ DV++ G IL E L PI G+
Sbjct: 176 QSGMTEXVATRWYRAPEVMLTSAKYSRAM-DVWSCGCILAELFLRRPIFPGR 226
>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3
Length = 353
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 109/232 (46%), Gaps = 21/232 (9%)
Query: 439 TNNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKK--YSIQNLKVRLDFLSKLQH 495
+++F S +GEG+ G + + G VAI+ + K ++++ L+ + L +H
Sbjct: 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLR-EIKILKHFKH 68
Query: 496 PHLVSLLGHCIESGSQDDS--NTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAIL 553
+++++ + + DS N N+V+++ E + +R ++ ++ +++ +
Sbjct: 69 ENIITIF-----NIQRPDSFENFNEVYIIQELMQTDLHRVISTQMLSDDHIQY-----FI 118
Query: 554 IGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGP 613
+AV LH S + L +N+L++ + K+ D+G++ I++E ++ G
Sbjct: 119 YQTLRAVKVLHGSNV---IHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQ 175
Query: 614 KARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE-SLVGPIVTGK 664
++ R V++ + ++ DV++ G IL E L PI G+
Sbjct: 176 QSGMTEYVATRWYRAPEVMLTSAKYSRAM-DVWSCGCILAELFLRRPIFPGR 226
>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h-
Purin-6-yl)-benzyl)-amine
pdb|2UVZ|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
C-Phenyl-C-(4-( 9h-Purin-6-Yl)-Phenyl)-Methylamine
pdb|2UW0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 6-(4-(4-(4-
Chloro-Phenyl)-Piperidin-4-Yl)-Phenyl)-9h-Purine
pdb|2UW3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 5-Methyl-4-
Phenyl-1h-Pyrazole
pdb|2UW5|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (R)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (S)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW8|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 2-(4-Chloro-
Phenyl)-2-Phenyl-Ethylamine
pdb|2VNW|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)methanamine
pdb|2VNY|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)amine
pdb|2VO3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
pdb|2VO6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-
Chlorobenzyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Ylamine
Length = 351
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 80/180 (44%), Gaps = 29/180 (16%)
Query: 424 SPAYRTFYLEELKEATNNFDSLSFMGEGSRGK-LYKGRLENGTYVAIRSLTFLKKYSIQN 482
+PA T +L++ F+ + +G GS G+ + +E G + A++ L K ++
Sbjct: 33 NPAQNTAHLDQ-------FERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQ 85
Query: 483 LKVRLD---FLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
++ L+ L + P L L E +D+SN +++V EY P G +HL
Sbjct: 86 IEHTLNEKRILQAVNFPFLTKL-----EFSFKDNSN---LYMVMEYAPGGEMFSHL---- 133
Query: 540 PENVLKWSDRLAILIG--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ ++ + A + +LHS + L N+++D+ K++D+G +
Sbjct: 134 -RRIGRFXEPHARFYAAQIVLTFEYLHSLDL---IYRDLKPENLMIDQQGYIKVTDFGFA 189
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 14/166 (8%)
Query: 137 GISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIA 196
GI L L L + N D P +L+ +T L L N LK S+I + ++ +
Sbjct: 64 GIQYLNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 119
Query: 197 MSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVL---LSRNLFSGAIPQQ 253
+++ +++ P ++ L++L VL L N++ + PL GL + + N + P
Sbjct: 120 LTSTQITDVTP-LAGLSNLQVLYLDLNQITNISPL--AGLTNLQYLSIGNNQVNDLTP-- 174
Query: 254 FGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLP 299
L++L L N +S I P L SLPN+ +HL N +S P
Sbjct: 175 LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP 218
>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
pdb|3OZ6|B Chain B, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
Length = 388
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 442 FDSLSFMGEGSRGKLYKG-RLENGTYVAIRSL--TFLKKYSIQNLKVRLDFLSKLQ-HPH 497
++ + +G+G+ G ++K G VA++ + F Q + L++L H +
Sbjct: 11 YELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHEN 70
Query: 498 LVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
+V+LL +D V+LV++Y+ L N+L+ + ++ +
Sbjct: 71 IVNLLNVLRADNDRD------VYLVFDYM-----ETDLHAVIRANILEPVHKQYVVYQLI 119
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
K + +LHS G + +NILL+ K++D+G+S
Sbjct: 120 KVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLS 156
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 21/162 (12%)
Query: 441 NFDSLSFMGEGSRGKLY----KGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHP 496
+F+ L +G+GS GK+ KG E ++ ++ ++ V L+ P
Sbjct: 342 DFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKP 401
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG- 555
++ L C ++ ++++ V EY+ G H+ + V ++ + A+
Sbjct: 402 PFLTQLHSCFQT-------MDRLYFVMEYVNGGDLMYHI-----QQVGRFKEPHAVFYAA 449
Query: 556 -VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
+A + FL S G L +N++LD K++D+G+
Sbjct: 450 EIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGM 488
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 98/251 (39%), Gaps = 60/251 (23%)
Query: 112 DKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVL 171
+ H S L+ LD+++ L +PSG+ L L+ L + N F++ + +LT L
Sbjct: 272 NTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330
Query: 172 SLKSNQLKGQF----------------------PSSICRI-----ATLTDIAMSNNE-LS 203
S+K N + + S C + + L + +S NE LS
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390
Query: 204 GKLPDMSALTSLHVLDLRENKL---DSGLPLMPKGLVTVL-LSRNLFSGAIPQQFGELAQ 259
K L +LDL +L D+ P L+ VL LS +L + Q F L
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450
Query: 260 LQHLDL---------------------------SFNDLSGIPPSVLFSLPNISYLHLASN 292
LQHL+L SF DLS I SL ++++ L+ N
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510
Query: 293 MLSGTLPKDLS 303
L+ + + LS
Sbjct: 511 RLTSSSIEALS 521
>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide
Substrate Complex: Kinase Substrate Recognition
Length = 277
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 487 LDFLSKLQ-HPHLVSLLGHCIESGSQDDSNTNKVF-LVYEYIPNGSYRAHLSENCPENVL 544
+D L K+ HP+++ L +D TN F LV++ + G +L+E +
Sbjct: 61 VDILRKVSGHPNIIQL---------KDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEK 111
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE 604
+ + L+ V A+H L+ L NILLD+ KL+D+G S ++ E
Sbjct: 112 ETRKIMRALLEVICALHKLNI------VHRDLKPENILLDDDMNIKLTDFGFSCQLDPGE 165
Query: 605 KL 606
KL
Sbjct: 166 KL 167
>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In
Complex With A Diaminopyrimidine Carboxamide Inhibitor
Length = 277
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 73/173 (42%), Gaps = 32/173 (18%)
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWS 547
+ + +L +P++V ++G C LV E G +L +N +K
Sbjct: 64 NVMQQLDNPYIVRMIGIC---------EAESWMLVMEMAELGPLNKYLQQN---RHVKDK 111
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHE-- 604
+ + ++ V+ + +L S +F +R L N+LL AK+SD+G+S + E
Sbjct: 112 NIIELVHQVSMGMKYLEES----NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENX 167
Query: 605 -KLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL 656
K + G+ P Y ++ + + DV++FG ++ E+
Sbjct: 168 YKAQTHGKWPVKWYA------------PECINYYKFSSKSDVWSFGVLMWEAF 208
>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex
pdb|1PKG|B Chain B, Structure Of A C-kit Kinase Product Complex
Length = 329
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKA 615
VAK + FL S L NILL RI K+ D+G++ ++ KG A
Sbjct: 170 VAKGMAFLASK---NCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGN---A 223
Query: 616 RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
R ++ S N V E DV+++G L E
Sbjct: 224 RLPVKWMAPESIFNCVYT-------FESDVWSYGIFLWE 255
>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib
Length = 336
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKA 615
VAK + FL S L NILL RI K+ D+G++ ++ KG A
Sbjct: 177 VAKGMAFLASK---NCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGN---A 230
Query: 616 RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
R ++ S N V E DV+++G L E
Sbjct: 231 RLPVKWMAPESIFNCVYT-------FESDVWSYGIFLWE 262
>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C-kit Tyrosine Kinase
Length = 313
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKA 615
VAK + FL S L NILL RI K+ D+G++ ++ KG A
Sbjct: 154 VAKGMAFLASK---NCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGN---A 207
Query: 616 RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
R ++ S N V E DV+++G L E
Sbjct: 208 RLPVKWMAPESIFNCVYT-------FESDVWSYGIFLWE 239
>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
pdb|3G0F|B Chain B, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
Length = 336
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKA 615
VAK + FL S L NILL RI K+ D+G++ ++ KG A
Sbjct: 177 VAKGMAFLASK---NCIHRDLAARNILLTHGRITKICDFGLARHIKNDSNYVVKGN---A 230
Query: 616 RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
R ++ S N V E DV+++G L E
Sbjct: 231 RLPVKWMAPESIFNCVYT-------FESDVWSYGIFLWE 262
>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By
Mutational Studies
Length = 298
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 487 LDFLSKLQ-HPHLVSLLGHCIESGSQDDSNTNKVF-LVYEYIPNGSYRAHLSENCPENVL 544
+D L K+ HP+++ L +D TN F LV++ + G +L+E +
Sbjct: 74 VDILRKVSGHPNIIQL---------KDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEK 124
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE 604
+ + L+ V A+H L+ L NILLD+ KL+D+G S ++ E
Sbjct: 125 ETRKIMRALLEVICALHKLNI------VHRDLKPENILLDDDMNIKLTDFGFSCQLDPGE 178
Query: 605 KLEA 608
KL +
Sbjct: 179 KLRS 182
>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C- Kit Tyrosine Kinase
Length = 331
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKA 615
VAK + FL S L NILL RI K+ D+G++ ++ KG A
Sbjct: 172 VAKGMAFLASK---NCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGN---A 225
Query: 616 RYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLE 654
R ++ S N V E DV+++G L E
Sbjct: 226 RLPVKWMAPESIFNCVYT-------FESDVWSYGIFLWE 257
>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase,
Kinase: An Active Protein Kinase Complexed With
Nucleotide, Substrate-Analogue And Product
Length = 298
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 487 LDFLSKLQ-HPHLVSLLGHCIESGSQDDSNTNKVF-LVYEYIPNGSYRAHLSENCPENVL 544
+D L K+ HP+++ L +D TN F LV++ + G +L+E +
Sbjct: 74 VDILRKVSGHPNIIQL---------KDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEK 124
Query: 545 KWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHE 604
+ + L+ V A+H L+ L NILLD+ KL+D+G S ++ E
Sbjct: 125 ETRKIMRALLEVICALHKLNI------VHRDLKPENILLDDDMNIKLTDFGFSCQLDPGE 178
Query: 605 KL 606
KL
Sbjct: 179 KL 180
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%)
Query: 234 KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNM 293
K L + LS N S Q F + QL L LS+N L IPP L ++ L L N
Sbjct: 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND 113
Query: 294 LS 295
+S
Sbjct: 114 IS 115
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%)
Query: 110 LPDKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLT 169
+P ++ L L+D+S+N + S + +L TL + N P +D L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 170 VLSLKSNQLKGQFPSSICRIATLTDIAMSNNEL 202
+LSL N + + ++ L+ +A+ N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1
Reveals A Novel Autoinhibitory Conformation For A Dual
Kinase Protein
Length = 355
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 29/174 (16%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKGRLENGTYVA-IRSLTFLKKYSI-------QNLKVRL 487
K NF+ L +G G+ GK++ R +G + ++ LKK +I ++ +
Sbjct: 50 KVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTER 109
Query: 488 DFLSKL-QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS--ENCPENVL 544
L + Q P LV+L Q ++ K+ L+ +YI G HLS E E+
Sbjct: 110 QVLEHIRQSPFLVTL-----HYAFQTET---KLHLILDYINGGELFTHLSQRERFTEH-- 159
Query: 545 KWSDRLAILIG-VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ I +G + A+ LH G + NILLD + L+D+G+S
Sbjct: 160 ----EVQIYVGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVLTDFGLS 206
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 14/166 (8%)
Query: 137 GISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIATLTDIA 196
G+ L L L + N D P +L+ +T L L N LK S+I + ++ +
Sbjct: 58 GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113
Query: 197 MSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVL---LSRNLFSGAIPQQ 253
+++ +++ P ++ L++L VL L N++ + PL GL + + S P
Sbjct: 114 LTSTQITDVTP-LAGLSNLQVLYLDLNQITNISPL--AGLTNLQYLSIGNAQVSDLTP-- 168
Query: 254 FGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLP 299
L++L L N +S I P L SLPN+ +HL +N +S P
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 439 TNNFDSLSFMGEGSRG--KLYKGRLENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQH 495
++D + +GEG+ G +L R+ VA++ + + +N+K + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEIXINKMLNH 63
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
++V GH E Q +L EY G + P+ + D
Sbjct: 64 ENVVKFYGHRREGNIQ--------YLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ V +LH I+ + N+LLDE K+SD+G++ +
Sbjct: 113 LMAGVVYLHGIGIT---HRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue
pdb|2PMN|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp-Site
Inhibitor
pdb|2PMO|X Chain X, Crystal Structure Of Pfpk7 In Complex With Hymenialdisine
Length = 348
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 24/118 (20%)
Query: 514 SNTNKVFLVYEYIPNGS------YRAHLSEN----CPENVLKWSDRLAILIGVAKAVHFL 563
+N ++V+++YEY+ N S Y L +N P V+K I+ V + ++
Sbjct: 113 TNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIK-----CIIKSVLNSFSYI 167
Query: 564 HSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFL 620
H+ + +R + +NIL+D++ KLSD+G S M ++ K +G + Y F+
Sbjct: 168 HNE---KNICHRDVKPSNILMDKNGRVKLSDFGESEYM-----VDKKIKGSRGTYEFM 217
>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
pdb|1Y6B|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
Length = 366
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 27/196 (13%)
Query: 536 SENCPENVLKWSDRLAILI----GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL 591
E PE++ K L LI VAK + FL S L NILL E + K+
Sbjct: 183 EEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKI 239
Query: 592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFI 651
D+G++ + + KG+ AR ++ + + V + + DV++FG +
Sbjct: 240 CDFGLARDIYKDPDYVRKGD---ARLPLKWMAPETIFDRVYTI-------QSDVWSFGVL 289
Query: 652 LLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCIC 711
L E + + ++E ++G R Q L C
Sbjct: 290 LWE--IFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLD--------CWH 339
Query: 712 PEPSSRPSFEDVLWNL 727
EPS RP+F +++ +L
Sbjct: 340 GEPSQRPTFSELVEHL 355
>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A
Pyrrolo-Pyridine Inhibitor
Length = 273
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 18/165 (10%)
Query: 439 TNNFDSLSFMGEGSRG--KLYKGRLENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQH 495
++D + +GEG+ G +L R+ VA++ + + +N+K + + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINAMLNH 64
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
++V GH E Q +L EY G + P+ + D
Sbjct: 65 ENVVKFYGHRREGNIQ--------YLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 113
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ V +LH I+ + N+LLDE K+SD+G++ +
Sbjct: 114 LMAGVVYLHGIGIT---HRDIKPENLLLDERDNLKISDFGLATVF 155
>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate
Peptide And Inhibitor
pdb|3CQW|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate
Peptide And Inhibitor
pdb|3MV5|A Chain A, Crystal Structure Of Akt-1-Inhibitor Complexes
pdb|3MVH|A Chain A, Crystal Structure Of Akt-1-Inhibitor Complexes
Length = 342
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 23/164 (14%)
Query: 440 NNFDSLSFMGEGSRGK--LYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQ 494
N F+ L +G+G+ GK L K + G Y A++ L + K + + L +
Sbjct: 10 NEFEYLKLLGKGTFGKVILVKEKA-TGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSR 68
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
HP L +L +++ V EY G HLS E V +S+ A
Sbjct: 69 HPFLTAL--------KYSFQTHDRLCFVMEYANGGELFFHLSR---ERV--FSEDRARFY 115
Query: 555 G--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
G + A+ +LHS L N++LD+ K++D+G+
Sbjct: 116 GAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGL 157
>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Back Pocket Binder
Length = 368
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 27/196 (13%)
Query: 536 SENCPENVLKWSDRLAILI----GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL 591
E PE++ K L LI VAK + FL S L NILL E + K+
Sbjct: 185 EEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKI 241
Query: 592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFI 651
D+G++ + + KG+ AR ++ + + V + + DV++FG +
Sbjct: 242 CDFGLARDIYKDPDYVRKGD---ARLPLKWMAPETIFDRVYTI-------QSDVWSFGVL 291
Query: 652 LLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCIC 711
L E + + ++E ++G R Q L C
Sbjct: 292 LWE--IFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLD--------CWH 341
Query: 712 PEPSSRPSFEDVLWNL 727
EPS RP+F +++ +L
Sbjct: 342 GEPSQRPTFSELVEHL 357
>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric
Inhibitor
Length = 446
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 23/164 (14%)
Query: 440 NNFDSLSFMGEGSRGK--LYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQ 494
N F+ L +G+G+ GK L K + G Y A++ L + K + + L +
Sbjct: 151 NEFEYLKLLGKGTFGKVILVKEKA-TGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSR 209
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
HP L +L +++ V EY G HLS E V S+ A
Sbjct: 210 HPFLTAL--------KYSFQTHDRLCFVMEYANGGELFFHLSR---ERVF--SEDRARFY 256
Query: 555 G--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
G + A+ +LHS L N++LD+ K++D+G+
Sbjct: 257 GAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGL 298
>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 439 TNNFDSLSFMGEGSRG--KLYKGRLENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQH 495
++D + +GEG+ G +L R+ VA++ + + +N+K + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEIXINKMLNH 63
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
++V GH E Q +L EY G + P+ + D
Sbjct: 64 ENVVKFYGHRREGNIQ--------YLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ V +LH I+ + N+LLDE K+SD+G++ +
Sbjct: 113 LMAGVVYLHGIGIT---HRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
pdb|2YDJ|B Chain B, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 439 TNNFDSLSFMGEGSRG--KLYKGRLENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQH 495
++D + +GEG+ G +L R+ VA++ + + +N+K + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEIXINKMLNH 64
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
++V GH E Q +L EY G + P+ + D
Sbjct: 65 ENVVKFYGHRREGNIQ--------YLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 113
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ V +LH I+ + N+LLDE K+SD+G++ +
Sbjct: 114 LMAGVVYLHGIGIT---HRDIKPENLLLDERDNLKISDFGLATVF 155
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 22/174 (12%)
Query: 117 LSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSN 176
+ L+ LD+++ L G +PSG+ L L+ L + N FD + +LT L ++ N
Sbjct: 274 FTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN 332
Query: 177 QLKGQF-PSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKG 235
K + ++ L + +S+N++ + S SL + +L
Sbjct: 333 VKKLHLGVGCLEKLGNLQTLDLSHNDI-----EASDCCSLQLKNLSH------------- 374
Query: 236 LVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHL 289
L T+ LS N G Q F E QL+ LDL+F L P F N+ +L +
Sbjct: 375 LQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQ--NLHFLQV 426
>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex
With N-(4-
(5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h-
Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide
Length = 446
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 23/164 (14%)
Query: 440 NNFDSLSFMGEGSRGK--LYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQ 494
N F+ L +G+G+ GK L K + G Y A++ L + K + + L +
Sbjct: 148 NEFEYLKLLGKGTFGKVILVKEKA-TGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSR 206
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
HP L +L +++ V EY G HLS E V S+ A
Sbjct: 207 HPFLTAL--------KYSFQTHDRLCFVMEYANGGELFFHLSR---ERVF--SEDRARFY 253
Query: 555 G--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
G + A+ +LHS L N++LD+ K++D+G+
Sbjct: 254 GAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGL 295
>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor
pdb|3OCB|B Chain B, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor
pdb|3OW4|A Chain A, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|3OW4|B Chain B, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|3QKK|A Chain A, Spirochromane Akt Inhibitors
pdb|3QKL|A Chain A, Spirochromane Akt Inhibitors
pdb|3QKM|A Chain A, Spirocyclic Sulfonamides As Akt Inhibitors
pdb|4EKK|A Chain A, Akt1 With Amp-Pnp
pdb|4EKK|B Chain B, Akt1 With Amp-Pnp
pdb|4EKL|A Chain A, Akt1 With Gdc0068
Length = 341
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 23/164 (14%)
Query: 440 NNFDSLSFMGEGSRGK--LYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQ 494
N F+ L +G+G+ GK L K + G Y A++ L + K + + L +
Sbjct: 9 NEFEYLKLLGKGTFGKVILVKEKA-TGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSR 67
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
HP L +L +++ V EY G HLS E V +S+ A
Sbjct: 68 HPFLTAL--------KYSFQTHDRLCFVMEYANGGELFFHLSR---ERV--FSEDRARFY 114
Query: 555 G--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
G + A+ +LHS L N++LD+ K++D+G+
Sbjct: 115 GAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGL 156
>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363
Length = 340
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 23/164 (14%)
Query: 440 NNFDSLSFMGEGSRGK--LYKGRLENGTYVAIRSL---TFLKKYSIQNLKVRLDFLSKLQ 494
N F+ L +G+G+ GK L K + G Y A++ L + K + + L +
Sbjct: 8 NEFEYLKLLGKGTFGKVILVKEKA-TGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSR 66
Query: 495 HPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILI 554
HP L +L +++ V EY G HLS E V +S+ A
Sbjct: 67 HPFLTAL--------KYSFQTHDRLCFVMEYANGGELFFHLSR---ERV--FSEDRARFY 113
Query: 555 G--VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGI 596
G + A+ +LHS L N++LD+ K++D+G+
Sbjct: 114 GAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGL 155
>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With
Compound A
Length = 356
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 27/196 (13%)
Query: 536 SENCPENVLKWSDRLAILI----GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL 591
E PE++ K L LI VAK + FL S L NILL E + K+
Sbjct: 176 EEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKI 232
Query: 592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFI 651
D+G++ + + KG+ AR ++ + + V + + DV++FG +
Sbjct: 233 CDFGLARDIYKDPDYVRKGD---ARLPLKWMAPETIFDRVYTI-------QSDVWSFGVL 282
Query: 652 LLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCIC 711
L E + + ++E ++G R Q L C
Sbjct: 283 LWE--IFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLD--------CWH 332
Query: 712 PEPSSRPSFEDVLWNL 727
EPS RP+F +++ +L
Sbjct: 333 GEPSQRPTFSELVEHL 348
>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A
Novel Pyrrolopyrimidine Inhibitor
Length = 359
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 27/196 (13%)
Query: 536 SENCPENVLKWSDRLAILI----GVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKL 591
E PE++ K L LI VAK + FL S L NILL E + K+
Sbjct: 178 EEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKI 234
Query: 592 SDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFI 651
D+G++ + + KG+ AR ++ + + V + + DV++FG +
Sbjct: 235 CDFGLARDIYKDPDYVRKGD---ARLPLKWMAPETIFDRVYTI-------QSDVWSFGVL 284
Query: 652 LLESLVGPIVTGKGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCIC 711
L E + + ++E ++G R Q L C
Sbjct: 285 LWE--IFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLD--------CWH 334
Query: 712 PEPSSRPSFEDVLWNL 727
EPS RP+F +++ +L
Sbjct: 335 GEPSQRPTFSELVEHL 350
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 7/187 (3%)
Query: 112 DKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVL 171
D L L L + +N + S L +LQ L + N + P+ SL L +
Sbjct: 72 DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRI- 130
Query: 172 SLKSNQLKGQFPSSICRIATLTDIAMSNNEL--SGKLPDMSALTSLHVLDLRENKLDSGL 229
N+++ + + I M N L SG P L+ L + E KL +G+
Sbjct: 131 --HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL-TGI 187
Query: 230 PL-MPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLH 288
P +P+ L + L N + ++L L L N + I L LP + LH
Sbjct: 188 PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247
Query: 289 LASNMLS 295
L +N LS
Sbjct: 248 LDNNKLS 254
>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRB|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRG|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRH|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRM|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRN|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRO|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2C3J|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3K|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3L|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2CGU|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGV|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGW|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGX|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|3NLB|A Chain A, Novel Kinase Profile Highlights The Temporal Basis Of
Context Dependent Checkpoint Pathways To Cell Death
Length = 297
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 439 TNNFDSLSFMGEGSRG--KLYKGRLENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQH 495
++D + +GEG+ G +L R+ VA++ + + +N+K + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
++V GH E Q +L EY G + P+ + D
Sbjct: 65 ENVVKFYGHRREGNIQ--------YLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 113
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ V +LH I+ + N+LLDE K+SD+G++ +
Sbjct: 114 LMAGVVYLHGIGIT---HRDIKPENLLLDERDNLKISDFGLATVF 155
>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint
Kinase Chk1
pdb|1NVQ|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1UCN-01
pdb|1NVR|A Chain A, The Complex Structure Of Checkpoint Kinase
Chk1STAUROSPORINE
pdb|1NVS|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1SB218078
pdb|2WMQ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMR|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMS|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMT|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMU|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMV|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMX|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMW|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEY|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XF0|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEZ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2X8D|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2X8I|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YM3|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM4|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM5|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM6|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM7|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM8|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YDI|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 289
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 439 TNNFDSLSFMGEGSRG--KLYKGRLENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQH 495
++D + +GEG+ G +L R+ VA++ + + +N+K + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
++V GH E Q +L EY G + P+ + D
Sbjct: 65 ENVVKFYGHRREGNIQ--------YLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 113
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ V +LH I+ + N+LLDE K+SD+G++ +
Sbjct: 114 LMAGVVYLHGIGIT---HRDIKPENLLLDERDNLKISDFGLATVF 155
>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine
Analog
pdb|2GDO|A Chain A, 4-(aminoalkylamino)-3-benzimidazole-quinolinones As Potent
Chk1 Inhibitors
Length = 295
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 439 TNNFDSLSFMGEGSRG--KLYKGRLENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQH 495
++D + +GEG+ G +L R+ VA++ + + +N+K + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
++V GH E Q +L EY G + P+ + D
Sbjct: 65 ENVVKFYGHRREGNIQ--------YLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 113
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ V +LH I+ + N+LLDE K+SD+G++ +
Sbjct: 114 LMAGVVYLHGIGIT---HRDIKPENLLLDERDNLKISDFGLATVF 155
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 118 SSLELLDMSSNFLFGAIPSGISRLVRLQTLTM---DTNFFDDNVPDWWDSLSNLTVLSLK 174
S ++ D+S + +F + S S L+ LT+ + N DDN +W L++L L+L
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA--FW-GLTHLKELALD 331
Query: 175 SNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALT 213
+NQLK R+ +L I + N P + L+
Sbjct: 332 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 370
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 118/297 (39%), Gaps = 68/297 (22%)
Query: 445 LSFMGEGSRGKLYKGRLE--NGTYVAIRSLTFLKKYSIQNLKVRLDFLSK------LQHP 496
L +G+GS G + +G + +G V++ ++ LK + + DF+ + L H
Sbjct: 17 LEKLGDGSFGVVRRGEWDAPSGKTVSV-AVKCLKPDVLSQPEAMDDFIREVNAMHSLDHR 75
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGV 556
+L+ L G + T + +V E P GS L ++ +L R A+ V
Sbjct: 76 NLIRLYGVVL---------TPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAV--QV 124
Query: 557 AKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGI---------SIIMEEHEKL 606
A+ + +L S F +R L N+LL + K+ D+G+ +M+EH K+
Sbjct: 125 AEGMGYLESK----RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKV 180
Query: 607 EAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV---GPIVTG 663
P++ RT + D + FG L E P +
Sbjct: 181 PFAWCAPES-----LKTRTFSH-------------ASDTWMFGVTLWEMFTYGQEPWIGL 222
Query: 664 KGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
G +L+++ G R+ P C Q+ +++V +C +P RP+F
Sbjct: 223 NGSQ-ILHKIDKEGE-----RLPRP---EDCPQDIYNVMV----QCWAHKPEDRPTF 266
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 26/174 (14%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-----RLDFLSKL 493
+F +GEGS + R L AI+ L K++ I+ KV D +S+L
Sbjct: 37 EDFKFGKILGEGSFSTVVLARELATSREYAIKILE--KRHIIKENKVPYVTRERDVMSRL 94
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLA 551
HP V L C QDD K++ Y NG ++ + + E ++
Sbjct: 95 DHPFFVKLY-FCF----QDD---EKLYFGLSYAKNGELLKYIRKIGSFDETCTRF----- 141
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ A+ +LH G L NILL+E +++D+G + ++ K
Sbjct: 142 YTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 192
>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YER|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YEX|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YDK|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 439 TNNFDSLSFMGEGSRG--KLYKGRLENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQH 495
++D + +GEG+ G +L R+ VA++ + + +N+K + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
++V GH E Q +L EY G + P+ + D
Sbjct: 65 ENVVKFYGHRREGNIQ--------YLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 113
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ V +LH I+ + N+LLDE K+SD+G++ +
Sbjct: 114 LMAGVVYLHGIGIT---HRDIKPENLLLDERDNLKISDFGLATVF 155
>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 439 TNNFDSLSFMGEGSRG--KLYKGRLENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQH 495
++D + +GEG+ G +L R+ VA++ + + +N+K + L H
Sbjct: 5 VEDWDLVQTLGEGAAGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
++V GH E Q +L EY G + P+ + D
Sbjct: 64 ENVVKFYGHRREGNIQ--------YLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ V +LH I+ + N+LLDE K+SD+G++ +
Sbjct: 113 LMAGVVYLHGIGIT---HRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54
pdb|2QHM|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2a
pdb|2QHN|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1a
pdb|3TKH|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S01
pdb|3TKI|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S25
Length = 323
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 439 TNNFDSLSFMGEGSRG--KLYKGRLENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQH 495
++D + +GEG+ G +L R+ VA++ + + +N+K + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
++V GH E Q +L EY G + P+ + D
Sbjct: 65 ENVVKFYGHRREGNIQ--------YLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 113
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ V +LH I+ + N+LLDE K+SD+G++ +
Sbjct: 114 LMAGVVYLHGIGIT---HRDIKPENLLLDERDNLKISDFGLATVF 155
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 49/193 (25%)
Query: 117 LSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDD-----NVPDWWDSLSNLTVL 171
+ LELL++SSN L+ + + L L+TL ++ N+ + ++ + +N++ +
Sbjct: 57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV 114
Query: 172 SLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPL 231
S Q K + +I L D+ D + + LDL+ N++D
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDL------------DEGCRSRVQYLDLKLNEID----- 157
Query: 232 MPKGLVTVLLSRNLFSGAIPQQFGELAQ----LQHLDLSFNDLSGIPPSVLFSLPNISYL 287
TV F ELA L+HL+L +N + + V+F+ + L
Sbjct: 158 ------TV-------------NFAELAASSDTLEHLNLQYNFIYDVKGQVVFA--KLKTL 196
Query: 288 HLASNMLSGTLPK 300
L+SN L+ P+
Sbjct: 197 DLSSNKLAFMGPE 209
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 168 LTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLD 226
+T + L+ N +K P + L I +SNN++S PD L SL+ L L NK+
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 227 SGLPLMPKGLV-------TVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLF 279
+PK L +LL+ N + F +L L L L N L I
Sbjct: 94 E----LPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149
Query: 280 SLPNISYLHLASN 292
L I +HLA N
Sbjct: 150 PLRAIQTMHLAQN 162
>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human
Chk1 Kinase Domain
pdb|3OT8|A Chain A, X-Ray Crystal Structure Of Compound 17r Bound To Human
Chk1 Kinase Domain
pdb|3PA3|A Chain A, X-Ray Crystal Structure Of Compound 70 Bound To Human Chk1
Kinase Domain
pdb|3PA4|A Chain A, X-Ray Crystal Structure Of Compound 2a Bound To Human Chk1
Kinase Domain
pdb|3PA5|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
pdb|3U9N|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
Length = 273
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 439 TNNFDSLSFMGEGSRG--KLYKGRLENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQH 495
++D + +GEG+ G +L R+ VA++ + + +N+K + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
++V GH E Q +L EY G + P+ + D
Sbjct: 64 ENVVKFYGHRREGNIQ--------YLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ V +LH I+ + N+LLDE K+SD+G++ +
Sbjct: 113 LMAGVVYLHGIGIT---HRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20
pdb|2HXL|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1
pdb|2HXQ|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2
pdb|2HY0|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 22
pdb|3F9N|A Chain A, Crystal Structure Of Chk1 Kinase In Complex With Inhibitor
38
Length = 322
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 439 TNNFDSLSFMGEGSRG--KLYKGRLENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQH 495
++D + +GEG+ G +L R+ VA++ + + +N+K + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
++V GH E Q +L EY G + P+ + D
Sbjct: 64 ENVVKFYGHRREGNIQ--------YLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ V +LH I+ + N+LLDE K+SD+G++ +
Sbjct: 113 LMAGVVYLHGIGIT---HRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017
pdb|2E9V|B Chain B, Structure Of H-Chk1 Complexed With A859017
Length = 268
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 439 TNNFDSLSFMGEGSRG--KLYKGRLENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQH 495
++D + +GEG+ G +L R+ VA++ + + +N+K + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
++V GH E Q +L EY G + P+ + D
Sbjct: 64 ENVVKFYGHRREGNIQ--------YLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ V +LH I+ + N+LLDE K+SD+G++ +
Sbjct: 113 LMAGVVYLHGIGIT---HRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 168 LTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPD-MSALTSLHVLDLRENKLD 226
+T + L+ N +K P + L I +SNN++S PD L SL+ L L NK+
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 227 SGLPLMPKGLV-------TVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLF 279
+PK L +LL+ N + F +L L L L N L I
Sbjct: 94 E----LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149
Query: 280 SLPNISYLHLASN 292
L I +HLA N
Sbjct: 150 PLRAIQTMHLAQN 162
>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
pdb|3JVS|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
Length = 271
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 439 TNNFDSLSFMGEGSRG--KLYKGRLENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQH 495
++D + +GEG+ G +L R+ VA++ + + +N+K + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
++V GH E Q +L EY G + P+ + D
Sbjct: 64 ENVVKFYGHRREGNIQ--------YLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ V +LH I+ + N+LLDE K+SD+G++ +
Sbjct: 113 LMAGVVYLHGIGIT---HRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95
pdb|3EQP|A Chain A, Crystal Structure Of Ack1 With Compound T95
pdb|3EQR|A Chain A, Crystal Structure Of Ack1 With Compound T74
pdb|3EQR|B Chain B, Crystal Structure Of Ack1 With Compound T74
Length = 276
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 118/297 (39%), Gaps = 68/297 (22%)
Query: 445 LSFMGEGSRGKLYKGRLE--NGTYVAIRSLTFLKKYSIQNLKVRLDFLSK------LQHP 496
L +G+GS G + +G + +G V++ ++ LK + + DF+ + L H
Sbjct: 13 LEKLGDGSFGVVRRGEWDAPSGKTVSV-AVKCLKPDVLSQPEAMDDFIREVNAMHSLDHR 71
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGV 556
+L+ L G + T + +V E P GS L ++ +L R A+ V
Sbjct: 72 NLIRLYGVVL---------TPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAV--QV 120
Query: 557 AKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGI---------SIIMEEHEKL 606
A+ + +L S F +R L N+LL + K+ D+G+ +M+EH K+
Sbjct: 121 AEGMGYLESK----RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKV 176
Query: 607 EAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV---GPIVTG 663
P++ RT + D + FG L E P +
Sbjct: 177 PFAWCAPES-----LKTRTFSH-------------ASDTWMFGVTLWEMFTYGQEPWIGL 218
Query: 664 KGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
G +L+++ G R+ P C Q+ +++V +C +P RP+F
Sbjct: 219 NGSQ-ILHKIDKEGE-----RLPRP---EDCPQDIYNVMV----QCWAHKPEDRPTF 262
>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor
Length = 269
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 439 TNNFDSLSFMGEGSRG--KLYKGRLENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQH 495
++D + +GEG+ G +L R+ VA++ + + +N+K + L H
Sbjct: 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 64
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
++V GH E Q +L EY G + P+ + D
Sbjct: 65 ENVVKFYGHRREGNIQ--------YLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 113
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ V +LH I+ + N+LLDE K+SD+G++ +
Sbjct: 114 LMAGVVYLHGIGIT---HRDIKPENLLLDERDNLKISDFGLATVF 155
>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994
pdb|2YWP|A Chain A, Crystal Structure Of Chk1 With A Urea Inhibitor
pdb|2E9N|A Chain A, Structure Of H-chk1 Complexed With A767085
pdb|2E9O|A Chain A, Structure Of H-Chk1 Complexed With Aa582939
pdb|2E9P|A Chain A, Structure Of H-Chk1 Complexed With A771129
pdb|2E9U|A Chain A, Structure Of H-Chk1 Complexed With A780125
Length = 269
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 439 TNNFDSLSFMGEGSRG--KLYKGRLENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQH 495
++D + +GEG+ G +L R+ VA++ + + +N+K + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
++V GH E Q +L EY G + P+ + D
Sbjct: 64 ENVVKFYGHRREGNIQ--------YLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ V +LH I+ + N+LLDE K+SD+G++ +
Sbjct: 113 LMAGVVYLHGIGIT---HRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1
pdb|4FSQ|A Chain A, Crystal Structure Of The Chk1
pdb|4FSR|A Chain A, Crystal Structure Of The Chk1
pdb|4FT0|A Chain A, Crystal Structure Of The Chk1
pdb|4FT5|A Chain A, Crystal Structure Of The Chk1
pdb|4FT7|A Chain A, Crystal Structure Of The Chk1
pdb|4FT9|A Chain A, Crystal Structure Of The Chk1
pdb|4FTI|A Chain A, Crystal Structure Of The Chk1
pdb|4FTJ|A Chain A, Crystal Structure Of The Chk1
pdb|4FTK|A Chain A, Crystal Structure Of The Chk1
pdb|4FTL|A Chain A, Crystal Structure Of The Chk1
pdb|4FTM|A Chain A, Crystal Structure Of The Chk1
pdb|4FTO|A Chain A, Crystal Structure Of The Chk1
pdb|4FTR|A Chain A, Crystal Structure Of The Chk1
pdb|4FTT|A Chain A, Crystal Structure Of The Chk1
pdb|4FTU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 439 TNNFDSLSFMGEGSRG--KLYKGRLENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQH 495
++D + +GEG+ G +L R+ VA++ + + +N+K + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
++V GH E Q +L EY G + P+ + D
Sbjct: 64 ENVVKFYGHRREGNIQ--------YLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ V +LH I+ + N+LLDE K+SD+G++ +
Sbjct: 113 LMAGVVYLHGIGIT---HRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1
Length = 278
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 439 TNNFDSLSFMGEGSRG--KLYKGRLENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQH 495
++D + +GEG+ G +L R+ VA++ + + +N+K + L H
Sbjct: 4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 62
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
++V GH E Q +L EY G + P+ + D
Sbjct: 63 ENVVKFYGHRREGNIQ--------YLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 111
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ V +LH I+ + N+LLDE K+SD+G++ +
Sbjct: 112 LMAGVVYLHGIGIT---HRDIKPENLLLDERDNLKISDFGLATVF 153
>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 118/297 (39%), Gaps = 68/297 (22%)
Query: 445 LSFMGEGSRGKLYKGRLE--NGTYVAIRSLTFLKKYSIQNLKVRLDFLSK------LQHP 496
L +G+GS G + +G + +G V++ ++ LK + + DF+ + L H
Sbjct: 23 LEKLGDGSFGVVRRGEWDAPSGKTVSV-AVKCLKPDVLSQPEAMDDFIREVNAMHSLDHR 81
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGV 556
+L+ L G + T + +V E P GS L ++ +L R A+ V
Sbjct: 82 NLIRLYGVVL---------TPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAV--QV 130
Query: 557 AKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGI---------SIIMEEHEKL 606
A+ + +L S F +R L N+LL + K+ D+G+ +M+EH K+
Sbjct: 131 AEGMGYLESK----RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHXVMQEHRKV 186
Query: 607 EAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV---GPIVTG 663
P++ RT + D + FG L E P +
Sbjct: 187 PFAWCAPES-----LKTRTFSH-------------ASDTWMFGVTLWEMFTYGQEPWIGL 228
Query: 664 KGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
G +L+++ G R+ P C Q+ +++V +C +P RP+F
Sbjct: 229 NGSQ-ILHKIDKEGE-----RLPRP---EDCPQDIYNVMV----QCWAHKPEDRPTF 272
>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor
pdb|4EWH|A Chain A, Co-Crystal Structure Of Ack1 With Inhibitor
Length = 275
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 118/297 (39%), Gaps = 68/297 (22%)
Query: 445 LSFMGEGSRGKLYKGRLE--NGTYVAIRSLTFLKKYSIQNLKVRLDFLSK------LQHP 496
L +G+GS G + +G + +G V++ ++ LK + + DF+ + L H
Sbjct: 13 LEKLGDGSFGVVRRGEWDAPSGKTVSV-AVKCLKPDVLSQPEAMDDFIREVNAMHSLDHR 71
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGV 556
+L+ L G + T + +V E P GS L ++ +L R A+ V
Sbjct: 72 NLIRLYGVVL---------TPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAV--QV 120
Query: 557 AKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGI---------SIIMEEHEKL 606
A+ + +L S F +R L N+LL + K+ D+G+ +M+EH K+
Sbjct: 121 AEGMGYLESK----RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHXVMQEHRKV 176
Query: 607 EAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV---GPIVTG 663
P++ RT + D + FG L E P +
Sbjct: 177 PFAWCAPES-----LKTRTFSH-------------ASDTWMFGVTLWEMFTYGQEPWIGL 218
Query: 664 KGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
G +L+++ G R+ P C Q+ +++V +C +P RP+F
Sbjct: 219 NGSQ-ILHKIDKEGE-----RLPRP---EDCPQDIYNVMV----QCWAHKPEDRPTF 262
>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U46|B Chain B, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U4D|A Chain A, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U4D|B Chain B, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U54|B Chain B, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 118/297 (39%), Gaps = 68/297 (22%)
Query: 445 LSFMGEGSRGKLYKGRLE--NGTYVAIRSLTFLKKYSIQNLKVRLDFLSK------LQHP 496
L +G+GS G + +G + +G V++ ++ LK + + DF+ + L H
Sbjct: 23 LEKLGDGSFGVVRRGEWDAPSGKTVSV-AVKCLKPDVLSQPEAMDDFIREVNAMHSLDHR 81
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGV 556
+L+ L G + T + +V E P GS L ++ +L R A+ V
Sbjct: 82 NLIRLYGVVL---------TPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAV--QV 130
Query: 557 AKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGI---------SIIMEEHEKL 606
A+ + +L S F +R L N+LL + K+ D+G+ +M+EH K+
Sbjct: 131 AEGMGYLESK----RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKV 186
Query: 607 EAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV---GPIVTG 663
P++ RT + D + FG L E P +
Sbjct: 187 PFAWCAPES-----LKTRTFSH-------------ASDTWMFGVTLWEMFTYGQEPWIGL 228
Query: 664 KGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
G +L+++ G R+ P C Q+ +++V +C +P RP+F
Sbjct: 229 NGSQ-ILHKIDKEGE-----RLPRP---EDCPQDIYNVMV----QCWAHKPEDRPTF 272
>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain
pdb|4HZR|B Chain B, Crystal Structure Of Ack1 Kinase Domain
Length = 277
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 118/297 (39%), Gaps = 68/297 (22%)
Query: 445 LSFMGEGSRGKLYKGRLE--NGTYVAIRSLTFLKKYSIQNLKVRLDFLSK------LQHP 496
L +G+GS G + +G + +G V++ ++ LK + + DF+ + L H
Sbjct: 17 LEKLGDGSFGVVRRGEWDAPSGKTVSV-AVKCLKPDVLSQPEAMDDFIREVNAMHSLDHR 75
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGV 556
+L+ L G + T + +V E P GS L ++ +L R A+ V
Sbjct: 76 NLIRLYGVVL---------TPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAV--QV 124
Query: 557 AKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGI---------SIIMEEHEKL 606
A+ + +L S F +R L N+LL + K+ D+G+ +M+EH K+
Sbjct: 125 AEGMGYLESK----RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKV 180
Query: 607 EAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV---GPIVTG 663
P++ RT + D + FG L E P +
Sbjct: 181 PFAWCAPES-----LKTRTFSH-------------ASDTWMFGVTLWEMFTYGQEPWIGL 222
Query: 664 KGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
G +L+++ G R+ P C Q+ +++V +C +P RP+F
Sbjct: 223 NGSQ-ILHKIDKEGE-----RLPRP---EDCPQDIYNVMV----QCWAHKPEDRPTF 266
>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1
pdb|4FTA|A Chain A, Crystal Structure Of The Chk1
pdb|4FTC|A Chain A, Crystal Structure Of The Chk1
pdb|4FTN|A Chain A, Crystal Structure Of The Chk1
pdb|4FTQ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 439 TNNFDSLSFMGEGSRG--KLYKGRLENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQH 495
++D + +GEG+ G +L R+ VA++ + + +N+K + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
++V GH E Q +L EY G + P+ + D
Sbjct: 64 ENVVKFYGHRREGNIQ--------YLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ V +LH I+ + N+LLDE K+SD+G++ +
Sbjct: 113 LMAGVVYLHGIGIT---HRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|4FST|A Chain A, Crystal Structure Of The Chk1
Length = 269
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 439 TNNFDSLSFMGEGSRG--KLYKGRLENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQH 495
++D + +GEG+ G +L R+ VA++ + + +N+K + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
++V GH E Q +L EY G + P+ + D
Sbjct: 64 ENVVKFYGHRREGNIQ--------YLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ V +LH I+ + N+LLDE K+SD+G++ +
Sbjct: 113 LMAGVVYLHGIGIT---HRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor
Cis-3-[8-amino-1-(4-
Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
Length = 273
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 118/297 (39%), Gaps = 68/297 (22%)
Query: 445 LSFMGEGSRGKLYKGRLE--NGTYVAIRSLTFLKKYSIQNLKVRLDFLSK------LQHP 496
L +G+GS G + +G + +G V++ ++ LK + + DF+ + L H
Sbjct: 13 LEKLGDGSFGVVRRGEWDAPSGKTVSV-AVKCLKPDVLSQPEAMDDFIREVNAMHSLDHR 71
Query: 497 HLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGV 556
+L+ L G + T + +V E P GS L ++ +L R A+ V
Sbjct: 72 NLIRLYGVVL---------TPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAV--QV 120
Query: 557 AKAVHFLHSSVISGSFSNR-LTTNNILLDEHRIAKLSDYGI---------SIIMEEHEKL 606
A+ + +L S F +R L N+LL + K+ D+G+ +M+EH K+
Sbjct: 121 AEGMGYLESK----RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKV 176
Query: 607 EAKGEGPKARYGFLFICRTSAENVVIVVDIQRTKLEDDVYNFGFILLESLV---GPIVTG 663
P++ RT + D + FG L E P +
Sbjct: 177 PFAWCAPES-----LKTRTFSH-------------ASDTWMFGVTLWEMFTYGQEPWIGL 218
Query: 664 KGEAFLLNEMASFGSQDGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
G +L+++ G R+ P C Q+ +++V +C +P RP+F
Sbjct: 219 NGSQ-ILHKIDKEGE-----RLPRP---EDCPQDIYNVMV----QCWAHKPEDRPTF 262
>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent
Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In
Complex With Sto-609
Length = 298
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 480 IQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENC 539
I+ + + L KL HP++V L+ DD N + +++V+E + G + E
Sbjct: 80 IEQVYQEIAILKKLDHPNVVKLVEVL------DDPNEDHLYMVFELVNQGP----VMEVP 129
Query: 540 PENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
L + K + +LH I + +N+L+ E K++D+G+S
Sbjct: 130 TLKPLSEDQARFYFQDLIKGIEYLHYQKI---IHRDIKPSNLLVGEDGHIKIADFGVS 184
>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1
Catalytic Domain
pdb|1UVR|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-8
Length = 289
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 26/178 (14%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-----RLDF 489
K+ +F +GEGS + R L AI+ L K++ I+ KV D
Sbjct: 6 KKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILE--KRHIIKENKVPYVTRERDV 63
Query: 490 LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWS 547
+S+L HP V L QDD K++ Y NG ++ + + E ++
Sbjct: 64 MSRLDHPFFVKLY-----FTFQDD---EKLYFGLSYAKNGELLKYIRKIGSFDETCTRF- 114
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ A+ +LH G L NILL+E +++D+G + ++ K
Sbjct: 115 ----YTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 165
>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1
pdb|4GH2|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 18/165 (10%)
Query: 439 TNNFDSLSFMGEGSRG--KLYKGRLENGTYVAIRSLTFLKKYSI-QNLKVRLDFLSKLQH 495
++D + +GEG+ G +L R+ VA++ + + +N+K + L H
Sbjct: 5 VEDWDLVQTLGEGAYGEVQLAVNRVTEEA-VAVKIVDMKRAVDCPENIKKEICINKMLNH 63
Query: 496 PHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIG 555
++V GH E Q +L EY G + P+ + D
Sbjct: 64 ENVVKFYGHRREGNIQ--------YLFLEYCSGGELFDRIE---PDIGMPEPDAQRFFHQ 112
Query: 556 VAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ V +LH I+ + N+LLDE K+SD+G++ +
Sbjct: 113 LMAGVVYLHGIGIT---HRDIKPENLLLDERDNLKISDFGLATVF 154
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 75/192 (39%), Gaps = 43/192 (22%)
Query: 144 LQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICR-IATLTDIAMSNNEL 202
+Q L M N P + ++ LTVL L+ N L P I LT ++MSNN L
Sbjct: 101 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNL 159
Query: 203 SGKLPD-MSALTSLHVLDLRENKLDS-GLPLMPKGLVTVLLSRNLFSG-AIPQQFGEL-- 257
D A TSL L L N+L L L+P L +S NL S AIP EL
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP-SLFHANVSYNLLSTLAIPIAVEELDA 218
Query: 258 ------------------AQLQH-----------------LDLSFNDLSGIPPSVLFSLP 282
+LQH +DLS+N+L I +
Sbjct: 219 SHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278
Query: 283 NISYLHLASNML 294
+ L++++N L
Sbjct: 279 RLERLYISNNRL 290
>pdb|1Z5M|A Chain A, Crystal Structure Of
N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)
Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2-
Dimethylpropanediamide Complexed With Human Pdk1
pdb|2PE0|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
5-Hydroxy-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-1,
3-Dihydro- Indol-2-One Complex
pdb|2PE1|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
{2-Oxo-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-2,
3-Dihydro-1h- Indol-5-Yl}-Urea {bx-517} Complex
pdb|2PE2|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
3-{5-[2-Oxo-5-Ureido-1,
2-Dihydro-Indol-(3z)-Ylidenemethyl]-1h-
Pyrrol-3-Yl}-N-(2-Piperidin-1-Yl-Ethyl)-Benzamide
Complex
Length = 286
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 26/178 (14%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-----RLDF 489
K+ +F +GEGS + R L AI+ L K++ I+ KV D
Sbjct: 3 KKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILE--KRHIIKENKVPYVTRERDV 60
Query: 490 LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWS 547
+S+L HP V L QDD K++ Y NG ++ + + E ++
Sbjct: 61 MSRLDHPFFVKLY-----FTFQDD---EKLYFGLSYAKNGELLKYIRKIGSFDETCTRF- 111
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ A+ +LH G L NILL+E +++D+G + ++ K
Sbjct: 112 ----YTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 162
>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-3
Length = 286
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 26/178 (14%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-----RLDF 489
K+ +F +GEGS + R L AI+ L K++ I+ KV D
Sbjct: 5 KKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILE--KRHIIKENKVPYVTRERDV 62
Query: 490 LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWS 547
+S+L HP V L QDD K++ Y NG ++ + + E ++
Sbjct: 63 MSRLDHPFFVKLY-----FTFQDD---EKLYFGLSYAKNGELLKYIRKIGSFDETCTRF- 113
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ A+ +LH G L NILL+E +++D+G + ++ K
Sbjct: 114 ----YTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 164
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 84/201 (41%), Gaps = 29/201 (14%)
Query: 467 VAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEY 525
VAI+ + K + S+ L + +S+ HP++VS + ++++LV +
Sbjct: 43 VAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVK--------DELWLVMKL 94
Query: 526 IPNGSYR---AHLSENCPEN--VLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNN 580
+ GS H+ VL S IL V + + +LH + G + N
Sbjct: 95 LSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGN 151
Query: 581 ILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFI---CRTSAENVVIVVDIQ 637
ILL E +++D+G+S L G+ + + F+ C + E ++ ++
Sbjct: 152 ILLGEDGSVQIADFGVSAF------LATGGDITRNKVRKTFVGTPCWMAPE---VMEQVR 202
Query: 638 RTKLEDDVYNFGFILLESLVG 658
+ D+++FG +E G
Sbjct: 203 GYDFKADIWSFGITAIELATG 223
>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8
pdb|3NUU|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment11
pdb|3NUY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment17
Length = 286
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 26/178 (14%)
Query: 436 KEATNNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-----RLDF 489
K+ +F +GEGS + R L AI+ L K++ I+ KV D
Sbjct: 4 KKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILE--KRHIIKENKVPYVTRERDV 61
Query: 490 LSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWS 547
+S+L HP V L QDD K++ Y NG ++ + + E ++
Sbjct: 62 MSRLDHPFFVKLY-----FTFQDD---EKLYFGLSYAKNGELLKYIRKIGSFDETCTRF- 112
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ A+ +LH G L NILL+E +++D+G + ++ K
Sbjct: 113 ----YTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 163
>pdb|1ZY9|A Chain A, Crystal Structure Of Alpha-Galactosidase (Ec 3.2.1.22)
(Melibiase) (Tm1192) From Thermotoga Maritima At 2.34 A
Resolution
Length = 564
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
Query: 213 TSLHVLDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGEL-AQLQHLDLSFNDLS 271
T+ V D+ E L S + +G V LS + + GEL A L++ D+ F+D
Sbjct: 100 TASVVPDVLERNLQSDYFVAEEGKVYGFLSSKIAHPFFAVEDGELVAYLEYFDVEFDDFV 159
Query: 272 GIPPSVLFSLPNI-----SYLHLASNMLSGTLPKDLSCG 305
+ P V+ PN Y L + +PK G
Sbjct: 160 PLEPLVVLEDPNTPLLLEKYAELVGXENNARVPKHTPTG 198
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 81/193 (41%), Gaps = 49/193 (25%)
Query: 117 LSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDD-----NVPDWWDSLSNLTVL 171
+ LELL++SSN L+ + + L L+TL ++ N+ + ++ + +N++ +
Sbjct: 57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV 114
Query: 172 SLKSNQLKGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPL 231
S Q K + +I L D+ D + + LDL+ N++D+
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDL------------DEGCRSRVQYLDLKLNEIDT---- 158
Query: 232 MPKGLVTVLLSRNLFSGAIPQQFGELAQ----LQHLDLSFNDLSGIPPSVLFSLPNISYL 287
F ELA L+HL+L +N + + V+F+ + L
Sbjct: 159 --------------------VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA--KLKTL 196
Query: 288 HLASNMLSGTLPK 300
L+SN L+ P+
Sbjct: 197 DLSSNKLAFMGPE 209
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 84/201 (41%), Gaps = 29/201 (14%)
Query: 467 VAIRSLTFLK-KYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEY 525
VAI+ + K + S+ L + +S+ HP++VS + ++++LV +
Sbjct: 38 VAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVK--------DELWLVMKL 89
Query: 526 IPNGSYR---AHLSENCPEN--VLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTNN 580
+ GS H+ VL S IL V + + +LH + G + N
Sbjct: 90 LSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGN 146
Query: 581 ILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFI---CRTSAENVVIVVDIQ 637
ILL E +++D+G+S L G+ + + F+ C + E ++ ++
Sbjct: 147 ILLGEDGSVQIADFGVSAF------LATGGDITRNKVRKTFVGTPCWMAPE---VMEQVR 197
Query: 638 RTKLEDDVYNFGFILLESLVG 658
+ D+++FG +E G
Sbjct: 198 GYDFKADIWSFGITAIELATG 218
>pdb|4A17|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 2.
pdb|4A1A|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 3.
pdb|4A1C|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 4.
pdb|4A1E|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 1
Length = 181
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 297 TLPKDLSCGSKLDSISDKRVVKFGGNCLSYD 327
T+PK C K + KR++ GG CL++D
Sbjct: 95 TVPKLTVCALKFTETARKRILAAGGKCLTFD 125
>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With
Ind E804
Length = 324
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 75/161 (46%), Gaps = 18/161 (11%)
Query: 440 NNFDSLSFMGEGSRGKLYKGRLE-NGTYVAIRSLTFLKKYSIQNLKVR-LDFLSKLQHPH 497
+ L +GEG+ +YKG+ + VA++ + + +R + L L+H +
Sbjct: 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHAN 61
Query: 498 LVSLLGHCIESGSQDDSNTNK-VFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGV 556
+V+L D +T K + LV+EY+ + + +L ++C N++ + L +
Sbjct: 62 IVTL---------HDIIHTEKSLTLVFEYL-DKDLKQYL-DDCG-NIINMHNVKLFLFQL 109
Query: 557 AKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ + + H + L N+L++E KL+D+G++
Sbjct: 110 LRGLAYCHRQKV---LHRDLKPQNLLINERGELKLADFGLA 147
>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70
Length = 613
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 56/281 (19%), Positives = 103/281 (36%), Gaps = 63/281 (22%)
Query: 459 GRLENGTY--------VAIRSLTF-LKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESG 509
G + G Y VAI+ L +K + + + +L +P++V L+G C
Sbjct: 350 GSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC---- 405
Query: 510 SQDDSNTNKVFLVYEYIPNGSYRAHL---SENCP-ENVLKWSDRLAILIGVAKAVHFLHS 565
+ LV E G L E P NV + ++++ + + +F+H
Sbjct: 406 -----QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHR 460
Query: 566 SVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEGPKARYGFLFI 622
+ L N+LL AK+SD+G+S + + + + G+ P Y
Sbjct: 461 N---------LAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYA---- 507
Query: 623 CRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL---VGPIVTGKGEAFLLNEMASFGSQ 679
++ ++ DV+++G + E+L P KG E+ +F Q
Sbjct: 508 --------PECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP-----EVMAFIEQ 554
Query: 680 DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
R C E + ++ + C + RP F
Sbjct: 555 GKR---------MECPPECPPELYALMSDCWIYKWEDRPDF 586
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%)
Query: 116 RLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKS 175
RL L L++ N L G P+ +Q L + N + + L L L+L
Sbjct: 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111
Query: 176 NQLKGQFPSSICRIATLTDIAMSNN 200
NQ+ P S + +LT + +++N
Sbjct: 112 NQISCVMPGSFEHLNSLTSLNLASN 136
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 254 FGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNML 294
FG L L L+L N L+GI P+ +I L L N +
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90
>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain
In Complex With Atp
pdb|3HRF|A Chain A, Crystal Structure Of Human Pdk1 Kinase Domain In Complex
With An Allosteric Activator Bound To The Pif-Pocket
pdb|3RCJ|A Chain A, Rapid Preparation Of Triazolyl Substituted Nh-Heterocyclic
Kinase Inhibitors Via One-Pot Sonogashira Coupling
Tms-Deprotection Cuaac Sequence
pdb|4A06|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps114 Bound To The Pif-Pocket
pdb|4AW1|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps210 Bound To The Pif-Pocket
Length = 311
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-----RLDFLSKL 493
+F +GEGS + R L AI+ L K++ I+ KV D +S+L
Sbjct: 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILE--KRHIIKENKVPYVTRERDVMSRL 89
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLA 551
HP V L QDD K++ Y NG ++ + + E ++
Sbjct: 90 DHPFFVKLY-----FTFQDD---EKLYFGLSYAKNGELLKYIRKIGSFDETCTRF----- 136
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ A+ +LH G L NILL+E +++D+G + ++ K
Sbjct: 137 YTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 187
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 19/159 (11%)
Query: 442 FDSLSFMGEGSRGKLYKGRLENGT--YVAIRSLTFLKKYSIQNL-KVRLDFLSKLQHPHL 498
F L +G+GS G+++KG ++N T VAI+ + + + + LS+ ++
Sbjct: 25 FTKLERIGKGSFGEVFKG-IDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSSYV 83
Query: 499 VSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVAK 558
G ++ +K++++ EY+ GS L P + + + +L + K
Sbjct: 84 TKYYGSYLKG--------SKLWIIMEYLGGGS-ALDLLRAGPFDEFQIA---TMLKEILK 131
Query: 559 AVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ +LHS + N+LL E KL+D+G++
Sbjct: 132 GLDYLHSE---KKIHRDIKAANVLLSEQGDVKLADFGVA 167
>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent
Kinase- 1 (Pdk-1)catalytic Domain Bound To A
Dibenzonaphthyridine Inhibitor
pdb|3ION|A Chain A, Pdk1 In Complex With Compound 8h
Length = 312
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-----RLDFLSKL 493
+F +GEGS + R L AI+ L K++ I+ KV D +S+L
Sbjct: 33 EDFKFGKILGEGSFSTVVLARELATSREYAIKILE--KRHIIKENKVPYVTRERDVMSRL 90
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLA 551
HP V L QDD K++ Y NG ++ + + E ++
Sbjct: 91 DHPFFVKLY-----FTFQDD---EKLYFGLSYAKNGELLKYIRKIGSFDETCTRF----- 137
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ A+ +LH G L NILL+E +++D+G + ++ K
Sbjct: 138 YTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 188
>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain
Length = 310
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-----RLDFLSKL 493
+F +GEGS + R L AI+ L K++ I+ KV D +S+L
Sbjct: 30 EDFKFGKILGEGSFSTVVLARELATSREYAIKILE--KRHIIKENKVPYVTRERDVMSRL 87
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLA 551
HP V L QDD K++ Y NG ++ + + E ++
Sbjct: 88 DHPFFVKLY-----FTFQDD---EKLYFGLSYAKNGELLKYIRKIGSFDETCTRF----- 134
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ A+ +LH G L NILL+E +++D+G + ++ K
Sbjct: 135 YTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 185
>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|C Chain C, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 406
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 29/181 (16%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYV-AIRSLT---FLKKYSIQNLKVRL 487
+ +L+ +++ + +G G+ G++ R ++ V A++ L+ +K+
Sbjct: 66 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEER 125
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE-NCPENVLKW 546
D ++ P +V L QDD +++V EY+P G +S + PE KW
Sbjct: 126 DIMAFANSPWVVQLF-----YAFQDD---RYLYMVMEYMPGGDLVNLMSNYDVPE---KW 174
Query: 547 SDRLAILIGVA-KAVH---FLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE 602
+ + +A A+H F+H V +N+LLD+ KL+D+G + M +
Sbjct: 175 ARFYTAEVVLALDAIHSMGFIHRDV---------KPDNMLLDKSGHLKLADFGTCMKMNK 225
Query: 603 H 603
Sbjct: 226 E 226
>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In
Complex With Compound 9
Length = 311
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-----RLDFLSKL 493
+F +GEGS + R L AI+ L K++ I+ KV D +S+L
Sbjct: 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILE--KRHIIKENKVPYVTRERDVMSRL 89
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLA 551
HP V L QDD K++ Y NG ++ + + E ++
Sbjct: 90 DHPFFVKLY-----FTFQDD---EKLYFGLSYAKNGELLKYIRKIGSFDETCTRF----- 136
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ A+ +LH G L NILL+E +++D+G + ++ K
Sbjct: 137 YTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 187
>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
pdb|3QC4|B Chain B, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
Length = 314
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-----RLDFLSKL 493
+F +GEGS + R L AI+ L K++ I+ KV D +S+L
Sbjct: 35 EDFKFGKILGEGSFSTVVLARELATSREYAIKILE--KRHIIKENKVPYVTRERDVMSRL 92
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLA 551
HP V L QDD K++ Y NG ++ + + E ++
Sbjct: 93 DHPFFVKLY-----FTFQDD---EKLYFGLSYAKNGELLKYIRKIGSFDETCTRF----- 139
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ A+ +LH G L NILL+E +++D+G + ++ K
Sbjct: 140 YTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 190
>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i
pdb|3QCQ|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-(3-
Amino-1h-Indazol-6-Yl)-N4-Ethyl-2,4-Pyrimidinediamine
pdb|3QCS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-[2-
Amino-6-(4-Morpholinyl)-4-Pyrimidinyl]-1h-Indazol-3-
Amine
pdb|3QCX|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-{2-
Amino-6-[(3r)-3-Methyl-4-Morpholinyl]-4-Pyrimidinyl}-1h-
Indazol-3- Amine
pdb|3QCY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 4-[2-
Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-N-
Phenyl-2- Morpholinecarboxamide
pdb|3QD0|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With (2r,5s)-
1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-6-
Methyl-N- Phenyl-3-Piperidinecarboxamide
pdb|3QD3|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1- Dimethylethyl
{(3r,6s)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-6-Methyl-3-Piperidinyl}carbamate
pdb|3QD4|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1-
Dimethylethyl{(3r,
5r)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-5-Methyl-3-Piperidinyl}carbamate
Length = 312
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-----RLDFLSKL 493
+F +GEGS + R L AI+ L K++ I+ KV D +S+L
Sbjct: 33 EDFKFGKILGEGSFSTVVLARELATSREYAIKILE--KRHIIKENKVPYVTRERDVMSRL 90
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLA 551
HP V L QDD K++ Y NG ++ + + E ++
Sbjct: 91 DHPFFVKLY-----FTFQDD---EKLYFGLSYAKNGELLKYIRKIGSFDETCTRF----- 137
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ A+ +LH G L NILL+E +++D+G + ++ K
Sbjct: 138 YTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 188
>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through
Fragment-Based Lead Discovery
pdb|3RWQ|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-----RLDFLSKL 493
+F +GEGS + R L AI+ L K++ I+ KV D +S+L
Sbjct: 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILE--KRHIIKENKVPYVTRERDVMSRL 89
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLA 551
HP V L QDD K++ Y NG ++ + + E ++
Sbjct: 90 DHPFFVKLY-----FTFQDD---EKLYFGLSYAKNGELLKYIRKIGSFDETCTRF----- 136
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ A+ +LH G L NILL+E +++D+G + ++ K
Sbjct: 137 YTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 187
>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ESM|B Chain B, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ETK|A Chain A, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETK|B Chain B, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETR|A Chain A, Crystal Structure Of Rock I Bound To Y-27632
pdb|2ETR|B Chain B, Crystal Structure Of Rock I Bound To Y-27632
pdb|3D9V|A Chain A, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3D9V|B Chain B, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3NCZ|A Chain A, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|B Chain B, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|C Chain C, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|D Chain D, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NDM|A Chain A, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|B Chain B, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|C Chain C, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|D Chain D, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
Length = 415
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 29/181 (16%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYV-AIRSLT---FLKKYSIQNLKVRL 487
+ +L+ +++ + +G G+ G++ R ++ V A++ L+ +K+
Sbjct: 66 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEER 125
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE-NCPENVLKW 546
D ++ P +V L QDD +++V EY+P G +S + PE KW
Sbjct: 126 DIMAFANSPWVVQLF-----YAFQDDR---YLYMVMEYMPGGDLVNLMSNYDVPE---KW 174
Query: 547 SDRLAILIGVA-KAVH---FLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE 602
+ + +A A+H F+H V +N+LLD+ KL+D+G + M +
Sbjct: 175 ARFYTAEVVLALDAIHSMGFIHRDV---------KPDNMLLDKSGHLKLADFGTCMKMNK 225
Query: 603 H 603
Sbjct: 226 E 226
>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|B Chain B, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|C Chain C, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|D Chain D, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3TV7|A Chain A, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|B Chain B, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|C Chain C, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|D Chain D, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TWJ|A Chain A, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|B Chain B, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|C Chain C, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|D Chain D, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
Length = 410
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 29/181 (16%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYV-AIRSLT---FLKKYSIQNLKVRL 487
+ +L+ +++ + +G G+ G++ R ++ V A++ L+ +K+
Sbjct: 61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEER 120
Query: 488 DFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE-NCPENVLKW 546
D ++ P +V L QDD +++V EY+P G +S + PE KW
Sbjct: 121 DIMAFANSPWVVQLF-----YAFQDDR---YLYMVMEYMPGGDLVNLMSNYDVPE---KW 169
Query: 547 SDRLAILIGVA-KAVH---FLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE 602
+ + +A A+H F+H V +N+LLD+ KL+D+G + M +
Sbjct: 170 ARFYTAEVVLALDAIHSMGFIHRDV---------KPDNMLLDKSGHLKLADFGTCMKMNK 220
Query: 603 H 603
Sbjct: 221 E 221
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 131 FGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICRIA 190
++P+GI Q L + N P +DSL+ LT L+L NQL ++
Sbjct: 31 LASVPAGIPTTT--QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLT 88
Query: 191 TLTDIAMSNNELS----GKLPDMSALTSLHVLD 219
LT +A+ N+L G ++ +LT +++ +
Sbjct: 89 KLTHLALHINQLKSIPMGVFDNLKSLTHIYLFN 121
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 213 TSLHVLDLREN---KLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFND 269
T+ VL L N KL+ G+ L + L+ N + F +L +L HL L N
Sbjct: 40 TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQ 99
Query: 270 LSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKL 308
L IP V +L ++++++L +N P D C L
Sbjct: 100 LKSIPMGVFDNLKSLTHIYLFNN------PWDCECSDIL 132
>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ly333531
pdb|1UU7|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-2
pdb|1UU8|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-1
pdb|1OKY|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Staurosporine
pdb|1OKZ|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ucn-01
Length = 310
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-----RLDFLSKL 493
+F +GEGS + R L AI+ L K++ I+ KV D +S+L
Sbjct: 30 EDFKFGKILGEGSFSTVVLARELATSREYAIKILE--KRHIIKENKVPYVTRERDVMSRL 87
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLA 551
HP V L QDD K++ Y NG ++ + + E ++
Sbjct: 88 DHPFFVKLY-----FTFQDD---EKLYFGLSYAKNGELLKYIRKIGSFDETCTRF----- 134
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ A+ +LH G L NILL+E +++D+G + ++ K
Sbjct: 135 YTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 185
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 141 LVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQL----KGQFPSSICRIATLTDIA 196
L LQ L ++ N+ + P + L+ L LSL SN+L P A L +
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP------ANLEILD 532
Query: 197 MSNNELSGKLPDMSALTSLHVLDLRENKL 225
+S N+L PD+ SL VLD+ NK
Sbjct: 533 ISRNQLLAPNPDV--FVSLSVLDITHNKF 559
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 234 KGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNM 293
K L + L+ N + + F L LQ L+LS+N L + S + LP ++Y+ L N
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349
Query: 294 LS 295
++
Sbjct: 350 IA 351
>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-----RLDFLSKL 493
+F +GEGS + R L AI+ L K++ I+ KV D +S+L
Sbjct: 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILE--KRHIIKENKVPYVTRERDVMSRL 89
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLA 551
HP V L QDD K++ Y NG ++ + + E ++
Sbjct: 90 DHPFFVKLY-----FTFQDD---EKLYFGLSYAKNGELLKYIRKIGSFDETCTRF----- 136
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ A+ +LH G L NILL+E +++D+G + ++ K
Sbjct: 137 YTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 187
>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-----RLDFLSKL 493
+F +GEGS + R L AI+ L K++ I+ KV D +S+L
Sbjct: 30 EDFKFGKILGEGSFSTVVLARELATSREYAIKILE--KRHIIKENKVPYVTRERDVMSRL 87
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLA 551
HP V L QDD K++ Y NG ++ + + E ++
Sbjct: 88 DHPFFVKLY-----FTFQDD---EKLYFGLSYAKNGELLKYIRKIGSFDETCTRF----- 134
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ A+ +LH G L NILL+E +++D+G + ++ K
Sbjct: 135 YTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 185
>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYN|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYO|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
pdb|3NYO|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
Length = 576
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 13/83 (15%)
Query: 576 LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD 635
L NILLD+H ++SD G+++ + E G+ K R G T VV
Sbjct: 312 LKPENILLDDHGHIRISDLGLAVHVPE-------GQTIKGRVG------TVGYMAPEVVK 358
Query: 636 IQRTKLEDDVYNFGFILLESLVG 658
+R D + G +L E + G
Sbjct: 359 NERYTFSPDWWALGCLLYEMIAG 381
>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps171 Bound To The Pif-Pocket
pdb|4AW0|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps182 Bound To The Pif-Pocket
Length = 311
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-----RLDFLSKL 493
+F +GEGS + R L AI+ L K++ I+ KV D +S+L
Sbjct: 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILE--KRHIIKENKVPYVTRERDVMSRL 89
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLA 551
HP V L QDD K++ Y NG ++ + + E ++
Sbjct: 90 DHPFFVKLY-----FTFQDD---EKLYFGLSYAKNGELLKYIRKIGSFDETCTRF----- 136
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ A+ +LH G L NILL+E +++D+G + ++ K
Sbjct: 137 YTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 187
>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex
With Staurosporine
Length = 287
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 56/281 (19%), Positives = 102/281 (36%), Gaps = 63/281 (22%)
Query: 459 GRLENGTY--------VAIRSLTF-LKKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESG 509
G + G Y VAI+ L +K + + + +L +P++V L+G C
Sbjct: 24 GSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC---- 79
Query: 510 SQDDSNTNKVFLVYEYIPNGSYRAHL---SENCP-ENVLKWSDRLAILIGVAKAVHFLHS 565
+ LV E G L E P NV + ++++ + + +F+H
Sbjct: 80 -----QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHR 134
Query: 566 SVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM---EEHEKLEAKGEGPKARYGFLFI 622
L N+LL AK+SD+G+S + + + + G+ P Y
Sbjct: 135 D---------LAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYA---- 181
Query: 623 CRTSAENVVIVVDIQRTKLEDDVYNFGFILLESL---VGPIVTGKGEAFLLNEMASFGSQ 679
++ ++ DV+++G + E+L P KG E+ +F Q
Sbjct: 182 --------PECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP-----EVMAFIEQ 228
Query: 680 DGRRRIVDPVVLTTCSQESLSIVVSITNKCICPEPSSRPSF 720
R C E + ++ + C + RP F
Sbjct: 229 GKR---------MECPPECPPELYALMSDCWIYKWEDRPDF 260
>pdb|2Z8X|A Chain A, Crystal Structure Of Extracellular Lipase From Pseudomonas
Sp. Mis38
pdb|2ZVD|A Chain A, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase In An
Open Conformation
pdb|2ZVD|C Chain C, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase In An
Open Conformation
pdb|3A6Z|A Chain A, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase (Pml) In
The Open Conformation Following Dialysis Against Ca-Free
Buffer
pdb|3A6Z|C Chain C, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase (Pml) In
The Open Conformation Following Dialysis Against Ca-Free
Buffer
pdb|3A70|A Chain A, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase In
Complex Diethyl Phosphate
pdb|3A70|C Chain C, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase In
Complex Diethyl Phosphate
Length = 617
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 514 SNTNKVFL-VYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
SN VFL V +PN +RAH S + VLK+ L+GVA
Sbjct: 561 SNDKLVFLGVQGVLPNDDFRAHASMVGQDTVLKFGGDSVTLVGVA 605
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 86/199 (43%), Gaps = 36/199 (18%)
Query: 467 VAIRSLTFL----KKYSIQNLKVRLDFLSKLQHPHLVSLLGHCIESGSQDDSNTNKVFLV 522
VAI+++ F+ K+ +++ + + S+L H ++VS+ I+ +DD +LV
Sbjct: 39 VAIKAI-FIPPREKEETLKRFEREVHNSSQLSHQNIVSM----IDVDEEDDC----YYLV 89
Query: 523 YEYIPNGSYRAHLSENCP---ENVLKWSDRLAILIGVAKAVHFLHSSVISGSFSNRLTTN 579
EYI + ++ + P + + +++++ I A + +H +
Sbjct: 90 MEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMRIVHRDI---------KPQ 140
Query: 580 NILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVDIQRT 639
NIL+D ++ K+ D+GI+ + E + +Y + A +
Sbjct: 141 NILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECT------- 193
Query: 640 KLEDDVYNFGFILLESLVG 658
D+Y+ G +L E LVG
Sbjct: 194 ----DIYSIGIVLYEMLVG 208
>pdb|2ZJ7|A Chain A, Crystal Structure Of D157a Mutant Of Pseudomonas Sp. Mis38
Lipase
Length = 617
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 514 SNTNKVFL-VYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
SN VFL V +PN +RAH S + VLK+ L+GVA
Sbjct: 561 SNDKLVFLGVQGVLPNDDFRAHASMVGQDTVLKFGGDSVTLVGVA 605
>pdb|2ZJ6|A Chain A, Crystal Structure Of D337a Mutant Of Pseudomonas Sp. Mis38
Lipase
Length = 617
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 514 SNTNKVFL-VYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
SN VFL V +PN +RAH S + VLK+ L+GVA
Sbjct: 561 SNDKLVFLGVQGVLPNDDFRAHASMVGQDTVLKFGGDSVTLVGVA 605
>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
pdb|2ACX|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
Length = 576
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 13/83 (15%)
Query: 576 LTTNNILLDEHRIAKLSDYGISIIMEEHEKLEAKGEGPKARYGFLFICRTSAENVVIVVD 635
L NILLD+H ++SD G+++ + E G+ K R G T VV
Sbjct: 312 LKPENILLDDHGHIRISDLGLAVHVPE-------GQTIKGRVG------TVGYMAPEVVK 358
Query: 636 IQRTKLEDDVYNFGFILLESLVG 658
+R D + G +L E + G
Sbjct: 359 NERYTFSPDWWALGCLLYEMIAG 381
>pdb|2Z8Z|A Chain A, Crystal Structure Of A Platinum-Bound S445c Mutant Of
Pseudomonas Sp. Mis38 Lipase
Length = 617
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 514 SNTNKVFL-VYEYIPNGSYRAHLSENCPENVLKWSDRLAILIGVA 557
SN VFL V +PN +RAH S + VLK+ L+GVA
Sbjct: 561 SNDKLVFLGVQGVLPNDDFRAHASMVGQDTVLKFGGDSVTLVGVA 605
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%)
Query: 118 SSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQ 177
++ ++L + N + P RL +L L +D N +D L+ LT LSL NQ
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 178 LKGQFPSSICRIATLTDIAMSNNELSGKLPDM 209
LK + + +LT I + NN D+
Sbjct: 98 LKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI 129
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 209 MSALTSLHVLDLRENKLDSG-------LPLMPKGLVTVLLSRNLFSGAIPQQ-FGELAQL 260
++ L L L+L+ N G L ++ + +L S NL S I QQ F L +
Sbjct: 444 LAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLS--IDQQAFHGLRNV 501
Query: 261 QHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSCGSKLDSISDKRVVKFG 320
HLDLS N L+G L L + YL++ASN + +P L L ++S + ++
Sbjct: 502 NHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIR-IIPPHL-----LPALSQQSIINLS 554
Query: 321 GNCLSYDTPSQHKEAFCKE 339
N L + H + KE
Sbjct: 555 HNPLDCTCSNIHFITWYKE 573
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 249 AIPQQ-FGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASNMLSGTLPKDLSC 304
AIP F +L QL LDL+ N L IP +L ++++++L +N P D C
Sbjct: 71 AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN------PWDCEC 121
>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human
Pdk1 Complex 2
Length = 311
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-----RLDFLSKL 493
+F +GEGS + R L AI+ L K++ I+ KV D +S+L
Sbjct: 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILE--KRHIIKENKVPYVTRERDVMSRL 89
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLA 551
HP V L QDD K++ Y NG ++ + + E ++
Sbjct: 90 DHPFFVKLY-----FTFQDD---EKLYFGLSYAKNGCLLKYIRKIGSFDETCTRF----- 136
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ A+ +LH G L NILL+E +++D+G + ++ K
Sbjct: 137 YTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 187
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 80/207 (38%), Gaps = 41/207 (19%)
Query: 115 HRLSSLELLDMSSNFLF----------GAIPSGISRLVRLQTLTMDTNFFD--DNVPDWW 162
L SLE LD+S N + GA PS LQTL + N +
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPS-------LQTLVLSQNHLRSMQKTGEIL 383
Query: 163 DSLSNLTVLSLKSNQL-----KGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHV 217
+L NLT L + N Q+P + R L+ + ++ +L V
Sbjct: 384 LTLKNLTSLDISRNTFHPMPDSCQWPEKM-RFLNLSSTGI-------RVVKTCIPQTLEV 435
Query: 218 LDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSV 277
LD+ N LDS +P+ L + +SRN +P L + +S N L +P +
Sbjct: 436 LDVSNNNLDSFSLFLPR-LQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGI 492
Query: 278 LFSLPNISYLHLASNMLSGTLPKDLSC 304
L ++ + L +N P D SC
Sbjct: 493 FDRLTSLQKIWLHTN------PWDCSC 513
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 254 FGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
F L L+HLDLS N LS + S L ++ YL+L N
Sbjct: 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 192 LTDIAMSNNELSGKLP-DMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRN-----L 245
L+++ ++ N + P S LTSL L E KL S L P G + L N +
Sbjct: 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFI 140
Query: 246 FSGAIPQQFGELAQLQHLDLSFNDLSGI 273
S +P F L L H+DLS+N + I
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTI 168
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%)
Query: 118 SSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQ 177
++ ++L + N + P RL +L L +D N +D L+ LT LSL NQ
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 178 LKGQFPSSICRIATLTDIAMSNNELSGKLPDM 209
LK + + +LT I + NN D+
Sbjct: 90 LKSIPRGAFDNLRSLTHIWLLNNPWDCACSDI 121
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 192 LTDIAMSNNELSGKLP-DMSALTSLHVLDLRENKLDSGLPLMPKGLVTVLLSRN-----L 245
L+++ ++ N + P S LTSL L E KL S L P G + L N +
Sbjct: 77 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFI 135
Query: 246 FSGAIPQQFGELAQLQHLDLSFNDLSGI 273
S +P F L L H+DLS+N + I
Sbjct: 136 HSCKLPAYFSNLTNLVHVDLSYNYIQTI 163
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%)
Query: 118 SSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQ 177
++ ++L + N + P RL +L L +D N +D L+ LT LSL NQ
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 178 LKGQFPSSICRIATLTDIAMSNNELSGKLPDM 209
LK + + +LT I + NN D+
Sbjct: 90 LKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI 121
>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead
Compound
Length = 292
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 26/169 (15%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-----RLDFLSKL 493
+F +GEGS + R L AI+ L K++ I+ KV D +S+L
Sbjct: 14 EDFKFGKILGEGSFSTVVLARELATSREYAIKILE--KRHIIKENKVPYVTRERDVMSRL 71
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLA 551
HP V L QDD K++ Y NG ++ + + E ++
Sbjct: 72 DHPFFVKLY-----FTFQDD---EKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYT--- 120
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ A+ +LH G L NILL+E +++D+G + ++
Sbjct: 121 --AEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVL 164
>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7
Length = 311
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 26/169 (15%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-----RLDFLSKL 493
+F +GEGS + R L AI+ L K++ I+ KV D +S+L
Sbjct: 29 EDFKFGKILGEGSFSTVVLARELATSREYAIKILE--KRHIIKENKVPYVTRERDVMSRL 86
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLA 551
HP V L QDD K++ Y NG ++ + + E ++
Sbjct: 87 DHPFFVKLY-----FTFQDD---EKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYT--- 135
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ A+ +LH G L NILL+E +++D+G + ++
Sbjct: 136 --AEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVL 179
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 61/151 (40%), Gaps = 27/151 (17%)
Query: 149 MDTNFFD--DNVP------DW-WDSLSNLTVLSLKSNQLKGQFPSSICRIATLTD----- 194
M+ NF+ DN+P D W+ L +L S S S C I T+ D
Sbjct: 16 MELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 75
Query: 195 -------IAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVL----LSR 243
I N S L S L+SL L E L S L P G + L ++
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAH 134
Query: 244 NLF-SGAIPQQFGELAQLQHLDLSFNDLSGI 273
NL S +P+ F L L+HLDLS N + I
Sbjct: 135 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 61/151 (40%), Gaps = 27/151 (17%)
Query: 149 MDTNFFD--DNVP------DW-WDSLSNLTVLSLKSNQLKGQFPSSICRIATLTD----- 194
M+ NF+ DN+P D W+ L +L S S S C I T+ D
Sbjct: 17 MELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 76
Query: 195 -------IAMSNNELSGKLPDMSALTSLHVLDLRENKLDSGLPLMPKGLVTVL----LSR 243
I N S L S L+SL L E L S L P G + L ++
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAH 135
Query: 244 NLF-SGAIPQQFGELAQLQHLDLSFNDLSGI 273
NL S +P+ F L L+HLDLS N + I
Sbjct: 136 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6
pdb|3NAY|B Chain B, Pdk1 In Complex With Inhibitor Mp6
Length = 311
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 26/169 (15%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-----RLDFLSKL 493
+F +GEGS + R L AI+ L K++ I+ KV D +S+L
Sbjct: 29 EDFKFGKILGEGSFSTVVLARELATSREYAIKILE--KRHIIKENKVPYVTRERDVMSRL 86
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLA 551
HP V L QDD K++ Y NG ++ + + E ++
Sbjct: 87 DHPFFVKLY-----FTFQDD---EKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYT--- 135
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIM 600
+ A+ +LH G L NILL+E +++D+G + ++
Sbjct: 136 --AEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVL 179
>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
pdb|2BUJ|B Chain B, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
Length = 317
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 448 MGEG--SRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLSKLQHPHLVSLLGHC 505
+GEG S L +G L +G + A++ + ++ + + D HP+++ L+ +C
Sbjct: 37 LGEGGFSYVDLVEG-LHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYC 95
Query: 506 I-ESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE-NCPENVLKWSDRLAILIGVAKAVHFL 563
+ E G++ ++ +L+ + G+ + N L L +L+G+ + + +
Sbjct: 96 LRERGAKHEA-----WLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAI 150
Query: 564 HSSVISGSFSNRLTTNNILLDEHRIAKLSDYG 595
H+ G L NILL + L D G
Sbjct: 151 HA---KGYAHRDLKPTNILLGDEGQPVLMDLG 179
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 20/160 (12%)
Query: 442 FDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKK-YSIQNLKVR-LDFLSKLQHPHLV 499
+ L +GEG+ G +YK + G A++ + K+ I + +R + L +L+H ++V
Sbjct: 4 YHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIV 63
Query: 500 SLLGHCIESGSQDDSNTNK-VFLVYEYIPNGSYR-AHLSENCPENVLKWSDRLAILIGVA 557
L D +T K + LV+E++ + + E E+V S L +L G+A
Sbjct: 64 KLY---------DVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIA 114
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ H + L N+L++ K++D+G++
Sbjct: 115 ----YCHDRRV---LHRDLKPQNLLINREGELKIADFGLA 147
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 80/216 (37%), Gaps = 43/216 (19%)
Query: 112 DKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTNFFDDNVPDWWDSLSNLTVL 171
D L LE+L + N + + L L TL + N+ ++ LS L L
Sbjct: 93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152
Query: 172 SLKSNQLKGQFPSSICRIATLTDIAM---------SNNELSG---------------KLP 207
L++N ++ + R+ +L + + S G +P
Sbjct: 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212
Query: 208 DMSALTSLHVLDLRENKLDSGLPLMPKGLVTV-----------LLSRNLFSGAIPQQFGE 256
+++ L L L++ N P GL ++ L+ RN F G
Sbjct: 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG-------- 264
Query: 257 LAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
LA L L+L+ N+LS +P + L + LHL N
Sbjct: 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 20/160 (12%)
Query: 442 FDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKK-YSIQNLKVR-LDFLSKLQHPHLV 499
+ L +GEG+ G +YK + G A++ + K+ I + +R + L +L+H ++V
Sbjct: 4 YHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIV 63
Query: 500 SLLGHCIESGSQDDSNTNK-VFLVYEYIPNGSYR-AHLSENCPENVLKWSDRLAILIGVA 557
L D +T K + LV+E++ + + E E+V S L +L G+A
Sbjct: 64 KLY---------DVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIA 114
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ H + L N+L++ K++D+G++
Sbjct: 115 ----YCHDRRV---LHRDLKPQNLLINREGELKIADFGLA 147
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 164 SLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNEL-SGKLPDMSALTSLHVLDLRE 222
S L VL L +++ + ++ L+ + ++ N + S L S L+SL L E
Sbjct: 51 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 110
Query: 223 NKLDSGLPLMPKGLVTVL----LSRNLF-SGAIPQQFGELAQLQHLDLSFNDLSGI 273
L S L P G + L ++ NL S +P+ F L L+HLDLS N + I
Sbjct: 111 TNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 20/160 (12%)
Query: 442 FDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKK-YSIQNLKVR-LDFLSKLQHPHLV 499
+ L +GEG+ G +YK + G A++ + K+ I + +R + L +L+H ++V
Sbjct: 4 YHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIV 63
Query: 500 SLLGHCIESGSQDDSNTNK-VFLVYEYIPNGSYR-AHLSENCPENVLKWSDRLAILIGVA 557
L D +T K + LV+E++ + + E E+V S L +L G+A
Sbjct: 64 KLY---------DVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIA 114
Query: 558 KAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ H + L N+L++ K++D+G++
Sbjct: 115 ----YCHDRRV---LHRDLKPQNLLINREGELKIADFGLA 147
>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 26/174 (14%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQNLKV-----RLDFLSKL 493
+F +GEGS R L AI+ L K++ I+ KV D +S+L
Sbjct: 30 EDFKFGKILGEGSFSTTVLARELATSREYAIKILE--KRHIIKENKVPYVTRERDVMSRL 87
Query: 494 QHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSE--NCPENVLKWSDRLA 551
HP V L QDD K++ Y NG ++ + + E ++
Sbjct: 88 DHPFFVKLY-----FTFQDD---EKLYFGLSYAKNGELLKYIRKIGSFDETCTRF----- 134
Query: 552 ILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEEHEK 605
+ A+ +LH G L NILL+E +++D+G + ++ K
Sbjct: 135 YTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 185
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 75/194 (38%), Gaps = 43/194 (22%)
Query: 144 LQTLTMDTNFFDDNVPDWWDSLSNLTVLSLKSNQLKGQFPSSICR-IATLTDIAMSNNEL 202
+Q L M N P + ++ LTVL L+ N L P I LT ++MSNN L
Sbjct: 95 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNL 153
Query: 203 SGKLPD-MSALTSLHVLDLRENKLDS-GLPLMPKGLVTVLLSRNLFSG-AIPQQFGEL-- 257
D A TSL L L N+L L L+P L +S NL S AIP EL
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP-SLFHANVSYNLLSTLAIPIAVEELDA 212
Query: 258 ------------------AQLQH-----------------LDLSFNDLSGIPPSVLFSLP 282
+LQH +DLS+N+L I +
Sbjct: 213 SHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272
Query: 283 NISYLHLASNMLSG 296
+ L++++N L
Sbjct: 273 RLERLYISNNRLVA 286
>pdb|3QBO|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From
Yersinia Pestis Co92
pdb|3QBO|B Chain B, Crystal Structure Of Phosphoserine Aminotransferase From
Yersinia Pestis Co92
Length = 364
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 41 VSITCQDNSVTGLKIMGDKPVKENTAYNGHPIPNQTLSESFSID 84
+ +T DN +TG++ M + +N AY H PN+T+ + +ID
Sbjct: 122 IDVTTHDNGLTGIQPMKQWKLSDNAAYV-HYCPNETI-DGIAID 163
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 164 SLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNEL-SGKLPDMSALTSLHVLDLRE 222
S L VL L +++ + ++ L+ + ++ N + S L S L+SL L E
Sbjct: 52 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALE 111
Query: 223 NKLDSGLPLMPKGLVTVL----LSRNLF-SGAIPQQFGELAQLQHLDLSFNDLSGI 273
L S L P G + L ++ NL S +P+ F L L+HLDLS N + I
Sbjct: 112 TNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 164 SLSNLTVLSLKSNQLKGQFPSSICRIATLTDIAMSNNEL-SGKLPDMSALTSLHVLDLRE 222
S L VL L +++ + ++ L+ + ++ N + S L S L+SL L E
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 223 NKLDSGLPLMPKGLVTVL----LSRNLF-SGAIPQQFGELAQLQHLDLSFNDLSGI 273
L S L P G + L ++ NL S +P+ F L L+HLDLS N + I
Sbjct: 110 TNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 99/224 (44%), Gaps = 29/224 (12%)
Query: 112 DKIHRLSSLELLDMSSNFLFGAIPSGISRLVRLQTLTMDTN--FFDDNVPDWWDSLSN-- 167
D + L+ +E+ + + +P+ + L Q + + N + + D W +L++
Sbjct: 246 DNLKDLTDVEVYNCPN---LTKLPTFLKALPEXQLINVACNRGISGEQLKDDWQALADAP 302
Query: 168 ----LTVLSLKSNQLKGQFP--SSICRIATLTDIAMSNNELSGKLPDMSALTSLHVLDLR 221
+ ++ + N LK FP +S+ + L + N+L GKLP + L L+L
Sbjct: 303 VGEKIQIIYIGYNNLK-TFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLA 361
Query: 222 ENKLDSGLPLMPKGLVTVLLSRNLFSGA---IPQQFG--ELAQLQHLDLSFNDLSGIPPS 276
N++ + +P G + + + IP F ++ +D S+N++ +
Sbjct: 362 YNQI-TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEIGSVDGK 420
Query: 277 VL-------FSLPNISYLHLASNMLSGTLPKDL-SCGSKLDSIS 312
F N+S ++L++N +S PK+L S GS L SI+
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSIN 463
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 254 FGELAQLQHLDLSFNDLSGIPPSVLFSLPNISYLHLASN 292
F L L+HLDLS N LS + S L ++ YL+L N
Sbjct: 96 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 134
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 80/207 (38%), Gaps = 41/207 (19%)
Query: 115 HRLSSLELLDMSSNFLF----------GAIPSGISRLVRLQTLTMDTNFFD--DNVPDWW 162
L SLE LD+S N + GA PS LQTL + N +
Sbjct: 357 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPS-------LQTLVLSQNHLRSMQKTGEIL 409
Query: 163 DSLSNLTVLSLKSNQL-----KGQFPSSICRIATLTDIAMSNNELSGKLPDMSALTSLHV 217
+L NLT L + N Q+P + R L+ + ++ +L V
Sbjct: 410 LTLKNLTSLDISRNTFHPMPDSCQWPEKM-RFLNLSSTGI-------RVVKTCIPQTLEV 461
Query: 218 LDLRENKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLSGIPPSV 277
LD+ N LDS +P+ L + +SRN +P L + ++ N L +P +
Sbjct: 462 LDVSNNNLDSFSLFLPR-LQELYISRNKLK-TLPDA-SLFPVLLVMKIASNQLKSVPDGI 518
Query: 278 LFSLPNISYLHLASNMLSGTLPKDLSC 304
L ++ + L +N P D SC
Sbjct: 519 FDRLTSLQKIWLHTN------PWDCSC 539
>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1
pdb|3QFV|B Chain B, Mrck Beta In Complex With Tpca-1
Length = 415
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/175 (19%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLS 491
++E++ +F+ + +G G+ G++ +++N I ++ L K+ + LK
Sbjct: 66 VKEMQLHREDFEIIKVIGRGAFGEVAVVKMKNTE--RIYAMKILNKWEM--LKRAETACF 121
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS---ENCPENVLK-WS 547
+ + LV+ I + + N ++LV +Y G LS + PE++ + +
Sbjct: 122 REERDVLVNGDCQWITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDKLPEDMARFYI 181
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE 602
+ + I +H++H + +N+LLD + +L+D+G + M +
Sbjct: 182 GEMVLAIDSIHQLHYVHRDI---------KPDNVLLDVNGHIRLADFGSCLKMND 227
>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil
pdb|3TKU|B Chain B, Mrck Beta In Complex With Fasudil
Length = 433
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/175 (19%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 432 LEELKEATNNFDSLSFMGEGSRGKLYKGRLENGTYVAIRSLTFLKKYSIQNLKVRLDFLS 491
++E++ +F+ + +G G+ G++ +++N I ++ L K+ + LK
Sbjct: 82 VKEMQLHREDFEIIKVIGRGAFGEVAVVKMKNTE--RIYAMKILNKWEM--LKRAETACF 137
Query: 492 KLQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLS---ENCPENVLK-WS 547
+ + LV+ I + + N ++LV +Y G LS + PE++ + +
Sbjct: 138 REERDVLVNGDCQWITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDKLPEDMARFYI 197
Query: 548 DRLAILIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGISIIMEE 602
+ + I +H++H + +N+LLD + +L+D+G + M +
Sbjct: 198 GEMVLAIDSIHQLHYVHRDI---------KPDNVLLDVNGHIRLADFGSCLKMND 243
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 21/165 (12%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQ------NLKVRLDFLSK 492
N+F +G G G++Y R + G A++ L + Q N ++ L +S
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 248
Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAI 552
P +V + S +K+ + + + G HLS++ V +D
Sbjct: 249 GDCPFIVCM--------SYAFHTPDKLSFILDLMNGGDLHYHLSQH---GVFSEADMRFY 297
Query: 553 LIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ + +H+ + L NILLDEH ++SD G++
Sbjct: 298 AAEIILGLEHMHNRFV---VYRDLKPANILLDEHGHVRISDLGLA 339
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 21/165 (12%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQ------NLKVRLDFLSK 492
N+F +G G G++Y R + G A++ L + Q N ++ L +S
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 248
Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAI 552
P +V + S +K+ + + + G HLS++ V +D
Sbjct: 249 GDCPFIVCM--------SYAFHTPDKLSFILDLMNGGDLHYHLSQH---GVFSEADMRFY 297
Query: 553 LIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ + +H+ + L NILLDEH ++SD G++
Sbjct: 298 AAEIILGLEHMHNRFV---VYRDLKPANILLDEHGHVRISDLGLA 339
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 21/165 (12%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQ------NLKVRLDFLSK 492
N+F +G G G++Y R + G A++ L + Q N ++ L +S
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 248
Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAI 552
P +V + S +K+ + + + G HLS++ V +D
Sbjct: 249 GDCPFIVCM--------SYAFHTPDKLSFILDLMNGGDLHYHLSQH---GVFSEADMRFY 297
Query: 553 LIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ + +H+ + L NILLDEH ++SD G++
Sbjct: 298 AAEIILGLEHMHNRFV---VYRDLKPANILLDEHGHVRISDLGLA 339
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 21/165 (12%)
Query: 440 NNFDSLSFMGEGSRGKLYKGR-LENGTYVAIRSLTFLKKYSIQ------NLKVRLDFLSK 492
N+F +G G G++Y R + G A++ L + Q N ++ L +S
Sbjct: 188 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 247
Query: 493 LQHPHLVSLLGHCIESGSQDDSNTNKVFLVYEYIPNGSYRAHLSENCPENVLKWSDRLAI 552
P +V + S +K+ + + + G HLS++ V +D
Sbjct: 248 GDCPFIVCM--------SYAFHTPDKLSFILDLMNGGDLHYHLSQH---GVFSEADMRFY 296
Query: 553 LIGVAKAVHFLHSSVISGSFSNRLTTNNILLDEHRIAKLSDYGIS 597
+ + +H+ + L NILLDEH ++SD G++
Sbjct: 297 AAEIILGLEHMHNRFV---VYRDLKPANILLDEHGHVRISDLGLA 338
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 15/119 (12%)
Query: 166 SNLTVLSLKSNQLKG--QFPSSICRIATLTDIAMSNNELSGKLPDM----SALTSLHVL- 218
S L LS+ NQL PS + ++ + S L L ++ + LTSL VL
Sbjct: 181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLP 240
Query: 219 -DLRE-----NKLDSGLPLMPKGLVTVLLSRNLFSGAIPQQFGELAQLQHLDLSFNDLS 271
+L+E N+L S LP++P GL+++ + RN + +P+ L+ ++L N LS
Sbjct: 241 SELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,185,282
Number of Sequences: 62578
Number of extensions: 812947
Number of successful extensions: 3081
Number of sequences better than 100.0: 663
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 562
Number of HSP's that attempted gapping in prelim test: 2205
Number of HSP's gapped (non-prelim): 914
length of query: 747
length of database: 14,973,337
effective HSP length: 106
effective length of query: 641
effective length of database: 8,340,069
effective search space: 5345984229
effective search space used: 5345984229
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)