BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044237
(212 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2
PE=1 SV=1
Length = 909
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 99 LEILKVYDCQSLLILLPSSSVS---FRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRM 155
LE+L ++ +L + +SVS RN+ I C +L ++ S + L +L + +
Sbjct: 747 LEVLTLHSLHNLTRVW-GNSVSQDCLRNIRCINISHCNKLKNV---SWVQKLPKLEVIEL 802
Query: 156 RECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLDSLTSFCSANYTFK 204
+CR + E++ + ++ +F LK L RDL L S + ++F+
Sbjct: 803 FDCREIEELISEHESPSVEDPTLFPSLKTLRTRDLPELNSILPSRFSFQ 851
>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1
PE=3 SV=2
Length = 885
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 94 PIFQYLEILKVYDCQSLLILLPSS-------SVSFRNLTEIVAFGCKELIHLVTSSTAKT 146
P L + +++C I++ + + +F NL+ + GC L L A
Sbjct: 708 PAIHNLCYISIWNCWMWEIMIEKTPWKKNLTNPNFSNLSNVRIEGCDGLKDLTWLLFAPN 767
Query: 147 LVQLVTVRMRECRAMTEVVINDKEG--VEKEEIVFRKLKMLELRDLDSLTSF 196
L+ L R+ C+ + +++ +K +EKE + F+KL+ L L L L S
Sbjct: 768 LINL---RVWGCKHLEDIISKEKAASVLEKEILPFQKLECLNLYQLSELKSI 816
>sp|A2SPY9|HPRT_METLZ Hypoxanthine/guanine phosphoribosyltransferase
OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM
4855 / Z) GN=hpt PE=3 SV=1
Length = 187
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 118 SVSFRNLTEIV---AFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDKEGVEK 174
S+ +N+ +IV A G IH+ T+ T T + V +R RE R EVVI + G K
Sbjct: 53 SLDLKNVDKIVVSEAMG----IHIGTALTLATGIPFVVIRKREYRLPGEVVIGQETGYSK 108
>sp|Q8BID8|FXL14_MOUSE F-box/LRR-repeat protein 14 OS=Mus musculus GN=Fbxl14 PE=2 SV=1
Length = 400
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 28/149 (18%)
Query: 53 EVFSMEGCLEKHVGKL--AMIKELQLHQHYHLEQLCKQ--DSKLGPIFQYLEILKVYDCQ 108
E ++ GC L A ++E+ + +L LCKQ DS LG I QYL+ L+V +
Sbjct: 93 ESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLS-LCKQITDSSLGRIAQYLKGLEVLE-- 149
Query: 109 SLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVIND 168
L S+++ L ++A+G L +L ++ +R CR +++V I
Sbjct: 150 ----LGGCSNITNTGLL-LIAWG---------------LQRLKSLNLRSCRHLSDVGIGH 189
Query: 169 KEGVEKEEI-VFRKLKMLELRDLDSLTSF 196
G+ + L+ L L+D LT
Sbjct: 190 LAGMTRSAAEGCLGLEQLTLQDCQKLTDL 218
>sp|Q17R01|FXL14_BOVIN F-box/LRR-repeat protein 14 OS=Bos taurus GN=FBXL14 PE=2 SV=1
Length = 400
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 28/149 (18%)
Query: 53 EVFSMEGCLEKHVGKL--AMIKELQLHQHYHLEQLCKQ--DSKLGPIFQYLEILKVYDCQ 108
E ++ GC L A ++E+ + +L LCKQ DS LG I QYL+ L+V +
Sbjct: 93 ESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLS-LCKQITDSSLGRIAQYLKGLEVLE-- 149
Query: 109 SLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVIND 168
L S+++ L ++A+G L +L ++ +R CR +++V I
Sbjct: 150 ----LGGCSNITNTGLL-LIAWG---------------LQRLKSLNLRSCRHLSDVGIGH 189
Query: 169 KEGVEKEEI-VFRKLKMLELRDLDSLTSF 196
G+ + L+ L L+D LT
Sbjct: 190 LAGMTRSAAEGCLGLEQLTLQDCQKLTDL 218
>sp|Q8KG15|RPOB_CHLTE DNA-directed RNA polymerase subunit beta OS=Chlorobium tepidum
(strain ATCC 49652 / DSM 12025 / TLS) GN=rpoB PE=3 SV=1
Length = 1303
Score = 30.8 bits (68), Expect = 7.6, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 87 KQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKT 146
K++ LG QYL + D + ++ ++++ + +IVA G K + + T+S K
Sbjct: 238 KREQLLG---QYLAS-DIIDMTTGEVVPARAAITEEIIDQIVAAGYKTVKVMKTTSPEKG 293
Query: 147 LVQLVTVRMRECRAMTEVVINDKEGVEKE--EIVFRKLKMLELRDLDSLTSFCSANY 201
+ + V + ++ND E+E EIV+ +L+ E D+D+ SF +
Sbjct: 294 VDKSVII---------NTILNDSSATEEEALEIVYEELRSNEAPDIDAARSFLERTF 341
>sp|Q8N1E6|FXL14_HUMAN F-box/LRR-repeat protein 14 OS=Homo sapiens GN=FBXL14 PE=1 SV=1
Length = 418
Score = 30.8 bits (68), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 28/149 (18%)
Query: 53 EVFSMEGCLEKHVGKL--AMIKELQLHQHYHLEQLCKQ--DSKLGPIFQYLEILKVYDCQ 108
E ++ GC L A ++E+ + +L LCKQ DS LG I QYL+ L+V +
Sbjct: 93 ESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLS-LCKQITDSSLGRIAQYLKGLEVLE-- 149
Query: 109 SLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVIND 168
L S+++ L ++A+G L +L ++ +R CR +++V I
Sbjct: 150 ----LGGCSNITNTGLL-LIAWG---------------LQRLKSLNLRSCRHLSDVGIGH 189
Query: 169 KEGVEKEEI-VFRKLKMLELRDLDSLTSF 196
G+ + L+ L L+D LT
Sbjct: 190 LAGMTRSAAEGCLGLEQLTLQDCQKLTDL 218
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,437,934
Number of Sequences: 539616
Number of extensions: 2608951
Number of successful extensions: 7826
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 7822
Number of HSP's gapped (non-prelim): 14
length of query: 212
length of database: 191,569,459
effective HSP length: 112
effective length of query: 100
effective length of database: 131,132,467
effective search space: 13113246700
effective search space used: 13113246700
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)