Query 044237
Match_columns 212
No_of_seqs 204 out of 1299
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 12:47:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.5 4E-13 8.7E-18 127.6 12.2 99 97-199 778-888 (1153)
2 PLN03210 Resistant to P. syrin 99.4 5.8E-13 1.3E-17 126.5 10.8 20 179-198 801-820 (1153)
3 PLN00113 leucine-rich repeat r 99.0 1.1E-09 2.3E-14 103.0 9.0 39 8-48 135-174 (968)
4 PLN00113 leucine-rich repeat r 98.9 2.7E-09 5.9E-14 100.2 8.0 140 11-159 91-247 (968)
5 KOG4658 Apoptotic ATPase [Sign 98.2 1.1E-06 2.4E-11 81.4 4.4 85 121-210 746-833 (889)
6 PRK15386 type III secretion pr 98.2 6E-06 1.3E-10 69.9 8.1 60 12-85 51-110 (426)
7 KOG0617 Ras suppressor protein 98.2 6.4E-08 1.4E-12 72.1 -3.8 151 12-189 32-182 (264)
8 KOG4341 F-box protein containi 98.2 3.2E-08 7E-13 82.3 -6.3 82 124-211 270-351 (483)
9 PRK15386 type III secretion pr 98.1 1.3E-05 2.8E-10 67.9 8.7 100 36-161 50-169 (426)
10 PRK15370 E3 ubiquitin-protein 98.1 4.3E-06 9.4E-11 76.3 6.0 44 7-55 193-236 (754)
11 KOG4658 Apoptotic ATPase [Sign 98.1 1.5E-06 3.2E-11 80.6 2.8 63 12-84 570-633 (889)
12 PRK15370 E3 ubiquitin-protein 98.0 1E-05 2.3E-10 73.9 6.7 37 13-54 178-214 (754)
13 KOG3207 Beta-tubulin folding c 98.0 1.2E-06 2.7E-11 73.5 0.0 164 12-189 145-310 (505)
14 KOG4194 Membrane glycoprotein 97.9 6.5E-06 1.4E-10 71.8 3.2 33 178-212 390-422 (873)
15 PF13855 LRR_8: Leucine rich r 97.9 2.4E-05 5.2E-10 48.4 4.9 58 98-158 2-59 (61)
16 PRK15387 E3 ubiquitin-protein 97.9 9.9E-05 2.2E-09 67.6 9.5 44 6-55 215-258 (788)
17 KOG0444 Cytoskeletal regulator 97.9 1.3E-06 2.8E-11 76.7 -2.4 137 12-158 102-255 (1255)
18 PF13855 LRR_8: Leucine rich r 97.8 5.4E-05 1.2E-09 46.7 5.3 60 69-133 1-60 (61)
19 KOG0444 Cytoskeletal regulator 97.8 2.1E-06 4.6E-11 75.4 -2.3 18 178-195 360-377 (1255)
20 KOG2120 SCF ubiquitin ligase, 97.8 1.7E-06 3.6E-11 69.7 -3.1 87 69-160 286-375 (419)
21 cd00116 LRR_RI Leucine-rich re 97.6 8.9E-05 1.9E-09 60.8 5.3 88 69-159 137-232 (319)
22 cd00116 LRR_RI Leucine-rich re 97.5 3.4E-05 7.3E-10 63.3 0.7 61 97-159 137-204 (319)
23 KOG2120 SCF ubiquitin ligase, 97.3 4.6E-05 9.9E-10 61.6 -0.8 62 121-190 312-373 (419)
24 KOG1947 Leucine rich repeat pr 97.3 3.5E-05 7.5E-10 66.6 -1.8 65 97-161 243-308 (482)
25 PRK15387 E3 ubiquitin-protein 97.3 0.0012 2.6E-08 60.7 8.0 112 13-158 201-312 (788)
26 PF14580 LRR_9: Leucine-rich r 97.2 0.00019 4.1E-09 54.2 2.4 131 13-160 19-152 (175)
27 KOG3207 Beta-tubulin folding c 97.2 6.2E-05 1.3E-09 63.5 -0.9 184 12-212 120-307 (505)
28 KOG3665 ZYG-1-like serine/thre 97.1 0.00016 3.5E-09 65.7 0.5 133 12-157 121-259 (699)
29 KOG0618 Serine/threonine phosp 97.0 5.7E-05 1.2E-09 69.0 -3.2 41 144-192 448-488 (1081)
30 KOG3665 ZYG-1-like serine/thre 97.0 0.00025 5.3E-09 64.5 0.6 119 33-158 79-205 (699)
31 KOG4194 Membrane glycoprotein 96.9 0.0034 7.4E-08 55.4 7.0 137 12-157 77-230 (873)
32 KOG0617 Ras suppressor protein 96.9 6.7E-05 1.5E-09 56.2 -2.9 58 11-78 54-111 (264)
33 KOG0618 Serine/threonine phosp 96.9 0.0003 6.6E-09 64.4 0.6 109 10-135 380-489 (1081)
34 KOG4341 F-box protein containi 96.5 0.0011 2.5E-08 55.8 1.5 143 12-162 293-440 (483)
35 PF12799 LRR_4: Leucine Rich r 96.3 0.0052 1.1E-07 35.3 3.1 39 13-54 1-39 (44)
36 KOG1947 Leucine rich repeat pr 96.2 0.00065 1.4E-08 58.7 -1.7 120 67-194 186-309 (482)
37 PF14580 LRR_9: Leucine-rich r 95.6 0.016 3.4E-07 43.9 3.9 109 11-132 40-150 (175)
38 PLN03150 hypothetical protein; 95.2 0.044 9.6E-07 49.7 6.0 80 15-108 420-501 (623)
39 KOG3864 Uncharacterized conser 95.2 0.0031 6.8E-08 48.3 -1.2 66 95-161 123-189 (221)
40 PF12799 LRR_4: Leucine Rich r 95.1 0.024 5.1E-07 32.5 2.6 14 119-132 21-34 (44)
41 PLN03150 hypothetical protein; 95.0 0.051 1.1E-06 49.3 5.7 63 94-159 439-501 (623)
42 KOG0472 Leucine-rich repeat pr 94.7 0.011 2.3E-07 50.1 0.5 119 23-159 421-539 (565)
43 COG4886 Leucine-rich repeat (L 94.6 0.029 6.3E-07 47.6 3.0 39 14-55 141-179 (394)
44 KOG0472 Leucine-rich repeat pr 94.5 0.011 2.5E-07 50.0 0.3 34 12-47 434-467 (565)
45 KOG3864 Uncharacterized conser 94.4 0.0041 8.9E-08 47.7 -2.4 68 67-136 123-190 (221)
46 KOG0532 Leucine-rich repeat (L 94.3 0.008 1.7E-07 52.8 -1.1 126 12-159 120-245 (722)
47 KOG1644 U2-associated snRNP A' 92.6 0.21 4.5E-06 38.6 4.2 87 36-132 62-150 (233)
48 KOG1259 Nischarin, modulator o 92.4 0.022 4.7E-07 46.6 -1.3 14 178-191 397-410 (490)
49 PF13504 LRR_7: Leucine rich r 92.0 0.11 2.5E-06 23.2 1.4 11 149-159 2-12 (17)
50 PF13306 LRR_5: Leucine rich r 91.7 1.5 3.2E-05 30.5 7.7 81 35-130 9-89 (129)
51 KOG2739 Leucine-rich acidic nu 90.7 0.08 1.7E-06 42.1 0.2 113 11-134 41-155 (260)
52 COG4886 Leucine-rich repeat (L 90.5 0.21 4.5E-06 42.4 2.6 129 8-157 158-286 (394)
53 KOG2982 Uncharacterized conser 90.5 0.16 3.4E-06 41.7 1.7 41 12-53 70-111 (418)
54 KOG1259 Nischarin, modulator o 90.4 0.064 1.4E-06 44.0 -0.6 12 67-78 305-316 (490)
55 KOG2123 Uncharacterized conser 89.7 0.052 1.1E-06 44.0 -1.6 38 12-53 18-55 (388)
56 smart00367 LRR_CC Leucine-rich 86.0 0.56 1.2E-05 23.3 1.4 16 180-195 2-17 (26)
57 KOG2739 Leucine-rich acidic nu 83.1 0.85 1.8E-05 36.4 2.0 115 36-163 41-158 (260)
58 PF00560 LRR_1: Leucine Rich R 82.3 1 2.2E-05 21.3 1.4 17 181-198 1-17 (22)
59 KOG4237 Extracellular matrix p 82.1 1 2.2E-05 38.4 2.2 96 22-130 259-354 (498)
60 PF13306 LRR_5: Leucine rich r 79.8 13 0.00028 25.6 7.1 101 12-130 11-111 (129)
61 KOG1644 U2-associated snRNP A' 78.4 3.7 8.1E-05 31.9 4.0 88 67-160 62-152 (233)
62 KOG4237 Extracellular matrix p 74.6 0.74 1.6E-05 39.2 -0.7 71 7-85 61-131 (498)
63 smart00369 LRR_TYP Leucine-ric 74.2 2.9 6.2E-05 20.4 1.7 19 13-31 2-20 (26)
64 smart00370 LRR Leucine-rich re 74.2 2.9 6.2E-05 20.4 1.7 19 13-31 2-20 (26)
65 KOG2982 Uncharacterized conser 74.1 2.3 5E-05 35.1 2.0 32 11-47 95-130 (418)
66 KOG1859 Leucine-rich repeat pr 71.8 0.2 4.3E-06 45.8 -4.9 14 34-47 183-196 (1096)
67 KOG0532 Leucine-rich repeat (L 68.7 0.88 1.9E-05 40.6 -1.6 42 12-56 142-183 (722)
68 KOG0531 Protein phosphatase 1, 67.9 3.2 7E-05 35.6 1.7 40 11-53 93-132 (414)
69 KOG4579 Leucine-rich repeat (L 67.5 1.3 2.8E-05 32.4 -0.7 55 15-78 55-109 (177)
70 PF13516 LRR_6: Leucine Rich r 55.6 5.9 0.00013 18.9 0.7 11 38-48 2-12 (24)
71 KOG2123 Uncharacterized conser 48.6 1.5 3.3E-05 35.8 -3.3 67 3-78 27-97 (388)
72 KOG0531 Protein phosphatase 1, 46.9 10 0.00022 32.6 1.2 41 10-54 115-155 (414)
73 smart00364 LRR_BAC Leucine-ric 44.0 14 0.0003 18.5 1.0 18 13-30 2-19 (26)
74 KOG1859 Leucine-rich repeat pr 42.0 6.2 0.00013 36.7 -0.9 33 12-47 186-218 (1096)
75 KOG1909 Ran GTPase-activating 37.9 23 0.0005 29.9 1.9 115 11-133 183-309 (382)
76 smart00365 LRR_SD22 Leucine-ri 28.4 53 0.0011 16.3 1.6 10 38-47 2-11 (26)
77 COG1768 Predicted phosphohydro 25.0 25 0.00054 26.8 0.1 25 187-211 69-93 (230)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.47 E-value=4e-13 Score=127.57 Aligned_cols=99 Identities=23% Similarity=0.274 Sum_probs=63.0
Q ss_pred CcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccccccc-------
Q 044237 97 QYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDK------- 169 (212)
Q Consensus 97 ~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~------- 169 (212)
++|+.|++++|+.+..+ |.....+++|+.|++++|.+++.++.. .++++|+.|++++|..+..++....
T Consensus 778 ~sL~~L~Ls~n~~l~~l-P~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~L 853 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVEL-PSSIQNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRTFPDISTNISDLNL 853 (1153)
T ss_pred ccchheeCCCCCCcccc-ChhhhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCccccccccccccCEeEC
Confidence 35666666666665554 333667788888888888888776432 2677888888888877765432110
Q ss_pred --cccc---cccccCCccceeecCCCCCCceecCC
Q 044237 170 --EGVE---KEEIVFRKLKMLELRDLDSLTSFCSA 199 (212)
Q Consensus 170 --~~~~---~~~~~~p~L~~L~l~~cp~L~~~~~~ 199 (212)
.+.. .....+++|+.|.+.+|++|++++..
T Consensus 854 s~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~ 888 (1153)
T PLN03210 854 SRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN 888 (1153)
T ss_pred CCCCCccChHHHhcCCCCCEEECCCCCCcCccCcc
Confidence 0000 11235778888888888888877653
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.44 E-value=5.8e-13 Score=126.50 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=10.0
Q ss_pred CCccceeecCCCCCCceecC
Q 044237 179 FRKLKMLELRDLDSLTSFCS 198 (212)
Q Consensus 179 ~p~L~~L~l~~cp~L~~~~~ 198 (212)
+++|+.|.+.+|++|+.++.
T Consensus 801 L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 801 LHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred CCCCCEEECCCCCCcCeeCC
Confidence 44455555555555554443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.01 E-value=1.1e-09 Score=102.98 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=17.9
Q ss_pred CccccCCccEEEEcCCC-CceechHHHHhhcCCCcEEEEeec
Q 044237 8 PQHLFGSLKQLNIGGDD-SACFPIWNVLERFHSLEILILCYF 48 (212)
Q Consensus 8 p~~~l~~Lk~L~l~~~~-~~~~p~~~~~~~l~~L~~L~i~~C 48 (212)
|.+.+++|++|+++++. ...+|.. ++.+++|++|++++|
T Consensus 135 p~~~l~~L~~L~Ls~n~~~~~~p~~--~~~l~~L~~L~L~~n 174 (968)
T PLN00113 135 PRGSIPNLETLDLSNNMLSGEIPND--IGSFSSLKVLDLGGN 174 (968)
T ss_pred CccccCCCCEEECcCCcccccCChH--HhcCCCCCEEECccC
Confidence 33444555555555222 2233432 335555555555554
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.92 E-value=2.7e-09 Score=100.23 Aligned_cols=140 Identities=14% Similarity=0.092 Sum_probs=70.3
Q ss_pred ccCCccEEEEcCCC-CceechHHHHhhcCCCcEEEEeecCCcceecccccc----------------ccccccccccccE
Q 044237 11 LFGSLKQLNIGGDD-SACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGC----------------LEKHVGKLAMIKE 73 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~-~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~----------------~~~~~~~l~~L~~ 73 (212)
.+++|+.|+++++. ...+|.. ....+++|++|+++++ ++...++.... .......+++|++
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~-~~~~l~~L~~L~Ls~n-~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDD-IFTTSSSLRYLNLSNN-NFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCCCEEECCCCccCCcCChH-HhccCCCCCEEECcCC-ccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 47889999998433 3467776 5568888899888875 33322211000 0001123555666
Q ss_pred EecCcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEE
Q 044237 74 LQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTV 153 (212)
Q Consensus 74 L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L 153 (212)
|+++++.-...+ +.....+++|++|++++|.-... .|.....+++|+.|+++++.-...+ +.....+++|++|
T Consensus 169 L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L 241 (968)
T PLN00113 169 LDLGGNVLVGKI----PNSLTNLTSLEFLTLASNQLVGQ-IPRELGQMKSLKWIYLGYNNLSGEI--PYEIGGLTSLNHL 241 (968)
T ss_pred EECccCcccccC----ChhhhhCcCCCeeeccCCCCcCc-CChHHcCcCCccEEECcCCccCCcC--ChhHhcCCCCCEE
Confidence 666554211111 11123455666666666543222 2322445556666666555322111 1233455666666
Q ss_pred eeeccc
Q 044237 154 RMRECR 159 (212)
Q Consensus 154 ~i~~c~ 159 (212)
++.+|.
T Consensus 242 ~L~~n~ 247 (968)
T PLN00113 242 DLVYNN 247 (968)
T ss_pred ECcCce
Confidence 665553
No 5
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.23 E-value=1.1e-06 Score=81.43 Aligned_cols=85 Identities=24% Similarity=0.353 Sum_probs=49.8
Q ss_pred CCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecccccccccccccccccc--ccccCCcccee-ecCCCCCCceec
Q 044237 121 FRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDKEGVEK--EEIVFRKLKML-ELRDLDSLTSFC 197 (212)
Q Consensus 121 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~--~~~~~p~L~~L-~l~~cp~L~~~~ 197 (212)
|+++..+.+.+|..++.+.+ ..-.++|+.|++.+|+.++.++..++..... ....|.++..+ .+.+.+.+++++
T Consensus 746 f~~l~~~~~~~~~~~r~l~~---~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~ 822 (889)
T KOG4658|consen 746 FPNLSKVSILNCHMLRDLTW---LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLY 822 (889)
T ss_pred HHHHHHHHhhccccccccch---hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeE
Confidence 44444445555554444322 2345899999999999999887654321111 12356666666 477777777776
Q ss_pred CCCccccCCCCcc
Q 044237 198 SANYTFKFPSLQD 210 (212)
Q Consensus 198 ~~~~~~~~p~L~~ 210 (212)
.. +.++|+|+.
T Consensus 823 ~~--~l~~~~l~~ 833 (889)
T KOG4658|consen 823 WL--PLSFLKLEE 833 (889)
T ss_pred ec--ccCccchhh
Confidence 63 344555443
No 6
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.21 E-value=6e-06 Score=69.91 Aligned_cols=60 Identities=12% Similarity=0.048 Sum_probs=29.3
Q ss_pred cCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 12 FGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
+.++++|+++...++.+|. --++|++|.|++|.+++.++.. ..++|++|.+.+|.++..+
T Consensus 51 ~~~l~~L~Is~c~L~sLP~-----LP~sLtsL~Lsnc~nLtsLP~~---------LP~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV-----LPNELTEITIENCNNLTTLPGS---------IPEGLEKLTVCHCPEISGL 110 (426)
T ss_pred hcCCCEEEeCCCCCcccCC-----CCCCCcEEEccCCCCcccCCch---------hhhhhhheEccCccccccc
Confidence 3555666665224444441 1234666666666555443320 1235666666666555443
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.18 E-value=6.4e-08 Score=72.05 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=99.5
Q ss_pred cCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCc
Q 044237 12 FGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSK 91 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~ 91 (212)
+.+...|.++.++++..|+. ++ .+.+|+.|++.+ ..+++++.... .+++|+.|.+. +..|..++ .
T Consensus 32 ~s~ITrLtLSHNKl~~vppn-ia-~l~nlevln~~n-nqie~lp~~is-------sl~klr~lnvg-mnrl~~lp----r 96 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPN-IA-ELKNLEVLNLSN-NQIEELPTSIS-------SLPKLRILNVG-MNRLNILP----R 96 (264)
T ss_pred hhhhhhhhcccCceeecCCc-HH-Hhhhhhhhhccc-chhhhcChhhh-------hchhhhheecc-hhhhhcCc----c
Confidence 56677778887788888887 54 899999999988 67777665322 57888888875 44555543 2
Q ss_pred cCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccccccccc
Q 044237 92 LGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDKEG 171 (212)
Q Consensus 92 ~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 171 (212)
..+.|+.|+.|++.+-.--+...|+....+..|+.|++.+.+ .+.+++ ..+.+.+|+.|.+++-+-+. ++.
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~--dvg~lt~lqil~lrdndll~-lpk----- 167 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPP--DVGKLTNLQILSLRDNDLLS-LPK----- 167 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCCh--hhhhhcceeEEeeccCchhh-CcH-----
Confidence 346889999999887544444455545556667777777654 333332 45677888888887765442 221
Q ss_pred cccccccCCccceeecCC
Q 044237 172 VEKEEIVFRKLKMLELRD 189 (212)
Q Consensus 172 ~~~~~~~~p~L~~L~l~~ 189 (212)
+...+.+|++|+|.+
T Consensus 168 ---eig~lt~lrelhiqg 182 (264)
T KOG0617|consen 168 ---EIGDLTRLRELHIQG 182 (264)
T ss_pred ---HHHHHHHHHHHhccc
Confidence 112466777777765
No 8
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.16 E-value=3.2e-08 Score=82.35 Aligned_cols=82 Identities=17% Similarity=0.152 Sum_probs=47.9
Q ss_pred CCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccccccccccccccccCCccceeecCCCCCCceecCCCccc
Q 044237 124 LTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLDSLTSFCSANYTF 203 (212)
Q Consensus 124 L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~L~~~~~~~~~~ 203 (212)
+..+++..|..+++........++.+|+.|..++|.++...+... -...-++|+.|.+..|..+....-...+.
T Consensus 270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a------Lg~~~~~L~~l~l~~c~~fsd~~ft~l~r 343 (483)
T KOG4341|consen 270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWA------LGQHCHNLQVLELSGCQQFSDRGFTMLGR 343 (483)
T ss_pred hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHH------HhcCCCceEEEeccccchhhhhhhhhhhc
Confidence 334444466655554322234456677777777776653321110 01145788888888888877766655566
Q ss_pred cCCCCccC
Q 044237 204 KFPSLQDL 211 (212)
Q Consensus 204 ~~p~L~~l 211 (212)
.||.|+.+
T Consensus 344 n~~~Le~l 351 (483)
T KOG4341|consen 344 NCPHLERL 351 (483)
T ss_pred CChhhhhh
Confidence 67777765
No 9
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.14 E-value=1.3e-05 Score=67.94 Aligned_cols=100 Identities=17% Similarity=0.188 Sum_probs=66.8
Q ss_pred hcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccccCC
Q 044237 36 RFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLP 115 (212)
Q Consensus 36 ~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~ 115 (212)
.++++++|+|++| +++.++. ..++|++|.+.+|.+|+.+.. ...++|++|.+.+|.++..+ |
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~----------LP~sLtsL~Lsnc~nLtsLP~------~LP~nLe~L~Ls~Cs~L~sL-P 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV----------LPNELTEITIENCNNLTTLPG------SIPEGLEKLTVCHCPEISGL-P 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC----------CCCCCcEEEccCCCCcccCCc------hhhhhhhheEccCccccccc-c
Confidence 5789999999998 7776652 345799999999999987742 12468999999999887764 3
Q ss_pred CCcccCCCCCeEEEcC--CCCCceecchhhHh-----------------cC-CCCcEEeeeccccc
Q 044237 116 SSSVSFRNLTEIVAFG--CKELIHLVTSSTAK-----------------TL-VQLVTVRMRECRAM 161 (212)
Q Consensus 116 ~~~~~l~~L~~L~i~~--C~~L~~l~~~~~~~-----------------~l-~~L~~L~i~~c~~l 161 (212)
. +|+.|.+.. |..+..++. ... .+ ++|++|.|.+|..+
T Consensus 112 ~------sLe~L~L~~n~~~~L~~LPs--sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 112 E------SVRSLEIKGSATDSIKNVPN--GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred c------ccceEEeCCCCCcccccCcc--hHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence 2 455555542 333443321 111 11 46888999888865
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.13 E-value=4.3e-06 Score=76.35 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=28.0
Q ss_pred CCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceec
Q 044237 7 FPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVF 55 (212)
Q Consensus 7 ~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~ 55 (212)
+|....++|+.|++.++.++.+|.. ...+|++|++++| +++.++
T Consensus 193 LP~~Ip~~L~~L~Ls~N~LtsLP~~----l~~nL~~L~Ls~N-~LtsLP 236 (754)
T PRK15370 193 IPACIPEQITTLILDNNELKSLPEN----LQGNIKTLYANSN-QLTSIP 236 (754)
T ss_pred CCcccccCCcEEEecCCCCCcCChh----hccCCCEEECCCC-ccccCC
Confidence 4444445778888876667777765 2357777777764 555443
No 11
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.12 E-value=1.5e-06 Score=80.62 Aligned_cols=63 Identities=21% Similarity=0.162 Sum_probs=38.1
Q ss_pred cCCccEEEEc-CCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCccccccc
Q 044237 12 FGSLKQLNIG-GDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQ 84 (212)
Q Consensus 12 l~~Lk~L~l~-~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~ 84 (212)
++.|++|+++ +..+..+|.. ++.|-+|++|++++ ..+..++..-+ .+..|.+|++.....+.+
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~--I~~Li~LryL~L~~-t~I~~LP~~l~-------~Lk~L~~Lnl~~~~~l~~ 633 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSS--IGELVHLRYLDLSD-TGISHLPSGLG-------NLKKLIYLNLEVTGRLES 633 (889)
T ss_pred CcceEEEECCCCCccCcCChH--HhhhhhhhcccccC-CCccccchHHH-------HHHhhheecccccccccc
Confidence 6667777777 6667777765 45777777777776 45655544222 455566666655444443
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.04 E-value=1e-05 Score=73.91 Aligned_cols=37 Identities=14% Similarity=0.066 Sum_probs=19.2
Q ss_pred CCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCccee
Q 044237 13 GSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEV 54 (212)
Q Consensus 13 ~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i 54 (212)
.+...|++....++.+|.. + .++|+.|+++++ +++.+
T Consensus 178 ~~~~~L~L~~~~LtsLP~~-I---p~~L~~L~Ls~N-~LtsL 214 (754)
T PRK15370 178 NNKTELRLKILGLTTIPAC-I---PEQITTLILDNN-ELKSL 214 (754)
T ss_pred cCceEEEeCCCCcCcCCcc-c---ccCCcEEEecCC-CCCcC
Confidence 3455566654455555543 2 245666666553 45443
No 13
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=1.2e-06 Score=73.46 Aligned_cols=164 Identities=19% Similarity=0.200 Sum_probs=83.1
Q ss_pred cCCccEEEEcCCCCce-echHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 12 FGSLKQLNIGGDDSAC-FPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~-~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
++++++|+++.+.... +|...++++||+|+.|+++. ..+...... .....+++||.|.++.|. |. |....
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s-----~~~~~l~~lK~L~l~~CG-ls--~k~V~ 215 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISS-----NTTLLLSHLKQLVLNSCG-LS--WKDVQ 215 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhccccc-ccccCCccc-----cchhhhhhhheEEeccCC-CC--HHHHH
Confidence 6677777777433332 23222456777777777765 344321111 011246777777777763 33 22112
Q ss_pred ccCCCcCcccEEEEecCcccc-ccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccccccc
Q 044237 91 KLGPIFQYLEILKVYDCQSLL-ILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDK 169 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~-~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 169 (212)
+....||+|+.|.+.+-.... ...+ ...+..|+.|++++..-+ ++........++.|+.|.+.+|.- .++-..+.
T Consensus 216 ~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi-~si~~~d~ 291 (505)
T KOG3207|consen 216 WILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGI-ASIAEPDV 291 (505)
T ss_pred HHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCc-chhcCCCc
Confidence 222356667777666653211 1111 234566777777766533 332223456677777777777642 22211111
Q ss_pred cccccccccCCccceeecCC
Q 044237 170 EGVEKEEIVFRKLKMLELRD 189 (212)
Q Consensus 170 ~~~~~~~~~~p~L~~L~l~~ 189 (212)
+.......||+|+.|.+..
T Consensus 292 -~s~~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 292 -ESLDKTHTFPKLEYLNISE 310 (505)
T ss_pred -cchhhhcccccceeeeccc
Confidence 1111234688888887654
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.94 E-value=6.5e-06 Score=71.78 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=22.5
Q ss_pred cCCccceeecCCCCCCceecCCCccccCCCCccCC
Q 044237 178 VFRKLKMLELRDLDSLTSFCSANYTFKFPSLQDLW 212 (212)
Q Consensus 178 ~~p~L~~L~l~~cp~L~~~~~~~~~~~~p~L~~l~ 212 (212)
.+|+|++|.+.+ .+|++++... ...++.||+|+
T Consensus 390 gl~~LrkL~l~g-Nqlk~I~krA-fsgl~~LE~Ld 422 (873)
T KOG4194|consen 390 GLPSLRKLRLTG-NQLKSIPKRA-FSGLEALEHLD 422 (873)
T ss_pred cchhhhheeecC-ceeeecchhh-hccCcccceec
Confidence 478888888875 4677777653 23467777764
No 15
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.93 E-value=2.4e-05 Score=48.38 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=25.7
Q ss_pred cccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecc
Q 044237 98 YLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMREC 158 (212)
Q Consensus 98 ~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c 158 (212)
+|++|++++| +++.+.+.....+++|++|+++++ +++.+.+ ....++++|++|++.++
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPP-DAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEET-TTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCH-HHHcCCCCCCEEeCcCC
Confidence 3444444444 444433333344555555555533 2333322 23344555555555444
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.85 E-value=9.9e-05 Score=67.63 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=27.6
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceec
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVF 55 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~ 55 (212)
.+|....++|+.|.+..+.++.+|. ..++|++|+++++ +++.++
T Consensus 215 sLP~~l~~~L~~L~L~~N~Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP 258 (788)
T PRK15387 215 TLPDCLPAHITTLVIPDNNLTSLPA-----LPPELRTLEVSGN-QLTSLP 258 (788)
T ss_pred cCCcchhcCCCEEEccCCcCCCCCC-----CCCCCcEEEecCC-ccCccc
Confidence 3455555677777777656666664 3467777777763 665543
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.85 E-value=1.3e-06 Score=76.71 Aligned_cols=137 Identities=18% Similarity=0.191 Sum_probs=83.0
Q ss_pred cCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccc--------cc--cc-------cccccccccEE
Q 044237 12 FGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEG--------CL--EK-------HVGKLAMIKEL 74 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~--------~~--~~-------~~~~l~~L~~L 74 (212)
+..|..|+++.+.+...|.. +..-.++-.|++++ .+++.|+...- ++ .+ ..+.+.+|+.|
T Consensus 102 l~dLt~lDLShNqL~EvP~~--LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLREVPTN--LEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTL 178 (1255)
T ss_pred cccceeeecchhhhhhcchh--hhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhh
Confidence 55677777776666666764 34667777788777 56766654210 00 00 01245677777
Q ss_pred ecCcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEe
Q 044237 75 QLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVR 154 (212)
Q Consensus 75 ~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~ 154 (212)
.+++-|- ..+ . ....+.+++|+.|++++-..-.+-+|.++..++||..++++ |++|..++ ...-.+++|+.|.
T Consensus 179 ~Ls~NPL-~hf-Q--LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS-~N~Lp~vP--ecly~l~~LrrLN 251 (1255)
T KOG0444|consen 179 KLSNNPL-NHF-Q--LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS-ENNLPIVP--ECLYKLRNLRRLN 251 (1255)
T ss_pred hcCCChh-hHH-H--HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc-ccCCCcch--HHHhhhhhhheec
Confidence 7776441 110 0 01125678888888887654333345557788999998886 44565542 3456778899998
Q ss_pred eecc
Q 044237 155 MREC 158 (212)
Q Consensus 155 i~~c 158 (212)
+++-
T Consensus 252 LS~N 255 (1255)
T KOG0444|consen 252 LSGN 255 (1255)
T ss_pred cCcC
Confidence 8874
No 18
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.83 E-value=5.4e-05 Score=46.75 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=31.1
Q ss_pred ccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCC
Q 044237 69 AMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCK 133 (212)
Q Consensus 69 ~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~ 133 (212)
|+|++|.++++ +++.+..+ ....+++|++|++++ ..++.+.+.....+++|++|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~---~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPD---SFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTT---TTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHH---HHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34555555554 45544221 123455566666663 34444444445566677777776653
No 19
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.78 E-value=2.1e-06 Score=75.41 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=13.8
Q ss_pred cCCccceeecCCCCCCce
Q 044237 178 VFRKLKMLELRDLDSLTS 195 (212)
Q Consensus 178 ~~p~L~~L~l~~cp~L~~ 195 (212)
.+|-|+.|++++-|+|.-
T Consensus 360 lL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 360 LLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred hcCCcceeeccCCcCccC
Confidence 467888888888888873
No 20
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1.7e-06 Score=69.71 Aligned_cols=87 Identities=18% Similarity=0.160 Sum_probs=50.9
Q ss_pred ccccEEecCcccccccccccCC-ccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchh--hHh
Q 044237 69 AMIKELQLHQHYHLEQLCKQDS-KLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSS--TAK 145 (212)
Q Consensus 69 ~~L~~L~l~~~~~L~~l~~~~~-~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~--~~~ 145 (212)
++|+.|.++|+.+ .+..... ......++|.+|++++|..++.-.......|+.|++|.++.|..+- +.. ..+
T Consensus 286 e~l~~LNlsG~rr--nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~---p~~~~~l~ 360 (419)
T KOG2120|consen 286 ETLTQLNLSGYRR--NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII---PETLLELN 360 (419)
T ss_pred hhhhhhhhhhhHh--hhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC---hHHeeeec
Confidence 4666666666542 1111100 0123567888888888887765222224567888888888887542 111 135
Q ss_pred cCCCCcEEeeecccc
Q 044237 146 TLVQLVTVRMRECRA 160 (212)
Q Consensus 146 ~l~~L~~L~i~~c~~ 160 (212)
+.|+|.+|++.+|-.
T Consensus 361 s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 361 SKPSLVYLDVFGCVS 375 (419)
T ss_pred cCcceEEEEeccccC
Confidence 667888888888743
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.64 E-value=8.9e-05 Score=60.78 Aligned_cols=88 Identities=16% Similarity=0.019 Sum_probs=37.8
Q ss_pred ccccEEecCccccccccccc-CCccCCCcCcccEEEEecCcccc----ccCCCCcccCCCCCeEEEcCCCCCceecc---
Q 044237 69 AMIKELQLHQHYHLEQLCKQ-DSKLGPIFQYLEILKVYDCQSLL----ILLPSSSVSFRNLTEIVAFGCKELIHLVT--- 140 (212)
Q Consensus 69 ~~L~~L~l~~~~~L~~l~~~-~~~~~~~l~~L~~L~i~~C~~L~----~l~~~~~~~l~~L~~L~i~~C~~L~~l~~--- 140 (212)
++|++|++++|. ++.-... .......+++|++|++++|.--. .+.. ....+++|+.|++++|. +.....
T Consensus 137 ~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~-i~~~~~~~l 213 (319)
T cd00116 137 PALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE-GLKANCNLEVLDLNNNG-LTDEGASAL 213 (319)
T ss_pred CCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH-HHHhCCCCCEEeccCCc-cChHHHHHH
Confidence 566777776653 2210000 00001233456666666653110 1101 12234567777776663 221100
Q ss_pred hhhHhcCCCCcEEeeeccc
Q 044237 141 SSTAKTLVQLVTVRMRECR 159 (212)
Q Consensus 141 ~~~~~~l~~L~~L~i~~c~ 159 (212)
......+++|++|++++|.
T Consensus 214 ~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 214 AETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHhcccCCCCEEecCCCc
Confidence 0122345666666666653
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.48 E-value=3.4e-05 Score=63.29 Aligned_cols=61 Identities=15% Similarity=0.000 Sum_probs=28.6
Q ss_pred CcccEEEEecCcccc----ccCCCCcccCCCCCeEEEcCCCCCceecchh---hHhcCCCCcEEeeeccc
Q 044237 97 QYLEILKVYDCQSLL----ILLPSSSVSFRNLTEIVAFGCKELIHLVTSS---TAKTLVQLVTVRMRECR 159 (212)
Q Consensus 97 ~~L~~L~i~~C~~L~----~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~---~~~~l~~L~~L~i~~c~ 159 (212)
++|+.|++++|.--. .+ .......++|+.|++.+|. +....... ....+++|++|++++|.
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEAL-AKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred CCceEEEcCCCcCCchHHHHH-HHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 566666666664210 11 1012234566777776654 22100001 12234577777777764
No 23
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=4.6e-05 Score=61.60 Aligned_cols=62 Identities=13% Similarity=0.002 Sum_probs=31.1
Q ss_pred CCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccccccccccccccccCCccceeecCCC
Q 044237 121 FRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDL 190 (212)
Q Consensus 121 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~c 190 (212)
.|+|..|++++|..|+.- -......++-|++|.++.|-.+.- .. -......|+|.+|.+.+|
T Consensus 312 cp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~p---~~----~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDIIP---ET----LLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCCh---HH----eeeeccCcceEEEEeccc
Confidence 466666666666655541 111234456666666666654410 00 001124567777766654
No 24
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.25 E-value=3.5e-05 Score=66.63 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=29.5
Q ss_pred CcccEEEEecCccccccCCCCc-ccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccc
Q 044237 97 QYLEILKVYDCQSLLILLPSSS-VSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAM 161 (212)
Q Consensus 97 ~~L~~L~i~~C~~L~~l~~~~~-~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l 161 (212)
.+|+.|.+++|..+.+..-..+ ...++|+.|.+.+|..++...-...+..+++|++|++.+|..+
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 4555555555554333210001 1134555555555555443332333445555555555555554
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.25 E-value=0.0012 Score=60.70 Aligned_cols=112 Identities=17% Similarity=0.185 Sum_probs=67.8
Q ss_pred CCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCcc
Q 044237 13 GSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKL 92 (212)
Q Consensus 13 ~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~ 92 (212)
.+-..|+++...++.+|.. +. ++|+.|.+.+ .+++.++. .+++|++|.+++. +|+.++.
T Consensus 201 ~~~~~LdLs~~~LtsLP~~-l~---~~L~~L~L~~-N~Lt~LP~----------lp~~Lk~LdLs~N-~LtsLP~----- 259 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDC-LP---AHITTLVIPD-NNLTSLPA----------LPPELRTLEVSGN-QLTSLPV----- 259 (788)
T ss_pred CCCcEEEcCCCCCCcCCcc-hh---cCCCEEEccC-CcCCCCCC----------CCCCCcEEEecCC-ccCcccC-----
Confidence 3466788886677788876 32 5899999988 57776543 3578999999875 6776632
Q ss_pred CCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecc
Q 044237 93 GPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMREC 158 (212)
Q Consensus 93 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c 158 (212)
..++|+.|++.++. ++.+ |. .+.+|+.|+++++ +++.++. ..++|+.|+++++
T Consensus 260 --lp~sL~~L~Ls~N~-L~~L-p~---lp~~L~~L~Ls~N-~Lt~LP~-----~p~~L~~LdLS~N 312 (788)
T PRK15387 260 --LPPGLLELSIFSNP-LTHL-PA---LPSGLCKLWIFGN-QLTSLPV-----LPPGLQELSVSDN 312 (788)
T ss_pred --cccccceeeccCCc-hhhh-hh---chhhcCEEECcCC-ccccccc-----cccccceeECCCC
Confidence 23567777776653 4432 21 1245556666554 2333311 2345555555554
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.25 E-value=0.00019 Score=54.22 Aligned_cols=131 Identities=18% Similarity=0.155 Sum_probs=33.8
Q ss_pred CCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCcc
Q 044237 13 GSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKL 92 (212)
Q Consensus 13 ~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~ 92 (212)
.++++|++.++.+..+.. ....+.+|+.|+++++ .++.+.. ...+++|++|.+++= .++++.. ..
T Consensus 19 ~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~~--------l~~L~~L~~L~L~~N-~I~~i~~---~l 83 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLEG--------LPGLPRLKTLDLSNN-RISSISE---GL 83 (175)
T ss_dssp -----------------S----TT-TT--EEE-TTS---S--TT------------TT--EEE--SS----S-CH---HH
T ss_pred cccccccccccccccccc--hhhhhcCCCEEECCCC-CCccccC--------ccChhhhhhcccCCC-CCCcccc---ch
Confidence 346666666555555432 2224666777777664 4444321 113566666666642 2333311 00
Q ss_pred CCCcCcccEEEEecCc--cccccCCCCcccCCCCCeEEEcCCCCCcee-cchhhHhcCCCCcEEeeecccc
Q 044237 93 GPIFQYLEILKVYDCQ--SLLILLPSSSVSFRNLTEIVAFGCKELIHL-VTSSTAKTLVQLVTVRMRECRA 160 (212)
Q Consensus 93 ~~~l~~L~~L~i~~C~--~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l-~~~~~~~~l~~L~~L~i~~c~~ 160 (212)
...+++|++|++++-. .+..+.+ +..+++|+.|++.+.+--..- ........+|+|+.|+-.....
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~--L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEP--LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGG--GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred HHhCCcCCEEECcCCcCCChHHhHH--HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccH
Confidence 0135666666655421 1111111 345666666666654411110 0111334556666665554433
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=6.2e-05 Score=63.52 Aligned_cols=184 Identities=14% Similarity=0.133 Sum_probs=95.5
Q ss_pred cCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCc
Q 044237 12 FGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSK 91 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~ 91 (212)
+.+|+...+..+.....+..+..+.+++++.|+++. .=+...++... -...+|+|+.|.++.- +|...+...
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~-NL~~nw~~v~~----i~eqLp~Le~LNls~N-rl~~~~~s~-- 191 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSR-NLFHNWFPVLK----IAEQLPSLENLNLSSN-RLSNFISSN-- 191 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchh-hhHHhHHHHHH----HHHhcccchhcccccc-cccCCcccc--
Confidence 455555555533333322211445666777766665 11111111100 0125777777777752 233332211
Q ss_pred cCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccccccccc
Q 044237 92 LGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDKEG 171 (212)
Q Consensus 92 ~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 171 (212)
....+++|+.|.++.|.--..-....+..||+|+.|++.+...+... ......+..|++|++++-..+..--
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~--~~~~~i~~~L~~LdLs~N~li~~~~------ 263 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK--ATSTKILQTLQELDLSNNNLIDFDQ------ 263 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee--cchhhhhhHHhhccccCCccccccc------
Confidence 12367788888888885321100111456888888888776422111 1123445678888888866553210
Q ss_pred cccccccCCccceeecCCC--CCCceecCC--CccccCCCCccCC
Q 044237 172 VEKEEIVFRKLKMLELRDL--DSLTSFCSA--NYTFKFPSLQDLW 212 (212)
Q Consensus 172 ~~~~~~~~p~L~~L~l~~c--p~L~~~~~~--~~~~~~p~L~~l~ 212 (212)
.....+||.|+.|.+.++ +.+....-+ ...-.||+|+.|.
T Consensus 264 -~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~ 307 (505)
T KOG3207|consen 264 -GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLN 307 (505)
T ss_pred -ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeee
Confidence 012347899998887766 555533221 1235689998763
No 28
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.07 E-value=0.00016 Score=65.68 Aligned_cols=133 Identities=13% Similarity=0.095 Sum_probs=70.2
Q ss_pred cCCccEEEEcCC--CCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccC
Q 044237 12 FGSLKQLNIGGD--DSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQD 89 (212)
Q Consensus 12 l~~Lk~L~l~~~--~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~ 89 (212)
=.+|++|+|.+. .....|.. ....||+|+.|.|.+ ..+.. .+.. .....||+|..|+|++. +++.+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~k-ig~~LPsL~sL~i~~-~~~~~-~dF~----~lc~sFpNL~sLDIS~T-nI~nl---- 188 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKK-IGTMLPSLRSLVISG-RQFDN-DDFS----QLCASFPNLRSLDISGT-NISNL---- 188 (699)
T ss_pred HHhhhhcCccccchhhccHHHH-HhhhCcccceEEecC-ceecc-hhHH----HHhhccCccceeecCCC-CccCc----
Confidence 357888888731 22222333 345788888888876 22210 0000 01236888888888875 34443
Q ss_pred CccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCcee--cc--hhhHhcCCCCcEEeeec
Q 044237 90 SKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHL--VT--SSTAKTLVQLVTVRMRE 157 (212)
Q Consensus 90 ~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l--~~--~~~~~~l~~L~~L~i~~ 157 (212)
.+...+++|+.|.+++..--...--..+..+.+|+.|+|+.=.....- .. ......+|+|+.|+.++
T Consensus 189 -~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 189 -SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred -HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 223567778777777654322100001456788888888864433221 00 01123467777776663
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.97 E-value=5.7e-05 Score=68.98 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=24.4
Q ss_pred HhcCCCCcEEeeeccccccccccccccccccccccCCccceeecCCCCC
Q 044237 144 AKTLVQLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLDS 192 (212)
Q Consensus 144 ~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~ 192 (212)
...+++|+.+++ +|.++.++...+. ..-|+|++|++.+-+.
T Consensus 448 ~~~l~qL~~lDl-S~N~L~~~~l~~~-------~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 448 LAQLPQLKVLDL-SCNNLSEVTLPEA-------LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhcCcceEEec-ccchhhhhhhhhh-------CCCcccceeeccCCcc
Confidence 345677777777 4556655543221 1126888888877665
No 30
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.95 E-value=0.00025 Score=64.54 Aligned_cols=119 Identities=18% Similarity=0.138 Sum_probs=68.0
Q ss_pred HHhhcCCCcEEEEeecCCcceecccc-cccc-------ccccccccccEEecCcccccccccccCCccCCCcCcccEEEE
Q 044237 33 VLERFHSLEILILCYFSFHEEVFSME-GCLE-------KHVGKLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKV 104 (212)
Q Consensus 33 ~~~~l~~L~~L~i~~C~~l~~i~~~~-~~~~-------~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i 104 (212)
+.... .|+++.+.++...+...... ..+. .....-.+|++|+|+|-..+..-|.. .....||+|+.|.|
T Consensus 79 ~l~~~-~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~--kig~~LPsL~sL~i 155 (699)
T KOG3665|consen 79 MLRKQ-DLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPK--KIGTMLPSLRSLVI 155 (699)
T ss_pred HHhhc-cccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHH--HHhhhCcccceEEe
Confidence 44333 38888887766554432211 1000 00112357888998885544333321 12246889999988
Q ss_pred ecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecc
Q 044237 105 YDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMREC 158 (212)
Q Consensus 105 ~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c 158 (212)
.+-.-..+-+.....+||||..|+|++++ ++.+ ++.+++.+|+.|.+.+.
T Consensus 156 ~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl---~GIS~LknLq~L~mrnL 205 (699)
T KOG3665|consen 156 SGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL---SGISRLKNLQVLSMRNL 205 (699)
T ss_pred cCceecchhHHHHhhccCccceeecCCCC-ccCc---HHHhccccHHHHhccCC
Confidence 87433222122225678999999999875 4443 34667777777766654
No 31
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.90 E-value=0.0034 Score=55.38 Aligned_cols=137 Identities=12% Similarity=0.115 Sum_probs=72.3
Q ss_pred cCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccc--------------c---ccccccccccEE
Q 044237 12 FGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCL--------------E---KHVGKLAMIKEL 74 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~--------------~---~~~~~l~~L~~L 74 (212)
++.-+.|+++.+.+..+.+. .+.+++||+++++.+ ..++.|+...+.. . .....+|.|+.|
T Consensus 77 p~~t~~LdlsnNkl~~id~~-~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFE-FFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred ccceeeeeccccccccCcHH-HHhcCCcceeeeecc-chhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 45667788887777766655 556999999999987 5777776532200 0 011235566666
Q ss_pred ecCcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEe
Q 044237 75 QLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVR 154 (212)
Q Consensus 75 ~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~ 154 (212)
+++.- .+..+.. ...+.-.++++|.+++- ..+.+-......|.+|..|.+++.. ++.+ +....+++++|+.|.
T Consensus 155 DLSrN-~is~i~~---~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNr-ittL-p~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 155 DLSRN-LISEIPK---PSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNR-ITTL-PQRSFKRLPKLESLD 227 (873)
T ss_pred hhhhc-hhhcccC---CCCCCCCCceEEeeccc-cccccccccccccchheeeecccCc-cccc-CHHHhhhcchhhhhh
Confidence 66531 1222211 01122245777777653 2222222223345566666665542 4333 233445566666665
Q ss_pred eec
Q 044237 155 MRE 157 (212)
Q Consensus 155 i~~ 157 (212)
+..
T Consensus 228 Lnr 230 (873)
T KOG4194|consen 228 LNR 230 (873)
T ss_pred ccc
Confidence 543
No 32
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.89 E-value=6.7e-05 Score=56.18 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=42.7
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCc
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQ 78 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~ 78 (212)
.+.+|+.|++..+.++.+|.. ++.++.|+.|++.- .++..++...| .||.|+.|++.+
T Consensus 54 ~l~nlevln~~nnqie~lp~~--issl~klr~lnvgm-nrl~~lprgfg-------s~p~levldlty 111 (264)
T KOG0617|consen 54 ELKNLEVLNLSNNQIEELPTS--ISSLPKLRILNVGM-NRLNILPRGFG-------SFPALEVLDLTY 111 (264)
T ss_pred HhhhhhhhhcccchhhhcChh--hhhchhhhheecch-hhhhcCccccC-------CCchhhhhhccc
Confidence 488899999888888888876 45899999998853 55554443333 688888888765
No 33
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.88 E-value=0.0003 Score=64.43 Aligned_cols=109 Identities=23% Similarity=0.260 Sum_probs=72.1
Q ss_pred cccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccC
Q 044237 10 HLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQD 89 (212)
Q Consensus 10 ~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~ 89 (212)
..|++||.|+++++.+..||.. ...++..||+|.+++ .+++.+++... .+++|+.|...+ ..+.+++
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas-~~~kle~LeeL~LSG-NkL~~Lp~tva-------~~~~L~tL~ahs-N~l~~fP--- 446 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPAS-KLRKLEELEELNLSG-NKLTTLPDTVA-------NLGRLHTLRAHS-NQLLSFP--- 446 (1081)
T ss_pred ccccceeeeeecccccccCCHH-HHhchHHhHHHhccc-chhhhhhHHHH-------hhhhhHHHhhcC-Cceeech---
Confidence 3588999999998889999988 677999999999999 68887765322 466676665543 1233332
Q ss_pred CccCCCcCcccEEEEecCcccccc-CCCCcccCCCCCeEEEcCCCCC
Q 044237 90 SKLGPIFQYLEILKVYDCQSLLIL-LPSSSVSFRNLTEIVAFGCKEL 135 (212)
Q Consensus 90 ~~~~~~l~~L~~L~i~~C~~L~~l-~~~~~~~l~~L~~L~i~~C~~L 135 (212)
....++.|+.++++ |++|... .+. ...-++|++|+++|...+
T Consensus 447 --e~~~l~qL~~lDlS-~N~L~~~~l~~-~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 447 --ELAQLPQLKVLDLS-CNNLSEVTLPE-ALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred --hhhhcCcceEEecc-cchhhhhhhhh-hCCCcccceeeccCCccc
Confidence 11356667777776 4455432 222 222278888888887654
No 34
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.52 E-value=0.0011 Score=55.80 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=94.8
Q ss_pred cCCccEEEEc-CCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 12 FGSLKQLNIG-GDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 12 l~~Lk~L~l~-~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
...|+.|... +..+...+.+...++.++|+.+.+.+|..+... |+. .-....+.|+.+.+.+|.....--. .
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~----~ft-~l~rn~~~Le~l~~e~~~~~~d~tL--~ 365 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR----GFT-MLGRNCPHLERLDLEECGLITDGTL--A 365 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh----hhh-hhhcCChhhhhhcccccceehhhhH--h
Confidence 6778999888 666777777745568899999999999875432 210 0012567888888887754332100 0
Q ss_pred ccCCCcCcccEEEEecCcccccc----CCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecccccc
Q 044237 91 KLGPIFQYLEILKVYDCQSLLIL----LPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMT 162 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l----~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~ 162 (212)
......+.|+.|.+++|...++. +.........|..+++++|+.++.... .....+++||.+.+.+|..+.
T Consensus 366 sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-e~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 366 SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL-EHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH-HHHhhCcccceeeeechhhhh
Confidence 11246788899999988877763 111134567788899999987765422 234567788888888887764
No 35
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.33 E-value=0.0052 Score=35.28 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=27.9
Q ss_pred CCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCccee
Q 044237 13 GSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEV 54 (212)
Q Consensus 13 ~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i 54 (212)
++|++|+++.+.++.+|.. +++|++|+.|+++++ .++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~--l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPE--LSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGH--GTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCCCCcccCch--HhCCCCCCEEEecCC-CCCCC
Confidence 4788898887777777763 468899999998886 55543
No 36
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.20 E-value=0.00065 Score=58.69 Aligned_cols=120 Identities=19% Similarity=0.203 Sum_probs=78.9
Q ss_pred ccccccEEecCcccccccccccCCccCCCcCcccEEEEecC-ccccccC---CCCcccCCCCCeEEEcCCCCCceecchh
Q 044237 67 KLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDC-QSLLILL---PSSSVSFRNLTEIVAFGCKELIHLVTSS 142 (212)
Q Consensus 67 ~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C-~~L~~l~---~~~~~~l~~L~~L~i~~C~~L~~l~~~~ 142 (212)
..+.|+.|.+.+|..+...... ......++|+.|++.+| ....... .......++|+.+.++.|..+.+..-..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLD--ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred hCchhhHhhhcccccCChhhHH--HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 3678888888888877752211 12245788999999884 2222110 0112345889999999998776654444
Q ss_pred hHhcCCCCcEEeeeccccccccccccccccccccccCCccceeecCCCCCCc
Q 044237 143 TAKTLVQLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLDSLT 194 (212)
Q Consensus 143 ~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~L~ 194 (212)
.+..+++|++|.+.+|..+..- + .......+|+|++|++.+|..++
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~----g--l~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDE----G--LVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred HHhhCCCcceEccCCCCccchh----H--HHHHHHhcCcccEEeeecCccch
Confidence 5666899999999999874221 1 11112357889999999988873
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=95.65 E-value=0.016 Score=43.85 Aligned_cols=109 Identities=13% Similarity=0.051 Sum_probs=43.1
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
.+.+|+.|+++.+.++.++. +..+++|+.|.+++ ..++.+.+. -...+|+|++|.+++- ++..+.. .
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~~---l~~L~~L~~L~L~~-N~I~~i~~~------l~~~lp~L~~L~L~~N-~I~~l~~--l 106 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLEG---LPGLPRLKTLDLSN-NRISSISEG------LDKNLPNLQELYLSNN-KISDLNE--L 106 (175)
T ss_dssp T-TT--EEE-TTS--S--TT-------TT--EEE--S-S---S-CHH------HHHH-TT--EEE-TTS----SCCC--C
T ss_pred hhcCCCEEECCCCCCccccC---ccChhhhhhcccCC-CCCCccccc------hHHhCCcCCEEECcCC-cCCChHH--h
Confidence 47899999999777777753 34889999999987 577655321 0125899999999762 3333211 1
Q ss_pred ccCCCcCcccEEEEecCcccccc--CCCCcccCCCCCeEEEcCC
Q 044237 91 KLGPIFQYLEILKVYDCQSLLIL--LPSSSVSFRNLTEIVAFGC 132 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l--~~~~~~~l~~L~~L~i~~C 132 (212)
.....+++|+.|++.+.+--..- ....+..+|+|+.|+-...
T Consensus 107 ~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 107 EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 12246889999999986532210 0001345788887755443
No 38
>PLN03150 hypothetical protein; Provisional
Probab=95.24 E-value=0.044 Score=49.67 Aligned_cols=80 Identities=13% Similarity=0.142 Sum_probs=41.3
Q ss_pred ccEEEEc-CCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccc-cccccCCcc
Q 044237 15 LKQLNIG-GDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLE-QLCKQDSKL 92 (212)
Q Consensus 15 Lk~L~l~-~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~-~l~~~~~~~ 92 (212)
+..|++. +.....+|.. ++.+++|+.|+++++ .+...++. ....+++|+.|++++.. +. .+ +..
T Consensus 420 v~~L~L~~n~L~g~ip~~--i~~L~~L~~L~Ls~N-~l~g~iP~------~~~~l~~L~~LdLs~N~-lsg~i----P~~ 485 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPND--ISKLRHLQSINLSGN-SIRGNIPP------SLGSITSLEVLDLSYNS-FNGSI----PES 485 (623)
T ss_pred EEEEECCCCCccccCCHH--HhCCCCCCEEECCCC-cccCcCCh------HHhCCCCCCEEECCCCC-CCCCC----chH
Confidence 5556666 3333345543 347777777777764 44322221 11246677777776642 22 12 112
Q ss_pred CCCcCcccEEEEecCc
Q 044237 93 GPIFQYLEILKVYDCQ 108 (212)
Q Consensus 93 ~~~l~~L~~L~i~~C~ 108 (212)
...+++|+.|+++++.
T Consensus 486 l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 486 LGQLTSLRILNLNGNS 501 (623)
T ss_pred HhcCCCCCEEECcCCc
Confidence 2456666777666654
No 39
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.19 E-value=0.0031 Score=48.31 Aligned_cols=66 Identities=11% Similarity=0.084 Sum_probs=33.1
Q ss_pred CcCcccEEEEecCccccccCCC-CcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccc
Q 044237 95 IFQYLEILKVYDCQSLLILLPS-SSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAM 161 (212)
Q Consensus 95 ~l~~L~~L~i~~C~~L~~l~~~-~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l 161 (212)
.++.++.|.+.+|..+.++--. ....+++|+.|+|++|+++++-. ......+++|+.|.+.+.+.+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCchhh
Confidence 3455566666666665543100 01134566666666666655431 123344556666666554443
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.14 E-value=0.024 Score=32.48 Aligned_cols=14 Identities=14% Similarity=0.093 Sum_probs=6.4
Q ss_pred ccCCCCCeEEEcCC
Q 044237 119 VSFRNLTEIVAFGC 132 (212)
Q Consensus 119 ~~l~~L~~L~i~~C 132 (212)
..+++|+.|+++++
T Consensus 21 ~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 21 SNLPNLETLNLSNN 34 (44)
T ss_dssp TTCTTSSEEEETSS
T ss_pred hCCCCCCEEEecCC
Confidence 34444444444444
No 41
>PLN03150 hypothetical protein; Provisional
Probab=95.01 E-value=0.051 Score=49.29 Aligned_cols=63 Identities=11% Similarity=0.048 Sum_probs=36.6
Q ss_pred CCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccc
Q 044237 94 PIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECR 159 (212)
Q Consensus 94 ~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 159 (212)
..+++|+.|+++++. +....|.....+++|+.|+++++. +....+ .....+++|+.|+++++.
T Consensus 439 ~~L~~L~~L~Ls~N~-l~g~iP~~~~~l~~L~~LdLs~N~-lsg~iP-~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 439 SKLRHLQSINLSGNS-IRGNIPPSLGSITSLEVLDLSYNS-FNGSIP-ESLGQLTSLRILNLNGNS 501 (623)
T ss_pred hCCCCCCEEECCCCc-ccCcCChHHhCCCCCCEEECCCCC-CCCCCc-hHHhcCCCCCEEECcCCc
Confidence 456677777777653 332234335667777777777664 322222 245567777777777664
No 42
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.69 E-value=0.011 Score=50.09 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=64.3
Q ss_pred CCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCccCCCcCcccEE
Q 044237 23 DDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEIL 102 (212)
Q Consensus 23 ~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L 102 (212)
+....|++. .+..+++|..|++++ .-+..++.+.+ .+..|+.|+++.- .++.++... ..++.++.+
T Consensus 421 nn~isfv~~-~l~~l~kLt~L~L~N-N~Ln~LP~e~~-------~lv~Lq~LnlS~N-rFr~lP~~~----y~lq~lEtl 486 (565)
T KOG0472|consen 421 NNKISFVPL-ELSQLQKLTFLDLSN-NLLNDLPEEMG-------SLVRLQTLNLSFN-RFRMLPECL----YELQTLETL 486 (565)
T ss_pred cCccccchH-HHHhhhcceeeeccc-chhhhcchhhh-------hhhhhheeccccc-ccccchHHH----hhHHHHHHH
Confidence 344445555 556778888888776 34444444333 4556777777642 233322110 112233333
Q ss_pred EEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccc
Q 044237 103 KVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECR 159 (212)
Q Consensus 103 ~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 159 (212)
-+++ ..+..+.+.++..+.+|+.|++.+.+ ++.+++ ..+++.+|++|.+.+-+
T Consensus 487 las~-nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp--~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 487 LASN-NQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPP--ILGNMTNLRHLELDGNP 539 (565)
T ss_pred Hhcc-ccccccChHHhhhhhhcceeccCCCc-hhhCCh--hhccccceeEEEecCCc
Confidence 2222 23444444446667777777776654 445533 56777788888777755
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.61 E-value=0.029 Score=47.63 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=20.8
Q ss_pred CccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceec
Q 044237 14 SLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVF 55 (212)
Q Consensus 14 ~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~ 55 (212)
+|+.|++..+.+..+|.. .+.+++|+.|+++++ .+..++
T Consensus 141 nL~~L~l~~N~i~~l~~~--~~~l~~L~~L~l~~N-~l~~l~ 179 (394)
T COG4886 141 NLKELDLSDNKIESLPSP--LRNLPNLKNLDLSFN-DLSDLP 179 (394)
T ss_pred hcccccccccchhhhhhh--hhccccccccccCCc-hhhhhh
Confidence 566666665555555322 236666666666663 444433
No 44
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.51 E-value=0.011 Score=49.96 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=16.7
Q ss_pred cCCccEEEEcCCCCceechHHHHhhcCCCcEEEEee
Q 044237 12 FGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCY 47 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~ 47 (212)
+++|..|+++.+.+..+|.. + +.+..|+.|+|+.
T Consensus 434 l~kLt~L~L~NN~Ln~LP~e-~-~~lv~Lq~LnlS~ 467 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLLNDLPEE-M-GSLVRLQTLNLSF 467 (565)
T ss_pred hhcceeeecccchhhhcchh-h-hhhhhhheecccc
Confidence 44555555554455555544 2 2444455555544
No 45
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.38 E-value=0.0041 Score=47.67 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=46.4
Q ss_pred ccccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCc
Q 044237 67 KLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELI 136 (212)
Q Consensus 67 ~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~ 136 (212)
.++.++.|.+.+|..+...+.+.- .+..++|+.|+|++|+..++-.-..+..|++|+.|.+++-+...
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l--~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERL--GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred ccchhhhheeccccchhhHHHHHh--cccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 567777788888877766544321 23578888888888888876322225568888888888765443
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=94.29 E-value=0.008 Score=52.84 Aligned_cols=126 Identities=16% Similarity=0.184 Sum_probs=56.4
Q ss_pred cCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCc
Q 044237 12 FGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSK 91 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~ 91 (212)
+..|..|+++.+.+..+|.. . ..+ -|+.|.+++ ++++.+++..| ..+.|..|+.+.+ ++.++..
T Consensus 120 L~~lt~l~ls~NqlS~lp~~-l-C~l-pLkvli~sN-Nkl~~lp~~ig-------~~~tl~~ld~s~n-ei~slps---- 183 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLSHLPDG-L-CDL-PLKVLIVSN-NKLTSLPEEIG-------LLPTLAHLDVSKN-EIQSLPS---- 183 (722)
T ss_pred hhHHHHhhhccchhhcCChh-h-hcC-cceeEEEec-CccccCCcccc-------cchhHHHhhhhhh-hhhhchH----
Confidence 34444444443344444443 2 122 355555555 45555444333 3455555555543 2333311
Q ss_pred cCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccc
Q 044237 92 LGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECR 159 (212)
Q Consensus 92 ~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 159 (212)
..+.+.+|+.|.++.- .+.++++. +..+ .|..|+++ |+++.+++. .+..+.+|++|.+.+-+
T Consensus 184 ql~~l~slr~l~vrRn-~l~~lp~E-l~~L-pLi~lDfS-cNkis~iPv--~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 184 QLGYLTSLRDLNVRRN-HLEDLPEE-LCSL-PLIRLDFS-CNKISYLPV--DFRKMRHLQVLQLENNP 245 (722)
T ss_pred HhhhHHHHHHHHHhhh-hhhhCCHH-HhCC-ceeeeecc-cCceeecch--hhhhhhhheeeeeccCC
Confidence 1133444444444432 22222222 2222 34445543 566666532 45566677777766544
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.59 E-value=0.21 Score=38.63 Aligned_cols=87 Identities=15% Similarity=0.012 Sum_probs=42.0
Q ss_pred hcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccc--c
Q 044237 36 RFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLI--L 113 (212)
Q Consensus 36 ~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~--l 113 (212)
.++.|.+|.+.+ .+++.|-+.- ...+|+|+.|.+.+- +++.+.+-. ....+|.|++|.+-+-+--.. .
T Consensus 62 ~l~rL~tLll~n-NrIt~I~p~L------~~~~p~l~~L~LtnN-si~~l~dl~--pLa~~p~L~~Ltll~Npv~~k~~Y 131 (233)
T KOG1644|consen 62 HLPRLHTLLLNN-NRITRIDPDL------DTFLPNLKTLILTNN-SIQELGDLD--PLASCPKLEYLTLLGNPVEHKKNY 131 (233)
T ss_pred CccccceEEecC-Ccceeeccch------hhhccccceEEecCc-chhhhhhcc--hhccCCccceeeecCCchhcccCc
Confidence 566777777766 5666553321 124677777777651 222221110 112455666666554321110 0
Q ss_pred CCCCcccCCCCCeEEEcCC
Q 044237 114 LPSSSVSFRNLTEIVAFGC 132 (212)
Q Consensus 114 ~~~~~~~l~~L~~L~i~~C 132 (212)
.-..+..+|+|+.|+..+-
T Consensus 132 R~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 132 RLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeEEEEecCcceEeehhhh
Confidence 0001334677777776643
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=92.43 E-value=0.022 Score=46.63 Aligned_cols=14 Identities=21% Similarity=0.128 Sum_probs=6.9
Q ss_pred cCCccceeecCCCC
Q 044237 178 VFRKLKMLELRDLD 191 (212)
Q Consensus 178 ~~p~L~~L~l~~cp 191 (212)
.+|.|+.+.+.+-|
T Consensus 397 ~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 397 NLPCLETLRLTGNP 410 (490)
T ss_pred cccHHHHHhhcCCC
Confidence 35555555554444
No 49
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.03 E-value=0.11 Score=23.18 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=4.3
Q ss_pred CCcEEeeeccc
Q 044237 149 QLVTVRMRECR 159 (212)
Q Consensus 149 ~L~~L~i~~c~ 159 (212)
+|+.|++++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 34444444444
No 50
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.74 E-value=1.5 Score=30.52 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=29.4
Q ss_pred hhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccccC
Q 044237 35 ERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILL 114 (212)
Q Consensus 35 ~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~ 114 (212)
....+|+.+.+.+ .++.+.+. .-...++|+.+.+.+ +++.+.... ....++++.+.+.+ .+..+.
T Consensus 9 ~~~~~l~~i~~~~--~~~~I~~~------~F~~~~~l~~i~~~~--~~~~i~~~~---F~~~~~l~~i~~~~--~~~~i~ 73 (129)
T PF13306_consen 9 YNCSNLESITFPN--TIKKIGEN------AFSNCTSLKSINFPN--NLTSIGDNA---FSNCKSLESITFPN--NLKSIG 73 (129)
T ss_dssp TT-TT--EEEETS--T--EE-TT------TTTT-TT-SEEEESS--TTSCE-TTT---TTT-TT-EEEEETS--TT-EE-
T ss_pred hCCCCCCEEEECC--CeeEeChh------hcccccccccccccc--cccccceee---eecccccccccccc--cccccc
Confidence 3555666666542 34433221 011344566666654 345443221 12344566666643 222222
Q ss_pred CCCcccCCCCCeEEEc
Q 044237 115 PSSSVSFRNLTEIVAF 130 (212)
Q Consensus 115 ~~~~~~l~~L~~L~i~ 130 (212)
.......++|+.+.+.
T Consensus 74 ~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 74 DNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TTTTTT-TTECEEEET
T ss_pred cccccccccccccccC
Confidence 2212234566666654
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.70 E-value=0.08 Score=42.14 Aligned_cols=113 Identities=14% Similarity=0.134 Sum_probs=54.5
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
.|.+|+.|.+.+-.++.+-. ...|++|++|.+++ ......+.. +......|+|++|.+++= +++.+ ...
T Consensus 41 ~~~~le~ls~~n~gltt~~~---~P~Lp~LkkL~lsd-n~~~~~~~l----~vl~e~~P~l~~l~ls~N-ki~~l--stl 109 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN---FPKLPKLKKLELSD-NYRRVSGGL----EVLAEKAPNLKVLNLSGN-KIKDL--STL 109 (260)
T ss_pred cccchhhhhhhccceeeccc---CCCcchhhhhcccC-Ccccccccc----eehhhhCCceeEEeecCC-ccccc--ccc
Confidence 36677777666333332211 12667888888765 322211111 111224588888887752 12211 000
Q ss_pred ccCCCcCcccEEEEecCccccccCC--CCcccCCCCCeEEEcCCCC
Q 044237 91 KLGPIFQYLEILKVYDCQSLLILLP--SSSVSFRNLTEIVAFGCKE 134 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l~~--~~~~~l~~L~~L~i~~C~~ 134 (212)
.....+++|..|.+.+|+...---+ .-...+++|++|+-..+..
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 1123567777777777764431000 0012356777776665544
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.53 E-value=0.21 Score=42.38 Aligned_cols=129 Identities=20% Similarity=0.207 Sum_probs=69.0
Q ss_pred CccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccc
Q 044237 8 PQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCK 87 (212)
Q Consensus 8 p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~ 87 (212)
+.+.+++|+.|+++.+.+..+|.. .+..++|+.|.+++ ..+..++...+ ....|+++.+.+=+.++.+
T Consensus 158 ~~~~l~~L~~L~l~~N~l~~l~~~--~~~~~~L~~L~ls~-N~i~~l~~~~~-------~~~~L~~l~~~~N~~~~~~-- 225 (394)
T COG4886 158 PLRNLPNLKNLDLSFNDLSDLPKL--LSNLSNLNNLDLSG-NKISDLPPEIE-------LLSALEELDLSNNSIIELL-- 225 (394)
T ss_pred hhhccccccccccCCchhhhhhhh--hhhhhhhhheeccC-CccccCchhhh-------hhhhhhhhhhcCCcceecc--
Confidence 456799999999997778888764 23889999999998 57776655321 2333666666553211111
Q ss_pred cCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeec
Q 044237 88 QDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRE 157 (212)
Q Consensus 88 ~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~ 157 (212)
.....+.++..+.+.+ ..+..+ +.....+++++.|+++++. +.++.. ...+.+++.|++.+
T Consensus 226 ---~~~~~~~~l~~l~l~~-n~~~~~-~~~~~~l~~l~~L~~s~n~-i~~i~~---~~~~~~l~~L~~s~ 286 (394)
T COG4886 226 ---SSLSNLKNLSGLELSN-NKLEDL-PESIGNLSNLETLDLSNNQ-ISSISS---LGSLTNLRELDLSG 286 (394)
T ss_pred ---hhhhhcccccccccCC-ceeeec-cchhccccccceecccccc-cccccc---ccccCccCEEeccC
Confidence 0112233333333211 122211 2224445556666666543 333211 34455566666654
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.52 E-value=0.16 Score=41.69 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=22.6
Q ss_pred cCCccEEEEcCCCCceechH-HHHhhcCCCcEEEEeecCCcce
Q 044237 12 FGSLKQLNIGGDDSACFPIW-NVLERFHSLEILILCYFSFHEE 53 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~~p~~-~~~~~l~~L~~L~i~~C~~l~~ 53 (212)
...++.+++..+.+.....- .+..++|.|+.|+|+ |..+..
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls-~N~L~s 111 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLS-CNSLSS 111 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeecc-CCcCCC
Confidence 44566666665444433211 134677777887774 455543
No 54
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=90.38 E-value=0.064 Score=43.97 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=5.8
Q ss_pred ccccccEEecCc
Q 044237 67 KLAMIKELQLHQ 78 (212)
Q Consensus 67 ~l~~L~~L~l~~ 78 (212)
..|.++.|.++.
T Consensus 305 L~Pkir~L~lS~ 316 (490)
T KOG1259|consen 305 LAPKLRRLILSQ 316 (490)
T ss_pred hccceeEEeccc
Confidence 345555555543
No 55
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.66 E-value=0.052 Score=44.00 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=22.9
Q ss_pred cCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcce
Q 044237 12 FGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEE 53 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~ 53 (212)
+.+.|.|+..+..++.+. +..+++.||.|.++- .+++.
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSv-NkIss 55 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSV-NKISS 55 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHhcccceeEEeec-ccccc
Confidence 556667776654555443 345788888887764 34443
No 56
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.96 E-value=0.56 Score=23.26 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=12.0
Q ss_pred CccceeecCCCCCCce
Q 044237 180 RKLKMLELRDLDSLTS 195 (212)
Q Consensus 180 p~L~~L~l~~cp~L~~ 195 (212)
|+|++|.+.+|++++.
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 6778888888887763
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=83.08 E-value=0.85 Score=36.44 Aligned_cols=115 Identities=19% Similarity=0.184 Sum_probs=67.6
Q ss_pred hcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCccCCCcCcccEEEEecCc--ccccc
Q 044237 36 RFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQ--SLLIL 113 (212)
Q Consensus 36 ~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~--~L~~l 113 (212)
.+.+|+.|++.+| .++.+-. ...+|+||+|.++.=. + .+..+-.......++|++|.+++-. -+.++
T Consensus 41 ~~~~le~ls~~n~-gltt~~~--------~P~Lp~LkkL~lsdn~-~-~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl 109 (260)
T KOG2739|consen 41 EFVELELLSVINV-GLTTLTN--------FPKLPKLKKLELSDNY-R-RVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL 109 (260)
T ss_pred cccchhhhhhhcc-ceeeccc--------CCCcchhhhhcccCCc-c-cccccceehhhhCCceeEEeecCCcccccccc
Confidence 6677778777775 3332211 1247788888887521 1 1111101111345888988887632 13343
Q ss_pred CCCCcccCCCCCeEEEcCCCCCcee-cchhhHhcCCCCcEEeeeccccccc
Q 044237 114 LPSSSVSFRNLTEIVAFGCKELIHL-VTSSTAKTLVQLVTVRMRECRAMTE 163 (212)
Q Consensus 114 ~~~~~~~l~~L~~L~i~~C~~L~~l-~~~~~~~~l~~L~~L~i~~c~~l~~ 163 (212)
.| +..+.+|..|...+|.-..-- .....+..+++|+.|+-.++..-+.
T Consensus 110 ~p--l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea 158 (260)
T KOG2739|consen 110 RP--LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEA 158 (260)
T ss_pred ch--hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCccc
Confidence 33 567888999999999754311 1122456678999999888877543
No 58
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=82.34 E-value=1 Score=21.34 Aligned_cols=17 Identities=41% Similarity=0.454 Sum_probs=11.0
Q ss_pred ccceeecCCCCCCceecC
Q 044237 181 KLKMLELRDLDSLTSFCS 198 (212)
Q Consensus 181 ~L~~L~l~~cp~L~~~~~ 198 (212)
+|++|++++| +++.++.
T Consensus 1 ~L~~Ldls~n-~l~~ip~ 17 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPS 17 (22)
T ss_dssp TESEEEETSS-EESEEGT
T ss_pred CccEEECCCC-cCEeCCh
Confidence 4667777777 6666555
No 59
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=82.09 E-value=1 Score=38.39 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=58.1
Q ss_pred CCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCccCCCcCcccE
Q 044237 22 GDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEI 101 (212)
Q Consensus 22 ~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~ 101 (212)
|......|.. .++.+++|++|++++ ..++.|-+. .-..+..+++|.+.+- +++.+-.+ +...+..|+.
T Consensus 259 d~~d~~cP~~-cf~~L~~L~~lnlsn-N~i~~i~~~------aFe~~a~l~eL~L~~N-~l~~v~~~---~f~~ls~L~t 326 (498)
T KOG4237|consen 259 DFPDSICPAK-CFKKLPNLRKLNLSN-NKITRIEDG------AFEGAAELQELYLTRN-KLEFVSSG---MFQGLSGLKT 326 (498)
T ss_pred cCcCCcChHH-HHhhcccceEeccCC-Cccchhhhh------hhcchhhhhhhhcCcc-hHHHHHHH---hhhcccccee
Confidence 4445555666 567899999999988 567654321 1113567777777652 34444221 2245677888
Q ss_pred EEEecCccccccCCCCcccCCCCCeEEEc
Q 044237 102 LKVYDCQSLLILLPSSSVSFRNLTEIVAF 130 (212)
Q Consensus 102 L~i~~C~~L~~l~~~~~~~l~~L~~L~i~ 130 (212)
|++++- .++.+.|.....+.+|.+|.+-
T Consensus 327 L~L~~N-~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 327 LSLYDN-QITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred eeecCC-eeEEEecccccccceeeeeehc
Confidence 888874 4555555545556677777664
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=79.80 E-value=13 Score=25.58 Aligned_cols=101 Identities=11% Similarity=0.037 Sum_probs=47.1
Q ss_pred cCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCc
Q 044237 12 FGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSK 91 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~ 91 (212)
..+|+.+.+.. ....++.. ....+++|+.+.+.+ +++.+... .-...++++.+.+.+ ++..+...
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~-~F~~~~~l~~i~~~~--~~~~i~~~------~F~~~~~l~~i~~~~--~~~~i~~~--- 75 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGEN-AFSNCTSLKSINFPN--NLTSIGDN------AFSNCKSLESITFPN--NLKSIGDN--- 75 (129)
T ss_dssp -TT--EEEETS-T--EE-TT-TTTT-TT-SEEEESS--TTSCE-TT------TTTT-TT-EEEEETS--TT-EE-TT---
T ss_pred CCCCCEEEECC-CeeEeChh-hcccccccccccccc--ccccccee------eeecccccccccccc--cccccccc---
Confidence 45788888863 45566665 556788899998865 45554321 112355788888865 45555322
Q ss_pred cCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEc
Q 044237 92 LGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAF 130 (212)
Q Consensus 92 ~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~ 130 (212)
.....++|+.+.+.. ++..+........ +|+.+.+.
T Consensus 76 ~F~~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTTT-TTECEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccccccCc--cccEEchhhhcCC-CceEEEEC
Confidence 223467888888753 3444333322233 66666554
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=78.40 E-value=3.7 Score=31.90 Aligned_cols=88 Identities=19% Similarity=0.196 Sum_probs=48.7
Q ss_pred ccccccEEecCcccccccccccCCccCCCcCcccEEEEecC--ccccccCCCCcccCCCCCeEEEcCCCCCcee-cchhh
Q 044237 67 KLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDC--QSLLILLPSSSVSFRNLTEIVAFGCKELIHL-VTSST 143 (212)
Q Consensus 67 ~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C--~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l-~~~~~ 143 (212)
.+++|..|.+.+= .++.| ++.....+++|+.|.+.+- ..+.++-| +..+|.|++|.+-+.+--..- ....+
T Consensus 62 ~l~rL~tLll~nN-rIt~I---~p~L~~~~p~l~~L~LtnNsi~~l~dl~p--La~~p~L~~Ltll~Npv~~k~~YR~yv 135 (233)
T KOG1644|consen 62 HLPRLHTLLLNNN-RITRI---DPDLDTFLPNLKTLILTNNSIQELGDLDP--LASCPKLEYLTLLGNPVEHKKNYRLYV 135 (233)
T ss_pred CccccceEEecCC-cceee---ccchhhhccccceEEecCcchhhhhhcch--hccCCccceeeecCCchhcccCceeEE
Confidence 4667777777652 34443 2233345777888887762 23444433 566778888877664311000 00112
Q ss_pred HhcCCCCcEEeeecccc
Q 044237 144 AKTLVQLVTVRMRECRA 160 (212)
Q Consensus 144 ~~~l~~L~~L~i~~c~~ 160 (212)
+-.+|+|+.|++.....
T Consensus 136 l~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQKVTR 152 (233)
T ss_pred EEecCcceEeehhhhhH
Confidence 34567888887766543
No 62
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=74.60 E-value=0.74 Score=39.25 Aligned_cols=71 Identities=17% Similarity=0.167 Sum_probs=45.6
Q ss_pred CCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 7 FPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 7 ~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.|.+.-+.-..+++..+.++.+|.. .++.+++|+.|++++ .+++.|-+. ....+++|-+|.+.+=.+++.+
T Consensus 61 VP~~LP~~tveirLdqN~I~~iP~~-aF~~l~~LRrLdLS~-N~Is~I~p~------AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQISSIPPG-AFKTLHRLRRLDLSK-NNISFIAPD------AFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred CcccCCCcceEEEeccCCcccCChh-hccchhhhceecccc-cchhhcChH------hhhhhHhhhHHHhhcCCchhhh
Confidence 3444445666777777888999988 888999999999998 677765432 1112444444444443444444
No 63
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=74.25 E-value=2.9 Score=20.44 Aligned_cols=19 Identities=16% Similarity=0.399 Sum_probs=11.4
Q ss_pred CCccEEEEcCCCCceechH
Q 044237 13 GSLKQLNIGGDDSACFPIW 31 (212)
Q Consensus 13 ~~Lk~L~l~~~~~~~~p~~ 31 (212)
++|++|++..+.+..+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666665556656554
No 64
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=74.25 E-value=2.9 Score=20.44 Aligned_cols=19 Identities=16% Similarity=0.399 Sum_probs=11.4
Q ss_pred CCccEEEEcCCCCceechH
Q 044237 13 GSLKQLNIGGDDSACFPIW 31 (212)
Q Consensus 13 ~~Lk~L~l~~~~~~~~p~~ 31 (212)
++|++|++..+.+..+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666665556656554
No 65
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.14 E-value=2.3 Score=35.10 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=21.2
Q ss_pred ccCCccEEEEcCCCC----ceechHHHHhhcCCCcEEEEee
Q 044237 11 LFGSLKQLNIGGDDS----ACFPIWNVLERFHSLEILILCY 47 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~----~~~p~~~~~~~l~~L~~L~i~~ 47 (212)
.+|.|++|+++++.+ ..+|. .+.+|+.|.+.+
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp~-----p~~nl~~lVLNg 130 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLPL-----PLKNLRVLVLNG 130 (418)
T ss_pred cCccceEeeccCCcCCCccccCcc-----cccceEEEEEcC
Confidence 478899999985433 33331 446888888866
No 66
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=71.78 E-value=0.2 Score=45.83 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=7.4
Q ss_pred HhhcCCCcEEEEee
Q 044237 34 LERFHSLEILILCY 47 (212)
Q Consensus 34 ~~~l~~L~~L~i~~ 47 (212)
++-++.|+.|+++.
T Consensus 183 Lqll~ale~LnLsh 196 (1096)
T KOG1859|consen 183 LQLLPALESLNLSH 196 (1096)
T ss_pred HHHHHHhhhhccch
Confidence 34555555555554
No 67
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=68.69 E-value=0.88 Score=40.57 Aligned_cols=42 Identities=17% Similarity=0.029 Sum_probs=29.1
Q ss_pred cCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceecc
Q 044237 12 FGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFS 56 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~ 56 (212)
+--|+.|.++.+.++.+|.. + +.++.|..|+.+.| .+..++.
T Consensus 142 ~lpLkvli~sNNkl~~lp~~-i-g~~~tl~~ld~s~n-ei~slps 183 (722)
T KOG0532|consen 142 DLPLKVLIVSNNKLTSLPEE-I-GLLPTLAHLDVSKN-EIQSLPS 183 (722)
T ss_pred cCcceeEEEecCccccCCcc-c-ccchhHHHhhhhhh-hhhhchH
Confidence 44588888887788888876 3 47778888887765 4444443
No 68
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=67.90 E-value=3.2 Score=35.62 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=21.6
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcce
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEE 53 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~ 53 (212)
.|.+|..|++.++.+..+.. ....+++|++|++++ ..++.
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~--~l~~~~~L~~L~ls~-N~I~~ 132 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIEN--LLSSLVNLQVLDLSF-NKITK 132 (414)
T ss_pred cccceeeeeccccchhhccc--chhhhhcchheeccc-ccccc
Confidence 35566666666444444432 123566777777766 44443
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=67.47 E-value=1.3 Score=32.43 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=33.8
Q ss_pred ccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCc
Q 044237 15 LKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQ 78 (212)
Q Consensus 15 Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~ 78 (212)
|+..+++++....||.. +...++.++.+++.+ +.+..++++. ..+|.|+.|.++.
T Consensus 55 l~~i~ls~N~fk~fp~k-ft~kf~t~t~lNl~~-neisdvPeE~-------Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKK-FTIKFPTATTLNLAN-NEISDVPEEL-------AAMPALRSLNLRF 109 (177)
T ss_pred EEEEecccchhhhCCHH-Hhhccchhhhhhcch-hhhhhchHHH-------hhhHHhhhccccc
Confidence 44455666677777766 555677777777766 4555555431 2466677666654
No 70
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=55.65 E-value=5.9 Score=18.86 Aligned_cols=11 Identities=36% Similarity=0.202 Sum_probs=5.2
Q ss_pred CCCcEEEEeec
Q 044237 38 HSLEILILCYF 48 (212)
Q Consensus 38 ~~L~~L~i~~C 48 (212)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~n 12 (24)
T PF13516_consen 2 PNLETLDLSNN 12 (24)
T ss_dssp TT-SEEE-TSS
T ss_pred CCCCEEEccCC
Confidence 45666666554
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.62 E-value=1.5 Score=35.83 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=38.6
Q ss_pred CCCCCCc----cccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCc
Q 044237 3 LQADFPQ----HLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQ 78 (212)
Q Consensus 3 ~~~~~p~----~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~ 78 (212)
|...+.. ..++.|++|.++-+.++.+.. +..+++|++|.+.. ..+..+-+... ...+|+|+.|+|..
T Consensus 27 wg~~L~DIsic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRk-N~I~sldEL~Y-----LknlpsLr~LWL~E 97 (388)
T KOG2123|consen 27 WGCGLDDISICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRK-NCIESLDELEY-----LKNLPSLRTLWLDE 97 (388)
T ss_pred cCCCccHHHHHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHh-cccccHHHHHH-----HhcCchhhhHhhcc
Confidence 5555443 248899999999666665532 24788888888754 23332211111 12456666666654
No 72
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=46.92 E-value=10 Score=32.60 Aligned_cols=41 Identities=15% Similarity=0.094 Sum_probs=30.9
Q ss_pred cccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCccee
Q 044237 10 HLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEV 54 (212)
Q Consensus 10 ~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i 54 (212)
..+++|++|+++.+.++.+.. +..++.|+.|.+.+. .+..+
T Consensus 115 ~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L~l~~N-~i~~~ 155 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITKLEG---LSTLTLLKELNLSGN-LISDI 155 (414)
T ss_pred hhhhcchheeccccccccccc---hhhccchhhheeccC-cchhc
Confidence 468999999999777777653 248888999999884 55443
No 73
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=43.98 E-value=14 Score=18.49 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=10.9
Q ss_pred CCccEEEEcCCCCceech
Q 044237 13 GSLKQLNIGGDDSACFPI 30 (212)
Q Consensus 13 ~~Lk~L~l~~~~~~~~p~ 30 (212)
++|+.|+++++.++.+|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356666666555666654
No 74
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=41.99 E-value=6.2 Score=36.69 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=17.3
Q ss_pred cCCccEEEEcCCCCceechHHHHhhcCCCcEEEEee
Q 044237 12 FGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCY 47 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~ 47 (212)
++.|++|+++.++.... . .+..++.|++|+|++
T Consensus 186 l~ale~LnLshNk~~~v--~-~Lr~l~~LkhLDlsy 218 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKV--D-NLRRLPKLKHLDLSY 218 (1096)
T ss_pred HHHhhhhccchhhhhhh--H-HHHhccccccccccc
Confidence 45566666663333321 2 234666666666654
No 75
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=37.85 E-value=23 Score=29.87 Aligned_cols=115 Identities=19% Similarity=0.145 Sum_probs=67.0
Q ss_pred ccCCccEEEEcCCCCc----eechHHHHhhcCCCcEEEEeecCCcceecccccc--ccccccccccccEEecCccccccc
Q 044237 11 LFGSLKQLNIGGDDSA----CFPIWNVLERFHSLEILILCYFSFHEEVFSMEGC--LEKHVGKLAMIKELQLHQHYHLEQ 84 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~----~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~--~~~~~~~l~~L~~L~l~~~~~L~~ 84 (212)
+.+.|+.++++.+.+. ..-.. .+..+++|+.|++++- -++ ..|- .......+++|++|.+.+|- |+.
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~e-al~~~~~LevLdl~DN-tft----~egs~~LakaL~s~~~L~El~l~dcl-l~~ 255 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAE-ALEHCPHLEVLDLRDN-TFT----LEGSVALAKALSSWPHLRELNLGDCL-LEN 255 (382)
T ss_pred hccccceEEEecccccCchhHHHHH-HHHhCCcceeeecccc-hhh----hHHHHHHHHHhcccchheeecccccc-ccc
Confidence 3578899988833221 11122 2458899999999873 322 2220 01122357899999999983 443
Q ss_pred ccccCC--ccCCCcCcccEEEEecCcccccc----CCCCcccCCCCCeEEEcCCC
Q 044237 85 LCKQDS--KLGPIFQYLEILKVYDCQSLLIL----LPSSSVSFRNLTEIVAFGCK 133 (212)
Q Consensus 85 l~~~~~--~~~~~l~~L~~L~i~~C~~L~~l----~~~~~~~l~~L~~L~i~~C~ 133 (212)
=+.... ......++|+.|.+.++.-=... ... +...+.|+.|.+++|.
T Consensus 256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~-~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 256 EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC-MAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH-HhcchhhHHhcCCccc
Confidence 110000 01134789999999887543221 111 3447889999999886
No 76
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=28.37 E-value=53 Score=16.28 Aligned_cols=10 Identities=40% Similarity=0.271 Sum_probs=4.8
Q ss_pred CCCcEEEEee
Q 044237 38 HSLEILILCY 47 (212)
Q Consensus 38 ~~L~~L~i~~ 47 (212)
.+|+.|++++
T Consensus 2 ~~L~~L~L~~ 11 (26)
T smart00365 2 TNLEELDLSQ 11 (26)
T ss_pred CccCEEECCC
Confidence 3455555544
No 77
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=25.01 E-value=25 Score=26.84 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.3
Q ss_pred cCCCCCCceecCCCccccCCCCccC
Q 044237 187 LRDLDSLTSFCSANYTFKFPSLQDL 211 (212)
Q Consensus 187 l~~cp~L~~~~~~~~~~~~p~L~~l 211 (212)
|.++|.-+.+++|++..+|++..+|
T Consensus 69 i~~LPG~K~m~rGNHDYWw~s~skl 93 (230)
T COG1768 69 IGDLPGTKYMIRGNHDYWWSSISKL 93 (230)
T ss_pred hhcCCCcEEEEecCCccccchHHHH
Confidence 5678999999999999999986554
Done!