Query 044237
Match_columns 212
No_of_seqs 204 out of 1299
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 22:24:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.6 2.4E-14 8.3E-19 117.4 13.8 175 12-210 103-305 (328)
2 4fcg_A Uncharacterized protein 99.6 4.9E-14 1.7E-18 115.6 14.3 178 12-211 80-282 (328)
3 3zyj_A Leucine-rich repeat-con 99.4 3.7E-12 1.3E-16 108.2 14.9 139 6-158 57-195 (440)
4 2xwt_C Thyrotropin receptor; s 99.4 7.4E-12 2.5E-16 97.7 14.4 138 6-158 25-166 (239)
5 2xwt_C Thyrotropin receptor; s 99.4 1E-11 3.5E-16 96.9 13.1 173 11-211 53-231 (239)
6 3zyi_A Leucine-rich repeat-con 99.3 1.8E-11 6E-16 104.3 14.2 139 6-158 68-206 (452)
7 1ozn_A Reticulon 4 receptor; N 99.3 2.9E-11 9.9E-16 96.7 13.9 139 6-158 25-163 (285)
8 2o6q_A Variable lymphocyte rec 99.3 2.1E-11 7.3E-16 96.9 13.0 138 6-158 30-167 (270)
9 2ast_B S-phase kinase-associat 99.3 5.8E-13 2E-17 108.8 2.5 139 11-160 91-234 (336)
10 3zyj_A Leucine-rich repeat-con 99.3 3.2E-11 1.1E-15 102.4 12.6 177 11-211 86-284 (440)
11 1ozn_A Reticulon 4 receptor; N 99.3 2.6E-11 8.8E-16 97.0 11.2 135 11-159 54-188 (285)
12 1p9a_G Platelet glycoprotein I 99.3 8.9E-11 3.1E-15 94.5 13.7 167 6-199 24-190 (290)
13 4ezg_A Putative uncharacterize 99.3 4.1E-11 1.4E-15 90.9 10.9 152 9-190 40-191 (197)
14 3zyi_A Leucine-rich repeat-con 99.3 6E-11 2E-15 101.0 12.9 177 11-211 97-295 (452)
15 3o53_A Protein LRIM1, AGAP0063 99.2 1.1E-10 3.7E-15 94.9 12.3 184 12-211 33-242 (317)
16 3rfs_A Internalin B, repeat mo 99.2 1.4E-10 4.7E-15 92.4 12.6 110 67-191 107-216 (272)
17 4ay9_X Follicle-stimulating ho 99.2 1.6E-10 5.6E-15 95.2 13.2 174 5-199 22-220 (350)
18 2z80_A TOLL-like receptor 2, v 99.2 5.8E-11 2E-15 97.8 10.2 185 11-211 74-306 (353)
19 3rfs_A Internalin B, repeat mo 99.2 1.7E-10 5.7E-15 91.9 12.4 172 11-211 39-210 (272)
20 2o6q_A Variable lymphocyte rec 99.2 1.5E-10 5.2E-15 91.9 12.2 158 11-191 59-216 (270)
21 2ast_B S-phase kinase-associat 99.2 7E-12 2.4E-16 102.3 4.2 162 11-190 116-282 (336)
22 3m19_A Variable lymphocyte rec 99.2 2E-10 6.9E-15 90.3 12.4 163 6-191 28-190 (251)
23 2z66_A Variable lymphocyte rec 99.2 9.9E-11 3.4E-15 94.4 10.5 187 6-211 21-228 (306)
24 2z62_A TOLL-like receptor 4, v 99.2 3.9E-10 1.3E-14 89.7 13.8 139 6-158 21-159 (276)
25 2id5_A Lingo-1, leucine rich r 99.2 5.1E-10 1.7E-14 95.7 15.2 173 6-198 25-218 (477)
26 3vq2_A TLR4, TOLL-like recepto 99.2 1.4E-10 4.7E-15 101.9 11.2 183 9-211 346-550 (606)
27 3oja_A Leucine-rich immune mol 99.2 2.5E-10 8.5E-15 98.4 11.9 135 12-159 33-180 (487)
28 2z80_A TOLL-like receptor 2, v 99.2 1.7E-10 5.8E-15 95.0 10.3 140 6-159 45-185 (353)
29 4fmz_A Internalin; leucine ric 99.1 3.8E-10 1.3E-14 92.4 12.0 174 10-212 152-339 (347)
30 2z63_A TOLL-like receptor 4, v 99.1 4.4E-10 1.5E-14 97.8 12.7 61 95-158 419-480 (570)
31 2id5_A Lingo-1, leucine rich r 99.1 3.7E-10 1.3E-14 96.5 11.8 133 11-158 126-258 (477)
32 3oja_B Anopheles plasmodium-re 99.1 6.3E-10 2.2E-14 98.0 13.4 43 11-55 49-91 (597)
33 2z66_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 91.3 10.7 164 11-191 50-234 (306)
34 3o6n_A APL1; leucine-rich repe 99.1 1.1E-09 3.7E-14 91.3 13.9 42 11-54 43-84 (390)
35 1h6u_A Internalin H; cell adhe 99.1 5.7E-10 2E-14 90.4 11.5 167 11-211 39-222 (308)
36 4fmz_A Internalin; leucine ric 99.1 4.7E-10 1.6E-14 91.9 10.9 124 11-158 42-165 (347)
37 3t6q_A CD180 antigen; protein- 99.1 1.3E-09 4.4E-14 95.7 13.9 36 11-48 276-311 (606)
38 1h6u_A Internalin H; cell adhe 99.1 9E-10 3.1E-14 89.3 12.0 154 11-191 61-228 (308)
39 1xku_A Decorin; proteoglycan, 99.1 3.5E-09 1.2E-13 86.2 14.6 47 6-54 45-91 (330)
40 4ezg_A Putative uncharacterize 99.1 1.4E-09 4.9E-14 82.3 11.3 147 35-212 41-187 (197)
41 4ay9_X Follicle-stimulating ho 99.1 1.5E-09 5.2E-14 89.4 12.1 175 11-211 52-251 (350)
42 3vq2_A TLR4, TOLL-like recepto 99.1 1E-09 3.5E-14 96.3 11.6 185 5-211 320-526 (606)
43 1xku_A Decorin; proteoglycan, 99.0 3.6E-09 1.2E-13 86.2 13.7 13 179-191 292-304 (330)
44 2o6s_A Variable lymphocyte rec 99.0 1.5E-09 5.1E-14 82.7 10.7 139 6-159 21-159 (208)
45 3v47_A TOLL-like receptor 5B a 99.0 2.6E-09 8.9E-14 90.5 13.1 103 96-211 298-400 (455)
46 4g8a_A TOLL-like receptor 4; l 99.0 1E-09 3.4E-14 96.3 10.8 140 6-159 45-184 (635)
47 1h6t_A Internalin B; cell adhe 99.0 2E-09 6.7E-14 86.6 11.6 123 11-158 44-166 (291)
48 3t6q_A CD180 antigen; protein- 99.0 2.6E-09 8.8E-14 93.8 13.3 38 11-49 299-336 (606)
49 2z81_A CD282 antigen, TOLL-lik 99.0 1.1E-09 3.6E-14 95.1 10.6 177 12-211 309-502 (549)
50 1o6v_A Internalin A; bacterial 99.0 4E-09 1.4E-13 90.1 13.1 35 11-48 197-231 (466)
51 1p9a_G Platelet glycoprotein I 99.0 4.3E-09 1.5E-13 84.6 11.7 154 11-191 53-206 (290)
52 3o6n_A APL1; leucine-rich repe 99.0 8.8E-09 3E-13 85.8 14.0 130 11-158 67-196 (390)
53 2z81_A CD282 antigen, TOLL-lik 99.0 1.7E-09 5.7E-14 93.8 9.9 140 6-159 19-159 (549)
54 3oja_B Anopheles plasmodium-re 99.0 6.6E-09 2.3E-13 91.5 13.8 130 11-158 73-202 (597)
55 3j0a_A TOLL-like receptor 5; m 99.0 4.6E-09 1.6E-13 96.0 12.7 141 6-159 18-159 (844)
56 1m9s_A Internalin B; cell inva 99.0 2.5E-09 8.4E-14 94.5 10.5 102 67-191 107-208 (605)
57 2p1m_B Transport inhibitor res 99.0 2.1E-10 7.2E-15 100.3 3.5 60 95-156 182-243 (594)
58 3e6j_A Variable lymphocyte rec 99.0 4.3E-09 1.5E-13 81.7 10.5 139 5-159 32-170 (229)
59 1h6t_A Internalin B; cell adhe 99.0 3.5E-09 1.2E-13 85.1 10.1 146 10-190 65-210 (291)
60 3bz5_A Internalin-J, INLJ; leu 99.0 2.9E-09 9.9E-14 91.0 10.0 137 8-165 143-303 (457)
61 1ziw_A TOLL-like receptor 3; i 99.0 3.9E-09 1.3E-13 93.9 11.1 164 6-190 18-181 (680)
62 4eco_A Uncharacterized protein 98.9 7.3E-10 2.5E-14 98.4 6.3 133 11-158 204-363 (636)
63 2ft3_A Biglycan; proteoglycan, 98.9 4E-09 1.4E-13 86.0 10.1 94 94-193 214-307 (332)
64 2v9t_B SLIT homolog 2 protein 98.9 7.6E-09 2.6E-13 79.8 11.1 139 6-159 25-163 (220)
65 3o53_A Protein LRIM1, AGAP0063 98.9 6.8E-09 2.3E-13 84.3 11.2 163 11-193 56-250 (317)
66 3rgz_A Protein brassinosteroid 98.9 1.6E-08 5.5E-13 91.6 14.7 62 96-160 631-692 (768)
67 1ogq_A PGIP-2, polygalacturona 98.9 5.3E-09 1.8E-13 84.9 10.4 39 11-52 74-114 (313)
68 2z62_A TOLL-like receptor 4, v 98.9 1.2E-08 4.2E-13 80.9 12.2 115 11-138 50-164 (276)
69 1m9s_A Internalin B; cell inva 98.9 6.2E-09 2.1E-13 92.0 11.3 145 11-190 41-185 (605)
70 2ft3_A Biglycan; proteoglycan, 98.9 9.3E-09 3.2E-13 83.8 11.6 112 6-133 47-158 (332)
71 3v47_A TOLL-like receptor 5B a 98.9 7.3E-09 2.5E-13 87.7 11.1 141 6-159 24-165 (455)
72 2z63_A TOLL-like receptor 4, v 98.9 4.6E-09 1.6E-13 91.3 10.1 166 9-191 343-529 (570)
73 1ogq_A PGIP-2, polygalacturona 98.9 1.2E-08 4E-13 82.8 11.8 59 13-79 50-111 (313)
74 4ecn_A Leucine-rich repeat pro 98.9 2.1E-09 7.1E-14 98.6 7.8 139 7-159 440-606 (876)
75 1o6v_A Internalin A; bacterial 98.9 1.3E-08 4.5E-13 86.8 12.3 42 9-54 173-214 (466)
76 3m19_A Variable lymphocyte rec 98.9 7.1E-09 2.4E-13 81.3 9.6 134 11-159 57-190 (251)
77 2ell_A Acidic leucine-rich nuc 98.9 5.7E-09 2E-13 76.8 8.2 112 67-191 47-158 (168)
78 3rgz_A Protein brassinosteroid 98.9 7.2E-09 2.4E-13 93.8 10.3 111 67-192 440-550 (768)
79 2v70_A SLIT-2, SLIT homolog 2 98.9 1.7E-08 6E-13 77.7 10.9 139 6-159 25-164 (220)
80 1wwl_A Monocyte differentiatio 98.9 3.6E-09 1.2E-13 85.8 6.7 139 12-159 94-239 (312)
81 1wwl_A Monocyte differentiatio 98.9 5.7E-09 2E-13 84.5 7.8 176 10-211 118-301 (312)
82 2z7x_B TOLL-like receptor 1, v 98.8 6.5E-08 2.2E-12 83.4 14.7 135 6-160 14-150 (520)
83 2ell_A Acidic leucine-rich nuc 98.8 7E-09 2.4E-13 76.3 7.3 134 10-160 21-159 (168)
84 4ecn_A Leucine-rich repeat pro 98.8 3.3E-08 1.1E-12 90.7 12.9 163 13-194 673-841 (876)
85 2z7x_B TOLL-like receptor 1, v 98.8 1.9E-08 6.6E-13 86.7 10.8 32 178-211 442-473 (520)
86 3ogk_B Coronatine-insensitive 98.8 6.1E-10 2.1E-14 97.4 1.1 14 178-191 511-524 (592)
87 2xot_A Amphoterin-induced prot 98.8 2.2E-08 7.6E-13 82.8 10.4 139 6-159 32-174 (361)
88 3oja_A Leucine-rich immune mol 98.8 3.7E-08 1.3E-12 84.7 11.2 165 11-198 56-231 (487)
89 1ziw_A TOLL-like receptor 3; i 98.8 8.1E-08 2.8E-12 85.4 13.7 135 11-159 47-182 (680)
90 2o6s_A Variable lymphocyte rec 98.8 8.1E-08 2.8E-12 73.0 11.8 149 16-190 10-158 (208)
91 1xeu_A Internalin C; cellular 98.8 4.9E-08 1.7E-12 77.3 10.6 145 10-190 38-182 (263)
92 4eco_A Uncharacterized protein 98.8 4.6E-08 1.6E-12 86.8 11.4 87 66-159 203-316 (636)
93 4glp_A Monocyte differentiatio 98.8 1.1E-08 3.6E-13 82.8 6.6 87 68-159 144-235 (310)
94 1xeu_A Internalin C; cellular 98.8 1.2E-08 4.1E-13 80.8 6.6 164 8-211 14-177 (263)
95 2je0_A Acidic leucine-rich nuc 98.7 8.9E-09 3E-13 74.2 5.1 84 67-158 40-123 (149)
96 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 7.6E-08 2.6E-12 83.9 12.0 127 67-211 375-502 (562)
97 3g06_A SSPH2 (leucine-rich rep 98.7 1.1E-07 3.7E-12 84.3 13.0 42 6-53 54-95 (622)
98 3e6j_A Variable lymphocyte rec 98.7 1.3E-07 4.5E-12 73.2 12.0 150 15-191 21-170 (229)
99 2p1m_B Transport inhibitor res 98.7 4.3E-09 1.5E-13 91.9 3.9 144 11-163 64-226 (594)
100 4glp_A Monocyte differentiatio 98.7 5.2E-09 1.8E-13 84.6 4.1 176 10-211 114-299 (310)
101 3bz5_A Internalin-J, INLJ; leu 98.7 2.7E-08 9.3E-13 85.0 8.7 136 8-164 165-323 (457)
102 3g06_A SSPH2 (leucine-rich rep 98.7 1.2E-07 4E-12 84.1 12.3 38 11-54 79-116 (622)
103 4g8a_A TOLL-like receptor 4; l 98.7 6.2E-08 2.1E-12 84.9 9.7 109 67-189 467-576 (635)
104 3ogk_B Coronatine-insensitive 98.7 9E-09 3.1E-13 89.9 4.3 35 11-47 162-201 (592)
105 2v70_A SLIT-2, SLIT homolog 2 98.7 2E-07 6.8E-12 71.8 11.4 151 16-191 14-164 (220)
106 2v9t_B SLIT homolog 2 protein 98.7 2.9E-07 9.9E-12 70.8 12.3 150 16-191 14-163 (220)
107 3a79_B TLR6, VLRB.59, TOLL-lik 98.6 2.3E-07 7.8E-12 80.9 11.9 134 6-160 45-181 (562)
108 2je0_A Acidic leucine-rich nuc 98.6 1.5E-08 5E-13 73.1 3.6 130 11-157 15-149 (149)
109 2o6r_A Variable lymphocyte rec 98.6 1.6E-07 5.4E-12 69.6 8.9 126 16-159 10-135 (177)
110 3j0a_A TOLL-like receptor 5; m 98.6 5.2E-07 1.8E-11 82.5 12.3 137 11-160 46-186 (844)
111 1jl5_A Outer protein YOPM; leu 98.6 6.9E-07 2.4E-11 76.1 12.1 13 178-190 235-247 (454)
112 1jl5_A Outer protein YOPM; leu 98.5 6.1E-07 2.1E-11 76.5 11.4 11 180-190 277-287 (454)
113 2xot_A Amphoterin-induced prot 98.5 1.2E-06 4E-11 72.3 12.4 152 16-190 21-173 (361)
114 2o6r_A Variable lymphocyte rec 98.5 7E-07 2.4E-11 66.0 10.0 115 6-133 21-135 (177)
115 3e4g_A ATP synthase subunit S, 98.5 9.1E-08 3.1E-12 71.2 4.5 87 70-161 62-152 (176)
116 1a9n_A U2A', U2A'; complex (nu 98.5 3.3E-07 1.1E-11 67.8 7.5 132 12-160 18-152 (176)
117 2wfh_A SLIT homolog 2 protein 98.5 8.3E-07 2.8E-11 66.9 9.6 111 7-131 25-135 (193)
118 1a9n_A U2A', U2A'; complex (nu 98.5 3.5E-07 1.2E-11 67.7 7.4 136 36-192 17-152 (176)
119 1w8a_A SLIT protein; signaling 98.5 6.2E-07 2.1E-11 67.4 8.7 41 7-47 23-63 (192)
120 3cvr_A Invasion plasmid antige 98.5 9E-07 3.1E-11 77.6 10.8 36 7-47 74-109 (571)
121 2wfh_A SLIT homolog 2 protein 98.4 1.3E-06 4.5E-11 65.8 9.7 125 16-159 13-137 (193)
122 3e4g_A ATP synthase subunit S, 98.4 1.1E-07 3.9E-12 70.7 3.5 39 98-137 62-100 (176)
123 1w8a_A SLIT protein; signaling 98.4 2.2E-06 7.5E-11 64.4 9.6 127 16-159 11-137 (192)
124 2ca6_A RAN GTPase-activating p 98.3 2.1E-07 7.3E-12 77.3 3.1 37 11-49 92-133 (386)
125 3cvr_A Invasion plasmid antige 98.3 4.2E-06 1.4E-10 73.4 10.2 145 6-192 94-242 (571)
126 1dce_A Protein (RAB geranylger 98.2 3.9E-06 1.3E-10 73.5 9.4 126 38-186 441-566 (567)
127 4b8c_D Glucose-repressible alc 98.1 2.3E-06 7.8E-11 77.1 5.4 110 33-160 219-328 (727)
128 2ca6_A RAN GTPase-activating p 98.1 6.2E-07 2.1E-11 74.5 1.3 13 179-191 273-285 (386)
129 1ds9_A Outer arm dynein; leuci 98.1 3.5E-07 1.2E-11 69.1 -0.2 128 13-160 23-152 (198)
130 3sb4_A Hypothetical leucine ri 98.1 1.9E-05 6.6E-10 64.1 9.8 102 96-212 225-327 (329)
131 4b8c_D Glucose-repressible alc 98.1 3.8E-06 1.3E-10 75.7 5.9 106 11-133 222-327 (727)
132 2ra8_A Uncharacterized protein 98.0 1.6E-05 5.4E-10 65.9 8.5 162 11-191 137-318 (362)
133 1z7x_W Ribonuclease inhibitor; 98.0 1.2E-06 4E-11 74.1 1.8 92 94-190 110-209 (461)
134 1z7x_W Ribonuclease inhibitor; 98.0 1E-06 3.5E-11 74.5 1.1 16 179-195 255-270 (461)
135 2r9u_A Variable lymphocyte rec 98.0 1.5E-05 5.2E-10 58.9 6.7 102 16-133 15-116 (174)
136 1dce_A Protein (RAB geranylger 98.0 2.2E-05 7.4E-10 68.8 8.2 158 33-211 404-565 (567)
137 1ds9_A Outer arm dynein; leuci 97.9 7.1E-07 2.4E-11 67.3 -1.8 125 11-154 46-180 (198)
138 3g39_A Variable lymphocyte rec 97.9 2.6E-05 9E-10 57.3 6.7 102 15-132 11-112 (170)
139 3goz_A Leucine-rich repeat-con 97.9 4.9E-06 1.7E-10 68.5 2.8 36 13-48 80-119 (362)
140 2r9u_A Variable lymphocyte rec 97.9 5E-05 1.7E-09 56.0 8.0 84 68-158 32-115 (174)
141 3g39_A Variable lymphocyte rec 97.9 5.8E-05 2E-09 55.4 7.9 84 68-158 29-112 (170)
142 3goz_A Leucine-rich repeat-con 97.8 8.1E-06 2.8E-10 67.2 2.2 39 12-52 21-64 (362)
143 3sb4_A Hypothetical leucine ri 97.8 0.00022 7.5E-09 57.7 10.6 81 68-157 225-306 (329)
144 2ra8_A Uncharacterized protein 97.6 6.7E-05 2.3E-09 62.1 5.7 135 11-159 170-318 (362)
145 2ifg_A High affinity nerve gro 97.5 0.00054 1.9E-08 55.7 9.1 86 67-159 29-114 (347)
146 2ifg_A High affinity nerve gro 97.3 0.0004 1.4E-08 56.5 6.8 102 17-133 12-114 (347)
147 3un9_A NLR family member X1; l 97.1 4.4E-05 1.5E-09 63.4 -1.1 167 11-191 70-250 (372)
148 4fdw_A Leucine rich hypothetic 97.1 0.011 3.7E-07 49.4 12.9 32 14-47 158-189 (401)
149 4fdw_A Leucine rich hypothetic 97.0 0.011 3.7E-07 49.4 12.2 36 14-54 136-171 (401)
150 3un9_A NLR family member X1; l 96.4 0.00024 8.1E-09 58.9 -2.4 142 13-159 101-250 (372)
151 3rw6_A Nuclear RNA export fact 92.8 0.11 3.7E-06 40.9 4.3 65 35-108 167-231 (267)
152 3rfe_A Platelet glycoprotein I 91.1 0.16 5.4E-06 35.2 3.1 41 6-47 24-64 (130)
153 3rw6_A Nuclear RNA export fact 89.6 0.35 1.2E-05 38.0 4.2 12 120-131 194-205 (267)
154 1io0_A Tropomodulin; LRR prote 85.5 0.14 4.7E-06 37.6 -0.3 17 35-51 33-49 (185)
155 4fs7_A Uncharacterized protein 84.3 1.9 6.6E-05 35.2 6.1 33 12-46 70-102 (394)
156 4gt6_A Cell surface protein; l 84.0 8.6 0.00029 31.2 9.9 11 145-155 331-341 (394)
157 4fs7_A Uncharacterized protein 82.7 7 0.00024 31.8 8.8 34 12-47 229-262 (394)
158 4gt6_A Cell surface protein; l 82.6 6.1 0.00021 32.1 8.5 115 25-158 253-367 (394)
159 4h09_A Hypothetical leucine ri 81.9 12 0.00042 29.9 10.0 10 36-45 215-224 (379)
160 4h09_A Hypothetical leucine ri 40.8 1.1E+02 0.0038 24.1 7.8 102 12-129 239-340 (379)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.58 E-value=2.4e-14 Score=117.41 Aligned_cols=175 Identities=19% Similarity=0.224 Sum_probs=91.6
Q ss_pred cCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccC--
Q 044237 12 FGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQD-- 89 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~-- 89 (212)
+++|++|+++++.+..+|.. ++.+++|++|++++| .++.++... ..+++|++|++++|..+..++...
T Consensus 103 l~~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~Ls~n-~l~~lp~~l-------~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDT--MQQFAGLETLTLARN-PLRALPASI-------ASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSC--GGGGTTCSEEEEESC-CCCCCCGGG-------GGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred CCCCCEEECCCCCccchhHH--HhccCCCCEEECCCC-ccccCcHHH-------hcCcCCCEEECCCCCCccccChhHhh
Confidence 66677777764444455543 346666666666664 444333211 134455555555443333322110
Q ss_pred --------------------------CccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhh
Q 044237 90 --------------------------SKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSST 143 (212)
Q Consensus 90 --------------------------~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~ 143 (212)
+.....+++|++|++++|. +..+++ ....+++|++|++++|.....++. .
T Consensus 173 ~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~--~ 248 (328)
T 4fcg_A 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGP-AIHHLPKLEELDLRGCTALRNYPP--I 248 (328)
T ss_dssp EC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCG-GGGGCTTCCEEECTTCTTCCBCCC--C
T ss_pred ccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCch-hhccCCCCCEEECcCCcchhhhHH--H
Confidence 1112345556666665543 223222 245566666666666655444321 3
Q ss_pred HhcCCCCcEEeeeccccccccccccccccccccccCCccceeecCCCCCCceecCCCccccCCCCcc
Q 044237 144 AKTLVQLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLDSLTSFCSANYTFKFPSLQD 210 (212)
Q Consensus 144 ~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~L~~~~~~~~~~~~p~L~~ 210 (212)
...+++|++|++.+|.....+... ...+++|++|++.+|+.+..++.+- ..+++|+.
T Consensus 249 ~~~l~~L~~L~L~~n~~~~~~p~~--------~~~l~~L~~L~L~~n~~~~~iP~~l--~~L~~L~~ 305 (328)
T 4fcg_A 249 FGGRAPLKRLILKDCSNLLTLPLD--------IHRLTQLEKLDLRGCVNLSRLPSLI--AQLPANCI 305 (328)
T ss_dssp TTCCCCCCEEECTTCTTCCBCCTT--------GGGCTTCCEEECTTCTTCCCCCGGG--GGSCTTCE
T ss_pred hcCCCCCCEEECCCCCchhhcchh--------hhcCCCCCEEeCCCCCchhhccHHH--hhccCceE
Confidence 445666666666666655444321 2357888888888888888777642 23455443
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.57 E-value=4.9e-14 Score=115.57 Aligned_cols=178 Identities=17% Similarity=0.096 Sum_probs=109.1
Q ss_pred cCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCc
Q 044237 12 FGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSK 91 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~ 91 (212)
++++++|++.++.+..+|.. + ..+++|++|+++++ .++.++... ..+++|++|+++++ +++.++.
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~-l-~~l~~L~~L~L~~n-~l~~lp~~~-------~~l~~L~~L~Ls~n-~l~~lp~---- 144 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ-A-FRLSHLQHMTIDAA-GLMELPDTM-------QQFAGLETLTLARN-PLRALPA---- 144 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC-G-GGGTTCSEEEEESS-CCCCCCSCG-------GGGTTCSEEEEESC-CCCCCCG----
T ss_pred ccceeEEEccCCCchhcChh-h-hhCCCCCEEECCCC-CccchhHHH-------hccCCCCEEECCCC-ccccCcH----
Confidence 58999999997777788876 4 47999999999986 666554422 36899999999986 3555422
Q ss_pred cCCCcCcccEEEEecCccccccCCCCcc---------cCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecccccc
Q 044237 92 LGPIFQYLEILKVYDCQSLLILLPSSSV---------SFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMT 162 (212)
Q Consensus 92 ~~~~l~~L~~L~i~~C~~L~~l~~~~~~---------~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~ 162 (212)
....+++|++|++++|..+..++.. .. .+++|++|++++|. ++.++ .....+++|++|++.++.- .
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp--~~l~~l~~L~~L~L~~N~l-~ 219 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTG-IRSLP--ASIANLQNLKSLKIRNSPL-S 219 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEEC-CCCCC--GGGGGCTTCCEEEEESSCC-C
T ss_pred HHhcCcCCCEEECCCCCCccccChh-HhhccchhhhccCCCCCEEECcCCC-cCcch--HhhcCCCCCCEEEccCCCC-C
Confidence 2346778888888887766654322 22 26666666666652 33331 1244555566666555432 1
Q ss_pred cccccccc----------------ccccccccCCccceeecCCCCCCceecCCCccccCCCCccC
Q 044237 163 EVVINDKE----------------GVEKEEIVFRKLKMLELRDLDSLTSFCSANYTFKFPSLQDL 211 (212)
Q Consensus 163 ~i~~~~~~----------------~~~~~~~~~p~L~~L~l~~cp~L~~~~~~~~~~~~p~L~~l 211 (212)
.++..-+. ........+++|++|++.+|..+..++.. -..+++|++|
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~--~~~l~~L~~L 282 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD--IHRLTQLEKL 282 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT--GGGCTTCCEE
T ss_pred cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh--hhcCCCCCEE
Confidence 22110000 00011225678888888888877776654 2345666655
No 3
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.42 E-value=3.7e-12 Score=108.17 Aligned_cols=139 Identities=15% Similarity=0.135 Sum_probs=85.6
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+|.+..++++.|+++.+.+..++.. .++.+++|++|+++++ .++.+.+. ....+++|++|++++. +++.+
T Consensus 57 ~iP~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n-~i~~i~~~------~~~~l~~L~~L~L~~n-~l~~~ 127 (440)
T 3zyj_A 57 EVPDGISTNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRN-HIRTIEIG------AFNGLANLNTLELFDN-RLTTI 127 (440)
T ss_dssp SCCSCCCTTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSS-CCCEECGG------GGTTCSSCCEEECCSS-CCSSC
T ss_pred cCCCCCCCCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCC-cCCccChh------hccCCccCCEEECCCC-cCCee
Confidence 56777778899999996667777655 5668899999999885 56655431 1224677777777765 45544
Q ss_pred cccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecc
Q 044237 86 CKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMREC 158 (212)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c 158 (212)
... ....+++|++|+++++. ++.+.+.....+++|++|++++|..+..+.. .....+++|++|++.++
T Consensus 128 ~~~---~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 128 PNG---AFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp CTT---TSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTS
T ss_pred CHh---HhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCc-chhhcccccCeecCCCC
Confidence 221 22345666666666653 3333333344566666666666666655432 23445566666666655
No 4
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.40 E-value=7.4e-12 Score=97.73 Aligned_cols=138 Identities=10% Similarity=0.131 Sum_probs=83.0
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+|. ..++|++|+++.+.++.+|.. .++.+++|++|+++++..++.+.+.. ...+++|++|++++|.+++.+
T Consensus 25 ~ip~-~~~~l~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~~------f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 25 RIPS-LPPSTQTLKLIETHLRTIPSH-AFSNLPNISRIYVSIDVTLQQLESHS------FYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp SCCC-CCTTCCEEEEESCCCSEECTT-TTTTCTTCCEEEEECCSSCCEECTTT------EESCTTCCEEEEEEETTCCEE
T ss_pred ccCC-CCCcccEEEEeCCcceEECHH-HccCCCCCcEEeCCCCCCcceeCHhH------cCCCcCCcEEECCCCCCeeEc
Confidence 3444 445788888886667777765 45678888888888865476655421 124677888888776666665
Q ss_pred cccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCC---eEEEcCCCCCceecchhhHhcCCCCc-EEeeecc
Q 044237 86 CKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLT---EIVAFGCKELIHLVTSSTAKTLVQLV-TVRMREC 158 (212)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~---~L~i~~C~~L~~l~~~~~~~~l~~L~-~L~i~~c 158 (212)
... ....+++|++|+++++. ++.+ |. ...+++|+ +|+++++++++.+.. .....+++|+ +|++.++
T Consensus 97 ~~~---~f~~l~~L~~L~l~~n~-l~~l-p~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 97 DPD---ALKELPLLKFLGIFNTG-LKMF-PD-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp CTT---SEECCTTCCEEEEEEEC-CCSC-CC-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSC
T ss_pred CHH---HhCCCCCCCEEeCCCCC-Cccc-cc-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCC
Confidence 321 12345667777777653 3332 32 34455555 666666655555532 2344566666 6666554
No 5
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.36 E-value=1e-11 Score=96.94 Aligned_cols=173 Identities=11% Similarity=0.062 Sum_probs=123.7
Q ss_pred ccCCccEEEEcCCC-CceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccC
Q 044237 11 LFGSLKQLNIGGDD-SACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQD 89 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~-~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~ 89 (212)
.+++|++|+++.+. +..+|.. .++.+++|++|++++|..++.+.+.. ...+++|++|+++++. ++.+..
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~~~------f~~l~~L~~L~l~~n~-l~~lp~-- 122 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDPDA------LKELPLLKFLGIFNTG-LKMFPD-- 122 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECTTS------EECCTTCCEEEEEEEC-CCSCCC--
T ss_pred CCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCHHH------hCCCCCCCEEeCCCCC-Cccccc--
Confidence 47899999999554 7777765 55689999999999988898775421 2257899999999863 555422
Q ss_pred CccCCCcCccc---EEEEecCccccccCCCCcccCCCCC-eEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccc
Q 044237 90 SKLGPIFQYLE---ILKVYDCQSLLILLPSSSVSFRNLT-EIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVV 165 (212)
Q Consensus 90 ~~~~~~l~~L~---~L~i~~C~~L~~l~~~~~~~l~~L~-~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~ 165 (212)
...+++|+ .|++++++.++.+.+.....+++|+ .|+++++. ++.+.. ..... ++|++|++.++..++.+.
T Consensus 123 ---~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~-~~~~~-~~L~~L~L~~n~~l~~i~ 196 (239)
T 2xwt_C 123 ---LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQG-YAFNG-TKLDAVYLNKNKYLTVID 196 (239)
T ss_dssp ---CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECT-TTTTT-CEEEEEECTTCTTCCEEC
T ss_pred ---cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCH-hhcCC-CCCCEEEcCCCCCcccCC
Confidence 23455666 9999999788887665466788999 99998874 555543 22233 789999999997676654
Q ss_pred cccccccccccccC-CccceeecCCCCCCceecCCCccccCCCCccC
Q 044237 166 INDKEGVEKEEIVF-RKLKMLELRDLDSLTSFCSANYTFKFPSLQDL 211 (212)
Q Consensus 166 ~~~~~~~~~~~~~~-p~L~~L~l~~cp~L~~~~~~~~~~~~p~L~~l 211 (212)
... ...+ ++|+.|++.+ ..++.++.. .|++|+.|
T Consensus 197 ~~~-------~~~l~~~L~~L~l~~-N~l~~l~~~----~~~~L~~L 231 (239)
T 2xwt_C 197 KDA-------FGGVYSGPSLLDVSQ-TSVTALPSK----GLEHLKEL 231 (239)
T ss_dssp TTT-------TTTCSBCCSEEECTT-CCCCCCCCT----TCTTCSEE
T ss_pred HHH-------hhccccCCcEEECCC-CccccCChh----HhccCcee
Confidence 321 1245 8899999988 456666653 46777654
No 6
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.34 E-value=1.8e-11 Score=104.31 Aligned_cols=139 Identities=16% Similarity=0.126 Sum_probs=85.8
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+|.+..++|++|+++.+.+..++.. .++.+++|++|+++++ .++.+.+. ....+++|++|++++. +++.+
T Consensus 68 ~iP~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n-~i~~~~~~------~~~~l~~L~~L~L~~n-~l~~~ 138 (452)
T 3zyi_A 68 EVPQGIPSNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRN-SIRQIEVG------AFNGLASLNTLELFDN-WLTVI 138 (452)
T ss_dssp SCCSCCCTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSS-CCCEECTT------TTTTCTTCCEEECCSS-CCSBC
T ss_pred ccCCCCCCCccEEECcCCcCceECHH-HcCCCCCCCEEECCCC-ccCCcChh------hccCcccCCEEECCCC-cCCcc
Confidence 46666678999999996666666555 5668999999999885 66665432 1224677777777765 24444
Q ss_pred cccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecc
Q 044237 86 CKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMREC 158 (212)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c 158 (212)
.. .....+++|++|+++++. ++.+.+.....+++|++|++++|..+..+.. .....+++|++|++.++
T Consensus 139 ~~---~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 139 PS---GAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp CT---TTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTS
T ss_pred Ch---hhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCC
Confidence 22 112346666777766653 3444333344566666666666666665532 23445566666666655
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.33 E-value=2.9e-11 Score=96.70 Aligned_cols=139 Identities=17% Similarity=0.153 Sum_probs=79.8
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+|.+..++|++|+++++.+..+|.. .++.+++|++|+++++ .++.+.+. ....+++|++|+++++..++.+
T Consensus 25 ~ip~~~~~~l~~L~l~~n~i~~~~~~-~~~~~~~L~~L~l~~n-~l~~~~~~------~~~~l~~L~~L~l~~n~~l~~~ 96 (285)
T 1ozn_A 25 AVPVGIPAASQRIFLHGNRISHVPAA-SFRACRNLTILWLHSN-VLARIDAA------AFTGLALLEQLDLSDNAQLRSV 96 (285)
T ss_dssp SCCTTCCTTCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSS-CCCEECTT------TTTTCTTCCEEECCSCTTCCCC
T ss_pred cCCcCCCCCceEEEeeCCcCCccCHH-HcccCCCCCEEECCCC-ccceeCHh------hcCCccCCCEEeCCCCCCcccc
Confidence 45666778999999996667777755 4568899999999885 66655331 1224677777777776545544
Q ss_pred cccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecc
Q 044237 86 CKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMREC 158 (212)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c 158 (212)
.. .....+++|++|+++++. +..+.+.....+++|++|+++++. ++.+.. .....+++|++|++.++
T Consensus 97 ~~---~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 97 DP---ATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA-LQALPD-DTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp CT---TTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS
T ss_pred CH---HHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCc-ccccCH-hHhccCCCccEEECCCC
Confidence 21 112345566666666553 222223323445555666555543 222211 12344555555555554
No 8
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.32 E-value=2.1e-11 Score=96.91 Aligned_cols=138 Identities=19% Similarity=0.153 Sum_probs=79.7
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+|....++|++|+++++.+..+|.. .++.+++|++|+++++ .++.+.... ...+++|++|++++.. ++.+
T Consensus 30 ~ip~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~i~~~~------~~~l~~L~~L~l~~n~-l~~~ 100 (270)
T 2o6q_A 30 AIPSNIPADTKKLDLQSNKLSSLPSK-AFHRLTKLRLLYLNDN-KLQTLPAGI------FKELKNLETLWVTDNK-LQAL 100 (270)
T ss_dssp SCCSCCCTTCSEEECCSSCCSCCCTT-SSSSCTTCCEEECCSS-CCSCCCTTT------TSSCTTCCEEECCSSC-CCCC
T ss_pred ccCCCCCCCCCEEECcCCCCCeeCHH-HhcCCCCCCEEECCCC-ccCeeChhh------hcCCCCCCEEECCCCc-CCcC
Confidence 34555567788888886566666654 4568888888888874 555443311 1246777777777642 4433
Q ss_pred cccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecc
Q 044237 86 CKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMREC 158 (212)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c 158 (212)
.. .....+++|++|+++++. ++.+.+.....+++|++|+++++. ++.+.. .....+++|++|++.++
T Consensus 101 ~~---~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 101 PI---GVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNE-LQSLPK-GVFDKLTSLKELRLYNN 167 (270)
T ss_dssp CT---TTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS
T ss_pred CH---hHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCc-CCccCH-hHccCCcccceeEecCC
Confidence 21 122345667777776643 333333324456667777766653 443322 22345666666666665
No 9
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.30 E-value=5.8e-13 Score=108.77 Aligned_cols=139 Identities=12% Similarity=0.110 Sum_probs=72.4
Q ss_pred ccCCccEEEEcCCCCce--echHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCccccccccccc
Q 044237 11 LFGSLKQLNIGGDDSAC--FPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQ 88 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~--~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~ 88 (212)
.+++|++|+++++.... +|. .++.+++|++|++++|. +..... .....+++|++|++++|..++....
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~--~~~~~~~L~~L~L~~~~-l~~~~~------~~l~~~~~L~~L~L~~~~~l~~~~l- 160 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHG--ILSQCSKLQNLSLEGLR-LSDPIV------NTLAKNSNLVRLNLSGCSGFSEFAL- 160 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHH--HHTTBCCCSEEECTTCB-CCHHHH------HHHTTCTTCSEEECTTCBSCCHHHH-
T ss_pred cCCCCCEEEccCCCcCHHHHHH--HHhhCCCCCEEeCcCcc-cCHHHH------HHHhcCCCCCEEECCCCCCCCHHHH-
Confidence 46788888888333332 333 35678888888888873 331111 0112467777777777655542100
Q ss_pred CCccCCCcCcccEEEEecCcccccc-CCCCcccCC-CCCeEEEcCCC-CCceecchhhHhcCCCCcEEeeecccc
Q 044237 89 DSKLGPIFQYLEILKVYDCQSLLIL-LPSSSVSFR-NLTEIVAFGCK-ELIHLVTSSTAKTLVQLVTVRMRECRA 160 (212)
Q Consensus 89 ~~~~~~~l~~L~~L~i~~C~~L~~l-~~~~~~~l~-~L~~L~i~~C~-~L~~l~~~~~~~~l~~L~~L~i~~c~~ 160 (212)
......+++|++|++++|..++.. .+.....++ +|++|++++|. .+..-..+.....+++|++|++.+|..
T Consensus 161 -~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 161 -QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234 (336)
T ss_dssp -HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred -HHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence 011124566666666666544431 121134455 66666666664 332111122344566666666666654
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.28 E-value=3.2e-11 Score=102.36 Aligned_cols=177 Identities=15% Similarity=0.113 Sum_probs=88.7
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
.+++|++|+++.+.+..++.. .+..+++|++|+++++ +++.+.+.. ...+++|++|++++.. ++.+..
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~------~~~l~~L~~L~L~~N~-i~~~~~--- 153 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIG-AFNGLANLNTLELFDN-RLTTIPNGA------FVYLSKLKELWLRNNP-IESIPS--- 153 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGG-GGTTCSSCCEEECCSS-CCSSCCTTT------SCSCSSCCEEECCSCC-CCEECT---
T ss_pred CCCCCCEEECCCCcCCccChh-hccCCccCCEEECCCC-cCCeeCHhH------hhccccCceeeCCCCc-ccccCH---
Confidence 478899999996666667655 5668899999999885 666544310 1134555555555432 232211
Q ss_pred ccCCCcCcccEEEEecCccccccCCCC----------------------cccCCCCCeEEEcCCCCCceecchhhHhcCC
Q 044237 91 KLGPIFQYLEILKVYDCQSLLILLPSS----------------------SVSFRNLTEIVAFGCKELIHLVTSSTAKTLV 148 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l~~~~----------------------~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~ 148 (212)
.....+++|++|++++|..+..+.+.. ...+++|+.|+++++ +++.+.+ .....++
T Consensus 154 ~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~ 231 (440)
T 3zyj_A 154 YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN-HLSAIRP-GSFQGLM 231 (440)
T ss_dssp TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS-CCCEECT-TTTTTCT
T ss_pred HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCC-ccCccCh-hhhccCc
Confidence 111234444444444444444433322 334445555555544 2333322 2334455
Q ss_pred CCcEEeeeccccccccccccccccccccccCCccceeecCCCCCCceecCCCccccCCCCccC
Q 044237 149 QLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLDSLTSFCSANYTFKFPSLQDL 211 (212)
Q Consensus 149 ~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~L~~~~~~~~~~~~p~L~~l 211 (212)
+|++|++.++. +..+.. .....+++|+.|++.++ .++.+..+.. ..+++|+.|
T Consensus 232 ~L~~L~L~~n~-l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L 284 (440)
T 3zyj_A 232 HLQKLWMIQSQ-IQVIER-------NAFDNLQSLVEINLAHN-NLTLLPHDLF-TPLHHLERI 284 (440)
T ss_dssp TCCEEECTTCC-CCEECT-------TSSTTCTTCCEEECTTS-CCCCCCTTTT-SSCTTCCEE
T ss_pred cCCEEECCCCc-eeEECh-------hhhcCCCCCCEEECCCC-CCCccChhHh-ccccCCCEE
Confidence 55555555542 122211 01124577777777765 4454444321 124555543
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.28 E-value=2.6e-11 Score=97.01 Aligned_cols=135 Identities=19% Similarity=0.116 Sum_probs=86.0
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
.+++|++|+++.+.+..++.. .++.+++|++|+++++..++.+.+. ....+++|++|+++++. ++.+. +
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~------~~~~l~~L~~L~l~~n~-l~~~~---~ 122 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPA------TFHGLGRLHTLHLDRCG-LQELG---P 122 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTT------TTTTCTTCCEEECTTSC-CCCCC---T
T ss_pred cCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccCHH------HhcCCcCCCEEECCCCc-CCEEC---H
Confidence 478999999995566666444 4568999999999997656655331 12257788888888753 33331 1
Q ss_pred ccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccc
Q 044237 91 KLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECR 159 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 159 (212)
.....+++|++|+++++. ++.+.+.....+++|++|+++++ +++.+.. .....+++|++|++.++.
T Consensus 123 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 123 GLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISSVPE-RAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC
T ss_pred hHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCC-cccccCH-HHhcCccccCEEECCCCc
Confidence 223456777888777763 34433333456777777777776 3554432 234566777777777764
No 12
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.27 E-value=8.9e-11 Score=94.51 Aligned_cols=167 Identities=20% Similarity=0.172 Sum_probs=108.4
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+|.+..+++++|+++.+.+..++.. .+..+++|++|+++++ .++.+... ..+++|++|++++. +++.+
T Consensus 24 ~ip~~~~~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~--------~~l~~L~~L~Ls~N-~l~~l 92 (290)
T 1p9a_G 24 ALPPDLPKDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRA-ELTKLQVD--------GTLPVLGTLDLSHN-QLQSL 92 (290)
T ss_dssp SCCSCCCTTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTS-CCCEEECC--------SCCTTCCEEECCSS-CCSSC
T ss_pred cCCCCCCCCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCC-ccCcccCC--------CCCCcCCEEECCCC-cCCcC
Confidence 45666678889998886666666554 4568889999998874 66665432 25788888888875 45544
Q ss_pred cccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccc
Q 044237 86 CKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVV 165 (212)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~ 165 (212)
. .....+++|++|+++++ .++.+.+.....+++|++|+++++. ++.+.. .....+++|+.|++.++. +..+.
T Consensus 93 ~----~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~l~ 164 (290)
T 1p9a_G 93 P----LLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNE-LKTLPP-GLLTPTPKLEKLSLANNN-LTELP 164 (290)
T ss_dssp C----CCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECTTSC-CSCCC
T ss_pred c----hhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCC-CCccCh-hhcccccCCCEEECCCCc-CCccC
Confidence 2 22246778888888876 4555544445677888888888763 555432 334567888888888764 34433
Q ss_pred cccccccccccccCCccceeecCCCCCCceecCC
Q 044237 166 INDKEGVEKEEIVFRKLKMLELRDLDSLTSFCSA 199 (212)
Q Consensus 166 ~~~~~~~~~~~~~~p~L~~L~l~~cp~L~~~~~~ 199 (212)
... ...+++|+.|.+.+.. ++.++.+
T Consensus 165 ~~~-------~~~l~~L~~L~L~~N~-l~~ip~~ 190 (290)
T 1p9a_G 165 AGL-------LNGLENLDTLLLQENS-LYTIPKG 190 (290)
T ss_dssp TTT-------TTTCTTCCEEECCSSC-CCCCCTT
T ss_pred HHH-------hcCcCCCCEEECCCCc-CCccChh
Confidence 211 1246788888877653 4555543
No 13
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.26 E-value=4.1e-11 Score=90.90 Aligned_cols=152 Identities=12% Similarity=0.056 Sum_probs=93.5
Q ss_pred ccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCccccccccccc
Q 044237 9 QHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQ 88 (212)
Q Consensus 9 ~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~ 88 (212)
...+++|++|+++++.+..+|. ++.+++|++|++++| .++.+.. ...+++|++|+++++. ++...
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~~---l~~l~~L~~L~l~~n-~~~~~~~--------l~~l~~L~~L~l~~n~-l~~~~-- 104 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLTG---IEYAHNIKDLTINNI-HATNYNP--------ISGLSNLERLRIMGKD-VTSDK-- 104 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCTT---GGGCTTCSEEEEESC-CCSCCGG--------GTTCTTCCEEEEECTT-CBGGG--
T ss_pred hhhcCCccEEeccCCCccChHH---HhcCCCCCEEEccCC-CCCcchh--------hhcCCCCCEEEeECCc-cCccc--
Confidence 3457788888888555666662 347888888888887 4443221 2257788888887753 33211
Q ss_pred CCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecccccccccccc
Q 044237 89 DSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVIND 168 (212)
Q Consensus 89 ~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~ 168 (212)
+.....+++|++|++++|.--.. .+.....+++|++|++++|..+..+. ....+++|++|++.+|. +..+.
T Consensus 105 -~~~l~~l~~L~~L~Ls~n~i~~~-~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~-i~~~~--- 175 (197)
T 4ezg_A 105 -IPNLSGLTSLTLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDG-VHDYR--- 175 (197)
T ss_dssp -SCCCTTCTTCCEEECCSSBCBGG-GHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBC-CCCCT---
T ss_pred -ChhhcCCCCCCEEEecCCccCcH-hHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCC-CcChH---
Confidence 12234677888888887643222 22225567788888888876565542 35677888888887764 22221
Q ss_pred ccccccccccCCccceeecCCC
Q 044237 169 KEGVEKEEIVFRKLKMLELRDL 190 (212)
Q Consensus 169 ~~~~~~~~~~~p~L~~L~l~~c 190 (212)
....+++|++|++.+-
T Consensus 176 ------~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 176 ------GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp ------TGGGCSSCCEEEECBC
T ss_pred ------HhccCCCCCEEEeeCc
Confidence 1225677777777654
No 14
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.26 E-value=6e-11 Score=101.02 Aligned_cols=177 Identities=16% Similarity=0.114 Sum_probs=89.8
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
.+++|++|+++.+.+..++.. .+..+++|++|+++++ .++.+++.. ...+++|++|++++.. ++.+..
T Consensus 97 ~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~------~~~l~~L~~L~L~~N~-l~~~~~--- 164 (452)
T 3zyi_A 97 HLHHLEVLQLGRNSIRQIEVG-AFNGLASLNTLELFDN-WLTVIPSGA------FEYLSKLRELWLRNNP-IESIPS--- 164 (452)
T ss_dssp TCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSS-CCSBCCTTT------SSSCTTCCEEECCSCC-CCEECT---
T ss_pred CCCCCCEEECCCCccCCcChh-hccCcccCCEEECCCC-cCCccChhh------hcccCCCCEEECCCCC-cceeCH---
Confidence 477888888886566666654 4568888888888875 555544321 1134555555555432 333211
Q ss_pred ccCCCcCcccEEEEecCccccccCCCC----------------------cccCCCCCeEEEcCCCCCceecchhhHhcCC
Q 044237 91 KLGPIFQYLEILKVYDCQSLLILLPSS----------------------SVSFRNLTEIVAFGCKELIHLVTSSTAKTLV 148 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l~~~~----------------------~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~ 148 (212)
.....+++|++|++++|..+..+.+.. ...+++|+.|+++++. ++.+.+ ....+++
T Consensus 165 ~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~ 242 (452)
T 3zyi_A 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH-FPEIRP-GSFHGLS 242 (452)
T ss_dssp TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSC-CSEECG-GGGTTCT
T ss_pred hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCc-CcccCc-ccccCcc
Confidence 111234445555555544444433322 3344455555555442 223221 2344555
Q ss_pred CCcEEeeeccccccccccccccccccccccCCccceeecCCCCCCceecCCCccccCCCCccC
Q 044237 149 QLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLDSLTSFCSANYTFKFPSLQDL 211 (212)
Q Consensus 149 ~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~L~~~~~~~~~~~~p~L~~l 211 (212)
+|++|++.++.- ..+.. .....+++|+.|++.++ .++.+..+.. ..+++|+.|
T Consensus 243 ~L~~L~L~~n~l-~~~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L 295 (452)
T 3zyi_A 243 SLKKLWVMNSQV-SLIER-------NAFDGLASLVELNLAHN-NLSSLPHDLF-TPLRYLVEL 295 (452)
T ss_dssp TCCEEECTTSCC-CEECT-------TTTTTCTTCCEEECCSS-CCSCCCTTSS-TTCTTCCEE
T ss_pred CCCEEEeCCCcC-ceECH-------HHhcCCCCCCEEECCCC-cCCccChHHh-ccccCCCEE
Confidence 666666655432 22111 01224678888888776 4555554321 234555544
No 15
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.22 E-value=1.1e-10 Score=94.95 Aligned_cols=184 Identities=15% Similarity=0.082 Sum_probs=90.9
Q ss_pred cCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCccc--------ccc
Q 044237 12 FGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHY--------HLE 83 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~--------~L~ 83 (212)
+++|++|+++++.+..++.. .++.+++|++|++++| .+..+++.. .+++|++|+++++. +|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~~--------~l~~L~~L~Ls~n~l~~l~~~~~L~ 102 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSN-VLYETLDLE--------SLSTLRTLDLNNNYVQELLVGPSIE 102 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHH-HHTTCTTCCEEECTTS-CCEEEEEET--------TCTTCCEEECCSSEEEEEEECTTCC
T ss_pred CCCCCEEECcCCccCcCCHH-HhhCCCcCCEEECCCC-cCCcchhhh--------hcCCCCEEECcCCccccccCCCCcC
Confidence 56889999886566666655 5668889999998885 555443311 34455555554431 111
Q ss_pred cccccCCc----cCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccc
Q 044237 84 QLCKQDSK----LGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECR 159 (212)
Q Consensus 84 ~l~~~~~~----~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 159 (212)
.+...... ....+++|++|+++++. ++.+.+.....+++|++|+++++. +..+.+......+++|++|+++++.
T Consensus 103 ~L~l~~n~l~~~~~~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 103 TLHAANNNISRVSCSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp EEECCSSCCSEEEECCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EEECCCCccCCcCccccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc
Confidence 11100000 00234556666665542 222222223445566666666553 3333222233345556666655543
Q ss_pred cccccccccc-----------c---ccccccccCCccceeecCCCCCCceecCCCccccCCCCccC
Q 044237 160 AMTEVVINDK-----------E---GVEKEEIVFRKLKMLELRDLDSLTSFCSANYTFKFPSLQDL 211 (212)
Q Consensus 160 ~l~~i~~~~~-----------~---~~~~~~~~~p~L~~L~l~~cp~L~~~~~~~~~~~~p~L~~l 211 (212)
+..+..... . +.......+++|++|++.++ .++.++... ..+++|++|
T Consensus 181 -l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~--~~l~~L~~L 242 (317)
T 3o53_A 181 -IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKAL--RFSQNLEHF 242 (317)
T ss_dssp -CCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTC--CCCTTCCEE
T ss_pred -CcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCC-cccchhhHh--hcCCCCCEE
Confidence 122111000 0 00011235678888888776 566665532 235666654
No 16
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.22 E-value=1.4e-10 Score=92.38 Aligned_cols=110 Identities=24% Similarity=0.160 Sum_probs=52.7
Q ss_pred ccccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhc
Q 044237 67 KLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKT 146 (212)
Q Consensus 67 ~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~ 146 (212)
.+++|++|+++++. ++.+. ......+++|++|++++| .++.+.+.....+++|+.|++++|. ++.+.+ .....
T Consensus 107 ~l~~L~~L~L~~n~-l~~~~---~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~ 179 (272)
T 3rfs_A 107 KLTNLKELVLVENQ-LQSLP---DGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPE-GVFDK 179 (272)
T ss_dssp TCTTCCEEECTTSC-CCCCC---TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTT
T ss_pred CCcCCCEEECCCCc-CCccC---HHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC-cCccCH-HHhcC
Confidence 34555555555542 33221 111234556666666665 3444433323455666666666653 333322 22345
Q ss_pred CCCCcEEeeeccccccccccccccccccccccCCccceeecCCCC
Q 044237 147 LVQLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLD 191 (212)
Q Consensus 147 l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp 191 (212)
+++|++|++.++. +..+... ....+++|+.|++.++|
T Consensus 180 l~~L~~L~L~~N~-l~~~~~~-------~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 180 LTQLKDLRLYQNQ-LKSVPDG-------VFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CTTCCEEECCSSC-CSCCCTT-------TTTTCTTCCEEECCSSC
T ss_pred CccCCEEECCCCc-CCccCHH-------HHhCCcCCCEEEccCCC
Confidence 5666666666653 2222210 01245677777776643
No 17
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.22 E-value=1.6e-10 Score=95.23 Aligned_cols=174 Identities=13% Similarity=0.057 Sum_probs=94.3
Q ss_pred CCCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCccccccc
Q 044237 5 ADFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQ 84 (212)
Q Consensus 5 ~~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~ 84 (212)
+.+|.+..+++++|+++.+.++.+|.. .++.+++|++|+++++.-.+.+.... ...+++++++.+.++.+++.
T Consensus 22 t~iP~~l~~~l~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~N~i~~~i~~~~------f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 22 TEIPSDLPRNAIELRFVLTKLRVIQKG-AFSGFGDLEKIEISQNDVLEVIEADV------FSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp CSCCTTCCTTCSEEEEESCCCSEECTT-SSTTCTTCCEEEEECCTTCCEECTTS------BCSCTTCCEEEEEEETTCCE
T ss_pred CccCcCcCCCCCEEEccCCcCCCcCHH-HHcCCCCCCEEECcCCCCCCccChhH------hhcchhhhhhhcccCCcccc
Confidence 356777778999999998888899876 56799999999999975445443210 11234444444444444444
Q ss_pred ccccCCccCCCcCcccEEEEe------------------------cCccccccCCCCcccC-CCCCeEEEcCCCCCceec
Q 044237 85 LCKQDSKLGPIFQYLEILKVY------------------------DCQSLLILLPSSSVSF-RNLTEIVAFGCKELIHLV 139 (212)
Q Consensus 85 l~~~~~~~~~~l~~L~~L~i~------------------------~C~~L~~l~~~~~~~l-~~L~~L~i~~C~~L~~l~ 139 (212)
+..+ ....+++|++|+++ ++.++..+.+.....+ ..++.|+++++ +++.+.
T Consensus 95 l~~~---~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~ 170 (350)
T 4ay9_X 95 INPE---AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIH 170 (350)
T ss_dssp ECTT---SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEEC
T ss_pred cCch---hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCC
Confidence 3211 11234444555444 4444443322211111 23444444443 233332
Q ss_pred chhhHhcCCCCcEEeeeccccccccccccccccccccccCCccceeecCCCCCCceecCC
Q 044237 140 TSSTAKTLVQLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLDSLTSFCSA 199 (212)
Q Consensus 140 ~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~L~~~~~~ 199 (212)
. .+....+|+++.+.++..++.+.... ...+++|+.|++++. .+++++.+
T Consensus 171 ~--~~f~~~~L~~l~l~~~n~l~~i~~~~-------f~~l~~L~~LdLs~N-~l~~lp~~ 220 (350)
T 4ay9_X 171 N--SAFNGTQLDELNLSDNNNLEELPNDV-------FHGASGPVILDISRT-RIHSLPSY 220 (350)
T ss_dssp T--TSSTTEEEEEEECTTCTTCCCCCTTT-------TTTEECCSEEECTTS-CCCCCCSS
T ss_pred h--hhccccchhHHhhccCCcccCCCHHH-------hccCcccchhhcCCC-CcCccChh
Confidence 2 12233455555555555555443211 124678888888876 57777654
No 18
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.21 E-value=5.8e-11 Score=97.84 Aligned_cols=185 Identities=18% Similarity=0.151 Sum_probs=87.0
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
.+++|++|+++++.+..++.. .++.+++|++|+++++ .++.++.. ....+++|++|++++. +++.+...
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~------~~~~l~~L~~L~L~~n-~l~~l~~~-- 142 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEED-SFSSLGSLEHLDLSYN-YLSNLSSS------WFKPLSSLTFLNLLGN-PYKTLGET-- 142 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSS-CCSSCCHH------HHTTCTTCSEEECTTC-CCSSSCSS--
T ss_pred cCCCCCEEECCCCccCccCHh-hcCCCCCCCEEECCCC-cCCcCCHh------HhCCCccCCEEECCCC-CCcccCch--
Confidence 467777777774455555443 3457777777777764 44443321 0113455555555543 22322110
Q ss_pred ccCCCcCcccEEEEecCccccccC------------------------CCCcccCCCCCeEEEcCCCCCceecchhhHhc
Q 044237 91 KLGPIFQYLEILKVYDCQSLLILL------------------------PSSSVSFRNLTEIVAFGCKELIHLVTSSTAKT 146 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l~------------------------~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~ 146 (212)
.....+++|++|+++++..+..+. +.....+++|++|+++++. +..+ +......
T Consensus 143 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~-~~~~~~~ 220 (353)
T 2z80_A 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILL-LEIFVDV 220 (353)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTH-HHHHHHH
T ss_pred hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccc-hhhhhhh
Confidence 011234444444444443333332 3223444555555555443 2222 1122334
Q ss_pred CCCCcEEeeecccccccccccccc----------------cc--------ccccccCCccceeecCCCCCCceecCCCcc
Q 044237 147 LVQLVTVRMRECRAMTEVVINDKE----------------GV--------EKEEIVFRKLKMLELRDLDSLTSFCSANYT 202 (212)
Q Consensus 147 l~~L~~L~i~~c~~l~~i~~~~~~----------------~~--------~~~~~~~p~L~~L~l~~cp~L~~~~~~~~~ 202 (212)
+++|++|++.++.- ..+....-. .. ......+++|++|++.++ .++.++.+. -
T Consensus 221 ~~~L~~L~L~~n~l-~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~-~ 297 (353)
T 2z80_A 221 TSSVECLELRDTDL-DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGI-F 297 (353)
T ss_dssp TTTEEEEEEESCBC-TTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTT-T
T ss_pred cccccEEECCCCcc-ccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHH-H
Confidence 66677777766532 111100000 00 001124678888888877 456666542 1
Q ss_pred ccCCCCccC
Q 044237 203 FKFPSLQDL 211 (212)
Q Consensus 203 ~~~p~L~~l 211 (212)
..+++|++|
T Consensus 298 ~~l~~L~~L 306 (353)
T 2z80_A 298 DRLTSLQKI 306 (353)
T ss_dssp TTCTTCCEE
T ss_pred hcCCCCCEE
Confidence 245677665
No 19
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.21 E-value=1.7e-10 Score=91.88 Aligned_cols=172 Identities=18% Similarity=0.108 Sum_probs=116.2
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
.+++|++|++.++.+..++. ++.+++|++|+++++ .++.+.. ...+++|++|.++++ +++.+..
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~---l~~l~~L~~L~l~~n-~l~~~~~--------l~~l~~L~~L~L~~n-~l~~~~~--- 102 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQG---IQYLPNVRYLALGGN-KLHDISA--------LKELTNLTYLILTGN-QLQSLPN--- 102 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTT---GGGCTTCCEEECTTS-CCCCCGG--------GTTCTTCCEEECTTS-CCCCCCT---
T ss_pred cccceeeeeeCCCCcccccc---cccCCCCcEEECCCC-CCCCchh--------hcCCCCCCEEECCCC-ccCccCh---
Confidence 58899999999655666653 358999999999986 4554321 236889999999987 4555422
Q ss_pred ccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecccccccccccccc
Q 044237 91 KLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDKE 170 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 170 (212)
.....+++|++|+++++. ++.+.+.....+++|++|++++| +++.+.+ .....+++|++|++.++. +..+....
T Consensus 103 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~-- 176 (272)
T 3rfs_A 103 GVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPK-GVFDKLTNLTELDLSYNQ-LQSLPEGV-- 176 (272)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTT--
T ss_pred hHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCH-HHhccCccCCEEECCCCC-cCccCHHH--
Confidence 223568899999999974 55555543567899999999988 4665533 345678999999999984 44432211
Q ss_pred ccccccccCCccceeecCCCCCCceecCCCccccCCCCccC
Q 044237 171 GVEKEEIVFRKLKMLELRDLDSLTSFCSANYTFKFPSLQDL 211 (212)
Q Consensus 171 ~~~~~~~~~p~L~~L~l~~cp~L~~~~~~~~~~~~p~L~~l 211 (212)
...+++|++|.+.++. ++.+..+. -..+++|++|
T Consensus 177 -----~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L 210 (272)
T 3rfs_A 177 -----FDKLTQLKDLRLYQNQ-LKSVPDGV-FDRLTSLQYI 210 (272)
T ss_dssp -----TTTCTTCCEEECCSSC-CSCCCTTT-TTTCTTCCEE
T ss_pred -----hcCCccCCEEECCCCc-CCccCHHH-HhCCcCCCEE
Confidence 1257899999988763 45444431 1234555544
No 20
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.21 E-value=1.5e-10 Score=91.94 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=112.4
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
.+++|++|+++.+.+..+|.. .++.+++|++|+++++ .++.+... ....+++|++|.+++. +++.+. .
T Consensus 59 ~l~~L~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n-~l~~~~~~------~~~~l~~L~~L~l~~n-~l~~~~---~ 126 (270)
T 2o6q_A 59 RLTKLRLLYLNDNKLQTLPAG-IFKELKNLETLWVTDN-KLQALPIG------VFDQLVNLAELRLDRN-QLKSLP---P 126 (270)
T ss_dssp SCTTCCEEECCSSCCSCCCTT-TTSSCTTCCEEECCSS-CCCCCCTT------TTTTCSSCCEEECCSS-CCCCCC---T
T ss_pred CCCCCCEEECCCCccCeeChh-hhcCCCCCCEEECCCC-cCCcCCHh------HcccccCCCEEECCCC-ccCeeC---H
Confidence 478999999996677778776 5568999999999985 56554431 1235789999999985 355442 2
Q ss_pred ccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecccccccccccccc
Q 044237 91 KLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDKE 170 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 170 (212)
.....+++|++|+++++ .++.+.+.....+++|++|+++++. ++.+.. .....+++|++|++.++ .+..+...
T Consensus 127 ~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~--- 199 (270)
T 2o6q_A 127 RVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPE-GAFDKLTELKTLKLDNN-QLKRVPEG--- 199 (270)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSS-CCSCCCTT---
T ss_pred HHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCc-CcEeCh-hHhccCCCcCEEECCCC-cCCcCCHH---
Confidence 22356899999999997 4555544435678999999999874 555432 34567899999999997 44444321
Q ss_pred ccccccccCCccceeecCCCC
Q 044237 171 GVEKEEIVFRKLKMLELRDLD 191 (212)
Q Consensus 171 ~~~~~~~~~p~L~~L~l~~cp 191 (212)
....+++|+.|.+.+.|
T Consensus 200 ----~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 200 ----AFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ----TTTTCTTCCEEECCSSC
T ss_pred ----HhccccCCCEEEecCCC
Confidence 12257899999998765
No 21
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.20 E-value=7e-12 Score=102.34 Aligned_cols=162 Identities=15% Similarity=0.077 Sum_probs=96.4
Q ss_pred ccCCccEEEEcCCCCc-eechHHHHhhcCCCcEEEEeecCCccee-ccccccccccccccccccEEecCccccccccccc
Q 044237 11 LFGSLKQLNIGGDDSA-CFPIWNVLERFHSLEILILCYFSFHEEV-FSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQ 88 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~-~~p~~~~~~~l~~L~~L~i~~C~~l~~i-~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~ 88 (212)
.+++|++|+++++... ..|. .++.+++|++|++++|..++.. ++. ....+++|++|++++|++++....
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~--~l~~~~~L~~L~L~~~~~l~~~~l~~------~~~~~~~L~~L~l~~~~~l~~~~~- 186 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVN--TLAKNSNLVRLNLSGCSGFSEFALQT------LLSSCSRLDELNLSWCFDFTEKHV- 186 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHH--HHTTCTTCSEEECTTCBSCCHHHHHH------HHHHCTTCCEEECCCCTTCCHHHH-
T ss_pred hCCCCCEEeCcCcccCHHHHH--HHhcCCCCCEEECCCCCCCCHHHHHH------HHhcCCCCCEEcCCCCCCcChHHH-
Confidence 4789999999843333 3333 3457899999999988655521 110 112577888888888866654210
Q ss_pred CCccCCCcC-cccEEEEecCc-cccc-cCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccc
Q 044237 89 DSKLGPIFQ-YLEILKVYDCQ-SLLI-LLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVV 165 (212)
Q Consensus 89 ~~~~~~~l~-~L~~L~i~~C~-~L~~-l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~ 165 (212)
......++ +|++|++++|. .+.+ ..+.....+++|++|++++|..+...... ....+++|++|++.+|..+....
T Consensus 187 -~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 187 -QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp -HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGG
T ss_pred -HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHH
Confidence 11123566 78888888875 3431 11222446778888888888755433222 34566888888888886332110
Q ss_pred cccccccccccccCCccceeecCCC
Q 044237 166 INDKEGVEKEEIVFRKLKMLELRDL 190 (212)
Q Consensus 166 ~~~~~~~~~~~~~~p~L~~L~l~~c 190 (212)
. .....+++|++|++.+|
T Consensus 265 ~-------~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 265 L-------LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp G-------GGGGGCTTCCEEECTTS
T ss_pred H-------HHHhcCCCCCEEeccCc
Confidence 0 01124677777777766
No 22
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.20 E-value=2e-10 Score=90.28 Aligned_cols=163 Identities=16% Similarity=0.104 Sum_probs=111.6
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+|.+..++|++|+++.+.+..++.. .++.+++|++|+++++ .++.+.+. ....+++|++|++++. +++.+
T Consensus 28 ~~p~~~~~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~------~~~~l~~L~~L~L~~n-~l~~~ 98 (251)
T 3m19_A 28 SVPSGIPADTEKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYN-QLQTLSAG------VFDDLTELGTLGLANN-QLASL 98 (251)
T ss_dssp SCCSCCCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTS-CCCCCCTT------TTTTCTTCCEEECTTS-CCCCC
T ss_pred ccCCCCCCCCCEEEccCCCcCccCHh-HhcCcccCCEEECCCC-cCCccCHh------HhccCCcCCEEECCCC-ccccc
Confidence 45666678899999996666666654 4568999999999885 66554431 1235789999999885 35544
Q ss_pred cccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccc
Q 044237 86 CKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVV 165 (212)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~ 165 (212)
.. .....+++|++|+++++ .++.+.+.....+++|+.|+++++ +++.+.. .....+++|++|++.++. +..+.
T Consensus 99 ~~---~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~ 171 (251)
T 3m19_A 99 PL---GVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPA-GAFDKLTNLQTLSLSTNQ-LQSVP 171 (251)
T ss_dssp CT---TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCC
T ss_pred Ch---hHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCH-HHcCcCcCCCEEECCCCc-CCccC
Confidence 22 22346789999999987 566655543466889999999887 4665533 345678899999998874 33332
Q ss_pred cccccccccccccCCccceeecCCCC
Q 044237 166 INDKEGVEKEEIVFRKLKMLELRDLD 191 (212)
Q Consensus 166 ~~~~~~~~~~~~~~p~L~~L~l~~cp 191 (212)
.. ....+++|+.|.+.+.+
T Consensus 172 ~~-------~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 172 HG-------AFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TT-------TTTTCTTCCEEECCSCC
T ss_pred HH-------HHhCCCCCCEEEeeCCc
Confidence 21 12257888888888765
No 23
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.19 E-value=9.9e-11 Score=94.44 Aligned_cols=187 Identities=13% Similarity=0.101 Sum_probs=93.1
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+|.+..++|++|+++++.+..+|.. .++.+++|++|+++++ .++.+.... .....+++|++|+++++. +..+
T Consensus 21 ~ip~~~~~~l~~L~L~~n~l~~i~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~----~~~~~~~~L~~L~Ls~n~-i~~l 93 (306)
T 2z66_A 21 SVPTGIPSSATRLELESNKLQSLPHG-VFDKLTQLTKLSLSSN-GLSFKGCCS----QSDFGTTSLKYLDLSFNG-VITM 93 (306)
T ss_dssp SCCSCCCTTCCEEECCSSCCCCCCTT-TTTTCTTCSEEECCSS-CCCEEEEEE----HHHHSCSCCCEEECCSCS-EEEE
T ss_pred cCCCCCCCCCCEEECCCCccCccCHh-HhhccccCCEEECCCC-ccCcccCcc----cccccccccCEEECCCCc-cccC
Confidence 45666678899999986666777766 5568889999999875 444321000 001124455555554431 2221
Q ss_pred ccc--------------------CC-ccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhH
Q 044237 86 CKQ--------------------DS-KLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTA 144 (212)
Q Consensus 86 ~~~--------------------~~-~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~ 144 (212)
... .. .....+++|++|+++++.- ....+.....+++|++|+++++.--.... +...
T Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~ 171 (306)
T 2z66_A 94 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFL-PDIF 171 (306)
T ss_dssp EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC-EECSTTTTTTCTTCCEEECTTCEEGGGEE-CSCC
T ss_pred hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC-CccchhhcccCcCCCEEECCCCccccccc-hhHH
Confidence 100 00 1123455566666655532 22223324445666666666553111011 1233
Q ss_pred hcCCCCcEEeeeccccccccccccccccccccccCCccceeecCCCCCCceecCCCccccCCCCccC
Q 044237 145 KTLVQLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLDSLTSFCSANYTFKFPSLQDL 211 (212)
Q Consensus 145 ~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~L~~~~~~~~~~~~p~L~~l 211 (212)
..+++|++|+++++. +..+... ....+++|++|.+.++. ++.+.... -..+++|++|
T Consensus 172 ~~l~~L~~L~Ls~n~-l~~~~~~-------~~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L 228 (306)
T 2z66_A 172 TELRNLTFLDLSQCQ-LEQLSPT-------AFNSLSSLQVLNMSHNN-FFSLDTFP-YKCLNSLQVL 228 (306)
T ss_dssp TTCTTCCEEECTTSC-CCEECTT-------TTTTCTTCCEEECTTSC-CSBCCSGG-GTTCTTCCEE
T ss_pred hhCcCCCEEECCCCC-cCCcCHH-------HhcCCCCCCEEECCCCc-cCccChhh-ccCcccCCEe
Confidence 455666666666653 2222110 11246788888887764 34333311 1224566554
No 24
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.19 E-value=3.9e-10 Score=89.65 Aligned_cols=139 Identities=15% Similarity=0.089 Sum_probs=83.9
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+|....++|++|+++++.+..++.. .+..+++|++|++++| .++.+.+. ....+++|++|++++.. ++.+
T Consensus 21 ~ip~~l~~~l~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~------~~~~l~~L~~L~L~~n~-l~~~ 91 (276)
T 2z62_A 21 KIPDNLPFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRC-EIQTIEDG------AYQSLSHLSTLILTGNP-IQSL 91 (276)
T ss_dssp SCCSSSCTTCCEEECTTCCCCEECTT-TTTTCTTCSEEECTTC-CCCEECTT------TTTTCTTCCEEECTTCC-CCEE
T ss_pred ccCCCCCCCccEEECCCCcccccCHh-HhccccCCcEEECCCC-cCCccCHH------HccCCcCCCEEECCCCc-cCcc
Confidence 45665667899999996667777764 4568999999999986 66665431 12256778888887653 3333
Q ss_pred cccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecc
Q 044237 86 CKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMREC 158 (212)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c 158 (212)
.. .....+++|++|+++++. +..+.+.....+++|++|+++++. ++.+..+.....+++|++|+++++
T Consensus 92 ~~---~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 92 AL---GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp CT---TTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS
T ss_pred Ch---hhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC
Confidence 21 122456677777776653 233333224556677777776653 322211223455666777776665
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.19 E-value=5.1e-10 Score=95.67 Aligned_cols=173 Identities=17% Similarity=0.178 Sum_probs=88.6
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+|.+..+++++|+++.+.+..++.. .+..+++|++|+++++ .++.+.+.. ...+++|++|++++. +++.+
T Consensus 25 ~ip~~~~~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n-~i~~~~~~~------~~~l~~L~~L~L~~n-~l~~~ 95 (477)
T 2id5_A 25 AVPEGIPTETRLLDLGKNRIKTLNQD-EFASFPHLEELELNEN-IVSAVEPGA------FNNLFNLRTLGLRSN-RLKLI 95 (477)
T ss_dssp SCCSCCCTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECTTS-CCCEECTTT------TTTCTTCCEEECCSS-CCCSC
T ss_pred cCCCCCCCCCcEEECCCCccceECHh-HccCCCCCCEEECCCC-ccCEeChhh------hhCCccCCEEECCCC-cCCcc
Confidence 45666667888888886666666554 4568888888888875 555543211 113455555555443 12222
Q ss_pred ccc---------------------CCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhH
Q 044237 86 CKQ---------------------DSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTA 144 (212)
Q Consensus 86 ~~~---------------------~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~ 144 (212)
... .+.....+++|++|+++++. +..+.+.....+++|+.|++++|. ++.+. ....
T Consensus 96 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~l 172 (477)
T 2id5_A 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCN-LTSIP-TEAL 172 (477)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCC-CSSCC-HHHH
T ss_pred CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCc-CcccC-hhHh
Confidence 110 01112334555555555542 222223334455566666666552 33332 2234
Q ss_pred hcCCCCcEEeeeccccccccccccccccccccccCCccceeecCCCCCCceecC
Q 044237 145 KTLVQLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLDSLTSFCS 198 (212)
Q Consensus 145 ~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~L~~~~~ 198 (212)
..+++|+.|++.++.- ..+.. .....+++|+.|++.+++.+..+..
T Consensus 173 ~~l~~L~~L~l~~n~i-~~~~~-------~~~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNI-NAIRD-------YSFKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp TTCTTCCEEEEESCCC-CEECT-------TCSCSCTTCCEEEEECCTTCCEECT
T ss_pred cccCCCcEEeCCCCcC-cEeCh-------hhcccCcccceeeCCCCccccccCc
Confidence 4556666666665432 22111 0112456777777777666555544
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.17 E-value=1.4e-10 Score=101.93 Aligned_cols=183 Identities=16% Similarity=-0.015 Sum_probs=101.7
Q ss_pred ccccCCccEEEEcCCCCcee---chHHHHhhcCCCcEEEEeecCCcceeccccc-c-----------c-----c-ccccc
Q 044237 9 QHLFGSLKQLNIGGDDSACF---PIWNVLERFHSLEILILCYFSFHEEVFSMEG-C-----------L-----E-KHVGK 67 (212)
Q Consensus 9 ~~~l~~Lk~L~l~~~~~~~~---p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~-~-----------~-----~-~~~~~ 67 (212)
...+++|++|+++++.+... |. ....+++|++|++++| .+..++...+ . . . .....
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~--~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSY--SDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCH--HHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred hccCCCCCEEECcCCccCCCcchhh--hhccCCcccEeECCCC-ccccchhhccCCCCCCeeECCCCccCCccChhhhhc
Confidence 34688999999995555544 44 3568899999999886 4555432111 0 0 0 01123
Q ss_pred cccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcC
Q 044237 68 LAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTL 147 (212)
Q Consensus 68 l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l 147 (212)
+++|++|+++++. +... .+.....+++|++|++++|.--....|.....+++|++|++++|. ++...+ .....+
T Consensus 423 l~~L~~L~l~~n~-l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l 496 (606)
T 3vq2_A 423 LEKLLYLDISYTN-TKID---FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISW-GVFDTL 496 (606)
T ss_dssp CTTCCEEECTTSC-CEEC---CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT-TTTTTC
T ss_pred cccCCEEECcCCC-CCcc---chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-CCccCh-hhhccc
Confidence 4555555555543 2211 111224566777777777643332334445667777777777773 444432 234567
Q ss_pred CCCcEEeeeccccccccccccccccccccccCCccceeecCCCCCCceecCCCccccCC-CCccC
Q 044237 148 VQLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLDSLTSFCSANYTFKFP-SLQDL 211 (212)
Q Consensus 148 ~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~L~~~~~~~~~~~~p-~L~~l 211 (212)
++|++|+++++.- ..+... ....+++|++|++.++. +++++.+ -..+| +|+++
T Consensus 497 ~~L~~L~Ls~N~l-~~~~~~-------~~~~l~~L~~L~l~~N~-l~~~p~~--~~~l~~~L~~l 550 (606)
T 3vq2_A 497 HRLQLLNMSHNNL-LFLDSS-------HYNQLYSLSTLDCSFNR-IETSKGI--LQHFPKSLAFF 550 (606)
T ss_dssp TTCCEEECCSSCC-SCEEGG-------GTTTCTTCCEEECTTSC-CCCEESC--GGGSCTTCCEE
T ss_pred ccCCEEECCCCcC-CCcCHH-------HccCCCcCCEEECCCCc-CcccCHh--HhhhcccCcEE
Confidence 7777777777743 322211 11246777788777774 5666654 23344 35543
No 27
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.16 E-value=2.5e-10 Score=98.37 Aligned_cols=135 Identities=13% Similarity=0.082 Sum_probs=70.2
Q ss_pred cCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCccccccccc-----
Q 044237 12 FGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLC----- 86 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~----- 86 (212)
+++|++|+++++.+..++.. .++.+++|++|++++| .+..+++. ..+++|++|+++++ .++.+.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~l--------~~l~~L~~L~Ls~N-~l~~l~~~~~L 101 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSN-VLYETLDL--------ESLSTLRTLDLNNN-YVQELLVGPSI 101 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGG-GGTTCTTCCEEECTTS-CCEEEEEC--------TTCTTCCEEECCSS-EEEEEEECTTC
T ss_pred CCCccEEEeeCCcCCCCCHH-HHhCCCCCCEEEeeCC-CCCCCccc--------ccCCCCCEEEecCC-cCCCCCCCCCc
Confidence 45788888885555556544 4568888888888875 45544431 13455555555543 122111
Q ss_pred ----ccCCc----cCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecc
Q 044237 87 ----KQDSK----LGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMREC 158 (212)
Q Consensus 87 ----~~~~~----~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c 158 (212)
..... ....+++|+.|+++++. +..+.|.....+++|++|+++++. +....+......+++|++|+++++
T Consensus 102 ~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 102 ETLHAANNNISRVSCSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp CEEECCSSCCCCEEECCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CEEECcCCcCCCCCccccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCC
Confidence 10000 00234566666666553 233333224455666666666553 333333223335566666666655
Q ss_pred c
Q 044237 159 R 159 (212)
Q Consensus 159 ~ 159 (212)
.
T Consensus 180 ~ 180 (487)
T 3oja_A 180 F 180 (487)
T ss_dssp C
T ss_pred c
Confidence 3
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.15 E-value=1.7e-10 Score=95.03 Aligned_cols=140 Identities=15% Similarity=0.121 Sum_probs=104.0
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+|.+..++|++|+++++.+..+|.. .++.+++|++|+++++ .++.+.+. ....+++|++|++++. +++.+
T Consensus 45 ~iP~~~~~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~------~~~~l~~L~~L~Ls~n-~l~~~ 115 (353)
T 2z80_A 45 SIPSGLTEAVKSLDLSNNRITYISNS-DLQRCVNLQALVLTSN-GINTIEED------SFSSLGSLEHLDLSYN-YLSNL 115 (353)
T ss_dssp SCCTTCCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTS-CCCEECTT------TTTTCTTCCEEECCSS-CCSSC
T ss_pred cccccccccCcEEECCCCcCcccCHH-HhccCCCCCEEECCCC-ccCccCHh------hcCCCCCCCEEECCCC-cCCcC
Confidence 56777788999999997677777765 4579999999999986 67665432 1235799999999986 45554
Q ss_pred cccCCccCCCcCcccEEEEecCccccccCC-CCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccc
Q 044237 86 CKQDSKLGPIFQYLEILKVYDCQSLLILLP-SSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECR 159 (212)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~-~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 159 (212)
.. .....+++|++|+++++ .++.+.+ .....+++|++|++++|..+..+.+ .....+++|++|++.++.
T Consensus 116 ~~---~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 116 SS---SWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASD 185 (353)
T ss_dssp CH---HHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETT
T ss_pred CH---hHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCH-HHccCCCCCCEEECCCCC
Confidence 22 11246889999999987 3445433 2366789999999999987777643 345678899999999875
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.15 E-value=3.8e-10 Score=92.42 Aligned_cols=174 Identities=12% Similarity=0.087 Sum_probs=106.5
Q ss_pred cccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccc--------------cccccccccccEEe
Q 044237 10 HLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCL--------------EKHVGKLAMIKELQ 75 (212)
Q Consensus 10 ~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~--------------~~~~~~l~~L~~L~ 75 (212)
..+++|++|++.++....++. ++.+++|++|++++| .++.+....... ......+++|++|+
T Consensus 152 ~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ 227 (347)
T 4fmz_A 152 SNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYN-QIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLK 227 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTTS-CCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEE
T ss_pred hhCCCCcEEEecCCCcCCchh---hccCCCCCEEEccCC-cccccccccCCCccceeecccCCCCCCchhhcCCcCCEEE
Confidence 357788888888444444443 247888888888876 444333211100 00122456677777
Q ss_pred cCcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEee
Q 044237 76 LHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRM 155 (212)
Q Consensus 76 l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i 155 (212)
++++. ++.+.. ...+++|++|++++| .+..+ +. ...+++|++|++++| +++.+ .....+++|++|++
T Consensus 228 l~~n~-l~~~~~-----~~~l~~L~~L~l~~n-~l~~~-~~-~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 228 IGNNK-ITDLSP-----LANLSQLTWLEIGTN-QISDI-NA-VKDLTKLKMLNVGSN-QISDI---SVLNNLSQLNSLFL 294 (347)
T ss_dssp CCSSC-CCCCGG-----GTTCTTCCEEECCSS-CCCCC-GG-GTTCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEEC
T ss_pred ccCCc-cCCCcc-----hhcCCCCCEEECCCC-ccCCC-hh-HhcCCCcCEEEccCC-ccCCC---hhhcCCCCCCEEEC
Confidence 76652 333211 246788888888887 34443 32 567788888888887 35444 23567888999999
Q ss_pred eccccccccccccccccccccccCCccceeecCCCCCCceecCCCccccCCCCccCC
Q 044237 156 RECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLDSLTSFCSANYTFKFPSLQDLW 212 (212)
Q Consensus 156 ~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~L~~~~~~~~~~~~p~L~~l~ 212 (212)
.+|.-- ..... ....+++|++|++.+++ ++.+.. -..+|+|++|+
T Consensus 295 ~~n~l~-~~~~~-------~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~ 339 (347)
T 4fmz_A 295 NNNQLG-NEDME-------VIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSAD 339 (347)
T ss_dssp CSSCCC-GGGHH-------HHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEES
T ss_pred cCCcCC-CcChh-------HhhccccCCEEEccCCc-cccccC---hhhhhccceee
Confidence 888532 22110 12257899999999987 565544 24578887764
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.14 E-value=4.4e-10 Score=97.77 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=25.7
Q ss_pred CcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCc-eecchhhHhcCCCCcEEeeecc
Q 044237 95 IFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELI-HLVTSSTAKTLVQLVTVRMREC 158 (212)
Q Consensus 95 ~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~-~l~~~~~~~~l~~L~~L~i~~c 158 (212)
.+++|++|++++|.-.. ..+.....+++|++|++++|.-.. .+ +.....+++|++|++.+|
T Consensus 419 ~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~--p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFL--PDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp TCTTCCEEECTTSCCEE-CCTTTTTTCTTCCEEECTTCEEGGGEE--CSCCTTCTTCCEEECTTS
T ss_pred cCCCCCEEeCcCCcccc-cchhhhhcCCcCcEEECcCCcCccccc--hhhhhcccCCCEEECCCC
Confidence 34555555555553222 222223344555555555543110 11 112334455555555554
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.13 E-value=3.7e-10 Score=96.53 Aligned_cols=133 Identities=19% Similarity=0.171 Sum_probs=64.3
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
.+++|++|++..+.+..++.. .++.+++|++|++++| .++.++.. ....+++|+.|.+.++. +..+..
T Consensus 126 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~------~l~~l~~L~~L~l~~n~-i~~~~~--- 193 (477)
T 2id5_A 126 DLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLEKC-NLTSIPTE------ALSHLHGLIVLRLRHLN-INAIRD--- 193 (477)
T ss_dssp TCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEESC-CCSSCCHH------HHTTCTTCCEEEEESCC-CCEECT---
T ss_pred ccccCCEEECCCCccceeChh-hccCCCCCCEEECCCC-cCcccChh------HhcccCCCcEEeCCCCc-CcEeCh---
Confidence 467888888885555555443 3457788888888775 44443221 01235556666555532 222211
Q ss_pred ccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecc
Q 044237 91 KLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMREC 158 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c 158 (212)
.....+++|+.|++++|..+..+.+. .....+|++|++++|. ++.+. ......+++|++|+++++
T Consensus 194 ~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 194 YSFKRLYRLKVLEISHWPYLDTMTPN-CLYGLNLTSLSITHCN-LTAVP-YLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp TCSCSCTTCCEEEEECCTTCCEECTT-TTTTCCCSEEEEESSC-CCSCC-HHHHTTCTTCCEEECCSS
T ss_pred hhcccCcccceeeCCCCccccccCcc-cccCccccEEECcCCc-ccccC-HHHhcCccccCeeECCCC
Confidence 11234455555555555544443322 2233345555554442 22221 122334444444444443
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.13 E-value=6.3e-10 Score=97.99 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=26.8
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceec
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVF 55 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~ 55 (212)
.+.+++.+++.++....+|.. .++.+++|++|++++| .++.+.
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~-~~~~l~~L~~L~L~~n-~l~~~~ 91 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAA-LLDSFRQVELLNLNDL-QIEEID 91 (597)
T ss_dssp GGCCCSEEEESSCEESEECTH-HHHHCCCCSEEECTTS-CCCEEC
T ss_pred cCCCceEEEeeCCCCCCcCHH-HHccCCCCcEEECCCC-CCCCCC
Confidence 356677777775556666665 5566777777777664 454443
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.13 E-value=3.3e-10 Score=91.33 Aligned_cols=164 Identities=17% Similarity=0.045 Sum_probs=99.8
Q ss_pred ccCCccEEEEcCCCCcee---chHHHHhhcCCCcEEEEeecCCcceeccccc-c----------------cc-ccccccc
Q 044237 11 LFGSLKQLNIGGDDSACF---PIWNVLERFHSLEILILCYFSFHEEVFSMEG-C----------------LE-KHVGKLA 69 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~---p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~-~----------------~~-~~~~~l~ 69 (212)
.+++|++|+++++.+... |.. ...+++|++|+++++ .++.++.... . .. .....++
T Consensus 50 ~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 126 (306)
T 2z66_A 50 KLTQLTKLSLSSNGLSFKGCCSQS--DFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126 (306)
T ss_dssp TCTTCSEEECCSSCCCEEEEEEHH--HHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT
T ss_pred ccccCCEEECCCCccCcccCcccc--cccccccCEEECCCC-ccccChhhcCCCCCCCEEECCCCcccccccchhhhhcc
Confidence 478899999995555443 443 347899999999886 4554433111 0 00 0122456
Q ss_pred cccEEecCcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCC
Q 044237 70 MIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQ 149 (212)
Q Consensus 70 ~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~ 149 (212)
+|++|.++++. +..+ .......+++|++|+++++.--....|.....+++|++|++++|. ++.+.+ .....+++
T Consensus 127 ~L~~L~l~~n~-l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~ 200 (306)
T 2z66_A 127 NLIYLDISHTH-TRVA---FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP-TAFNSLSS 200 (306)
T ss_dssp TCCEEECTTSC-CEEC---STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT-TTTTTCTT
T ss_pred CCCEEECCCCc-CCcc---chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCH-HHhcCCCC
Confidence 67777776653 2222 112234678899999998854432345546778899999998874 555532 34567788
Q ss_pred CcEEeeeccccccccccccccccccccccCCccceeecCCCC
Q 044237 150 LVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLD 191 (212)
Q Consensus 150 L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp 191 (212)
|++|++.++.- ..+... ....+++|+.|++.+++
T Consensus 201 L~~L~L~~N~l-~~~~~~-------~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 201 LQVLNMSHNNF-FSLDTF-------PYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp CCEEECTTSCC-SBCCSG-------GGTTCTTCCEEECTTSC
T ss_pred CCEEECCCCcc-CccChh-------hccCcccCCEeECCCCC
Confidence 99999988752 222110 11246778888877764
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.12 E-value=1.1e-09 Score=91.30 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=28.5
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCccee
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEV 54 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i 54 (212)
.+++++.|++..+....+|.. .++.+++|++|+++++ .++.+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~-~~~~l~~L~~L~L~~n-~i~~~ 84 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAA-LLDSFRQVELLNLNDL-QIEEI 84 (390)
T ss_dssp GGCCCSEEEEESCEESEECTH-HHHHCCCCSEEECTTS-CCCEE
T ss_pred ccCCceEEEecCCchhhCChh-HhcccccCcEEECCCC-ccccc
Confidence 367777777776666667766 5567777777777765 45444
No 35
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.11 E-value=5.7e-10 Score=90.44 Aligned_cols=167 Identities=14% Similarity=0.131 Sum_probs=79.4
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccC-
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQD- 89 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~- 89 (212)
.+++|++|++.+..+..+|. ++.+++|++|++++| .++.+.+ ...+++|++|+++++. ++.+..-.
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~---~~~l~~L~~L~L~~n-~i~~~~~--------~~~l~~L~~L~L~~n~-l~~~~~~~~ 105 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEG---VQYLNNLIGLELKDN-QITDLAP--------LKNLTKITELELSGNP-LKNVSAIAG 105 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTT---GGGCTTCCEEECCSS-CCCCCGG--------GTTCCSCCEEECCSCC-CSCCGGGTT
T ss_pred HcCCcCEEEeeCCCccCchh---hhccCCCCEEEccCC-cCCCChh--------HccCCCCCEEEccCCc-CCCchhhcC
Confidence 46777787777555555553 247777888877775 4444332 1235556666655542 33221000
Q ss_pred ----------------CccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEE
Q 044237 90 ----------------SKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTV 153 (212)
Q Consensus 90 ----------------~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L 153 (212)
......+++|++|+++++. ++.+.+ ...+++|++|++++| +++.+.. ...+++|+.|
T Consensus 106 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L 178 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNA-QVSDLTP---LANLSKLTTL 178 (308)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEE
T ss_pred CCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCC-cCCCChh---hcCCCCCCEE
Confidence 0001234444444444442 222111 334455555555554 2333211 3445555555
Q ss_pred eeeccccccccccccccccccccccCCccceeecCCCCCCceecCCCccccCCCCccC
Q 044237 154 RMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLDSLTSFCSANYTFKFPSLQDL 211 (212)
Q Consensus 154 ~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~L~~~~~~~~~~~~p~L~~l 211 (212)
++.++. +..+.. ...+++|++|++.++. ++.+.. -..+|+|++|
T Consensus 179 ~l~~n~-l~~~~~---------l~~l~~L~~L~L~~N~-l~~~~~---l~~l~~L~~L 222 (308)
T 1h6u_A 179 KADDNK-ISDISP---------LASLPNLIEVHLKNNQ-ISDVSP---LANTSNLFIV 222 (308)
T ss_dssp ECCSSC-CCCCGG---------GGGCTTCCEEECTTSC-CCBCGG---GTTCTTCCEE
T ss_pred ECCCCc-cCcChh---------hcCCCCCCEEEccCCc-cCcccc---ccCCCCCCEE
Confidence 555542 122211 2256777888777763 333332 1235666654
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.11 E-value=4.7e-10 Score=91.87 Aligned_cols=124 Identities=14% Similarity=0.151 Sum_probs=62.0
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
.+++|++|++.+.....+|. ++.+++|++|++++| .++.+.. ...+++|++|+++++ +++.+.
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~---~~~~~~L~~L~l~~n-~i~~~~~--------~~~l~~L~~L~L~~n-~i~~~~---- 104 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG---IEYLTNLEYLNLNGN-QITDISP--------LSNLVKLTNLYIGTN-KITDIS---- 104 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT---GGGCTTCCEEECCSS-CCCCCGG--------GTTCTTCCEEECCSS-CCCCCG----
T ss_pred hcccccEEEEeCCccccchh---hhhcCCccEEEccCC-ccccchh--------hhcCCcCCEEEccCC-cccCch----
Confidence 47777777777555555553 246777888887775 4544332 124566666666654 333321
Q ss_pred ccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecc
Q 044237 91 KLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMREC 158 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c 158 (212)
....+++|++|++++|. +..+ +. ...+++|++|++++|..+..+. ....+++|++|++.+|
T Consensus 105 -~~~~l~~L~~L~l~~n~-i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~---~~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 105 -ALQNLTNLRELYLNEDN-ISDI-SP-LANLTKMYSLNLGANHNLSDLS---PLSNMTGLNYLTVTES 165 (347)
T ss_dssp -GGTTCTTCSEEECTTSC-CCCC-GG-GTTCTTCCEEECTTCTTCCCCG---GGTTCTTCCEEECCSS
T ss_pred -HHcCCCcCCEEECcCCc-ccCc-hh-hccCCceeEEECCCCCCccccc---chhhCCCCcEEEecCC
Confidence 11344555555555543 2221 11 3344555555555554443321 1334444444444444
No 37
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.10 E-value=1.3e-09 Score=95.72 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=22.5
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeec
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYF 48 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C 48 (212)
.+++|++|+++++.+..+|.+ ++.+++|++|++++|
T Consensus 276 ~l~~L~~L~l~~n~l~~lp~~--l~~l~~L~~L~l~~n 311 (606)
T 3t6q_A 276 CFSGLQELDLTATHLSELPSG--LVGLSTLKKLVLSAN 311 (606)
T ss_dssp TCTTCSEEECTTSCCSCCCSS--CCSCTTCCEEECTTC
T ss_pred cccCCCEEeccCCccCCCChh--hcccccCCEEECccC
Confidence 356677777775455566654 246677777777664
No 38
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.10 E-value=9e-10 Score=89.27 Aligned_cols=154 Identities=16% Similarity=0.182 Sum_probs=98.0
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccc--------------cccccccccccEEec
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCL--------------EKHVGKLAMIKELQL 76 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~--------------~~~~~~l~~L~~L~l 76 (212)
.+++|++|+++++.+..++. +..+++|++|+++++ .++.+.....+. ......+++|++|.+
T Consensus 61 ~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l 136 (308)
T 1h6u_A 61 YLNNLIGLELKDNQITDLAP---LKNLTKITELELSGN-PLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136 (308)
T ss_dssp GCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSC-CCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEEC
T ss_pred ccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCC-cCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEEC
Confidence 47788888888555555543 347778888888775 344432111100 001224556666666
Q ss_pred CcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeee
Q 044237 77 HQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMR 156 (212)
Q Consensus 77 ~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~ 156 (212)
+++ +++.+. ....+++|+.|++++| .++.+.+ ...+++|+.|+++++. ++.+.. ...+++|++|+++
T Consensus 137 ~~n-~l~~~~-----~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~-l~~~~~---l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 137 DLN-QITNIS-----PLAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNK-ISDISP---LASLPNLIEVHLK 203 (308)
T ss_dssp CSS-CCCCCG-----GGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECT
T ss_pred CCC-ccCcCc-----cccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCCc-cCcChh---hcCCCCCCEEEcc
Confidence 654 233321 1346789999999998 4555433 6778999999999884 555432 6788999999999
Q ss_pred ccccccccccccccccccccccCCccceeecCCCC
Q 044237 157 ECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLD 191 (212)
Q Consensus 157 ~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp 191 (212)
++. +..+.. ...+++|+.|.+.+++
T Consensus 204 ~N~-l~~~~~---------l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 204 NNQ-ISDVSP---------LANTSNLFIVTLTNQT 228 (308)
T ss_dssp TSC-CCBCGG---------GTTCTTCCEEEEEEEE
T ss_pred CCc-cCcccc---------ccCCCCCCEEEccCCe
Confidence 985 333321 2358899999998875
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.07 E-value=3.5e-09 Score=86.23 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=26.6
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCccee
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEV 54 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i 54 (212)
.+|....++|++|+++++.+..++.. .++.+++|++|++++| .++.+
T Consensus 45 ~lp~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~ 91 (330)
T 1xku_A 45 KVPKDLPPDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINN-KISKI 91 (330)
T ss_dssp SCCCSCCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSS-CCCCB
T ss_pred ccCccCCCCCeEEECCCCcCCEeChh-hhccCCCCCEEECCCC-cCCee
Confidence 34444456677777764445555543 3456677777777664 44433
No 40
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.07 E-value=1.4e-09 Score=82.31 Aligned_cols=147 Identities=16% Similarity=0.161 Sum_probs=104.3
Q ss_pred hhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccccC
Q 044237 35 ERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILL 114 (212)
Q Consensus 35 ~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~ 114 (212)
..+++|++|+++++ .++.+.. ...+++|++|.++++ .++.+. ....+++|++|+++++. ++...
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~~--------l~~l~~L~~L~l~~n-~~~~~~-----~l~~l~~L~~L~l~~n~-l~~~~ 104 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLTG--------IEYAHNIKDLTINNI-HATNYN-----PISGLSNLERLRIMGKD-VTSDK 104 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCTT--------GGGCTTCSEEEEESC-CCSCCG-----GGTTCTTCCEEEEECTT-CBGGG
T ss_pred hhcCCccEEeccCC-CccChHH--------HhcCCCCCEEEccCC-CCCcch-----hhhcCCCCCEEEeECCc-cCccc
Confidence 37889999999985 5654432 236899999999998 555431 23568999999999974 44323
Q ss_pred CCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccccccccccccccccCCccceeecCCCCCCc
Q 044237 115 PSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLDSLT 194 (212)
Q Consensus 115 ~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~L~ 194 (212)
+.....+++|++|++++|. +.... +.....+++|++|++++|..+..+.. ...+++|++|.+.++. ++
T Consensus 105 ~~~l~~l~~L~~L~Ls~n~-i~~~~-~~~l~~l~~L~~L~L~~n~~i~~~~~---------l~~l~~L~~L~l~~n~-i~ 172 (197)
T 4ezg_A 105 IPNLSGLTSLTLLDISHSA-HDDSI-LTKINTLPKVNSIDLSYNGAITDIMP---------LKTLPELKSLNIQFDG-VH 172 (197)
T ss_dssp SCCCTTCTTCCEEECCSSB-CBGGG-HHHHTTCSSCCEEECCSCTBCCCCGG---------GGGCSSCCEEECTTBC-CC
T ss_pred ChhhcCCCCCCEEEecCCc-cCcHh-HHHHhhCCCCCEEEccCCCCccccHh---------hcCCCCCCEEECCCCC-Cc
Confidence 3337789999999999985 33322 23567899999999999986655521 2368999999999875 45
Q ss_pred eecCCCccccCCCCccCC
Q 044237 195 SFCSANYTFKFPSLQDLW 212 (212)
Q Consensus 195 ~~~~~~~~~~~p~L~~l~ 212 (212)
.+.. -..+|+|++|+
T Consensus 173 ~~~~---l~~l~~L~~L~ 187 (197)
T 4ezg_A 173 DYRG---IEDFPKLNQLY 187 (197)
T ss_dssp CCTT---GGGCSSCCEEE
T ss_pred ChHH---hccCCCCCEEE
Confidence 4431 23467787653
No 41
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.06 E-value=1.5e-09 Score=89.39 Aligned_cols=175 Identities=13% Similarity=0.082 Sum_probs=113.3
Q ss_pred ccCCccEEEEcCC-CCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCc-----------
Q 044237 11 LFGSLKQLNIGGD-DSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQ----------- 78 (212)
Q Consensus 11 ~l~~Lk~L~l~~~-~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~----------- 78 (212)
.+++|++|+++.+ ....+|.. .+..++++.++.+.++.+++.+.+.. ...+++|++|.+++
T Consensus 52 ~l~~L~~L~Ls~N~i~~~i~~~-~f~~L~~l~~~l~~~~N~l~~l~~~~------f~~l~~L~~L~l~~n~l~~~~~~~~ 124 (350)
T 4ay9_X 52 GFGDLEKIEISQNDVLEVIEAD-VFSNLPKLHEIRIEKANNLLYINPEA------FQNLPNLQYLLISNTGIKHLPDVHK 124 (350)
T ss_dssp TCTTCCEEEEECCTTCCEECTT-SBCSCTTCCEEEEEEETTCCEECTTS------BCCCTTCCEEEEEEECCSSCCCCTT
T ss_pred CCCCCCEEECcCCCCCCccChh-HhhcchhhhhhhcccCCcccccCchh------hhhccccccccccccccccCCchhh
Confidence 4789999999944 45667766 55688888888777778888775421 11345555555443
Q ss_pred -------------ccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHh
Q 044237 79 -------------HYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAK 145 (212)
Q Consensus 79 -------------~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~ 145 (212)
..++..+.... .......++.|++++. .++.+.+. .....+|+.+.+.++..++.+.. ...+
T Consensus 125 ~~~~~l~~l~l~~~~~i~~l~~~~--f~~~~~~l~~L~L~~N-~i~~i~~~-~f~~~~L~~l~l~~~n~l~~i~~-~~f~ 199 (350)
T 4ay9_X 125 IHSLQKVLLDIQDNINIHTIERNS--FVGLSFESVILWLNKN-GIQEIHNS-AFNGTQLDELNLSDNNNLEELPN-DVFH 199 (350)
T ss_dssp CCBSSCEEEEEESCTTCCEECTTS--STTSBSSCEEEECCSS-CCCEECTT-SSTTEEEEEEECTTCTTCCCCCT-TTTT
T ss_pred cccchhhhhhhccccccccccccc--hhhcchhhhhhccccc-cccCCChh-hccccchhHHhhccCCcccCCCH-HHhc
Confidence 33333332111 0112245777777764 45555443 55567888999988888887743 3457
Q ss_pred cCCCCcEEeeeccccccccccccccccccccccCCccceeecCCCCCCceecCCCccccCCCCccC
Q 044237 146 TLVQLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLDSLTSFCSANYTFKFPSLQDL 211 (212)
Q Consensus 146 ~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~L~~~~~~~~~~~~p~L~~l 211 (212)
.+++|++|+++++ .++.+.. ..|.+|++|.+.++.+++.++. -..+++|+.+
T Consensus 200 ~l~~L~~LdLs~N-~l~~lp~----------~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l 251 (350)
T 4ay9_X 200 GASGPVILDISRT-RIHSLPS----------YGLENLKKLRARSTYNLKKLPT---LEKLVALMEA 251 (350)
T ss_dssp TEECCSEEECTTS-CCCCCCS----------SSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEE
T ss_pred cCcccchhhcCCC-CcCccCh----------hhhccchHhhhccCCCcCcCCC---chhCcChhhC
Confidence 7899999999887 4555532 2478888888888888888875 2346666654
No 42
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.06 E-value=1e-09 Score=96.34 Aligned_cols=185 Identities=15% Similarity=0.089 Sum_probs=90.2
Q ss_pred CCCCccccCCccEEEEc-CCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccc
Q 044237 5 ADFPQHLFGSLKQLNIG-GDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLE 83 (212)
Q Consensus 5 ~~~p~~~l~~Lk~L~l~-~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~ 83 (212)
+.+|...+++|++|++. +.....++.. .+++|++|++++| .++.+.... .....+++|++|+++++. ++
T Consensus 320 ~~lp~~~l~~L~~L~l~~n~~~~~~~~~----~l~~L~~L~ls~n-~l~~~~~~~----~~~~~~~~L~~L~L~~n~-l~ 389 (606)
T 3vq2_A 320 KQFPTLDLPFLKSLTLTMNKGSISFKKV----ALPSLSYLDLSRN-ALSFSGCCS----YSDLGTNSLRHLDLSFNG-AI 389 (606)
T ss_dssp SSCCCCCCSSCCEEEEESCSSCEECCCC----CCTTCCEEECCSS-CEEEEEECC----HHHHCCSCCCEEECCSCS-EE
T ss_pred cccccCCCCccceeeccCCcCccchhhc----cCCCCCEEECcCC-ccCCCcchh----hhhccCCcccEeECCCCc-cc
Confidence 34554478999999999 4455555443 8999999999986 555442100 011245666666666543 33
Q ss_pred ccccc--------------------CC-ccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchh
Q 044237 84 QLCKQ--------------------DS-KLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSS 142 (212)
Q Consensus 84 ~l~~~--------------------~~-~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~ 142 (212)
.++.. .+ .....+++|++|++++|.-.. ..|.....+++|++|++++|.--.... +.
T Consensus 390 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~ 467 (606)
T 3vq2_A 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTL-SN 467 (606)
T ss_dssp EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE-CCTTTTTTCTTCCEEECTTCEEGGGEE-CS
T ss_pred cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc-cchhhhcCCCCCCEEECCCCcCCCcch-HH
Confidence 22100 00 111234455555555543222 222223445555555555543111011 11
Q ss_pred hHhcCCCCcEEeeeccccccccccccccccccccccCCccceeecCCCCCCceecCCCccccCCCCccC
Q 044237 143 TAKTLVQLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLDSLTSFCSANYTFKFPSLQDL 211 (212)
Q Consensus 143 ~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~L~~~~~~~~~~~~p~L~~l 211 (212)
....+++|++|++++|. +..+... ....+++|++|++.++. ++.+.+.. -..+++|++|
T Consensus 468 ~~~~l~~L~~L~Ls~n~-l~~~~~~-------~~~~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L 526 (606)
T 3vq2_A 468 VFANTTNLTFLDLSKCQ-LEQISWG-------VFDTLHRLQLLNMSHNN-LLFLDSSH-YNQLYSLSTL 526 (606)
T ss_dssp CCTTCTTCCEEECTTSC-CCEECTT-------TTTTCTTCCEEECCSSC-CSCEEGGG-TTTCTTCCEE
T ss_pred hhccCCCCCEEECCCCc-CCccChh-------hhcccccCCEEECCCCc-CCCcCHHH-ccCCCcCCEE
Confidence 23445555555555552 2222110 12246788888888774 34332211 1224556554
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.05 E-value=3.6e-09 Score=86.18 Aligned_cols=13 Identities=8% Similarity=-0.192 Sum_probs=6.9
Q ss_pred CCccceeecCCCC
Q 044237 179 FRKLKMLELRDLD 191 (212)
Q Consensus 179 ~p~L~~L~l~~cp 191 (212)
+++|+.|.+.+-|
T Consensus 292 ~~~l~~l~l~~N~ 304 (330)
T 1xku_A 292 KASYSGVSLFSNP 304 (330)
T ss_dssp SCCCSEEECCSSS
T ss_pred cccccceEeecCc
Confidence 3455555555554
No 44
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.05 E-value=1.5e-09 Score=82.74 Aligned_cols=139 Identities=16% Similarity=0.141 Sum_probs=98.7
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+|.+..++|++|+++++.+..+|.. .++.+++|++|+++++ .++.+++.. ...+++|++|++++. +++.+
T Consensus 21 ~~p~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~------~~~l~~L~~L~Ls~n-~l~~~ 91 (208)
T 2o6s_A 21 SVPTGIPAQTTYLDLETNSLKSLPNG-VFDELTSLTQLYLGGN-KLQSLPNGV------FNKLTSLTYLNLSTN-QLQSL 91 (208)
T ss_dssp SCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSS-CCCCCCTTT------TTTCTTCCEEECCSS-CCCCC
T ss_pred CCCCCCCCCCcEEEcCCCccCcCChh-hhcccccCcEEECCCC-ccCccChhh------cCCCCCcCEEECCCC-cCCcc
Confidence 56667788999999996666677765 5568999999999885 666544321 135789999999886 35554
Q ss_pred cccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccc
Q 044237 86 CKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECR 159 (212)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 159 (212)
.. .....+++|++|+++++ .++.+.+.....+++|++|+++++. ++.+.. .....+++|++|++.+++
T Consensus 92 ~~---~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 92 PN---GVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPD-GVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CT---TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred CH---hHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCc-cceeCH-HHhccCCCccEEEecCCC
Confidence 22 22356889999999887 4555555435678899999999874 555432 345678899999998864
No 45
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.04 E-value=2.6e-09 Score=90.51 Aligned_cols=103 Identities=17% Similarity=0.076 Sum_probs=47.1
Q ss_pred cCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccccccccccccc
Q 044237 96 FQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDKEGVEKE 175 (212)
Q Consensus 96 l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~ 175 (212)
+++|++|+++++. +..+.+.....+++|++|++++|. +..+.+ .....+++|++|+++++.- ..+... .
T Consensus 298 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~l-~~~~~~-------~ 366 (455)
T 3v47_A 298 FTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNF-LGSIDS-RMFENLDKLEVLDLSYNHI-RALGDQ-------S 366 (455)
T ss_dssp CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECG-GGGTTCTTCCEEECCSSCC-CEECTT-------T
T ss_pred CCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCc-cCCcCh-hHhcCcccCCEEECCCCcc-cccChh-------h
Confidence 3444444444442 222223223445555555555552 333321 2334556666666665532 222110 1
Q ss_pred cccCCccceeecCCCCCCceecCCCccccCCCCccC
Q 044237 176 EIVFRKLKMLELRDLDSLTSFCSANYTFKFPSLQDL 211 (212)
Q Consensus 176 ~~~~p~L~~L~l~~cp~L~~~~~~~~~~~~p~L~~l 211 (212)
...+++|++|++.++ .++.+..+. -..+++|++|
T Consensus 367 ~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L 400 (455)
T 3v47_A 367 FLGLPNLKELALDTN-QLKSVPDGI-FDRLTSLQKI 400 (455)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEE
T ss_pred ccccccccEEECCCC-ccccCCHhH-hccCCcccEE
Confidence 124677777777764 455554432 1234555554
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.04 E-value=1e-09 Score=96.28 Aligned_cols=140 Identities=15% Similarity=0.100 Sum_probs=103.9
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+|.+.-+++++|+++.+.++.+|.. .++.+++|++|++++| +++.+.+. ....+++|++|++++. +++.+
T Consensus 45 ~vP~~lp~~~~~LdLs~N~i~~l~~~-~f~~l~~L~~L~Ls~N-~i~~i~~~------~f~~L~~L~~L~Ls~N-~l~~l 115 (635)
T 4g8a_A 45 KIPDNLPFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRC-EIQTIEDG------AYQSLSHLSTLILTGN-PIQSL 115 (635)
T ss_dssp SCCSSSCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTC-CCCEECTT------TTTTCTTCCEEECTTC-CCCEE
T ss_pred ccCCCCCcCCCEEEeeCCCCCCCCHH-HHhCCCCCCEEECCCC-cCCCcChh------HhcCCCCCCEEEccCC-cCCCC
Confidence 45655556899999998788888876 5679999999999996 77776542 1235889999999987 47766
Q ss_pred cccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccc
Q 044237 86 CKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECR 159 (212)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 159 (212)
..+ ....+++|++|+++++ +++.+.+.....+++|++|+++++. ++.+..+.....+++|++|++.++.
T Consensus 116 ~~~---~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 116 ALG---AFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CGG---GGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CHH---HhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCcc
Confidence 432 2356889999999988 4566555446778999999999874 4443334456778999999998763
No 47
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.04 E-value=2e-09 Score=86.61 Aligned_cols=123 Identities=14% Similarity=0.119 Sum_probs=64.7
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
.+++|++|++.++.+..++. ++.+++|++|++++| .++.+.+ ...+++|++|.++++. ++.+.
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~---~~~l~~L~~L~L~~n-~l~~~~~--------l~~l~~L~~L~l~~n~-l~~~~---- 106 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGN-KLTDIKP--------LANLKNLGWLFLDENK-VKDLS---- 106 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT---GGGCTTCCEEECCSS-CCCCCGG--------GTTCTTCCEEECCSSC-CCCGG----
T ss_pred hcCcccEEEccCCCcccChh---HhcCCCCCEEEccCC-ccCCCcc--------cccCCCCCEEECCCCc-CCCCh----
Confidence 46778888877555555543 347778888888775 4544332 1245666666666542 33321
Q ss_pred ccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecc
Q 044237 91 KLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMREC 158 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c 158 (212)
....+++|++|+++++. ++.+ +. ...+++|+.|++++|. ++.+ .....+++|++|+++++
T Consensus 107 -~l~~l~~L~~L~L~~n~-i~~~-~~-l~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 107 -SLKDLKKLKSLSLEHNG-ISDI-NG-LVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp -GGTTCTTCCEEECTTSC-CCCC-GG-GGGCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSS
T ss_pred -hhccCCCCCEEECCCCc-CCCC-hh-hcCCCCCCEEEccCCc-CCcc---hhhccCCCCCEEEccCC
Confidence 12345556666665552 3322 22 4445555555555542 3222 12344555555555554
No 48
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.04 E-value=2.6e-09 Score=93.80 Aligned_cols=38 Identities=18% Similarity=0.105 Sum_probs=26.8
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecC
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFS 49 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~ 49 (212)
.+++|++|++..+....++.. .+..+++|++|++++|.
T Consensus 299 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFENLCQI-SASNFPSLTHLSIKGNT 336 (606)
T ss_dssp SCTTCCEEECTTCCCSBGGGG-CGGGCTTCSEEECCSCS
T ss_pred ccccCCEEECccCCcCcCchh-hhhccCcCCEEECCCCC
Confidence 478899999985555544433 34588888888888864
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.03 E-value=1.1e-09 Score=95.09 Aligned_cols=177 Identities=17% Similarity=0.156 Sum_probs=96.9
Q ss_pred cCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCccee-ccccccccccccccccccEEecCcccccccccccCC
Q 044237 12 FGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEV-FSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i-~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
+++|++|++..+.+..+|.+ +.+.+++|++|++++|. +... ++.. .....+++|++|+++++ +++.+...+
T Consensus 309 ~~~L~~L~l~~n~l~~ip~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~----~~~~~l~~L~~L~Ls~N-~l~~~~~~~- 380 (549)
T 2z81_A 309 LEKVKRITVENSKVFLVPCS-FSQHLKSLEFLDLSENL-MVEEYLKNS----ACKGAWPSLQTLVLSQN-HLRSMQKTG- 380 (549)
T ss_dssp STTCCEEEEESSCCCCCCHH-HHHHCTTCCEEECCSSC-CCHHHHHHH----TCTTSSTTCCEEECTTS-CCCCHHHHH-
T ss_pred cccceEEEeccCccccCCHH-HHhcCccccEEEccCCc-cccccccch----hhhhccccCcEEEccCC-cccccccch-
Confidence 45788888885566778876 65688999999998863 3322 1100 01124677777777765 344332100
Q ss_pred ccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecch----------------hhHhcCCCCcEEe
Q 044237 91 KLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTS----------------STAKTLVQLVTVR 154 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~----------------~~~~~l~~L~~L~ 154 (212)
.....+++|++|++++| +++.+ |.....+++|++|++++|. ++.+... .....+++|++|+
T Consensus 381 ~~~~~l~~L~~L~Ls~N-~l~~l-p~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~ 457 (549)
T 2z81_A 381 EILLTLKNLTSLDISRN-TFHPM-PDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELY 457 (549)
T ss_dssp HHGGGCTTCCEEECTTC-CCCCC-CSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEE
T ss_pred hhhhcCCCCCEEECCCC-CCccC-ChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEE
Confidence 01234566666666666 34443 3224455566666666553 2222110 0012456666666
Q ss_pred eeccccccccccccccccccccccCCccceeecCCCCCCceecCCCccccCCCCccC
Q 044237 155 MRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLDSLTSFCSANYTFKFPSLQDL 211 (212)
Q Consensus 155 i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~L~~~~~~~~~~~~p~L~~l 211 (212)
++++ .+..+.. ...+++|+.|+++++ .++.+..+. -..+++|+.|
T Consensus 458 Ls~N-~l~~ip~---------~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L 502 (549)
T 2z81_A 458 ISRN-KLKTLPD---------ASLFPVLLVMKISRN-QLKSVPDGI-FDRLTSLQKI 502 (549)
T ss_dssp CCSS-CCSSCCC---------GGGCTTCCEEECCSS-CCCCCCTTG-GGGCTTCCEE
T ss_pred CCCC-ccCcCCC---------cccCccCCEEecCCC-ccCCcCHHH-HhcCcccCEE
Confidence 6666 2333321 124788888888886 566655542 1245666654
No 50
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.01 E-value=4e-09 Score=90.06 Aligned_cols=35 Identities=17% Similarity=0.071 Sum_probs=19.1
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeec
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYF 48 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C 48 (212)
.+++|++|++.++....++. .+.+++|++|++++|
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n 231 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP---LGILTNLDELSLNGN 231 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSS
T ss_pred cCCCCCEEEecCCccccccc---ccccCCCCEEECCCC
Confidence 45667777776333333322 135666666666664
No 51
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.99 E-value=4.3e-09 Score=84.58 Aligned_cols=154 Identities=16% Similarity=0.063 Sum_probs=105.7
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
.+++|++|+++.+.+..++.. +.+++|++|+++++ .++.++... ..+++|++|.+++. +++.+..
T Consensus 53 ~l~~L~~L~L~~n~l~~~~~~---~~l~~L~~L~Ls~N-~l~~l~~~~-------~~l~~L~~L~l~~N-~l~~l~~--- 117 (290)
T 1p9a_G 53 PYTRLTQLNLDRAELTKLQVD---GTLPVLGTLDLSHN-QLQSLPLLG-------QTLPALTVLDVSFN-RLTSLPL--- 117 (290)
T ss_dssp TCTTCCEEECTTSCCCEEECC---SCCTTCCEEECCSS-CCSSCCCCT-------TTCTTCCEEECCSS-CCCCCCS---
T ss_pred cCCCCCEEECCCCccCcccCC---CCCCcCCEEECCCC-cCCcCchhh-------ccCCCCCEEECCCC-cCcccCH---
Confidence 478999999996667777653 48999999999985 666554322 25889999999886 4555432
Q ss_pred ccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecccccccccccccc
Q 044237 91 KLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDKE 170 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 170 (212)
.....+++|++|+++++ .++.+.+.....+++|+.|+++++. ++.+.. .....+++|+.|++.++. +..+...
T Consensus 118 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~-~~~~~l~~L~~L~L~~N~-l~~ip~~--- 190 (290)
T 1p9a_G 118 GALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNN-LTELPA-GLLNGLENLDTLLLQENS-LYTIPKG--- 190 (290)
T ss_dssp STTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CSCCCT-TTTTTCTTCCEEECCSSC-CCCCCTT---
T ss_pred HHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCc-CCccCH-HHhcCcCCCCEEECCCCc-CCccChh---
Confidence 22356789999999987 4555555434568899999998874 655533 345678899999998864 3343221
Q ss_pred ccccccccCCccceeecCCCC
Q 044237 171 GVEKEEIVFRKLKMLELRDLD 191 (212)
Q Consensus 171 ~~~~~~~~~p~L~~L~l~~cp 191 (212)
....++|+.|.+.+-|
T Consensus 191 -----~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 191 -----FFGSHLLPFAFLHGNP 206 (290)
T ss_dssp -----TTTTCCCSEEECCSCC
T ss_pred -----hcccccCCeEEeCCCC
Confidence 1234677888777544
No 52
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.99 E-value=8.8e-09 Score=85.78 Aligned_cols=130 Identities=12% Similarity=0.117 Sum_probs=91.8
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
.+++|++|++.++.+..++.. .++.+++|++|+++++ .++.+++. ....+++|++|+++++ +++.+..
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~------~~~~l~~L~~L~L~~n-~l~~l~~--- 134 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFN-AIRYLPPH------VFQNVPLLTVLVLERN-DLSSLPR--- 134 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSS-CCCCCCTT------TTTTCTTCCEEECCSS-CCCCCCT---
T ss_pred ccccCcEEECCCCcccccChh-hccCCCCcCEEECCCC-CCCcCCHH------HhcCCCCCCEEECCCC-ccCcCCH---
Confidence 478999999996666667664 4568999999999886 56554432 1236889999999987 4555532
Q ss_pred ccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecc
Q 044237 91 KLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMREC 158 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c 158 (212)
.....+++|++|+++++. ++.+.+.....+++|++|+++++. ++.+ ....+++|+.|.+.++
T Consensus 135 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~----~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 135 GIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR-LTHV----DLSLIPSLFHANVSYN 196 (390)
T ss_dssp TTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSC-CSBC----CGGGCTTCSEEECCSS
T ss_pred HHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCc-CCcc----ccccccccceeecccc
Confidence 223568899999999874 444445446678999999998875 4433 2456788888888775
No 53
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.99 E-value=1.7e-09 Score=93.82 Aligned_cols=140 Identities=16% Similarity=0.130 Sum_probs=85.0
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+|.+.+++|++|+++++.++.++.. .++.+++|++|++++| .++.+.+. ....+++|++|+++++. ++.+
T Consensus 19 ~ip~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n-~i~~~~~~------~~~~l~~L~~L~Ls~n~-l~~~ 89 (549)
T 2z81_A 19 SIPSGLTAAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSS-RINTIEGD------AFYSLGSLEHLDLSDNH-LSSL 89 (549)
T ss_dssp SCCSCCCTTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTS-CCCEECTT------TTTTCTTCCEEECTTSC-CCSC
T ss_pred cccccCCCCccEEECcCCccCccChh-hhhcCCcccEEECCCC-CcCccChh------hccccccCCEEECCCCc-cCcc
Confidence 56666778999999995556655443 4568999999999886 66665432 12256777888777652 3333
Q ss_pred cccCCccCCCcCcccEEEEecCcccccc-CCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccc
Q 044237 86 CKQDSKLGPIFQYLEILKVYDCQSLLIL-LPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECR 159 (212)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l-~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 159 (212)
.. .....+++|++|+++++. ++.+ .+.....+++|++|++++|..+..+.. .....+++|++|++.++.
T Consensus 90 ~~---~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 90 SS---SWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR-IDFAGLTSLNELEIKALS 159 (549)
T ss_dssp CH---HHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETT
T ss_pred CH---HHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCH-hhhhcccccCeeeccCCc
Confidence 11 112456677777777663 2221 122255666777777777665544422 234556667777776654
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.99 E-value=6.6e-09 Score=91.46 Aligned_cols=130 Identities=12% Similarity=0.117 Sum_probs=95.3
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
.+++|++|+++++.+..++.. .++.+++|++|++++| .+..+++.. ...+++|++|+++++ +++.++.
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~------~~~l~~L~~L~L~~n-~l~~l~~--- 140 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFN-AIRYLPPHV------FQNVPLLTVLVLERN-DLSSLPR--- 140 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSS-CCCCCCTTT------TTTCTTCCEEECCSS-CCCCCCT---
T ss_pred cCCCCcEEECCCCCCCCCChH-HhcCCCCCCEEECCCC-cCCCCCHHH------HcCCCCCCEEEeeCC-CCCCCCH---
Confidence 478999999996666677654 4569999999999986 566554421 236899999999987 4665532
Q ss_pred ccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecc
Q 044237 91 KLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMREC 158 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c 158 (212)
.....+++|++|+++++. +..+.+.....+++|++|+++++. +..+ ....+++|+.|.+.++
T Consensus 141 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~----~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 141 GIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNR-LTHV----DLSLIPSLFHANVSYN 202 (597)
T ss_dssp TTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSC-CSBC----CGGGCTTCSEEECCSS
T ss_pred HHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCC-CCCc----ChhhhhhhhhhhcccC
Confidence 223568999999999984 555556556788999999999875 4443 2456788888888776
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.97 E-value=4.6e-09 Score=96.05 Aligned_cols=141 Identities=14% Similarity=0.070 Sum_probs=93.8
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
..|. ..++|++|+++.+.++.++.. .++.+++|++|++++|.....+.+. ....+++|++|.++++. ++.+
T Consensus 18 ~vP~-lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~------~f~~L~~L~~L~Ls~N~-l~~~ 88 (844)
T 3j0a_A 18 QVPQ-VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKE------AFRNLPNLRILDLGSSK-IYFL 88 (844)
T ss_dssp CCCS-SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTT------TTSSCTTCCEEECTTCC-CCEE
T ss_pred CCCC-CCCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHH------HhcCCCCCCEEECCCCc-Cccc
Confidence 4565 678999999996666666444 4569999999999998665555321 12367889999998763 4443
Q ss_pred cccCCccCCCcCcccEEEEecCccccccCC-CCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccc
Q 044237 86 CKQDSKLGPIFQYLEILKVYDCQSLLILLP-SSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECR 159 (212)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~-~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 159 (212)
. +.....+++|++|++++|.--...++ .....+++|++|+++++. +..+......+++++|++|++.++.
T Consensus 89 ~---p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 89 H---PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp C---TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred C---HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCc
Confidence 1 22335678888888888743222211 125567888888888875 3333333356778888888888764
No 56
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.97 E-value=2.5e-09 Score=94.53 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=50.0
Q ss_pred ccccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhc
Q 044237 67 KLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKT 146 (212)
Q Consensus 67 ~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~ 146 (212)
.+++|+.|.++++. +..+. ....+++|+.|++++|. +..+ +. +..+++|+.|++++|. +..+.+ ...
T Consensus 107 ~l~~L~~L~Ls~N~-l~~l~-----~l~~l~~L~~L~Ls~N~-l~~l-~~-l~~l~~L~~L~Ls~N~-l~~~~~---l~~ 173 (605)
T 1m9s_A 107 DLKKLKSLSLEHNG-ISDIN-----GLVHLPQLESLYLGNNK-ITDI-TV-LSRLTKLDTLSLEDNQ-ISDIVP---LAG 173 (605)
T ss_dssp TCTTCCEEECTTSC-CCCCG-----GGGGCTTCSEEECCSSC-CCCC-GG-GGSCTTCSEEECCSSC-CCCCGG---GTT
T ss_pred cCCCCCEEEecCCC-CCCCc-----cccCCCccCEEECCCCc-cCCc-hh-hcccCCCCEEECcCCc-CCCchh---hcc
Confidence 34555555555442 22221 12345566666666552 3332 22 4455666666666553 333322 455
Q ss_pred CCCCcEEeeeccccccccccccccccccccccCCccceeecCCCC
Q 044237 147 LVQLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLD 191 (212)
Q Consensus 147 l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp 191 (212)
+++|+.|++++|. +..+. ....+++|+.|.+.+++
T Consensus 174 l~~L~~L~Ls~N~-i~~l~---------~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 174 LTKLQNLYLSKNH-ISDLR---------ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CTTCCEEECCSSC-CCBCG---------GGTTCTTCSEEECCSEE
T ss_pred CCCCCEEECcCCC-CCCCh---------HHccCCCCCEEEccCCc
Confidence 5666666666652 22221 11246677777776654
No 57
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.97 E-value=2.1e-10 Score=100.28 Aligned_cols=60 Identities=15% Similarity=0.071 Sum_probs=28.1
Q ss_pred CcCcccEEEEecCc-cccc-cCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeee
Q 044237 95 IFQYLEILKVYDCQ-SLLI-LLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMR 156 (212)
Q Consensus 95 ~l~~L~~L~i~~C~-~L~~-l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~ 156 (212)
.+++|++|++++|. .+.. .++.....+++|++|++++|..+..+ +.....+++|++|.+.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l--~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL--ATLLQRAPQLEELGTG 243 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHH--HHHHHHCTTCSEEECS
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHH--HHHHhcCCcceEcccc
Confidence 44566666666654 1110 00000123466666666666544432 2234455666666543
No 58
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.97 E-value=4.3e-09 Score=81.68 Aligned_cols=139 Identities=16% Similarity=0.068 Sum_probs=95.7
Q ss_pred CCCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCccccccc
Q 044237 5 ADFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQ 84 (212)
Q Consensus 5 ~~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~ 84 (212)
+.+|.+..++|++|+++++.+..++.. .++.+++|++|+++++ .++.+.... ...+++|+.|++++. +++.
T Consensus 32 ~~ip~~~~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~N-~l~~i~~~~------~~~l~~L~~L~Ls~N-~l~~ 102 (229)
T 3e6j_A 32 ASVPAGIPTNAQILYLHDNQITKLEPG-VFDSLINLKELYLGSN-QLGALPVGV------FDSLTQLTVLDLGTN-QLTV 102 (229)
T ss_dssp SSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTTT------TTTCTTCCEEECCSS-CCCC
T ss_pred CccCCCCCCCCCEEEcCCCccCccCHH-HhhCccCCcEEECCCC-CCCCcChhh------cccCCCcCEEECCCC-cCCc
Confidence 356666778899999995555555444 4568899999999885 565554321 135788999999886 5665
Q ss_pred ccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccc
Q 044237 85 LCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECR 159 (212)
Q Consensus 85 l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 159 (212)
+.. .....+++|+.|+++++ +++.+ |.....+++|+.|+++++ +++.+.. .....+++|+.|++.+.+
T Consensus 103 l~~---~~~~~l~~L~~L~Ls~N-~l~~l-p~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 103 LPS---AVFDRLVHLKELFMCCN-KLTEL-PRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCT---TTTTTCTTCCEEECCSS-CCCSC-CTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred cCh---hHhCcchhhCeEeccCC-ccccc-CcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCC
Confidence 532 22246788999999876 35554 444678889999999886 4655533 345678889999887654
No 59
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.96 E-value=3.5e-09 Score=85.13 Aligned_cols=146 Identities=15% Similarity=0.169 Sum_probs=96.5
Q ss_pred cccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccC
Q 044237 10 HLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQD 89 (212)
Q Consensus 10 ~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~ 89 (212)
..+++|++|+++.+.+..++. +..+++|++|+++++ .++.+.. ...+++|++|+++++ +++.+.
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~~--------l~~l~~L~~L~L~~n-~i~~~~--- 128 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDEN-KVKDLSS--------LKDLKKLKSLSLEHN-GISDIN--- 128 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSS-CCCCGGG--------GTTCTTCCEEECTTS-CCCCCG---
T ss_pred hcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCC-cCCCChh--------hccCCCCCEEECCCC-cCCCCh---
Confidence 458999999999656666553 358999999999985 5554322 235788899988876 355431
Q ss_pred CccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccccccc
Q 044237 90 SKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDK 169 (212)
Q Consensus 90 ~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 169 (212)
....+++|+.|+++++. ++.+ +. ...+++|+.|++++|. ++.+.+ ...+++|+.|+++++. +..+..
T Consensus 129 --~l~~l~~L~~L~l~~n~-l~~~-~~-l~~l~~L~~L~L~~N~-l~~~~~---l~~l~~L~~L~L~~N~-i~~l~~--- 195 (291)
T 1h6t_A 129 --GLVHLPQLESLYLGNNK-ITDI-TV-LSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQNLYLSKNH-ISDLRA--- 195 (291)
T ss_dssp --GGGGCTTCCEEECCSSC-CCCC-GG-GGGCTTCSEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCBCGG---
T ss_pred --hhcCCCCCCEEEccCCc-CCcc-hh-hccCCCCCEEEccCCc-cccchh---hcCCCccCEEECCCCc-CCCChh---
Confidence 12457788888888763 3433 22 5677888888888773 554432 5677888888888773 333311
Q ss_pred cccccccccCCccceeecCCC
Q 044237 170 EGVEKEEIVFRKLKMLELRDL 190 (212)
Q Consensus 170 ~~~~~~~~~~p~L~~L~l~~c 190 (212)
...+++|+.|++.++
T Consensus 196 ------l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 196 ------LAGLKNLDVLELFSQ 210 (291)
T ss_dssp ------GTTCTTCSEEEEEEE
T ss_pred ------hccCCCCCEEECcCC
Confidence 124677777777665
No 60
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.96 E-value=2.9e-09 Score=90.99 Aligned_cols=137 Identities=12% Similarity=0.014 Sum_probs=65.6
Q ss_pred CccccCCccEEEEc-CCCCceechHHHHhhcCCCcEEEEeecCCcceecccccc-------------ccccccccccccE
Q 044237 8 PQHLFGSLKQLNIG-GDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGC-------------LEKHVGKLAMIKE 73 (212)
Q Consensus 8 p~~~l~~Lk~L~l~-~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~-------------~~~~~~~l~~L~~ 73 (212)
+.+.+++|++|+++ +.....++.. .+++|++|+++++ .++.+. .... .......+++|++
T Consensus 143 ~l~~l~~L~~L~l~~n~~~~~~~~~----~l~~L~~L~ls~n-~l~~l~-l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~ 216 (457)
T 3bz5_A 143 DVSHNTQLTELDCHLNKKITKLDVT----PQTQLTTLDCSFN-KITELD-VSQNKLLNRLNCDTNNITKLDLNQNIQLTF 216 (457)
T ss_dssp CCTTCTTCCEEECTTCSCCCCCCCT----TCTTCCEEECCSS-CCCCCC-CTTCTTCCEEECCSSCCSCCCCTTCTTCSE
T ss_pred ccccCCcCCEEECCCCCcccccccc----cCCcCCEEECCCC-ccceec-cccCCCCCEEECcCCcCCeeccccCCCCCE
Confidence 34456777777777 4344444433 6677777777664 444332 1100 0001123455555
Q ss_pred EecCcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCC----------CeEEEcCCCCCceecchhh
Q 044237 74 LQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNL----------TEIVAFGCKELIHLVTSST 143 (212)
Q Consensus 74 L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L----------~~L~i~~C~~L~~l~~~~~ 143 (212)
|+++++ +++.++ ...+++|+.|+++++ .++.+.+ ..+++| +.|++++|..+..++
T Consensus 217 L~Ls~N-~l~~ip------~~~l~~L~~L~l~~N-~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~---- 281 (457)
T 3bz5_A 217 LDCSSN-KLTEID------VTPLTQLTYFDCSVN-PLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ---- 281 (457)
T ss_dssp EECCSS-CCSCCC------CTTCTTCSEEECCSS-CCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----
T ss_pred EECcCC-cccccC------ccccCCCCEEEeeCC-cCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc----
Confidence 555543 233321 134566666666665 2333221 223333 334444444333321
Q ss_pred HhcCCCCcEEeeeccccccccc
Q 044237 144 AKTLVQLVTVRMRECRAMTEVV 165 (212)
Q Consensus 144 ~~~l~~L~~L~i~~c~~l~~i~ 165 (212)
...+++|+.|++++|..+..+.
T Consensus 282 ~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 282 AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp CTTCTTCCCCCCTTCTTCCEEE
T ss_pred ccccccCCEEECCCCcccceec
Confidence 2455677777777776655543
No 61
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.95 E-value=3.9e-09 Score=93.90 Aligned_cols=164 Identities=20% Similarity=0.188 Sum_probs=107.0
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+|.+..+++++|+++++.+..+|.. .++.+++|++|+++++ .++.+.+. ....+++|++|+++++ +++.+
T Consensus 18 ~ip~~~~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~------~~~~l~~L~~L~L~~n-~l~~l 88 (680)
T 1ziw_A 18 QVPDDLPTNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFN-TISKLEPE------LCQKLPMLKVLNLQHN-ELSQL 88 (680)
T ss_dssp SCCSCSCTTCSEEECCSSCCCCCCGG-GGGGGTTCSEEECCSS-CCCCCCTT------HHHHCTTCCEEECCSS-CCCCC
T ss_pred ccccccCCCCcEEECCCCCCCCcCHH-HHhCCCcCcEEECCCC-ccCccCHH------HHhcccCcCEEECCCC-ccCcc
Confidence 46666668999999996666667765 5678999999999885 55544331 1225788999999876 45555
Q ss_pred cccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccc
Q 044237 86 CKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVV 165 (212)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~ 165 (212)
.. .....+++|++|+++++. +..+.+.....+++|++|++++|. +....+ .....+++|++|++.++. +..+.
T Consensus 89 ~~---~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~ 161 (680)
T 1ziw_A 89 SD---KTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNG-LSSTKL-GTQVQLENLQELLLSNNK-IQALK 161 (680)
T ss_dssp CT---TTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSC-CSCCCC-CSSSCCTTCCEEECCSSC-CCCBC
T ss_pred Ch---hhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCc-ccccCc-hhhcccccCCEEEccCCc-ccccC
Confidence 32 123567889999998874 455554446678889999998875 333322 234577888888888864 22221
Q ss_pred cccccccccccccCCccceeecCCC
Q 044237 166 INDKEGVEKEEIVFRKLKMLELRDL 190 (212)
Q Consensus 166 ~~~~~~~~~~~~~~p~L~~L~l~~c 190 (212)
...- .....++|++|++.++
T Consensus 162 ~~~~-----~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 162 SEEL-----DIFANSSLKKLELSSN 181 (680)
T ss_dssp HHHH-----GGGTTCEESEEECTTC
T ss_pred HHHh-----hccccccccEEECCCC
Confidence 1100 0112467777777766
No 62
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.95 E-value=7.3e-10 Score=98.38 Aligned_cols=133 Identities=12% Similarity=0.096 Sum_probs=72.4
Q ss_pred ccCCccEEEEcCCCCce------------------echHHHHh--hcCCCcEEEEeecCCcceecccccccccccccccc
Q 044237 11 LFGSLKQLNIGGDDSAC------------------FPIWNVLE--RFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAM 70 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~------------------~p~~~~~~--~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~ 70 (212)
.+++|++|+++.+.++. +|.. ++ .+++|++|++++|.-...+++.. ..+++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~--l~~~~l~~L~~L~L~~n~l~~~~p~~l-------~~l~~ 274 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED--LKWDNLKDLTDVEVYNCPNLTKLPTFL-------KALPE 274 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC--CCGGGCTTCCEEEEECCTTCSSCCTTT-------TTCSS
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchh--hhhcccCCCCEEEecCCcCCccChHHH-------hcCCC
Confidence 48889999999444555 6764 45 88999999999875444444322 25677
Q ss_pred ccEEecCccccccc--ccccCCc--cCCCcCcccEEEEecCccccccCCC--CcccCCCCCeEEEcCCCCCc-eecchhh
Q 044237 71 IKELQLHQHYHLEQ--LCKQDSK--LGPIFQYLEILKVYDCQSLLILLPS--SSVSFRNLTEIVAFGCKELI-HLVTSST 143 (212)
Q Consensus 71 L~~L~l~~~~~L~~--l~~~~~~--~~~~l~~L~~L~i~~C~~L~~l~~~--~~~~l~~L~~L~i~~C~~L~-~l~~~~~ 143 (212)
|++|+++++..++. ++..-.. ....+++|++|+++++. ++.+ |. ....+++|++|+++++. ++ .++ .
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~i-p~~~~l~~l~~L~~L~L~~N~-l~g~ip---~ 348 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTF-PVETSLQKMKKLGMLECLYNQ-LEGKLP---A 348 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSC-CCHHHHTTCTTCCEEECCSCC-CEEECC---C
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCcc-CchhhhccCCCCCEEeCcCCc-Cccchh---h
Confidence 77777777653432 2110000 00123566666666653 2232 32 24555666666666553 22 221 2
Q ss_pred HhcCCCCcEEeeecc
Q 044237 144 AKTLVQLVTVRMREC 158 (212)
Q Consensus 144 ~~~l~~L~~L~i~~c 158 (212)
...+++|++|++.++
T Consensus 349 ~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 349 FGSEIKLASLNLAYN 363 (636)
T ss_dssp CEEEEEESEEECCSS
T ss_pred hCCCCCCCEEECCCC
Confidence 334455555555544
No 63
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.94 E-value=4e-09 Score=86.01 Aligned_cols=94 Identities=17% Similarity=0.031 Sum_probs=53.5
Q ss_pred CCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccccccccccc
Q 044237 94 PIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDKEGVE 173 (212)
Q Consensus 94 ~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 173 (212)
..+++|+.|+++++ .++.+.+.....+++|++|+++++. ++.++. ....+++|++|+++++. +..+....-...
T Consensus 214 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~--~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~- 287 (332)
T 2ft3_A 214 LRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNK-LSRVPA--GLPDLKLLQVVYLHTNN-ITKVGVNDFCPV- 287 (332)
T ss_dssp TTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSC-CCBCCT--TGGGCTTCCEEECCSSC-CCBCCTTSSSCS-
T ss_pred cCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCc-CeecCh--hhhcCccCCEEECCCCC-CCccChhHcccc-
Confidence 34566777777765 3444444335567778888887763 544422 35667788888887764 333322110000
Q ss_pred cccccCCccceeecCCCCCC
Q 044237 174 KEEIVFRKLKMLELRDLDSL 193 (212)
Q Consensus 174 ~~~~~~p~L~~L~l~~cp~L 193 (212)
.....+++|+.|.+.+.|-.
T Consensus 288 ~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 288 GFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp SCCSSSCCBSEEECCSSSSC
T ss_pred ccccccccccceEeecCccc
Confidence 00112677888888888743
No 64
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.94 E-value=7.6e-09 Score=79.79 Aligned_cols=139 Identities=16% Similarity=0.172 Sum_probs=96.0
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+|....++|++|++.++.+..+|.. .++.+++|++|+++++ .++.+.+. ....+++|++|++++. +++.+
T Consensus 25 ~iP~~l~~~l~~L~l~~n~i~~i~~~-~~~~l~~L~~L~Ls~N-~i~~~~~~------~~~~l~~L~~L~Ls~N-~l~~l 95 (220)
T 2v9t_B 25 EIPTNLPETITEIRLEQNTIKVIPPG-AFSPYKKLRRIDLSNN-QISELAPD------AFQGLRSLNSLVLYGN-KITEL 95 (220)
T ss_dssp SCCSSCCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECCSS-CCCEECTT------TTTTCSSCCEEECCSS-CCCCC
T ss_pred cCCCccCcCCCEEECCCCcCCCcCHh-HhhCCCCCCEEECCCC-cCCCcCHH------HhhCCcCCCEEECCCC-cCCcc
Confidence 45655667899999986677777765 4568889999999885 66655332 1235788999999875 45555
Q ss_pred cccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccc
Q 044237 86 CKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECR 159 (212)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 159 (212)
.. .....+++|++|+++++ .++.+.+.....+++|+.|+++++. ++.+.. .....+++|++|++.+.+
T Consensus 96 ~~---~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 96 PK---SLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK-LQTIAK-GTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CT---TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CH---hHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCc-CCEECH-HHHhCCCCCCEEEeCCCC
Confidence 32 22346788999999886 4555555546678889999998874 554432 345667888988887654
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.94 E-value=6.8e-09 Score=84.26 Aligned_cols=163 Identities=17% Similarity=0.109 Sum_probs=85.8
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceecccccc----------ccccccccccccEEecCccc
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGC----------LEKHVGKLAMIKELQLHQHY 80 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~----------~~~~~~~l~~L~~L~l~~~~ 80 (212)
.+++|++|+++.+.+...+. ++.+++|++|++++| .++.+...... .......+++|++|.+++..
T Consensus 56 ~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n-~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~ 131 (317)
T 3o53_A 56 PFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNN-YVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK 131 (317)
T ss_dssp TCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSS-EEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSC
T ss_pred CCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCC-ccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCC
Confidence 57899999999555544332 248899999999885 45544321100 00011235556666655431
Q ss_pred ccccccccC---------------------Cc-cCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCcee
Q 044237 81 HLEQLCKQD---------------------SK-LGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHL 138 (212)
Q Consensus 81 ~L~~l~~~~---------------------~~-~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l 138 (212)
++.+.... +. ....+++|++|+++++. ++.+ +. ...+++|++|+++++. ++.+
T Consensus 132 -l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~-~~-~~~l~~L~~L~Ls~N~-l~~l 206 (317)
T 3o53_A 132 -ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDV-KG-QVVFAKLKTLDLSSNK-LAFM 206 (317)
T ss_dssp -CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEE-EC-CCCCTTCCEEECCSSC-CCEE
T ss_pred -CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccc-cc-ccccccCCEEECCCCc-CCcc
Confidence 22221100 00 00134555555555543 2222 11 2335666666666653 4444
Q ss_pred cchhhHhcCCCCcEEeeeccccccccccccccccccccccCCccceeecCCCCCC
Q 044237 139 VTSSTAKTLVQLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLDSL 193 (212)
Q Consensus 139 ~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~L 193 (212)
.+ ....+++|++|+++++. +..+.. ....+++|+.|++.+++--
T Consensus 207 ~~--~~~~l~~L~~L~L~~N~-l~~l~~--------~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 207 GP--EFQSAAGVTWISLRNNK-LVLIEK--------ALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CG--GGGGGTTCSEEECTTSC-CCEECT--------TCCCCTTCCEEECTTCCCB
T ss_pred hh--hhcccCcccEEECcCCc-ccchhh--------HhhcCCCCCEEEccCCCcc
Confidence 32 24566777777777763 333321 1225789999999887654
No 66
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.94 E-value=1.6e-08 Score=91.56 Aligned_cols=62 Identities=11% Similarity=-0.020 Sum_probs=34.6
Q ss_pred cCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecccc
Q 044237 96 FQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRA 160 (212)
Q Consensus 96 l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~ 160 (212)
+++|+.|+++++. +....|..+..+++|+.|+++++. +....+ ...+.+++|+.|+++++.-
T Consensus 631 l~~L~~LdLs~N~-l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~ip-~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 631 NGSMMFLDMSYNM-LSGYIPKEIGSMPYLFILNLGHND-ISGSIP-DEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp SBCCCEEECCSSC-CBSCCCGGGGGCTTCCEEECCSSC-CCSCCC-GGGGGCTTCCEEECCSSCC
T ss_pred cccccEEECcCCc-ccccCCHHHhccccCCEEeCcCCc-cCCCCC-hHHhCCCCCCEEECCCCcc
Confidence 4566667776653 333334445666677777776654 222222 2345666677777766543
No 67
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.93 E-value=5.3e-09 Score=84.86 Aligned_cols=39 Identities=18% Similarity=0.134 Sum_probs=28.6
Q ss_pred ccCCccEEEEc-CCCCc-eechHHHHhhcCCCcEEEEeecCCcc
Q 044237 11 LFGSLKQLNIG-GDDSA-CFPIWNVLERFHSLEILILCYFSFHE 52 (212)
Q Consensus 11 ~l~~Lk~L~l~-~~~~~-~~p~~~~~~~l~~L~~L~i~~C~~l~ 52 (212)
.+++|++|+++ ++... .+|.. ++.+++|++|+++++ .+.
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~--l~~l~~L~~L~Ls~n-~l~ 114 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPA--IAKLTQLHYLYITHT-NVS 114 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGG--GGGCTTCSEEEEEEE-CCE
T ss_pred CCCCCCeeeCCCCCcccccCChh--HhcCCCCCEEECcCC-eeC
Confidence 48889999998 34443 56654 468899999999886 554
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.93 E-value=1.2e-08 Score=80.95 Aligned_cols=115 Identities=17% Similarity=0.073 Sum_probs=77.7
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
.+++|++|+++++.+..++.. .++.+++|++|+++++ .++.+... ....+++|++|.+.++. +..+..
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~------~~~~l~~L~~L~l~~n~-l~~~~~--- 117 (276)
T 2z62_A 50 SFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGN-PIQSLALG------AFSGLSSLQKLVAVETN-LASLEN--- 117 (276)
T ss_dssp TCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTC-CCCEECTT------TTTTCTTCCEEECTTSC-CCCSTT---
T ss_pred cccCCcEEECCCCcCCccCHH-HccCCcCCCEEECCCC-ccCccChh------hhcCCccccEEECCCCC-ccccCc---
Confidence 478999999996667777765 4568999999999985 56655431 12357889999988763 444321
Q ss_pred ccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCcee
Q 044237 91 KLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHL 138 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l 138 (212)
.....+++|++|+++++.--..-.|.....+++|++|+++++. ++.+
T Consensus 118 ~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~ 164 (276)
T 2z62_A 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSI 164 (276)
T ss_dssp CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEE
T ss_pred hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcC
Confidence 1235678888888888643221124446678888888888874 4444
No 69
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.93 E-value=6.2e-09 Score=91.97 Aligned_cols=145 Identities=15% Similarity=0.143 Sum_probs=82.2
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
.+++|+.|++..+.+..+|. ++.+++|+.|++++| .+..+.+ ...+++|+.|.++++ ++..+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~---l~~l~~L~~L~Ls~N-~l~~~~~--------l~~l~~L~~L~Ls~N-~l~~l~---- 103 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGN-KLTDIKP--------LTNLKNLGWLFLDEN-KIKDLS---- 103 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTT---GGGCTTCCEEECTTS-CCCCCGG--------GGGCTTCCEEECCSS-CCCCCT----
T ss_pred cCCCCCEEECcCCCCCCChH---HccCCCCCEEEeeCC-CCCCChh--------hccCCCCCEEECcCC-CCCCCh----
Confidence 46677777777444555542 246777777777765 4444332 124667777777765 344331
Q ss_pred ccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecccccccccccccc
Q 044237 91 KLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDKE 170 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 170 (212)
....+++|+.|++++|. +..+ +. +..+++|+.|++++|. +..+ .....+++|+.|++++|. +..+..
T Consensus 104 -~l~~l~~L~~L~Ls~N~-l~~l-~~-l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~---- 170 (605)
T 1m9s_A 104 -SLKDLKKLKSLSLEHNG-ISDI-NG-LVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---- 170 (605)
T ss_dssp -TSTTCTTCCEEECTTSC-CCCC-GG-GGGCTTCSEEECCSSC-CCCC---GGGGSCTTCSEEECCSSC-CCCCGG----
T ss_pred -hhccCCCCCEEEecCCC-CCCC-cc-ccCCCccCEEECCCCc-cCCc---hhhcccCCCCEEECcCCc-CCCchh----
Confidence 22456677777777663 3332 22 5566777777777663 3333 235566777777777663 222211
Q ss_pred ccccccccCCccceeecCCC
Q 044237 171 GVEKEEIVFRKLKMLELRDL 190 (212)
Q Consensus 171 ~~~~~~~~~p~L~~L~l~~c 190 (212)
...+++|+.|.+.++
T Consensus 171 -----l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 171 -----LAGLTKLQNLYLSKN 185 (605)
T ss_dssp -----GTTCTTCCEEECCSS
T ss_pred -----hccCCCCCEEECcCC
Confidence 124566777766654
No 70
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.92 E-value=9.3e-09 Score=83.84 Aligned_cols=112 Identities=15% Similarity=0.161 Sum_probs=59.9
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+|...+++|++|+++++.+..++.. .++.+++|++|++++| .++.+.+. ....+++|++|++++. +++.+
T Consensus 47 ~ip~~~~~~l~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~------~~~~l~~L~~L~L~~n-~l~~l 117 (332)
T 2ft3_A 47 AVPKEISPDTTLLDLQNNDISELRKD-DFKGLQHLYALVLVNN-KISKIHEK------AFSPLRKLQKLYISKN-HLVEI 117 (332)
T ss_dssp SCCSCCCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSS-CCCEECGG------GSTTCTTCCEEECCSS-CCCSC
T ss_pred ccCCCCCCCCeEEECCCCcCCccCHh-HhhCCCCCcEEECCCC-ccCccCHh------HhhCcCCCCEEECCCC-cCCcc
Confidence 34444556777777774445555443 3456777777777764 45544321 1124667777777664 24433
Q ss_pred cccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCC
Q 044237 86 CKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCK 133 (212)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~ 133 (212)
.. ..+++|++|+++++. ++.+.+.....+++|+.|+++++.
T Consensus 118 ~~------~~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 118 PP------NLPSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp CS------SCCTTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCC
T ss_pred Cc------cccccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCc
Confidence 21 112566666666653 333333223456666666666653
No 71
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.92 E-value=7.3e-09 Score=87.73 Aligned_cols=141 Identities=13% Similarity=0.071 Sum_probs=93.8
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+|. ..++|++|+++++.+..++.. .++.+++|++|++++|.-...+.+. ....+++|++|+++++. ++.+
T Consensus 24 ~lp~-l~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~~~------~~~~l~~L~~L~Ls~n~-l~~~ 94 (455)
T 3v47_A 24 QVPE-LPAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQTPGLVIRNN------TFRGLSSLIILKLDYNQ-FLQL 94 (455)
T ss_dssp SCCC-CCTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCSTTCEECTT------TTTTCTTCCEEECTTCT-TCEE
T ss_pred cCCC-CCCccCEEEecCCccCcCChh-HhccCccccEEECcCCcccceECcc------cccccccCCEEeCCCCc-cCcc
Confidence 3444 457899999996666666444 4569999999999997443333321 12357899999999864 4433
Q ss_pred cccCCccCCCcCcccEEEEecCcccccc-CCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccc
Q 044237 86 CKQDSKLGPIFQYLEILKVYDCQSLLIL-LPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECR 159 (212)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l-~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 159 (212)
. +.....+++|++|++++|.--... .......+++|++|+++++. +..+.+......+++|++|++.++.
T Consensus 95 ~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 95 E---TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp C---TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred C---hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCc
Confidence 1 223356889999999988532211 11124567889999998875 4444343346778899999998875
No 72
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.92 E-value=4.6e-09 Score=91.33 Aligned_cols=166 Identities=18% Similarity=0.038 Sum_probs=109.1
Q ss_pred ccccCCccEEEEcCCCCcee---chHHHHhhcCCCcEEEEeecCCcceeccccc-c-----------c-----c-ccccc
Q 044237 9 QHLFGSLKQLNIGGDDSACF---PIWNVLERFHSLEILILCYFSFHEEVFSMEG-C-----------L-----E-KHVGK 67 (212)
Q Consensus 9 ~~~l~~Lk~L~l~~~~~~~~---p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~-~-----------~-----~-~~~~~ 67 (212)
...+++|++|+++.+..... |. ....+++|++|++++| .+..+++..+ + . . .....
T Consensus 343 ~~~~~~L~~L~l~~n~l~~~~~~~~--~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 343 EVDLPSLEFLDLSRNGLSFKGCCSQ--SDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp CCBCTTCCEEECCSSCCBEEEEEEH--HHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred cccCCCCCEEeCcCCccCccccccc--cccccCccCEEECCCC-ccccccccccccCCCCEEEccCCccccccchhhhhc
Confidence 35789999999995555544 34 3458999999999886 4444332110 0 0 0 01224
Q ss_pred cccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcC
Q 044237 68 LAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTL 147 (212)
Q Consensus 68 l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l 147 (212)
+++|++|+++++. +... .+.....+++|++|++++|.-.....|.....+++|++|++++|. ++.+.+ .....+
T Consensus 420 l~~L~~L~l~~n~-l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l 493 (570)
T 2z63_A 420 LRNLIYLDISHTH-TRVA---FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP-TAFNSL 493 (570)
T ss_dssp CTTCCEEECTTSC-CEEC---CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT-TTTTTC
T ss_pred CCCCCEEeCcCCc-cccc---chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCCh-hhhhcc
Confidence 5677777777763 2221 122235689999999999975433345557789999999999985 555533 345688
Q ss_pred CCCcEEeeeccccccccccccccccccccccCCccceeecCCCC
Q 044237 148 VQLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLD 191 (212)
Q Consensus 148 ~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp 191 (212)
++|++|++++|. +..++... ...+++|+.|++.++|
T Consensus 494 ~~L~~L~l~~n~-l~~~~~~~-------~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 494 SSLQVLNMASNQ-LKSVPDGI-------FDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCCEEECCSSC-CSCCCTTT-------TTTCTTCCEEECCSSC
T ss_pred cCCCEEeCCCCc-CCCCCHHH-------hhcccCCcEEEecCCc
Confidence 999999999984 44443211 2357899999999865
No 73
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.92 E-value=1.2e-08 Score=82.81 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=39.1
Q ss_pred CCccEEEEcCCCCc---eechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcc
Q 044237 13 GSLKQLNIGGDDSA---CFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQH 79 (212)
Q Consensus 13 ~~Lk~L~l~~~~~~---~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~ 79 (212)
.++++|+++++.+. .+|.. ++.+++|++|+++++.++...++.. ...+++|++|+++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~--l~~l~~L~~L~L~~~n~l~~~~p~~------l~~l~~L~~L~Ls~n 111 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS--LANLPYLNFLYIGGINNLVGPIPPA------IAKLTQLHYLYITHT 111 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG--GGGCTTCSEEEEEEETTEESCCCGG------GGGCTTCSEEEEEEE
T ss_pred ceEEEEECCCCCccCCcccChh--HhCCCCCCeeeCCCCCcccccCChh------HhcCCCCCEEECcCC
Confidence 68999999944444 67764 5699999999999766666433211 124566666666553
No 74
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.91 E-value=2.1e-09 Score=98.56 Aligned_cols=139 Identities=12% Similarity=0.023 Sum_probs=72.3
Q ss_pred CCcc--ccCCccEEEEcCCCCce------------------echHHH-HhhcCCCcEEEEeecCCcceeccccccccccc
Q 044237 7 FPQH--LFGSLKQLNIGGDDSAC------------------FPIWNV-LERFHSLEILILCYFSFHEEVFSMEGCLEKHV 65 (212)
Q Consensus 7 ~p~~--~l~~Lk~L~l~~~~~~~------------------~p~~~~-~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~ 65 (212)
+|.. .+++|++|+++.+.++. +|.. + +.++++|++|++++|.-...++...
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l------- 511 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCPNMTQLPDFL------- 511 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESCTTCCSCCGGG-------
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCCCCCccChHHH-------
Confidence 5543 47888888888544554 6654 2 2278888888888875444443322
Q ss_pred cccccccEEecCccccccc--ccccCC---ccCCCcCcccEEEEecCccccccCCC--CcccCCCCCeEEEcCCCCCcee
Q 044237 66 GKLAMIKELQLHQHYHLEQ--LCKQDS---KLGPIFQYLEILKVYDCQSLLILLPS--SSVSFRNLTEIVAFGCKELIHL 138 (212)
Q Consensus 66 ~~l~~L~~L~l~~~~~L~~--l~~~~~---~~~~~l~~L~~L~i~~C~~L~~l~~~--~~~~l~~L~~L~i~~C~~L~~l 138 (212)
..+++|+.|.++++..++. ++..-. +....+++|+.|+++++.- ..+ |. .+..+++|+.|+++++. +..+
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L-~~i-p~~~~l~~L~~L~~L~Ls~N~-l~~l 588 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL-EEF-PASASLQKMVKLGLLDCVHNK-VRHL 588 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC-CBC-CCHHHHTTCTTCCEEECTTSC-CCBC
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC-Ccc-CChhhhhcCCCCCEEECCCCC-cccc
Confidence 2567777777776643332 211000 0112344566666665532 232 22 24455556666655543 2222
Q ss_pred cchhhHhcCCCCcEEeeeccc
Q 044237 139 VTSSTAKTLVQLVTVRMRECR 159 (212)
Q Consensus 139 ~~~~~~~~l~~L~~L~i~~c~ 159 (212)
+ ....+++|+.|+++++.
T Consensus 589 p---~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 589 E---AFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp C---CCCTTSEESEEECCSSC
T ss_pred h---hhcCCCcceEEECcCCc
Confidence 1 23444555555555543
No 75
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.91 E-value=1.3e-08 Score=86.80 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=30.4
Q ss_pred ccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCccee
Q 044237 9 QHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEV 54 (212)
Q Consensus 9 ~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i 54 (212)
...+++|++|+++++....++. +..+++|++|++++| .+..+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n-~l~~~ 214 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDISV---LAKLTNLESLIATNN-QISDI 214 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECCSS-CCCCC
T ss_pred hccCCCCCEEECcCCcCCCChh---hccCCCCCEEEecCC-ccccc
Confidence 4568899999999555555543 358999999999886 44443
No 76
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.90 E-value=7.1e-09 Score=81.34 Aligned_cols=134 Identities=16% Similarity=0.089 Sum_probs=99.7
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
.+++|++|+++.+.+..++.. .++.+++|++|+++++ .++.+++. ....+++|++|++++. +++.+..
T Consensus 57 ~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~------~~~~l~~L~~L~L~~N-~l~~~~~--- 124 (251)
T 3m19_A 57 GLTKLTWLNLDYNQLQTLSAG-VFDDLTELGTLGLANN-QLASLPLG------VFDHLTQLDKLYLGGN-QLKSLPS--- 124 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTS-CCCCCCTT------TTTTCTTCCEEECCSS-CCCCCCT---
T ss_pred CcccCCEEECCCCcCCccCHh-HhccCCcCCEEECCCC-cccccChh------HhcccCCCCEEEcCCC-cCCCcCh---
Confidence 478999999996666666655 5568999999999985 66654432 1236899999999986 5665532
Q ss_pred ccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccc
Q 044237 91 KLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECR 159 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 159 (212)
.....+++|++|+++++ .++.+.+.....+++|++|+++++. ++.+.+ .....+++|+.|++.+++
T Consensus 125 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 125 GVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPH-GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred hHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCc-CCccCH-HHHhCCCCCCEEEeeCCc
Confidence 22356899999999997 5666655446678999999999874 555533 345678999999999865
No 77
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.89 E-value=5.7e-09 Score=76.77 Aligned_cols=112 Identities=19% Similarity=0.158 Sum_probs=51.5
Q ss_pred ccccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhc
Q 044237 67 KLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKT 146 (212)
Q Consensus 67 ~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~ 146 (212)
.+++|++|+++++. ++.+ .....+++|++|+++++. +...+|.....+++|++|++++| +++.+........
T Consensus 47 ~l~~L~~L~l~~n~-l~~~-----~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~ 118 (168)
T 2ell_A 47 EFVNLEFLSLINVG-LISV-----SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKK 118 (168)
T ss_dssp GGGGCCEEEEESSC-CCCC-----SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSS
T ss_pred hCCCCCEEeCcCCC-CCCh-----hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhc
Confidence 34555555555543 3332 112345556666666553 22222331233666666666665 3444322123455
Q ss_pred CCCCcEEeeeccccccccccccccccccccccCCccceeecCCCC
Q 044237 147 LVQLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLD 191 (212)
Q Consensus 147 l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp 191 (212)
+++|+.|++.++.- ..+..... .....+|+|+.|++.+++
T Consensus 119 l~~L~~L~l~~N~l-~~~~~~~~----~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 119 LECLKSLDLFNCEV-TNLNDYRE----SVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CSCCCEEECCSSGG-GTSTTHHH----HHHTTCSSCCEETTEETT
T ss_pred CCCCCEEEeeCCcC-cchHHHHH----HHHHhCccCcEecCCCCC
Confidence 66666666666532 22111000 001245666666666664
No 78
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.88 E-value=7.2e-09 Score=93.84 Aligned_cols=111 Identities=16% Similarity=0.045 Sum_probs=61.8
Q ss_pred ccccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhc
Q 044237 67 KLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKT 146 (212)
Q Consensus 67 ~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~ 146 (212)
.+++|++|.++++.--..+ +.....+++|++|++++|.--.. .|.....+++|++|++++|.-...+ + .....
T Consensus 440 ~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~-p-~~~~~ 512 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEI----PQELMYVKTLETLILDFNDLTGE-IPSGLSNCTNLNWISLSNNRLTGEI-P-KWIGR 512 (768)
T ss_dssp GCTTCCEEECCSSCCCSCC----CGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCCSCC-C-GGGGG
T ss_pred cCCCCCEEECCCCcccCcC----CHHHcCCCCceEEEecCCcccCc-CCHHHhcCCCCCEEEccCCccCCcC-C-hHHhc
Confidence 4556666666665311121 11223566777777777643322 3444566777777777777532222 2 24556
Q ss_pred CCCCcEEeeeccccccccccccccccccccccCCccceeecCCCCC
Q 044237 147 LVQLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLDS 192 (212)
Q Consensus 147 l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~ 192 (212)
+++|++|++++|.-...++. ....+++|+.|++.+++-
T Consensus 513 l~~L~~L~L~~N~l~~~~p~--------~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPA--------ELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CTTCCEEECCSSCCEEECCG--------GGGGCTTCCEEECCSSEE
T ss_pred CCCCCEEECCCCcccCcCCH--------HHcCCCCCCEEECCCCcc
Confidence 77777777777754323221 122577888888877653
No 79
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.87 E-value=1.7e-08 Score=77.75 Aligned_cols=139 Identities=12% Similarity=0.161 Sum_probs=97.5
Q ss_pred CCCccccCCccEEEEcCCCCcee-chHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACF-PIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQ 84 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~-p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~ 84 (212)
.+|......+++|+++.+.+..+ |.. .++.+++|++|+++++ .++.+.+. ....+++|++|++++. +++.
T Consensus 25 ~iP~~~~~~~~~L~L~~N~l~~~~~~~-~~~~l~~L~~L~L~~N-~i~~i~~~------~~~~l~~L~~L~Ls~N-~l~~ 95 (220)
T 2v70_A 25 KIPEHIPQYTAELRLNNNEFTVLEATG-IFKKLPQLRKINFSNN-KITDIEEG------AFEGASGVNEILLTSN-RLEN 95 (220)
T ss_dssp SCCSCCCTTCSEEECCSSCCCEECCCC-CGGGCTTCCEEECCSS-CCCEECTT------TTTTCTTCCEEECCSS-CCCC
T ss_pred cCccCCCCCCCEEEcCCCcCCccCchh-hhccCCCCCEEECCCC-cCCEECHH------HhCCCCCCCEEECCCC-ccCc
Confidence 46666677889999996666666 333 4568999999999884 67766542 1235789999999885 3454
Q ss_pred ccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccc
Q 044237 85 LCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECR 159 (212)
Q Consensus 85 l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 159 (212)
+.. .....+++|++|+++++. ++.+.+.....+++|+.|+++++. ++.+.+ .....+++|++|++.+.+
T Consensus 96 ~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 96 VQH---KMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAP-GAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCG---GGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSC-CCCBCT-TTTTTCTTCCEEECCSCC
T ss_pred cCH---hHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCc-CCEECH-HHhcCCCCCCEEEecCcC
Confidence 422 223567899999999864 555555556778899999998864 555533 345678899999988764
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.86 E-value=3.6e-09 Score=85.75 Aligned_cols=139 Identities=17% Similarity=0.089 Sum_probs=61.3
Q ss_pred cCCccEEEEc-CCCCceechHHH-HhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccC
Q 044237 12 FGSLKQLNIG-GDDSACFPIWNV-LERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQD 89 (212)
Q Consensus 12 l~~Lk~L~l~-~~~~~~~p~~~~-~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~ 89 (212)
+++|++|+++ +.....+|.. + .+.+++|++|+++++ .++.++...+ ......+++|++|++++.. +..+.
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~--~l~~~~~~~L~~L~L~~N~-l~~~~--- 165 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPP-LLEATGPDLNILNLRNV-SWATRDAWLA--ELQQWLKPGLKVLSIAQAH-SLNFS--- 165 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCC-SSSCCSCCCSEEEEESC-BCSSSSSHHH--HHHTTCCTTCCEEEEESCS-CCCCC---
T ss_pred cCCccEEEccCCcccchhHHH-HHHhcCCCccEEEccCC-CCcchhHHHH--HHHHhhcCCCcEEEeeCCC-Cccch---
Confidence 5566666666 3222244443 2 145666666666663 3443321100 0000012566666666542 33321
Q ss_pred CccCCCcCcccEEEEecCccccc--cCCC-CcccCCCCCeEEEcCCCCCceec--chhhHhcCCCCcEEeeeccc
Q 044237 90 SKLGPIFQYLEILKVYDCQSLLI--LLPS-SSVSFRNLTEIVAFGCKELIHLV--TSSTAKTLVQLVTVRMRECR 159 (212)
Q Consensus 90 ~~~~~~l~~L~~L~i~~C~~L~~--l~~~-~~~~l~~L~~L~i~~C~~L~~l~--~~~~~~~l~~L~~L~i~~c~ 159 (212)
+.....+++|++|+++++.-... +++. ....+++|++|++++|. ++.+. .......+++|++|+++++.
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc
Confidence 11223456666666666542221 0011 01345666666666653 33211 11122345666666666553
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.85 E-value=5.7e-09 Score=84.53 Aligned_cols=176 Identities=16% Similarity=0.116 Sum_probs=109.9
Q ss_pred cccCCccEEEEcCCCCceechHHHHhhc-----CCCcEEEEeecCCcceeccccccccccccccccccEEecCccccccc
Q 044237 10 HLFGSLKQLNIGGDDSACFPIWNVLERF-----HSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQ 84 (212)
Q Consensus 10 ~~l~~Lk~L~l~~~~~~~~p~~~~~~~l-----~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~ 84 (212)
..+++|++|+++.+.+...|.. ++.+ ++|++|+++++ .+..+.+. ....+++|++|++++..-...
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~--~~~l~~~~~~~L~~L~L~~N-~l~~~~~~------~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAW--LAELQQWLKPGLKVLSIAQA-HSLNFSCE------QVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSH--HHHHHTTCCTTCCEEEEESC-SCCCCCTT------TCCCCSSCCEEECCSCTTCHH
T ss_pred hcCCCccEEEccCCCCcchhHH--HHHHHHhhcCCCcEEEeeCC-CCccchHH------HhccCCCCCEEECCCCCcCcc
Confidence 4588999999996666666654 4466 99999999996 56554421 123688999999998753222
Q ss_pred ccccCCccCCCcCcccEEEEecCccccc---cCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccc
Q 044237 85 LCKQDSKLGPIFQYLEILKVYDCQSLLI---LLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAM 161 (212)
Q Consensus 85 l~~~~~~~~~~l~~L~~L~i~~C~~L~~---l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l 161 (212)
+..........+++|++|+++++. ++. +.......+++|++|+++++. ++...+......+++|++|+++++. +
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~-l 265 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTG-L 265 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSC-C
T ss_pred hHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCc-c
Confidence 110000011467899999999884 332 111112356899999999875 4443322234557899999999875 3
Q ss_pred cccccccccccccccccCCccceeecCCCCCCceecCCCccccCCCCccC
Q 044237 162 TEVVINDKEGVEKEEIVFRKLKMLELRDLDSLTSFCSANYTFKFPSLQDL 211 (212)
Q Consensus 162 ~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~L~~~~~~~~~~~~p~L~~l 211 (212)
..+.. ..+++|++|++.+. .++.++. ...+|+|++|
T Consensus 266 ~~ip~----------~~~~~L~~L~Ls~N-~l~~~p~---~~~l~~L~~L 301 (312)
T 1wwl_A 266 KQVPK----------GLPAKLSVLDLSYN-RLDRNPS---PDELPQVGNL 301 (312)
T ss_dssp SSCCS----------SCCSEEEEEECCSS-CCCSCCC---TTTSCEEEEE
T ss_pred Chhhh----------hccCCceEEECCCC-CCCCChh---HhhCCCCCEE
Confidence 33321 12378888888876 4555532 2235666554
No 82
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.85 E-value=6.5e-08 Score=83.35 Aligned_cols=135 Identities=14% Similarity=0.004 Sum_probs=99.8
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+|....++|++|+++++.+..++.. .++.+++|++|+++++ .++.+.+. ....+++|++|++++. +++.+
T Consensus 14 ~ip~~~~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~------~~~~l~~L~~L~Ls~N-~l~~l 84 (520)
T 2z7x_B 14 HVPKDLSQKTTILNISQNYISELWTS-DILSLSKLRILIISHN-RIQYLDIS------VFKFNQELEYLDLSHN-KLVKI 84 (520)
T ss_dssp SCCCSCCTTCSEEECCSSCCCCCCHH-HHTTCTTCCEEECCSS-CCCEEEGG------GGTTCTTCCEEECCSS-CCCEE
T ss_pred cccccccccccEEECCCCcccccChh-hccccccccEEecCCC-ccCCcChH------HhhcccCCCEEecCCC-ceeec
Confidence 46666679999999996667777665 5679999999999996 66665432 1236899999999987 56666
Q ss_pred cccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCC--cEEeeecccc
Q 044237 86 CKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQL--VTVRMRECRA 160 (212)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L--~~L~i~~c~~ 160 (212)
+.. .+++|++|+++++.--..-.|.....+++|++|+++++. +.. .....+++| ++|++.++.-
T Consensus 85 p~~------~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~----~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 85 SCH------PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK----SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp ECC------CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG----GGGGGGTTSCEEEEEEEECTT
T ss_pred Ccc------ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch----hhccccccceeeEEEeecccc
Confidence 322 689999999999864331234447789999999999875 332 235567778 9999998864
No 83
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.84 E-value=7e-09 Score=76.31 Aligned_cols=134 Identities=20% Similarity=0.153 Sum_probs=96.0
Q ss_pred cccCCccEEEEcCCCCc--eechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccc
Q 044237 10 HLFGSLKQLNIGGDDSA--CFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCK 87 (212)
Q Consensus 10 ~~l~~Lk~L~l~~~~~~--~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~ 87 (212)
...++|++|+++++.+. .+|.. ++.+++|++|++++| .++.+ .. ...+++|++|+++++. ++..
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~--~~~l~~L~~L~l~~n-~l~~~-~~-------~~~l~~L~~L~Ls~N~-l~~~-- 86 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGL--TAEFVNLEFLSLINV-GLISV-SN-------LPKLPKLKKLELSENR-IFGG-- 86 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSC--CGGGGGCCEEEEESS-CCCCC-SS-------CCCCSSCCEEEEESCC-CCSC--
T ss_pred CCcccCCEEECCCCCCChhhHHHH--HHhCCCCCEEeCcCC-CCCCh-hh-------hccCCCCCEEECcCCc-CchH--
Confidence 34689999999955565 77764 458999999999997 46654 21 2368999999999874 4431
Q ss_pred cCCccCCCcCcccEEEEecCccccccCC-CCcccCCCCCeEEEcCCCCCceecc--hhhHhcCCCCcEEeeecccc
Q 044237 88 QDSKLGPIFQYLEILKVYDCQSLLILLP-SSSVSFRNLTEIVAFGCKELIHLVT--SSTAKTLVQLVTVRMRECRA 160 (212)
Q Consensus 88 ~~~~~~~~l~~L~~L~i~~C~~L~~l~~-~~~~~l~~L~~L~i~~C~~L~~l~~--~~~~~~l~~L~~L~i~~c~~ 160 (212)
.+.....+++|+.|+++++ .++.+.. .....+++|+.|+++++. +..+.. ......+++|++|++.+|..
T Consensus 87 -~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 87 -LDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp -CCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred -HHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 1122235889999999998 4555421 336678999999999985 444422 12567899999999999865
No 84
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.83 E-value=3.3e-08 Score=90.66 Aligned_cols=163 Identities=11% Similarity=0.124 Sum_probs=103.8
Q ss_pred CCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceecccccc-ccccccccccccEEecCcccccccccccCCc
Q 044237 13 GSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGC-LEKHVGKLAMIKELQLHQHYHLEQLCKQDSK 91 (212)
Q Consensus 13 ~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~-~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~ 91 (212)
++|++|+++.+.+..+|.+ ....+++|++|+++++ .+..++..... .......+++|++|+++++ +++.++...
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~-~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l-- 747 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTE-LFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDF-- 747 (876)
T ss_dssp CCEEEEECCSSCCCSCCHH-HHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGG--
T ss_pred CCcCEEEccCCcCCccCHH-HHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHh--
Confidence 4788888886666677876 6667888888888875 56554432110 0000123458889998887 566553211
Q ss_pred cCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCC-----CCceecchhhHhcCCCCcEEeeecccccccccc
Q 044237 92 LGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCK-----ELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVI 166 (212)
Q Consensus 92 ~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~-----~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~ 166 (212)
....+++|+.|+++++. +..+ |.....+++|+.|+++++. ++....+ .....+++|+.|++++|.- ..++.
T Consensus 748 ~~~~l~~L~~L~Ls~N~-L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip-~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 748 RATTLPYLSNMDVSYNC-FSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWP-TGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp STTTCTTCCEEECCSSC-CSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred hhccCCCcCEEEeCCCC-CCcc-chhhhcCCCCCEEECCCCCCcccccccccCh-HHHhcCCCCCEEECCCCCC-CccCH
Confidence 00267889999998873 4444 5447788899999987633 2222222 3456788899999988864 44432
Q ss_pred ccccccccccccCCccceeecCCCCCCc
Q 044237 167 NDKEGVEKEEIVFRKLKMLELRDLDSLT 194 (212)
Q Consensus 167 ~~~~~~~~~~~~~p~L~~L~l~~cp~L~ 194 (212)
..+++|+.|+++++|-..
T Consensus 824 ----------~l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 824 ----------KLTPQLYILDIADNPNIS 841 (876)
T ss_dssp ----------CCCSSSCEEECCSCTTCE
T ss_pred ----------hhcCCCCEEECCCCCCCc
Confidence 134789999998887533
No 85
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.83 E-value=1.9e-08 Score=86.68 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=17.6
Q ss_pred cCCccceeecCCCCCCceecCCCccccCCCCccC
Q 044237 178 VFRKLKMLELRDLDSLTSFCSANYTFKFPSLQDL 211 (212)
Q Consensus 178 ~~p~L~~L~l~~cp~L~~~~~~~~~~~~p~L~~l 211 (212)
.+++|++|++.++ .++.++.+. -..+++|++|
T Consensus 442 ~l~~L~~L~L~~N-~l~~l~~~~-~~~l~~L~~L 473 (520)
T 2z7x_B 442 KLEALQELNVASN-QLKSVPDGI-FDRLTSLQKI 473 (520)
T ss_dssp GCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEE
T ss_pred cCCCCCEEECCCC-cCCccCHHH-hccCCcccEE
Confidence 5677777777776 455555431 1224555543
No 86
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.82 E-value=6.1e-10 Score=97.39 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=9.7
Q ss_pred cCCccceeecCCCC
Q 044237 178 VFRKLKMLELRDLD 191 (212)
Q Consensus 178 ~~p~L~~L~l~~cp 191 (212)
.+++|++|.+.+|+
T Consensus 511 ~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 511 KLPSLRYLWVQGYR 524 (592)
T ss_dssp HCSSCCEEEEESCB
T ss_pred hcCccCeeECcCCc
Confidence 46677777777776
No 87
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.82 E-value=2.2e-08 Score=82.77 Aligned_cols=139 Identities=17% Similarity=0.190 Sum_probs=98.0
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHh-hcCCCcEEEEeecCCcceeccccccccccccccccccEEecCccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLE-RFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQ 84 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~-~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~ 84 (212)
.+|.+...+++.|+++.+.+..++.. .+. .+++|++|+++++ .++.+.+. ....+++|++|++++. +++.
T Consensus 32 ~iP~~~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N-~i~~i~~~------~~~~l~~L~~L~Ls~N-~l~~ 102 (361)
T 2xot_A 32 NVPQSLPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHN-HLNFISSE------AFVPVPNLRYLDLSSN-HLHT 102 (361)
T ss_dssp SCCSSCCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSS-CCCEECTT------TTTTCTTCCEEECCSS-CCCE
T ss_pred ccCccCCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCC-cCCccChh------hccCCCCCCEEECCCC-cCCc
Confidence 46666777899999997777777765 444 8899999999884 77766542 1236789999999985 3666
Q ss_pred ccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhH---hcCCCCcEEeeeccc
Q 044237 85 LCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTA---KTLVQLVTVRMRECR 159 (212)
Q Consensus 85 l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~---~~l~~L~~L~i~~c~ 159 (212)
+.. .....+++|+.|+++++. +..+.+.....+++|+.|+++++. ++.+.. ... ..+++|+.|++++..
T Consensus 103 ~~~---~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~-~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 103 LDE---FLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPV-ELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp ECT---TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCG-GGTC----CTTCCEEECCSSC
T ss_pred CCH---HHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCc-CCeeCH-HHhcCcccCCcCCEEECCCCC
Confidence 532 223567899999999874 445545546778999999998874 555433 222 468899999998863
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.79 E-value=3.7e-08 Score=84.73 Aligned_cols=165 Identities=13% Similarity=0.014 Sum_probs=96.0
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceecccccc----------ccccccccccccEEecCccc
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGC----------LEKHVGKLAMIKELQLHQHY 80 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~----------~~~~~~~l~~L~~L~l~~~~ 80 (212)
.+++|++|+++++.+...++ ++.+++|++|++++| .++.++....+ .......+++|+.|+++++.
T Consensus 56 ~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N-~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~ 131 (487)
T 3oja_A 56 PFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNN-YVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK 131 (487)
T ss_dssp TCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSS-EEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSC
T ss_pred CCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCC-cCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCC
Confidence 58899999999555543332 248999999999986 66655432110 00112246777888777653
Q ss_pred ccccccccCCccCCCcCcccEEEEecCccccccCCCCcc-cCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccc
Q 044237 81 HLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSV-SFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECR 159 (212)
Q Consensus 81 ~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~-~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 159 (212)
+..+.. .....+++|+.|+++++. +....|.... .+++|+.|++++|. +..+.. ...+++|+.|+++++.
T Consensus 132 -l~~~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~---~~~l~~L~~L~Ls~N~ 202 (487)
T 3oja_A 132 -ITMLRD---LDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDVKG---QVVFAKLKTLDLSSNK 202 (487)
T ss_dssp -CCSGGG---BCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC---CCCCTTCCEEECCSSC
T ss_pred -CCCCCc---hhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCc-cccccc---cccCCCCCEEECCCCC
Confidence 333311 122457788888888763 3333333233 57788888888775 444422 2346778888887764
Q ss_pred cccccccccccccccccccCCccceeecCCCCCCceecC
Q 044237 160 AMTEVVINDKEGVEKEEIVFRKLKMLELRDLDSLTSFCS 198 (212)
Q Consensus 160 ~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~L~~~~~ 198 (212)
+..++.. ...+++|+.|++.++ .++.++.
T Consensus 203 -l~~~~~~--------~~~l~~L~~L~Ls~N-~l~~lp~ 231 (487)
T 3oja_A 203 -LAFMGPE--------FQSAAGVTWISLRNN-KLVLIEK 231 (487)
T ss_dssp -CCEECGG--------GGGGTTCSEEECTTS-CCCEECT
T ss_pred -CCCCCHh--------HcCCCCccEEEecCC-cCcccch
Confidence 3333221 124567777777664 3444544
No 89
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.79 E-value=8.1e-08 Score=85.40 Aligned_cols=135 Identities=14% Similarity=0.103 Sum_probs=95.0
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
.+++|++|+++++.+..++.. .++.+++|++|++++| .++.+++. ....+++|++|+++++ +++.+..
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~l~~~------~~~~l~~L~~L~L~~n-~l~~~~~--- 114 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHN-ELSQLSDK------TFAFCTNLTELHLMSN-SIQKIKN--- 114 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTT-HHHHCTTCCEEECCSS-CCCCCCTT------TTTTCTTCSEEECCSS-CCCCCCS---
T ss_pred CCCcCcEEECCCCccCccCHH-HHhcccCcCEEECCCC-ccCccChh------hhccCCCCCEEECCCC-ccCccCh---
Confidence 478999999995555555555 5679999999999986 66655442 1236889999999987 3555422
Q ss_pred ccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhh-HhcCCCCcEEeeeccc
Q 044237 91 KLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSST-AKTLVQLVTVRMRECR 159 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~-~~~l~~L~~L~i~~c~ 159 (212)
.....+++|++|+++++. +....+.....+++|++|+++++. ++.+.+... ...+++|++|++.++.
T Consensus 115 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 115 NPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred hHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCc
Confidence 223578999999999984 344445446678999999999875 444432221 1245889999998873
No 90
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.78 E-value=8.1e-08 Score=73.00 Aligned_cols=149 Identities=16% Similarity=0.062 Sum_probs=102.7
Q ss_pred cEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCccCCC
Q 044237 16 KQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKLGPI 95 (212)
Q Consensus 16 k~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~ 95 (212)
+.++......+.+|.. ..++|++|+++++ +++.+.+. ....+++|++|++++. +++.+.. .....
T Consensus 10 ~~v~c~~~~l~~~p~~----~~~~l~~L~l~~n-~l~~~~~~------~~~~l~~L~~L~l~~n-~l~~~~~---~~~~~ 74 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG----IPAQTTYLDLETN-SLKSLPNG------VFDELTSLTQLYLGGN-KLQSLPN---GVFNK 74 (208)
T ss_dssp TEEECCSSCCSSCCSC----CCTTCSEEECCSS-CCCCCCTT------TTTTCTTCSEEECCSS-CCCCCCT---TTTTT
T ss_pred CEEEecCCCccCCCCC----CCCCCcEEEcCCC-ccCcCChh------hhcccccCcEEECCCC-ccCccCh---hhcCC
Confidence 3445555566777765 5679999999985 66654432 1236899999999985 5665522 22356
Q ss_pred cCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccccccccccccc
Q 044237 96 FQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDKEGVEKE 175 (212)
Q Consensus 96 l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~ 175 (212)
+++|++|+++++ .++.+.+.....+++|++|+++++. ++.+.. .....+++|++|++.++. +..+... .
T Consensus 75 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~~~-------~ 143 (208)
T 2o6s_A 75 LTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTNQ-LQSLPD-GVFDKLTQLKDLRLYQNQ-LKSVPDG-------V 143 (208)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTT-------T
T ss_pred CCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCCCc-CcccCH-hHhccCCcCCEEECCCCc-cceeCHH-------H
Confidence 899999999987 4555555435678999999999874 555533 345778999999999974 4443321 1
Q ss_pred cccCCccceeecCCC
Q 044237 176 EIVFRKLKMLELRDL 190 (212)
Q Consensus 176 ~~~~p~L~~L~l~~c 190 (212)
...+++|++|++.+.
T Consensus 144 ~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 144 FDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTTCTTCCEEECCSC
T ss_pred hccCCCccEEEecCC
Confidence 225789999999884
No 91
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.77 E-value=4.9e-08 Score=77.27 Aligned_cols=145 Identities=17% Similarity=0.194 Sum_probs=92.3
Q ss_pred cccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccC
Q 044237 10 HLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQD 89 (212)
Q Consensus 10 ~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~ 89 (212)
..+++|++|++.++.+..+|. ++.+++|++|+++++ .++.+.+ ...+++|++|+++++ +++.+..
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~---l~~l~~L~~L~L~~N-~i~~~~~--------l~~l~~L~~L~L~~N-~l~~l~~-- 102 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAG---MQFFTNLKELHLSHN-QISDLSP--------LKDLTKLEELSVNRN-RLKNLNG-- 102 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTT---GGGCTTCCEEECCSS-CCCCCGG--------GTTCSSCCEEECCSS-CCSCCTT--
T ss_pred hhcCcCcEEECcCCCcccchH---HhhCCCCCEEECCCC-ccCCChh--------hccCCCCCEEECCCC-ccCCcCc--
Confidence 357889999888656666662 358889999999885 5655443 225788888888876 3554421
Q ss_pred CccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccccccc
Q 044237 90 SKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDK 169 (212)
Q Consensus 90 ~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 169 (212)
. .. ++|+.|+++++ .++.+ +. ...+++|+.|+++++. ++.+. ....+++|++|+++++.- ..+ .
T Consensus 103 --~-~~-~~L~~L~L~~N-~l~~~-~~-l~~l~~L~~L~Ls~N~-i~~~~---~l~~l~~L~~L~L~~N~i-~~~-~--- 166 (263)
T 1xeu_A 103 --I-PS-ACLSRLFLDNN-ELRDT-DS-LIHLKNLEILSIRNNK-LKSIV---MLGFLSKLEVLDLHGNEI-TNT-G--- 166 (263)
T ss_dssp --C-CC-SSCCEEECCSS-CCSBS-GG-GTTCTTCCEEECTTSC-CCBCG---GGGGCTTCCEEECTTSCC-CBC-T---
T ss_pred --c-cc-CcccEEEccCC-ccCCC-hh-hcCcccccEEECCCCc-CCCCh---HHccCCCCCEEECCCCcC-cch-H---
Confidence 1 12 77888888877 34443 32 5667788888887764 55442 356677888888877642 222 0
Q ss_pred cccccccccCCccceeecCCC
Q 044237 170 EGVEKEEIVFRKLKMLELRDL 190 (212)
Q Consensus 170 ~~~~~~~~~~p~L~~L~l~~c 190 (212)
....+++|+.|++.+.
T Consensus 167 -----~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 167 -----GLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp -----TSTTCCCCCEEEEEEE
T ss_pred -----HhccCCCCCEEeCCCC
Confidence 1124566666666554
No 92
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.77 E-value=4.6e-08 Score=86.81 Aligned_cols=87 Identities=10% Similarity=0.110 Sum_probs=55.3
Q ss_pred cccccccEEecCccccccc------------------ccccCCccCC--CcCcccEEEEecCccccccCCCCcccCCCCC
Q 044237 66 GKLAMIKELQLHQHYHLEQ------------------LCKQDSKLGP--IFQYLEILKVYDCQSLLILLPSSSVSFRNLT 125 (212)
Q Consensus 66 ~~l~~L~~L~l~~~~~L~~------------------l~~~~~~~~~--~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~ 125 (212)
..+++|++|++++.. ++. + +.... .+++|++|++++|.-...+ |..+..+++|+
T Consensus 203 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~i----p~~l~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~ 276 (636)
T 4eco_A 203 MRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYK----TEDLKWDNLKDLTDVEVYNCPNLTKL-PTFLKALPEMQ 276 (636)
T ss_dssp GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT----TSCCCGGGCTTCCEEEEECCTTCSSC-CTTTTTCSSCC
T ss_pred hcccCCCEEECcCCc-cccccccccccccccchhcccC----chhhhhcccCCCCEEEecCCcCCccC-hHHHhcCCCCC
Confidence 356788888888765 554 3 22234 6788888888888655543 44467788888
Q ss_pred eEEEcCCCCCce-ecchhhHhc------CCCCcEEeeeccc
Q 044237 126 EIVAFGCKELIH-LVTSSTAKT------LVQLVTVRMRECR 159 (212)
Q Consensus 126 ~L~i~~C~~L~~-l~~~~~~~~------l~~L~~L~i~~c~ 159 (212)
+|++++|..++. ..+ ..... +++|++|++.++.
T Consensus 277 ~L~Ls~n~~l~~~~lp-~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 277 LINVACNRGISGEQLK-DDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp EEECTTCTTSCHHHHH-HHHHHHHHSGGGGTCCEEECCSSC
T ss_pred EEECcCCCCCccccch-HHHHhhhccccCCCCCEEECCCCc
Confidence 888888765543 222 12233 3777777777764
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.76 E-value=1.1e-08 Score=82.81 Aligned_cols=87 Identities=15% Similarity=0.077 Sum_probs=40.6
Q ss_pred cccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccc--cC-CCCcccCCCCCeEEEcCCCCCceecch--h
Q 044237 68 LAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLI--LL-PSSSVSFRNLTEIVAFGCKELIHLVTS--S 142 (212)
Q Consensus 68 l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~--l~-~~~~~~l~~L~~L~i~~C~~L~~l~~~--~ 142 (212)
+++|++|.++++. +..+. +.....+++|++|+++++.-... +. +.....+++|++|++++|. ++.+... .
T Consensus 144 ~~~L~~L~Ls~n~-l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~ 218 (310)
T 4glp_A 144 KPGLKVLSIAQAH-SPAFS---CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAA 218 (310)
T ss_dssp CSCCCEEEEECCS-SCCCC---TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHH
T ss_pred ccCCCEEEeeCCC-cchhh---HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHH
Confidence 5566666665542 22221 11223556666666666643211 11 1112345666666666653 3322110 0
Q ss_pred hHhcCCCCcEEeeeccc
Q 044237 143 TAKTLVQLVTVRMRECR 159 (212)
Q Consensus 143 ~~~~l~~L~~L~i~~c~ 159 (212)
..+.+++|++|+++++.
T Consensus 219 l~~~l~~L~~L~Ls~N~ 235 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNS 235 (310)
T ss_dssp HHHHTCCCSSEECTTSC
T ss_pred HHhcCCCCCEEECCCCC
Confidence 13455666666666654
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.76 E-value=1.2e-08 Score=80.83 Aligned_cols=164 Identities=16% Similarity=0.129 Sum_probs=110.7
Q ss_pred CccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccc
Q 044237 8 PQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCK 87 (212)
Q Consensus 8 p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~ 87 (212)
|...+.++..+++....+..++. ...+++|++|++++| .++.+.. ...+++|++|+++++ +++.+..
T Consensus 14 pd~~l~~l~~l~l~~~~i~~~~~---~~~l~~L~~L~l~~n-~i~~l~~--------l~~l~~L~~L~L~~N-~i~~~~~ 80 (263)
T 1xeu_A 14 PDPGLANAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNS-NIQSLAG--------MQFFTNLKELHLSHN-QISDLSP 80 (263)
T ss_dssp CSHHHHHHHHHHHTCSCTTSEEC---HHHHTTCSEEECTTS-CCCCCTT--------GGGCTTCCEEECCSS-CCCCCGG
T ss_pred CCHHHHHHHHHHhcCCCcccccc---hhhcCcCcEEECcCC-CcccchH--------HhhCCCCCEEECCCC-ccCCChh
Confidence 44456677777777555555553 248999999999986 6665432 235899999999987 4555421
Q ss_pred cCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccccc
Q 044237 88 QDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVIN 167 (212)
Q Consensus 88 ~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~ 167 (212)
...+++|+.|+++++ .++.+ +. ... ++|+.|++++|. ++.+. ....+++|+.|+++++. +..+.
T Consensus 81 -----l~~l~~L~~L~L~~N-~l~~l-~~-~~~-~~L~~L~L~~N~-l~~~~---~l~~l~~L~~L~Ls~N~-i~~~~-- 144 (263)
T 1xeu_A 81 -----LKDLTKLEELSVNRN-RLKNL-NG-IPS-ACLSRLFLDNNE-LRDTD---SLIHLKNLEILSIRNNK-LKSIV-- 144 (263)
T ss_dssp -----GTTCSSCCEEECCSS-CCSCC-TT-CCC-SSCCEEECCSSC-CSBSG---GGTTCTTCCEEECTTSC-CCBCG--
T ss_pred -----hccCCCCCEEECCCC-ccCCc-Cc-ccc-CcccEEEccCCc-cCCCh---hhcCcccccEEECCCCc-CCCCh--
Confidence 357899999999997 45554 32 333 899999999984 55542 36788999999999875 44432
Q ss_pred cccccccccccCCccceeecCCCCCCceecCCCccccCCCCccC
Q 044237 168 DKEGVEKEEIVFRKLKMLELRDLDSLTSFCSANYTFKFPSLQDL 211 (212)
Q Consensus 168 ~~~~~~~~~~~~p~L~~L~l~~cp~L~~~~~~~~~~~~p~L~~l 211 (212)
....+++|+.|.+.++. ++.+ . .-..+++|+.|
T Consensus 145 -------~l~~l~~L~~L~L~~N~-i~~~-~--~l~~l~~L~~L 177 (263)
T 1xeu_A 145 -------MLGFLSKLEVLDLHGNE-ITNT-G--GLTRLKKVNWI 177 (263)
T ss_dssp -------GGGGCTTCCEEECTTSC-CCBC-T--TSTTCCCCCEE
T ss_pred -------HHccCCCCCEEECCCCc-Ccch-H--HhccCCCCCEE
Confidence 12358899999988763 3433 1 11234555544
No 95
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.75 E-value=8.9e-09 Score=74.21 Aligned_cols=84 Identities=21% Similarity=0.183 Sum_probs=41.4
Q ss_pred ccccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhc
Q 044237 67 KLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKT 146 (212)
Q Consensus 67 ~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~ 146 (212)
.+++|++|+++++ +++.+ .....+++|++|+++++.- ....|.....+++|++|+++++. ++.+........
T Consensus 40 ~l~~L~~L~l~~n-~l~~~-----~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~ 111 (149)
T 2je0_A 40 EFEELEFLSTINV-GLTSI-----ANLPKLNKLKKLELSDNRV-SGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKK 111 (149)
T ss_dssp TCTTCCEEECTTS-CCCCC-----TTCCCCTTCCEEECCSSCC-CSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGG
T ss_pred hcCCCcEEECcCC-CCCCc-----hhhhcCCCCCEEECCCCcc-cchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhh
Confidence 3555555555554 33333 1123455566666655532 22122212346666677666654 333321133456
Q ss_pred CCCCcEEeeecc
Q 044237 147 LVQLVTVRMREC 158 (212)
Q Consensus 147 l~~L~~L~i~~c 158 (212)
+++|++|+++++
T Consensus 112 l~~L~~L~l~~N 123 (149)
T 2je0_A 112 LENLKSLDLFNC 123 (149)
T ss_dssp CTTCCEEECTTC
T ss_pred CCCCCEEeCcCC
Confidence 666777777666
No 96
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.75 E-value=7.6e-08 Score=83.92 Aligned_cols=127 Identities=14% Similarity=0.089 Sum_probs=55.9
Q ss_pred ccccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhc
Q 044237 67 KLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKT 146 (212)
Q Consensus 67 ~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~ 146 (212)
.+++|++|++++. +++.+... +.....+++|++|+++++.--..+.+.....+++|++|++++|. +... ....
T Consensus 375 ~l~~L~~L~L~~N-~l~~~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~----~~~~ 447 (562)
T 3a79_B 375 TLKRLQTLILQRN-GLKNFFKV-ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM-LTGS----VFRC 447 (562)
T ss_dssp SCSSCCEEECCSS-CCCBTTHH-HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC-CCGG----GGSS
T ss_pred ccCCCCEEECCCC-CcCCcccc-hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC-CCcc----hhhh
Confidence 3555666665553 23322110 01123455666666665542221222223345566666666553 2111 1222
Q ss_pred C-CCCcEEeeeccccccccccccccccccccccCCccceeecCCCCCCceecCCCccccCCCCccC
Q 044237 147 L-VQLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLDSLTSFCSANYTFKFPSLQDL 211 (212)
Q Consensus 147 l-~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~L~~~~~~~~~~~~p~L~~l 211 (212)
+ ++|++|+++++ .+..+... ...+++|++|++.++ .++.++.+. -..+++|+.+
T Consensus 448 l~~~L~~L~L~~N-~l~~ip~~--------~~~l~~L~~L~L~~N-~l~~l~~~~-~~~l~~L~~L 502 (562)
T 3a79_B 448 LPPKVKVLDLHNN-RIMSIPKD--------VTHLQALQELNVASN-QLKSVPDGV-FDRLTSLQYI 502 (562)
T ss_dssp CCTTCSEEECCSS-CCCCCCTT--------TTSSCCCSEEECCSS-CCCCCCTTS-TTTCTTCCCE
T ss_pred hcCcCCEEECCCC-cCcccChh--------hcCCCCCCEEECCCC-CCCCCCHHH-HhcCCCCCEE
Confidence 3 45666666665 33333211 114566777776664 344555431 1234555443
No 97
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.74 E-value=1.1e-07 Score=84.25 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=24.2
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcce
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEE 53 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~ 53 (212)
.+|....++|++|+++++.++.+|. .+++|++|++++| .++.
T Consensus 54 ~lp~~l~~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N-~l~~ 95 (622)
T 3g06_A 54 TLPDCLPAHITTLVIPDNNLTSLPA-----LPPELRTLEVSGN-QLTS 95 (622)
T ss_dssp CCCSCCCTTCSEEEECSCCCSCCCC-----CCTTCCEEEECSC-CCSC
T ss_pred ccChhhCCCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCC-cCCc
Confidence 3444445677777777545555553 4566666666664 3443
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.74 E-value=1.3e-07 Score=73.17 Aligned_cols=150 Identities=17% Similarity=0.069 Sum_probs=106.1
Q ss_pred ccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCccCC
Q 044237 15 LKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKLGP 94 (212)
Q Consensus 15 Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~ 94 (212)
-+.++.....+..+|.. -.++|++|+++++ .++.+.+. ....+++|++|.+++.. ++.+.. ....
T Consensus 21 ~~~v~c~~~~l~~ip~~----~~~~L~~L~Ls~n-~i~~~~~~------~~~~l~~L~~L~L~~N~-l~~i~~---~~~~ 85 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG----IPTNAQILYLHDN-QITKLEPG------VFDSLINLKELYLGSNQ-LGALPV---GVFD 85 (229)
T ss_dssp TTEEECTTSCCSSCCSC----CCTTCSEEECCSS-CCCCCCTT------TTTTCTTCCEEECCSSC-CCCCCT---TTTT
T ss_pred CCEeEccCCCcCccCCC----CCCCCCEEEcCCC-ccCccCHH------HhhCccCCcEEECCCCC-CCCcCh---hhcc
Confidence 45566666677888875 4589999999985 66655331 12368999999999864 555532 2235
Q ss_pred CcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecccccccccccccccccc
Q 044237 95 IFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDKEGVEK 174 (212)
Q Consensus 95 ~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~ 174 (212)
.+++|+.|+++++ .++.+.+.....+++|++|+++++. ++.++ .....+++|++|+++++ .+..+...
T Consensus 86 ~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp--~~~~~l~~L~~L~L~~N-~l~~~~~~------- 153 (229)
T 3e6j_A 86 SLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNK-LTELP--RGIERLTHLTHLALDQN-QLKSIPHG------- 153 (229)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCSCC--TTGGGCTTCSEEECCSS-CCCCCCTT-------
T ss_pred cCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCCc-ccccC--cccccCCCCCEEECCCC-cCCccCHH-------
Confidence 6899999999997 5666655545678999999999874 65553 24578899999999987 44444321
Q ss_pred ccccCCccceeecCCCC
Q 044237 175 EEIVFRKLKMLELRDLD 191 (212)
Q Consensus 175 ~~~~~p~L~~L~l~~cp 191 (212)
....+++|+.|.+.+.|
T Consensus 154 ~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTCTTCCEEECTTSC
T ss_pred HHhCCCCCCEEEeeCCC
Confidence 12357899999988755
No 99
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.74 E-value=4.3e-09 Score=91.92 Aligned_cols=144 Identities=11% Similarity=0.092 Sum_probs=87.4
Q ss_pred ccCCccEEEEc-CCCCceec-----------hH--HHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEec
Q 044237 11 LFGSLKQLNIG-GDDSACFP-----------IW--NVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQL 76 (212)
Q Consensus 11 ~l~~Lk~L~l~-~~~~~~~p-----------~~--~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l 76 (212)
.|++|++|++. +.....+. .+ .+...+++|++|++++|. +..... . .-...+++|++|++
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~-~----~l~~~~~~L~~L~L 137 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCL-E----LIAKSFKNFKVLVL 137 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHH-H----HHHHHCTTCCEEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHH-H----HHHHhCCCCcEEeC
Confidence 47889999998 43332221 01 134578899999998873 321100 0 00114789999999
Q ss_pred CcccccccccccCCccCCCcCcccEEEEecCccccccC----CCCcccCCCCCeEEEcCCC-CCceecchhhHhcCCCCc
Q 044237 77 HQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILL----PSSSVSFRNLTEIVAFGCK-ELIHLVTSSTAKTLVQLV 151 (212)
Q Consensus 77 ~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~----~~~~~~l~~L~~L~i~~C~-~L~~l~~~~~~~~l~~L~ 151 (212)
.+|..+..... ......+++|++|++++|. +.... +.....+++|++|++++|. .+..-.......++++|+
T Consensus 138 ~~~~~~~~~~l--~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~ 214 (594)
T 2p1m_B 138 SSCEGFSTDGL--AAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214 (594)
T ss_dssp ESCEEEEHHHH--HHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCC
T ss_pred CCcCCCCHHHH--HHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCc
Confidence 99876654211 1111357899999999987 33311 1112357799999999986 222111122345679999
Q ss_pred EEeeeccccccc
Q 044237 152 TVRMRECRAMTE 163 (212)
Q Consensus 152 ~L~i~~c~~l~~ 163 (212)
+|++.+|..+..
T Consensus 215 ~L~L~~~~~~~~ 226 (594)
T 2p1m_B 215 SLKLNRAVPLEK 226 (594)
T ss_dssp EEECCTTSCHHH
T ss_pred EEecCCCCcHHH
Confidence 999999965544
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.74 E-value=5.2e-09 Score=84.65 Aligned_cols=176 Identities=14% Similarity=0.022 Sum_probs=107.0
Q ss_pred cccCCccEEEEcCCCCc-eec---hHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 10 HLFGSLKQLNIGGDDSA-CFP---IWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 10 ~~l~~Lk~L~l~~~~~~-~~p---~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
..+++|++|+++.+.+. ..+ .. ....+++|++|++++| .+..+++. ....+++|++|++++..-....
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~-~~~~~~~L~~L~Ls~n-~l~~~~~~------~~~~l~~L~~L~Ls~N~l~~~~ 185 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAEL-QQWLKPGLKVLSIAQA-HSPAFSCE------QVRAFPALTSLDLSDNPGLGER 185 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHH-HTTBCSCCCEEEEECC-SSCCCCTT------SCCCCTTCCEEECCSCTTCHHH
T ss_pred ccCCCCCEEEeecccccchhhhhHHH-HhhhccCCCEEEeeCC-CcchhhHH------HhccCCCCCEEECCCCCCccch
Confidence 45889999999944443 223 11 2236899999999996 55544431 1236889999999987522211
Q ss_pred cccCCccCCCcCcccEEEEecCccccccCCC---CcccCCCCCeEEEcCCCCCceecchhhHhc---CCCCcEEeeeccc
Q 044237 86 CKQDSKLGPIFQYLEILKVYDCQSLLILLPS---SSVSFRNLTEIVAFGCKELIHLVTSSTAKT---LVQLVTVRMRECR 159 (212)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~---~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~---l~~L~~L~i~~c~ 159 (212)
..........+++|++|++++|. ++.+... ....+++|++|+++++. +....+.. ... +++|++|+++++.
T Consensus 186 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~~~~~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 186 GLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPS-APRCMWSSALNSLNLSFAG 262 (310)
T ss_dssp HHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSC-CSSCCCCTTCCCEECCSSC
T ss_pred hhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhh-HHhccCcCcCCEEECCCCC
Confidence 00011112467899999999884 3332110 02356899999999875 44442211 223 3789999998874
Q ss_pred cccccccccccccccccccCCccceeecCCCCCCceecCCCccccCCCCccC
Q 044237 160 AMTEVVINDKEGVEKEEIVFRKLKMLELRDLDSLTSFCSANYTFKFPSLQDL 211 (212)
Q Consensus 160 ~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~L~~~~~~~~~~~~p~L~~l 211 (212)
++++.. ..+++|++|++.++. ++.++. ...+|+|+.|
T Consensus 263 -l~~lp~----------~~~~~L~~L~Ls~N~-l~~~~~---~~~l~~L~~L 299 (310)
T 4glp_A 263 -LEQVPK----------GLPAKLRVLDLSSNR-LNRAPQ---PDELPEVDNL 299 (310)
T ss_dssp -CCSCCS----------CCCSCCSCEECCSCC-CCSCCC---TTSCCCCSCE
T ss_pred -CCchhh----------hhcCCCCEEECCCCc-CCCCch---hhhCCCccEE
Confidence 344421 134789999988763 454432 2345777765
No 101
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.74 E-value=2.7e-08 Score=84.95 Aligned_cols=136 Identities=11% Similarity=0.048 Sum_probs=77.9
Q ss_pred CccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccc-------------cccccccccccccEE
Q 044237 8 PQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEG-------------CLEKHVGKLAMIKEL 74 (212)
Q Consensus 8 p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~-------------~~~~~~~~l~~L~~L 74 (212)
+...+++|++|+++.+.++.+|.. .+++|++|.++++ .++.+ +... ........+++|+.|
T Consensus 165 ~~~~l~~L~~L~ls~n~l~~l~l~----~l~~L~~L~l~~N-~l~~~-~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L 238 (457)
T 3bz5_A 165 DVTPQTQLTTLDCSFNKITELDVS----QNKLLNRLNCDTN-NITKL-DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYF 238 (457)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCT----TCTTCCEEECCSS-CCSCC-CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEE
T ss_pred ccccCCcCCEEECCCCccceeccc----cCCCCCEEECcCC-cCCee-ccccCCCCCEEECcCCcccccCccccCCCCEE
Confidence 444567777777775555555533 5666666666553 33222 1000 000112357888888
Q ss_pred ecCcccccccccccCCccCCCcC----------cccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhH
Q 044237 75 QLHQHYHLEQLCKQDSKLGPIFQ----------YLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTA 144 (212)
Q Consensus 75 ~l~~~~~L~~l~~~~~~~~~~l~----------~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~ 144 (212)
++++. +++.+.. ..++ +|+.|++++|..+..+ | ...+++|+.|++++|..+..++.
T Consensus 239 ~l~~N-~l~~~~~------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~-~--~~~l~~L~~L~Ls~n~~l~~l~~---- 304 (457)
T 3bz5_A 239 DCSVN-PLTELDV------STLSKLTTLHCIQTDLLEIDLTHNTQLIYF-Q--AEGCRKIKELDVTHNTQLYLLDC---- 304 (457)
T ss_dssp ECCSS-CCSCCCC------TTCTTCCEEECTTCCCSCCCCTTCTTCCEE-E--CTTCTTCCCCCCTTCTTCCEEEC----
T ss_pred EeeCC-cCCCcCH------HHCCCCCEEeccCCCCCEEECCCCccCCcc-c--ccccccCCEEECCCCcccceecc----
Confidence 88875 3444321 1233 4556666666655543 2 34578999999999988776642
Q ss_pred hcCCCCcEEeeecccccccc
Q 044237 145 KTLVQLVTVRMRECRAMTEV 164 (212)
Q Consensus 145 ~~l~~L~~L~i~~c~~l~~i 164 (212)
..++|+.|.+.+|++++.+
T Consensus 305 -~~~~L~~L~l~~~~~L~~L 323 (457)
T 3bz5_A 305 -QAAGITELDLSQNPKLVYL 323 (457)
T ss_dssp -TTCCCSCCCCTTCTTCCEE
T ss_pred -CCCcceEechhhcccCCEE
Confidence 3355666666666666554
No 102
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.72 E-value=1.2e-07 Score=84.08 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=27.3
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCccee
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEV 54 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i 54 (212)
.+++|++|+++++.++.+|. .+++|++|+++++ .++.+
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N-~l~~l 116 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV-----LPPGLLELSIFSN-PLTHL 116 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC-----CCTTCCEEEECSC-CCCCC
T ss_pred cCCCCCEEEcCCCcCCcCCC-----CCCCCCEEECcCC-cCCCC
Confidence 57888888888666666664 5678888888775 44443
No 103
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.69 E-value=6.2e-08 Score=84.87 Aligned_cols=109 Identities=18% Similarity=0.194 Sum_probs=66.0
Q ss_pred ccccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhc
Q 044237 67 KLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKT 146 (212)
Q Consensus 67 ~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~ 146 (212)
.+++|+.|.+++......+. +.....+++|+.|++++| +++.+.|.....+++|++|+++++ +++.+.+ .....
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~---~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~-~~~~~ 540 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFL---PDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDT-FPYKC 540 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEE---CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCC-GGGTT
T ss_pred cchhhhhhhhhhcccccccC---chhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCCh-hHHhC
Confidence 45677777777765444432 122345677888888877 466655655666778888888776 3555533 34566
Q ss_pred CCCCcEEeeeccccccccccccccccccccccC-CccceeecCC
Q 044237 147 LVQLVTVRMRECRAMTEVVINDKEGVEKEEIVF-RKLKMLELRD 189 (212)
Q Consensus 147 l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~-p~L~~L~l~~ 189 (212)
+++|++|+++++. +..+.... ...+ ++|+.|++.+
T Consensus 541 l~~L~~L~Ls~N~-l~~~~~~~-------l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 541 LNSLQVLDYSLNH-IMTSKKQE-------LQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CTTCCEEECTTSC-CCBCCSSC-------TTCCCTTCCEEECTT
T ss_pred CCCCCEEECCCCc-CCCCCHHH-------HHhhhCcCCEEEeeC
Confidence 7788888887764 22322111 1123 5788887765
No 104
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.69 E-value=9e-09 Score=89.94 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=18.3
Q ss_pred ccCCccEEEEcCCCCce-----echHHHHhhcCCCcEEEEee
Q 044237 11 LFGSLKQLNIGGDDSAC-----FPIWNVLERFHSLEILILCY 47 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~i~~ 47 (212)
.+++|++|++..+.... ++. ....+++|++|++++
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~ 201 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHE--LAQHNTSLEVLNFYM 201 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHH--HHHHCCCCCEEECTT
T ss_pred hCCCCCEEECccccccCcchhHHHH--HHhcCCCccEEEeec
Confidence 35677777777222111 111 234666677776654
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.69 E-value=2e-07 Score=71.76 Aligned_cols=151 Identities=9% Similarity=-0.001 Sum_probs=104.5
Q ss_pred cEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCccCCC
Q 044237 16 KQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKLGPI 95 (212)
Q Consensus 16 k~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~ 95 (212)
++++++.+.++.+|.. -.+.+++|+++++ .++.+.+.. ....+++|++|++++.. ++.+.. .....
T Consensus 14 ~~l~~s~n~l~~iP~~----~~~~~~~L~L~~N-~l~~~~~~~-----~~~~l~~L~~L~L~~N~-i~~i~~---~~~~~ 79 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH----IPQYTAELRLNNN-EFTVLEATG-----IFKKLPQLRKINFSNNK-ITDIEE---GAFEG 79 (220)
T ss_dssp TEEECCSSCCSSCCSC----CCTTCSEEECCSS-CCCEECCCC-----CGGGCTTCCEEECCSSC-CCEECT---TTTTT
T ss_pred CEeEeCCCCcccCccC----CCCCCCEEEcCCC-cCCccCchh-----hhccCCCCCEEECCCCc-CCEECH---HHhCC
Confidence 5777776677778875 3467899999984 777664321 12368999999999863 665532 22357
Q ss_pred cCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccccccccccccc
Q 044237 96 FQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDKEGVEKE 175 (212)
Q Consensus 96 l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~ 175 (212)
+++|++|+++++. ++.+.+.....+++|++|+++++. ++.+.+ .....+++|++|++.++. +..+... .
T Consensus 80 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~-------~ 148 (220)
T 2v70_A 80 ASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNR-ITCVGN-DSFIGLSSVRLLSLYDNQ-ITTVAPG-------A 148 (220)
T ss_dssp CTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSC-CCCBCT-TSSTTCTTCSEEECTTSC-CCCBCTT-------T
T ss_pred CCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCc-CCeECH-hHcCCCccCCEEECCCCc-CCEECHH-------H
Confidence 8999999999874 455545445678999999999875 555433 345678999999999864 3443221 1
Q ss_pred cccCCccceeecCCCC
Q 044237 176 EIVFRKLKMLELRDLD 191 (212)
Q Consensus 176 ~~~~p~L~~L~l~~cp 191 (212)
...+++|+.|.+.+.|
T Consensus 149 ~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 149 FDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTTCTTCCEEECCSCC
T ss_pred hcCCCCCCEEEecCcC
Confidence 2257889999988765
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.69 E-value=2.9e-07 Score=70.84 Aligned_cols=150 Identities=11% Similarity=0.089 Sum_probs=104.4
Q ss_pred cEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCccCCC
Q 044237 16 KQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKLGPI 95 (212)
Q Consensus 16 k~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~ 95 (212)
+.++..+..++.+|.. -.++|++|+++++ +++.+.+. ....+++|++|++++. +++.+. +.....
T Consensus 14 ~~v~c~~~~l~~iP~~----l~~~l~~L~l~~n-~i~~i~~~------~~~~l~~L~~L~Ls~N-~i~~~~---~~~~~~ 78 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN----LPETITEIRLEQN-TIKVIPPG------AFSPYKKLRRIDLSNN-QISELA---PDAFQG 78 (220)
T ss_dssp TEEECTTSCCSSCCSS----CCTTCCEEECCSS-CCCEECTT------SSTTCTTCCEEECCSS-CCCEEC---TTTTTT
T ss_pred CEEEcCCCCcCcCCCc----cCcCCCEEECCCC-cCCCcCHh------HhhCCCCCCEEECCCC-cCCCcC---HHHhhC
Confidence 5566666677888875 3479999999984 77766542 1236889999999986 355442 223356
Q ss_pred cCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccccccccccccc
Q 044237 96 FQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDKEGVEKE 175 (212)
Q Consensus 96 l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~ 175 (212)
+++|++|+++++ .++.+.+.....+++|++|+++++. ++.+.+ .....+++|+.|++.++. +..+... .
T Consensus 79 l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~-------~ 147 (220)
T 2v9t_B 79 LRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNANK-INCLRV-DAFQDLHNLNLLSLYDNK-LQTIAKG-------T 147 (220)
T ss_dssp CSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTT-------T
T ss_pred CcCCCEEECCCC-cCCccCHhHccCCCCCCEEECCCCC-CCEeCH-HHcCCCCCCCEEECCCCc-CCEECHH-------H
Confidence 899999999987 4556555434678999999999874 555533 356788999999999875 3333221 1
Q ss_pred cccCCccceeecCCCC
Q 044237 176 EIVFRKLKMLELRDLD 191 (212)
Q Consensus 176 ~~~~p~L~~L~l~~cp 191 (212)
...+++|+.|++.+.|
T Consensus 148 ~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred HhCCCCCCEEEeCCCC
Confidence 2257889999888765
No 107
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.65 E-value=2.3e-07 Score=80.91 Aligned_cols=134 Identities=12% Similarity=0.022 Sum_probs=90.9
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+|.+..++|++|+++.+.+..++.. .++.+++|++|+++++ .++.+.+. ....+++|++|++++.. ++.+
T Consensus 45 ~ip~~~~~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~------~~~~l~~L~~L~Ls~N~-l~~l 115 (562)
T 3a79_B 45 HVPKDLPPRTKALSLSQNSISELRMP-DISFLSELRVLRLSHN-RIRSLDFH------VFLFNQDLEYLDVSHNR-LQNI 115 (562)
T ss_dssp SCCTTSCTTCCEEECCSSCCCCCCGG-GTTTCTTCCEEECCSC-CCCEECTT------TTTTCTTCCEEECTTSC-CCEE
T ss_pred cCCCCCCCCcCEEECCCCCccccChh-hhccCCCccEEECCCC-CCCcCCHH------HhCCCCCCCEEECCCCc-CCcc
Confidence 46666678999999996666667655 4568999999999986 67666432 12257889999998863 6665
Q ss_pred cccCCccCCCcCcccEEEEecCcccccc-CCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCC--cEEeeecccc
Q 044237 86 CKQDSKLGPIFQYLEILKVYDCQSLLIL-LPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQL--VTVRMRECRA 160 (212)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l-~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L--~~L~i~~c~~ 160 (212)
+.. .+++|++|+++++. +..+ .|.....+++|++|+++++. ++. .....+++| ++|++.++.-
T Consensus 116 p~~------~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~----~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 116 SCC------PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQ----LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CSC------CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCT----TTTGGGTTSCEEEEEEEESSC
T ss_pred Ccc------ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-ccc----CchhhhhhceeeEEEeecccc
Confidence 321 57888999998875 3332 23346678888988888754 322 123344455 8888777643
No 108
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.64 E-value=1.5e-08 Score=73.07 Aligned_cols=130 Identities=19% Similarity=0.175 Sum_probs=90.8
Q ss_pred ccCCccEEEEcCCCCc--eechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCccccccccccc
Q 044237 11 LFGSLKQLNIGGDDSA--CFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQ 88 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~--~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~ 88 (212)
.+++|++|+++++.+. .+|.. ++.+++|++|++++| .++.+ .. ...+++|++|+++++. ++..
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~--~~~l~~L~~L~l~~n-~l~~~-~~-------~~~l~~L~~L~Ls~n~-i~~~--- 79 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL--TDEFEELEFLSTINV-GLTSI-AN-------LPKLNKLKKLELSDNR-VSGG--- 79 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC--CTTCTTCCEEECTTS-CCCCC-TT-------CCCCTTCCEEECCSSC-CCSC---
T ss_pred CCccCeEEEccCCcCChhHHHHH--HhhcCCCcEEECcCC-CCCCc-hh-------hhcCCCCCEEECCCCc-ccch---
Confidence 4689999999955555 67753 458999999999986 66654 21 2368999999999874 4431
Q ss_pred CCccCCCcCcccEEEEecCccccccC-CCCcccCCCCCeEEEcCCCCCceecc--hhhHhcCCCCcEEeeec
Q 044237 89 DSKLGPIFQYLEILKVYDCQSLLILL-PSSSVSFRNLTEIVAFGCKELIHLVT--SSTAKTLVQLVTVRMRE 157 (212)
Q Consensus 89 ~~~~~~~l~~L~~L~i~~C~~L~~l~-~~~~~~l~~L~~L~i~~C~~L~~l~~--~~~~~~l~~L~~L~i~~ 157 (212)
.+.....+++|++|+++++. ++.+. +.....+++|++|++++|. +..+.. ......+++|+.|++++
T Consensus 80 ~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 80 LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp THHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 11122358899999999985 44431 1336789999999999984 555432 13467788888887653
No 109
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.63 E-value=1.6e-07 Score=69.60 Aligned_cols=126 Identities=16% Similarity=0.078 Sum_probs=63.9
Q ss_pred cEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCccCCC
Q 044237 16 KQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKLGPI 95 (212)
Q Consensus 16 k~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~ 95 (212)
+.++.....+..+|.. ..++|++|+++++ +++.+++.. ...+++|++|++++. +++.+.. .....
T Consensus 10 ~~l~~~~~~l~~~p~~----~~~~l~~L~l~~n-~l~~~~~~~------~~~l~~L~~L~l~~n-~l~~~~~---~~~~~ 74 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG----IPSSATRLELESN-KLQSLPHGV------FDKLTQLTKLSLSQN-QIQSLPD---GVFDK 74 (177)
T ss_dssp TEEECCSSCCSSCCTT----CCTTCSEEECCSS-CCCCCCTTT------TTTCTTCSEEECCSS-CCCCCCT---TTTTT
T ss_pred CEEEecCCCCccCCCC----CCCCCcEEEeCCC-cccEeCHHH------hcCcccccEEECCCC-cceEeCh---hHccC
Confidence 4455544445555543 3356666666653 344333211 124566666666654 3443321 11234
Q ss_pred cCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccc
Q 044237 96 FQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECR 159 (212)
Q Consensus 96 l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 159 (212)
+++|+.|+++++ .++.+.+.....+++|++|+++++ +++.+.. .....+++|++|++.+++
T Consensus 75 l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 75 LTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCccCEEECCCC-CccccCHHHhhCCcccCEEECcCC-cceEeCH-HHhcCCcccCEEEecCCC
Confidence 566666666664 344433332345667777777665 3444322 233556677777776654
No 110
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.56 E-value=5.2e-07 Score=82.47 Aligned_cols=137 Identities=16% Similarity=0.054 Sum_probs=93.2
Q ss_pred ccCCccEEEEc-CCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCccccccc-cccc
Q 044237 11 LFGSLKQLNIG-GDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQ-LCKQ 88 (212)
Q Consensus 11 ~l~~Lk~L~l~-~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~-l~~~ 88 (212)
.+++|++|+++ +.....++.. .++.+++|++|++++| .+..+.+. ....+++|++|+++++. +.. +...
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~-~f~~L~~L~~L~Ls~N-~l~~~~p~------~~~~l~~L~~L~Ls~n~-l~~~~~~~ 116 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKE-AFRNLPNLRILDLGSS-KIYFLHPD------AFQGLFHLFELRLYFCG-LSDAVLKD 116 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTT-TTSSCTTCCEEECTTC-CCCEECTT------SSCSCSSCCCEECTTCC-CSSCCSTT
T ss_pred ccccCeEEeCCCCCCccccCHH-HhcCCCCCCEEECCCC-cCcccCHh------HccCCcccCEeeCcCCC-CCcccccC
Confidence 58899999999 5466666544 4679999999999986 56655332 12368999999999873 443 2111
Q ss_pred CCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcC--CCCcEEeeecccc
Q 044237 89 DSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTL--VQLVTVRMRECRA 160 (212)
Q Consensus 89 ~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l--~~L~~L~i~~c~~ 160 (212)
.....+++|++|+++++.--....+.....+++|++|+++++. +....+. ....+ ++|+.|.+.++.-
T Consensus 117 --~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~-~l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 117 --GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEH-ELEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp --CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSG-GGHHHHHCSSCCCEECCSBS
T ss_pred --ccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHH-HcccccCCccceEECCCCcc
Confidence 1235789999999999854332222336789999999999874 3333222 22333 7888888887753
No 111
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.56 E-value=6.9e-07 Score=76.15 Aligned_cols=13 Identities=8% Similarity=-0.077 Sum_probs=9.1
Q ss_pred cCCccceeecCCC
Q 044237 178 VFRKLKMLELRDL 190 (212)
Q Consensus 178 ~~p~L~~L~l~~c 190 (212)
.+++|++|++.++
T Consensus 235 ~l~~L~~L~l~~N 247 (454)
T 1jl5_A 235 NLPFLTTIYADNN 247 (454)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 4677777777765
No 112
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.54 E-value=6.1e-07 Score=76.51 Aligned_cols=11 Identities=18% Similarity=0.465 Sum_probs=6.4
Q ss_pred CccceeecCCC
Q 044237 180 RKLKMLELRDL 190 (212)
Q Consensus 180 p~L~~L~l~~c 190 (212)
++|+.|++.++
T Consensus 277 ~~L~~L~ls~N 287 (454)
T 1jl5_A 277 QSLTFLDVSEN 287 (454)
T ss_dssp TTCCEEECCSS
T ss_pred CcCCEEECcCC
Confidence 55666666554
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.53 E-value=1.2e-06 Score=72.32 Aligned_cols=152 Identities=14% Similarity=0.107 Sum_probs=104.3
Q ss_pred cEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceecccccccccccc-ccccccEEecCcccccccccccCCccCC
Q 044237 16 KQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVG-KLAMIKELQLHQHYHLEQLCKQDSKLGP 94 (212)
Q Consensus 16 k~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~-~l~~L~~L~l~~~~~L~~l~~~~~~~~~ 94 (212)
+.++.....+..+|.. -.+.++.|+++++ +++.+.... .. .+++|++|++++. +++.+.. ....
T Consensus 21 ~~l~c~~~~l~~iP~~----~~~~l~~L~Ls~N-~l~~l~~~~------~~~~l~~L~~L~L~~N-~i~~i~~---~~~~ 85 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS----LPSYTALLDLSHN-NLSRLRAEW------TPTRLTNLHSLLLSHN-HLNFISS---EAFV 85 (361)
T ss_dssp TEEECCSSCCSSCCSS----CCTTCSEEECCSS-CCCEECTTS------SSSCCTTCCEEECCSS-CCCEECT---TTTT
T ss_pred CEEEeCCCCcCccCcc----CCCCCCEEECCCC-CCCccChhh------hhhcccccCEEECCCC-cCCccCh---hhcc
Confidence 5677776677888875 4467999999984 777765421 12 5889999999986 4665532 2235
Q ss_pred CcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecccccccccccccccccc
Q 044237 95 IFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDKEGVEK 174 (212)
Q Consensus 95 ~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~ 174 (212)
.+++|++|+++++. ++.+.+.....+++|+.|+++++. +..+.+ .....+++|+.|++.++. +..+....- .
T Consensus 86 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~-~~~~~l~~L~~L~L~~N~-l~~l~~~~~----~ 157 (361)
T 2xot_A 86 PVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNH-IVVVDR-NAFEDMAQLQKLYLSQNQ-ISRFPVELI----K 157 (361)
T ss_dssp TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSSC-CCSCCGGGT----C
T ss_pred CCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCc-ccEECH-HHhCCcccCCEEECCCCc-CCeeCHHHh----c
Confidence 78999999999964 666656546678999999999875 555533 356788999999999874 333322100 0
Q ss_pred ccccCCccceeecCCC
Q 044237 175 EEIVFRKLKMLELRDL 190 (212)
Q Consensus 175 ~~~~~p~L~~L~l~~c 190 (212)
....+++|+.|++.+.
T Consensus 158 ~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSN 173 (361)
T ss_dssp ----CTTCCEEECCSS
T ss_pred CcccCCcCCEEECCCC
Confidence 0124788888888765
No 114
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.52 E-value=7e-07 Score=66.05 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=78.6
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+|...+++|++|++.++.+..+|.. .++.+++|++|+++++ .++.+++.. ...+++|++|++++. +++.+
T Consensus 21 ~~p~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~------~~~l~~L~~L~l~~N-~l~~~ 91 (177)
T 2o6r_A 21 SVPTGIPSSATRLELESNKLQSLPHG-VFDKLTQLTKLSLSQN-QIQSLPDGV------FDKLTKLTILYLHEN-KLQSL 91 (177)
T ss_dssp SCCTTCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSS-CCCCCCTTT------TTTCTTCCEEECCSS-CCCCC
T ss_pred cCCCCCCCCCcEEEeCCCcccEeCHH-HhcCcccccEEECCCC-cceEeChhH------ccCCCccCEEECCCC-Ccccc
Confidence 45556678899999886566667665 4568889999999885 666554321 125788999998875 35544
Q ss_pred cccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCC
Q 044237 86 CKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCK 133 (212)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~ 133 (212)
.. .....+++|++|+++++ .++.+.+.....+++|++|++++++
T Consensus 92 ~~---~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 92 PN---GVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CT---TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CH---HHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 22 22346788999999887 5555544434567889999888765
No 115
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.50 E-value=9.1e-08 Score=71.23 Aligned_cols=87 Identities=9% Similarity=0.140 Sum_probs=37.0
Q ss_pred cccEEecCcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccC----CCCCeEEEcCCCCCceecchhhHh
Q 044237 70 MIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSF----RNLTEIVAFGCKELIHLVTSSTAK 145 (212)
Q Consensus 70 ~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l----~~L~~L~i~~C~~L~~l~~~~~~~ 145 (212)
+|++|++++|. ++... ......+++|++|++++|..+++..-..+..+ ++|++|++++|.++++.... ...
T Consensus 62 ~L~~LDLs~~~-Itd~G---L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIG---FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALH 136 (176)
T ss_dssp CEEEEEEESCC-CCGGG---GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGG
T ss_pred eEeEEeCcCCC-ccHHH---HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHh
Confidence 45555555554 33211 11113445555555555555444210001111 24555555555555443211 123
Q ss_pred cCCCCcEEeeeccccc
Q 044237 146 TLVQLVTVRMRECRAM 161 (212)
Q Consensus 146 ~l~~L~~L~i~~c~~l 161 (212)
.+++|++|++++|+.+
T Consensus 137 ~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGV 152 (176)
T ss_dssp GCTTCCEEEEESCTTC
T ss_pred cCCCCCEEECCCCCCC
Confidence 3455555555555544
No 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.49 E-value=3.3e-07 Score=67.83 Aligned_cols=132 Identities=11% Similarity=0.080 Sum_probs=74.4
Q ss_pred cCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCc
Q 044237 12 FGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSK 91 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~ 91 (212)
..+|++|+++++.+..+|. .....++|++|+++++ .++.+ +. ...+++|++|++++. +++.+.. .
T Consensus 18 ~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N-~l~~~-~~-------l~~l~~L~~L~Ls~N-~l~~~~~---~ 82 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDN-EIRKL-DG-------FPLLRRLKTLLVNNN-RICRIGE---G 82 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSS-CCCEE-CC-------CCCCSSCCEEECCSS-CCCEECS---C
T ss_pred cCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCC-CCCcc-cc-------cccCCCCCEEECCCC-cccccCc---c
Confidence 6678888887555555553 2223348888888775 55554 21 124677888887775 3444421 1
Q ss_pred cCCCcCcccEEEEecCccccccCC-CCcccCCCCCeEEEcCCCCCceecch--hhHhcCCCCcEEeeecccc
Q 044237 92 LGPIFQYLEILKVYDCQSLLILLP-SSSVSFRNLTEIVAFGCKELIHLVTS--STAKTLVQLVTVRMRECRA 160 (212)
Q Consensus 92 ~~~~l~~L~~L~i~~C~~L~~l~~-~~~~~l~~L~~L~i~~C~~L~~l~~~--~~~~~l~~L~~L~i~~c~~ 160 (212)
....+++|++|+++++. +..+.+ .....+++|+.|++++++ +..+... .....+++|+.|++.++..
T Consensus 83 ~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 83 LDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 11346677777777763 333322 124566777777777664 2222110 0245667777777766654
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.49 E-value=8.3e-07 Score=66.90 Aligned_cols=111 Identities=12% Similarity=0.164 Sum_probs=47.0
Q ss_pred CCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCccccccccc
Q 044237 7 FPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLC 86 (212)
Q Consensus 7 ~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~ 86 (212)
+|.+.+++|++|++.++.+..+|. .+..+++|++|+++++ .++.+.+. ....+++|++|++++. +++.+.
T Consensus 25 ip~~~~~~l~~L~L~~n~i~~ip~--~~~~l~~L~~L~Ls~N-~i~~i~~~------~f~~l~~L~~L~Ls~N-~l~~i~ 94 (193)
T 2wfh_A 25 LPKGIPRDVTELYLDGNQFTLVPK--ELSNYKHLTLIDLSNN-RISTLSNQ------SFSNMTQLLTLILSYN-RLRCIP 94 (193)
T ss_dssp CCSCCCTTCCEEECCSSCCCSCCG--GGGGCTTCCEEECCSS-CCCCCCTT------TTTTCTTCCEEECCSS-CCCBCC
T ss_pred CCCCCCCCCCEEECCCCcCchhHH--HhhcccCCCEEECCCC-cCCEeCHh------HccCCCCCCEEECCCC-ccCEeC
Confidence 344444555555555444445543 2345555555555552 34333221 0113455555555543 233321
Q ss_pred ccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcC
Q 044237 87 KQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFG 131 (212)
Q Consensus 87 ~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~ 131 (212)
. .....+++|+.|+++++ .++.+.+.....+++|+.|++++
T Consensus 95 ~---~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 95 P---RTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp T---TTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCS
T ss_pred H---HHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCC
Confidence 1 11223445555555543 23332222233344455554443
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.48 E-value=3.5e-07 Score=67.71 Aligned_cols=136 Identities=13% Similarity=0.106 Sum_probs=90.5
Q ss_pred hcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccccCC
Q 044237 36 RFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLP 115 (212)
Q Consensus 36 ~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~ 115 (212)
.+++|++|++++| .++.+.... ...++|++|+++++ .++.+ .....+++|++|+++++. ++.+.+
T Consensus 17 ~~~~L~~L~l~~n-~l~~i~~~~-------~~~~~L~~L~Ls~N-~l~~~-----~~l~~l~~L~~L~Ls~N~-l~~~~~ 81 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIPVIENLG-------ATLDQFDAIDFSDN-EIRKL-----DGFPLLRRLKTLLVNNNR-ICRIGE 81 (176)
T ss_dssp CTTSCEEEECTTS-CCCSCCCGG-------GGTTCCSEEECCSS-CCCEE-----CCCCCCSSCCEEECCSSC-CCEECS
T ss_pred CcCCceEEEeeCC-CCchhHHhh-------hcCCCCCEEECCCC-CCCcc-----cccccCCCCCEEECCCCc-ccccCc
Confidence 5678999999886 666542211 13459999999986 46654 123568899999999874 556544
Q ss_pred CCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccccccccccccccccCCccceeecCCCCC
Q 044237 116 SSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLDS 192 (212)
Q Consensus 116 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~ 192 (212)
.....+++|++|+++++. +..+........+++|+.|++.+++- ..+.... ......+|+|+.|++.+++.
T Consensus 82 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~----~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYR----LYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHH----HHHHHHCTTCSEETTEECCH
T ss_pred chhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHH----HHHHHHCCccceeCCCcCCH
Confidence 422678999999999884 55543222466889999999998863 2221100 00123678899988877653
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.47 E-value=6.2e-07 Score=67.43 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=17.1
Q ss_pred CCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEee
Q 044237 7 FPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCY 47 (212)
Q Consensus 7 ~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~ 47 (212)
+|...+.+|++|+++.+.+..++....++.+++|++|++++
T Consensus 23 ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~ 63 (192)
T 1w8a_A 23 IPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR 63 (192)
T ss_dssp CCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS
T ss_pred CccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCC
Confidence 33333445555555533333333210123455555555544
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.47 E-value=9e-07 Score=77.62 Aligned_cols=36 Identities=28% Similarity=0.308 Sum_probs=17.5
Q ss_pred CCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEee
Q 044237 7 FPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCY 47 (212)
Q Consensus 7 ~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~ 47 (212)
+|...+++|++|+++++.++.+| . .+++|++|++++
T Consensus 74 lp~~l~~~L~~L~Ls~N~l~~ip-~----~l~~L~~L~Ls~ 109 (571)
T 3cvr_A 74 LPDNLPPQITVLEITQNALISLP-E----LPASLEYLDACD 109 (571)
T ss_dssp CCSCCCTTCSEEECCSSCCSCCC-C----CCTTCCEEECCS
T ss_pred cCHhHcCCCCEEECcCCCCcccc-c----ccCCCCEEEccC
Confidence 33334455555555543444444 2 345555555555
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.44 E-value=1.3e-06 Score=65.79 Aligned_cols=125 Identities=11% Similarity=0.046 Sum_probs=89.6
Q ss_pred cEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCccCCC
Q 044237 16 KQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKLGPI 95 (212)
Q Consensus 16 k~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~ 95 (212)
++++.+++.+..+|.. -.++|++|+++++ .++.++.. ...+++|++|++++. +++.+.. .....
T Consensus 13 ~~l~~~~~~l~~ip~~----~~~~l~~L~L~~n-~i~~ip~~-------~~~l~~L~~L~Ls~N-~i~~i~~---~~f~~ 76 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG----IPRDVTELYLDGN-QFTLVPKE-------LSNYKHLTLIDLSNN-RISTLSN---QSFSN 76 (193)
T ss_dssp TEEECTTSCCSSCCSC----CCTTCCEEECCSS-CCCSCCGG-------GGGCTTCCEEECCSS-CCCCCCT---TTTTT
T ss_pred CEEEcCCCCCCcCCCC----CCCCCCEEECCCC-cCchhHHH-------hhcccCCCEEECCCC-cCCEeCH---hHccC
Confidence 5677776677888865 4479999999884 66655432 236889999999986 3555422 22356
Q ss_pred cCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccc
Q 044237 96 FQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECR 159 (212)
Q Consensus 96 l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 159 (212)
+++|++|+++++. ++.+.+.....+++|+.|+++++. ++.+.. .....+++|+.|++.+.+
T Consensus 77 l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 77 MTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGND-ISVVPE-GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC-CCBCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCC-CCeeCh-hhhhcCccccEEEeCCCC
Confidence 8899999999874 666656556778999999999864 655533 345678999999998643
No 122
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.43 E-value=1.1e-07 Score=70.69 Aligned_cols=39 Identities=8% Similarity=0.131 Sum_probs=16.7
Q ss_pred cccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCce
Q 044237 98 YLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIH 137 (212)
Q Consensus 98 ~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~ 137 (212)
.|+.|++++|. +++..-..+..+++|++|.+++|..+++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCH
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCH
Confidence 35555555554 3321111123345555555555554443
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.38 E-value=2.2e-06 Score=64.40 Aligned_cols=127 Identities=11% Similarity=0.078 Sum_probs=91.0
Q ss_pred cEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCccCCC
Q 044237 16 KQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKLGPI 95 (212)
Q Consensus 16 k~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~ 95 (212)
++++++++.+..+|.. -..+|++|.++++ .++.+.+.. ....+++|++|++++. +++.+. +.....
T Consensus 11 ~~l~~s~~~l~~ip~~----~~~~l~~L~l~~n-~i~~~~~~~-----~~~~l~~L~~L~Ls~N-~l~~~~---~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD----IPLHTTELLLNDN-ELGRISSDG-----LFGRLPHLVKLELKRN-QLTGIE---PNAFEG 76 (192)
T ss_dssp TEEECTTSCCSSCCSC----CCTTCSEEECCSC-CCCSBCCSC-----SGGGCTTCCEEECCSS-CCCCBC---TTTTTT
T ss_pred CEEEcCCCCcCcCccC----CCCCCCEEECCCC-cCCccCCcc-----ccccCCCCCEEECCCC-CCCCcC---HhHcCC
Confidence 6788887777888875 3359999999985 666554321 1236899999999986 455542 223356
Q ss_pred cCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccc
Q 044237 96 FQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECR 159 (212)
Q Consensus 96 l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~ 159 (212)
+++|++|+++++ .++.+.+.....+++|++|+++++. ++.+.+ .....+++|++|++.+.+
T Consensus 77 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 77 ASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMP-GSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSC-CCEECT-TSSTTCTTCCEEECTTCC
T ss_pred cccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCc-CCeeCH-HHhhcCCCCCEEEeCCCC
Confidence 889999999987 4566555546678999999999874 555533 345678999999998764
No 124
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.33 E-value=2.1e-07 Score=77.28 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=27.3
Q ss_pred ccCCccEEEEcCCCCce-----echHHHHhhcCCCcEEEEeecC
Q 044237 11 LFGSLKQLNIGGDDSAC-----FPIWNVLERFHSLEILILCYFS 49 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~i~~C~ 49 (212)
.+++|++|+++++.+.. +|.. ++.+++|++|++++|.
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~--l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDF--LSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHH--HHHCTTCCEEECCSSC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHH--HHhCCCCCEEECcCCC
Confidence 47899999999444433 4443 4689999999999873
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.27 E-value=4.2e-06 Score=73.37 Aligned_cols=145 Identities=21% Similarity=0.163 Sum_probs=89.7
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+| +.+++|++|+++.+.++.+|. +. . +|++|+++++ .++.++. .+++|+.|++++.. ++.+
T Consensus 94 ~ip-~~l~~L~~L~Ls~N~l~~ip~--l~-~--~L~~L~Ls~N-~l~~lp~----------~l~~L~~L~Ls~N~-l~~l 155 (571)
T 3cvr_A 94 SLP-ELPASLEYLDACDNRLSTLPE--LP-A--SLKHLDVDNN-QLTMLPE----------LPALLEYINADNNQ-LTML 155 (571)
T ss_dssp CCC-CCCTTCCEEECCSSCCSCCCC--CC-T--TCCEEECCSS-CCSCCCC----------CCTTCCEEECCSSC-CSCC
T ss_pred ccc-cccCCCCEEEccCCCCCCcch--hh-c--CCCEEECCCC-cCCCCCC----------cCccccEEeCCCCc-cCcC
Confidence 456 678999999999666666765 11 2 8999999885 6665432 36788888888753 5544
Q ss_pred cccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhc----CCCCcEEeeeccccc
Q 044237 86 CKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKT----LVQLVTVRMRECRAM 161 (212)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~----l~~L~~L~i~~c~~l 161 (212)
+. .+++|+.|+++++. ++.+ |. .. ++|+.|+++++ +++.++. ...+ .+.|+.|++.++. +
T Consensus 156 p~-------~l~~L~~L~Ls~N~-L~~l-p~-l~--~~L~~L~Ls~N-~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~-l 219 (571)
T 3cvr_A 156 PE-------LPTSLEVLSVRNNQ-LTFL-PE-LP--ESLEALDVSTN-LLESLPA--VPVRNHHSEETEIFFRCRENR-I 219 (571)
T ss_dssp CC-------CCTTCCEEECCSSC-CSCC-CC-CC--TTCCEEECCSS-CCSSCCC--CC--------CCEEEECCSSC-C
T ss_pred CC-------cCCCcCEEECCCCC-CCCc-ch-hh--CCCCEEECcCC-CCCchhh--HHHhhhcccccceEEecCCCc-c
Confidence 21 46778888888774 4443 33 22 78888888876 3554422 1111 1222788887763 3
Q ss_pred cccccccccccccccccCCccceeecCCCCC
Q 044237 162 TEVVINDKEGVEKEEIVFRKLKMLELRDLDS 192 (212)
Q Consensus 162 ~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp~ 192 (212)
..+... ...+++|+.|++.+.+-
T Consensus 220 ~~lp~~--------l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 220 THIPEN--------ILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CCCCGG--------GGGSCTTEEEECCSSSC
T ss_pred eecCHH--------HhcCCCCCEEEeeCCcC
Confidence 443221 12467778887777653
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.24 E-value=3.9e-06 Score=73.52 Aligned_cols=126 Identities=13% Similarity=0.140 Sum_probs=79.4
Q ss_pred CCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccccCCCC
Q 044237 38 HSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSS 117 (212)
Q Consensus 38 ~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~ 117 (212)
..|+.|+++++ .++.++. . ..+++|+.|++++. +++.++ .....+++|+.|+++++ .++.+ |.
T Consensus 441 ~~L~~L~Ls~n-~l~~lp~-~-------~~l~~L~~L~Ls~N-~l~~lp----~~~~~l~~L~~L~Ls~N-~l~~l-p~- 503 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTVLCH-L-------EQLLLVTHLDLSHN-RLRALP----PALAALRCLEVLQASDN-ALENV-DG- 503 (567)
T ss_dssp TTCSEEECTTS-CCSSCCC-G-------GGGTTCCEEECCSS-CCCCCC----GGGGGCTTCCEEECCSS-CCCCC-GG-
T ss_pred cCceEEEecCC-CCCCCcC-c-------cccccCcEeecCcc-cccccc----hhhhcCCCCCEEECCCC-CCCCC-cc-
Confidence 36788888774 6665443 2 25778888888875 455552 22356788888888876 34443 43
Q ss_pred cccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccccccccccccccccCCccceee
Q 044237 118 SVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLE 186 (212)
Q Consensus 118 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~ 186 (212)
+..+++|+.|+++++. ++.+..+.....+++|+.|+++++. +..++.... .....+|+|+.|.
T Consensus 504 l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~----~l~~~lp~L~~L~ 566 (567)
T 1dce_A 504 VANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQE----RLAEMLPSVSSIL 566 (567)
T ss_dssp GTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTT----HHHHHCTTCSEEE
T ss_pred cCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHH----HHHHHCcccCccC
Confidence 6778888999888763 5555313356778889999988875 333322110 0112478888875
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.12 E-value=2.3e-06 Score=77.13 Aligned_cols=110 Identities=16% Similarity=0.028 Sum_probs=71.3
Q ss_pred HHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccc
Q 044237 33 VLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLI 112 (212)
Q Consensus 33 ~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~ 112 (212)
.+..+++|+.|+++++ .+..++... ..+++|++|.|++. +++.++ .....+++|+.|+++++. ++.
T Consensus 219 ~~~~l~~L~~L~Ls~n-~l~~l~~~~-------~~l~~L~~L~Ls~N-~l~~lp----~~~~~l~~L~~L~Ls~N~-l~~ 284 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNL-QIFNISANI-------FKYDFLTRLYLNGN-SLTELP----AEIKNLSNLRVLDLSHNR-LTS 284 (727)
T ss_dssp ---CCCCCCEEECTTS-CCSCCCGGG-------GGCCSCSCCBCTTS-CCSCCC----GGGGGGTTCCEEECTTSC-CSS
T ss_pred hhccCCCCcEEECCCC-CCCCCChhh-------cCCCCCCEEEeeCC-cCcccC----hhhhCCCCCCEEeCcCCc-CCc
Confidence 3457778888888775 454443321 25778888888876 455442 223567888888888875 555
Q ss_pred cCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecccc
Q 044237 113 LLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRA 160 (212)
Q Consensus 113 l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~ 160 (212)
+ |..+..+++|++|+++++ .++.++. ....+++|+.|+++++.-
T Consensus 285 l-p~~~~~l~~L~~L~L~~N-~l~~lp~--~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 285 L-PAELGSCFQLKYFYFFDN-MVTTLPW--EFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp C-CSSGGGGTTCSEEECCSS-CCCCCCS--STTSCTTCCCEECTTSCC
T ss_pred c-ChhhcCCCCCCEEECCCC-CCCccCh--hhhcCCCccEEeCCCCcc
Confidence 4 544777888888888877 3555532 366788888888887753
No 128
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.10 E-value=6.2e-07 Score=74.46 Aligned_cols=13 Identities=23% Similarity=0.133 Sum_probs=8.9
Q ss_pred CCccceeecCCCC
Q 044237 179 FRKLKMLELRDLD 191 (212)
Q Consensus 179 ~p~L~~L~l~~cp 191 (212)
+++|++|.+.++.
T Consensus 273 ~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 273 NIGLQTLRLQYNE 285 (386)
T ss_dssp SCCCCEEECCSSC
T ss_pred CCCeEEEECcCCc
Confidence 5677777777664
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.10 E-value=3.5e-07 Score=69.06 Aligned_cols=128 Identities=13% Similarity=0.072 Sum_probs=84.1
Q ss_pred CCccEEEEc--CCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 13 GSLKQLNIG--GDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 13 ~~Lk~L~l~--~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
-.|+...+. ...++.+|.. ++.+++|++|+++++ .++.++ . ...+++|++|+++++ +++.+.
T Consensus 23 l~l~~~~l~~~~~~l~~l~~~--~~~l~~L~~L~ls~n-~l~~l~-~-------~~~l~~L~~L~l~~n-~l~~l~---- 86 (198)
T 1ds9_A 23 TEAEKVELHGMIPPIEKMDAT--LSTLKACKHLALSTN-NIEKIS-S-------LSGMENLRILSLGRN-LIKKIE---- 86 (198)
T ss_dssp TTCSEEECCBCCTTCCCCHHH--HHHTTTCSEEECSEE-EESCCC-C-------HHHHTTCCEEEEEEE-EECSCS----
T ss_pred cchheeEeccccCcHhhhhHH--HhcCCCCCEEECCCC-CCcccc-c-------cccCCCCCEEECCCC-Cccccc----
Confidence 345666665 2245556554 458899999999886 555533 1 225788999999876 355442
Q ss_pred ccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecccc
Q 044237 91 KLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRA 160 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~ 160 (212)
.....+++|+.|+++++ .++.+ |. ...+++|++|+++++. ++.+........+++|++|++.+++-
T Consensus 87 ~~~~~~~~L~~L~L~~N-~l~~l-~~-~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 87 NLDAVADTLEELWISYN-QIASL-SG-IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SHHHHHHHCSEEEEEEE-ECCCH-HH-HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred chhhcCCcCCEEECcCC-cCCcC-Cc-cccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 12234678999999987 45543 33 6678899999998874 44332223466788999999988853
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.08 E-value=1.9e-05 Score=64.08 Aligned_cols=102 Identities=11% Similarity=0.036 Sum_probs=51.9
Q ss_pred cCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCc-EEeeecccccccccccccccccc
Q 044237 96 FQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLV-TVRMRECRAMTEVVINDKEGVEK 174 (212)
Q Consensus 96 l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~-~L~i~~c~~l~~i~~~~~~~~~~ 174 (212)
+++|+.+++.++. ++.+.......+++|+.+.+.+ +++.+. .....++++|+ .+.+.+ .++.|...
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~--ni~~I~-~~aF~~~~~L~~~l~l~~--~l~~I~~~------- 291 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPH--NLKTIG-QRVFSNCGRLAGTLELPA--SVTAIEFG------- 291 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCT--TCCEEC-TTTTTTCTTCCEEEEECT--TCCEECTT-------
T ss_pred cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCc--ccceeh-HHHhhCChhccEEEEEcc--cceEEchh-------
Confidence 3455555555432 3333333334456666666655 255543 23445667777 777766 44444211
Q ss_pred ccccCCccceeecCCCCCCceecCCCccccCCCCccCC
Q 044237 175 EEIVFRKLKMLELRDLDSLTSFCSANYTFKFPSLQDLW 212 (212)
Q Consensus 175 ~~~~~p~L~~L~l~~cp~L~~~~~~~~~~~~p~L~~l~ 212 (212)
....+++|+.+.+.+ .+++.+..+. -...++|++||
T Consensus 292 aF~~c~~L~~l~l~~-n~i~~I~~~a-F~~~~~L~~ly 327 (329)
T 3sb4_A 292 AFMGCDNLRYVLATG-DKITTLGDEL-FGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTEEEEEECS-SCCCEECTTT-TCTTCCCCEEE
T ss_pred hhhCCccCCEEEeCC-CccCccchhh-hcCCcchhhhc
Confidence 112356777776532 3556665542 12356676653
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.07 E-value=3.8e-06 Score=75.70 Aligned_cols=106 Identities=16% Similarity=0.039 Sum_probs=82.6
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
.+++|+.|+++.+.+..+|.. .. .+++|++|+++++ .++.++... ..+++|+.|+|++.. ++.++
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~-~~-~l~~L~~L~Ls~N-~l~~lp~~~-------~~l~~L~~L~Ls~N~-l~~lp---- 286 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISAN-IF-KYDFLTRLYLNGN-SLTELPAEI-------KNLSNLRVLDLSHNR-LTSLP---- 286 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGG-GG-GCCSCSCCBCTTS-CCSCCCGGG-------GGGTTCCEEECTTSC-CSSCC----
T ss_pred cCCCCcEEECCCCCCCCCChh-hc-CCCCCCEEEeeCC-cCcccChhh-------hCCCCCCEEeCcCCc-CCccC----
Confidence 478899999996667788876 44 8999999999985 676555422 368999999999874 66653
Q ss_pred ccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCC
Q 044237 91 KLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCK 133 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~ 133 (212)
.....+++|++|+++++ .+..+ |..+..+++|+.|+++++.
T Consensus 287 ~~~~~l~~L~~L~L~~N-~l~~l-p~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDN-MVTTL-PWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SSGGGGTTCSEEECCSS-CCCCC-CSSTTSCTTCCCEECTTSC
T ss_pred hhhcCCCCCCEEECCCC-CCCcc-ChhhhcCCCccEEeCCCCc
Confidence 23357899999999998 56665 4447889999999999886
No 132
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.04 E-value=1.6e-05 Score=65.88 Aligned_cols=162 Identities=19% Similarity=0.123 Sum_probs=81.3
Q ss_pred ccCCccEEEEcCC-C----C-----ceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCccc
Q 044237 11 LFGSLKQLNIGGD-D----S-----ACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHY 80 (212)
Q Consensus 11 ~l~~Lk~L~l~~~-~----~-----~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~ 80 (212)
.|++|+.|.|.+. . . ..++ . ++..+|+|+.|.|++|.++. +.. . ..++|++|++..+.
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~-ll~~~P~L~~L~L~g~~~l~-l~~--------~-~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLS-P-VLDAMPLLNNLKIKGTNNLS-IGK--------K-PRPNLKSLEIISGG 204 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCH-H-HHHTCTTCCEEEEECCBTCB-CCS--------C-BCTTCSEEEEECSB
T ss_pred hcchhhheeecCcchhhcccccccccCHH-H-HHhcCCCCcEEEEeCCCCce-ecc--------c-cCCCCcEEEEecCC
Confidence 4778888888521 1 1 0122 2 44577888888888763332 111 1 25778888876543
Q ss_pred ccccccccCCccCCCcCcccEEEEecCcc-------ccccCCC-CcccCCCCCeEEEcCCCCCceecchhhH--hcCCCC
Q 044237 81 HLEQLCKQDSKLGPIFQYLEILKVYDCQS-------LLILLPS-SSVSFRNLTEIVAFGCKELIHLVTSSTA--KTLVQL 150 (212)
Q Consensus 81 ~L~~l~~~~~~~~~~l~~L~~L~i~~C~~-------L~~l~~~-~~~~l~~L~~L~i~~C~~L~~l~~~~~~--~~l~~L 150 (212)
+..-.... -....+++|+.|+++.+.+ ++.+.+. ....|++|+.|.+.+|.-- .......+ ..+++|
T Consensus 205 -l~~~~l~~-l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~-~~~~~~la~a~~~~~L 281 (362)
T 2ra8_A 205 -LPDSVVED-ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ-NVVVEMFLESDILPQL 281 (362)
T ss_dssp -CCHHHHHH-HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTH-HHHHHHHHHCSSGGGC
T ss_pred -CChHHHHH-HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCc-hHHHHHHHhCccCCCC
Confidence 22100000 0012577888888764221 2221111 0134788888888877532 11111111 246788
Q ss_pred cEEeeeccccccccccccccccccccccCCccceeecCCCC
Q 044237 151 VTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLD 191 (212)
Q Consensus 151 ~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp 191 (212)
++|+++.+ .+...... ........+++|++|++++|.
T Consensus 282 ~~LdLs~n-~L~d~G~~---~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 282 ETMDISAG-VLTDEGAR---LLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SEEECCSS-CCBHHHHH---HHHTTHHHHTTCSEEECCSBB
T ss_pred CEEECCCC-CCChHHHH---HHHhhcccCCcceEEECCCCc
Confidence 88888653 33221000 000111357888888887763
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.04 E-value=1.2e-06 Score=74.12 Aligned_cols=92 Identities=13% Similarity=-0.002 Sum_probs=42.8
Q ss_pred CCcCcccEEEEecCccccccCCCC-----cccCCCCCeEEEcCCCCCceecc---hhhHhcCCCCcEEeeeccccccccc
Q 044237 94 PIFQYLEILKVYDCQSLLILLPSS-----SVSFRNLTEIVAFGCKELIHLVT---SSTAKTLVQLVTVRMRECRAMTEVV 165 (212)
Q Consensus 94 ~~l~~L~~L~i~~C~~L~~l~~~~-----~~~l~~L~~L~i~~C~~L~~l~~---~~~~~~l~~L~~L~i~~c~~l~~i~ 165 (212)
..+++|++|+++++. +....+.. ....++|++|++++|. +..... ......+++|++|++.++. +....
T Consensus 110 ~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~ 186 (461)
T 1z7x_W 110 RTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNND-INEAG 186 (461)
T ss_dssp TSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHH
T ss_pred ccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHH
Confidence 345666666666654 22110000 0113457777777663 332111 1123445777777777765 22110
Q ss_pred cccccccccccccCCccceeecCCC
Q 044237 166 INDKEGVEKEEIVFRKLKMLELRDL 190 (212)
Q Consensus 166 ~~~~~~~~~~~~~~p~L~~L~l~~c 190 (212)
...- . ..-....++|++|++.+|
T Consensus 187 ~~~l-~-~~l~~~~~~L~~L~L~~n 209 (461)
T 1z7x_W 187 VRVL-C-QGLKDSPCQLEALKLESC 209 (461)
T ss_dssp HHHH-H-HHHHHSCCCCCEEECTTS
T ss_pred HHHH-H-HHHhcCCCCceEEEccCC
Confidence 0000 0 000012568888888888
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.02 E-value=1e-06 Score=74.47 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=10.9
Q ss_pred CCccceeecCCCCCCce
Q 044237 179 FRKLKMLELRDLDSLTS 195 (212)
Q Consensus 179 ~p~L~~L~l~~cp~L~~ 195 (212)
+++|++|++.+| .++.
T Consensus 255 ~~~L~~L~L~~n-~l~~ 270 (461)
T 1z7x_W 255 SSRLRTLWIWEC-GITA 270 (461)
T ss_dssp TCCCCEEECTTS-CCCH
T ss_pred CCCceEEECcCC-CCCH
Confidence 577788888777 4443
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.98 E-value=1.5e-05 Score=58.91 Aligned_cols=102 Identities=15% Similarity=0.060 Sum_probs=69.4
Q ss_pred cEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCccCCC
Q 044237 16 KQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKLGPI 95 (212)
Q Consensus 16 k~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~ 95 (212)
+.++++.+.+..+|.. -.++|++|+++++ .++.+++. ....+++|++|++++. +++.+.. .....
T Consensus 15 ~~l~~~~n~l~~iP~~----~~~~L~~L~Ls~N-~l~~~~~~------~~~~l~~L~~L~Ls~N-~l~~i~~---~~~~~ 79 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAG----IPTDKQRLWLNNN-QITKLEPG------VFDHLVNLQQLYFNSN-KLTAIPT---GVFDK 79 (174)
T ss_dssp SEEECCSSCCSSCCSC----CCTTCSEEECCSS-CCCCCCTT------TTTTCTTCCEEECCSS-CCCCCCT---TTTTT
T ss_pred cEEEeCCCCCCccCCC----cCCCCcEEEeCCC-CccccCHH------HhcCCcCCCEEECCCC-CCCccCh---hHhCC
Confidence 5677776667777765 3478888888874 66655432 1225788888888876 5666532 12246
Q ss_pred cCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCC
Q 044237 96 FQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCK 133 (212)
Q Consensus 96 l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~ 133 (212)
+++|+.|++++. .++.+.+.....+++|++|++++.+
T Consensus 80 l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 80 LTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCCC
Confidence 788899998875 5555555446678899999998754
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.95 E-value=2.2e-05 Score=68.82 Aligned_cols=158 Identities=19% Similarity=0.203 Sum_probs=100.6
Q ss_pred HHhhcCCCcEEEEeecCCcceecccccccccccc--ccccccEEecCcccccccccccCCccCCCcCcccEEEEecCccc
Q 044237 33 VLERFHSLEILILCYFSFHEEVFSMEGCLEKHVG--KLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSL 110 (212)
Q Consensus 33 ~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~--~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L 110 (212)
.++.+++|+.|+...+..+..+....- ...... ....|+.|.+++. +++.++ . ...+++|+.|+++++ .+
T Consensus 404 ~l~~l~~L~~L~~l~~n~~~~L~~l~l-~~n~i~~l~~~~L~~L~Ls~n-~l~~lp----~-~~~l~~L~~L~Ls~N-~l 475 (567)
T 1dce_A 404 TLQYFSTLKAVDPMRAAYLDDLRSKFL-LENSVLKMEYADVRVLHLAHK-DLTVLC----H-LEQLLLVTHLDLSHN-RL 475 (567)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHH-HHHHHHHHHHTTCSEEECTTS-CCSSCC----C-GGGGTTCCEEECCSS-CC
T ss_pred HHHHHHhcccCcchhhcccchhhhhhh-hcccccccCccCceEEEecCC-CCCCCc----C-ccccccCcEeecCcc-cc
Confidence 346788888887322233322211000 000000 1346899999986 566653 2 357899999999997 45
Q ss_pred cccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeeccccccccccccccccccccccCCccceeecCCC
Q 044237 111 LILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMRECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDL 190 (212)
Q Consensus 111 ~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~c 190 (212)
+.+ |..+..+++|+.|+++++. ++.++ ....+++|++|+++++. +..+... .....+++|+.|.+.+.
T Consensus 476 ~~l-p~~~~~l~~L~~L~Ls~N~-l~~lp---~l~~l~~L~~L~Ls~N~-l~~~~~p------~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 476 RAL-PPALAALRCLEVLQASDNA-LENVD---GVANLPRLQELLLCNNR-LQQSAAI------QPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp CCC-CGGGGGCTTCCEEECCSSC-CCCCG---GGTTCSSCCEEECCSSC-CCSSSTT------GGGGGCTTCCEEECTTS
T ss_pred ccc-chhhhcCCCCCEEECCCCC-CCCCc---ccCCCCCCcEEECCCCC-CCCCCCc------HHHhcCCCCCEEEecCC
Confidence 554 5558889999999999874 55542 46789999999999874 4444200 11236899999999987
Q ss_pred CCCceecCCCc--cccCCCCccC
Q 044237 191 DSLTSFCSANY--TFKFPSLQDL 211 (212)
Q Consensus 191 p~L~~~~~~~~--~~~~p~L~~l 211 (212)
+ ++.+++... ...+|+|+.|
T Consensus 544 ~-l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 544 S-LCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp G-GGGSSSCTTHHHHHCTTCSEE
T ss_pred c-CCCCccHHHHHHHHCcccCcc
Confidence 5 565554321 2237888876
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.91 E-value=7.1e-07 Score=67.30 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=85.9
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCC
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDS 90 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~ 90 (212)
.+++|++|+++++.+..+| . + +.+++|++|++++| .++.++... ..+++|++|+++++ +++.+.
T Consensus 46 ~l~~L~~L~ls~n~l~~l~-~-~-~~l~~L~~L~l~~n-~l~~l~~~~-------~~~~~L~~L~L~~N-~l~~l~---- 109 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKIS-S-L-SGMENLRILSLGRN-LIKKIENLD-------AVADTLEELWISYN-QIASLS---- 109 (198)
T ss_dssp HTTTCSEEECSEEEESCCC-C-H-HHHTTCCEEEEEEE-EECSCSSHH-------HHHHHCSEEEEEEE-ECCCHH----
T ss_pred cCCCCCEEECCCCCCcccc-c-c-ccCCCCCEEECCCC-Ccccccchh-------hcCCcCCEEECcCC-cCCcCC----
Confidence 4889999999955566677 3 3 58999999999996 555443321 24689999999987 566542
Q ss_pred ccCCCcCcccEEEEecCccccccCC-CCcccCCCCCeEEEcCCCCCceecc---------hhhHhcCCCCcEEe
Q 044237 91 KLGPIFQYLEILKVYDCQSLLILLP-SSSVSFRNLTEIVAFGCKELIHLVT---------SSTAKTLVQLVTVR 154 (212)
Q Consensus 91 ~~~~~l~~L~~L~i~~C~~L~~l~~-~~~~~l~~L~~L~i~~C~~L~~l~~---------~~~~~~l~~L~~L~ 154 (212)
....+++|+.|+++++. ++.+.+ .....+++|++|++++++ +....+ ......+++|+.|+
T Consensus 110 -~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp -HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred -ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 12467899999999874 333211 125578999999999885 322211 11256788888886
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.89 E-value=2.6e-05 Score=57.29 Aligned_cols=102 Identities=17% Similarity=0.120 Sum_probs=69.6
Q ss_pred ccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCccCC
Q 044237 15 LKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKLGP 94 (212)
Q Consensus 15 Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~ 94 (212)
.++++++++.++.+|.. -.++|++|+++++ .++.+.+. ....+++|++|++++. +++.+.. ....
T Consensus 11 ~~~l~~s~n~l~~ip~~----~~~~l~~L~L~~N-~i~~~~~~------~~~~l~~L~~L~Ls~N-~l~~l~~---~~f~ 75 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTG----IPTTTQVLYLYDN-QITKLEPG------VFDRLTQLTRLDLDNN-QLTVLPA---GVFD 75 (170)
T ss_dssp TTEEECTTSCCSSCCSC----CCTTCSEEECCSS-CCCCCCTT------TTTTCTTCSEEECCSS-CCCCCCT---TTTT
T ss_pred CCEEEeCCCCcCccCcc----CCCCCcEEEcCCC-cCCccChh------hhcCcccCCEEECCCC-CcCccCh---hhcc
Confidence 46777776677777765 3478888888874 66655332 1225788888888875 4665532 2224
Q ss_pred CcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCC
Q 044237 95 IFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGC 132 (212)
Q Consensus 95 ~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C 132 (212)
.+++|++|++++. .++.+.+.....+++|++|++++.
T Consensus 76 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 76 KLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 6788899998886 466655544667889999999874
No 139
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.88 E-value=4.9e-06 Score=68.52 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=22.5
Q ss_pred CCccEEEEcCCCCceechHHHH---hhc-CCCcEEEEeec
Q 044237 13 GSLKQLNIGGDDSACFPIWNVL---ERF-HSLEILILCYF 48 (212)
Q Consensus 13 ~~Lk~L~l~~~~~~~~p~~~~~---~~l-~~L~~L~i~~C 48 (212)
++|++|+++++.+...+...+. ..+ ++|++|++++|
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 119 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN 119 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC
Confidence 7888888884444433332122 233 78888888886
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.88 E-value=5e-05 Score=56.04 Aligned_cols=84 Identities=13% Similarity=0.067 Sum_probs=45.6
Q ss_pred cccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcC
Q 044237 68 LAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTL 147 (212)
Q Consensus 68 l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l 147 (212)
.++|++|++++. +++.+. +.....+++|++|++++. +++.+.+.....+++|++|+++++ +++.+.. .....+
T Consensus 32 ~~~L~~L~Ls~N-~l~~~~---~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~l 104 (174)
T 2r9u_A 32 PTDKQRLWLNNN-QITKLE---PGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPR-GAFDNL 104 (174)
T ss_dssp CTTCSEEECCSS-CCCCCC---TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTC
T ss_pred CCCCcEEEeCCC-CccccC---HHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeCH-HHhccc
Confidence 356677776654 244331 112245666777777665 455544432345667777777664 3444422 234556
Q ss_pred CCCcEEeeecc
Q 044237 148 VQLVTVRMREC 158 (212)
Q Consensus 148 ~~L~~L~i~~c 158 (212)
++|+.|++.+.
T Consensus 105 ~~L~~L~L~~N 115 (174)
T 2r9u_A 105 KSLTHIYLYNN 115 (174)
T ss_dssp TTCSEEECCSS
T ss_pred cCCCEEEeCCC
Confidence 66777776654
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.85 E-value=5.8e-05 Score=55.40 Aligned_cols=84 Identities=14% Similarity=0.111 Sum_probs=47.6
Q ss_pred cccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcC
Q 044237 68 LAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTL 147 (212)
Q Consensus 68 l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l 147 (212)
+++|++|++++. +++.+. +.....+++|++|++++. +++.+.+.....+++|++|+++++ +++.+.+ .....+
T Consensus 29 ~~~l~~L~L~~N-~i~~~~---~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~-~~~~~l 101 (170)
T 3g39_A 29 PTTTQVLYLYDN-QITKLE---PGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPR-GAFDNL 101 (170)
T ss_dssp CTTCSEEECCSS-CCCCCC---TTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTC
T ss_pred CCCCcEEEcCCC-cCCccC---hhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCH-HHhcCC
Confidence 456777777664 344432 112245667777777765 355544443346677777777665 3544432 234566
Q ss_pred CCCcEEeeecc
Q 044237 148 VQLVTVRMREC 158 (212)
Q Consensus 148 ~~L~~L~i~~c 158 (212)
++|++|++.+.
T Consensus 102 ~~L~~L~L~~N 112 (170)
T 3g39_A 102 KSLTHIWLLNN 112 (170)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEEeCCC
Confidence 77777777654
No 142
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.77 E-value=8.1e-06 Score=67.20 Aligned_cols=39 Identities=10% Similarity=-0.044 Sum_probs=25.7
Q ss_pred cCCccEEEEcCCCCceech----HHHHhhcC-CCcEEEEeecCCcc
Q 044237 12 FGSLKQLNIGGDDSACFPI----WNVLERFH-SLEILILCYFSFHE 52 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~~p~----~~~~~~l~-~L~~L~i~~C~~l~ 52 (212)
.++|++|+++++.+...+. . .+..++ +|++|++++| .++
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~N-~l~ 64 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQ-AFANTPASVTSLNLSGN-SLG 64 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHH-HHHTCCTTCCEEECCSS-CGG
T ss_pred CCCceEEEccCCCCChHHHHHHHH-HHHhCCCceeEEECcCC-CCC
Confidence 3458888888555555554 3 345677 7888888886 444
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.75 E-value=0.00022 Score=57.74 Aligned_cols=81 Identities=10% Similarity=-0.007 Sum_probs=55.5
Q ss_pred cccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCC-eEEEcCCCCCceecchhhHhc
Q 044237 68 LAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLT-EIVAFGCKELIHLVTSSTAKT 146 (212)
Q Consensus 68 l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~-~L~i~~C~~L~~l~~~~~~~~ 146 (212)
+++|+++++.+. +++.+... ....+++|+++++.+ +++.+.+.....+++|+ .+.+.+ +++.+.. ....+
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~---aF~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~-~aF~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDF---TFAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEF-GAFMG 295 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTT---TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECT-TTTTT
T ss_pred cCCCeEEECCCC-CcceecHh---hhhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEch-hhhhC
Confidence 456666666653 25555332 234678899999987 37776555456678898 999987 6777643 45678
Q ss_pred CCCCcEEeeec
Q 044237 147 LVQLVTVRMRE 157 (212)
Q Consensus 147 l~~L~~L~i~~ 157 (212)
+++|+.+.+.+
T Consensus 296 c~~L~~l~l~~ 306 (329)
T 3sb4_A 296 CDNLRYVLATG 306 (329)
T ss_dssp CTTEEEEEECS
T ss_pred CccCCEEEeCC
Confidence 88999988754
No 144
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.62 E-value=6.7e-05 Score=62.06 Aligned_cols=135 Identities=14% Similarity=0.038 Sum_probs=81.4
Q ss_pred ccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccc-------cc
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYH-------LE 83 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~-------L~ 83 (212)
.+|+|+.|++.++....++.. .+++|++|.+..| .+.. .+........+|+|++|.|+...+ ++
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~~----~~~~L~~L~L~~~-~l~~----~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGKK----PRPNLKSLEIISG-GLPD----SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCSC----BCTTCSEEEEECS-BCCH----HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred cCCCCcEEEEeCCCCceeccc----cCCCCcEEEEecC-CCCh----HHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 478999999984322334432 5889999999876 3321 110001112589999999853211 21
Q ss_pred cccccCCccCCCcCcccEEEEecCccccc----cCCCCcccCCCCCeEEEcCCCCCceecchh---hHhcCCCCcEEeee
Q 044237 84 QLCKQDSKLGPIFQYLEILKVYDCQSLLI----LLPSSSVSFRNLTEIVAFGCKELIHLVTSS---TAKTLVQLVTVRMR 156 (212)
Q Consensus 84 ~l~~~~~~~~~~l~~L~~L~i~~C~~L~~----l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~---~~~~l~~L~~L~i~ 156 (212)
.+... -....+++|+.|.+.+|.--.. ++. ...+++|++|+++.+ .+....... ....+++|+.|+++
T Consensus 241 ~l~~~--l~~~~~p~Lr~L~L~~~~i~~~~~~~la~--a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 241 VFRPL--FSKDRFPNLKWLGIVDAEEQNVVVEMFLE--SDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp GTGGG--SCTTTCTTCCEEEEESCTTHHHHHHHHHH--CSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred HHHHH--HhcCCCCCcCEEeCCCCCCchHHHHHHHh--CccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECC
Confidence 11100 0113589999999999864321 111 235789999999764 465431111 22567999999999
Q ss_pred ccc
Q 044237 157 ECR 159 (212)
Q Consensus 157 ~c~ 159 (212)
+|.
T Consensus 316 ~n~ 318 (362)
T 2ra8_A 316 YNY 318 (362)
T ss_dssp SBB
T ss_pred CCc
Confidence 884
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.47 E-value=0.00054 Score=55.66 Aligned_cols=86 Identities=17% Similarity=0.079 Sum_probs=57.4
Q ss_pred ccccccEEecCcccccccccccCCccCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhc
Q 044237 67 KLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKT 146 (212)
Q Consensus 67 ~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~ 146 (212)
.+++|++|+|++..+++.+... ....+++|+.|++++. +++.+.+.....+++|++|++++. +|+.+.+ .....
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~---~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~ 102 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELR---DLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESLSW-KTVQG 102 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGG---GSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCCCS-TTTCS
T ss_pred CCCCeeEEEccCCCCCCCcChh---HhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC-ccceeCH-HHccc
Confidence 4667888888876667766322 2346788888888886 577766654567888888888875 4655533 22333
Q ss_pred CCCCcEEeeeccc
Q 044237 147 LVQLVTVRMRECR 159 (212)
Q Consensus 147 l~~L~~L~i~~c~ 159 (212)
++ |+.|++.+..
T Consensus 103 ~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 103 LS-LQELVLSGNP 114 (347)
T ss_dssp CC-CCEEECCSSC
T ss_pred CC-ceEEEeeCCC
Confidence 33 8888887643
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.35 E-value=0.0004 Score=56.47 Aligned_cols=102 Identities=17% Similarity=0.049 Sum_probs=71.7
Q ss_pred EEEEcCC-CCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCccCCC
Q 044237 17 QLNIGGD-DSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKLGPI 95 (212)
Q Consensus 17 ~L~l~~~-~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~ 95 (212)
.++..+. .++.+|. +..+++|++|+++++..++.+++. ....+++|+.|+|++. +|+.+.. .....
T Consensus 12 ~v~~~~~n~l~~ip~---l~~~~~L~~L~l~~~n~l~~~~~~------~~~~l~~L~~L~l~~N-~l~~~~~---~~~~~ 78 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH---LPGAENLTELYIENQQHLQHLELR------DLRGLGELRNLTIVKS-GLRFVAP---DAFHF 78 (347)
T ss_dssp CEECCSSCCCTTTTT---SCSCSCCSEEECCSCSSCCEECGG------GSCSCCCCSEEECCSS-CCCEECT---TGGGS
T ss_pred EEEcCCCCCCCccCC---CCCCCCeeEEEccCCCCCCCcChh------HhccccCCCEEECCCC-ccceeCH---HHhcC
Confidence 3455544 6777775 358889999999876788877642 1236899999999986 5776632 23357
Q ss_pred cCcccEEEEecCccccccCCCCcccCCCCCeEEEcCCC
Q 044237 96 FQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVAFGCK 133 (212)
Q Consensus 96 l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i~~C~ 133 (212)
+++|+.|++++. +++.+.+. .....+|+.|++.+.+
T Consensus 79 l~~L~~L~l~~N-~l~~~~~~-~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 79 TPRLSRLNLSFN-ALESLSWK-TVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCEEECCSS-CCSCCCST-TTCSCCCCEEECCSSC
T ss_pred CcCCCEEeCCCC-ccceeCHH-HcccCCceEEEeeCCC
Confidence 899999999985 56666554 3333349999998753
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.13 E-value=4.4e-05 Score=63.36 Aligned_cols=167 Identities=16% Similarity=0.103 Sum_probs=89.1
Q ss_pred ccCCccEEEEcCCCCceechHHHHhh-----cCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccc
Q 044237 11 LFGSLKQLNIGGDDSACFPIWNVLER-----FHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQL 85 (212)
Q Consensus 11 ~l~~Lk~L~l~~~~~~~~p~~~~~~~-----l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l 85 (212)
.+++|++|+++++.+...... .+.. .++|++|++++| .+.. .+. ..-...+++|++|+++++ ++...
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~-~l~~~L~~~~~~L~~L~Ls~n-~l~~----~~~-~~l~~~L~~L~~L~Ls~n-~l~~~ 141 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCT-VVAAVLGSGRHALDEVNLASC-QLDP----AGL-RTLLPVFLRARKLGLQLN-SLGPE 141 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHH-HHHHHHSSCSSCEEEEECTTC-CCCH----HHH-HHTHHHHHTEEEEECCSS-CCCHH
T ss_pred HHhhCCEEEecCCCCCHHHHH-HHHHHHhhCCCCceEEEecCC-CCCH----HHH-HHHHHHHHhccHhhcCCC-CCCHH
Confidence 357899999984444432222 1212 268999999887 3321 110 000124668889998887 34322
Q ss_pred cccCCc-cC-CCcCcccEEEEecCcccccc----CCCCcccCCCCCeEEEcCCCCCceecc---hhhHhcCCCCcEEeee
Q 044237 86 CKQDSK-LG-PIFQYLEILKVYDCQSLLIL----LPSSSVSFRNLTEIVAFGCKELIHLVT---SSTAKTLVQLVTVRMR 156 (212)
Q Consensus 86 ~~~~~~-~~-~~l~~L~~L~i~~C~~L~~l----~~~~~~~l~~L~~L~i~~C~~L~~l~~---~~~~~~l~~L~~L~i~ 156 (212)
...... .. ...++|++|++++|. +.+. +...+...++|++|++++|. +..... .......++|++|+++
T Consensus 142 ~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 142 ACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp HHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred HHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECC
Confidence 110000 00 134678999999884 3321 11113456789999998876 433211 1123456789999998
Q ss_pred ccccccccccccccccccccccCCccceeecCCCC
Q 044237 157 ECRAMTEVVINDKEGVEKEEIVFRKLKMLELRDLD 191 (212)
Q Consensus 157 ~c~~l~~i~~~~~~~~~~~~~~~p~L~~L~l~~cp 191 (212)
+|.- ...... .........++|++|++.+++
T Consensus 220 ~N~i-~~~g~~---~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 220 YNGA-GDTAAL---ALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp SSCC-CHHHHH---HHHHHHHHCSSCCEEECTTSS
T ss_pred CCCC-CHHHHH---HHHHHHHhCCCCCEEeccCCC
Confidence 8742 111000 000011235788888888774
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.06 E-value=0.011 Score=49.36 Aligned_cols=32 Identities=6% Similarity=-0.055 Sum_probs=16.6
Q ss_pred CccEEEEcCCCCceechHHHHhhcCCCcEEEEee
Q 044237 14 SLKQLNIGGDDSACFPIWNVLERFHSLEILILCY 47 (212)
Q Consensus 14 ~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~ 47 (212)
+|+.+.+.. .+..++.. .+..+++|+.+.+.+
T Consensus 158 ~L~~i~lp~-~l~~I~~~-aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKED-IFYYCYNLKKADLSK 189 (401)
T ss_dssp CCCEEECCT-TCCEECSS-TTTTCTTCCEEECTT
T ss_pred CceEEEeCC-CccEehHH-HhhCcccCCeeecCC
Confidence 355555542 34444443 344666666666654
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.99 E-value=0.011 Score=49.35 Aligned_cols=36 Identities=3% Similarity=0.048 Sum_probs=19.2
Q ss_pred CccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCccee
Q 044237 14 SLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEV 54 (212)
Q Consensus 14 ~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i 54 (212)
+|+.+.+..+ ++.++.. .+.. .+|+.+.+.+ +++.+
T Consensus 136 ~L~~i~l~~~-i~~I~~~-aF~~-~~L~~i~lp~--~l~~I 171 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDM-AFFN-STVQEIVFPS--TLEQL 171 (401)
T ss_dssp CCSEEECCTT-CCEECTT-TTTT-CCCCEEECCT--TCCEE
T ss_pred CccEEEeCCC-ccEECHH-hcCC-CCceEEEeCC--CccEe
Confidence 5666666532 5555554 3333 3677777653 44443
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.35 E-value=0.00024 Score=58.92 Aligned_cols=142 Identities=13% Similarity=-0.059 Sum_probs=82.2
Q ss_pred CCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccC-Cc
Q 044237 13 GSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQD-SK 91 (212)
Q Consensus 13 ~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~-~~ 91 (212)
.+|++|+++++.+..-....+...+++|++|++++| .+...... .+...-....++|++|+++++. +....... ..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~-~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~ 177 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACK-DLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLME 177 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHH-HHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHH-HHHHHHHhcCCccceeeCCCCC-CChHHHHHHHH
Confidence 689999999444432111113346789999999997 44321100 0000000135789999999984 44321100 00
Q ss_pred cCCCcCcccEEEEecCcccccc----CCCCcccCCCCCeEEEcCCCCCceecchh---hHhcCCCCcEEeeeccc
Q 044237 92 LGPIFQYLEILKVYDCQSLLIL----LPSSSVSFRNLTEIVAFGCKELIHLVTSS---TAKTLVQLVTVRMRECR 159 (212)
Q Consensus 92 ~~~~l~~L~~L~i~~C~~L~~l----~~~~~~~l~~L~~L~i~~C~~L~~l~~~~---~~~~l~~L~~L~i~~c~ 159 (212)
.....++|++|++++|. +.+. +...+...++|+.|++++|. +....... .....++|++|++.++.
T Consensus 178 ~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 11346789999999985 3321 11113456799999999985 43321111 23356899999999985
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=92.78 E-value=0.11 Score=40.89 Aligned_cols=65 Identities=22% Similarity=0.040 Sum_probs=33.6
Q ss_pred hhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCccCCCcCcccEEEEecCc
Q 044237 35 ERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKVYDCQ 108 (212)
Q Consensus 35 ~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i~~C~ 108 (212)
..+++|+.|++++ ..+..+..... ....+++|+.|+|++- +++.+.. ......+ +|++|.+++.+
T Consensus 167 ~~l~~L~~L~Ls~-N~l~~l~~l~~----~~~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSN-NRLYRLDDMSS----IVQKAPNLKILNLSGN-ELKSERE--LDKIKGL-KLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTT-SCCCCCGGGTT----HHHHSTTCCEEECTTS-CCCSGGG--GGGGTTS-CCSEEECTTST
T ss_pred hhCCCCCEEECCC-CCCCCCccchh----HHhhCCCCCEEECCCC-ccCCchh--hhhcccC-CcceEEccCCc
Confidence 4677777777776 35554322110 1124777777777652 2333211 0011122 77777777754
No 152
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.11 E-value=0.16 Score=35.23 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=23.9
Q ss_pred CCCccccCCccEEEEcCCCCceechHHHHhhcCCCcEEEEee
Q 044237 6 DFPQHLFGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCY 47 (212)
Q Consensus 6 ~~p~~~l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~ 47 (212)
.+|.+...+|++|+++.+.++.+|.. .+..+++|++|.+.+
T Consensus 24 ~vP~~lp~~l~~L~Ls~N~l~~l~~~-~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 24 SLPTAFPVDTTELVLTGNNLTALPPG-LLDALPALRTAHLGA 64 (130)
T ss_dssp TSCSCCCTTCSEEECTTSCCSSCCTT-TGGGCTTCCEEECCS
T ss_pred cCCCCCCcCCCEEECCCCcCCccChh-hhhhccccCEEEecC
Confidence 34444445666666665556666655 455666666666654
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=89.58 E-value=0.35 Score=37.97 Aligned_cols=12 Identities=25% Similarity=0.149 Sum_probs=6.4
Q ss_pred cCCCCCeEEEcC
Q 044237 120 SFRNLTEIVAFG 131 (212)
Q Consensus 120 ~l~~L~~L~i~~ 131 (212)
.+++|+.|++++
T Consensus 194 ~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 194 KAPNLKILNLSG 205 (267)
T ss_dssp HSTTCCEEECTT
T ss_pred hCCCCCEEECCC
Confidence 455555555544
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=85.54 E-value=0.14 Score=37.60 Aligned_cols=17 Identities=18% Similarity=-0.093 Sum_probs=10.5
Q ss_pred hhcCCCcEEEEeecCCc
Q 044237 35 ERFHSLEILILCYFSFH 51 (212)
Q Consensus 35 ~~l~~L~~L~i~~C~~l 51 (212)
...++|++|++++|..+
T Consensus 33 ~~~~~L~~L~L~~n~~i 49 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNI 49 (185)
T ss_dssp TTCTTCCEEECTTCTTC
T ss_pred hcCCCCCEEEecCCCCC
Confidence 45667777777765333
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=84.26 E-value=1.9 Score=35.17 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=19.5
Q ss_pred cCCccEEEEcCCCCceechHHHHhhcCCCcEEEEe
Q 044237 12 FGSLKQLNIGGDDSACFPIWNVLERFHSLEILILC 46 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~ 46 (212)
+.+|+.+.+. ..++.++.. .+..+++|+.+.+.
T Consensus 70 c~~L~~i~lp-~~i~~I~~~-aF~~c~~L~~i~lp 102 (394)
T 4fs7_A 70 CRKVTEIKIP-STVREIGEF-AFENCSKLEIINIP 102 (394)
T ss_dssp CTTEEEEECC-TTCCEECTT-TTTTCTTCCEECCC
T ss_pred CCCceEEEeC-CCccCcchh-HhhCCCCCcEEEeC
Confidence 3456666664 335555554 45567777777764
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=83.99 E-value=8.6 Score=31.21 Aligned_cols=11 Identities=18% Similarity=0.144 Sum_probs=5.0
Q ss_pred hcCCCCcEEee
Q 044237 145 KTLVQLVTVRM 155 (212)
Q Consensus 145 ~~l~~L~~L~i 155 (212)
.++.+|+.+.|
T Consensus 331 ~~C~~L~~i~i 341 (394)
T 4gt6_A 331 AGCEQLERIAI 341 (394)
T ss_dssp TTCTTCCEEEE
T ss_pred hCCCCCCEEEE
Confidence 34444444444
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=82.68 E-value=7 Score=31.76 Aligned_cols=34 Identities=15% Similarity=0.016 Sum_probs=21.2
Q ss_pred cCCccEEEEcCCCCceechHHHHhhcCCCcEEEEee
Q 044237 12 FGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCY 47 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~ 47 (212)
..+|+.+.+... ...+... ....+.+|+.+.+..
T Consensus 229 ~~~l~~i~ip~~-~~~i~~~-~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 229 KTGVKNIIIPDS-FTELGKS-VFYGCTDLESISIQN 262 (394)
T ss_dssp TCCCCEEEECTT-CCEECSS-TTTTCSSCCEEEECC
T ss_pred cCCCceEEECCC-ceecccc-cccccccceeEEcCC
Confidence 457888877632 3344443 345778888888754
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=82.61 E-value=6.1 Score=32.12 Aligned_cols=115 Identities=8% Similarity=0.046 Sum_probs=65.4
Q ss_pred CceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCccCCCcCcccEEEE
Q 044237 25 SACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSKLGPIFQYLEILKV 104 (212)
Q Consensus 25 ~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~l~~L~~L~i 104 (212)
...+... .+..+.+|+.+.+.+ .+..+.. ..-...++|+++.+.. +++.+.... ...+.+|+.+.|
T Consensus 253 v~~i~~~-aF~~c~~L~~i~lp~--~~~~I~~------~aF~~c~~L~~i~l~~--~i~~I~~~a---F~~c~~L~~i~l 318 (394)
T 4gt6_A 253 VARIETH-AFDSCAYLASVKMPD--SVVSIGT------GAFMNCPALQDIEFSS--RITELPESV---FAGCISLKSIDI 318 (394)
T ss_dssp EEEECTT-TTTTCSSCCEEECCT--TCCEECT------TTTTTCTTCCEEECCT--TCCEECTTT---TTTCTTCCEEEC
T ss_pred ceEcccc-eeeecccccEEeccc--ccceecC------cccccccccccccCCC--cccccCcee---ecCCCCcCEEEe
Confidence 3334333 344677788777643 3333321 1112456788877753 556664332 234677888877
Q ss_pred ecCccccccCCCCcccCCCCCeEEEcCCCCCceecchhhHhcCCCCcEEeeecc
Q 044237 105 YDCQSLLILLPSSSVSFRNLTEIVAFGCKELIHLVTSSTAKTLVQLVTVRMREC 158 (212)
Q Consensus 105 ~~C~~L~~l~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c 158 (212)
.+ +++.+.........+|+.+.|.. +++.+. .....++.+|+.+++.+.
T Consensus 319 p~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~-~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 319 PE--GITQILDDAFAGCEQLERIAIPS--SVTKIP-ESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CT--TCCEECTTTTTTCTTCCEEEECT--TCCBCC-GGGGTTCTTCCEEEESSC
T ss_pred CC--cccEehHhHhhCCCCCCEEEECc--ccCEEh-HhHhhCCCCCCEEEECCc
Confidence 53 35544333334457888888853 355553 345567888998888764
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=81.86 E-value=12 Score=29.95 Aligned_cols=10 Identities=10% Similarity=0.089 Sum_probs=5.5
Q ss_pred hcCCCcEEEE
Q 044237 36 RFHSLEILIL 45 (212)
Q Consensus 36 ~l~~L~~L~i 45 (212)
...+|+.+.+
T Consensus 215 ~~~~l~~i~~ 224 (379)
T 4h09_A 215 YGKNLKKITI 224 (379)
T ss_dssp TCSSCSEEEC
T ss_pred cccccceeee
Confidence 4455665554
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=40.81 E-value=1.1e+02 Score=24.09 Aligned_cols=102 Identities=12% Similarity=0.080 Sum_probs=58.0
Q ss_pred cCCccEEEEcCCCCceechHHHHhhcCCCcEEEEeecCCcceeccccccccccccccccccEEecCcccccccccccCCc
Q 044237 12 FGSLKQLNIGGDDSACFPIWNVLERFHSLEILILCYFSFHEEVFSMEGCLEKHVGKLAMIKELQLHQHYHLEQLCKQDSK 91 (212)
Q Consensus 12 l~~Lk~L~l~~~~~~~~p~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~ 91 (212)
..+|+.+.+... ++.+... ....+.+|+.+.+.. +++.+... .-..+.+|+++.+.+. .++.|....
T Consensus 239 ~~~L~~i~lp~~-v~~I~~~-aF~~~~~l~~i~l~~--~i~~i~~~------aF~~c~~L~~i~l~~~-~i~~I~~~a-- 305 (379)
T 4h09_A 239 MKALDEIAIPKN-VTSIGSF-LLQNCTALKTLNFYA--KVKTVPYL------LCSGCSNLTKVVMDNS-AIETLEPRV-- 305 (379)
T ss_dssp CSSCCEEEECTT-CCEECTT-TTTTCTTCCEEEECC--CCSEECTT------TTTTCTTCCEEEECCT-TCCEECTTT--
T ss_pred CccceEEEcCCC-ccEeCcc-ccceeehhccccccc--cceecccc------cccccccccccccccc-ccceehhhh--
Confidence 567888888633 5555555 456788899988853 45544321 1124677888887542 355554332
Q ss_pred cCCCcCcccEEEEecCccccccCCCCcccCCCCCeEEE
Q 044237 92 LGPIFQYLEILKVYDCQSLLILLPSSSVSFRNLTEIVA 129 (212)
Q Consensus 92 ~~~~l~~L~~L~i~~C~~L~~l~~~~~~~l~~L~~L~i 129 (212)
...+.+|+.+.+.+ +++.+...+.....+|+.+.+
T Consensus 306 -F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 306 -FMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp -TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred -hcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 23467788887753 344443332233455666555
Done!