BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044240
(859 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a
pdb|2QFZ|B Chain B, Crystal Structure Of Human Tbc1 Domain Family Member 22a
Length = 345
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 206 KKIGSGYLSAFPSRYFDHLEALKPVWAPYYTIHKILAGLLDQYKYADNAHALKMATRMVE 265
+++ + +S P+ ++EA Y+ + K+L G+ D Y +A ++M +M+E
Sbjct: 169 EEVDTVDVSGVPAEVLCNIEA-----DTYWCMSKLLDGIQDNYTFAQPG--IQMKVKMLE 221
Query: 266 YFYNRVQKVIRKYSVARHWQYLNEEPGGMNDVLYR 300
+R+ + + ++ +YL MN++L R
Sbjct: 222 ELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMR 256
>pdb|2VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|2VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|1VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase
pdb|1VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase
pdb|1AHU|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHU|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHV|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHV|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHZ|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
pdb|1AHZ|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
Length = 560
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 613 DDRP--KYASLQAILYGPYLLAGHSEGDWNITKTAKSLSDWITPIPVSYNSHLVTFSKES 670
+D+P K A L +GPY+ S+ + I + W+ P P Y S+L+T K+
Sbjct: 231 EDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVT---KIGIWLMPNPRGYQSYLITLPKDG 287
>pdb|1W1J|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
pdb|1W1J|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
Length = 560
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 613 DDRP--KYASLQAILYGPYLLAGHSEGDWNITKTAKSLSDWITPIPVSYNSHLVTFSKES 670
+D+P K A L +GPY+ S+ + I + W+ P P Y S+L+T K+
Sbjct: 231 EDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVT---KIGIWLMPNPRGYQSYLITLPKDG 287
>pdb|1W1M|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase: Glu502gly Mutant
pdb|1W1M|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase: Glu502gly Mutant
Length = 560
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 613 DDRP--KYASLQAILYGPYLLAGHSEGDWNITKTAKSLSDWITPIPVSYNSHLVTFSKES 670
+D+P K A L +GPY+ S+ + I + W+ P P Y S+L+T K+
Sbjct: 231 EDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVT---KIGIWLMPNPRGYQSYLITLPKDG 287
>pdb|1W1L|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Phe454tyr Mutant
pdb|1W1L|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Phe454tyr Mutant
Length = 560
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 613 DDRP--KYASLQAILYGPYLLAGHSEGDWNITKTAKSLSDWITPIPVSYNSHLVTFSKES 670
+D+P K A L +GPY+ S+ + I + W+ P P Y S+L+T K+
Sbjct: 231 EDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVT---KIGIWLMPNPRGYQSYLITLPKDG 287
>pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL-
Alcohol Oxidase
pdb|1E0Y|B Chain B, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL-
Alcohol Oxidase
Length = 560
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 613 DDRP--KYASLQAILYGPYLLAGHSEGDWNITKTAKSLSDWITPIPVSYNSHLVTFSKES 670
+D+P K A L +GPY+ S+ + I + W+ P P Y S+L+T K+
Sbjct: 231 EDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVT---KIGIWLMPNPGGYQSYLITLPKDG 287
>pdb|1DZN|A Chain A, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
pdb|1DZN|B Chain B, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
Length = 560
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 613 DDRP--KYASLQAILYGPYLLAGHSEGDWNITKTAKSLSDWITPIPVSYNSHLVTFSKES 670
+D+P K A L +GPY+ S+ + I + W+ P P Y S+L+T K+
Sbjct: 231 EDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVT---KIGIWLMPNPGGYQSYLITLPKDG 287
>pdb|1E8F|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8F|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8G|A Chain A, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8G|B Chain B, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8H|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-
Alcohol Oxidase In The Apo Form Complexed By Adp
pdb|1E8H|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-
Alcohol Oxidase In The Apo Form Complexed By Adp
Length = 560
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 613 DDRP--KYASLQAILYGPYLLAGHSEGDWNITKTAKSLSDWITPIPVSYNSHLVTFSKES 670
+D+P K A L +GPY+ S+ + I + W+ P P Y S+L+T K+
Sbjct: 231 EDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVT---KIGIWLMPNPGGYQSYLITLPKDG 287
>pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLT|B Chain B, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLU|A Chain A, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
pdb|1QLU|B Chain B, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
Length = 560
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 613 DDRP--KYASLQAILYGPYLLAGHSEGDWNITKTAKSLSDWITPIPVSYNSHLVTFSKES 670
+D+P K A L +GPY+ S+ + I + W+ P P Y S+L+T K+
Sbjct: 231 EDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVT---KIGIWLMPNPGGYQSYLITLPKDG 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,376,086
Number of Sequences: 62578
Number of extensions: 1181166
Number of successful extensions: 2670
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2669
Number of HSP's gapped (non-prelim): 13
length of query: 859
length of database: 14,973,337
effective HSP length: 107
effective length of query: 752
effective length of database: 8,277,491
effective search space: 6224673232
effective search space used: 6224673232
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)