BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044240
         (859 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7NJT1|GLPK_GLOVI Glycerol kinase OS=Gloeobacter violaceus (strain PCC 7421) GN=glpK
           PE=3 SV=1
          Length = 497

 Score = 36.2 bits (82), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 139 LVWSFRKTAGLRTKGNAYGGWEDPTSQLRGHFVGHYLSASALMWASTHN 187
           +VW  R+TA L  K  A G WE P  Q  G  +  Y SA+ L W   H 
Sbjct: 106 IVWQDRRTAALCQKLRAEG-WEAPIRQRTGLVIDAYFSATKLAWLLAHR 153


>sp|Q8R5X8|TRUB_FUSNN tRNA pseudouridine synthase B OS=Fusobacterium nucleatum subsp.
           nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
           LMG 13131) GN=truB PE=3 SV=1
          Length = 287

 Score = 35.8 bits (81), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 34/84 (40%)

Query: 707 ILEDSSSFKYSSYRDFIGKSVMLEPFSHPGMLVAPKGKHHELVVTNSSRAEGSSVFRLVS 766
           I+E S      S + FIG    + P      +   K  H         R E       ++
Sbjct: 90  IIEVSKENLEQSLKKFIGNIKQVPPMYSAIKIDGNKLYHLARKGIEVERPERDITIEYIN 149

Query: 767 GLDGKDNTVSLESKSHKGCYVYSL 790
            LD KDN   +E+K  KGCY+ SL
Sbjct: 150 LLDFKDNKAKIETKVSKGCYIRSL 173


>sp|Q8R5A6|TB22A_MOUSE TBC1 domain family member 22A OS=Mus musculus GN=Tbc1d22a PE=2 SV=3
          Length = 516

 Score = 34.3 bits (77), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 7/88 (7%)

Query: 213 LSAFPSRYFDHLEALKPVWAPYYTIHKILAGLLDQYKYADNAHALKMATRMVEYFYNRVQ 272
           +S+ P+    ++EA       Y+ + K+L G+ D Y +A     ++M  +M+E   +R+ 
Sbjct: 347 VSSVPAEVLRNIEA-----DTYWCMSKLLDGIQDNYTFAQPG--IQMKVKMLEELVSRID 399

Query: 273 KVIRKYSVARHWQYLNEEPGGMNDVLYR 300
           + + ++      +YL      MN++L R
Sbjct: 400 ERVHRHLDGHEVRYLQFAFRWMNNLLMR 427


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.133    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 333,143,642
Number of Sequences: 539616
Number of extensions: 14458381
Number of successful extensions: 31643
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 31640
Number of HSP's gapped (non-prelim): 9
length of query: 859
length of database: 191,569,459
effective HSP length: 126
effective length of query: 733
effective length of database: 123,577,843
effective search space: 90582558919
effective search space used: 90582558919
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)