Query 044240
Match_columns 859
No_of_seqs 253 out of 869
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 12:49:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07944 DUF1680: Putative gly 100.0 1E-110 2E-115 975.7 49.1 499 111-632 1-520 (520)
2 COG3533 Uncharacterized protei 100.0 4E-109 9E-114 907.7 34.9 495 103-636 8-505 (589)
3 PF05270 AbfB: Alpha-L-arabino 99.7 1.4E-17 3.1E-22 162.4 8.9 110 726-842 2-116 (142)
4 PF05270 AbfB: Alpha-L-arabino 99.3 2.5E-12 5.3E-17 125.8 7.8 125 675-817 13-142 (142)
5 cd00249 AGE AGE domain; N-acyl 98.8 1.5E-07 3.2E-12 106.0 18.9 297 170-479 54-374 (384)
6 cd00249 AGE AGE domain; N-acyl 98.1 0.0001 2.2E-09 83.1 18.1 251 194-456 16-289 (384)
7 PF03663 Glyco_hydro_76: Glyco 97.8 4.4E-05 9.5E-10 86.6 8.6 191 236-442 38-256 (370)
8 PF07944 DUF1680: Putative gly 97.8 0.00032 6.9E-09 83.1 15.5 241 187-440 6-268 (520)
9 PF03663 Glyco_hydro_76: Glyco 97.7 0.00016 3.4E-09 82.2 10.4 187 171-374 38-256 (370)
10 COG1331 Highly conserved prote 97.7 0.0037 7.9E-08 74.7 21.7 265 155-442 199-573 (667)
11 cd04791 LanC_SerThrkinase Lant 97.6 0.002 4.4E-08 70.8 16.8 173 240-442 88-276 (321)
12 PF07470 Glyco_hydro_88: Glyco 97.5 0.0034 7.4E-08 70.1 16.6 228 172-442 28-287 (336)
13 cd04791 LanC_SerThrkinase Lant 97.4 0.0025 5.4E-08 70.1 14.9 183 174-374 88-276 (321)
14 COG3533 Uncharacterized protei 97.4 0.00028 6.2E-09 80.6 7.3 127 168-319 127-258 (589)
15 PTZ00470 glycoside hydrolase f 97.2 0.037 8.1E-07 65.6 21.7 78 240-318 160-251 (522)
16 COG1331 Highly conserved prote 97.1 0.0079 1.7E-07 71.9 14.7 127 240-371 416-567 (667)
17 PF07221 GlcNAc_2-epim: N-acyl 96.9 0.0077 1.7E-07 67.4 11.8 248 170-435 22-304 (346)
18 cd04792 LanM-like LanM-like pr 96.6 0.057 1.2E-06 67.6 18.4 219 178-441 550-781 (825)
19 cd04434 LanC_like LanC-like pr 96.4 0.18 4E-06 55.2 18.7 224 177-442 58-301 (343)
20 PF07221 GlcNAc_2-epim: N-acyl 96.0 0.033 7.2E-07 62.4 10.2 184 173-373 85-309 (346)
21 PF07470 Glyco_hydro_88: Glyco 95.7 0.12 2.6E-06 57.8 12.9 187 240-444 30-229 (336)
22 cd04794 euk_LANCL eukaryotic L 95.4 0.26 5.7E-06 55.3 14.5 192 172-374 104-305 (343)
23 COG4403 LcnDR2 Lantibiotic mod 95.4 0.13 2.9E-06 62.9 12.5 119 172-317 699-821 (963)
24 COG4225 Predicted unsaturated 95.3 0.053 1.2E-06 60.2 8.2 115 240-372 41-169 (357)
25 PF01532 Glyco_hydro_47: Glyco 95.3 0.056 1.2E-06 63.3 8.7 192 240-439 82-312 (452)
26 cd04792 LanM-like LanM-like pr 95.1 0.8 1.7E-05 57.5 18.9 224 171-436 489-732 (825)
27 cd04434 LanC_like LanC-like pr 95.0 0.44 9.6E-06 52.2 14.3 188 174-372 104-299 (343)
28 PF06662 C5-epim_C: D-glucuron 94.9 0.36 7.7E-06 50.2 12.3 148 157-318 24-188 (189)
29 PF00759 Glyco_hydro_9: Glycos 93.8 1.1 2.4E-05 52.0 15.0 245 188-458 94-373 (444)
30 cd04793 LanC LanC is the cycla 93.5 1.6 3.4E-05 49.7 15.3 194 173-373 105-327 (382)
31 PF01532 Glyco_hydro_47: Glyco 93.3 0.43 9.3E-06 55.9 10.4 265 170-442 78-390 (452)
32 PTZ00470 glycoside hydrolase f 93.2 1 2.2E-05 53.7 13.2 199 177-385 230-466 (522)
33 COG2942 N-acyl-D-glucosamine 2 92.8 14 0.00031 42.3 20.9 279 140-435 20-332 (388)
34 PF06662 C5-epim_C: D-glucuron 92.6 0.22 4.8E-06 51.7 5.9 131 296-433 37-186 (189)
35 COG4225 Predicted unsaturated 92.6 0.44 9.4E-06 53.2 8.5 141 290-453 37-180 (357)
36 COG2942 N-acyl-D-glucosamine 2 92.1 2.2 4.9E-05 48.6 13.4 195 165-373 114-337 (388)
37 cd04794 euk_LANCL eukaryotic L 91.9 2.5 5.4E-05 47.5 13.8 134 171-319 163-300 (343)
38 KOG2244 Highly conserved prote 91.1 6.9 0.00015 46.3 16.0 120 134-274 418-545 (786)
39 PLN02345 endoglucanase 90.2 29 0.00062 41.2 20.6 123 187-315 81-228 (469)
40 KOG2787 Lanthionine synthetase 90.1 2.8 6E-05 46.6 11.3 130 173-319 222-356 (403)
41 PLN02909 Endoglucanase 88.4 43 0.00094 39.9 20.3 120 187-316 119-264 (486)
42 cd04793 LanC LanC is the cycla 86.0 10 0.00022 43.1 13.3 139 172-319 175-323 (382)
43 PF05147 LANC_like: Lanthionin 83.8 0.96 2.1E-05 50.1 3.6 178 181-374 118-309 (355)
44 KOG2429 Glycosyl hydrolase, fa 82.8 7.5 0.00016 46.1 10.3 158 140-319 228-401 (622)
45 KOG2244 Highly conserved prote 82.1 9.9 0.00021 45.0 10.8 142 172-318 508-672 (786)
46 KOG2787 Lanthionine synthetase 80.5 15 0.00033 41.0 11.1 111 253-374 240-361 (403)
47 PF06917 Pectate_lyase_2: Peri 80.4 4.2 9E-05 47.7 7.0 73 241-318 390-466 (557)
48 PF05147 LANC_like: Lanthionin 76.5 6.5 0.00014 43.5 7.2 132 172-319 166-304 (355)
49 COG4403 LcnDR2 Lantibiotic mod 73.5 31 0.00068 43.3 12.1 156 183-366 661-820 (963)
50 KOG2430 Glycosyl hydrolase, fa 71.7 18 0.00039 40.5 8.7 145 155-319 235-389 (587)
51 PLN02266 endoglucanase 69.0 68 0.0015 38.5 13.5 126 187-317 129-280 (510)
52 PLN02340 endoglucanase 69.0 69 0.0015 39.3 13.7 126 187-317 115-264 (614)
53 PLN02175 endoglucanase 67.6 49 0.0011 39.4 11.8 103 254-373 194-309 (484)
54 PF15095 IL33: Interleukin 33; 66.4 78 0.0017 33.8 11.6 87 698-789 157-245 (268)
55 KOG2431 1, 2-alpha-mannosidase 65.6 12 0.00025 43.2 5.9 81 239-319 179-271 (546)
56 KOG2431 1, 2-alpha-mannosidase 65.2 29 0.00062 40.2 8.8 186 183-384 255-488 (546)
57 PF13243 Prenyltrans_1: Prenyl 64.3 6.7 0.00014 36.0 3.2 79 173-270 27-105 (109)
58 PLN02308 endoglucanase 63.9 49 0.0011 39.5 11.0 124 188-316 112-261 (492)
59 PLN02613 endoglucanase 61.5 88 0.0019 37.5 12.4 122 186-317 110-257 (498)
60 PF06917 Pectate_lyase_2: Peri 58.8 43 0.00094 39.7 9.0 87 171-270 386-472 (557)
61 PLN00119 endoglucanase 56.1 76 0.0016 37.9 10.7 128 188-317 117-265 (489)
62 PF09492 Pec_lyase: Pectic aci 55.4 23 0.0005 39.4 5.9 90 348-444 48-146 (289)
63 TIGR02474 pec_lyase pectate ly 55.0 15 0.00032 40.8 4.3 50 407-459 45-94 (290)
64 PLN02420 endoglucanase 53.5 1.2E+02 0.0025 36.7 11.7 125 187-317 126-276 (525)
65 KOG2204 Mannosyl-oligosacchari 51.5 68 0.0015 38.5 9.1 32 183-216 344-375 (625)
66 PLN02171 endoglucanase 51.4 2E+02 0.0044 35.5 13.5 125 188-317 116-265 (629)
67 PF05592 Bac_rhamnosid: Bacter 50.0 1.3E+02 0.0027 35.7 11.5 123 183-318 163-311 (509)
68 TIGR02474 pec_lyase pectate ly 44.2 1.2E+02 0.0027 33.8 9.3 90 172-270 47-149 (290)
69 PHA02651 IL-1 receptor antagon 43.6 29 0.00063 35.4 4.0 28 773-800 115-144 (165)
70 PF09492 Pec_lyase: Pectic aci 42.9 1.1E+02 0.0024 34.1 8.8 92 172-270 42-144 (289)
71 PLN03009 cellulase 42.3 2E+02 0.0043 34.6 11.3 124 187-316 112-264 (495)
72 COG1188 Ribosome-associated he 40.5 56 0.0012 30.8 5.0 37 567-612 33-69 (100)
73 cd00100 IL1 Interleukin-1 homo 35.6 36 0.00078 34.1 3.3 27 773-799 103-130 (144)
74 cd02889 SQCY Squalene cyclase 34.9 3.1E+02 0.0068 30.4 11.0 91 121-217 45-140 (348)
75 COG4833 Predicted glycosyl hyd 33.7 1.3E+02 0.0029 33.2 7.2 188 226-435 38-241 (377)
76 PF00340 IL1: Interleukin-1 / 33.5 53 0.0011 31.7 4.0 27 774-800 80-107 (120)
77 KOG2204 Mannosyl-oligosacchari 33.1 1.9E+02 0.0041 35.0 8.9 126 170-308 267-411 (625)
78 PF13249 Prenyltrans_2: Prenyl 32.9 1E+02 0.0022 28.1 5.7 60 194-269 42-103 (113)
79 PF02011 Glyco_hydro_48: Glyco 32.5 1E+02 0.0022 37.2 6.6 95 175-270 413-523 (619)
80 PF09586 YfhO: Bacterial membr 32.3 1.5E+02 0.0032 37.6 8.7 58 539-602 773-831 (843)
81 KOG2430 Glycosyl hydrolase, fa 31.5 3.8E+02 0.0083 30.5 10.5 192 172-379 188-399 (587)
82 TIGR01787 squalene_cyclas squa 30.1 3E+02 0.0066 33.9 10.6 80 186-270 382-472 (621)
83 smart00125 IL1 Interleukin-1 h 30.0 50 0.0011 33.2 3.2 27 773-799 106-133 (147)
84 PLN00119 endoglucanase 28.9 1.1E+02 0.0025 36.5 6.5 62 359-433 203-264 (489)
85 TIGR03463 osq_cycl 2,3-oxidosq 27.0 5E+02 0.011 32.2 11.7 108 155-270 357-489 (634)
86 PF05726 Pirin_C: Pirin C-term 25.9 1.4E+02 0.003 27.7 5.3 51 569-632 30-86 (104)
87 PF13464 DUF4115: Domain of un 24.2 4.8E+02 0.01 22.7 9.4 25 551-580 38-62 (77)
88 TIGR01507 hopene_cyclase squal 23.8 3E+02 0.0065 34.1 9.0 108 155-270 364-483 (635)
89 TIGR03000 plancto_dom_1 Planct 23.3 4.1E+02 0.009 23.9 7.3 21 553-578 3-23 (75)
90 PF07771 TSGP1: Tick salivary 21.8 56 0.0012 31.7 1.8 35 1-35 1-36 (120)
91 PF08547 CIA30: Complex I inte 21.6 3.5E+02 0.0076 26.9 7.6 53 805-857 47-103 (157)
92 cd02892 SQCY_1 Squalene cyclas 20.5 2.1E+02 0.0046 35.2 6.9 57 155-217 358-423 (634)
93 TIGR03515 GldC gliding motilit 20.4 2.1E+02 0.0045 27.3 5.1 48 224-271 56-104 (108)
No 1
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=100.00 E-value=1e-110 Score=975.72 Aligned_cols=499 Identities=37% Similarity=0.633 Sum_probs=455.7
Q ss_pred CEEeCCCCchHHHHHHHHHHHhhccchhhhHHHHHhcCCCCCCCCCCCCc--CCCCCccccchhhHHHHHHHHHHhcCCh
Q 044240 111 DVRLGKDSMHWRAQQTNLEYLLMLDVDRLVWSFRKTAGLRTKGNAYGGWE--DPTSQLRGHFVGHYLSASALMWASTHND 188 (859)
Q Consensus 111 ~VrL~~~~~~~~~~~~~~~yll~~d~drLL~nFr~~AGl~~~g~~~gGWe--~~dsdl~GH~~Gh~LsA~a~~~a~t~D~ 188 (859)
+|||+ ++||+++|+++++|+|++++|||+++||..|||++++.++|||| +++..++||++||||||+|++|+.++|+
T Consensus 1 ~V~l~-~~~~~~~~~~~~~~~l~~~~d~ll~~~r~~agl~~~~~~~g~we~~~~~~~~~~~~~g~wl~a~a~~~~~~~D~ 79 (520)
T PF07944_consen 1 DVRLT-DGFWKRRQELNRAYLLPLDPDRLLYNFRSHAGLPNFAIAYGGWEGEFPGWWFRGHDVGKWLEAAAYAYAYTGDP 79 (520)
T ss_pred CeEEC-cHHHHHHHHHHHHHHHHhHHHHHhhhcCcccCCCCccccCCCCccCCCCCccCCCcHHHHHHHHHHHHHHCCCH
Confidence 69999 58999999999999999999999999999999999988999999 8889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhCCCccccccCCchhhhccccCCCccc----chhhhHHHhHHHHHHHHhCChhHHHHHHHHH
Q 044240 189 TLKEKMSAVVSALSHCQKKIGSGYLSAFPSRYFDHLEALKPVWAP----YYTIHKILAGLLDQYKYADNAHALKMATRMV 264 (859)
Q Consensus 189 ~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~~~r~~~l~~~w~p----yy~~HkI~aGLld~y~~tG~~~aL~va~~~a 264 (859)
+|++|++++|+.|++||+ +||||+++++.. ..+.+..|+| +|+.|||+.||+|+|++|||+++|+|++|++
T Consensus 80 ~l~~~~d~~V~~l~~~Q~--~dGYl~~~~~~~---~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~a 154 (520)
T PF07944_consen 80 ELKAKADEIVDELAAAQQ--PDGYLGTYPEER---NFNPDDRWAPDMHELYCLGKLLEGLIDYYEATGNERALDVATKLA 154 (520)
T ss_pred HHHHHHHHHHHHHHHhcc--CCceeccccccc---ccccccCCCCCccceehHhHHHHHHHHHHHHHCcHHHHHHHHHHH
Confidence 999999999999999999 999999998653 2245678888 9999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhcccccccccccCCCCCchhHHHHHHHHhcCCHHHHHHHhhccccccccc--ccccCCCCCCCcccCCc
Q 044240 265 EYFYNRVQKVIRKYSVARHWQYLNEEPGGMNDVLYRLFSITKDPRHLFLAHLFAKPCFLGL--LAVQSNDISDFHVNTHI 342 (859)
Q Consensus 265 d~~~~~~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~f~~~~~~~~--la~~~d~l~~~Hanthi 342 (859)
||+++++... ..+.....+.+|+|||+++|+|||++|||++||+||++|++..+.++ +....|.+++.|+|+++
T Consensus 155 d~~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~~~~~~~~d~~~~~~a~~~~ 230 (520)
T PF07944_consen 155 DWVYRRLSRL----GPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDPYDLAYGQDHLPGRHANTHI 230 (520)
T ss_pred HHHHHHhccC----CHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCchhhcCccCCCcccccee
Confidence 9996654432 22222334557899999999999999999999999999999999888 88889999999999999
Q ss_pred ceee-------ehhhHHHhcCchHHHHHHHHHHHHhhccCeEeecCCCCC---CCCCCCCcccccCCcccccchhhHHHH
Q 044240 343 PLVI-------GTQRRYELTGELLHKEMGTFFMDLVNSSHTYATGGTSVG---EFWRDPKRLATTLGTNNEESCTTYNML 412 (859)
Q Consensus 343 P~~~-------G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~y~TGG~g~~---E~f~~~~~l~~~l~~~~~ETCas~nml 412 (859)
|.++ |++++|++|||++|++++++||++|+++|||+|||+|++ |+|++++++++ ...++|||++||||
T Consensus 231 ~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~--~~~~~EtCas~~~~ 308 (520)
T PF07944_consen 231 GHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDLPN--RLAYAETCASVNMM 308 (520)
T ss_pred eEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCCCc--CCCCccccHHHHHH
Confidence 9998 999999999999999999999999999999999999999 99999999987 35569999999999
Q ss_pred HHHHHhhcccCCchHHHHHHHHHhhhhhcccCCCCCCcEEEecCCCCCCCCCCCCCCCCCCCcccccCCCccchhhhccc
Q 044240 413 KVSRNLFRWTKESAYADFYERALINGVLSIQRGTSPGVMIYMLPLGPGSSKQTDNGWGTPFDSFWCCYGTGIESFSKLGD 492 (859)
Q Consensus 413 kl~~~Lf~~tgd~~YaD~~ERalyN~vLa~q~~~~~g~~~Y~~PL~~g~~k~~~~~~~t~~~~fwCC~gtg~e~~akl~~ 492 (859)
|++++||++|||++|+|+|||++||++||+|++ |++.++|++||+++..+.....+++++++||||+||++|+++||++
T Consensus 309 ~~~~~L~~~tgd~~yaD~~Er~lyN~~la~~~~-d~~~~~Y~~pl~~~~~~~~~~~~~~~~~~~~CC~~n~~r~~~~~~~ 387 (520)
T PF07944_consen 309 KLARRLFRLTGDARYADYYERALYNALLAGQSP-DGGSFFYFNPLNSGPYKHRWKNYRTPWFSFWCCPGNGARGWAKLPD 387 (520)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHhcccccccCC-CCCeeEEecCCccCcCccccccccCCCCCCCCCcchHHHHHHHHhh
Confidence 999999999999999999999999999999997 8999999999988775531135677889999999999999999999
Q ss_pred ceEEeecCCCCeEEEEEeeCcEEEeeeCc--eEEEEEeCCCCCCCCCeEEEEEEeeCCCCeeeEEEEeecCCCCCCCcEE
Q 044240 493 SIYFEEKGKIPGLYIIQYISSSFDWKSGQ--IVLNQKVDPVVSSDPYLRITLTFSPKGAGKASTLNLRIPSWSNSNGAKA 570 (859)
Q Consensus 493 ~iY~~~~~~~~~LyVnLYipStl~~~~~g--v~I~q~t~~pyp~~~~~~V~ltv~~~~~~~~ftL~LRIP~Wa~~~~~~v 570 (859)
+||++++ ++||||||+||+++|+.+| |+|+|+|+ |||++ +|+|+|++. ++.+|+|+||||+|++ +++|
T Consensus 388 ~iy~~~~---~~l~v~ly~~s~~~~~~~~~~v~i~q~T~--yP~~~--~v~i~v~~~-~~~~f~l~lRIP~Wa~--~~~i 457 (520)
T PF07944_consen 388 YIYFRDD---DGLYVNLYIPSELTWPVGGGTVTITQETD--YPFEG--TVRITVSPD-KPVPFTLRLRIPSWAK--GATI 457 (520)
T ss_pred hheEecC---CEEEEEEEcceEEEEEECCcEEEEEEecC--CCCCC--CEEEEEEcC-CCccEEEEEEccCCCC--CcEE
Confidence 9999985 7999999999999999988 88889888 88999 899999775 5889999999999998 7999
Q ss_pred EECCee-cccCCCCCEEEEEeecCCCCEEEEEecceeEEEeccCCccccCCeEEEeecceeee
Q 044240 571 MLNGQS-LALPSPGNSLSVTKTWSSDDKLTIHLPLSLWTEAIKDDRPKYASLQAILYGPYLLA 632 (859)
Q Consensus 571 ~VNG~~-~~~~~~ggY~~I~R~W~~GD~I~L~LPm~lr~~~~~d~~~~~~~~vAv~rGPlVlA 632 (859)
+|||++ .....++||++|+|+|++||+|+|+|||++|++++....+..++.+||+|||||||
T Consensus 458 ~vNG~~~~~~~~~~gy~~i~r~W~~gD~v~l~lpm~~r~~~~~~~~~~~~~~vAv~rGPlV~a 520 (520)
T PF07944_consen 458 RVNGEPVVDTAVPGGYLTIEREWKDGDVVELRLPMEVRLEPANPRVPDDPGRVAVMRGPLVYA 520 (520)
T ss_pred EECCEeCCCCcCCCCeEEEEeeccCCcEEEEEecCeeEEEeCCCCCccCCCeEEEEeCchhcC
Confidence 999999 55567999999999999999999999999999998433444478999999999998
No 2
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=4e-109 Score=907.70 Aligned_cols=495 Identities=26% Similarity=0.411 Sum_probs=446.9
Q ss_pred ccccccCCCEEeCCCCchHHHHHHHHHHHhhccchhhhHHHHHhcCCCCCCCCCCCCcCCCCCccccchhhHHHHHHHHH
Q 044240 103 FLEDVSLHDVRLGKDSMHWRAQQTNLEYLLMLDVDRLVWSFRKTAGLRTKGNAYGGWEDPTSQLRGHFVGHYLSASALMW 182 (859)
Q Consensus 103 ~~~p~~l~~VrL~~~~~~~~~~~~~~~yll~~d~drLL~nFr~~AGl~~~g~~~gGWe~~dsdl~GH~~Gh~LsA~a~~~ 182 (859)
.++|+++++|.+. ..|..+.++++.+++|+|+++|..+++|+.+...++||+.+ .+.||-+||||||+|+++
T Consensus 8 ~~r~v~v~~~~~~------~~qg~~~d~v~~~~~d~Lldr~~ea~~l~~~d~~r~g~~~q--~f~dsdlgkwlea~A~~l 79 (589)
T COG3533 8 VLRPVTVKDVIFG------QFQGKNRDVVVSLQADRLLDRCHEAAMLPAKDPFRGGWETQ--MFWDSDLGKWLEAAAYSL 79 (589)
T ss_pred ccccCCcCchhcc------ccccccceeEEecCHHHHHhHhhhccCCCccCcccccceee--eeccccHHHHHHHHHHHH
Confidence 3777777777763 34577889999999999999999999999888889999843 477777899999999999
Q ss_pred HhcCChhHHHHHHHHHHHHHHHhhhCCCccccccCCch--hhhccccCCCcccchhhhHHHhHHHHHHHHhCChhHHHHH
Q 044240 183 ASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPSRY--FDHLEALKPVWAPYYTIHKILAGLLDQYKYADNAHALKMA 260 (859)
Q Consensus 183 a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~--~~r~~~l~~~w~pyy~~HkI~aGLld~y~~tG~~~aL~va 260 (859)
+.++|++|.+++|++|++++++|+ +|||||++.+.. ..||.+++..|+.||.+|+| +|++|+|++||+.++|+|+
T Consensus 80 ~~~~dp~Lekr~D~vi~~~a~~Qd--edGYl~~~~q~~~pe~Rw~nlr~~HelY~aghLi-eg~va~~qaTGkr~lldV~ 156 (589)
T COG3533 80 ANKGDPELEKRIDEVVEELARAQD--EDGYLGGWFQADFPEERWGNLRPNHELYCAGHLI-EGGVAAHQATGKRRLLDVV 156 (589)
T ss_pred hcCCCHHHHHHHHHHHHHHHHhhc--cCCcccceeeccCchhhhhccccchHHHHhHHHH-hhhhHHHHhhCcchHHHHH
Confidence 999999999999999999999999 999999987533 56899999999977766655 5666999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccccccccccCCCCCchhHHHHHHHHhcCCHHHHHHHhhcccccccccccccCCCCCCCcccC
Q 044240 261 TRMVEYFYNRVQKVIRKYSVARHWQYLNEEPGGMNDVLYRLFSITKDPRHLFLAHLFAKPCFLGLLAVQSNDISDFHVNT 340 (859)
Q Consensus 261 ~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~f~~~~~~~~la~~~d~l~~~Hant 340 (859)
+++|||+.+.|++. .++.+. .|++++|+++|++||+.|||+|||+||++|.+.+..+|++.+.+.+.+.||++
T Consensus 157 ~rlADhi~tvfgp~----~~q~~g---~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg~~P~~~rg~e~~~gHAvr 229 (589)
T COG3533 157 CRLADHIATVFGPE----EDQVPG---YCGHPEIELALAELYRLTGDQRYLDLARRFIHQRGVEPLAQRGDELEGGHAVR 229 (589)
T ss_pred HHHHHhhhhhcCcc----cccccc---ccCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccChhhcCchhhhhhhHHH
Confidence 99999999888764 224444 45666799999999999999999999999999999999888888899999999
Q ss_pred CcceeeehhhHHHhcCchHHHHHHHHHHHHhhccCeEeecCCCC-CCCCCCCCcccccCCcccccchhhHHHHHHHHHhh
Q 044240 341 HIPLVIGTQRRYELTGELLHKEMGTFFMDLVNSSHTYATGGTSV-GEFWRDPKRLATTLGTNNEESCTTYNMLKVSRNLF 419 (859)
Q Consensus 341 hiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~y~TGG~g~-~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf 419 (859)
+||+.+|+|++|+++||+.++.++++||++|+++|+|+|||+|+ +|+|+.+|+|++ .+.|+|||+|||||||++|||
T Consensus 230 ~iyl~~G~A~l~~~~gDds~r~~~~~lW~~~t~k~~YitGG~g~~~E~F~~~ydlpn--~~~yAEtCas~~l~~~a~Rml 307 (589)
T COG3533 230 QIYLYIGAADLAEETGDDSLRQAAEFLWQNVTTRQSYITGGNGSSNEHFGPDYDLPN--RTAYAETCASYNLLKLARRML 307 (589)
T ss_pred HHHHhhhHHHHHHHhCCHHHHHHHHHHHHHhhhhheEEecccCCccccCCccccCcc--cchHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999965 599999999998 679999999999999999999
Q ss_pred cccCCchHHHHHHHHHhhhhhcccCCCCCCcEEEecCCCCCCCCCCCCCCCCCCCcccccCCCccchhhhcccceEEeec
Q 044240 420 RWTKESAYADFYERALINGVLSIQRGTSPGVMIYMLPLGPGSSKQTDNGWGTPFDSFWCCYGTGIESFSKLGDSIYFEEK 499 (859)
Q Consensus 420 ~~tgd~~YaD~~ERalyN~vLa~q~~~~~g~~~Y~~PL~~g~~k~~~~~~~t~~~~fwCC~gtg~e~~akl~~~iY~~~~ 499 (859)
.+++|++|||+|||+|||++|++|++ |+++|||+|||..+.. | .+.++++||||.||+.|.++++++|||..++
T Consensus 308 ~~~~d~~yaDvmErALYN~iL~g~sl-Dg~~ffY~nPle~~gr----h-~r~~w~~c~CCppn~ar~~as~g~yiY~~~~ 381 (589)
T COG3533 308 GWGPDSQYADVMERALYNHILAGQSL-DGGMFFYFNPLESGGR----H-SRQKWFSCWCCPPNGARSVASIGDYIYTRAD 381 (589)
T ss_pred ccCCCchHHHHHHHHHHhccccccCC-CCCeeEEecchhhCCC----c-cccccccCCCCCCcHhhhhhhccceEEccCC
Confidence 99999999999999999999999997 9999999999986542 1 1347789999999999999999999999976
Q ss_pred CCCCeEEEEEeeCcEEEeeeCceEEEEEeCCCCCCCCCeEEEEEEeeCCCCeeeEEEEeecCCCCCCCcEEEECCeeccc
Q 044240 500 GKIPGLYIIQYISSSFDWKSGQIVLNQKVDPVVSSDPYLRITLTFSPKGAGKASTLNLRIPSWSNSNGAKAMLNGQSLAL 579 (859)
Q Consensus 500 ~~~~~LyVnLYipStl~~~~~gv~I~q~t~~pyp~~~~~~V~ltv~~~~~~~~ftL~LRIP~Wa~~~~~~v~VNG~~~~~ 579 (859)
++||||||+.|+++.+..+|.|+|+|+ |||++ +|+|+|... .+.+|+|+||||+||. .++++|||+.+..
T Consensus 382 ---d~lyvnLy~~S~~~l~~~~v~irqet~--yPw~g--~v~ltv~~~-~p~~~tlaLRlP~W~a--~~tl~vNG~~~~~ 451 (589)
T COG3533 382 ---DALYVNLYIASTADLPGDDVQIRQETN--YPWSG--QVKLTVERA-QPVLFTLALRLPAWCA--APTLRVNGKEVIQ 451 (589)
T ss_pred ---CEEEEEEeecccccccccceEEEeccC--CCCcC--eeEEEEecC-CCceEEEEEecccccC--CcEEEEcCcchhh
Confidence 699999999999999998999999999 89999 999999986 6899999999999999 7999999987777
Q ss_pred CCCCCEEEEEeecCCCCEEEEEecceeEEEeccCCccccCCeEEEeecceeeeeccC
Q 044240 580 PSPGNSLSVTKTWSSDDKLTIHLPLSLWTEAIKDDRPKYASLQAILYGPYLLAGHSE 636 (859)
Q Consensus 580 ~~~ggY~~I~R~W~~GD~I~L~LPm~lr~~~~~d~~~~~~~~vAv~rGPlVlA~~~~ 636 (859)
...+||++|+|+||+||+|+|.|||++|++..|+++..+ + ||+|||||||++..
T Consensus 452 ~~~~GYa~i~R~Wq~GDrV~L~LpM~vr~y~nP~~r~~~-G--Ai~rGPlVyc~e~~ 505 (589)
T COG3533 452 TRGKGYARISREWQAGDRVELMLPMPVRIYANPDVRHDV-G--AIMRGPLVYCAEAG 505 (589)
T ss_pred ccCCCeeeeeehhcCCCeEEEeecceeEeecCCcchhhh-h--hhhcCCeEEEEecC
Confidence 778999999999999999999999999999999886542 2 99999999998855
No 3
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=99.71 E-value=1.4e-17 Score=162.40 Aligned_cols=110 Identities=25% Similarity=0.309 Sum_probs=90.0
Q ss_pred eeeecCCCCCCceeecCCCceeEEEecCCCCCC-----CceEEEeecCCCCCCeEEEeecCCcceEEEEeecCceEEEEe
Q 044240 726 SVMLEPFSHPGMLVAPKGKHHELVVTNSSRAEG-----SSVFRLVSGLDGKDNTVSLESKSHKGCYVYSLKSGKSMTLRC 800 (859)
Q Consensus 726 ~v~l~p~~~p~~~v~~~~~~~~l~v~~~~~~~~-----~s~f~~vpgl~g~~~~vsles~~~pg~~~~~~~~g~~~~l~~ 800 (859)
+++++++++|++||||+|..++|. +..++.. |++|+|||||++ +++|||||+++||.|||| .+..|+|+
T Consensus 2 ~~~~~s~~~~~ryirh~~~~~~~~--~v~~~s~~~~r~da~f~vvpGLa~-~~~vSfES~~~PG~yLrh--~~~~v~l~- 75 (142)
T PF05270_consen 2 SLRLTSPNYPDRYIRHRGSLVRLD--PVSSSSSALDRADATFRVVPGLAD-SSCVSFESVNYPGYYLRH--SNFRVRLE- 75 (142)
T ss_dssp EEEEEESSSTTEEEEEETTEEEEE--ES-SSGGHHHHHGG-EEEEE-SS--TTCEEEEESSSTTEEEEE--ETTEEEEE-
T ss_pred eEEEECCCCCCeEEEEcCceEEEe--eccCCcchhhccCceEEEEEccCC-CCEEEEEECCCCCcEEEE--ECCEEEEe-
Confidence 578999999999999998877774 4444444 899999999998 689999999999999999 89999999
Q ss_pred ecCCCCcccccccccccccCCCcCCCceEEEecCCCceeccc
Q 044240 801 HKKSKKPKFNHAVSFVMEKGKSKYHPISFVAKGTNRNYLLEP 842 (859)
Q Consensus 801 ~~~~~~~~f~~~asF~~~~gl~~~~~~sf~a~g~~~~~ll~p 842 (859)
+++++..|.++|+|...+||+...-+||+...-+..||.+=
T Consensus 76 -~~d~s~~F~~dATF~~~~Gl~~~g~~sfeS~n~Pg~ylrh~ 116 (142)
T PF05270_consen 76 -KNDGSALFREDATFCPRPGLAGPGYVSFESYNYPGRYLRHY 116 (142)
T ss_dssp -E--SSHHHHHHT-EEEEE-SSSTTEEEEEESSSTTEEEEEE
T ss_pred -ecCCCccccCCceEEEecCCCCCCcceEEEecCCCeEEEEE
Confidence 47899999999999999999995557999999999999753
No 4
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=99.33 E-value=2.5e-12 Score=125.84 Aligned_cols=125 Identities=18% Similarity=0.231 Sum_probs=86.5
Q ss_pred EEEecCCCcceeeeeccc-CCccccceEEEEEEEecCCCCCcccccccCCCceeeecCCCCCCceeecCCCceeEEEecC
Q 044240 675 FVLTSSNPSIITMEKFHK-FGTDTAVRATFRLIILEDSSSFKYSSYRDFIGKSVMLEPFSHPGMLVAPKGKHHELVVTNS 753 (859)
Q Consensus 675 ~~~~~~~~~~l~~~~~p~-~gt~~~~~~~fr~~~~~~~~~~~~~~p~~~~g~~v~l~p~~~p~~~v~~~~~~~~l~v~~~ 753 (859)
-++.|.+.. +.++.... .++-.+-.++||+ +++-.++ ..|.+|+-+.||.||||.+..+.| +.+
T Consensus 13 ryirh~~~~-~~~~~v~~~s~~~~r~da~f~v-vpGLa~~-----------~~vSfES~~~PG~yLrh~~~~v~l--~~~ 77 (142)
T PF05270_consen 13 RYIRHRGSL-VRLDPVSSSSSALDRADATFRV-VPGLADS-----------SCVSFESVNYPGYYLRHSNFRVRL--EKN 77 (142)
T ss_dssp EEEEEETTE-EEEEES-SSGGHHHHHGG-EEE-EE-SS-T-----------TCEEEEESSSTTEEEEEETTEEEE--EE-
T ss_pred eEEEEcCce-EEEeeccCCcchhhccCceEEE-EEccCCC-----------CEEEEEECCCCCcEEEEECCEEEE--eec
Confidence 345666655 55555432 3334567899995 8663332 379999999999999998555555 554
Q ss_pred CCCC---CCceEEEeecCCCCCCeEEEeecCCcceEEEEeecCceEEEEeec-CCCCccccccccccc
Q 044240 754 SRAE---GSSVFRLVSGLDGKDNTVSLESKSHKGCYVYSLKSGKSMTLRCHK-KSKKPKFNHAVSFVM 817 (859)
Q Consensus 754 ~~~~---~~s~f~~vpgl~g~~~~vsles~~~pg~~~~~~~~g~~~~l~~~~-~~~~~~f~~~asF~~ 817 (859)
..+. .|+.|..+|||.+ +|.|||||.++||+|||| .+..+.|.-.+ .+.++.|++++||+.
T Consensus 78 d~s~~F~~dATF~~~~Gl~~-~g~~sfeS~n~Pg~ylrh--~~~~l~l~~~~g~d~~~~f~~datf~v 142 (142)
T PF05270_consen 78 DGSALFREDATFCPRPGLAG-PGYVSFESYNYPGRYLRH--YNGELYLAPIGGYDNTDSFRADATFRV 142 (142)
T ss_dssp -SSHHHHHHT-EEEEE-SSS-TTEEEEEESSSTTEEEEE--ETTEEEEEESSSGG-SHHHHHHT-EEE
T ss_pred CCCccccCCceEEEecCCCC-CCcceEEEecCCCeEEEE--ECCEEEEecCCCcCcchhhccccEEeC
Confidence 4432 7889999999999 799999999999999999 78889999411 344788999999963
No 5
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.82 E-value=1.5e-07 Score=105.96 Aligned_cols=297 Identities=13% Similarity=0.075 Sum_probs=170.4
Q ss_pred chhhHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCC-CccccccCCchhhhccccCCCcccchhhhHHHhHHHHHH
Q 044240 170 FVGHYLSASALMWASTHNDTLKEKMSAVVSALSHCQKKIG-SGYLSAFPSRYFDHLEALKPVWAPYYTIHKILAGLLDQY 248 (859)
Q Consensus 170 ~~Gh~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~-dGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~y 248 (859)
..+..|-++|.++..+++++.++.++..++.|.+.-..-. .||+-.++..- .-.......+. -.| ++.|+..+|
T Consensus 54 ~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g-~~~~~~~~l~~---~a~-~l~ala~~~ 128 (384)
T cd00249 54 LQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDG-RPVDATKDLYS---HAF-ALLAAAQAA 128 (384)
T ss_pred EecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCC-CCcccccchHH---HHH-HHHHHHHHH
Confidence 4678899999999999999999999999999988533112 47877664210 00000111222 122 556888999
Q ss_pred HHhCChhHHHHHHHHHHHHHHHhhhhhhccc--ccccccccC--CCCCchhHHHHHHHHhcCCHHHHHHHhhccc---cc
Q 044240 249 KYADNAHALKMATRMVEYFYNRVQKVIRKYS--VARHWQYLN--EEPGGMNDVLYRLFSITKDPRHLFLAHLFAK---PC 321 (859)
Q Consensus 249 ~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~--~~~~~~~l~--~E~GGmneaL~~LY~~TGd~ryL~LA~~f~~---~~ 321 (859)
+++|++++|+.|+++.+++.+++-+.-..+- ....+.... ..+.=+.++|.+||++|||++|++.|+.+.+ +.
T Consensus 129 ~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~ 208 (384)
T cd00249 129 KVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDR 208 (384)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987731001110 000011111 1110014789999999999999999876532 11
Q ss_pred cccc----ccc-cCCCCCCCcc--cCCc-c-----eeeehhhHHHhcCchHHHHHHHHHHHHhhccCeE-e-ecCCCCCC
Q 044240 322 FLGL----LAV-QSNDISDFHV--NTHI-P-----LVIGTQRRYELTGELLHKEMGTFFMDLVNSSHTY-A-TGGTSVGE 386 (859)
Q Consensus 322 ~~~~----la~-~~d~l~~~Ha--nthi-P-----~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~y-~-TGG~g~~E 386 (859)
|.++ +.. ..+...-... ...+ | .+.....+|+++||+.|++.++..|+.+.+ ++. . +||+- +
T Consensus 209 ~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~-~~~d~~~G~~~--~ 285 (384)
T cd00249 209 FIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALA-LGWDPERGGLY--Y 285 (384)
T ss_pred hcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH-hCcCccCCCEE--E
Confidence 2111 000 0010000000 0111 2 123355678999999999999999998875 332 1 13221 1
Q ss_pred CCCCCCcccccCCcccccchhhHHHHHHHHHhhcccCCchHHHHHHHHHhhhhhcc-cCCCCCCcEEEecCCCCCCCCCC
Q 044240 387 FWRDPKRLATTLGTNNEESCTTYNMLKVSRNLFRWTKESAYADFYERALINGVLSI-QRGTSPGVMIYMLPLGPGSSKQT 465 (859)
Q Consensus 387 ~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~ERalyN~vLa~-q~~~~~g~~~Y~~PL~~g~~k~~ 465 (859)
.+.++...+ ...+.-.....++++....|++++||.+|.+.++++. +.+... .++..++-+.+..+-+.-.....
T Consensus 286 ~~~~~~~~~---~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~-~~~~~~~~d~~~G~w~~~~~~~g~~~~~~~ 361 (384)
T cd00249 286 SFLDDGGLL---EDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAW-AYLWRHFIDPEYGLWFGYLDADGKVLLTPK 361 (384)
T ss_pred eeECCCCCc---ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHHHHhcCCCCCCcceeeECCCCCCcCCCC
Confidence 111111111 1224445557788888889999999999999998874 333332 22222334445544321111101
Q ss_pred CCCCCCCCCccccc
Q 044240 466 DNGWGTPFDSFWCC 479 (859)
Q Consensus 466 ~~~~~t~~~~fwCC 479 (859)
..|++.++.+-||
T Consensus 362 -~~~~~~yH~~~a~ 374 (384)
T cd00249 362 -GPAKTFYHVVRAL 374 (384)
T ss_pred -CCCCCCccHHhHH
Confidence 4566677777666
No 6
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.11 E-value=0.0001 Score=83.14 Aligned_cols=251 Identities=12% Similarity=0.098 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHh-hhCCCccccccCCchhhhccccCCCcccchhhhHHHhHHHHHHHHhCChhHHHHHHHHHHHHHHHhh
Q 044240 194 MSAVVSALSHCQ-KKIGSGYLSAFPSRYFDHLEALKPVWAPYYTIHKILAGLLDQYKYADNAHALKMATRMVEYFYNRVQ 272 (859)
Q Consensus 194 ~d~~Vd~l~~~Q-~~~~dGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~ 272 (859)
++.+++.+.... ..-..||....... ..-....+..|.--- ++-++-.+|..+|+++++++|.+..+++.+.+.
T Consensus 16 ~~~~~~fw~~~~~d~~~gg~~~~l~~~-g~~~~~~k~~~~~ar----~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~ 90 (384)
T cd00249 16 LEDLLPFWLEAGLDREAGGFFECLDRD-GQPFDTDRRLWLQAR----QVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGR 90 (384)
T ss_pred HHHHHHHHHhcCCCCCCCCeEEEECCC-CCCCCCCCeEEEecH----HHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCc
Confidence 456666666532 11134676654321 001111233444333 344665789999999999999999999998664
Q ss_pred hhh-hcc--cccccccccCCCC-----CchhHHHHHHHHhcCCHHHHHHHhhccc---cccccc---c--cccC--CCCC
Q 044240 273 KVI-RKY--SVARHWQYLNEEP-----GGMNDVLYRLFSITKDPRHLFLAHLFAK---PCFLGL---L--AVQS--NDIS 334 (859)
Q Consensus 273 ~~~-~~~--~~~~~~~~l~~E~-----GGmneaL~~LY~~TGd~ryL~LA~~f~~---~~~~~~---l--a~~~--d~l~ 334 (859)
... .++ ...+-+.+..... .=+..+|.++|++|||++||++|+...+ ..|... . .... ...+
T Consensus 91 d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~ 170 (384)
T cd00249 91 DPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGTPPYR 170 (384)
T ss_pred CCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCC
Confidence 311 111 0000011111100 0123688899999999999999966431 222100 0 0001 1112
Q ss_pred CCcccCCcceeeehhhHHHhcCchHHHHHHHHHHHHhhccCeEe--ecCCCCCCCCCCCCcccccCCcccccchhhHHHH
Q 044240 335 DFHVNTHIPLVIGTQRRYELTGELLHKEMGTFFMDLVNSSHTYA--TGGTSVGEFWRDPKRLATTLGTNNEESCTTYNML 412 (859)
Q Consensus 335 ~~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~y~--TGG~g~~E~f~~~~~l~~~l~~~~~ETCas~nml 412 (859)
+ .|.|.-.+.+...+|++|||+.|++.++..++.+.+ +.+- .|++ .|++..+..+.........+---..+++
T Consensus 171 ~--~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~-~~~~~~~G~~--~e~~~~~~~~~~~~~~~~~~Pgh~~e~a 245 (384)
T cd00249 171 G--SNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILD-RFIDAESGVV--REHFDEDWNPYNGDKGRHQEPGHQFEWA 245 (384)
T ss_pred C--CChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HhcCcccCeE--EEEECCCCCCCcCcCCCcCCCchHHHHH
Confidence 2 233333456677889999999999999999998875 3432 4444 2555332221110011112222234456
Q ss_pred HHHHHhhcccCCchHHHHHHHHHhhhhhccc-CCCCCCcEEE-ecC
Q 044240 413 KVSRNLFRWTKESAYADFYERALINGVLSIQ-RGTSPGVMIY-MLP 456 (859)
Q Consensus 413 kl~~~Lf~~tgd~~YaD~~ERalyN~vLa~q-~~~~~g~~~Y-~~P 456 (859)
++.-+|.++++|.+|.+.++++ ++.++... ++ +.|.++| +.+
T Consensus 246 ~~ll~l~~~~~~~~~~~~a~~~-~~~~~~~~~d~-~~G~~~~~~~~ 289 (384)
T cd00249 246 WLLLRIASRSGQAWLIEKARRL-FDLALALGWDP-ERGGLYYSFLD 289 (384)
T ss_pred HHHHHHHhhcCCHHHHHHHHHH-HHHHHHhCcCc-cCCCEEEeeEC
Confidence 6777788889999999999886 46766643 43 5566766 544
No 7
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=97.83 E-value=4.4e-05 Score=86.62 Aligned_cols=191 Identities=15% Similarity=0.079 Sum_probs=103.7
Q ss_pred hhhHHHhHHHHHHHHhCChhHHHHHHHHHHHHHHHhhh-hhhc------c-cccccccccCCCCCchhHHHHHHHHhcCC
Q 044240 236 TIHKILAGLLDQYKYADNAHALKMATRMVEYFYNRVQK-VIRK------Y-SVARHWQYLNEEPGGMNDVLYRLFSITKD 307 (859)
Q Consensus 236 ~~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~-~~~~------~-~~~~~~~~l~~E~GGmneaL~~LY~~TGd 307 (859)
..|. +..++|+|+.+|+++..+++.+........... ..+. + .+..| +-+++.++|++||+
T Consensus 38 ~a~~-~~~~~d~~~~t~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DD~aw----------~~la~l~aye~t~~ 106 (370)
T PF03663_consen 38 QAVM-LSALIDYYRRTGDPTYNDLIQNALLNQRGPNYDSYNPSNGSGDRYYDDNAW----------WALALLRAYELTGD 106 (370)
T ss_dssp HHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTSSS--S------BHHHHHH----------HHHHHHHHHHHH--
T ss_pred HHHH-HHHHHHHHHHhCcchHHHHHHHHHHHHhcccccccccccccccCccChHHH----------HHHHHHHHHHhhCC
Confidence 4554 567889999999999888888777666543211 1000 0 00111 13789999999999
Q ss_pred H-----HHHHHHhhcccc---ccccc-----ccccCCC----CCCCcccCCcceeeehhhHHHhcCchHHHHHHHHHHHH
Q 044240 308 P-----RHLFLAHLFAKP---CFLGL-----LAVQSND----ISDFHVNTHIPLVIGTQRRYELTGELLHKEMGTFFMDL 370 (859)
Q Consensus 308 ~-----ryL~LA~~f~~~---~~~~~-----la~~~d~----l~~~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~ 370 (859)
+ +||++|+...+. .+... +-..... .....+.+..|.++.++++|++|||+.|++.|++.|+.
T Consensus 107 ~~~~~~~yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A~~~~~W 186 (370)
T PF03663_consen 107 QPSDNPKYLDLAKEIFDFLISGWDDTSCGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQTYLDWAKKIYDW 186 (370)
T ss_dssp H-----HHHHHHHHHHHHHHHTB-SGG-GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHhcCCccCCCCccccccccCCCCCcccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 9 999999886421 11111 0000000 00011122333456689999999999999999999999
Q ss_pred hhccCeE-e-ecCCCCCCCCCCCCcccccCCcccccchhhHHHHHHHHHhhcccCCc-hHHHHHHHHHhhhhhcc
Q 044240 371 VNSSHTY-A-TGGTSVGEFWRDPKRLATTLGTNNEESCTTYNMLKVSRNLFRWTKES-AYADFYERALINGVLSI 442 (859)
Q Consensus 371 V~~~h~y-~-TGG~g~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~-~YaD~~ERalyN~vLa~ 442 (859)
+.+.+++ . +|-+-. .......-.+ .....=|=++--+|.-+..|++.|++. .|.|..++++ |+++..
T Consensus 187 ~~~~~L~d~~~g~v~D--g~~~~~~c~~--~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la-~~~~~~ 256 (370)
T PF03663_consen 187 MRDSGLIDPSTGLVYD--GINIDGNCTN--INKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLA-DAAINH 256 (370)
T ss_dssp HHH-HHB--TTS-B----EE-TTSSS-B---TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHH-HHHHHH
T ss_pred hhcceeEECCCcEEEe--CCccCCCCCc--CCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHH-HHHHHH
Confidence 9864443 1 111100 0000000000 112223344455788899999999766 9999999988 666655
No 8
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=97.80 E-value=0.00032 Score=83.13 Aligned_cols=241 Identities=16% Similarity=0.110 Sum_probs=130.9
Q ss_pred ChhHHHHHHHHHHHHHHHhhh--CCCcccccc-C--Cchhhhcc--ccCCCcccchhhhHHHhHHHHHHHHhCChhHHHH
Q 044240 187 NDTLKEKMSAVVSALSHCQKK--IGSGYLSAF-P--SRYFDHLE--ALKPVWAPYYTIHKILAGLLDQYKYADNAHALKM 259 (859)
Q Consensus 187 D~~L~~k~d~~Vd~l~~~Q~~--~~dGYL~a~-~--~~~~~r~~--~l~~~w~pyy~~HkI~aGLld~y~~tG~~~aL~v 259 (859)
|.-++++.+...+.++..|.. ...+...+. + ......|+ .....|.--..+|-| .|+.-.|..++|+++++.
T Consensus 6 ~~~~~~~~~~~~~~~l~~~~d~ll~~~r~~agl~~~~~~~g~we~~~~~~~~~~~~~g~wl-~a~a~~~~~~~D~~l~~~ 84 (520)
T PF07944_consen 6 DGFWKRRQELNRAYLLPLDPDRLLYNFRSHAGLPNFAIAYGGWEGEFPGWWFRGHDVGKWL-EAAAYAYAYTGDPELKAK 84 (520)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHhhhcCcccCCCCccccCCCCccCCCCCccCCCcHHHHH-HHHHHHHHHCCCHHHHHH
Confidence 455666666666666655531 022332221 1 11122333 111222223344445 566578889999999999
Q ss_pred HHHHHHHHHHHhhh--hhhccc------ccccccc-cCCCC--CchhHHHHHHHHhcCCHHHHHHHhhccccc--ccccc
Q 044240 260 ATRMVEYFYNRVQK--VIRKYS------VARHWQY-LNEEP--GGMNDVLYRLFSITKDPRHLFLAHLFAKPC--FLGLL 326 (859)
Q Consensus 260 a~~~ad~~~~~~~~--~~~~~~------~~~~~~~-l~~E~--GGmneaL~~LY~~TGd~ryL~LA~~f~~~~--~~~~l 326 (859)
+.++.|.+.+.-.+ .+..+. ....|.. .|+-+ |-|.++|+.-|+.||+++.|+.|.++.+-- ....+
T Consensus 85 ~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~ 164 (520)
T PF07944_consen 85 ADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDYYEATGNERALDVATKLADWVYRRLSRL 164 (520)
T ss_pred HHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccC
Confidence 99999999865321 011111 1122322 11111 225689999999999999999998885411 01111
Q ss_pred cccCCCCCCCcccCCcceeeehhhHHHhcCchHHHHHHHHHHHHhhccCeEeecCCCCCCCCCCCCcccccCCcccccch
Q 044240 327 AVQSNDISDFHVNTHIPLVIGTQRRYELTGELLHKEMGTFFMDLVNSSHTYATGGTSVGEFWRDPKRLATTLGTNNEESC 406 (859)
Q Consensus 327 a~~~d~l~~~HanthiP~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~y~TGG~g~~E~f~~~~~l~~~l~~~~~ETC 406 (859)
+.+.........|.=+.++.+++|++|||++|++.|+.|.+.-...- .+ .+.. .+.++.. .....+..
T Consensus 165 --~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~------~~-~~~~--~d~~~~~-~a~~~~~h 232 (520)
T PF07944_consen 165 --GPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDP------YD-LAYG--QDHLPGR-HANTHIGH 232 (520)
T ss_pred --CHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------Cc-hhhc--CccCCCc-cccceeeE
Confidence 01111011112232234678899999999999999999998532111 00 0111 1122221 11222223
Q ss_pred hh--HHHHHHHHHhhcccCCchHHHHHHHHHhhhhh
Q 044240 407 TT--YNMLKVSRNLFRWTKESAYADFYERALINGVL 440 (859)
Q Consensus 407 as--~nmlkl~~~Lf~~tgd~~YaD~~ERalyN~vL 440 (859)
+. .-+.+-.-.+++.|||.+|.+..|+..-|-+-
T Consensus 233 ~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~ 268 (520)
T PF07944_consen 233 AVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVR 268 (520)
T ss_pred EEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 22 33555566889999999999999998765443
No 9
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=97.70 E-value=0.00016 Score=82.16 Aligned_cols=187 Identities=14% Similarity=0.131 Sum_probs=103.5
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCccccccCCchhhhccccCCCcccchhhhH-HHhHHHHHHH
Q 044240 171 VGHYLSASALMWASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPSRYFDHLEALKPVWAPYYTIHK-ILAGLLDQYK 249 (859)
Q Consensus 171 ~Gh~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~~~r~~~l~~~w~pyy~~Hk-I~aGLld~y~ 249 (859)
.|+.++++...+..++|+++++.+...+.....-.. +-|...... -..||.-.- +-.+++++|+
T Consensus 38 ~a~~~~~~~d~~~~t~d~~y~~~~~~~~~~~~~~~~---~~~~~~~~~------------~~~~~DD~aw~~la~l~aye 102 (370)
T PF03663_consen 38 QAVMLSALIDYYRRTGDPTYNDLIQNALLNQRGPNY---DSYNPSNGS------------GDRYYDDNAWWALALLRAYE 102 (370)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT---SSS--S------------------BHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhcccc---ccccccccc------------ccCccChHHHHHHHHHHHHH
Confidence 388899999999999998888888877666543331 113222100 001221111 2346679999
Q ss_pred HhCCh-----hHHHHHHHHHHHHHHHhhhhhhcccccccccccCCCC----------CchhHHHHHHHHhcCCHHHHHHH
Q 044240 250 YADNA-----HALKMATRMVEYFYNRVQKVIRKYSVARHWQYLNEEP----------GGMNDVLYRLFSITKDPRHLFLA 314 (859)
Q Consensus 250 ~tG~~-----~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~----------GGmneaL~~LY~~TGd~ryL~LA 314 (859)
.||++ +.|+.|+...+++..+.-... -...-+|.....+. |......++||++|||++||+.|
T Consensus 103 ~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~--cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A 180 (370)
T PF03663_consen 103 LTGDQPSDNPKYLDLAKEIFDFLISGWDDTS--CGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQTYLDWA 180 (370)
T ss_dssp HH--H-----HHHHHHHHHHHHHHHTB-SGG---GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred hhCCCcchHHHHHHHHHHHHHHHHHhcCCcc--CCCCccccccccCCCCCcccccchHHHHHHHHHHHHhcCChHHHHHH
Confidence 99999 999999999999985443221 00112343110001 11236788999999999999999
Q ss_pred hhccc---c-ccccccc-ccCCCC----------CCCcccCCcceeeehhhHHHhcCch-HHHHHHHHHHHHhhcc
Q 044240 315 HLFAK---P-CFLGLLA-VQSNDI----------SDFHVNTHIPLVIGTQRRYELTGEL-LHKEMGTFFMDLVNSS 374 (859)
Q Consensus 315 ~~f~~---~-~~~~~la-~~~d~l----------~~~HanthiP~~~G~a~~Y~~TGD~-~y~~aa~~fwd~V~~~ 374 (859)
++..+ . .+.++.. .-.|.+ ...+...+..++.|++.+|+.|+++ .|++.++..-+-+.++
T Consensus 181 ~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~~~~ 256 (370)
T PF03663_consen 181 KKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAAINH 256 (370)
T ss_dssp HHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 88743 1 2322210 000111 0111222333456788999999877 9999999999998753
No 10
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0037 Score=74.68 Aligned_cols=265 Identities=18% Similarity=0.154 Sum_probs=154.6
Q ss_pred CCCCCcCCCCCccccchhhHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCccccccCCchhhhccccCCCc-c-
Q 044240 155 AYGGWEDPTSQLRGHFVGHYLSASALMWASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPSRYFDHLEALKPVW-A- 232 (859)
Q Consensus 155 ~~gGWe~~dsdl~GH~~Gh~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~~~r~~~l~~~w-~- 232 (859)
.||||-+..-.. .+|-|+-+-..+..++|++-+..+..-++.++.-== -|=-.|+ |-|+. ....| .
T Consensus 199 ~~GGfg~~pKFP----~~~~l~~Llr~~~~~~d~~~~~~~~~TL~~ma~GGI--yDhlgGG-----F~RYS-tD~~WlvP 266 (667)
T COG1331 199 EYGGFGSAPKFP----PPHLLLFLLRYSLRTGDERALDMVLRTLDAMARGGI--YDHLGGG-----FFRYS-TDREWLVP 266 (667)
T ss_pred hhCCcCCCCCCC----ChHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHccCC--ccccCCc-----eeeee-cCCceech
Confidence 467775432222 378888888888899999888888888887752210 1100111 11221 11122 1
Q ss_pred ----cchhhhHHHhHHHHHHHHhCChhHHHHHHHHHHHHHHHhhhhhhcc----cc-----cc---ccc------ccC--
Q 044240 233 ----PYYTIHKILAGLLDQYKYADNAHALKMATRMVEYFYNRVQKVIRKY----SV-----AR---HWQ------YLN-- 288 (859)
Q Consensus 233 ----pyy~~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~----~~-----~~---~~~------~l~-- 288 (859)
..|.--.++.....+|++|||+..++++....+|+.+.+...-.++ .. +. -|. .+.
T Consensus 267 HFEKMLyDnA~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~sp~ggFyss~DAD~~g~EG~~Y~Ws~eEi~~~Lg~d 346 (667)
T COG1331 267 HFEKMLYDNALLLRAYAEAYRATGDDLYRRAAEGILDYLLRELYSPEGGFYSSLDADSDGEEGKYYTWSVEELKEVLGED 346 (667)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCceeecccccCcccCCCeeecCHHHHHHHhccc
Confidence 2455555777777999999999999999999999987653210000 00 00 000 000
Q ss_pred ---------------CC-------------------------------------------------CCchhHHHHHHHHh
Q 044240 289 ---------------EE-------------------------------------------------PGGMNDVLYRLFSI 304 (859)
Q Consensus 289 ---------------~E-------------------------------------------------~GGmneaL~~LY~~ 304 (859)
.| -|=|..+|++.++.
T Consensus 347 ~~~~~~~f~vs~~GnfeGrnvL~~~~~~~~~~~~~~~~l~~~r~kL~~~R~~R~~P~~Ddkvlt~wNglmi~aLa~a~~~ 426 (667)
T COG1331 347 AELACKYFDVSEEGNFEGRNVLHVPGPLEEAIEEAEEKLERAREKLLAAREKRKQPSRDDKVLTDWNGLMIAALAEAGRV 426 (667)
T ss_pred HHHHHHHcccCCCCCcCCceeecccCchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCCcceeeccHHHHHHHHHHHHHH
Confidence 00 12255799999999
Q ss_pred cCCHHHHHHHhhcc---cccccccccccCCCCCCCcccCCc----------ceeeehhhHHHhcCchHHHHHHHHHHHHh
Q 044240 305 TKDPRHLFLAHLFA---KPCFLGLLAVQSNDISDFHVNTHI----------PLVIGTQRRYELTGELLHKEMGTFFMDLV 371 (859)
Q Consensus 305 TGd~ryL~LA~~f~---~~~~~~~la~~~d~l~~~Hanthi----------P~~~G~a~~Y~~TGD~~y~~aa~~fwd~V 371 (859)
+||++|+++|++-. ...+.. |.|...+-.... -.+.|...+|++|+|.+|++.|+.+++.+
T Consensus 427 ~~d~~~l~~A~~~~~fi~~~l~~------~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~~L~~~~ 500 (667)
T COG1331 427 LGDPEYLEAAERAADFILDNLYV------DRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAIELADEA 500 (667)
T ss_pred cCChHHHHHHHHHHHHHHHhhcc------cchheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 99999999998753 222211 122211111211 12467888899999999999999999998
Q ss_pred hccCeEeecCC----CCCCCC-CCCCcccccCCcccccchhhHHHHHHHHHhhcccCCchHHHHHHHHH--hhhhhcc
Q 044240 372 NSSHTYATGGT----SVGEFW-RDPKRLATTLGTNNEESCTTYNMLKVSRNLFRWTKESAYADFYERAL--INGVLSI 442 (859)
Q Consensus 372 ~~~h~y~TGG~----g~~E~f-~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~ERal--yN~vLa~ 442 (859)
...--=..||+ +.+|.. ..+... .+.-.++=+++.. .-.-+|-++|||.+|.|..|++| +=+.+..
T Consensus 501 i~~f~d~~gGf~~t~~~~~~l~ir~~~~----~D~a~~S~na~~~-~~L~~Ls~ltg~~~y~e~A~~~L~a~~~~~~~ 573 (667)
T COG1331 501 IADFWDDEGGFYDTPSDSEDLLIRPKEP----TDGATPSGNAVAA-QALLRLSLLTGDARYLEAAEDILQAFAGLAER 573 (667)
T ss_pred HHHhcCCCCCcccCCCcccccccCCCCC----CCCCCCCHHHHHH-HHHHHHHhhcCchhHHHHHHHHHHHHHHHHHh
Confidence 74222222342 122222 111111 1222344444333 33445678899999999999998 5554444
No 11
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=97.58 E-value=0.002 Score=70.79 Aligned_cols=173 Identities=17% Similarity=0.074 Sum_probs=111.0
Q ss_pred HHhHHHHHHHHhCChhHHHHHHHHHHHHHHHhhhhhhccccccccc--------ccCCCCCchhHHHHHHHHhcCCHHHH
Q 044240 240 ILAGLLDQYKYADNAHALKMATRMVEYFYNRVQKVIRKYSVARHWQ--------YLNEEPGGMNDVLYRLFSITKDPRHL 311 (859)
Q Consensus 240 I~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~--------~l~~E~GGmneaL~~LY~~TGd~ryL 311 (859)
++..++..|+. ++++.++++.+.++++.+...+. + . ...|. ..|. ..|+..+|.+||+.|||++|+
T Consensus 88 ~~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~--~-~-~~~~~~~~~~~~G~~hG-~aGi~~~L~~l~~~t~d~~~l 161 (321)
T cd04791 88 IGLALLYFART-GDPALLEAAAKIAELLAEALERG--D-P-ALLWPDFDRVDHGLLHG-WAGIALFLLRLYKATGDSRYL 161 (321)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhcc--c-c-ccccccCCCCCCccccC-cHHHHHHHHHHHHHHCCHHHH
Confidence 55567777888 99999999999999998654321 0 0 00110 1121 126889999999999999999
Q ss_pred HHHhhcccc---ccccccc---ccCCCCCCCcccCCcce--eeehhhHHHhcCchHHHHHHHHHHHHhhccCeEeecCCC
Q 044240 312 FLAHLFAKP---CFLGLLA---VQSNDISDFHVNTHIPL--VIGTQRRYELTGELLHKEMGTFFMDLVNSSHTYATGGTS 383 (859)
Q Consensus 312 ~LA~~f~~~---~~~~~la---~~~d~l~~~HanthiP~--~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~y~TGG~g 383 (859)
+.|+...+. .+..... ...+......+-.|... +....++|++++|++|++.++...+.+.+..
T Consensus 162 ~~A~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~-------- 233 (321)
T cd04791 162 ELAEEALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAALSSC-------- 233 (321)
T ss_pred HHHHHHHHHHHHhhccCCCCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh--------
Confidence 999876431 1111000 00000000001112221 1224566899999999999999888876421
Q ss_pred CCCCCCCCCcccccCCcccccchhhHHHHHHHHHhhcccCCchHHHHHHHHHhhhhhcc
Q 044240 384 VGEFWRDPKRLATTLGTNNEESCTTYNMLKVSRNLFRWTKESAYADFYERALINGVLSI 442 (859)
Q Consensus 384 ~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~ERalyN~vLa~ 442 (859)
+ ...+=.|.+.+++.+...+.+.++|.+|.+.+++.. ..++..
T Consensus 234 ----~-----------~~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 276 (321)
T cd04791 234 ----Y-----------ANPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLA-LYLIAT 276 (321)
T ss_pred ----c-----------cCccccCCcHhHHHHHHhhcccccChHHHHHHHHHH-HHhccc
Confidence 1 112356677888888889999999999999999876 677754
No 12
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.45 E-value=0.0034 Score=70.07 Aligned_cols=228 Identities=16% Similarity=0.126 Sum_probs=131.3
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCccccccCCchhhhccccCCCcccchhhhHHHhHHHHHHHHh
Q 044240 172 GHYLSASALMWASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPSRYFDHLEALKPVWAPYYTIHKILAGLLDQYKYA 251 (859)
Q Consensus 172 Gh~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~y~~t 251 (859)
|-++.++..+|..|+|+++++.+...++.+...+. . .. .-+. |-+-..++..|+.|
T Consensus 28 G~~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~--~-----~~----------~~d~-------~~~g~~~~~~y~~t 83 (336)
T PF07470_consen 28 GVFWYGLLEAYEYTGDERYLDYAERWADRFIEEDG--S-----DY----------NLDD-------HDIGFLLLDLYERT 83 (336)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--T-----TT----------SCCG-------TTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccC--C-----cc----------CCch-------hhhHHHHHHHHHHh
Confidence 77888899999999999999999999998887776 2 00 0011 11333345789999
Q ss_pred CChhHHHHHHHHHHHHHHHhhhh-hhccc---ccccccccCCCCCchh-HHHHHHHHhcCCHHHHHHHhhcccc---ccc
Q 044240 252 DNAHALKMATRMVEYFYNRVQKV-IRKYS---VARHWQYLNEEPGGMN-DVLYRLFSITKDPRHLFLAHLFAKP---CFL 323 (859)
Q Consensus 252 G~~~aL~va~~~ad~~~~~~~~~-~~~~~---~~~~~~~l~~E~GGmn-eaL~~LY~~TGd~ryL~LA~~f~~~---~~~ 323 (859)
|+++.++++.+.++++.++..+. ...+. ....+..++.- .|+ ..|++++++|||++|++.|..-... ..+
T Consensus 84 ~d~~y~~~~~~~a~~~l~~~~~~~~G~~~~~~~~~~~~wiD~~--~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~ 161 (336)
T PF07470_consen 84 GDEKYKDAAIQAADWLLARRPRTSDGGFWHNRPYPNQVWIDGM--YMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLY 161 (336)
T ss_dssp -THHHHHHHHHHHHHHHHTSCBECTGCBECTTTSTTEEETTHH--HHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCceeeccc--cccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhcc
Confidence 99999999999999887654321 01110 00000011110 145 7889999999999999988664321 122
Q ss_pred ccccccCCCCCCCcccCCcc---------------eeeehhhHHHhcCc-----hHHHHHHHHHHHHhhccCeEeecCCC
Q 044240 324 GLLAVQSNDISDFHVNTHIP---------------LVIGTQRRYELTGE-----LLHKEMGTFFMDLVNSSHTYATGGTS 383 (859)
Q Consensus 324 ~~la~~~d~l~~~HanthiP---------------~~~G~a~~Y~~TGD-----~~y~~aa~~fwd~V~~~h~y~TGG~g 383 (859)
++ .+.+ -.|..++.. .+.|.++.|+.+.+ +.+++.++.+.+.+.+.+- ..|
T Consensus 162 d~----~tGl-~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~-~~G--- 232 (336)
T PF07470_consen 162 DP----ETGL-YYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQD-EDG--- 232 (336)
T ss_dssp -T----TTSS-BESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTST-TTS---
T ss_pred CC----CCCc-eeeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCC-CCC---
Confidence 21 1111 123222111 13678888888643 5677777777777765432 222
Q ss_pred CCCCCCCCCcccccCCcccccchhhH----HHHHHHHHhhcccCCchHHHHHHHHHhhhhhcc
Q 044240 384 VGEFWRDPKRLATTLGTNNEESCTTY----NMLKVSRNLFRWTKESAYADFYERALINGVLSI 442 (859)
Q Consensus 384 ~~E~f~~~~~l~~~l~~~~~ETCas~----nmlkl~~~Lf~~tgd~~YaD~~ERalyN~vLa~ 442 (859)
.|...-+-+. +..+.||.+|. .+++-. ...+..+.+|.+.+||++ ++++..
T Consensus 233 ---~w~~~~~~~~--~~~~~etSatA~~a~~l~~gi--~~g~~d~~~y~~~a~~a~-~~l~~~ 287 (336)
T PF07470_consen 233 ---LWYQDLDDPD--PGNYRETSATAMFAYGLLRGI--RLGLLDPEEYRPAAEKAL-EALLSN 287 (336)
T ss_dssp ---BEBSBTTTTT--TTS-BEHHHHHHHHHHHHHHH--HTTSSTHHHHHHHHHHHH-HHHHHC
T ss_pred ---CcceecCCCC--CCCcccHHHHHHHHHHHHHHH--HcCCCccHHHHHHHHHHH-HHHHhC
Confidence 1211111111 23466766664 333311 123344678999999987 788777
No 13
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=97.43 E-value=0.0025 Score=70.10 Aligned_cols=183 Identities=15% Similarity=0.017 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCccccccCCchhhhccccCCCcccchhhhHHHhHHHHHHHHhCC
Q 044240 174 YLSASALMWASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPSRYFDHLEALKPVWAPYYTIHKILAGLLDQYKYADN 253 (859)
Q Consensus 174 ~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~y~~tG~ 253 (859)
.+-++..++.. +|+++.+.+.++++.|.+......++ . .++.. ......+..=+.+ |...|+..|+.||+
T Consensus 88 ~~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~~~~-~-~~~~~-----~~~~~G~~hG~aG--i~~~L~~l~~~t~d 157 (321)
T cd04791 88 IGLALLYFART-GDPALLEAAAKIAELLAEALERGDPA-L-LWPDF-----DRVDHGLLHGWAG--IALFLLRLYKATGD 157 (321)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhccccc-c-ccccC-----CCCCCccccCcHH--HHHHHHHHHHHHCC
Confidence 44455566666 89999999999999998765421111 1 11000 0001112222233 67788899999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhccc--ccccccccCCCCC--chhHHHHHHHHhcCCHHHHHHHhhccccccccccccc
Q 044240 254 AHALKMATRMVEYFYNRVQKVIRKYS--VARHWQYLNEEPG--GMNDVLYRLFSITKDPRHLFLAHLFAKPCFLGLLAVQ 329 (859)
Q Consensus 254 ~~aL~va~~~ad~~~~~~~~~~~~~~--~~~~~~~l~~E~G--GmneaL~~LY~~TGd~ryL~LA~~f~~~~~~~~la~~ 329 (859)
++.++.+.++.+++.+.+.+.-.+.. .+.......--+| ||..++.+||+.|+|++|++.|+...+..... .
T Consensus 158 ~~~l~~A~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~----~ 233 (321)
T cd04791 158 SRYLELAEEALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAALSS----C 233 (321)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhh----h
Confidence 99999999999998876542111110 0000000011133 78899999999999999999998875432100 0
Q ss_pred CCCCCCCcccCCcceeee--hhhHHHhcCchHHHHHHHHHHHHhhcc
Q 044240 330 SNDISDFHVNTHIPLVIG--TQRRYELTGELLHKEMGTFFMDLVNSS 374 (859)
Q Consensus 330 ~d~l~~~HanthiP~~~G--~a~~Y~~TGD~~y~~aa~~fwd~V~~~ 374 (859)
...+...|...-++ ...+++.++|+.|++.+.++.+.+..+
T Consensus 234 ----~~~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (321)
T cd04791 234 ----YANPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLALYLIAT 276 (321)
T ss_pred ----ccCccccCCcHhHHHHHHhhcccccChHHHHHHHHHHHHhccc
Confidence 00112334433222 334578999999999999988887743
No 14
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.41 E-value=0.00028 Score=80.62 Aligned_cols=127 Identities=16% Similarity=0.116 Sum_probs=87.8
Q ss_pred ccc---hhhHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCccccccCCchhhhccccCCCcccchhhhH-HHhH
Q 044240 168 GHF---VGHYLSASALMWASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPSRYFDHLEALKPVWAPYYTIHK-ILAG 243 (859)
Q Consensus 168 GH~---~Gh~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~~~r~~~l~~~w~pyy~~Hk-I~aG 243 (859)
+|+ .||-++|+.-.+..|+...+.+-+.++.|.|+..=. |. ++ =.+-|++|- |..+
T Consensus 127 ~HelY~aghLieg~va~~qaTGkr~lldV~~rlADhi~tvfg----------p~------~~----q~~g~~gH~eielA 186 (589)
T COG3533 127 NHELYCAGHLIEGGVAAHQATGKRRLLDVVCRLADHIATVFG----------PE------ED----QVPGYCGHPEIELA 186 (589)
T ss_pred chHHHHhHHHHhhhhHHHHhhCcchHHHHHHHHHHhhhhhcC----------cc------cc----ccccccCCCchhHH
Confidence 565 689999999999999999999999999888865433 00 00 124566775 8889
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCCCC-chhHHHHHHHHhcCCHHHHHHHhhccc
Q 044240 244 LLDQYKYADNAHALKMATRMVEYFYNRVQKVIRKYSVARHWQYLNEEPG-GMNDVLYRLFSITKDPRHLFLAHLFAK 319 (859)
Q Consensus 244 Lld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~G-GmneaL~~LY~~TGd~ryL~LA~~f~~ 319 (859)
|+.-|+.||+++.|+++.+|.++-.. .+. .+-..++. .+|.-+- =....+++||++|||+.+...+.+|.+
T Consensus 187 l~~Ly~~Tg~~rYL~LA~~Fi~~rg~--~P~-~~rg~e~~--~gHAvr~iyl~~G~A~l~~~~gDds~r~~~~~lW~ 258 (589)
T COG3533 187 LAELYRLTGDQRYLDLARRFIHQRGV--EPL-AQRGDELE--GGHAVRQIYLYIGAADLAEETGDDSLRQAAEFLWQ 258 (589)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhcc--Chh-hcCchhhh--hhhHHHHHHHhhhHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999886321 121 11111110 1111000 011468899999999999999999854
No 15
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=97.19 E-value=0.037 Score=65.56 Aligned_cols=78 Identities=19% Similarity=0.287 Sum_probs=58.2
Q ss_pred HHhHHHHHHHHhCChhHHHHHHHHHHHHHHHhhhhhhcccc-----------ccccc---ccCCCCCchhHHHHHHHHhc
Q 044240 240 ILAGLLDQYKYADNAHALKMATRMVEYFYNRVQKVIRKYSV-----------ARHWQ---YLNEEPGGMNDVLYRLFSIT 305 (859)
Q Consensus 240 I~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~-----------~~~~~---~l~~E~GGmneaL~~LY~~T 305 (859)
++-|||.+|..+|++..|+.|..++|-+..-|.. ..+.+. ...|. ..-.|.|.+.+-+..|.++|
T Consensus 160 ~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdT-ptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lT 238 (522)
T PTZ00470 160 VLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNE-DTGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEIT 238 (522)
T ss_pred hHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcC-CCCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhh
Confidence 5689999999999999999999999999876631 111110 11111 11246777778889999999
Q ss_pred CCHHHHHHHhhcc
Q 044240 306 KDPRHLFLAHLFA 318 (859)
Q Consensus 306 Gd~ryL~LA~~f~ 318 (859)
||++|.+.|++..
T Consensus 239 Gd~kY~~~a~~i~ 251 (522)
T PTZ00470 239 GDPKYAEYVDKVM 251 (522)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998874
No 16
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0079 Score=71.92 Aligned_cols=127 Identities=18% Similarity=0.114 Sum_probs=77.6
Q ss_pred HHhHHHHHHHHhCChhHHHHHHHHHHHHHHHhhhhhhcccccccccccC-CCCCc------hhHHHHHHHHhcCCHHHHH
Q 044240 240 ILAGLLDQYKYADNAHALKMATRMVEYFYNRVQKVIRKYSVARHWQYLN-EEPGG------MNDVLYRLFSITKDPRHLF 312 (859)
Q Consensus 240 I~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~-~E~GG------mneaL~~LY~~TGd~ryL~ 312 (859)
+..+|..+++++|+++.+++|++.++++.+.+..- .+. .+ +.-+. ...|. +..+|..||++|+|.+||+
T Consensus 416 mi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~--rl~-~~-~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~ 491 (667)
T COG1331 416 MIAALAEAGRVLGDPEYLEAAERAADFILDNLYVD--RLL-RR-YRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLE 491 (667)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccc--chh-ee-eecCcccccccchhHHHHHHHHHHHHHhhCcHHHHH
Confidence 55788899999999999999999999998765431 111 11 11111 11121 2368999999999999999
Q ss_pred HHhhcccc---ccccccccc-------CCCCC---CCcccCCcce-----eeehhhHHHhcCchHHHHHHHHHHHHh
Q 044240 313 LAHLFAKP---CFLGLLAVQ-------SNDIS---DFHVNTHIPL-----VIGTQRRYELTGELLHKEMGTFFMDLV 371 (859)
Q Consensus 313 LA~~f~~~---~~~~~la~~-------~d~l~---~~HanthiP~-----~~G~a~~Y~~TGD~~y~~aa~~fwd~V 371 (859)
.|+.+.+. .|.++. .+ ...+. ..-.-.-+|- +....++-++|||..|.+.|....+.+
T Consensus 492 ~A~~L~~~~i~~f~d~~-gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~L~a~ 567 (667)
T COG1331 492 KAIELADEAIADFWDDE-GGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDILQAF 567 (667)
T ss_pred HHHHHHHHHHHHhcCCC-CCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence 99888653 222221 11 00000 0000112221 123556679999999999887665554
No 17
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=96.87 E-value=0.0077 Score=67.44 Aligned_cols=248 Identities=15% Similarity=0.109 Sum_probs=133.8
Q ss_pred chhhHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhC-CCccccccCCchhhhccccCCCcccchhhhHHHhHHHHHH
Q 044240 170 FVGHYLSASALMWASTHNDTLKEKMSAVVSALSHCQKKI-GSGYLSAFPSRYFDHLEALKPVWAPYYTIHKILAGLLDQY 248 (859)
Q Consensus 170 ~~Gh~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~-~dGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~y 248 (859)
..+..|=..|.++. +++++.++.++.-++.|.+.-... ..||.......- -.... -.-|..--++.|+ +.+
T Consensus 22 ~q~R~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~--~~~~~----~~~Y~~af~l~al-a~~ 93 (346)
T PF07221_consen 22 VQARQLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG--PLDPQ----KDLYDQAFALLAL-AEA 93 (346)
T ss_dssp HHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE--EEE------EEHHHHHHHHHHH-HHH
T ss_pred eeHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC--CCccc----cchHHHHHHHHHH-HHH
Confidence 35777888888888 899999999999999998776422 346655543211 00001 1234444466777 448
Q ss_pred HHhCChhHHHHHHHHHHHHHHHhhhhhhccccc---ccccccCCCCCch------hHHHHHHHHhcCCHHHHHHHhhccc
Q 044240 249 KYADNAHALKMATRMVEYFYNRVQKVIRKYSVA---RHWQYLNEEPGGM------NDVLYRLFSITKDPRHLFLAHLFAK 319 (859)
Q Consensus 249 ~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~---~~~~~l~~E~GGm------neaL~~LY~~TGd~ryL~LA~~f~~ 319 (859)
.+||++++++.|.++.+.+.+++.....+.-.+ +-+... . ++ .+++..||+.|||++|++.|+.+.+
T Consensus 94 ~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~---r-~~n~~mhl~eA~l~l~~~~~~~~~~~~a~~l~~ 169 (346)
T PF07221_consen 94 RATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPP---R-GQNPHMHLLEAFLALYEATGDPRYLDRAEELLD 169 (346)
T ss_dssp HCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCB---E-EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccC---C-CCChhHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 899999999999999999998875321111000 001100 0 12 3688889999999999998877642
Q ss_pred ---cccccccc------ccCC--CCCC-CcccCCcc--eeeehhh-------HHH---hcCchHHHHHHHHHHHHhhccC
Q 044240 320 ---PCFLGLLA------VQSN--DISD-FHVNTHIP--LVIGTQR-------RYE---LTGELLHKEMGTFFMDLVNSSH 375 (859)
Q Consensus 320 ---~~~~~~la------~~~d--~l~~-~HanthiP--~~~G~a~-------~Y~---~TGD~~y~~aa~~fwd~V~~~h 375 (859)
..|.++.. ...| .+.+ .+..+-.+ +-.||.. .+. ..+++.+++.+++..+.....-
T Consensus 170 ~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~~~~a~~l~~~~~~~G 249 (346)
T PF07221_consen 170 LFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDWLERARRLFDFALEHG 249 (346)
T ss_dssp HHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhe
Confidence 12222110 0000 0000 00000001 1234222 222 5577888888888777765422
Q ss_pred eEeecC-CCCCCCCCCCCcccccCCcccccchhhHHHHHHHHHhhcccCCchHHHHHHHHH
Q 044240 376 TYATGG-TSVGEFWRDPKRLATTLGTNNEESCTTYNMLKVSRNLFRWTKESAYADFYERAL 435 (859)
Q Consensus 376 ~y~TGG-~g~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~ERal 435 (859)
.-..|| +-. ....... ......-.=...+.|+-+-.+++.|||.+|.+.++++.
T Consensus 250 ~d~~~gG~~~--~~d~~g~----~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~ 304 (346)
T PF07221_consen 250 WDREGGGLFY--SVDRDGK----PPDRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVW 304 (346)
T ss_dssp BSTTTSSB-S--EEETTS-----BSST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred EecCCCeEEE--EEeCCCC----ccccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 212222 211 0000000 01111112233555666677888999999999988876
No 18
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=96.65 E-value=0.057 Score=67.65 Aligned_cols=219 Identities=15% Similarity=0.070 Sum_probs=129.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHhhhC-CCccccccCCchhhhccccCCCcccchhhhHHHhHHHHHHHHhCChhH
Q 044240 178 SALMWASTHNDTLKEKMSAVVSALSHCQKKI-GSGYLSAFPSRYFDHLEALKPVWAPYYTIHKILAGLLDQYKYADNAHA 256 (859)
Q Consensus 178 ~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~-~dGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~y~~tG~~~a 256 (859)
+..++..++|+.+++.+.++++.+.+..... ..+++++. ++ +...|+..|+.+++++.
T Consensus 550 L~~l~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~D~~~G~-------------------aG--ii~~Ll~l~~~~~~~~~ 608 (825)
T cd04792 550 LTHLGKLLKDDRLLNLAKEILDLIDELIEKDEKLDFISGA-------------------AG--LILVLLSLYELFLSERF 608 (825)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhccccCCCEeeec-------------------HH--HHHHHHHHHhccCChHH
Confidence 3445556899999999999998876654310 11222221 22 44567788999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccc-ccccccccCCCCC--chhHHHHHHHHhcCCHHHHHHHhhcccc--cccccccc--c
Q 044240 257 LKMATRMVEYFYNRVQKVIRKYS-VARHWQYLNEEPG--GMNDVLYRLFSITKDPRHLFLAHLFAKP--CFLGLLAV--Q 329 (859)
Q Consensus 257 L~va~~~ad~~~~~~~~~~~~~~-~~~~~~~l~~E~G--GmneaL~~LY~~TGd~ryL~LA~~f~~~--~~~~~la~--~ 329 (859)
++++.+.++++.+...+.-.... .+.. ....--+| |+..+|.+||+.|+|++|++.|+...+. ..+.+... .
T Consensus 609 l~~a~~~~~~l~~~~~~~~~~~~~~~~~-~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~w~ 687 (825)
T cd04792 609 LDLALKCGDHLLENASNEDGGIGPAEQP-NLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNWP 687 (825)
T ss_pred HHHHHHHHHHHHHhhhhccCCccccccc-ccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcCCC
Confidence 99999999998754322100000 0000 00111234 7889999999999999999998776431 11110000 0
Q ss_pred CCC-CCCCcccCCccee--eehhhHHHh--cCchHHHHHHHHHHHHhhccCeEeecCCCCCCCCCCCCcccccCCccccc
Q 044240 330 SND-ISDFHVNTHIPLV--IGTQRRYEL--TGELLHKEMGTFFMDLVNSSHTYATGGTSVGEFWRDPKRLATTLGTNNEE 404 (859)
Q Consensus 330 ~d~-l~~~HanthiP~~--~G~a~~Y~~--TGD~~y~~aa~~fwd~V~~~h~y~TGG~g~~E~f~~~~~l~~~l~~~~~E 404 (859)
.+. ....-.-.|...- ......++. .+|+.+.+.+....+.+.++ . +. ...+=
T Consensus 688 ~~~~~~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~-~-----------~~----------~~~sl 745 (825)
T cd04792 688 RKDGNSFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKTTLKE-G-----------FG----------NNHSL 745 (825)
T ss_pred CcCcCCCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHh-c-----------CC----------CCCee
Confidence 000 0000012233322 224455777 68888888777776655421 0 10 11334
Q ss_pred chhhHHHHHHHHHhhcccCCchHHHHHHHHHhhhhhc
Q 044240 405 SCTTYNMLKVSRNLFRWTKESAYADFYERALINGVLS 441 (859)
Q Consensus 405 TCas~nmlkl~~~Lf~~tgd~~YaD~~ERalyN~vLa 441 (859)
.|...+.+.+...+.+.++|.+|.+.+++.+ +.++.
T Consensus 746 CHG~~Gil~~ll~~~~~~~~~~~~~~a~~~~-~~l~~ 781 (825)
T cd04792 746 CHGDLGNLEILLYAAKAFGDEKLQELANSLA-IKVLS 781 (825)
T ss_pred cCCCcchHHHHHHHHHhcCCHHHHHHHHHHH-HHHHH
Confidence 6677788888888899999999998888775 34443
No 19
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=96.42 E-value=0.18 Score=55.20 Aligned_cols=224 Identities=15% Similarity=0.044 Sum_probs=132.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHhhh----CCCccccccCCchhhhccccCCCcccchhhhHHHhHHHHHHHHhC
Q 044240 177 ASALMWASTHNDTLKEKMSAVVSALSHCQKK----IGSGYLSAFPSRYFDHLEALKPVWAPYYTIHKILAGLLDQYKYAD 252 (859)
Q Consensus 177 A~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~----~~dGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~y~~tG 252 (859)
++..++..++|+++.+.+.++++.+.+.-.. ...+++... ++ ++..|+..|+.++
T Consensus 58 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~G~-------------------aG--~~~~ll~~~~~~~ 116 (343)
T cd04434 58 ALAALSKGLGDQELLKELLELLLLLVELILEDLKDLNYDLLSGL-------------------AG--LLLALLLLYKTFG 116 (343)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhcccCCCCcceeech-------------------HH--HHHHHHHHHHhcC
Confidence 4445555679999999999998887764320 011221111 22 5567777888889
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhcccc---cccccc-cCCCCC--chhHHHHHHHHhcCCHHHHHHHhhccc---cccc
Q 044240 253 NAHALKMATRMVEYFYNRVQKVIRKYSV---ARHWQY-LNEEPG--GMNDVLYRLFSITKDPRHLFLAHLFAK---PCFL 323 (859)
Q Consensus 253 ~~~aL~va~~~ad~~~~~~~~~~~~~~~---~~~~~~-l~~E~G--GmneaL~~LY~~TGd~ryL~LA~~f~~---~~~~ 323 (859)
++..++++.+.++++.+...+....... ...... ..--+| |+..+|..+|+.|.++.+.++++.... ..+.
T Consensus 117 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (343)
T cd04434 117 EEIFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYERRLQD 196 (343)
T ss_pred CcCHHHHHHHHHHHHHHhhhhccCCCceeeeccCCccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHccC
Confidence 9999999999999998754332111000 000000 111233 788999999999988888887765432 1110
Q ss_pred cccc-----ccCCCCCCCcccCCcce--eeehhhHHHhcCchHHHHHHHHHHHHhhccCeEeecCCCCCCCCCCCCcccc
Q 044240 324 GLLA-----VQSNDISDFHVNTHIPL--VIGTQRRYELTGELLHKEMGTFFMDLVNSSHTYATGGTSVGEFWRDPKRLAT 396 (859)
Q Consensus 324 ~~la-----~~~d~l~~~HanthiP~--~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~y~TGG~g~~E~f~~~~~l~~ 396 (859)
.... ...+.......-.|... +......|+.++|+.+.+.++...+.+.++... +
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---------- 258 (343)
T cd04434 197 DSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGLL--------E---------- 258 (343)
T ss_pred CCCCCCCCCCCCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhc--------c----------
Confidence 0000 00000000111123332 223556689999999999888777766542210 0
Q ss_pred cCCcccccchhhHHHHHHHHHhhcccCCchHHHHHHHHHhhhhhcc
Q 044240 397 TLGTNNEESCTTYNMLKVSRNLFRWTKESAYADFYERALINGVLSI 442 (859)
Q Consensus 397 ~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~ERalyN~vLa~ 442 (859)
....+=.|...+.+....+|.+.+++.+|.+..++.. +.++..
T Consensus 259 --~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~-~~~~~~ 301 (343)
T cd04434 259 --LKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALA-LLLISH 301 (343)
T ss_pred --CCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHH-HHHHHH
Confidence 1223456677888889999999999999999886665 555543
No 20
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=96.00 E-value=0.033 Score=62.36 Aligned_cols=184 Identities=20% Similarity=0.217 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhC-CCccccccCCchhhhccccCCCcccc--hh--hhHHHhHHHHH
Q 044240 173 HYLSASALMWASTHNDTLKEKMSAVVSALSHCQKKI-GSGYLSAFPSRYFDHLEALKPVWAPY--YT--IHKILAGLLDQ 247 (859)
Q Consensus 173 h~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~-~dGYL~a~~~~~~~r~~~l~~~w~py--y~--~HkI~aGLld~ 247 (859)
..|-|+|. +..++|++.++.++++++.|.+.-... ..||...++. .|.+. .+ .|++. ++++.
T Consensus 85 f~l~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~-----------~~~~~r~~n~~mhl~e-A~l~l 151 (346)
T PF07221_consen 85 FALLALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDP-----------DWSPPRGQNPHMHLLE-AFLAL 151 (346)
T ss_dssp HHHHHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETT-----------TSSCBEEHHHHHHHHH-HHHHH
T ss_pred HHHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCC-----------ccccCCCCChhHHHHH-HHHHH
Confidence 45778888 778999999999999999987774311 2345444322 12111 22 46665 44589
Q ss_pred HHHhCChhHHHHHHHHHHHHHHHhhhhhhcccc---cccccccC------------CCCCchhH---HHHHHH--HhcCC
Q 044240 248 YKYADNAHALKMATRMVEYFYNRVQKVIRKYSV---ARHWQYLN------------EEPGGMND---VLYRLF--SITKD 307 (859)
Q Consensus 248 y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~---~~~~~~l~------------~E~GGmne---aL~~LY--~~TGd 307 (859)
|+++|+++.++.+.++.+.+.+++-..-.+... ...|.+.. .|.|=.-| -|.++. ...++
T Consensus 152 ~~~~~~~~~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~ 231 (346)
T PF07221_consen 152 YEATGDPRYLDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGD 231 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhccccc
Confidence 999999999999999999998665421111111 11233321 12221113 344444 34588
Q ss_pred HHHHHHHhhcccccccccccccCCCCC-CC----cccCCcce-----------eeehhhHHHhcCchHHHHHHHHHHHHh
Q 044240 308 PRHLFLAHLFAKPCFLGLLAVQSNDIS-DF----HVNTHIPL-----------VIGTQRRYELTGELLHKEMGTFFMDLV 371 (859)
Q Consensus 308 ~ryL~LA~~f~~~~~~~~la~~~d~l~-~~----HanthiP~-----------~~G~a~~Y~~TGD~~y~~aa~~fwd~V 371 (859)
+++++.|..+....+ ..+-|.-. ++ ..+.+.+. +.+.+.+|+.|||+.|++.+++.|+.+
T Consensus 232 ~~~~~~a~~l~~~~~----~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~~~~ 307 (346)
T PF07221_consen 232 PDWLERARRLFDFAL----EHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVWDYI 307 (346)
T ss_dssp HTHHHHHHHHHHHHH----HHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 899988866543211 11111110 11 11222221 356888899999999999999999988
Q ss_pred hc
Q 044240 372 NS 373 (859)
Q Consensus 372 ~~ 373 (859)
.+
T Consensus 308 ~~ 309 (346)
T PF07221_consen 308 FR 309 (346)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 21
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=95.68 E-value=0.12 Score=57.76 Aligned_cols=187 Identities=16% Similarity=0.177 Sum_probs=95.8
Q ss_pred HHhHHHHHHHHhCChhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCCCCchhHHHHHHHHhcCCHHHHHHHhhccc
Q 044240 240 ILAGLLDQYKYADNAHALKMATRMVEYFYNRVQKVIRKYSVARHWQYLNEEPGGMNDVLYRLFSITKDPRHLFLAHLFAK 319 (859)
Q Consensus 240 I~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~f~~ 319 (859)
+..||+..|++||+++.++.+.+.++.+.....+. .....+ .+-..+..+|++|||++|++.+....+
T Consensus 30 ~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~~~---~~~d~~---------~~g~~~~~~y~~t~d~~y~~~~~~~a~ 97 (336)
T PF07470_consen 30 FWYGLLEAYEYTGDERYLDYAERWADRFIEEDGSD---YNLDDH---------DIGFLLLDLYERTGDEKYKDAAIQAAD 97 (336)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTT---TSCCGT---------THHHHHHHHHHHH-THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccCCc---cCCchh---------hhHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55789999999999999999999888876544320 011111 123566789999999999998877644
Q ss_pred ccccccccccCCCCCC-CcccCC-cce-e----ee---hhhHHHhcCchHHHHHHHHHHHHhhccCeE--eecCCCCCCC
Q 044240 320 PCFLGLLAVQSNDISD-FHVNTH-IPL-V----IG---TQRRYELTGELLHKEMGTFFMDLVNSSHTY--ATGGTSVGEF 387 (859)
Q Consensus 320 ~~~~~~la~~~d~l~~-~Hanth-iP~-~----~G---~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~y--~TGG~g~~E~ 387 (859)
.-+.. ..+..-.+ .|.... ..+ + +. .+..+++|||++|++.+.+-++...+ +.| .||-.-.+..
T Consensus 98 ~~l~~---~~~~~~G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~-~~~d~~tGl~~h~~~ 173 (336)
T PF07470_consen 98 WLLAR---RPRTSDGGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRK-YLYDPETGLYYHGYT 173 (336)
T ss_dssp HHHHT---SCBECTGCBECTTTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHH-HHB-TTTSSBESEEE
T ss_pred HHHHh---CCCCCCCccccCCCCCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHH-hccCCCCCceeeccC
Confidence 11100 00101111 121111 111 1 12 45568999999998887766555543 222 1221100000
Q ss_pred CCCCCcccccCCcccccchhhHHHHHHHHHhhc-ccCCchHHHHHHHHHhhhhhcccC
Q 044240 388 WRDPKRLATTLGTNNEESCTTYNMLKVSRNLFR-WTKESAYADFYERALINGVLSIQR 444 (859)
Q Consensus 388 f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~-~tgd~~YaD~~ERalyN~vLa~q~ 444 (859)
.....+.+...-. -.-.=+.+++..+.+.|=. .+....+.+.+++.+ +++..-|+
T Consensus 174 ~~~~~~~s~~~Ws-RG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~-~~l~~~q~ 229 (336)
T PF07470_consen 174 YQGYADWSDSFWS-RGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLA-DALARYQD 229 (336)
T ss_dssp TTSSSTTST--BH-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-HHHHTTST
T ss_pred CCCCcCcccccCc-chhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH-HHHHhcCC
Confidence 0000000000000 0112244666666666533 233477888888888 55777775
No 22
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=95.43 E-value=0.26 Score=55.29 Aligned_cols=192 Identities=14% Similarity=0.066 Sum_probs=109.9
Q ss_pred hhHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHhhhCCCccccccCCchhhhcccc-CCCcccchhhhHHHhHHHHHHH
Q 044240 172 GHYLSASALMWASTHN-DTLKEKMSAVVSALSHCQKKIGSGYLSAFPSRYFDHLEAL-KPVWAPYYTIHKILAGLLDQYK 249 (859)
Q Consensus 172 Gh~LsA~a~~~a~t~D-~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~~~r~~~l-~~~w~pyy~~HkI~aGLld~y~ 249 (859)
.=+|.++..++..+++ +.+.+.++.+++.+.+.-+...+......+. .+ .|.+. .-.|+-=.++ |+..|+..+.
T Consensus 104 aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~-~~-~~~~~~~~G~aHG~aG--I~~~L~~~~~ 179 (343)
T cd04794 104 AGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPL-MY-EWHGKEYLGAAHGLAG--ILYILLQTPL 179 (343)
T ss_pred HHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCc-cc-cccCceecchhhhHHH--HHHHHHhhhh
Confidence 4467777777877873 4577788888887666522112221111110 00 01100 0111111122 6667778888
Q ss_pred HhCChhHHHHHHHHHHHHHHHhhhhhhcccc--cc--cccccCCCCC--chhHHHHHHHHhcCCHHHHHHHhhccccccc
Q 044240 250 YADNAHALKMATRMVEYFYNRVQKVIRKYSV--AR--HWQYLNEEPG--GMNDVLYRLFSITKDPRHLFLAHLFAKPCFL 323 (859)
Q Consensus 250 ~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~--~~--~~~~l~~E~G--GmneaL~~LY~~TGd~ryL~LA~~f~~~~~~ 323 (859)
.+++++.++.+.+..+|+.+...+. ..++. .. .....+-=+| |+..++..+|+.++|+++++.|+.-.+..+
T Consensus 180 ~~~~~~~~~~i~~~i~~~~~~~~~~-g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~- 257 (343)
T cd04794 180 FLLKPSLAPLIKRSLDYLLSLQFPS-GNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIW- 257 (343)
T ss_pred hcCCccHHHHHHHHHHHHHHhhccC-CCCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-
Confidence 8999999999999999997642110 11110 00 0000000134 788999999999999999998877543211
Q ss_pred ccccccCCCCCCCcccCCcc--eeeehhhHHHhcCchHHHHHHHHHHHHhhcc
Q 044240 324 GLLAVQSNDISDFHVNTHIP--LVIGTQRRYELTGELLHKEMGTFFMDLVNSS 374 (859)
Q Consensus 324 ~~la~~~d~l~~~HanthiP--~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~ 374 (859)
....+..-+..-|.- +..+...+|+.|+|++|++.|..+.+.+.++
T Consensus 258 -----~~g~~~~~~~lCHG~~G~~~~lL~~~~~~~~~~~~~~a~~~~~~~~~~ 305 (343)
T cd04794 258 -----KRGLLKKGPGLCHGIAGNAYAFLLLYRLTGDLKYLYRACKFAEFLINY 305 (343)
T ss_pred -----HhCCccCCCccccCccchHHHHHHHHHHhCcHHHHHHHHHHHHHHhcc
Confidence 011111001122333 2334677799999999999999999988754
No 23
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=95.39 E-value=0.13 Score=62.95 Aligned_cols=119 Identities=16% Similarity=0.219 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCC-CccccccCCchhhhccccCCCcccchhhhHHHhHHHHHHHH
Q 044240 172 GHYLSASALMWASTHNDTLKEKMSAVVSALSHCQKKIG-SGYLSAFPSRYFDHLEALKPVWAPYYTIHKILAGLLDQYKY 250 (859)
Q Consensus 172 Gh~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~-dGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~y~~ 250 (859)
+-|+=|+...+..+.|..+.+.+...|..|..+-++.. .+|+++- ++ +..-|+..|..
T Consensus 699 ~g~~yal~~I~~~~~~~~l~~~~~~~i~~le~~v~~~~~~d~i~Gl-------------------~g--~i~~L~~iYk~ 757 (963)
T COG4403 699 SGYFYALWKIYSVTRDNYLIQSAENSIRHLEILVQKSKDPDFINGL-------------------AG--VICVLVSIYKL 757 (963)
T ss_pred chhhhhhHHHHHhcccHHHHHHHHHHHHHHHHHHhhccCcchhhcc-------------------HH--HHHHHHHHHhh
Confidence 45666888899999999999999999999888866432 2443332 11 44566788999
Q ss_pred hCChhHHHHHHHHHHHHHHHhhhhhhccccccccccc-CCCCC--chhHHHHHHHHhcCCHHHHHHHhhc
Q 044240 251 ADNAHALKMATRMVEYFYNRVQKVIRKYSVARHWQYL-NEEPG--GMNDVLYRLFSITKDPRHLFLAHLF 317 (859)
Q Consensus 251 tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l-~~E~G--GmneaL~~LY~~TGd~ryL~LA~~f 317 (859)
+..++.|++|..+++++++..-.. ++ +..++ .-.+| |+..+|..||+.|||++++..++..
T Consensus 758 ~~epk~l~~ais~~~~l~~~~v~~-----d~-s~~~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~e~ 821 (963)
T COG4403 758 TDEPKFLELAISLGRILMEKIVGN-----DS-SETVLLGFSHGASGIILTLLKLYEATGEESLLKKIKEL 821 (963)
T ss_pred ccchHHHHHHHHHHHHHHHHhhcc-----cc-ccceecccccchHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999999999999998643321 11 11222 22344 7889999999999999999998765
No 24
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=95.33 E-value=0.053 Score=60.20 Aligned_cols=115 Identities=16% Similarity=0.079 Sum_probs=71.5
Q ss_pred HHhHHHHHHHHhCChhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCCCCchhHHHHHHHHhcCCHHHHHHHhhccc
Q 044240 240 ILAGLLDQYKYADNAHALKMATRMVEYFYNRVQKVIRKYSVARHWQYLNEEPGGMNDVLYRLFSITKDPRHLFLAHLFAK 319 (859)
Q Consensus 240 I~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~f~~ 319 (859)
.+.|+..+|++||+++.|+.++..+|....+=+ ++...+.. +. +-..|.-||+.|||++||++|....+
T Consensus 41 ~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~g--~~~~~id~---i~------~g~~L~~L~e~T~~~~Yl~~a~~~a~ 109 (357)
T COG4225 41 FLYGVARAYEATGDAEYLDYLKTWFDEQIDEGG--LPPRNIDH---IA------AGLTLLPLYEQTGDPRYLEAAIKLAS 109 (357)
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHHHHhhhccCC--CCccchhh---hc------cCceeeehhhhhCCHHHHHHHHHHHH
Confidence 456899999999999999999998888754311 11111110 00 11478889999999999998887643
Q ss_pred ccccccccccCCCCCCCcccCCcce----------eee---hhhHHHhcCchHHHH-HHHHHHHHhh
Q 044240 320 PCFLGLLAVQSNDISDFHVNTHIPL----------VIG---TQRRYELTGELLHKE-MGTFFMDLVN 372 (859)
Q Consensus 320 ~~~~~~la~~~d~l~~~HanthiP~----------~~G---~a~~Y~~TGD~~y~~-aa~~fwd~V~ 372 (859)
.-.-.+ ..+. .+ ..|+.. .+| .++.-.++|+++|.+ +...|+..+.
T Consensus 110 ~l~~~~---Rt~e-G~---f~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~ 169 (357)
T COG4225 110 WLVHEP---RTKE-GG---FQHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEK 169 (357)
T ss_pred HHhhCc---ccCC-Cc---cccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 111010 0000 11 123332 244 556678999999965 5567777653
No 25
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=95.27 E-value=0.056 Score=63.27 Aligned_cols=192 Identities=17% Similarity=0.149 Sum_probs=111.8
Q ss_pred HHhHHHHHHHHh--CChhHHHHHHHHHHHHHHHhhhhhhccccc----------cccc--ccCCCCCchhHHHHHHHHhc
Q 044240 240 ILAGLLDQYKYA--DNAHALKMATRMVEYFYNRVQKVIRKYSVA----------RHWQ--YLNEEPGGMNDVLYRLFSIT 305 (859)
Q Consensus 240 I~aGLld~y~~t--G~~~aL~va~~~ad~~~~~~~~~~~~~~~~----------~~~~--~l~~E~GGmneaL~~LY~~T 305 (859)
++-|||.+|..+ +++..|+.|+.+||.+..-|.. ..+.+.. ++.. ..-.|.|.+..-+.+|.++|
T Consensus 82 ~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t-~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lT 160 (452)
T PF01532_consen 82 VLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDT-PTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLT 160 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSS-SSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccC-CCccccceeeecccCCCCCCCCcccccccccceechhHHHHHh
Confidence 678999999999 9999999999999998766632 1111110 1110 11135566778899999999
Q ss_pred CCHHHHHHHhhcccccccccccccCCCCCCCc-----ccCCcce----eee---------hhhHHHhcC--chHHHHHHH
Q 044240 306 KDPRHLFLAHLFAKPCFLGLLAVQSNDISDFH-----VNTHIPL----VIG---------TQRRYELTG--ELLHKEMGT 365 (859)
Q Consensus 306 Gd~ryL~LA~~f~~~~~~~~la~~~d~l~~~H-----anthiP~----~~G---------~a~~Y~~TG--D~~y~~aa~ 365 (859)
||++|.+.|++..+.- +.. ..+....+++ ..+..++ -+| ..+.|.++| |+.|++.-.
T Consensus 161 gd~kY~~~a~~~~~~l--~~~-~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~~~~~~ 237 (452)
T PF01532_consen 161 GDPKYFDAADRIYDAL--WRS-QNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQYRDMYD 237 (452)
T ss_dssp S-THHHHHHHHHHHHH--HCC-CCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH--HHh-hhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHHHHHHH
Confidence 9999999998874310 000 0001112211 1111111 123 556678899 888888887
Q ss_pred HHHHHhhccCeEeecCCCCCC--CCCCCCc--ccc-cCCcccccchhhHHHHHHHHHhhcccCCchHHHHHHHHHhhhh
Q 044240 366 FFMDLVNSSHTYATGGTSVGE--FWRDPKR--LAT-TLGTNNEESCTTYNMLKVSRNLFRWTKESAYADFYERALINGV 439 (859)
Q Consensus 366 ~fwd~V~~~h~y~TGG~g~~E--~f~~~~~--l~~-~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~ERalyN~v 439 (859)
...+.+.+ |+......-..+ .|-.... ... ..+....=+|-.-+|+.+..+++ ++.++.+..++......
T Consensus 238 ~a~~~i~~-~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~---~~~~~~~~A~~l~~~C~ 312 (452)
T PF01532_consen 238 EAVDAIKK-HLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLF---NDEGDLELAEELTETCY 312 (452)
T ss_dssp HHHHHHHH-HTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTT---TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhccc---CchhHHHHHHHHHHHHH
Confidence 77777764 433331111101 1111000 000 11355678999999999999988 44666666666655444
No 26
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=95.13 E-value=0.8 Score=57.51 Aligned_cols=224 Identities=17% Similarity=0.194 Sum_probs=125.3
Q ss_pred hhhHHHHHHHHHH----hcCChhHHHHHHHHHHHHHHHhhhC-----CCccccccCCchhhhccccCCCcccchhhhHHH
Q 044240 171 VGHYLSASALMWA----STHNDTLKEKMSAVVSALSHCQKKI-----GSGYLSAFPSRYFDHLEALKPVWAPYYTIHKIL 241 (859)
Q Consensus 171 ~Gh~LsA~a~~~a----~t~D~~L~~k~d~~Vd~l~~~Q~~~-----~dGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~ 241 (859)
+++=+.|++++++ .|+|+.+++.+.++++.+.+.-+.. +.|.+.+. ++ |.
T Consensus 489 LY~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~G~-------------------aG--i~ 547 (825)
T cd04792 489 LYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFSGL-------------------GG--IL 547 (825)
T ss_pred ccCChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEech-------------------hH--HH
Confidence 3666777776655 4788889988888888776653311 11111111 11 34
Q ss_pred hHHHHHHHHhCChhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCCCCchhHHHHHHHHhcCCHHHHHHHhhccccc
Q 044240 242 AGLLDQYKYADNAHALKMATRMVEYFYNRVQKVIRKYSVARHWQYLNEEPGGMNDVLYRLFSITKDPRHLFLAHLFAKPC 321 (859)
Q Consensus 242 aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~f~~~~ 321 (859)
..|+..|..+++++.++.+.+..+.+.+.... . .....++. ..|+..+|..||+.|++++++++|+...+.-
T Consensus 548 ~~L~~l~~~~~~~~~~~~a~~~~~~l~~~~~~------~-~~~D~~~G-~aGii~~Ll~l~~~~~~~~~l~~a~~~~~~l 619 (825)
T cd04792 548 YALTHLGKLLKDDRLLNLAKEILDLIDELIEK------D-EKLDFISG-AAGLILVLLSLYELFLSERFLDLALKCGDHL 619 (825)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc------c-cCCCEeee-cHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 45556788899999999999888877543211 0 00111222 2267789999999999999999987764321
Q ss_pred ccccccccCCCCCCCc------ccCCcc--eeeehhhHHHhcCchHHHHHHHHHHHHhhccCeEeecCCCCCCCCCCCCc
Q 044240 322 FLGLLAVQSNDISDFH------VNTHIP--LVIGTQRRYELTGELLHKEMGTFFMDLVNSSHTYATGGTSVGEFWRDPKR 393 (859)
Q Consensus 322 ~~~~la~~~d~l~~~H------anthiP--~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~y~TGG~g~~E~f~~~~~ 393 (859)
+ .. ....+.....+ .-.|.. ++.-.+.+|+.++|+.|+++++..++.... + +..++ ..|..+.
T Consensus 620 ~-~~-~~~~~~~~~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~-~-~~~~~----~~w~~~~- 690 (825)
T cd04792 620 L-EN-ASNEDGGIGPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERR-L-FSEEG----WNWPRKD- 690 (825)
T ss_pred H-Hh-hhhccCCcccccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-h-cCHhh----cCCCCcC-
Confidence 1 00 00011000000 011222 112255668999999999999988875432 2 21111 1121100
Q ss_pred ccccCCcccccch-hhHHHHHHHHHhhcc--cCCchHHHHHHHHHh
Q 044240 394 LATTLGTNNEESC-TTYNMLKVSRNLFRW--TKESAYADFYERALI 436 (859)
Q Consensus 394 l~~~l~~~~~ETC-as~nmlkl~~~Lf~~--tgd~~YaD~~ERaly 436 (859)
. .....--| .+.+.+.....+.+. ..|..+.+.+++++-
T Consensus 691 -~---~~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~ 732 (825)
T cd04792 691 -G---NSFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALK 732 (825)
T ss_pred -c---CCCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 0 01112233 344555555566777 578888888888763
No 27
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=94.96 E-value=0.44 Score=52.19 Aligned_cols=188 Identities=14% Similarity=-0.003 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCccccccCCchhhhccccCCCcccchhhhHHHhHHHHHHHHhCC
Q 044240 174 YLSASALMWASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPSRYFDHLEALKPVWAPYYTIHKILAGLLDQYKYADN 253 (859)
Q Consensus 174 ~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~y~~tG~ 253 (859)
.+-++..++..++|+...+.+..+++.|.+.+....+++-...... . ....-.|.-=..+ |...|+..+..+.+
T Consensus 104 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~--~~~~~g~~HG~~G--i~~~l~~~~~~~~~ 177 (343)
T cd04434 104 LLLALLLLYKTFGEEIFLELIRKILDYLLELGKNGDGKIRWPMYFP--E--GRVNLGLAHGLAG--ILLALLLLYKKTVD 177 (343)
T ss_pred HHHHHHHHHHhcCCcCHHHHHHHHHHHHHHhhhhccCCCceeeecc--C--CccccchhhhhHH--HHHHHHHHHHhcCC
Confidence 3444555566678899999999999999998874444432110000 0 0011122222222 66677788888888
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhccc----ccccccccCCCCC--chhHHHHHHHHhcCCHHHHHHHhhccccccccccc
Q 044240 254 AHALKMATRMVEYFYNRVQKVIRKYS----VARHWQYLNEEPG--GMNDVLYRLFSITKDPRHLFLAHLFAKPCFLGLLA 327 (859)
Q Consensus 254 ~~aL~va~~~ad~~~~~~~~~~~~~~----~~~~~~~l~~E~G--GmneaL~~LY~~TGd~ryL~LA~~f~~~~~~~~la 327 (859)
++..+++.....+..+.+.+.-..+. .........--+| |+..++.++|+.|+++++++.++...+..+-...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 256 (343)
T cd04434 178 KSLEALIKALLKYERRLQDDSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGL- 256 (343)
T ss_pred hhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhh-
Confidence 88888887777766543221000000 0000000011234 7889999999999999999998776432111100
Q ss_pred ccCCCCCCCcccCCcce--eeehhhHHHhcCchHHHHHHHHHHHHhh
Q 044240 328 VQSNDISDFHVNTHIPL--VIGTQRRYELTGELLHKEMGTFFMDLVN 372 (859)
Q Consensus 328 ~~~d~l~~~HanthiP~--~~G~a~~Y~~TGD~~y~~aa~~fwd~V~ 372 (859)
.+ ...+..-|... ......+|+.++|+.+++.++.+...+.
T Consensus 257 --~~--~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~~~~~ 299 (343)
T cd04434 257 --LE--LKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALALLLI 299 (343)
T ss_pred --cc--CCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 00 11122334443 2336677999999999999987777654
No 28
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=94.88 E-value=0.36 Score=50.16 Aligned_cols=148 Identities=18% Similarity=0.251 Sum_probs=92.9
Q ss_pred CCCcCCCCCccccchhhHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCccccccCC--chhhhccccCCCcccc
Q 044240 157 GGWEDPTSQLRGHFVGHYLSASALMWASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPS--RYFDHLEALKPVWAPY 234 (859)
Q Consensus 157 gGWe~~dsdl~GH~~Gh~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~--~~~~r~~~l~~~w~py 234 (859)
.||.+.=++ |+=||.++++|..|+|+...+.+++.++-+..--+ ..|-+..+.. ..++++......++
T Consensus 24 ~gW~SamaQ------G~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~~~--~GG~~~~~~~~~~wyeEYp~~p~s~V-- 93 (189)
T PF06662_consen 24 PGWYSAMAQ------GQAISVLARAYQLTGDEKYLDAAKKALNSFKVPVE--EGGVLATFKNKYPWYEEYPTTPPSYV-- 93 (189)
T ss_pred CCcHhHHHH------HHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcChHh--hCCeeEEecCCcEeEeecCCCCCCEE--
Confidence 478654333 89999999999999999999999999887765555 4555544332 12333321222222
Q ss_pred hhhhH-HHhHHHHHHHHhCChhHHHHHHHHHHHHHHHhhhhhhcccccccc-ccc-CCCC------------CchhHHHH
Q 044240 235 YTIHK-ILAGLLDQYKYADNAHALKMATRMVEYFYNRVQKVIRKYSVARHW-QYL-NEEP------------GGMNDVLY 299 (859)
Q Consensus 235 y~~Hk-I~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~-~~l-~~E~------------GGmneaL~ 299 (859)
.++|. -+.||-|.+..+++++|.++-.+-.+=+.+.+ +.+....|- +.+ |-.. .-...-|.
T Consensus 94 LNGfiysL~GLyd~~~~~~~~~A~~lf~~Gl~sLk~~L----p~yD~G~wS~Ydl~h~~~~~~~~~a~~~YH~lHi~qL~ 169 (189)
T PF06662_consen 94 LNGFIYSLIGLYDYYRLTGDEEAKELFDKGLKSLKKML----PLYDTGSWSRYDLRHFTLGNAPNIARWDYHRLHIQQLK 169 (189)
T ss_pred eehHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH----HhhhcCCCchhhccccccccCcCcCcchHHHHHHHHHH
Confidence 24444 35688899999999998887766665554433 222221110 111 1000 01125688
Q ss_pred HHHHhcCCHHHHHHHhhcc
Q 044240 300 RLFSITKDPRHLFLAHLFA 318 (859)
Q Consensus 300 ~LY~~TGd~ryL~LA~~f~ 318 (859)
+||.+|||+.+.+.|+++.
T Consensus 170 ~L~~it~d~~f~~~a~rW~ 188 (189)
T PF06662_consen 170 WLYSITGDPIFKEYAERWK 188 (189)
T ss_pred HHHHhcCCHHHHHHHHHhc
Confidence 8999999999999999864
No 29
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=93.84 E-value=1.1 Score=51.99 Aligned_cols=245 Identities=17% Similarity=0.094 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhCCCccccccC------Cchhhhcccc---CCC-----cccchhhhHHHhHHH-HHHHHhC
Q 044240 188 DTLKEKMSAVVSALSHCQKKIGSGYLSAFP------SRYFDHLEAL---KPV-----WAPYYTIHKILAGLL-DQYKYAD 252 (859)
Q Consensus 188 ~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~------~~~~~r~~~l---~~~-----w~pyy~~HkI~aGLl-d~y~~tG 252 (859)
+.+++.+..-+|.|.++|. ++|.+-.-. ...+.+.+.. +.. ..|--..=..+++.+ .+++.-.
T Consensus 94 ~dllde~kwg~D~llkm~~--~~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~k 171 (444)
T PF00759_consen 94 PDLLDEAKWGLDWLLKMQD--SDGTFYAQVGDGGVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVFK 171 (444)
T ss_dssp HHHHHHHHHHHHHHHHTBS--CTTEEEEEESTHHHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccC--CCCceeeeccCccchhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhcc
Confidence 6889999999999999999 644432211 0112221110 000 011111111223333 4445433
Q ss_pred C------hhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCCCC-chhHHHHHHHHhcCCHHHHHHHhhccccccccc
Q 044240 253 N------AHALKMATRMVEYFYNRVQKVIRKYSVARHWQYLNEEPG-GMNDVLYRLFSITKDPRHLFLAHLFAKPCFLGL 325 (859)
Q Consensus 253 ~------~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~G-GmneaL~~LY~~TGd~ryL~LA~~f~~~~~~~~ 325 (859)
+ ++.|+.|+++-+|..+.-...........-...-..... -+..+-+|||+.|||++|++.|+.+........
T Consensus 172 ~~d~~~A~~~L~~A~~~~~~a~~~~~~~~~~~~~~~~~~Y~~~~~~De~~wAA~~Ly~aTg~~~Y~~~a~~~~~~~~~~~ 251 (444)
T PF00759_consen 172 DFDPAYAAQCLKAAKEAYAFAKKNPGVYSDNPQPNGGGFYNSSGYEDELAWAAAELYRATGDESYLDYAKEYYDDLEASQ 251 (444)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHSTTHGGGTSTCTTTTTSHCS-SHHHHHHHHHHHHHHHT-HHHHHHHHHHCCTSSBST
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCcccCCCcccHHHHHHHHHHHhcCcHHHHHHHHHhHHhhcccc
Confidence 3 578889999988887543222111100000000000000 134678899999999999999988864311100
Q ss_pred ccccCCCCCCCcccCCcceeee-hhhHHHhc-C-------chHHHHHHHHHHHHhhcc----CeEeecCCCCCCCCCCCC
Q 044240 326 LAVQSNDISDFHVNTHIPLVIG-TQRRYELT-G-------ELLHKEMGTFFMDLVNSS----HTYATGGTSVGEFWRDPK 392 (859)
Q Consensus 326 la~~~d~l~~~HanthiP~~~G-~a~~Y~~T-G-------D~~y~~aa~~fwd~V~~~----h~y~TGG~g~~E~f~~~~ 392 (859)
. .+. ..+ .--.+..+ ...++..+ . .+.+++.++.+.+..... -.+..||....-.|
T Consensus 252 ~---~~~--~~~--~W~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~W---- 320 (444)
T PF00759_consen 252 W---SNE--WSF--SWDNKAAGAQLLLAKLTNDDPSRDAAREQYKSAADKFLNKWLNDGYGSVPYTPGGLAWIYEW---- 320 (444)
T ss_dssp T---SSS--SSS--CTTBSHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHSTTTBSEBCTTSSBESEST----
T ss_pred c---ccc--ccc--chhhhhhhhhHHHHhcccchhhhHHHHHHHHHHHHHHHHHHhhccCCCcccCccccccccCC----
Confidence 0 000 000 00111122 22233333 1 356777777777777653 01111111111111
Q ss_pred cccccCCcccccchhhHHHHHHHHHhhcccCCchHHHHHHHHHhhhhhcccCCCCCCcEEEecCCC
Q 044240 393 RLATTLGTNNEESCTTYNMLKVSRNLFRWTKESAYADFYERALINGVLSIQRGTSPGVMIYMLPLG 458 (859)
Q Consensus 393 ~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~ERalyN~vLa~q~~~~~g~~~Y~~PL~ 458 (859)
....-.|+... |.+.-.-+..+++.+|.++.++.+ |=|||. +| ....|+.-++
T Consensus 321 -------Gs~~~~~~~a~-l~~~~~~~~~~~~~~y~~~a~~ql-dyiLG~-Np---~~~SyV~G~G 373 (444)
T PF00759_consen 321 -------GSNRYAANAAF-LALAYAKYDLTGDQEYRDFAQSQL-DYILGR-NP---FGQSYVTGYG 373 (444)
T ss_dssp -------THHHHHHHHHH-HHHHHHHTCHCHHHHHHHHHHHHH-HHHHTT-ST---T--BSBTTSS
T ss_pred -------CccHHHHHHHH-HHHHHHhcccCChHHHHHHHHHHh-hhhcCc-CC---CCceeeecCC
Confidence 11111222222 222111125899999999999877 788886 33 2345665554
No 30
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=93.54 E-value=1.6 Score=49.68 Aligned_cols=194 Identities=13% Similarity=-0.062 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHhc--CChhHHHHHHHHHHHHHHHhhhCCCccccccCCchhhhcccc-CC------CcccchhhhHHHhH
Q 044240 173 HYLSASALMWAST--HNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPSRYFDHLEAL-KP------VWAPYYTIHKILAG 243 (859)
Q Consensus 173 h~LsA~a~~~a~t--~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~~~r~~~l-~~------~w~pyy~~HkI~aG 243 (859)
|=+++++..+-.. .+.+....+..+++.+.+.+....++|+..... +...+.. .. .|+.=.++ |+..
T Consensus 105 ~G~aGi~~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~G~aHG~aG--i~~~ 180 (382)
T cd04793 105 SGLSGIGRYLLLRHEPDSELLREILDYLVYLTEPLNQDITLYIWSENQ--PSETESKEFPEGHINLGLAHGIAG--PLAL 180 (382)
T ss_pred echHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhcCCCCccCcCcC--CCccccccCCCccccccchhcchH--HHHH
Confidence 4455555444333 467777778888888877654223333322111 1111100 00 11111122 5556
Q ss_pred HHHHHHHh-CChhHHHHHHHHHHHHHHHhhhhhh-cccccc------------cc--cccCCCCC--chhHHHHHHHHhc
Q 044240 244 LLDQYKYA-DNAHALKMATRMVEYFYNRVQKVIR-KYSVAR------------HW--QYLNEEPG--GMNDVLYRLFSIT 305 (859)
Q Consensus 244 Lld~y~~t-G~~~aL~va~~~ad~~~~~~~~~~~-~~~~~~------------~~--~~l~~E~G--GmneaL~~LY~~T 305 (859)
|...|+.+ ++++.++++.+..+|+.+.+...-. .+...+ .. ....--+| |+..++..+++.+
T Consensus 181 L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~ 260 (382)
T cd04793 181 LALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIARALQLAGKAL 260 (382)
T ss_pred HHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHHHHHHHHHHh
Confidence 65667777 8899999999999988754421100 000000 00 00001134 7889999999999
Q ss_pred CCHHHHHHHhhcccccccccccccCCCCCCCcccCCcce--eeehhhHHHhcCchHHHHHHHHHHHHhhc
Q 044240 306 KDPRHLFLAHLFAKPCFLGLLAVQSNDISDFHVNTHIPL--VIGTQRRYELTGELLHKEMGTFFMDLVNS 373 (859)
Q Consensus 306 Gd~ryL~LA~~f~~~~~~~~la~~~d~l~~~HanthiP~--~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~ 373 (859)
+|+++++.|....+....... ..... ..+...|... .......|+.|+|+.++++++++.+.+.+
T Consensus 261 ~~~~~~~~a~~~~~~~~~~~~--~~~~~-~~~~lChG~~G~~~~l~~~~~~~~~~~~~~~a~~~~~~~l~ 327 (382)
T cd04793 261 DDQKLQEAAEKILKAALKDKK--QLSKL-ISPTLCHGLAGLLFIFYLLYKDTNTNEFKSALEYLLNQIIS 327 (382)
T ss_pred CCHHHHHHHHHHHHHHHhChh--hhccC-CCCCcCccHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 999999998877543221100 00000 1112233331 23356779999999999999999888764
No 31
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=93.30 E-value=0.43 Score=55.94 Aligned_cols=265 Identities=9% Similarity=0.033 Sum_probs=135.0
Q ss_pred chhhHHHHHHHHHHhc--CChhHHHHHHHHHHHHHHHhhhCCCccccccCCchhhhccccCCCcccc-hhhhHH---HhH
Q 044240 170 FVGHYLSASALMWAST--HNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPSRYFDHLEALKPVWAPY-YTIHKI---LAG 243 (859)
Q Consensus 170 ~~Gh~LsA~a~~~a~t--~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~~~r~~~l~~~w~py-y~~HkI---~aG 243 (859)
++-.+|.++--+|..+ +|+.|.+|+.++.|.|..+-+ .++|.--+. ..+. ......|.+. -+++-+ ..-
T Consensus 78 t~iR~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~-t~~g~P~~~--~n~~--~~~~~~~~~~~~~la~~gs~~lE 152 (452)
T PF01532_consen 78 TTIRVLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFD-TPTGIPYPR--VNLR--TGGKNRWPGGESSLAEAGSLQLE 152 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGS-SSSS---SE--EETT--TCEEETTCCGEEEHHHHCSSHHH
T ss_pred hhhHhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhcc-CCCccccce--eeec--ccCCCCCCCCcccccccccceec
Confidence 4678999998888888 999999999999999988774 255542221 1010 0001111111 011111 111
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHHHhhh-hhhccc---cc---ccccccCCCCCchh----HHHHHHHHhcC--CHHH
Q 044240 244 LLDQYKYADNAHALKMATRMVEYFYNRVQK-VIRKYS---VA---RHWQYLNEEPGGMN----DVLYRLFSITK--DPRH 310 (859)
Q Consensus 244 Lld~y~~tG~~~aL~va~~~ad~~~~~~~~-~~~~~~---~~---~~~~~l~~E~GGmn----eaL~~LY~~TG--d~ry 310 (859)
...-.+.||+++..+.+.+..+.+.+...+ .++++- +. ..|....-..||+. |-|.+.|-++| |+.|
T Consensus 153 f~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~ 232 (452)
T PF01532_consen 153 FTRLSQLTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQY 232 (452)
T ss_dssp HHHHHHHHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHH
T ss_pred hhHHHHHhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHH
Confidence 223467899999999999999999762110 011111 00 01111112345554 67888999999 8888
Q ss_pred HHHHhhccc---cc-cccccccc---------C---CCCCCCcccCCcceeee-hhhH-HHhcCchHHHHHHHHHHHHh-
Q 044240 311 LFLAHLFAK---PC-FLGLLAVQ---------S---NDISDFHVNTHIPLVIG-TQRR-YELTGELLHKEMGTFFMDLV- 371 (859)
Q Consensus 311 L~LA~~f~~---~~-~~~~la~~---------~---d~l~~~HanthiP~~~G-~a~~-Y~~TGD~~y~~aa~~fwd~V- 371 (859)
+++=+...+ .. ...+.... . ....-.+..+|.-++.| ...+ ...-+++.+++.|+...+.-
T Consensus 233 ~~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~~~~~~~~~A~~l~~~C~ 312 (452)
T PF01532_consen 233 RDMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLFNDEGDLELAEELTETCY 312 (452)
T ss_dssp HHHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhcccCchhHHHHHHHHHHHHH
Confidence 875433221 11 11100000 0 00111223345555544 2222 34447788888887766653
Q ss_pred hccCeEeecCCCCCCCCCCCC-cc---------cccCCcccccchhhHHHHHHHHHhhcccCCchHHHHHHHHHhhhhhc
Q 044240 372 NSSHTYATGGTSVGEFWRDPK-RL---------ATTLGTNNEESCTTYNMLKVSRNLFRWTKESAYADFYERALINGVLS 441 (859)
Q Consensus 372 ~~~h~y~TGG~g~~E~f~~~~-~l---------~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~ERalyN~vLa 441 (859)
.-++.++||. +. |.|.-.. .- ...+........-.-+.+.+.-+|+++|||++|-|+-..++ +++-.
T Consensus 313 ~~y~~~~tGl-~P-E~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~LRPE~iES~fylyR~TgD~~yre~gw~if-~ai~k 389 (452)
T PF01532_consen 313 WLYKSTPTGL-GP-EIFSFDPCEENCQWDEERKDFMIKISDPRYLLRPETIESLFYLYRATGDPKYREWGWDIF-QAIEK 389 (452)
T ss_dssp HHHHTSSSSS----SEEEESCSCG--TEETGGCSCCHHGGG--B-S--HHHHHHHHHHHHH-BHHHHHHHHHHH-HHHHH
T ss_pred HHHHhcccCC-Cc-eEEEeeccccccccchhhcccccccccccccchhhhhhheeEEEEEcCCchHHHHHHHHH-HHHHH
Confidence 2244555664 32 4432111 00 00000011222333478889999999999999999887754 55544
Q ss_pred c
Q 044240 442 I 442 (859)
Q Consensus 442 ~ 442 (859)
.
T Consensus 390 ~ 390 (452)
T PF01532_consen 390 Y 390 (452)
T ss_dssp H
T ss_pred h
Confidence 3
No 32
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=93.16 E-value=1 Score=53.73 Aligned_cols=199 Identities=20% Similarity=0.214 Sum_probs=105.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCC-CccccccCCchhhhccc----cCCCcccchhhhHHHhHHHHHHHHh
Q 044240 177 ASALMWASTHNDTLKEKMSAVVSALSHCQKKIG-SGYLSAFPSRYFDHLEA----LKPVWAPYYTIHKILAGLLDQYKYA 251 (859)
Q Consensus 177 A~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~-dGYL~a~~~~~~~r~~~----l~~~w~pyy~~HkI~aGLld~y~~t 251 (859)
-..++...|+|+.+.++++++.+.|.+.+. . +|-++.+-...-..|.. +...=-.|| .-|+-+|..+
T Consensus 230 EF~~LS~lTGd~kY~~~a~~i~~~l~~~~~--~~~GL~p~~i~~~~g~~~~~~~siGa~~DS~Y------EYLlK~~il~ 301 (522)
T PTZ00470 230 EFNYLSEITGDPKYAEYVDKVMDALFSMKP--AINGLYPIFLNPDAGRFCGNHISLGALGDSYY------EYLLKQWLYT 301 (522)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHhcCC--CCCCccceEECCccCccCCCceeecCCcchhH------HHHHHHHHhc
Confidence 345556789999999999999999987655 3 56555432111111111 011111344 4566788888
Q ss_pred C--ChhHHHHHHHHHHHHHHHhhhhh-hcc------cccc--c-ccccCCCCCchhHHHHHHHH----hcCCHHHHHHHh
Q 044240 252 D--NAHALKMATRMVEYFYNRVQKVI-RKY------SVAR--H-WQYLNEEPGGMNDVLYRLFS----ITKDPRHLFLAH 315 (859)
Q Consensus 252 G--~~~aL~va~~~ad~~~~~~~~~~-~~~------~~~~--~-~~~l~~E~GGmneaL~~LY~----~TGd~ryL~LA~ 315 (859)
| +++.+++-....+-+.+.+.... .+. .... + ..-+.|-.|||- +|.-..+ ...+++|+++|+
T Consensus 302 ~~~d~~~~~~~~~a~~~i~~~l~~~s~~~~~~v~~~~~~~~~~~~~hL~cF~gG~~-aLg~~~~~~~~~~~~~~~~~~a~ 380 (522)
T PTZ00470 302 NGREERYRRLFVESAKGIIEHLYKRSPKGLTYIAEMDGGSLTNKMEHLACFAGGMF-ALGAAINITPDDEKSARYMEVGE 380 (522)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhcccCCCCcEEEeeccCCcCcchhhhhhhhccchh-hhcccccccccccccHHHHHHHH
Confidence 5 55566666665555544321110 000 0000 0 012335556653 2211011 123578999998
Q ss_pred hcccccc---------cccccccCC----CCCCCcccCCc---c-eeeehhhHHHhcCchHHHHHHHHHHHHhhccCeEe
Q 044240 316 LFAKPCF---------LGLLAVQSN----DISDFHVNTHI---P-LVIGTQRRYELTGELLHKEMGTFFMDLVNSSHTYA 378 (859)
Q Consensus 316 ~f~~~~~---------~~~la~~~d----~l~~~Hanthi---P-~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~y~ 378 (859)
.+.+.|+ +.|....-+ ...-.....+- | .++..-.+|++|||+.|++.+-..|+.+.+ +.-+
T Consensus 381 ~l~~tC~~~Y~~~~tGl~PE~~~~~~~~~~~~~~~~d~~Y~LRPE~iES~fylyR~TgD~~yre~gW~~f~ai~k-~~rt 459 (522)
T PTZ00470 381 EVTKTCYETYATSPTGLGPEIFHFDPNSGDISPNVHDSHYILRPETVESIFILYRLTGDPKYREWAWKIFQAIEK-HCKT 459 (522)
T ss_pred HHHHHHHHHHHhcccCCCCceEEeccCccccccccCCCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HhcC
Confidence 8754432 222221100 00000001121 2 246677789999999999999999999874 5556
Q ss_pred ecCCCCC
Q 044240 379 TGGTSVG 385 (859)
Q Consensus 379 TGG~g~~ 385 (859)
.+|.++-
T Consensus 460 ~~Gya~i 466 (522)
T PTZ00470 460 ENGYSGL 466 (522)
T ss_pred Ccccccc
Confidence 6676653
No 33
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=92.79 E-value=14 Score=42.33 Aligned_cols=279 Identities=14% Similarity=0.089 Sum_probs=151.1
Q ss_pred hHHHHHhcCCCCCCCCCCCCcCCC------CCccccchhhHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhC-CCcc
Q 044240 140 VWSFRKTAGLRTKGNAYGGWEDPT------SQLRGHFVGHYLSASALMWASTHNDTLKEKMSAVVSALSHCQKKI-GSGY 212 (859)
Q Consensus 140 L~nFr~~AGl~~~g~~~gGWe~~d------sdl~GH~~Gh~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~-~dGY 212 (859)
+-+|..++|+++.|..+=.|-..+ .+-+.+....-+=..|.++.....+..++.++.=|+.+.+.=..- +.||
T Consensus 20 ~lp~w~~~g~d~~~GGffe~l~~dG~~~~~~~rr~~~~~Rqvy~fA~A~~~g~~~~~~~~v~hG~~y~~~~~R~~~gg~~ 99 (388)
T COG2942 20 ALPFWLNAGVDTEGGGFFEALDRDGQILDETDRRLRVQARQVYCFAVAGLLGWRGPWLDAVAHGIAYLARVGRDPEGGWY 99 (388)
T ss_pred hhhhhcccCcCCCCCCceeeeccCCccccCCCceeeeehhHHHHHHHHHHhcCCccHHHHHHhHHHHHHhcCcCCCCCeE
Confidence 667999999987653221222222 222333444444455555555557778888888888887553211 4444
Q ss_pred ccccCCchhhhccccCCCcccchhhhHHHhHHHHHHHHhCChhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCCCC
Q 044240 213 LSAFPSRYFDHLEALKPVWAPYYTIHKILAGLLDQYKYADNAHALKMATRMVEYFYNRVQKVIRKYSVARHWQYLNEEPG 292 (859)
Q Consensus 213 L~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~G 292 (859)
.-.-... .-.....+ .|+-=-++.++ +++..+|+++|.++....-+.+.+++-+.-..+.....-.......|
T Consensus 100 ~~~~~dg--~~~Dat~d----~Y~haFallA~-A~~a~a~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~pl~ 172 (388)
T COG2942 100 FALDNDG--GPVDATKD----LYGHAFALLAA-AHAATAGPPRADELLDEALDVLERRFWREEHPLGGFEEDNPGSAPLG 172 (388)
T ss_pred EEecCCC--CcccccHh----HHHHHHHHHHH-HHHHhcCChhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCccC
Confidence 3322110 00000112 22222244555 77889999999999999888888777542111111111111111112
Q ss_pred c-----hhHHHHHHHHhcCCHHHHHHHhhccc---ccccccccccCCCCCCCcc-c--CCcceee------e--------
Q 044240 293 G-----MNDVLYRLFSITKDPRHLFLAHLFAK---PCFLGLLAVQSNDISDFHV-N--THIPLVI------G-------- 347 (859)
Q Consensus 293 G-----mneaL~~LY~~TGd~ryL~LA~~f~~---~~~~~~la~~~d~l~~~Ha-n--thiP~~~------G-------- 347 (859)
. |.|+|.--|+.||+++|++.|..+.+ ..|++.. +..-..|. . ...+... |
T Consensus 173 sNp~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~----~g~v~E~fd~dW~p~~~frg~~~ePGH~fEW~~L 248 (388)
T COG2942 173 SNPHMHLLEAMLAAYEATGEKTWLDRADRIADLIISRFADAE----SGLVREHFDHDWNPAHGFRGRGIEPGHQFEWAWL 248 (388)
T ss_pred CCcchHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcc----cCcHhhhccccCCcCCCcccCCCCCchHHHHHHH
Confidence 1 23788888999999999998877643 2333321 11111110 1 1122221 2
Q ss_pred hhhHHHhcCchHHHHHHHHHHHHhhccCe-EeecCCCCCCCCCCCCcccccCCcccccchhhHHHHHHHHHhhcccC-Cc
Q 044240 348 TQRRYELTGELLHKEMGTFFMDLVNSSHT-YATGGTSVGEFWRDPKRLATTLGTNNEESCTTYNMLKVSRNLFRWTK-ES 425 (859)
Q Consensus 348 ~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~-y~TGG~g~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tg-d~ 425 (859)
.....+..++......|+..+++...+-. -.+||.--. +..+...- ....=.=...+.|+-+-.|...+| +.
T Consensus 249 ll~~a~~~~~~~l~~~A~~lf~~a~~~g~d~~~gg~~~s--l~~D~~~~----d~~~r~WpQ~E~l~AA~ala~~~~~~~ 322 (388)
T COG2942 249 LLDIARRRGRAWLIEAARRLFDIAVADGWDPERGGAYYS--LDDDGSPH----DRQQRLWPQTEALKAAVALAETTGARE 322 (388)
T ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHhccCcccCeEEEE--ecCCCCcC----CHHHhhChHHHHHHHHHHHHhcCCchH
Confidence 34456788888889999998888764222 133333210 00111000 111112223345999999999999 99
Q ss_pred hHHHHHHHHH
Q 044240 426 AYADFYERAL 435 (859)
Q Consensus 426 ~YaD~~ERal 435 (859)
+|-+.+.|+.
T Consensus 323 ~y~~~~~R~~ 332 (388)
T COG2942 323 RYWQWYARAW 332 (388)
T ss_pred HHHHHHHHHH
Confidence 9999999976
No 34
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=92.63 E-value=0.22 Score=51.67 Aligned_cols=131 Identities=20% Similarity=0.144 Sum_probs=74.4
Q ss_pred HHHHHHHHhcCCHHHHHHHhhccccccccccccc------CC--CCCCCcc--------cCCcceeeehhhHHHhcCchH
Q 044240 296 DVLYRLFSITKDPRHLFLAHLFAKPCFLGLLAVQ------SN--DISDFHV--------NTHIPLVIGTQRRYELTGELL 359 (859)
Q Consensus 296 eaL~~LY~~TGd~ryL~LA~~f~~~~~~~~la~~------~d--~l~~~Ha--------nthiP~~~G~a~~Y~~TGD~~ 359 (859)
-+|+|.|++|||++||+.|++..+.-. -+...+ .+ ..-..+. |.||=.++|.-..+..++++.
T Consensus 37 s~l~RAy~~t~d~~Yl~aA~~al~~f~-~~~~~GG~~~~~~~~~~wyeEYp~~p~s~VLNGfiysL~GLyd~~~~~~~~~ 115 (189)
T PF06662_consen 37 SVLARAYQLTGDEKYLDAAKKALNSFK-VPVEEGGVLATFKNKYPWYEEYPTTPPSYVLNGFIYSLIGLYDYYRLTGDEE 115 (189)
T ss_pred HHHHHHHHhHCCHHHHHHHHHHHHHhc-ChHhhCCeeEEecCCcEeEeecCCCCCCEEeehHHHHHHHHHHHHHhcCCHH
Confidence 689999999999999999998643211 111000 01 0000111 222223356667788899988
Q ss_pred HHHHHHHHHHHhhcc-CeEeecCCCCCC--CCCCCCcccccCCcccccchhhHHHHHHHHHhhcccCCchHHHHHHH
Q 044240 360 HKEMGTFFMDLVNSS-HTYATGGTSVGE--FWRDPKRLATTLGTNNEESCTTYNMLKVSRNLFRWTKESAYADFYER 433 (859)
Q Consensus 360 y~~aa~~fwd~V~~~-h~y~TGG~g~~E--~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~ER 433 (859)
.++.-+...+.+.+. ..|-+|+.+.-. |+.. ...++.-...|. .. .+.....|..+|+|+.+.+++||
T Consensus 116 A~~lf~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~-~~~~~~a~~~YH--~l---Hi~qL~~L~~it~d~~f~~~a~r 186 (189)
T PF06662_consen 116 AKELFDKGLKSLKKMLPLYDTGSWSRYDLRHFTL-GNAPNIARWDYH--RL---HIQQLKWLYSITGDPIFKEYAER 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCchhhcccccc-ccCcCcCcchHH--HH---HHHHHHHHHHhcCCHHHHHHHHH
Confidence 777766666665422 247777766421 2221 111110001111 11 34556778999999999999997
No 35
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=92.60 E-value=0.44 Score=53.21 Aligned_cols=141 Identities=17% Similarity=0.063 Sum_probs=77.5
Q ss_pred CCCchhHHHHHHHHhcCCHHHHHHHhhcccccccccccccCCCCCCCcccCCcceeee--hhhHHHhcCchHHHHHHHHH
Q 044240 290 EPGGMNDVLYRLFSITKDPRHLFLAHLFAKPCFLGLLAVQSNDISDFHVNTHIPLVIG--TQRRYELTGELLHKEMGTFF 367 (859)
Q Consensus 290 E~GGmneaL~~LY~~TGd~ryL~LA~~f~~~~~~~~la~~~d~l~~~HanthiP~~~G--~a~~Y~~TGD~~y~~aa~~f 367 (859)
|.|=.--.++++|+.|||++||+..+...+..+... .++. ..-.|| ..| ..-+|+.|||++|++++..+
T Consensus 37 e~GV~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~------g~~~-~~id~i--~~g~~L~~L~e~T~~~~Yl~~a~~~ 107 (357)
T COG4225 37 EQGVFLYGVARAYEATGDAEYLDYLKTWFDEQIDEG------GLPP-RNIDHI--AAGLTLLPLYEQTGDPRYLEAAIKL 107 (357)
T ss_pred cccchHHHHHHHHHHcCcHHHHHHHHHHHHhhhccC------CCCc-cchhhh--ccCceeeehhhhhCCHHHHHHHHHH
Confidence 455334679999999999999998776644333221 0110 001122 223 44679999999999999999
Q ss_pred HHHhhccCeEeecCCCCCCCCCCCCcccccCCcccccchhhHHH-HHHHHHhhcccCCchHHHHHHHHHhhhhhcccCCC
Q 044240 368 MDLVNSSHTYATGGTSVGEFWRDPKRLATTLGTNNEESCTTYNM-LKVSRNLFRWTKESAYADFYERALINGVLSIQRGT 446 (859)
Q Consensus 368 wd~V~~~h~y~TGG~g~~E~f~~~~~l~~~l~~~~~ETCas~nm-lkl~~~Lf~~tgd~~YaD~~ERalyN~vLa~q~~~ 446 (859)
=+.+++.--+--||. |+... .+ ..==|.+--| .-+.-++=+.+++++|.|.+=+..-=+.---++|
T Consensus 108 a~~l~~~~Rt~eG~f-----~H~~~-~p------~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~Dp- 174 (357)
T COG4225 108 ASWLVHEPRTKEGGF-----QHKVK-YP------HQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEKYLRDP- 174 (357)
T ss_pred HHHHhhCcccCCCcc-----ccccC-ch------hHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHccCC-
Confidence 888874221222322 22111 01 1111111111 0122234567899999998877665444444554
Q ss_pred CCCcEEE
Q 044240 447 SPGVMIY 453 (859)
Q Consensus 447 ~~g~~~Y 453 (859)
++| .+|
T Consensus 175 ~TG-L~Y 180 (357)
T COG4225 175 ETG-LYY 180 (357)
T ss_pred CcC-ceE
Confidence 444 344
No 36
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=92.08 E-value=2.2 Score=48.65 Aligned_cols=195 Identities=15% Similarity=0.061 Sum_probs=107.9
Q ss_pred CccccchhhHHHHHHHHHHhcCCh---hHHHHHHHHHHHHHHHhhhCCCccccccCCchhhhccccCCCcccchhhhHHH
Q 044240 165 QLRGHFVGHYLSASALMWASTHND---TLKEKMSAVVSALSHCQKKIGSGYLSAFPSRYFDHLEALKPVWAPYYTIHKIL 241 (859)
Q Consensus 165 dl~GH~~Gh~LsA~a~~~a~t~D~---~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~ 241 (859)
|+.+|.+- |=|+|. ++..+++ ++++.+..+++.+..-++.---||.-..|-. .-. ...-..|+++
T Consensus 114 d~Y~haFa--llA~A~-~a~a~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~---~pl------~sNp~MHl~E 181 (388)
T COG2942 114 DLYGHAFA--LLAAAH-AATAGPPRADELLDEALDVLERRFWREEHPLGGFEEDNPGS---APL------GSNPHMHLLE 181 (388)
T ss_pred hHHHHHHH--HHHHHH-HHhcCChhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCC---Ccc------CCCcchHHHH
Confidence 56555432 444444 3345555 4555555566655555552122333333211 100 1122567665
Q ss_pred hHHHHHHHHhCChhHHHHHHHHHHHHHHHhhhhhh----cccccccccccCCCCC-c------hh--HHHHHHHHhcCCH
Q 044240 242 AGLLDQYKYADNAHALKMATRMVEYFYNRVQKVIR----KYSVARHWQYLNEEPG-G------MN--DVLYRLFSITKDP 308 (859)
Q Consensus 242 aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~----~~~~~~~~~~l~~E~G-G------mn--eaL~~LY~~TGd~ 308 (859)
++|+.|+.+|....++.|.+.|+-++.+|-.... +..+.+ |.+-+.+.| | ++ --|.++-+.-|+.
T Consensus 182 -A~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~d-W~p~~~frg~~~ePGH~fEW~~Lll~~a~~~~~~ 259 (388)
T COG2942 182 -AMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHD-WNPAHGFRGRGIEPGHQFEWAWLLLDIARRRGRA 259 (388)
T ss_pred -HHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhcccc-CCcCCCcccCCCCCchHHHHHHHHHHHHHHhchh
Confidence 6669999999999999999999999988754221 122222 334444443 2 23 4667788888999
Q ss_pred HHHHHHhhcccccccccccccCCCCC---CCcccCCcce--------eee-hhhHHHhcC-chHHHHHHHHHHHHhhc
Q 044240 309 RHLFLAHLFAKPCFLGLLAVQSNDIS---DFHVNTHIPL--------VIG-TQRRYELTG-ELLHKEMGTFFMDLVNS 373 (859)
Q Consensus 309 ryL~LA~~f~~~~~~~~la~~~d~l~---~~HanthiP~--------~~G-~a~~Y~~TG-D~~y~~aa~~fwd~V~~ 373 (859)
+.++.|+++.+...-.-.......+- ..-.+.|-+. .++ +..++..|| ++.|.+...++|+-...
T Consensus 260 ~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~~~r~WpQ~E~l~AA~ala~~~~~~~~y~~~~~R~~~~~~~ 337 (388)
T COG2942 260 WLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDRQQRLWPQTEALKAAVALAETTGARERYWQWYARAWDYLWW 337 (388)
T ss_pred HHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCHHHhhChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 99999988865322111000000000 0001223331 134 445588899 89999999998888764
No 37
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=91.91 E-value=2.5 Score=47.48 Aligned_cols=134 Identities=16% Similarity=0.090 Sum_probs=84.1
Q ss_pred hhhHHHHHHHH----HHhcCChhHHHHHHHHHHHHHHHhhhCCCccccccCCchhhhccccCCCcccchhhhHHHhHHHH
Q 044240 171 VGHYLSASALM----WASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPSRYFDHLEALKPVWAPYYTIHKILAGLLD 246 (859)
Q Consensus 171 ~Gh~LsA~a~~----~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld 246 (859)
+.|=..+.+++ +..++|+++++.+...++.+.+.+. ++|.+....... ..-......|.. .+ |...++.
T Consensus 163 ~aHG~aGI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~--~~g~w~~~~~~~-~~~~~~~wChG~--~G--i~~~l~~ 235 (343)
T cd04794 163 AAHGLAGILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQF--PSGNFPSSLGNR-KRDRLVQWCHGA--PG--IVYLLAK 235 (343)
T ss_pred hhhhHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhc--cCCCCCCccCCC-CCCccccccCCC--ch--HHHHHHH
Confidence 34555555544 4457889999999999999998877 667532211100 000001122221 22 5567778
Q ss_pred HHHHhCChhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCCCCchhHHHHHHHHhcCCHHHHHHHhhccc
Q 044240 247 QYKYADNAHALKMATRMVEYFYNRVQKVIRKYSVARHWQYLNEEPGGMNDVLYRLFSITKDPRHLFLAHLFAK 319 (859)
Q Consensus 247 ~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~f~~ 319 (859)
+++.+++++.++.+.+.++.+.++ .. ......- -|... |.-++|.++|+.|++++|++.|..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~--g~----~~~~~~l-CHG~~-G~~~~lL~~~~~~~~~~~~~~a~~~~~ 300 (343)
T cd04794 236 AYLVFKEEQYLEAAIKCGELIWKR--GL----LKKGPGL-CHGIA-GNAYAFLLLYRLTGDLKYLYRACKFAE 300 (343)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHh--CC----ccCCCcc-ccCcc-chHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 899999999999999888876532 11 0000111 12222 577899999999999999999988754
No 38
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=91.12 E-value=6.9 Score=46.27 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=71.7
Q ss_pred ccchhhhHHHHHhcCCCCCCCCCCCCcCCCCCccccchhhHH-------HHHHHHHHhcCChhHHHHHHHHHHHHHHHhh
Q 044240 134 LDVDRLVWSFRKTAGLRTKGNAYGGWEDPTSQLRGHFVGHYL-------SASALMWASTHNDTLKEKMSAVVSALSHCQK 206 (859)
Q Consensus 134 ~d~drLL~nFr~~AGl~~~g~~~gGWe~~dsdl~GH~~Gh~L-------sA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~ 206 (859)
+.+.++.+-|...-|+...|. ..+.+|-.||+.||=+ |+.|-- -...-+++++.+++--+.|-.+..
T Consensus 418 i~p~~~fdl~a~hygvk~sGn-----vs~ssDPhgel~gkNVL~vr~s~e~taan-f~lsve~~kkll~e~~e~L~~aR~ 491 (786)
T KOG2244|consen 418 IGPASLFDLFAEHYGVKKSGN-----VSSSSDPHGELAGKNVLIVRNSTEATAAN-FSLSVEKYKKLLGECREKLFDARL 491 (786)
T ss_pred CCcchHHHHHHHHcCCCCCCC-----CCCCCCCcccccCceEEEEecchHhhHhh-ccccHHHHHHHHHHHHHHHHHHhh
Confidence 346677777888888876552 3445677888888742 333221 123446677777777666666655
Q ss_pred hCCCccccccCCchhhhccccCCCcccchhhhHHHhHHHHHHHHhCCh-hHHHHHHHHHHHHHHHhhhh
Q 044240 207 KIGSGYLSAFPSRYFDHLEALKPVWAPYYTIHKILAGLLDQYKYADNA-HALKMATRMVEYFYNRVQKV 274 (859)
Q Consensus 207 ~~~dGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~y~~tG~~-~aL~va~~~ad~~~~~~~~~ 274 (859)
+.+.=-|.. + +--.|.- +++.|+.-++...+-+ +.++-+...++++-+.+-++
T Consensus 492 kRPkPHLDs---K-------ii~sWnG-----LviSgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~d~ 545 (786)
T KOG2244|consen 492 KRPKPHLDS---K-------IIVSWNG-----LVISGLAKAGKILKAEPEYTKYAFPVANFLPKDMIDV 545 (786)
T ss_pred cCCCCCccc---h-------heeeccc-----hhhHHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhch
Confidence 332211111 1 1112221 2667888788877665 89999999999987655443
No 39
>PLN02345 endoglucanase
Probab=90.22 E-value=29 Score=41.19 Aligned_cols=123 Identities=12% Similarity=0.089 Sum_probs=63.9
Q ss_pred ChhHHHHHHHHHHHHHHHhhhCCCccccccC-Cc-----hhhhccccCCCcccchh----------hhHHHhHHHHHHHH
Q 044240 187 NDTLKEKMSAVVSALSHCQKKIGSGYLSAFP-SR-----YFDHLEALKPVWAPYYT----------IHKILAGLLDQYKY 250 (859)
Q Consensus 187 D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~-~~-----~~~r~~~l~~~w~pyy~----------~HkI~aGLld~y~~ 250 (859)
-+.+++.++.-.|.|++||. .||-+-.-- .. .+.+-|+.. ..-|.|. .-.+-++|-.++..
T Consensus 81 ~~~~ldelkw~~Dyllk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~-~~R~~~~~~~~~pgsd~a~~~AAAlA~as~v 157 (469)
T PLN02345 81 LDSAKDSLKWITDYLINAHP--SENVLYIQVGDPKLDHKCWERPETMD-EKRPLTKINTSSPGSEVAAETAAAMAAASLV 157 (469)
T ss_pred hHHHHHHHhHHHHHHHHhcC--CCCeEEEEecCCCCCcccCCChhhcC-CcceEEecCCCCCCcHHHHHHHHHHHHHHHH
Confidence 36788889999999999998 555332110 00 111112211 0111121 11233333344454
Q ss_pred hCC------hhHHHHHHHHHHHHHHHhhhhhhccccccccc-c--cCCCCCchhHHHHHHHHhcCCHHHHHHHh
Q 044240 251 ADN------AHALKMATRMVEYFYNRVQKVIRKYSVARHWQ-Y--LNEEPGGMNDVLYRLFSITKDPRHLFLAH 315 (859)
Q Consensus 251 tG~------~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~-~--l~~E~GGmneaL~~LY~~TGd~ryL~LA~ 315 (859)
-.+ .+.|+-|+++-+|..+.-+......+.....+ . ...| +..+-+|||+.|||++||+.+.
T Consensus 158 fk~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~~~~~~~Y~s~~~~DE---l~WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 158 FKSSDSTYSDTLLKHAKQLFNFADKYRGSYSESIPEVQDYYNSTGYGDE---LLWAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCccCCCCCCcccccH---HHHHHHHHHHHhCCHHHHHHHH
Confidence 333 46788888888887653111100001000000 0 0112 4578889999999999999874
No 40
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=90.14 E-value=2.8 Score=46.61 Aligned_cols=130 Identities=17% Similarity=0.219 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHhc----CChhHHHHHHHHHHHHHHHhhhCCCccccccCCchhhhccccCCCcccchhhhH-HHhHHHHH
Q 044240 173 HYLSASALMWAST----HNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPSRYFDHLEALKPVWAPYYTIHK-ILAGLLDQ 247 (859)
Q Consensus 173 h~LsA~a~~~a~t----~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~~~r~~~l~~~w~pyy~~Hk-I~aGLld~ 247 (859)
|=|-|+-+++... .++.+.+-++.-||.+.+.|- ++|- ||... .+.++.-+.||-+-- +.--|..+
T Consensus 222 hGLagI~~vLm~~~L~~d~~~~~~dVK~sldym~~~rf--psGN---yP~s~----~~~~drLVhWcHGApGv~~~L~kA 292 (403)
T KOG2787|consen 222 HGLAGILYVLMDPTLKVDQPALLKDVKGSLDYMIQNRF--PSGN---YPSSE----GNKRDRLVHWCHGAPGVAYTLAKA 292 (403)
T ss_pred hhHHHHHHHHhCCCCCCcchhHHHhhhhHHHHHHHccC--CCCC---CCccc----CCCcceeeeeccCCchHHHHHHHH
Confidence 4455555555432 356788888899999988887 8775 44221 111121122231110 22234478
Q ss_pred HHHhCChhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCCCCchhHHHHHHHHhcCCHHHHHHHhhccc
Q 044240 248 YKYADNAHALKMATRMVEYFYNRVQKVIRKYSVARHWQYLNEEPGGMNDVLYRLFSITKDPRHLFLAHLFAK 319 (859)
Q Consensus 248 y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~f~~ 319 (859)
|+.-+.++.|+.+...+|-+.++ .++.+ ..+.+ |.- .|-.-++.-||+.|||.+||-=|+.|.+
T Consensus 293 y~VF~Eekyl~aa~ecadvVW~r--GlLkk----g~Gic-hGv-aGNaYvFLsLyRLT~d~kYlyRA~kFae 356 (403)
T KOG2787|consen 293 YQVFKEEKYLEAAMECADVVWKR--GLLKK----GVGIC-HGV-AGNAYVFLSLYRLTGDMKYLYRAKKFAE 356 (403)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHh--hhhhc----CCccc-ccc-cCchhhhHhHHHHcCcHHHHHHHHHHHH
Confidence 99999999999999999999875 12111 11111 111 1334688899999999999999998864
No 41
>PLN02909 Endoglucanase
Probab=88.36 E-value=43 Score=39.90 Aligned_cols=120 Identities=10% Similarity=0.010 Sum_probs=64.1
Q ss_pred ChhHHHHHHHHHHHHHHHhhhCCCccccccC-C-----chhhhccccCCCcccchh----------hhHHHhHHHHHHHH
Q 044240 187 NDTLKEKMSAVVSALSHCQKKIGSGYLSAFP-S-----RYFDHLEALKPVWAPYYT----------IHKILAGLLDQYKY 250 (859)
Q Consensus 187 D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~-~-----~~~~r~~~l~~~w~pyy~----------~HkI~aGLld~y~~ 250 (859)
-+.+++.++.-+|.|++||. .+|-+-.-- . ..+.+-|+.... -|.|. .-.+-++|-.+++.
T Consensus 119 ~~d~ldeikw~~D~llk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~-R~~~~i~~~~pgtd~a~~~AAAlA~as~v 195 (486)
T PLN02909 119 LENVRAAIRWGTDYFLKAAS--RKNRLYVQVGDPNLDHQCWVRPENMKTP-RTVLEIDEKTPGTEIAAETAAAMAASSMV 195 (486)
T ss_pred hHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhccCC-ceeEecCCCCCCcHHHHHHHHHHHHHHHh
Confidence 47888999999999999998 555332210 0 011111211100 11111 11233344344554
Q ss_pred hCC------hhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCCCCc----hhHHHHHHHHhcCCHHHHHHHhh
Q 044240 251 ADN------AHALKMATRMVEYFYNRVQKVIRKYSVARHWQYLNEEPGG----MNDVLYRLFSITKDPRHLFLAHL 316 (859)
Q Consensus 251 tG~------~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GG----mneaL~~LY~~TGd~ryL~LA~~ 316 (859)
-.+ ++.|+.|+++-+|..+.-+ .+.... ..-...+| +..+-+|||+.|||++||+.++.
T Consensus 196 fk~~D~~yA~~lL~~Ak~~y~fA~~~~g----~y~~~~---~~y~s~s~y~DEl~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 196 FRHVDHKYSRRLLNKAKLLFKFAKAHKG----TYDGEC---PFYCSYSGYNDELLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHhCCC----CcCCCC---CccccCCCcchHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 333 4678888888888765311 111110 01011111 45788899999999999997664
No 42
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=86.01 E-value=10 Score=43.14 Aligned_cols=139 Identities=15% Similarity=0.145 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHhc-CChhHHHHHHHHHHHHHHHhhhCCCc-cccc-cCCc-hhhhc-cc---cCCCcccchhhhHHHhH
Q 044240 172 GHYLSASALMWAST-HNDTLKEKMSAVVSALSHCQKKIGSG-YLSA-FPSR-YFDHL-EA---LKPVWAPYYTIHKILAG 243 (859)
Q Consensus 172 Gh~LsA~a~~~a~t-~D~~L~~k~d~~Vd~l~~~Q~~~~dG-YL~a-~~~~-~~~r~-~~---l~~~w~pyy~~HkI~aG 243 (859)
.=.+.+++.++..+ +++..++.+.+.++.+.+.+.....| |... ++.. ....- .. ....|.-=-.+ |...
T Consensus 175 aGi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~G--i~~~ 252 (382)
T cd04793 175 AGPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPG--IARA 252 (382)
T ss_pred hHHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHH--HHHH
Confidence 33455566666666 89999999999999888877633332 1111 1100 00000 00 11222211122 6667
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCCCC--chhHHHHHHHHhcCCHHHHHHHhhccc
Q 044240 244 LLDQYKYADNAHALKMATRMVEYFYNRVQKVIRKYSVARHWQYLNEEPG--GMNDVLYRLFSITKDPRHLFLAHLFAK 319 (859)
Q Consensus 244 Lld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~G--GmneaL~~LY~~TGd~ryL~LA~~f~~ 319 (859)
++..++.+++++.++++.+...-+.++.... . ....+ .+ =+| |+.+.|.++|+.|+++++++.|+++.+
T Consensus 253 l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~--~l--ChG~~G~~~~l~~~~~~~~~~~~~~~a~~~~~ 323 (382)
T cd04793 253 LQLAGKALDDQKLQEAAEKILKAALKDKKQL-S--KLISP--TL--CHGLAGLLFIFYLLYKDTNTNEFKSALEYLLN 323 (382)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhChhhh-c--cCCCC--Cc--CccHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 7788899999999998888876654332110 0 00011 11 133 678999999999999999999887743
No 43
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=83.75 E-value=0.96 Score=50.13 Aligned_cols=178 Identities=13% Similarity=0.075 Sum_probs=96.8
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHhhhCCCccccccCCchhhhcc----ccCCCcccchhhhHHHhHHHHHH-HHhCChh
Q 044240 181 MWASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPSRYFDHLE----ALKPVWAPYYTIHKILAGLLDQY-KYADNAH 255 (859)
Q Consensus 181 ~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~~~r~~----~l~~~w~pyy~~HkI~aGLld~y-~~tG~~~ 255 (859)
.+..++++.+.+.+..+++.|.+.... .. . .. ......|. +..-.|. .++ |+..|.-.| +.+++++
T Consensus 118 ~~~~~~~~~~l~~i~~~~~~l~~~~~~--~~-~-~~-~~~~~~~~~~~~~~G~aHG--~~G--i~~~L~~~~~~~~~~~~ 188 (355)
T PF05147_consen 118 LYEKTKDPKYLDIIEKILEKLLESIIN--DD-P-SE-NQIGSEWKEGFINLGFAHG--IAG--ILYALLRLYKKGTKDPE 188 (355)
T ss_dssp HHHHHCCHHS-HHHHHHHHHCCCHHCC--CH-T-CC-GSSSHHCHTTBEE-STTTS--HHH--HHHHHCHCCHHT--HHH
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHhh--cc-c-cc-CCCccccCCCCccCCcccc--HHH--HHHHHHHhhhcccCchh
Confidence 344568888888899998888877762 11 0 00 00111110 1111111 122 555666677 5889999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccc----ccccc-cccCCCCC--chhHHHHHHHHhcCCHHHHHHHhhcccccccccccc
Q 044240 256 ALKMATRMVEYFYNRVQKVIRKYS----VARHW-QYLNEEPG--GMNDVLYRLFSITKDPRHLFLAHLFAKPCFLGLLAV 328 (859)
Q Consensus 256 aL~va~~~ad~~~~~~~~~~~~~~----~~~~~-~~l~~E~G--GmneaL~~LY~~TGd~ryL~LA~~f~~~~~~~~la~ 328 (859)
.++++.++.+|..+........++ ..... ....| +| ||..++.++++.++++.+.+.+..+.......
T Consensus 189 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WC-~G~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 263 (355)
T PF05147_consen 189 YLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKSRPSWC-YGSPGILLALLKAYKILDDEEYDEEAEQALESILQK---- 263 (355)
T ss_dssp HHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC--SSS-SSHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhcCcccCCCCCCCCccccccccccc-cCcHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc----
Confidence 999999999999875532111111 00000 11122 44 78899999999999999999888765432210
Q ss_pred cCCCCCCCcccCCcce--eeehhhHHHhcCchHHHHHHHHHHHHhhcc
Q 044240 329 QSNDISDFHVNTHIPL--VIGTQRRYELTGELLHKEMGTFFMDLVNSS 374 (859)
Q Consensus 329 ~~d~l~~~HanthiP~--~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~ 374 (859)
+....-...-|.-. +.-...+|+.++++.|++.++.+++.+.++
T Consensus 264 --~~~~~~~~lCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
T PF05147_consen 264 --GLFLNNPSLCHGTAGILEILLDLYKYTGDEEYKELANKLIQKLLSY 309 (355)
T ss_dssp ---TCTTSS-STTSHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHCTT
T ss_pred --cccCCCCceeCchHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 00000011123321 122567799999999999999999988743
No 44
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=82.84 E-value=7.5 Score=46.09 Aligned_cols=158 Identities=22% Similarity=0.333 Sum_probs=86.6
Q ss_pred hHHHHHhcCCCCCC----CCCCCCcCCCCCccccchhhHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCccccc
Q 044240 140 VWSFRKTAGLRTKG----NAYGGWEDPTSQLRGHFVGHYLSASALMWASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSA 215 (859)
Q Consensus 140 L~nFr~~AGl~~~g----~~~gGWe~~dsdl~GH~~Gh~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a 215 (859)
||+.|-.-||- | ..-|-|-.+++-+ |--+=-+-|=+...|...+|+++.+.-.+--..|.+--. .++=|...
T Consensus 228 lW~~RS~igLl--Gn~idV~tG~W~~~~sGI-GAgiDSfyEYllK~yILfgd~e~lemf~ea~~ai~~y~r-~~~wY~~V 303 (622)
T KOG2429|consen 228 LWSLRSGIGLL--GNHIDVQTGEWTAPDSGI-GAGIDSFYEYLLKGYILFGDPELLEMFNEAYEAIQKYTR-KGPWYVNV 303 (622)
T ss_pred HHhhcCCCCcc--cceeeccccceecccccc-ccchHHHHHHHHHHheecCCHHHHHHHHHHHHHHHHHhh-cCCeEEEE
Confidence 78888776652 2 1346788877766 444445666677778889999998877766555543332 13333322
Q ss_pred cCC--chhhhc-cccCCCcccchhhhHHHhHHHHHHHHhCChhHHHHHHHHHHHHH--HHhhhhhhcccc-------ccc
Q 044240 216 FPS--RYFDHL-EALKPVWAPYYTIHKILAGLLDQYKYADNAHALKMATRMVEYFY--NRVQKVIRKYSV-------ARH 283 (859)
Q Consensus 216 ~~~--~~~~r~-~~l~~~w~pyy~~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~--~~~~~~~~~~~~-------~~~ 283 (859)
.-. ...-.| .++.-. + .||+ ..+|+-+ ++.+-+.-|+. ++++-+++.+.+ .+-
T Consensus 304 ~m~~G~v~~p~~dSLqAf----w------pGlq---vLaGDvd--~A~~~h~~y~~vwkkyG~lPEryN~~~~~~~~~~~ 368 (622)
T KOG2429|consen 304 NMDSGSVSLPWFDSLQAF----W------PGLQ---VLAGDVD--DAIRTHLMYFSVWKKYGFLPERYNLATQEPPPKRE 368 (622)
T ss_pred ecCCCceehHHHhhHHhh----c------cchh---hhhcchH--HHHHHHHHHHHHHHHcCCCcccccccCCCCCCCcc
Confidence 210 000000 011111 1 1221 2344422 22223333332 445433222221 334
Q ss_pred ccccCCCCCchhHHHHHHHHhcCCHHHHHHHhhccc
Q 044240 284 WQYLNEEPGGMNDVLYRLFSITKDPRHLFLAHLFAK 319 (859)
Q Consensus 284 ~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~f~~ 319 (859)
++++.+| +.|+.+.||+.|+|+.||++-..+.+
T Consensus 369 ~YPLRPE---lvEStyyLYrATkdp~yL~vG~~~l~ 401 (622)
T KOG2429|consen 369 GYPLRPE---LVESTYYLYRATKDPFYLHVGEDMLK 401 (622)
T ss_pred cCCCCHH---HHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 5677777 78999999999999999999887753
No 45
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=82.11 E-value=9.9 Score=45.02 Aligned_cols=142 Identities=23% Similarity=0.179 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHhhhC-------CCccccccCCchhhhcc-ccCCCcccch--hhhHH
Q 044240 172 GHYLSASALMWASTHN-DTLKEKMSAVVSALSHCQKKI-------GSGYLSAFPSRYFDHLE-ALKPVWAPYY--TIHKI 240 (859)
Q Consensus 172 Gh~LsA~a~~~a~t~D-~~L~~k~d~~Vd~l~~~Q~~~-------~dGYL~a~~~~~~~r~~-~l~~~w~pyy--~~HkI 240 (859)
|--+|++|.++..++. +++.+.+...++.|.+.--.. +.=|.++-- +.+ ..+..|+|-+ ..-.+
T Consensus 508 GLviSgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g-----~ve~~n~~~~~~~FldDYAFl 582 (786)
T KOG2244|consen 508 GLVISGLAKAGKILKAEPEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASG-----RVEHSNRPSKAPAFLDDYAFL 582 (786)
T ss_pred chhhHHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCc-----ceeccCCccccchhhhhHHHH
Confidence 7889999999988765 488888888777665432211 233333321 111 1346666432 11237
Q ss_pred HhHHHHHHHHhCChhHHHHHHHHHHHHHHHhhh----hhhcccccccc------cccCCCCCc-h-hHHHHHHHHhcCCH
Q 044240 241 LAGLLDQYKYADNAHALKMATRMVEYFYNRVQK----VIRKYSVARHW------QYLNEEPGG-M-NDVLYRLFSITKDP 308 (859)
Q Consensus 241 ~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~----~~~~~~~~~~~------~~l~~E~GG-m-neaL~~LY~~TGd~ 308 (859)
+.||||.|+.+|+...|+-|.++-|=-.+-|=+ .+....++..- ..+.+-.|- + .-.|++||.+++.+
T Consensus 583 I~gLLDlYea~~~~e~LkwA~~LQdtqdklFWdgggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~~e 662 (786)
T KOG2244|consen 583 ISGLLDLYEAGGGIEWLKWAIKLQDTQDKLFWDGGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVAAE 662 (786)
T ss_pred HHHHHHHHHccCchHHHHHHHHHHHHHHHheecCCceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhhHH
Confidence 899999999999999999998887754432211 00000000000 001111110 1 14699999999999
Q ss_pred HHHHHHhhcc
Q 044240 309 RHLFLAHLFA 318 (859)
Q Consensus 309 ryL~LA~~f~ 318 (859)
.||+-|.++.
T Consensus 663 ~yl~ka~~ll 672 (786)
T KOG2244|consen 663 SYLNKAHRLL 672 (786)
T ss_pred HHHHHHHHHH
Confidence 9999987763
No 46
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=80.55 E-value=15 Score=41.02 Aligned_cols=111 Identities=17% Similarity=0.106 Sum_probs=68.1
Q ss_pred ChhHHHHHHHHHHHHHHH-hh--hhhhcccccccccccCCCCC--chhHHHHHHHHhcCCHHHHHHHhhcc----ccccc
Q 044240 253 NAHALKMATRMVEYFYNR-VQ--KVIRKYSVARHWQYLNEEPG--GMNDVLYRLFSITKDPRHLFLAHLFA----KPCFL 323 (859)
Q Consensus 253 ~~~aL~va~~~ad~~~~~-~~--~~~~~~~~~~~~~~l~~E~G--GmneaL~~LY~~TGd~ryL~LA~~f~----~~~~~ 323 (859)
.++.++.+++-.||+++. |. +.+...+..+ -+..|--+| ||...|.+.|++-++++||+-|..-- +..++
T Consensus 240 ~~~~~~dVK~sldym~~~rfpsGNyP~s~~~~~-drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGlL 318 (403)
T KOG2787|consen 240 QPALLKDVKGSLDYMIQNRFPSGNYPSSEGNKR-DRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGLL 318 (403)
T ss_pred chhHHHhhhhHHHHHHHccCCCCCCCcccCCCc-ceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhh
Confidence 345688899999999853 22 1111111111 011121244 79999999999999999999776542 22221
Q ss_pred ccccccCCCCCCCcccCCcce--eeehhhHHHhcCchHHHHHHHHHHHHhhcc
Q 044240 324 GLLAVQSNDISDFHVNTHIPL--VIGTQRRYELTGELLHKEMGTFFMDLVNSS 374 (859)
Q Consensus 324 ~~la~~~d~l~~~HanthiP~--~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~ 374 (859)
. .+.. -.|..- ..-..-+|++|||.+|+-.|..|.+...++
T Consensus 319 k---kg~G-------ichGvaGNaYvFLsLyRLT~d~kYlyRA~kFae~lld~ 361 (403)
T KOG2787|consen 319 K---KGVG-------ICHGVAGNAYVFLSLYRLTGDMKYLYRAKKFAEWLLDY 361 (403)
T ss_pred h---cCCc-------ccccccCchhhhHhHHHHcCcHHHHHHHHHHHHHHHhh
Confidence 1 1000 112211 112667899999999999999999998753
No 47
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=80.36 E-value=4.2 Score=47.69 Aligned_cols=73 Identities=21% Similarity=0.234 Sum_probs=42.5
Q ss_pred HhHHHHHHHHhCChhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCCCC----chhHHHHHHHHhcCCHHHHHHHhh
Q 044240 241 LAGLLDQYKYADNAHALKMATRMVEYFYNRVQKVIRKYSVARHWQYLNEEPG----GMNDVLYRLFSITKDPRHLFLAHL 316 (859)
Q Consensus 241 ~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~G----GmneaL~~LY~~TGd~ryL~LA~~ 316 (859)
+..++-+|+.++++...++++.|++.+. +++ +...+..... ++.... =+..++.+||+.|++++||++|..
T Consensus 390 ll~~vra~~~s~D~~Lw~~~~~m~~~~g--LGd-ig~~~~~~~~--~~~~~~~~sp~~L~allEL~~atq~~~~l~lA~~ 464 (557)
T PF06917_consen 390 LLPYVRAYRLSRDPELWDLARTMAHHFG--LGD-IGNAAGKEPR--VNMQTDNASPYLLFALLELYQATQDARYLELADQ 464 (557)
T ss_dssp HHHHHHHHHHS--HHHHHHHHHHHHHTT---EE--TTBTTBS-E--E-TT-----HHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhcC--ccc-ccCccccccc--cccCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3466688999999999999999998652 222 1111111100 000000 023689999999999999999987
Q ss_pred cc
Q 044240 317 FA 318 (859)
Q Consensus 317 f~ 318 (859)
.-
T Consensus 465 ~g 466 (557)
T PF06917_consen 465 VG 466 (557)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 48
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=76.52 E-value=6.5 Score=43.51 Aligned_cols=132 Identities=18% Similarity=0.220 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHH-----hcCChhHHHHHHHHHHHHHHHhhhCCCccccccCCchhhhccccCCCcccchhhhHHHhHHHH
Q 044240 172 GHYLSASALMWA-----STHNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPSRYFDHLEALKPVWAPYYTIHKILAGLLD 246 (859)
Q Consensus 172 Gh~LsA~a~~~a-----~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld 246 (859)
.|=+++.+.++. .++++++++.+..+++.+.+.+.....+|..........+ +..|.-=-.+ |...++.
T Consensus 166 aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~WC~G~~G--i~~~~~~ 239 (355)
T PF05147_consen 166 AHGIAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKS----RPSWCYGSPG--ILLALLK 239 (355)
T ss_dssp TTSHHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC------SSSSSHHH--HHHHHHH
T ss_pred cccHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCcccccc----ccccccCcHH--HHHHHHH
Confidence 455555555443 5678999999999999999988644566533332111000 2223211123 5556667
Q ss_pred HHHHhCChhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCCCC--chhHHHHHHHHhcCCHHHHHHHhhccc
Q 044240 247 QYKYADNAHALKMATRMVEYFYNRVQKVIRKYSVARHWQYLNEEPG--GMNDVLYRLFSITKDPRHLFLAHLFAK 319 (859)
Q Consensus 247 ~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~G--GmneaL~~LY~~TGd~ryL~LA~~f~~ 319 (859)
.+...+++...+.+......+.++-. . . ....+ =+| |+-+.+..+|+.|++++|.+.|+.+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~---~~~~l--CHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~~ 304 (355)
T PF05147_consen 240 AYKILDDEEYDEEAEQALESILQKGL-F----L---NNPSL--CHGTAGILEILLDLYKYTGDEEYKELANKLIQ 304 (355)
T ss_dssp HHHHCT-HHHHHHHHHHHHHHHHH-T-C----T---TSS-S--TTSHHHHHHHHHHHHHHH--HCCHHHHHHHHH
T ss_pred HHHhhchHHHHHHHHHHHHHHHHccc-c----C---CCCce--eCchHHhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 78888999988888888777654210 0 0 00111 133 678899999999999999999988843
No 49
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=73.54 E-value=31 Score=43.33 Aligned_cols=156 Identities=19% Similarity=0.188 Sum_probs=86.8
Q ss_pred HhcCChhHHHHHHHHHHHHHHHhh-hCCCccccccCCchhhhccccCCCcccchhhhHHHhHHHHHHHHhCChhHHHHHH
Q 044240 183 ASTHNDTLKEKMSAVVSALSHCQK-KIGSGYLSAFPSRYFDHLEALKPVWAPYYTIHKILAGLLDQYKYADNAHALKMAT 261 (859)
Q Consensus 183 a~t~D~~L~~k~d~~Vd~l~~~Q~-~~~dGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~y~~tG~~~aL~va~ 261 (859)
..|+...+++.+.+++..+.+.-+ ++-+==++++ ++.=.-.| +|.--|.++++..+..=+.
T Consensus 661 ~vtgk~~Y~~ia~~~L~~~~~sv~~~~~~~~iga~-----------~G~~g~~y-------al~~I~~~~~~~~l~~~~~ 722 (963)
T COG4403 661 LVTGKDYYKEIAIKALQDSRKSVNNNLNPINIGAF-----------TGLSGYFY-------ALWKIYSVTRDNYLIQSAE 722 (963)
T ss_pred HhcChHHHHHHHHHHHHHHHHhhhhccCCcccccc-----------cccchhhh-------hhHHHHHhcccHHHHHHHH
Confidence 368999999999888877665533 1111112222 12212223 4445577788888777777
Q ss_pred HHHHHHHHHhhhhhhcccccccccccCCCCCchhHHHHHHHHhcCCHHHHHHHhhcccccccccccccCCCCC-CCcccC
Q 044240 262 RMVEYFYNRVQKVIRKYSVARHWQYLNEEPGGMNDVLYRLFSITKDPRHLFLAHLFAKPCFLGLLAVQSNDIS-DFHVNT 340 (859)
Q Consensus 262 ~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~f~~~~~~~~la~~~d~l~-~~Hant 340 (859)
+.+..+......- +. ....+.-- |..-+|+.+|+.|.++|.|++|.-.-+..... +.+.|... -...-.
T Consensus 723 ~~i~~le~~v~~~--~~-----~d~i~Gl~-g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~--~v~~d~s~~~l~gfs 792 (963)
T COG4403 723 NSIRHLEILVQKS--KD-----PDFINGLA-GVICVLVSIYKLTDEPKFLELAISLGRILMEK--IVGNDSSETVLLGFS 792 (963)
T ss_pred HHHHHHHHHHhhc--cC-----cchhhccH-HHHHHHHHHHhhccchHHHHHHHHHHHHHHHH--hhccccccceecccc
Confidence 7766665443210 00 01111111 34468999999999999999997765432211 12222210 001112
Q ss_pred Ccc--eeeehhhHHHhcCchHHHHHHHH
Q 044240 341 HIP--LVIGTQRRYELTGELLHKEMGTF 366 (859)
Q Consensus 341 hiP--~~~G~a~~Y~~TGD~~y~~aa~~ 366 (859)
|.. ++...+.+|++|||+.+++..+.
T Consensus 793 hg~sgi~~tL~~ly~~T~e~~l~~~i~e 820 (963)
T COG4403 793 HGASGIILTLLKLYEATGEESLLKKIKE 820 (963)
T ss_pred cchHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 332 22336677999999999887753
No 50
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=71.68 E-value=18 Score=40.53 Aligned_cols=145 Identities=18% Similarity=0.352 Sum_probs=84.7
Q ss_pred CCCCCcCCCCCccccchhhHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCccccccCCchhhhccccCCCcccc
Q 044240 155 AYGGWEDPTSQLRGHFVGHYLSASALMWASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPSRYFDHLEALKPVWAPY 234 (859)
Q Consensus 155 ~~gGWe~~dsdl~GH~~Gh~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~~~r~~~l~~~w~py 234 (859)
..|.|..-||.+ |--.--|-+=+-.+|...||+.+.++.+.--|.|.+ |++--|- |-. -.+|-|.
T Consensus 235 hsgdw~rkdsgi-gagidsyyey~lkayillgddsfldrfn~hydai~r--------yi~k~pi--~ld----vhihkp~ 299 (587)
T KOG2430|consen 235 HSGDWTRKDSGI-GAGIDSYYEYLLKAYILLGDDSFLDRFNKHYDAIKR--------YINKGPI--FLD----VHIHKPM 299 (587)
T ss_pred ccCcceecccCc-CcchHHHHHHHHHHhheeccHHHHHHHHHHHHHHHH--------HhcCCCe--EEE----Eecccch
Confidence 568898877766 444456777778888899999999999887777763 3333221 000 1233444
Q ss_pred hhhhHHHhHHHHHHH----HhCC-hhHHHHHHHHHHHHHHHhhhhhh-cc--ccccccc--ccCCCCCchhHHHHHHHHh
Q 044240 235 YTIHKILAGLLDQYK----YADN-AHALKMATRMVEYFYNRVQKVIR-KY--SVARHWQ--YLNEEPGGMNDVLYRLFSI 304 (859)
Q Consensus 235 y~~HkI~aGLld~y~----~tG~-~~aL~va~~~ad~~~~~~~~~~~-~~--~~~~~~~--~l~~E~GGmneaL~~LY~~ 304 (859)
-+..-.|.+|++.+- ..|+ ..|.++-.-+-.-+.+. +.++ .+ ..+-||. ++.+| ..++-|-||+.
T Consensus 300 l~ar~~mdallaf~pglqvlkgdik~aie~heml~qvikkh--~flpeaft~df~vhwaehpirpe---faestyflyka 374 (587)
T KOG2430|consen 300 LAARGFMDALLAFFPGLQVLKGDIKEAIEMHEMLFQVIKKH--KFLPEAFTHDFQVHWAEHPIRPE---FAESTYFLYKA 374 (587)
T ss_pred hhHhhHHHHHHHhCcchhhhccccHHHHHHHHHHHHHHHHc--ccChHhhcccceeecccCCCChh---hhhhheeeecc
Confidence 444445556654331 2344 23333332222222210 1111 11 1234564 45566 45899999999
Q ss_pred cCCHHHHHHHhhccc
Q 044240 305 TKDPRHLFLAHLFAK 319 (859)
Q Consensus 305 TGd~ryL~LA~~f~~ 319 (859)
|||+-||+.|+.+.+
T Consensus 375 t~dp~yl~v~k~iid 389 (587)
T KOG2430|consen 375 TGDPHYLEVAKQIID 389 (587)
T ss_pred cCCchHHHHHHHHHH
Confidence 999999999998854
No 51
>PLN02266 endoglucanase
Probab=69.00 E-value=68 Score=38.50 Aligned_cols=126 Identities=10% Similarity=0.012 Sum_probs=64.1
Q ss_pred ChhHHHHHHHHHHHHHHHhhhCCCccccccC-Cc-----hhhhccccCCCcccchh----------hhHHHhHHHHHHHH
Q 044240 187 NDTLKEKMSAVVSALSHCQKKIGSGYLSAFP-SR-----YFDHLEALKPVWAPYYT----------IHKILAGLLDQYKY 250 (859)
Q Consensus 187 D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~-~~-----~~~r~~~l~~~w~pyy~----------~HkI~aGLld~y~~ 250 (859)
-+.+++.++.-+|.|++||. .||-+-.-- .. .|.+-|+... --|.|. .-.+-++|-.+++.
T Consensus 129 ~pd~Ldelkw~~D~llk~~~--~~~~vy~qVg~~~~Dh~~W~~Pe~~~~-~R~~y~i~~~~pgsd~a~e~AAALAaas~v 205 (510)
T PLN02266 129 LQNAKDAIRWATDYLLKATA--HPDTIYVQVGDANKDHACWERPEDMDT-PRSVFKVDKNTPGSDVAAETAAALAAASLV 205 (510)
T ss_pred cHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhcCC-CCeeEEeCCCCCchHHHHHHHHHHHHHHHH
Confidence 47888999999999999997 444322110 00 1111111110 001111 01122344344554
Q ss_pred hCC------hhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCCCCc----hhHHHHHHHHhcCCHHHHHHHhhc
Q 044240 251 ADN------AHALKMATRMVEYFYNRVQKVIRKYSVARHWQYLNEEPGG----MNDVLYRLFSITKDPRHLFLAHLF 317 (859)
Q Consensus 251 tG~------~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GG----mneaL~~LY~~TGd~ryL~LA~~f 317 (859)
-.+ ++.|+.|+++-+|..+.-+.. .. .+.......-...+| +..+-+|||+.|||++||+.++..
T Consensus 206 fk~~D~~yA~~~L~~Ak~ly~fa~~~~g~y-~~-~~~~~~~~~y~s~s~~~DEl~WAAawLy~ATGd~~Yl~~~~~~ 280 (510)
T PLN02266 206 FRKSDPTYSKLLVRRAIRVFQFADKYRGAY-SN-GLKPDVCPFYCSYSGYQDELLWGAAWLHKATKNPTYLNYIQVN 280 (510)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHhCCCCc-cC-CCCcccCCCcccCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 332 467888999888876531110 00 000000001111122 346778999999999999987654
No 52
>PLN02340 endoglucanase
Probab=68.95 E-value=69 Score=39.32 Aligned_cols=126 Identities=11% Similarity=-0.022 Sum_probs=64.6
Q ss_pred ChhHHHHHHHHHHHHHHHhhhCCCcccccc------CCchhhhccccC---CCcc-----cch-hhhHHHhHHHHHHHHh
Q 044240 187 NDTLKEKMSAVVSALSHCQKKIGSGYLSAF------PSRYFDHLEALK---PVWA-----PYY-TIHKILAGLLDQYKYA 251 (859)
Q Consensus 187 D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~------~~~~~~r~~~l~---~~w~-----pyy-~~HkI~aGLld~y~~t 251 (859)
-+.+++.++.-.|.+++||. .++-+-.- .-..|.+-|+.. ..+. |-- ..--+-|+|-++++.-
T Consensus 115 ~~~~ldeirw~~Dyllk~~~--~~~~~~~qVGdg~~DH~~W~~PE~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaas~vf 192 (614)
T PLN02340 115 MQRTLWAIRWGTDYFIKAHT--QPNVLWGQVGDGDSDHYCWERAEDMTTPRTAYKLDQNHPGSDLAGETAAALAAASKAF 192 (614)
T ss_pred hHHHHHHHHHHHHHHHHhcC--CCCeEEEEeCCCCcccccCCChhhcCCcCceeecCCCCCccHHHHHHHHHHHHHHHhc
Confidence 36788888999999999987 43322110 001122222211 1100 100 0011334443444433
Q ss_pred CC------hhHHHHHHHHHHHHHHHhhhhhhcccccc-cccc--cCCCCCchhHHHHHHHHhcCCHHHHHHHhhc
Q 044240 252 DN------AHALKMATRMVEYFYNRVQKVIRKYSVAR-HWQY--LNEEPGGMNDVLYRLFSITKDPRHLFLAHLF 317 (859)
Q Consensus 252 G~------~~aL~va~~~ad~~~~~~~~~~~~~~~~~-~~~~--l~~E~GGmneaL~~LY~~TGd~ryL~LA~~f 317 (859)
.+ ++.|+.|+++-+|..+.-+..-...+... .... ...| +..+-+|||+.|||+.||+.+...
T Consensus 193 k~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~s~~~a~~~Y~ss~~~DE---l~WAAawLy~ATgd~~Yl~~~~~~ 264 (614)
T PLN02340 193 KPYNSSYSDLLLVHAKQLFSFADKFRGLYDDSIQNAKKFYTSSGYSDE---LLWAAAWLYRATGDEYYLKYVVDN 264 (614)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhCCCCccCCCCccccCCCCCCcchH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 32 46788899988888753221100000000 0000 1122 456888999999999999988754
No 53
>PLN02175 endoglucanase
Probab=67.63 E-value=49 Score=39.43 Aligned_cols=103 Identities=14% Similarity=-0.026 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhccccccc--ccccCCCCCc----hhHHHHHHHHhcCCHHHHHHHhhccccccccccc
Q 044240 254 AHALKMATRMVEYFYNRVQKVIRKYSVARH--WQYLNEEPGG----MNDVLYRLFSITKDPRHLFLAHLFAKPCFLGLLA 327 (859)
Q Consensus 254 ~~aL~va~~~ad~~~~~~~~~~~~~~~~~~--~~~l~~E~GG----mneaL~~LY~~TGd~ryL~LA~~f~~~~~~~~la 327 (859)
++.|+.|+++-+|..+.-+. +..... ....-+..+| +..+-+|||+.|||++||+.++.+.....
T Consensus 194 ~~lL~~Ak~ly~fA~~~~g~----y~~~~~~~~~~~Y~s~s~y~DEl~WAAawLY~ATgd~~Yl~~~~~~~~~~~----- 264 (484)
T PLN02175 194 RLLLATAKKVMQFAIQYRGA----YSDSLSSSVCPFYCSYSGYKDELMWGASWLLRATNDPYYANFIKSLGGGDQ----- 264 (484)
T ss_pred HHHHHHHHHHHHHHHhCCCC----cccCccccccCccccCCCccHHHHHHHHHHHHHhCCHHHHHHHHHcCCCCC-----
Confidence 36788899988888753221 111000 0000011122 33677899999999999997776421100
Q ss_pred ccCCCCCCCcccCCcceeeehhhH-HH------hcCchHHHHHHHHHHHHhhc
Q 044240 328 VQSNDISDFHVNTHIPLVIGTQRR-YE------LTGELLHKEMGTFFMDLVNS 373 (859)
Q Consensus 328 ~~~d~l~~~HanthiP~~~G~a~~-Y~------~TGD~~y~~aa~~fwd~V~~ 373 (859)
..... ..+ +..|.+++ ++ .++.+.|++.+++|+.....
T Consensus 265 --~~~~~--Wd~----k~~g~~vLla~~~~~~~~~~~~~y~~~~~~~~~~~~~ 309 (484)
T PLN02175 265 --PDIFS--WDN----KYAGAYVLLSRRALLNKDSNFEQYKQAAENFICKILP 309 (484)
T ss_pred --CCccC--CcC----HHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccC
Confidence 00000 001 22333333 33 23446899999999887653
No 54
>PF15095 IL33: Interleukin 33; PDB: 2KLL_A.
Probab=66.42 E-value=78 Score=33.78 Aligned_cols=87 Identities=20% Similarity=0.277 Sum_probs=50.4
Q ss_pred cceEEEEEEEecCCCCCcccccccCCCceee--ecCCCCCCceeecCCCceeEEEecCCCCCCCceEEEeecCCCCCCeE
Q 044240 698 AVRATFRLIILEDSSSFKYSSYRDFIGKSVM--LEPFSHPGMLVAPKGKHHELVVTNSSRAEGSSVFRLVSGLDGKDNTV 775 (859)
Q Consensus 698 ~~~~~fr~~~~~~~~~~~~~~p~~~~g~~v~--l~p~~~p~~~v~~~~~~~~l~v~~~~~~~~~s~f~~vpgl~g~~~~v 775 (859)
-=-..||. ......| -.+.-+.+|+.+| |.|-..++-.+-..+.+..+-+.---.+.+|+.|.+.--- .+..|
T Consensus 157 KDKVLlry-YeSq~pS--~esgdgvDGk~LMVnlSPtkdkDf~LHAN~keHSVeLqKcE~~lpdQaff~lh~~--ss~~v 231 (268)
T PF15095_consen 157 KDKVLLRY-YESQCPS--SESGDGVDGKKLMVNLSPTKDKDFLLHANNKEHSVELQKCENPLPDQAFFVLHKK--SSECV 231 (268)
T ss_dssp ---EEEEE-EE----T--TTS----S---EEEEEESS--SSEEEEEETTTTEEEEEE--SS--TTT-EEEEE---SSS-E
T ss_pred cceEEEEe-ccCCCCc--ccCCCCccceEEEEEcCCccchheEEecCCccceeeeeecCCCCCcceeEEEecC--CCcee
Confidence 34577886 6543322 1234446788887 9999999998888888888877665566888888887433 36899
Q ss_pred EEeecCCcceEEEE
Q 044240 776 SLESKSHKGCYVYS 789 (859)
Q Consensus 776 sles~~~pg~~~~~ 789 (859)
|||-.|+||.|+-+
T Consensus 232 sfeck~~pg~~igv 245 (268)
T PF15095_consen 232 SFECKNNPGVFIGV 245 (268)
T ss_dssp EEEESSSTTEEEEE
T ss_pred EEEecCCCceEEee
Confidence 99999999999986
No 55
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=65.56 E-value=12 Score=43.21 Aligned_cols=81 Identities=20% Similarity=0.269 Sum_probs=55.6
Q ss_pred HHHhHHHHHHHHhCChhHHHHHHHHHHHHHHHhhhh--hhccc--c---cc---cc--cccCCCCCchhHHHHHHHHhcC
Q 044240 239 KILAGLLDQYKYADNAHALKMATRMVEYFYNRVQKV--IRKYS--V---AR---HW--QYLNEEPGGMNDVLYRLFSITK 306 (859)
Q Consensus 239 kI~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~--~~~~~--~---~~---~~--~~l~~E~GGmneaL~~LY~~TG 306 (859)
.|+-|||.+|..+|++-.|+.|..++|-+...|+.. |+--+ + .. +| .+...|.-.+-+-+-.|-++||
T Consensus 179 RvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p~~~~~SStaEvttiQlEfr~Ls~ltg 258 (546)
T KOG2431|consen 179 RVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPPRWTGDSSTAEVTTIQLEFRYLSRLTG 258 (546)
T ss_pred HHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCCCCCCccchhhheeeeeeHHHHHhhcC
Confidence 377899999999999999999999999988777421 11000 0 01 12 1111233333455677889999
Q ss_pred CHHHHHHHhhccc
Q 044240 307 DPRHLFLAHLFAK 319 (859)
Q Consensus 307 d~ryL~LA~~f~~ 319 (859)
|++|-++|.+..+
T Consensus 259 d~kY~~~a~kv~e 271 (546)
T KOG2431|consen 259 DPKYEELAEKVTE 271 (546)
T ss_pred CchHHHHHHHHHH
Confidence 9999999988754
No 56
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=65.21 E-value=29 Score=40.17 Aligned_cols=186 Identities=20% Similarity=0.231 Sum_probs=97.7
Q ss_pred HhcCChhHHHHHHHHHHHHHHHhhhCCCccccccCC---chhhhccccC-CCcc-cchhhhHHHhHHHHHHHHhCChh--
Q 044240 183 ASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPS---RYFDHLEALK-PVWA-PYYTIHKILAGLLDQYKYADNAH-- 255 (859)
Q Consensus 183 a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~---~~~~r~~~l~-~~w~-pyy~~HkI~aGLld~y~~tG~~~-- 255 (859)
+.|||+.+.+-++.+.+-|...-.+..||-..-|-. ..|.. ..++ +... .|| .-|+-++..||+.-
T Consensus 255 ~ltgd~kY~~~a~kv~ehih~~~~~~~dGLvPi~in~~tG~F~~-~tI~lGaRgDSyY------EYLlKQwlQtg~~~~~ 327 (546)
T KOG2431|consen 255 RLTGDPKYEELAEKVTEHIHGLGKKKHDGLVPIFINPNTGLFVG-STITLGARGDSYY------EYLLKQWLQTGKSLTY 327 (546)
T ss_pred hhcCCchHHHHHHHHHHHHhccCccccCCeeeEEEcCCCCcccc-ceEEeccccchHH------HHHHHHHHHcccchhH
Confidence 358999999999999998887777667886655531 11211 1111 1111 455 46778888888864
Q ss_pred ----HHHHHHHHHHHHHHHhhhhhhcccccccccccC---------------CCCCchhHHHHHHHHhcCCHHHHHHHhh
Q 044240 256 ----ALKMATRMVEYFYNRVQKVIRKYSVARHWQYLN---------------EEPGGMNDVLYRLFSITKDPRHLFLAHL 316 (859)
Q Consensus 256 ----aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~---------------~E~GGmneaL~~LY~~TGd~ryL~LA~~ 316 (859)
..+.+..|-.+++++-.+ ..+|.++. |-.+|. .++=-.--.+-++++|+||+.
T Consensus 328 l~~dy~~am~gv~~~Llr~S~P-------~~~~fiGEl~~G~~fsPKMDHLVCFlpGt-L~lG~~~Gl~~~~~hl~lA~~ 399 (546)
T KOG2431|consen 328 LRDDYIEAMEGVRKHLLRQSKP-------NKLWFIGELPHGLQFSPKMDHLVCFLPGT-LALGSTNGLPASEEHLELAQE 399 (546)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC-------cceEEEEecccccccCcccceEEEeecch-hhhccccCCCcchHHHHHHHH
Confidence 223344444444433211 11222111 111110 111111123446789999998
Q ss_pred cccccc---------ccccccc--------CCCC----CCCcccCCcc-eeeehhhHHHhcCchHHHHHHHHHHHHhhcc
Q 044240 317 FAKPCF---------LGLLAVQ--------SNDI----SDFHVNTHIP-LVIGTQRRYELTGELLHKEMGTFFMDLVNSS 374 (859)
Q Consensus 317 f~~~~~---------~~~la~~--------~d~l----~~~HanthiP-~~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~ 374 (859)
+-+.|+ +.|.... +.++ ...| |=.-| .++..--+|++|||.+|++..=..++...++
T Consensus 400 l~~TCyqMY~~~~TGLaPEIv~Fn~~~~~~~~DiyvKp~D~H-nLlRPEtVESlfylYriT~D~kYqewGW~if~sfeky 478 (546)
T KOG2431|consen 400 LMETCYQMYRQNPTGLAPEIVHFNLYPQPGKNDIYVKPLDRH-NLLRPETVESLFYLYRITGDRKYQEWGWEIFQSFEKY 478 (546)
T ss_pred HHHHHHHHHccCcCCCCceEEEEeccCCCccCceeeccchhh-cccChHHHhhhheeeEecCCchHHHHhHHHHHHHHHh
Confidence 865543 1111100 0000 0011 11222 2345566799999999999766666666555
Q ss_pred CeEeecCCCC
Q 044240 375 HTYATGGTSV 384 (859)
Q Consensus 375 h~y~TGG~g~ 384 (859)
--..+||.++
T Consensus 479 trv~~ggytS 488 (546)
T KOG2431|consen 479 TRVPSGGYTS 488 (546)
T ss_pred cccCCCCccc
Confidence 5566788876
No 57
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=64.26 E-value=6.7 Score=36.02 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCccccccCCchhhhccccCCCcccchhhhHHHhHHHHHHHHhC
Q 044240 173 HYLSASALMWASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPSRYFDHLEALKPVWAPYYTIHKILAGLLDQYKYAD 252 (859)
Q Consensus 173 h~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~y~~tG 252 (859)
-...+++.++...+++...+.+++.++.|.++|. +||-++..+.+. .+++.+-+ ..+ ..+...+
T Consensus 27 ~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~--~dG~w~~~~~~~------------~~~t~~~~-~~l-~~~~~~~ 90 (109)
T PF13243_consen 27 FVTAALILALAAAGDAAVDEAIKKAIDWLLSHQN--PDGGWGYSGGEY------------VSMTAAAI-AAL-ALAGVYP 90 (109)
T ss_dssp --------------TS-SSBSSHHHHHHHHH-----TTS--S-TS--H------------HHHHHHHH-HHH-HHHHTT-
T ss_pred cccccccccccccCCCCcHHHHHHHHHHHHHhcC--CCCCCCCcCCCC------------HHHHHHHH-HHH-HHhCCCC
Confidence 4445566666677888999999999999999999 898655432110 12222222 111 2233333
Q ss_pred ChhHHHHHHHHHHHHHHH
Q 044240 253 NAHALKMATRMVEYFYNR 270 (859)
Q Consensus 253 ~~~aL~va~~~ad~~~~~ 270 (859)
-.+.+.+..+||.+.
T Consensus 91 ---~~~~~~r~~~wi~~~ 105 (109)
T PF13243_consen 91 ---DDEAVERGLEWILSH 105 (109)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHc
Confidence 345678888998754
No 58
>PLN02308 endoglucanase
Probab=63.87 E-value=49 Score=39.51 Aligned_cols=124 Identities=10% Similarity=-0.027 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhCCCccccccC-C-----chhhhcccc---CCCcc-----cch-hhhHHHhHHHHHHHHhC
Q 044240 188 DTLKEKMSAVVSALSHCQKKIGSGYLSAFP-S-----RYFDHLEAL---KPVWA-----PYY-TIHKILAGLLDQYKYAD 252 (859)
Q Consensus 188 ~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~-~-----~~~~r~~~l---~~~w~-----pyy-~~HkI~aGLld~y~~tG 252 (859)
+.+++.+..-.|.|.+||. +||.+-.-- . ..|.+-|+. +.... |-- ..-.+-++|-.+++.-.
T Consensus 112 ~~~ldeikw~~D~llkm~~--~~~~vy~qVg~~~~dh~~W~~Pe~~~~~R~~y~~~~~~pgSd~a~~~AAAlA~as~vf~ 189 (492)
T PLN02308 112 ENAVKAVKWATDYLMKATA--IPNVVYVQVGDAYSDHNCWERPEDMDTLRTVYKIDPSHPGSDVAGETAAALAAASIVFR 189 (492)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEecCCCCCccCCCChhHcCCcceEEecCCCCCcchHHHHHHHHHHHHHHhcc
Confidence 4567777888999999998 666542210 0 011111111 11110 100 11123334435555543
Q ss_pred C------hhHHHHHHHHHHHHHHHhhhhhhcccccccc-cc----cCCCCCchhHHHHHHHHhcCCHHHHHHHhh
Q 044240 253 N------AHALKMATRMVEYFYNRVQKVIRKYSVARHW-QY----LNEEPGGMNDVLYRLFSITKDPRHLFLAHL 316 (859)
Q Consensus 253 ~------~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~-~~----l~~E~GGmneaL~~LY~~TGd~ryL~LA~~ 316 (859)
+ ++.|+.|+++-+|..+.-+..........-. +. ...| +..+-+|||+.|||++||+.++.
T Consensus 190 ~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~~~~~~~~Y~~~s~~~DE---l~WAAawLy~ATgd~~Yl~~~~~ 261 (492)
T PLN02308 190 KRDPAYSRLLLDRAVRVFAFADKYRGAYSSSLHAAVCPFYCDFNGYQDE---LLWGAAWLHKASRRREYREYIVK 261 (492)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccCCCcCCCCcccHH---HHHHHHHHHHHhCCHHHHHHHHH
Confidence 2 4678888888888865321110000000000 00 0112 34678899999999999997655
No 59
>PLN02613 endoglucanase
Probab=61.47 E-value=88 Score=37.50 Aligned_cols=122 Identities=12% Similarity=0.119 Sum_probs=63.0
Q ss_pred CChhHHHHHHHHHHHHHHHhhh-------CCCccccccCCchhhhcccc---CCCcc-----cchh-hhHHHhHHHHHHH
Q 044240 186 HNDTLKEKMSAVVSALSHCQKK-------IGSGYLSAFPSRYFDHLEAL---KPVWA-----PYYT-IHKILAGLLDQYK 249 (859)
Q Consensus 186 ~D~~L~~k~d~~Vd~l~~~Q~~-------~~dGYL~a~~~~~~~r~~~l---~~~w~-----pyy~-~HkI~aGLld~y~ 249 (859)
+.+.+++.++.-.|.|.+||.. .+||-..- ..|.+-|.. +.... |--. .-..-++|-.+++
T Consensus 110 ~~~d~ldeikw~lD~llkm~~~~~~~~~QVGdg~~dH---~~W~~Pe~~~~~R~~~~~t~~~pgTd~a~~~AAALAaas~ 186 (498)
T PLN02613 110 QLGYLRSAIRWGTDFILRAHTSPTTLYTQVGDGNADH---QCWERPEDMDTPRTLYKITSSSPGSEAAGEAAAALAAASL 186 (498)
T ss_pred CchHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCccc---cccCCccccCCCCeeEecCCCCCccHHHHHHHHHHHHHHH
Confidence 3578889999999999999862 13442100 011111111 11111 1110 0112233334455
Q ss_pred HhCC------hhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCCCCc----hhHHHHHHHHhcCCHHHHHHHhhc
Q 044240 250 YADN------AHALKMATRMVEYFYNRVQKVIRKYSVARHWQYLNEEPGG----MNDVLYRLFSITKDPRHLFLAHLF 317 (859)
Q Consensus 250 ~tG~------~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GG----mneaL~~LY~~TGd~ryL~LA~~f 317 (859)
.-.+ ++.|+.|+++-+|..+.-+ .+.... ..-...+| +..+-+|||+.|||++||+.++..
T Consensus 187 vfk~~D~~yA~~~L~~Ak~ly~~a~~~~g----~y~~~~---~~y~s~s~~~DEl~WAAawLy~aTGd~~Yl~~~~~~ 257 (498)
T PLN02613 187 VFKDVDSSYSSKLLNHARSLFEFADKYRG----SYQASC---PFYCSYSGYQDELLWAAAWLYKATGEKKYLNYVISN 257 (498)
T ss_pred hcccCCHHHHHHHHHHHHHHHHHHHhCCC----CcCCCC---CcccccCccchHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4332 4678888888888865311 111100 00011111 346778999999999999977654
No 60
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=58.84 E-value=43 Score=39.65 Aligned_cols=87 Identities=17% Similarity=0.297 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCccccccCCchhhhccccCCCcccchhhhHHHhHHHHHHHH
Q 044240 171 VGHYLSASALMWASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPSRYFDHLEALKPVWAPYYTIHKILAGLLDQYKY 250 (859)
Q Consensus 171 ~Gh~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~y~~ 250 (859)
-++||=+++.+|..++|++|.+.+..|.... +=|=|+..+... .+.+.....-.|| ++.++++.|++
T Consensus 386 ~~~yll~~vra~~~s~D~~Lw~~~~~m~~~~-------gLGdig~~~~~~-~~~~~~~~~~sp~-----~L~allEL~~a 452 (557)
T PF06917_consen 386 DPDYLLPYVRAYRLSRDPELWDLARTMAHHF-------GLGDIGNAAGKE-PRVNMQTDNASPY-----LLFALLELYQA 452 (557)
T ss_dssp -HHHHHHHHHHHHHS--HHHHHHHHHHHHHT-------T-EE-TTBTTBS--EE-TT-----HH-----HHHHHHHHHHH
T ss_pred chhHhHHHHHHHHcCCCHHHHHHHHHHHhhc-------CcccccCccccc-cccccCCCCCCHH-----HHHHHHHHHHH
Confidence 4789999999999999999998888776532 445555543211 1111112333444 44577799999
Q ss_pred hCChhHHHHHHHHHHHHHHH
Q 044240 251 ADNAHALKMATRMVEYFYNR 270 (859)
Q Consensus 251 tG~~~aL~va~~~ad~~~~~ 270 (859)
|++++.|+.|.++++-+.++
T Consensus 453 tq~~~~l~lA~~~g~~l~~~ 472 (557)
T PF06917_consen 453 TQDARYLELADQVGENLFEQ 472 (557)
T ss_dssp H--HHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 61
>PLN00119 endoglucanase
Probab=56.10 E-value=76 Score=37.93 Aligned_cols=128 Identities=9% Similarity=-0.050 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhCCCccccccC-----C-chhhhcccc---CCCc-----ccc-hhhhHHHhHHHHHHHHhC
Q 044240 188 DTLKEKMSAVVSALSHCQKKIGSGYLSAFP-----S-RYFDHLEAL---KPVW-----APY-YTIHKILAGLLDQYKYAD 252 (859)
Q Consensus 188 ~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~-----~-~~~~r~~~l---~~~w-----~py-y~~HkI~aGLld~y~~tG 252 (859)
+.+++.++.-.|.|++||. .+|.+-.-. . ..|.+-|+. +..+ .|= -..-.+-++|-.++..-.
T Consensus 117 ~~~lde~kw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~~~AAAlA~as~vfk 194 (489)
T PLN00119 117 GNALAALKWATDYLIKAHP--QPNVLYGQVGDGNSDHACWMRPEDMTTPRTSYRIDAQHPGSDLAGETAAAMAAASIAFA 194 (489)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEeccCCCcccccCChhhCCCcCceeecCCCCCchHHHHHHHHHHHHHHHHcc
Confidence 4678888889999999997 444332110 0 011211211 1110 010 011223334434455433
Q ss_pred C------hhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCCCCchhHHHHHHHHhcCCHHHHHHHhhc
Q 044240 253 N------AHALKMATRMVEYFYNRVQKVIRKYSVARHWQYLNEEPGGMNDVLYRLFSITKDPRHLFLAHLF 317 (859)
Q Consensus 253 ~------~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmneaL~~LY~~TGd~ryL~LA~~f 317 (859)
+ ++.|+.|+++-+|..+.-+..-...+.....+.-..-.-.+..+-+|||+.|||+.|++.++..
T Consensus 195 ~~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~~~~~~~g~Y~ss~~~DEl~WAAawLY~aTgd~~Yl~~~~~~ 265 (489)
T PLN00119 195 PSDPAYASILIGHAKDLFEFAKAHPGLYQNSIPNAGGFYASSGYEDELLWAAAWLHRATNDQTYLDYLTQA 265 (489)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCCCCCCchhhHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3 4678888888888865311100000000000000000001457888999999999999987654
No 62
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=55.39 E-value=23 Score=39.35 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=58.5
Q ss_pred hhhHHHhcCchHHHHHHHHHHHHhhccCeEeecCCCCCCCCCCCCcccccCCcccccchhhHHHHHHHHHhhcccCCc--
Q 044240 348 TQRRYELTGELLHKEMGTFFMDLVNSSHTYATGGTSVGEFWRDPKRLATTLGTNNEESCTTYNMLKVSRNLFRWTKES-- 425 (859)
Q Consensus 348 ~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~y~TGG~g~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~-- 425 (859)
.++.|..|+|++|++++.+..+-+.+ --|..||.-. +|-......+.+ +---=+.++.|.+.+....-.++-
T Consensus 48 La~~y~~t~d~~y~~A~~kgl~ylL~-aQypnGGWPQ--~yP~~~~Y~~~I---TfNDdam~~vl~lL~~v~~~~~~~~~ 121 (289)
T PF09492_consen 48 LARVYQATKDPRYREAFLKGLDYLLK-AQYPNGGWPQ--FYPLRGGYHDHI---TFNDDAMVNVLELLRDVAEGKGDFAF 121 (289)
T ss_dssp HHHHHHHCG-HHHHHHHHHHHHHHHH-HS-TTS--BS--ECS--SGGGGSE---E-GGGHHHHHHHHHHHHHCT-TTSTT
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHH-hhCCCCCCCc--cCCCCCCCCCce---EEccHHHHHHHHHHHHHHhhcCCccc
Confidence 77889999999999999999999984 5588888765 221111111111 111225677888888888888887
Q ss_pred -------hHHHHHHHHHhhhhhcccC
Q 044240 426 -------AYADFYERALINGVLSIQR 444 (859)
Q Consensus 426 -------~YaD~~ERalyN~vLa~q~ 444 (859)
++.+.++|.+ ..||..|-
T Consensus 122 v~~~~~~r~~~A~~kgi-~ciL~tQi 146 (289)
T PF09492_consen 122 VDESLRARARAAVDKGI-DCILKTQI 146 (289)
T ss_dssp S-HHHHHHHHHHHHHHH-HHHHHHS-
T ss_pred cCHHHHHHHHHHHHHHH-HHHHHHHc
Confidence 8888888887 67777765
No 63
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=55.00 E-value=15 Score=40.83 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHhhcccCCchHHHHHHHHHhhhhhcccCCCCCCcEEEecCCCC
Q 044240 407 TTYNMLKVSRNLFRWTKESAYADFYERALINGVLSIQRGTSPGVMIYMLPLGP 459 (859)
Q Consensus 407 as~nmlkl~~~Lf~~tgd~~YaD~~ERalyN~vLa~q~~~~~g~~~Y~~PL~~ 459 (859)
+|+.-|++.-++++.++|.+|-|.++|++ |-||+.|++ ++ .+-.+-|+..
T Consensus 45 aT~~e~~fLa~~y~~t~d~~y~~A~~rgl-d~LL~aQyp-nG-GWPQf~p~~~ 94 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQEKNAKYRDAARKGI-EYLLKAQYP-NG-GWPQFYPLKG 94 (290)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHH-HHHHhhhCC-CC-CcCcccCCcC
Confidence 45666777778899999999999999999 999999997 54 4444447654
No 64
>PLN02420 endoglucanase
Probab=53.49 E-value=1.2e+02 Score=36.75 Aligned_cols=125 Identities=11% Similarity=0.004 Sum_probs=62.1
Q ss_pred ChhHHHHHHHHHHHHHHHhhhCCCcccccc-----CC-chhhhcccc---CCCcc-----cchh-hhHHHhHHHHHHHHh
Q 044240 187 NDTLKEKMSAVVSALSHCQKKIGSGYLSAF-----PS-RYFDHLEAL---KPVWA-----PYYT-IHKILAGLLDQYKYA 251 (859)
Q Consensus 187 D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~-----~~-~~~~r~~~l---~~~w~-----pyy~-~HkI~aGLld~y~~t 251 (859)
-+.+++.++.-+|.|++||. .++-+-.- .. ..|.+-|+. +.... |--. .-..-++|-.+++.-
T Consensus 126 ~~d~Ldeikw~lD~llk~~~--~~~~~~~qvGdg~~DH~~w~~Pe~~~~~R~~~~i~~~~pgsd~aa~~AAALA~AS~vf 203 (525)
T PLN02420 126 LSHALEAIKWGTDYFIKAHT--SPNVLWAEVGDGDTDHYCWQRPEDMTTSRRAFKIDENNPGSDIAGETAAAMAAASIVF 203 (525)
T ss_pred cHHHHHHHHHHHHHHHHhCc--CCCceEEeeCCCCcccccccChhhccccCceEEecCCCCccHHHHHHHHHHHHHHHhc
Confidence 47889999999999999997 33221100 00 001111111 11100 1001 111222332444433
Q ss_pred CC------hhHHHHHHHHHHHHHHHhhhhhhcccccccccc-----cCCCCCchhHHHHHHHHhcCCHHHHHHHhhc
Q 044240 252 DN------AHALKMATRMVEYFYNRVQKVIRKYSVARHWQY-----LNEEPGGMNDVLYRLFSITKDPRHLFLAHLF 317 (859)
Q Consensus 252 G~------~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~-----l~~E~GGmneaL~~LY~~TGd~ryL~LA~~f 317 (859)
.+ ++.|+.|+++-+|..+.-+.. ..-........ ...| +..+-+|||+.|||+.||+.+...
T Consensus 204 k~~D~~YA~~~L~~Ak~ly~fA~~~~g~y-~~~~~~~~g~Y~s~s~y~DE---l~WAAawLY~ATgd~~Yl~~a~~~ 276 (525)
T PLN02420 204 RSTNPHYSHLLLHHAQQLFEFGDKYRGKY-DESLKVVKSYYASVSGYMDE---LLWGATWLYRATDNEHYMSYVVDM 276 (525)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhcCCcc-CCCCcccCCCCCCcCcccHH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 32 367888888888876421110 00000000000 1122 457888999999999999988654
No 65
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=51.54 E-value=68 Score=38.49 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=26.8
Q ss_pred HhcCChhHHHHHHHHHHHHHHHhhhCCCcccccc
Q 044240 183 ASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSAF 216 (859)
Q Consensus 183 a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~ 216 (859)
..|+|+.+.+|+..|.+.|.+.-. ++|-...|
T Consensus 344 ~ltg~P~~~ekv~~IRk~l~k~ek--P~GLypnY 375 (625)
T KOG2204|consen 344 KLTGNPTFAEKVVKIRKVLNKSEK--PHGLYPNY 375 (625)
T ss_pred hccCCchHHHHHHHHHHHHHhhcC--CCCCCccc
Confidence 468999999999999999999988 87754444
No 66
>PLN02171 endoglucanase
Probab=51.42 E-value=2e+02 Score=35.55 Aligned_cols=125 Identities=10% Similarity=0.033 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhCCCccccccC-C-----chhhhcccc---CCCc-----ccch-hhhHHHhHHHHHHHHhC
Q 044240 188 DTLKEKMSAVVSALSHCQKKIGSGYLSAFP-S-----RYFDHLEAL---KPVW-----APYY-TIHKILAGLLDQYKYAD 252 (859)
Q Consensus 188 ~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~-~-----~~~~r~~~l---~~~w-----~pyy-~~HkI~aGLld~y~~tG 252 (859)
+.+++.++.-.|.|++||. ++|-+-.-- . ..+.+-|+. +... .|-- ..-..-|+|-.+++.-.
T Consensus 116 ~~~Ldeikw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaaS~vfk 193 (629)
T PLN02171 116 GHAMDAVKWGTDYFIKAHP--EPNVLYGEVGDGDTDHYCWQRPEDMTTDRQAYRIDPQNPGSDLAGETAAAMAAASIVFR 193 (629)
T ss_pred HHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCccccCcCChhHccccceeEEecCCCCchHHHHHHHHHHHHHHHhcc
Confidence 4677888889999999997 433221100 0 011111111 1110 0100 01112234434455433
Q ss_pred C------hhHHHHHHHHHHHHHHHhhhhhhccccc-ccccc---cCCCCCchhHHHHHHHHhcCCHHHHHHHhhc
Q 044240 253 N------AHALKMATRMVEYFYNRVQKVIRKYSVA-RHWQY---LNEEPGGMNDVLYRLFSITKDPRHLFLAHLF 317 (859)
Q Consensus 253 ~------~~aL~va~~~ad~~~~~~~~~~~~~~~~-~~~~~---l~~E~GGmneaL~~LY~~TGd~ryL~LA~~f 317 (859)
+ ++.|+-|+++-+|..+.-+..-...+.. ..... ...| +..+-+|||+.|||+.||+.++..
T Consensus 194 ~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~Y~s~s~y~DE---l~WAAawLy~ATgd~~Yl~~~~~~ 265 (629)
T PLN02171 194 RSNPGYANELLTHAKQLFDFADKYRGKYDSSITVAQKYYRSVSGYGDE---LLWAAAWLYQATNNQYYLDYLGNN 265 (629)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhCCCcccCCCcccCCccCCCCCccHH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3 4678888888888865311100000000 01100 0112 446888999999999999987654
No 67
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=50.05 E-value=1.3e+02 Score=35.75 Aligned_cols=123 Identities=17% Similarity=0.179 Sum_probs=64.1
Q ss_pred HhcCChhHHHHHHHHHHHHHHHhhhCCCcccccc-CCchhhhccccCCCcccchhhhHHHhHHHHHHHHhCChhHH----
Q 044240 183 ASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSAF-PSRYFDHLEALKPVWAPYYTIHKILAGLLDQYKYADNAHAL---- 257 (859)
Q Consensus 183 a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~-~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~y~~tG~~~aL---- 257 (859)
+..+|.++ +.+.++.+.+.|. ++|.+... |... ....--|-|..+-|+ .+.++|+++||.+.+
T Consensus 163 ~~~~~~~l---~~~~l~~~~~~q~--~~G~~p~~~P~~~------~~~~~~~~w~l~~i~-~~~~~y~~tGD~~~l~~~~ 230 (509)
T PF05592_consen 163 YSFGDAAL---YRKWLRDFADSQR--PDGLLPSVAPSYG------GGGFGIPDWSLAWII-IPWDYYLYTGDREFLEEYY 230 (509)
T ss_dssp CCT--HHH---HHHHHHHHHGGTT--TSTT-SSBSS---------SSGGGBHHHHHHHHH-HHHHHHHHHT-HHHHHHHH
T ss_pred HhCCcHHH---HHHHHHHHHHhhc--ccCCceEEecccC------CCCCCCccHHHHHHH-HHHHHHHHhCCHHHHHHHH
Confidence 34556554 6667888899999 89987653 3321 111122444555454 566999999997644
Q ss_pred HHHHHHHHHHHHHhhhh---hhccccccccc----ccCCCCCc----------hhHHHHHHHHhcCCH----HHHHHHhh
Q 044240 258 KMATRMVEYFYNRVQKV---IRKYSVARHWQ----YLNEEPGG----------MNDVLYRLFSITKDP----RHLFLAHL 316 (859)
Q Consensus 258 ~va~~~ad~~~~~~~~~---~~~~~~~~~~~----~l~~E~GG----------mneaL~~LY~~TGd~----ryL~LA~~ 316 (859)
..++++.||+.+...+. +....... |. ......++ ....+.+|.++.|++ +|.++|+.
T Consensus 231 ~~~~~~l~~~~~~~~~~~~~~~~~~~~D-W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~ 309 (509)
T PF05592_consen 231 PAMKRYLDYLERRVDDGLDGLPGWGFGD-WLAPGNDGDGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAER 309 (509)
T ss_dssp HHHHHHHHHHHTTB-TSSB-CCSB--S--SS----TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccccCCCCCceee-cCCccCcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677777776544330 01111111 21 01111111 124677888899984 78888887
Q ss_pred cc
Q 044240 317 FA 318 (859)
Q Consensus 317 f~ 318 (859)
+.
T Consensus 310 lk 311 (509)
T PF05592_consen 310 LK 311 (509)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 68
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=44.16 E-value=1.2e+02 Score=33.77 Aligned_cols=90 Identities=16% Similarity=0.136 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCccccc-cCCchhhhccccCCCcccch---hhhHHHhHHHHH
Q 044240 172 GHYLSASALMWASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSA-FPSRYFDHLEALKPVWAPYY---TIHKILAGLLDQ 247 (859)
Q Consensus 172 Gh~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a-~~~~~~~r~~~l~~~w~pyy---~~HkI~aGLld~ 247 (859)
--=|.=++.+|..++|+..++.+.+-|+.|++.|- ++|=... +|..- .+ ..+-++. ..| +|.-|.+.
T Consensus 47 ~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQy--pnGGWPQf~p~~~--~Y----~~~ITfND~am~~-vl~lL~~i 117 (290)
T TIGR02474 47 VTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQY--PNGGWPQFYPLKG--GY----SDAITYNDNAMVN-VLTLLDDI 117 (290)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhC--CCCCcCcccCCcC--Cc----ccccccCcHHHHH-HHHHHHHH
Confidence 33455678889999999999999999999999999 5542222 22110 00 0001111 122 34445455
Q ss_pred HHHhC---------ChhHHHHHHHHHHHHHHH
Q 044240 248 YKYAD---------NAHALKMATRMVEYFYNR 270 (859)
Q Consensus 248 y~~tG---------~~~aL~va~~~ad~~~~~ 270 (859)
+..-+ .+++...+.|-.+||.+.
T Consensus 118 ~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILkt 149 (290)
T TIGR02474 118 ANGKDPFDVFPDSTRTRAKTAVTKGIECILKT 149 (290)
T ss_pred HhccCCcccccHHHHHHHHHHHHHHHHHHHHh
Confidence 54333 268888899999998753
No 69
>PHA02651 IL-1 receptor antagonist; Provisional
Probab=43.55 E-value=29 Score=35.37 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=21.8
Q ss_pred CeEEEeecCCcceEEEEee-cC-ceEEEEe
Q 044240 773 NTVSLESKSHKGCYVYSLK-SG-KSMTLRC 800 (859)
Q Consensus 773 ~~vsles~~~pg~~~~~~~-~g-~~~~l~~ 800 (859)
.+.+|||+.+||||+.... .+ ..|.|--
T Consensus 115 ~tstFESaafPgWfIsTs~~e~~~PV~Lt~ 144 (165)
T PHA02651 115 HTSTFESVAFPGWFLCTSSGDGIEPVGLTY 144 (165)
T ss_pred CceEEEecCCCCcEEEeccccCCcceEeec
Confidence 4999999999999999733 22 5677763
No 70
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=42.93 E-value=1.1e+02 Score=34.06 Aligned_cols=92 Identities=17% Similarity=0.227 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCccccccCCc--hhhhccccCCCcccchhhhHHHhHHHHHHH
Q 044240 172 GHYLSASALMWASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPSR--YFDHLEALKPVWAPYYTIHKILAGLLDQYK 249 (859)
Q Consensus 172 Gh~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~--~~~r~~~l~~~w~pyy~~HkI~aGLld~y~ 249 (859)
-.=|.=||.+|..|+|+.+++-+.+-|+.|+++|=.+ -||=.-||.. ..+.++ .++. +. .+ +|.=|.+.+.
T Consensus 42 ~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypn-GGWPQ~yP~~~~Y~~~IT-fNDd-am---~~-vl~lL~~v~~ 114 (289)
T PF09492_consen 42 TTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPN-GGWPQFYPLRGGYHDHIT-FNDD-AM---VN-VLELLRDVAE 114 (289)
T ss_dssp HHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TT-S--BSECS--SGGGGSEE--GGG-HH---HH-HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCC-CCCCccCCCCCCCCCceE-EccH-HH---HH-HHHHHHHHHh
Confidence 4456678999999999999999999999999999942 2454444421 111110 1111 11 11 3334446666
Q ss_pred HhCCh---------hHHHHHHHHHHHHHHH
Q 044240 250 YADNA---------HALKMATRMVEYFYNR 270 (859)
Q Consensus 250 ~tG~~---------~aL~va~~~ad~~~~~ 270 (859)
..++- ++.+.+.|-.|+|.+.
T Consensus 115 ~~~~~~~v~~~~~~r~~~A~~kgi~ciL~t 144 (289)
T PF09492_consen 115 GKGDFAFVDESLRARARAAVDKGIDCILKT 144 (289)
T ss_dssp T-TTSTTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666 8999999999999875
No 71
>PLN03009 cellulase
Probab=42.25 E-value=2e+02 Score=34.59 Aligned_cols=124 Identities=12% Similarity=0.001 Sum_probs=63.0
Q ss_pred ChhHHHHHHHHHHHHHHHhhhCCCcccccc-CC-----chhhhcccc---CCCcc-----cchh-hhHHHhHHHHHHHHh
Q 044240 187 NDTLKEKMSAVVSALSHCQKKIGSGYLSAF-PS-----RYFDHLEAL---KPVWA-----PYYT-IHKILAGLLDQYKYA 251 (859)
Q Consensus 187 D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~-~~-----~~~~r~~~l---~~~w~-----pyy~-~HkI~aGLld~y~~t 251 (859)
-+.+++.++.-+|.|.+||. .+|-+-.- .. ..+.+-|+. +.... |--. .-.+-+.|-.+++.-
T Consensus 112 ~~diLdeikw~~D~llkm~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~is~~~p~sd~a~~~AAalA~as~vf 189 (495)
T PLN03009 112 LRNSLVAIRWATDYLLKTVS--QPNRIFVQVGDPIADHNCWERPEDMDTPRTVYAVNAPNPASDVAGETAAALAASSMAF 189 (495)
T ss_pred cHHHHHHHHHHHHHHHHccc--CcCeEEEEeCCCCCCcccCcChhhcCCCCeEEEecCCCCccHHHHHHHHHHHHHHHhc
Confidence 46788888889999999987 44332210 00 001111111 11110 1000 123333443455544
Q ss_pred CC------hhHHHHHHHHHHHHHHHhhhhhhcccccc----ccc-ccCCCCC---chhHHHHHHHHhcCCHHHHHHHhh
Q 044240 252 DN------AHALKMATRMVEYFYNRVQKVIRKYSVAR----HWQ-YLNEEPG---GMNDVLYRLFSITKDPRHLFLAHL 316 (859)
Q Consensus 252 G~------~~aL~va~~~ad~~~~~~~~~~~~~~~~~----~~~-~l~~E~G---GmneaL~~LY~~TGd~ryL~LA~~ 316 (859)
.+ ++.|+-|+++-+|..+.-+. +.... -.. ....+.| -+..+-+|||+.|||++||+-++.
T Consensus 190 k~~D~~YA~~ll~~Ak~ly~~a~~~~g~----y~~~~~~~~g~~~~Y~~~s~~~DE~~WAAawLy~aTgd~~Yl~~~~~ 264 (495)
T PLN03009 190 RSSDPGYSETLLRNAIKTFQFADMYRGA----YSDNDDIKDGVCPFYCDFDGYQDELLWGAAWLRRASGDDSYLNYIEN 264 (495)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHcCCC----ccCCccccCccccCcCCcccccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 32 36788888888888653211 11100 000 0001111 144688899999999999997754
No 72
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=40.45 E-value=56 Score=30.76 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=27.8
Q ss_pred CcEEEECCeecccCCCCCEEEEEeecCCCCEEEEEecceeEEEecc
Q 044240 567 GAKAMLNGQSLALPSPGNSLSVTKTWSSDDKLTIHLPLSLWTEAIK 612 (859)
Q Consensus 567 ~~~v~VNG~~~~~~~~ggY~~I~R~W~~GD~I~L~LPm~lr~~~~~ 612 (859)
+=+|.|||+.++... .-+.||+|+|.|.-......+-
T Consensus 33 ~GrV~vNG~~aKpS~---------~VK~GD~l~i~~~~~~~~v~Vl 69 (100)
T COG1188 33 GGRVKVNGQRAKPSK---------EVKVGDILTIRFGNKEFTVKVL 69 (100)
T ss_pred CCeEEECCEEccccc---------ccCCCCEEEEEeCCcEEEEEEE
Confidence 458999999886422 3378999999998877776543
No 73
>cd00100 IL1 Interleukin-1 homologes; Cytokines with various biological functions. Interleukin 1 alpha and beta are also known as hematopoietin and catabolin. This family also contains interleukin-1 receptor antagonists (inhibitors).
Probab=35.61 E-value=36 Score=34.06 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=21.1
Q ss_pred CeEEEeecCCcceEEEE-eecCceEEEE
Q 044240 773 NTVSLESKSHKGCYVYS-LKSGKSMTLR 799 (859)
Q Consensus 773 ~~vsles~~~pg~~~~~-~~~g~~~~l~ 799 (859)
.+.+|||+.+||||+.. ......|.|.
T Consensus 103 ~~~~FeSaa~PgWfIsTs~~~~~PV~l~ 130 (144)
T cd00100 103 NKNYFESAAFPNWFIATKQEEDKPVFLA 130 (144)
T ss_pred CceEEEEccCCCcEEEecccCCeEEEee
Confidence 38999999999999997 3334466666
No 74
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=34.90 E-value=3.1e+02 Score=30.37 Aligned_cols=91 Identities=20% Similarity=0.175 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhccchhhhHHHHHhcCCCCCCCCCCCCcCCCCCc---cccchhhHHHHHHHHHHhc--CChhHHHHHH
Q 044240 121 WRAQQTNLEYLLMLDVDRLVWSFRKTAGLRTKGNAYGGWEDPTSQL---RGHFVGHYLSASALMWAST--HNDTLKEKMS 195 (859)
Q Consensus 121 ~~~~~~~~~yll~~d~drLL~nFr~~AGl~~~g~~~gGWe~~dsdl---~GH~~Gh~LsA~a~~~a~t--~D~~L~~k~d 195 (859)
.+..+.-++||+.......-..+ ++. -+..+-|||-+..... ..-.++.-+.+++.+.... ++....+.++
T Consensus 45 ~~~~~ka~~~l~~~q~~~~~~~~---~~~-~~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~ 120 (348)
T cd02889 45 DPALKKALEWLLKSQIRDNPDDW---KVK-YRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLY 120 (348)
T ss_pred CHHHHHHHHHHHhcCCCCCCCch---hhc-CCCCCCCcCcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHH
Confidence 35667777888865421100000 000 0113446776542111 0013456666666554443 2467788999
Q ss_pred HHHHHHHHHhhhCCCccccccC
Q 044240 196 AVVSALSHCQKKIGSGYLSAFP 217 (859)
Q Consensus 196 ~~Vd~l~~~Q~~~~dGYL~a~~ 217 (859)
..++.|.++|+ +||.+..+.
T Consensus 121 ~a~~~L~~~Q~--~dG~f~~~~ 140 (348)
T cd02889 121 DAVDWLLSMQN--SNGGFAAFE 140 (348)
T ss_pred HHHHHHHHhcc--CCCCEeeec
Confidence 99999999999 899877653
No 75
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=33.75 E-value=1.3e+02 Score=33.19 Aligned_cols=188 Identities=14% Similarity=0.021 Sum_probs=98.4
Q ss_pred ccCCCcccchhhhHHHhHHHHHHHHhCChhHHHHHHHHHHHHHHH-hhhh-hhcccccccccccCCCCCchhHHHHHHHH
Q 044240 226 ALKPVWAPYYTIHKILAGLLDQYKYADNAHALKMATRMVEYFYNR-VQKV-IRKYSVARHWQYLNEEPGGMNDVLYRLFS 303 (859)
Q Consensus 226 ~l~~~w~pyy~~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~~-~~~~-~~~~~~~~~~~~l~~E~GGmneaL~~LY~ 303 (859)
.+...|.-|+-.|++.+ ++|+|..+..+.=++++.+.......| ++.. ++.+-++.-| ...++.++|.
T Consensus 38 ~lf~~whYWWqAHlldc-lvDA~lR~~~~Arr~ri~~T~r~~~vRN~G~l~shdyYDDmaW---------lALAl~Ra~K 107 (377)
T COG4833 38 RLFGSWHYWWQAHLLDC-LVDAQLRDPQPARRARINRTVRSHRVRNFGWLNSHDYYDDMAW---------LALALERADK 107 (377)
T ss_pred HhhhhHHHHHHHHHHHH-HHHHHhcCCcHhHHHHHHHHHhhhhccccccccchhhhhhHHH---------HHHHHHhhhc
Confidence 45667777788898864 559999988888788888776665432 1211 1111111112 2378999999
Q ss_pred hcCC---HHHHHHHhhcccccccccccccCCCCC---CC-ccc--CCcceeeehhhHHHhcCchHHHHHHHH----HHHH
Q 044240 304 ITKD---PRHLFLAHLFAKPCFLGLLAVQSNDIS---DF-HVN--THIPLVIGTQRRYELTGELLHKEMGTF----FMDL 370 (859)
Q Consensus 304 ~TGd---~ryL~LA~~f~~~~~~~~la~~~d~l~---~~-Han--thiP~~~G~a~~Y~~TGD~~y~~aa~~----fwd~ 370 (859)
.||- +..+.+-+.|+..+. +.+.. .++ +. +.| ...|.++=+++.|..- .++++-|.. ..++
T Consensus 108 v~gvr~~~alp~l~~~~v~Gw~-D~~gG---g~pWR~q~~f~N~P~NgPa~I~~ar~~~~~--~krL~~AMK~~dWi~~~ 181 (377)
T COG4833 108 VAGVRRRRALPKLTNQFVEGWV-DEDGG---GIPWRKQDQFFNAPANGPAGIFLARYPDQY--GKRLKRAMKMADWIDRT 181 (377)
T ss_pred ccceeccccchhHHHhhhhccc-cccCC---cccccccceeecCCCCCcceEEEeechHHH--HHHHHHHHHHHHHHHhh
Confidence 9982 334445555554321 11110 111 11 122 3455555566665433 345444443 4445
Q ss_pred hhccCeEeecCCCCCCCCCCCCcccccCCcccccchhhHHHHHHHHHhhc-ccCCchHHHHHHHHH
Q 044240 371 VNSSHTYATGGTSVGEFWRDPKRLATTLGTNNEESCTTYNMLKVSRNLFR-WTKESAYADFYERAL 435 (859)
Q Consensus 371 V~~~h~y~TGG~g~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~-~tgd~~YaD~~ERal 435 (859)
+++..+++--|+-..|+=...++ . ...||.-- .++ |...-.|.+ .+.+++|.|.+-++.
T Consensus 182 Lid~DGlV~DGi~~ledGt~lvr--~--~~tYcQGV-~IG-le~~L~Lr~~~a~~A~Y~a~~h~~v 241 (377)
T COG4833 182 LIDPDGLVFDGIKALEDGTSLVR--A--QYTYCQGV-VIG-LETELALRTGPAARARYCARVHRLV 241 (377)
T ss_pred ccCCCcchhhhhhhhccCchhhe--e--ecccccee-Eee-chhhhhhhcCchHHHHHHHHHHHHH
Confidence 55666777777766665322221 0 01122211 122 445555555 667788888775544
No 76
>PF00340 IL1: Interleukin-1 / 18; InterPro: IPR000975 Interleukin-1 alpha and interleukin-1 beta (IL-1 alpha and IL-1 beta) are cytokines that participate in the regulation of immune responses, inflammatory reactions, and hematopoiesis []. Two types of IL-1 receptor, each with three extracellular immunoglobulin (Ig)-like domains, limited sequence similarity (28%) and different pharmacological characteristics have been cloned from mouse and human cell lines: these have been termed type I and type II receptors []. The receptors both exist in transmembrane (TM) and soluble forms: the soluble IL-1 receptor is thought to be post-translationally derived from cleavage of the extracellular portion of the membrane receptors. Both IL-1 receptors appear to be well conserved in evolution, and map to the same chromosomal location []. The receptors can both bind all three forms of IL-1 (IL-1 alpha, IL-1 beta and IL-1RA). The crystal structures of IL1A and IL1B [] have been solved, showing them to share the same 12-stranded beta-sheet structure as both the heparin binding growth factors and the Kunitz-type soybean trypsin inhibitors []. The beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel. Several regions, especially the loop between strands 4 and 5, have been implicated in receptor binding. The Vaccinia virus genes B15R and B18R each encode proteins with N-terminal hydrophobic sequences, possible sites for attachment of N-linked carbohydrate and a short C-terminal hydrophobic domain []. These properties are consistent with the mature proteins being either virion, cell surface or secretory glycoproteins. Protein sequence comparisons reveal that the gene products are related to each other (20% identity) and to the Ig superfamily. The highest degree of similarity is to the human and murine interleukin-1 receptors, although both proteins are related to a wide range of Ig superfamily members, including the interleukin-6 receptor. A novel method for virus immune evasion has been proposed in which the product of one or both of these proteins may bind interleukin-1 and/or interleukin-6, preventing these cytokines reaching their natural receptors []. A similar gene product from Cowpox virus (CPV) has also been shown to specifically bind murine IL-1 beta []. This entry represents Interleukin-1. ; GO: 0005615 extracellular space; PDB: 1J0S_A 3F62_B 2VXT_I 1MD6_A 2KKI_A 2L5X_D 2WRY_A 3NJ5_A 8I1B_A 2MIB_A ....
Probab=33.54 E-value=53 Score=31.74 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=20.8
Q ss_pred eEEEeecCCcceEEEE-eecCceEEEEe
Q 044240 774 TVSLESKSHKGCYVYS-LKSGKSMTLRC 800 (859)
Q Consensus 774 ~vsles~~~pg~~~~~-~~~g~~~~l~~ 800 (859)
+-+|||+.+|||||.. ...+..|.|..
T Consensus 80 ~~~FESaa~PgwFIaT~~~~~~pv~l~~ 107 (120)
T PF00340_consen 80 TSTFESAAYPGWFIATSPEDNQPVELTK 107 (120)
T ss_dssp EEEEEESSSTTEEEEBESSSTEEEEEES
T ss_pred ceEEEEccCCCeEEEecccCCceEEEEe
Confidence 5559999999999987 44556666765
No 77
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=33.08 E-value=1.9e+02 Score=35.01 Aligned_cols=126 Identities=19% Similarity=0.312 Sum_probs=68.2
Q ss_pred chhhHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCccccccCCchhhhcc---ccCCCcc--------cchhhh
Q 044240 170 FVGHYLSASALMWASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPSRYFDHLE---ALKPVWA--------PYYTIH 238 (859)
Q Consensus 170 ~~Gh~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~~~r~~---~l~~~w~--------pyy~~H 238 (859)
|+|-+|+ +|+.++|+-++.|+.++-|.|+.+-. .++|= |...-+ .. .-++.|+ -+=+.|
T Consensus 267 F~GGlls----ay~lsge~~f~~kA~~igdkLLpAfn-tptGI----p~~~vn-~ksG~~~n~~wasgg~SILaE~gtlh 336 (625)
T KOG2204|consen 267 FVGGLLS----AYALSGEEMFLEKAPEIGDKLLPAFN-TPTGI----PKALVN-NKSGDADNYGWASGGSSILAEFGTLH 336 (625)
T ss_pred eehhhHH----HhhhcccHHHHHhhHHHHHHhhhccc-CCCCC----chhhhc-cccCccCCcccccCcchHhhhcCcee
Confidence 4554554 56679999999999999999887654 13332 110000 00 0122332 233567
Q ss_pred HHHhHHHHHHHHhCChhHHHHHHHHHHHHHHHhhh--hhhcc--cccccccccCCCCCchhHHHH----HHHHhcCCH
Q 044240 239 KILAGLLDQYKYADNAHALKMATRMVEYFYNRVQK--VIRKY--SVARHWQYLNEEPGGMNDVLY----RLFSITKDP 308 (859)
Q Consensus 239 kI~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~--~~~~~--~~~~~~~~l~~E~GGmneaL~----~LY~~TGd~ 308 (859)
+-+.-| =..+|++..-+-+.+.-+-+.+...+ +.+.+ +...-|...+.+.|+|-+++| +++-.|++.
T Consensus 337 lef~~L---S~ltg~P~~~ekv~~IRk~l~k~ekP~GLypnYinP~sg~wgq~~tslg~lgDSfyeyllK~wl~s~kT 411 (625)
T KOG2204|consen 337 LEFSYL---SKLTGNPTFAEKVVKIRKVLNKSEKPHGLYPNYINPSSGEWGQHHTSLGALGDSFYEYLLKAWLQSDKT 411 (625)
T ss_pred eehHHh---hhccCCchHHHHHHHHHHHHHhhcCCCCCCcccccCCCCchhhHHhHHhhhhhhHHHHHHHHHhhcCCc
Confidence 666555 25789988777777766666554332 11111 111123334455676665554 556666653
No 78
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=32.90 E-value=1e+02 Score=28.05 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=35.4
Q ss_pred HHHH--HHHHHHHhhhCCCccccccCCchhhhccccCCCcccchhhhHHHhHHHHHHHHhCChhHHHHHHHHHHHHHH
Q 044240 194 MSAV--VSALSHCQKKIGSGYLSAFPSRYFDHLEALKPVWAPYYTIHKILAGLLDQYKYADNAHALKMATRMVEYFYN 269 (859)
Q Consensus 194 ~d~~--Vd~l~~~Q~~~~dGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~ 269 (859)
.+++ ++.|.++|. +||-++..+... ..+. ++ ...+| ......+.+...+.+.+..+|+.+
T Consensus 42 ~~~~~~~~~L~~~q~--~dGg~~~~~~~~------~~~~---~~----t~~~l-~~l~~~~~~~~~~~~~~a~~~l~~ 103 (113)
T PF13249_consen 42 RDRAAAVEWLLSQQN--PDGGWGSNPDGG------PPDV---YT----TYVAL-AALELLGRPDDEEAVRKAVDWLLS 103 (113)
T ss_dssp HHHHHHHHHHHHHB---TTSGBBSSTTTT-------BSH---HH----HHHHH-HHHHHHT-GGCHTTHCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--CCCCccCCCCCC------CccH---HH----HHHHH-HHHHHcCCCcccHHHHHHHHHHHH
Confidence 5556 999999999 998888765311 0011 11 22233 233455555556788888999875
No 79
>PF02011 Glyco_hydro_48: Glycosyl hydrolase family 48; InterPro: IPR000556 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 48 GH48 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). The largest cellulase gene sequenced to date is one of the cellulases (celA) from the genome of the thermophilic anaerobic bacterium Caldocellum saccharolyticum. The celA gene product is a polypeptide of 1751 amino acids; this has a multidomain structure comprising two catalytic domains and two cellulose-binding domains, linked by Pro-Thr-rich regions. The N-terminal domain encodes an endoglucanase activity on carboxymethylcellulose, consistent with its similarity to several endo-1, 4-beta-D-glucanase sequences. The C-terminal domain shows similarity to a cellulase from Clostridium thermocellum (CelS), which acts synergistically with a second component to hydrolyse crystalline cellulose [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1FAE_A 1FBO_A 1FBW_A 1FCE_A 1F9D_A 1F9O_A 1G9G_A 1G9J_A 2QNO_A 1L1Y_E ....
Probab=32.53 E-value=1e+02 Score=37.20 Aligned_cols=95 Identities=16% Similarity=0.142 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCccccccCCc-----hhhhccc----cCCCccc--chhhh----H
Q 044240 175 LSASALMWASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPSR-----YFDHLEA----LKPVWAP--YYTIH----K 239 (859)
Q Consensus 175 LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~-----~~~r~~~----l~~~w~p--yy~~H----k 239 (859)
|+=+|..|..|+|+..++.+|++|..++..-.-.+||=+. .|.. +-+.|.. ..+.|+- -|+-. -
T Consensus 413 m~R~AeyYy~tGd~~ak~ildKWv~W~~~~~~~~~dG~f~-IPs~L~WSGqPDtW~~s~t~N~nLHV~V~~yg~DvGva~ 491 (619)
T PF02011_consen 413 MERVAEYYYETGDARAKAILDKWVAWALSNTTVNSDGTFE-IPSTLEWSGQPDTWTGSPTGNPNLHVTVTDYGQDVGVAG 491 (619)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHTT-EE-TTS-EE-EEEEEEEES-----TTS----TTEEEEEEEEE--HHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhceeCCCCcEe-cCCCCcccCCCCCccCCCCCCCceEEEEecCCCchhHHH
Confidence 6778999999999999999999999998876655566222 1221 1122211 1122210 01000 0
Q ss_pred HHhHHHHHHH-HhCChhHHHHHHHHHHHHHHH
Q 044240 240 ILAGLLDQYK-YADNAHALKMATRMVEYFYNR 270 (859)
Q Consensus 240 I~aGLld~y~-~tG~~~aL~va~~~ad~~~~~ 270 (859)
-++..|.+|. .+|+++|+++|+++.|-+.+.
T Consensus 492 S~AktL~yYAA~sg~~~Ak~~Ak~LLD~iW~~ 523 (619)
T PF02011_consen 492 SYAKTLTYYAAKSGDQEAKDTAKQLLDAIWNN 523 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHHHh
Confidence 2344456666 579999999999999999763
No 80
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=32.29 E-value=1.5e+02 Score=37.55 Aligned_cols=58 Identities=22% Similarity=0.362 Sum_probs=42.4
Q ss_pred EEEEEEeeCCCCeeeEEEEeecCCCCCCCcEEEECCeecccC-CCCCEEEEEeecCCCCEEEEEe
Q 044240 539 RITLTFSPKGAGKASTLNLRIPSWSNSNGAKAMLNGQSLALP-SPGNSLSVTKTWSSDDKLTIHL 602 (859)
Q Consensus 539 ~V~ltv~~~~~~~~ftL~LRIP~Wa~~~~~~v~VNG~~~~~~-~~ggY~~I~R~W~~GD~I~L~L 602 (859)
+++.+|+.+ .+.-.|.+-||-- + |.+++|||++++.. ..++|+-|.-. ++..+|++++
T Consensus 773 ~i~~~i~~~--~~~~~l~~sipy~-~--GW~~~vdGk~~~~~~~~~~f~g~~l~-~G~h~i~~~y 831 (843)
T PF09586_consen 773 HISGTITAT--SKDGYLVLSIPYD-K--GWKAYVDGKKVEIEKVNGGFMGVPLP-KGEHQIELKY 831 (843)
T ss_pred EEEEEEEec--CCCcEEEEEeccC-C--CCEEEECCEEccHhhhcCeEEEEEEc-CCceEEEEEE
Confidence 677777762 2345889999953 3 89999999999875 47889998765 4445677665
No 81
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=31.49 E-value=3.8e+02 Score=30.49 Aligned_cols=192 Identities=19% Similarity=0.137 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCccccccCCchhhhccccCCCcccchhhhHHH-------hHH
Q 044240 172 GHYLSASALMWASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPSRYFDHLEALKPVWAPYYTIHKIL-------AGL 244 (859)
Q Consensus 172 Gh~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~~~r~~~l~~~w~pyy~~HkI~-------aGL 244 (859)
|--+--.|-+-..||++.+.+++...+|.|-+-.+. ..--.|+.-.. -.++|...=.+ |- .-+
T Consensus 188 gtlilefaals~~tg~~ifee~arkaldflwekr~r-ss~l~g~~ini-------hsgdw~rkdsg--igagidsyyey~ 257 (587)
T KOG2430|consen 188 GTLILEFAALSRFTGAPIFEEKARKALDFLWEKRHR-SSDLMGTTINI-------HSGDWTRKDSG--IGAGIDSYYEYL 257 (587)
T ss_pred chhhhhHHHHhhccCChhhHHHHHHHHHHHHHHhcc-cccccceeEEe-------ccCcceecccC--cCcchHHHHHHH
Confidence 333333343445799999999999999998766552 22222221100 11333322111 22 344
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHHHhhhhhhcccccccccccCCCCCchhHHHHH----HHHhcCCH-HHHHHHhhc--
Q 044240 245 LDQYKYADNAHALKMATRMVEYFYNRVQKVIRKYSVARHWQYLNEEPGGMNDVLYR----LFSITKDP-RHLFLAHLF-- 317 (859)
Q Consensus 245 ld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmneaL~~----LY~~TGd~-ryL~LA~~f-- 317 (859)
+.+|..-|++..|+-.-+-.|-+.+......--+....|.-+++ .+|=| ++|.- |--+-||- .-+++-+.+
T Consensus 258 lkayillgddsfldrfn~hydai~ryi~k~pi~ldvhihkp~l~-ar~~m-dallaf~pglqvlkgdik~aie~heml~q 335 (587)
T KOG2430|consen 258 LKAYILLGDDSFLDRFNKHYDAIKRYINKGPIFLDVHIHKPMLA-ARGFM-DALLAFFPGLQVLKGDIKEAIEMHEMLFQ 335 (587)
T ss_pred HHHhheeccHHHHHHHHHHHHHHHHHhcCCCeEEEEecccchhh-HhhHH-HHHHHhCcchhhhccccHHHHHHHHHHHH
Confidence 56677779999988877777777654432100001111111121 12212 22211 12223442 222222111
Q ss_pred --ccccccccccccCCCCCCCcccCCcce----eeehhhHHHhcCchHHHHHHHHHHHHhhccCeEee
Q 044240 318 --AKPCFLGLLAVQSNDISDFHVNTHIPL----VIGTQRRYELTGELLHKEMGTFFMDLVNSSHTYAT 379 (859)
Q Consensus 318 --~~~~~~~~la~~~d~l~~~HanthiP~----~~G~a~~Y~~TGD~~y~~aa~~fwd~V~~~h~y~T 379 (859)
.+..|+ |.+...|- ..|.-. -|+ +..---+|+.|||+.|++.++...++++++--.+.
T Consensus 336 vikkh~fl-peaft~df--~vhwae-hpirpefaestyflykat~dp~yl~v~k~iidninkyakvpc 399 (587)
T KOG2430|consen 336 VIKKHKFL-PEAFTHDF--QVHWAE-HPIRPEFAESTYFLYKATGDPHYLEVAKQIIDNINKYAKVPC 399 (587)
T ss_pred HHHHcccC-hHhhcccc--eeeccc-CCCChhhhhhheeeecccCCchHHHHHHHHHHHHhhheeCCc
Confidence 122232 22221111 123222 233 34444569999999999999999999987544333
No 82
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=30.06 E-value=3e+02 Score=33.92 Aligned_cols=80 Identities=13% Similarity=0.125 Sum_probs=47.7
Q ss_pred CChhHHHHHHHHHHHHHHHhhhCCCccccccCCchh----hh------cccc-CCCcccchhhhHHHhHHHHHHHHhCCh
Q 044240 186 HNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPSRYF----DH------LEAL-KPVWAPYYTIHKILAGLLDQYKYADNA 254 (859)
Q Consensus 186 ~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~~----~r------~~~l-~~~w~pyy~~HkI~aGLld~y~~tG~~ 254 (859)
+++...++++..|+.|...|. .||-.++|....- +. +.+. .+.=.+-+|.|-|+ +|.. +.. ..+
T Consensus 382 ~~~~~~~~l~~a~~~Ll~~Qn--~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~-aL~~-~~~-r~~ 456 (621)
T TIGR01787 382 DEHVKRDRLRDAVNWILGMQS--SNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQ-ALGA-FGH-RAD 456 (621)
T ss_pred cccccHHHHHHHHHHHHHHcC--CCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHH-HHHH-hcC-ccH
Confidence 456777889999999999999 9998888753110 11 1111 01111235776553 5532 211 113
Q ss_pred hHHHHHHHHHHHHHHH
Q 044240 255 HALKMATRMVEYFYNR 270 (859)
Q Consensus 255 ~aL~va~~~ad~~~~~ 270 (859)
...+.+.+..+|+.+.
T Consensus 457 ~~~~~i~rAl~~L~~~ 472 (621)
T TIGR01787 457 EIRNVLERALEYLRRE 472 (621)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 4557889999998753
No 83
>smart00125 IL1 Interleukin-1 homologues. Cytokines with various biological functions. Interluekin 1 alpha and beta are also known as hematopoietin and catabolin.
Probab=30.05 E-value=50 Score=33.21 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=20.7
Q ss_pred CeEEEeecCCcceEEEE-eecCceEEEE
Q 044240 773 NTVSLESKSHKGCYVYS-LKSGKSMTLR 799 (859)
Q Consensus 773 ~~vsles~~~pg~~~~~-~~~g~~~~l~ 799 (859)
.+.+|||+.+||||+.. ......|.|-
T Consensus 106 ~~~~FeSaa~PgWfIsTs~~~~~PV~l~ 133 (147)
T smart00125 106 NKVEFESAAHPNWFISTSQEEDKPVFLG 133 (147)
T ss_pred CceEEEEccCCCcEEEeccccCceEEee
Confidence 48899999999999987 3334446665
No 84
>PLN00119 endoglucanase
Probab=28.94 E-value=1.1e+02 Score=36.48 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhccCeEeecCCCCCCCCCCCCcccccCCcccccchhhHHHHHHHHHhhcccCCchHHHHHHH
Q 044240 359 LHKEMGTFFMDLVNSSHTYATGGTSVGEFWRDPKRLATTLGTNNEESCTTYNMLKVSRNLFRWTKESAYADFYER 433 (859)
Q Consensus 359 ~y~~aa~~fwd~V~~~h~y~TGG~g~~E~f~~~~~l~~~l~~~~~ETCas~nmlkl~~~Lf~~tgd~~YaD~~ER 433 (859)
+++++|+..|+...+++..-.......+ ..|+++.-.=+++.-+-.|++.|||.+|.++++.
T Consensus 203 ~lL~~Ak~~y~fA~~~~g~y~~~~~~~~-------------g~Y~ss~~~DEl~WAAawLY~aTgd~~Yl~~~~~ 264 (489)
T PLN00119 203 ILIGHAKDLFEFAKAHPGLYQNSIPNAG-------------GFYASSGYEDELLWAAAWLHRATNDQTYLDYLTQ 264 (489)
T ss_pred HHHHHHHHHHHHHHhCCCcccCCCCCCC-------------CCCCCCchhhHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4699999999998876642111111111 1233444445788888899999999999998764
No 85
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=27.00 E-value=5e+02 Score=32.17 Aligned_cols=108 Identities=18% Similarity=0.161 Sum_probs=62.1
Q ss_pred CCCCCcCC-------CCCccccchhhHHHHHHHHHHhcCC----hhHHHHHHHHHHHHHHHhhhCCCccccccCCchhhh
Q 044240 155 AYGGWEDP-------TSQLRGHFVGHYLSASALMWASTHN----DTLKEKMSAVVSALSHCQKKIGSGYLSAFPSRYFDH 223 (859)
Q Consensus 155 ~~gGWe~~-------dsdl~GH~~Gh~LsA~a~~~a~t~D----~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~~~r 223 (859)
..|||-|. |+|- ++.=|.|+..+- ..+. ..-.+++.+-|+.|+.+|. .||=.++|....-.+
T Consensus 357 ~~GGW~f~~~~~~~pdsD~----Ta~~L~Al~~~~-~~~~~~~~~~~~~~l~~av~~Ll~~Qn--~dGGw~~y~~~~~~~ 429 (634)
T TIGR03463 357 AKGGWCFSDGDHGWPVSDC----TAEALSASLVLE-PLGLNPEERVPQARLQDAVEFILSRQN--EDGGFGTYERQRGPR 429 (634)
T ss_pred CCCccccccCCCCCCcccc----HHHHHHHHHHHh-hcCCcccccccHHHHHHHHHHHHHhcC--CCCCEeccCCCCcHH
Confidence 45788776 3343 577777776542 2221 2345789999999999999 788777775321111
Q ss_pred c----------cc-cCCCcccchhhhHHHhHHHHHHHHhC---ChhHHHHHHHHHHHHHHH
Q 044240 224 L----------EA-LKPVWAPYYTIHKILAGLLDQYKYAD---NAHALKMATRMVEYFYNR 270 (859)
Q Consensus 224 ~----------~~-l~~~w~pyy~~HkI~aGLld~y~~tG---~~~aL~va~~~ad~~~~~ 270 (859)
| .+ ..+.=-+.+|.|-|. +|........ .++....+.+..+|+.+.
T Consensus 430 ~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~-aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~ 489 (634)
T TIGR03463 430 VLELLNPSEMFSTCMTDVSYVECTSSCLQ-ALAAWRKHHPHVPDGRITRAISRGVRFLRSR 489 (634)
T ss_pred HHhcCChHHhhcccccCCCcCcHHHHHHH-HHHHHhhcCcchhhhHHHHHHHHHHHHHHHh
Confidence 1 11 112224677887654 5533221111 133445678888888653
No 86
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=25.94 E-value=1.4e+02 Score=27.72 Aligned_cols=51 Identities=12% Similarity=0.314 Sum_probs=31.6
Q ss_pred EEEECCeecccCCCCCEEEEEeecCCCCEEEEEec-ceeEEE-----eccCCccccCCeEEEeecceeee
Q 044240 569 KAMLNGQSLALPSPGNSLSVTKTWSSDDKLTIHLP-LSLWTE-----AIKDDRPKYASLQAILYGPYLLA 632 (859)
Q Consensus 569 ~v~VNG~~~~~~~~ggY~~I~R~W~~GD~I~L~LP-m~lr~~-----~~~d~~~~~~~~vAv~rGPlVlA 632 (859)
.+.|||+... ..++..+.++ +||.|+|+-. -..|+. +++.- -+.|||+|+.
T Consensus 30 ~~~v~~~~~~-~~~~~~~~l~----~g~~i~~~a~~~~a~~lll~GePl~Ep--------i~~~GpFVmn 86 (104)
T PF05726_consen 30 SVEVGGEEDP-LEAGQLVVLE----DGDEIELTAGEEGARFLLLGGEPLNEP--------IVQYGPFVMN 86 (104)
T ss_dssp EEEETTTTEE-EETTEEEEE-----SECEEEEEESSSSEEEEEEEE----S----------EEETTEEES
T ss_pred cEEECCCcce-ECCCcEEEEC----CCceEEEEECCCCcEEEEEEccCCCCC--------EEEECCcccC
Confidence 3566666411 1256677776 8999999998 777774 33321 4689999986
No 87
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=24.18 E-value=4.8e+02 Score=22.70 Aligned_cols=25 Identities=12% Similarity=0.267 Sum_probs=17.8
Q ss_pred eeeEEEEeecCCCCCCCcEEEECCeecccC
Q 044240 551 KASTLNLRIPSWSNSNGAKAMLNGQSLALP 580 (859)
Q Consensus 551 ~~ftL~LRIP~Wa~~~~~~v~VNG~~~~~~ 580 (859)
.++.|.+--|+ ..+|++||+++...
T Consensus 38 ~~~~i~iGna~-----~v~v~~nG~~~~~~ 62 (77)
T PF13464_consen 38 EPFRIRIGNAG-----AVEVTVNGKPVDLL 62 (77)
T ss_pred CCEEEEEeCCC-----cEEEEECCEECCCC
Confidence 45566555543 68999999999863
No 88
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=23.83 E-value=3e+02 Score=34.08 Aligned_cols=108 Identities=16% Similarity=0.102 Sum_probs=60.2
Q ss_pred CCCCCcCCCCCc---cccchhhHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCccccccCCch-hhhccc----
Q 044240 155 AYGGWEDPTSQL---RGHFVGHYLSASALMWASTHNDTLKEKMSAVVSALSHCQKKIGSGYLSAFPSRY-FDHLEA---- 226 (859)
Q Consensus 155 ~~gGWe~~dsdl---~GH~~Gh~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~~~~-~~r~~~---- 226 (859)
+.|||-|.+.+- .=--+..-|.|+..+ ....++...+.+++-|+.|+..|. .||..++|.... ..-++.
T Consensus 364 ~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~-~~~~~~~~~~~i~ra~~wLl~~Qn--~dGgw~af~~~~~~~~l~~~~f~ 440 (635)
T TIGR01507 364 EPGGWAFQFDNVYYPDVDDTAVVVWALNGL-RLPDERRRRDAMTKAFRWIAGMQS--SNGGWGAFDVDNTSDLLNHIPFC 440 (635)
T ss_pred CCCccCCCCCCCCCCCchhHHHHHHHHHHc-CCCccccchHHHHHHHHHHHHhcC--CCCCEecccCCcchhHHhcCCcc
Confidence 458887753110 000145567776554 222455677899999999999999 999998874211 000111
Q ss_pred ----cCCCcccchhhhHHHhHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q 044240 227 ----LKPVWAPYYTIHKILAGLLDQYKYADNAHALKMATRMVEYFYNR 270 (859)
Q Consensus 227 ----l~~~w~pyy~~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~~ 270 (859)
+-+.-.+-+|.|-++ ++...|....-+.+.+..+|+.+.
T Consensus 441 d~~~~~D~~~~d~Ta~~l~-----al~~~g~~~~~~~i~rav~~L~~~ 483 (635)
T TIGR01507 441 DFGAVTDPPTADVTARVLE-----CLGSFGYDDAWPVIERAVEYLKRE 483 (635)
T ss_pred ccccccCCCCccHHHHHHH-----HHHHhCCCchhHHHHHHHHHHHHc
Confidence 111111223554443 333344444356788888998653
No 89
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=23.34 E-value=4.1e+02 Score=23.85 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=17.0
Q ss_pred eEEEEeecCCCCCCCcEEEECCeecc
Q 044240 553 STLNLRIPSWSNSNGAKAMLNGQSLA 578 (859)
Q Consensus 553 ftL~LRIP~Wa~~~~~~v~VNG~~~~ 578 (859)
.+|.|.+| . +++|.|||++..
T Consensus 3 a~itv~vP---a--dAkl~v~G~~t~ 23 (75)
T TIGR03000 3 ATITVTLP---A--DAKLKVDGKETN 23 (75)
T ss_pred eEEEEEeC---C--CCEEEECCeEcc
Confidence 47888889 2 689999999865
No 90
>PF07771 TSGP1: Tick salivary peptide group 1; InterPro: IPR011694 This entry contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis (Black-legged tick) []. Also present are peptides from a related tick species, Ixodes ricinus (Sheep tick). They are characterised by a putative signal peptide, indicative of secretion, and conserved cysteine residues.
Probab=21.77 E-value=56 Score=31.74 Aligned_cols=35 Identities=26% Similarity=0.189 Sum_probs=27.6
Q ss_pred CCccchhHHHHHHHHhhccccccccCCCCC-cchhh
Q 044240 1 MKGFELLNLFIVLLSCISASARECSNKLPE-SHQLR 35 (859)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 35 (859)
|+.+.+++|+|++...+.++++.|-|.... +.+.|
T Consensus 1 m~~~~~~~vlv~la~~~~~~~~~Cp~~~r~~~~~~~ 36 (120)
T PF07771_consen 1 MGLTVVTLVLVSLAFFGSAAAHGCPDKTRPASDTNR 36 (120)
T ss_pred CcceeehhhHHhHHhhhhhhhhcCCCCCcCCCCCCC
Confidence 778877777777777888999999998765 66665
No 91
>PF08547 CIA30: Complex I intermediate-associated protein 30 (CIA30); InterPro: IPR013857 Mitochondrial complex I intermediate-associated protein 30 (CIA30) is present in human and mouse, and also in Schizosaccharomyces pombe (Fission yeast) which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits. This means it is possible that it is not directly involved in oxidative phosphorylation [, ].
Probab=21.63 E-value=3.5e+02 Score=26.88 Aligned_cols=53 Identities=19% Similarity=0.296 Sum_probs=37.4
Q ss_pred CCcccccccc--cccccCCCcCCCceEEEecCCCceecccccc--ccccceEEEEee
Q 044240 805 KKPKFNHAVS--FVMEKGKSKYHPISFVAKGTNRNYLLEPLLS--FRDESYTVYFNI 857 (859)
Q Consensus 805 ~~~~f~~~as--F~~~~gl~~~~~~sf~a~g~~~~~ll~pl~~--~~~~~~~~~~~~ 857 (859)
...+|+..-+ +....-|+.|..|++.++|+.|.|.+.=--. .....|...|..
T Consensus 47 ~~~GFa~~r~~~~~~~~dls~y~~l~l~vrgdGr~Y~~~l~~~~~~~~~~y~~~f~t 103 (157)
T PF08547_consen 47 NNGGFASVRTPSFPSPLDLSGYDGLELRVRGDGRTYKVNLRTDNDEPSDSYQARFQT 103 (157)
T ss_pred CCCceEEEEEccCCCcCCCCCCcEEEEEEEcCCceEEEEEEeCCCCCCceEEEEEec
Confidence 4556766555 6777889999999999999999987642221 344566666654
No 92
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=20.51 E-value=2.1e+02 Score=35.20 Aligned_cols=57 Identities=23% Similarity=0.263 Sum_probs=40.1
Q ss_pred CCCCCcCC-------CCCccccchhhHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHHHhhhCCCccccccC
Q 044240 155 AYGGWEDP-------TSQLRGHFVGHYLSASALMWASTH--NDTLKEKMSAVVSALSHCQKKIGSGYLSAFP 217 (859)
Q Consensus 155 ~~gGWe~~-------dsdl~GH~~Gh~LsA~a~~~a~t~--D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~a~~ 217 (859)
..|||-|. ++|. ++.-|.|+..+....+ +....+.+++.|+.|..+|. +||-+++|.
T Consensus 358 ~~GGW~fs~~~~~~pd~d~----Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn--~dGgf~~y~ 423 (634)
T cd02892 358 RKGGWAFSTANQGYPDSDD----TAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQN--SNGGFAAFE 423 (634)
T ss_pred CCCCCCCCCCCCCCCCcCc----hHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccC--CCCCEeeec
Confidence 35788764 3333 4666666666544332 45677899999999999999 899888764
No 93
>TIGR03515 GldC gliding motility-associated protein GldC. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldC do not abolish the gliding phenotype but do impair it. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=20.37 E-value=2.1e+02 Score=27.29 Aligned_cols=48 Identities=10% Similarity=0.112 Sum_probs=34.8
Q ss_pred ccccCCCcccchhhhHHHhHHHHHHH-HhCChhHHHHHHHHHHHHHHHh
Q 044240 224 LEALKPVWAPYYTIHKILAGLLDQYK-YADNAHALKMATRMVEYFYNRV 271 (859)
Q Consensus 224 ~~~l~~~w~pyy~~HkI~aGLld~y~-~tG~~~aL~va~~~ad~~~~~~ 271 (859)
|+.-..+-+..--.|-++.|+-|-|+ +||+++.-+-++.+||||..++
T Consensus 56 WTKdMpVdEMK~Ff~qtl~~maDT~~rAT~d~kma~~m~dfcd~faekl 104 (108)
T TIGR03515 56 WTKDMPVDEMKRFFIETLGGMADTFLNATGDEKMAEDIKDLCDRLAQKL 104 (108)
T ss_pred ecCcCcHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 33333444444445778889987665 8999999999999999998765
Done!