BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044241
         (356 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BE4|A Chain A, X-ray Structure An Ef-hand Protein From Danio Rerio
           Dr.36843
 pdb|2Q4U|A Chain A, Ensemble Refinement Of The Crystal Structure Of An Ef-Hand
           Protein From Danio Rerio Dr.36843
          Length = 272

 Score = 31.2 bits (69), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 117 TYGYISMAQALAFLSDFKLGHYMKIPPKSM 146
           + GYIS A+   FL D  L H  KIPP  +
Sbjct: 117 SSGYISAAELKNFLKDLFLQHKKKIPPNKL 146


>pdb|3LD9|A Chain A, Crystal Structure Of Thymidylate Kinase From Ehrlichia
           Chaffeensis At 2.15a Resolution
 pdb|3LD9|B Chain B, Crystal Structure Of Thymidylate Kinase From Ehrlichia
           Chaffeensis At 2.15a Resolution
 pdb|3LD9|C Chain C, Crystal Structure Of Thymidylate Kinase From Ehrlichia
           Chaffeensis At 2.15a Resolution
 pdb|3LD9|D Chain D, Crystal Structure Of Thymidylate Kinase From Ehrlichia
           Chaffeensis At 2.15a Resolution
          Length = 223

 Score = 28.5 bits (62), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 19/100 (19%)

Query: 53  EGFGKVLQLPWWGLLLACLIALGFTLPIGIINATTNQQPGLNVITELIIGFLYPGKPVAN 112
           +G GK  Q        + L+A   +   G+ N    ++PG  ++ E           V N
Sbjct: 30  DGSGKTTQ--------SHLLAEYLSEIYGVNNVVLTREPGGTLLNE----------SVRN 71

Query: 113 VVFKTYGYISMAQALAFLSDFKLGHYMKIPPKSMFIVQLV 152
           ++FK  G  S+++ L F++  +  H++KI   S+   ++V
Sbjct: 72  LLFKAQGLDSLSELLFFIA-MRREHFVKIIKPSLMQKKIV 110


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.142    0.496 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,380,819
Number of Sequences: 62578
Number of extensions: 483050
Number of successful extensions: 928
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 2
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)