Query 044241
Match_columns 356
No_of_seqs 128 out of 1120
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 12:49:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044241.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044241hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 7E-99 2E-103 758.8 20.4 346 2-354 413-759 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 1.8E-88 3.8E-93 708.1 26.4 311 3-323 369-679 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 1.3E-66 2.8E-71 548.7 27.7 304 3-320 341-654 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 9E-62 1.9E-66 509.9 25.6 286 14-318 337-624 (624)
5 TIGR00733 putative oligopeptid 100.0 4.2E-32 9.1E-37 281.9 22.3 234 64-317 332-589 (591)
6 COG1297 Predicted membrane pro 99.8 2.3E-19 5E-24 181.3 16.9 276 29-323 310-619 (624)
7 PF03169 OPT: OPT oligopeptide 81.6 35 0.00075 36.5 14.2 54 109-164 65-120 (624)
8 COG0628 yhhT Predicted permeas 70.6 48 0.001 32.6 11.0 123 30-166 203-331 (355)
9 TIGR00733 putative oligopeptid 57.9 2.7E+02 0.0058 29.9 19.3 107 61-168 2-116 (591)
10 TIGR02872 spore_ytvI sporulati 54.1 1.7E+02 0.0037 28.0 11.3 40 126-165 286-329 (341)
11 KOG2203 GTP-binding protein [G 41.1 19 0.00041 38.1 2.3 42 3-45 641-682 (772)
12 PF11292 DUF3093: Protein of u 40.6 66 0.0014 28.0 5.3 30 32-64 9-38 (143)
13 PF01864 DUF46: Putative integ 40.0 87 0.0019 28.2 6.1 32 208-239 41-72 (175)
14 PRK12287 tqsA pheromone autoin 39.1 3.8E+02 0.0083 26.2 12.0 48 118-165 266-318 (344)
15 PF09512 ThiW: Thiamine-precur 37.6 99 0.0021 27.1 5.9 27 144-170 90-117 (150)
16 PF13829 DUF4191: Domain of un 35.2 1E+02 0.0022 28.8 6.0 46 26-76 21-66 (224)
17 PF06645 SPC12: Microsomal sig 33.4 63 0.0014 24.8 3.7 44 36-80 12-55 (76)
18 PF05879 RHD3: Root hair defec 30.5 91 0.002 34.3 5.6 43 3-46 621-663 (742)
19 TIGR00802 nico high-affinity n 30.3 1.6E+02 0.0034 28.5 6.5 37 31-67 140-182 (280)
20 PF14715 FixP_N: N-terminal do 26.4 88 0.0019 22.3 3.1 25 30-55 18-42 (51)
21 PLN02579 sphingolipid delta-4 25.7 1.1E+02 0.0025 30.0 4.9 17 18-35 20-40 (323)
22 PRK10983 putative inner membra 25.4 6.8E+02 0.015 24.9 11.1 44 122-165 287-334 (368)
23 PHA02132 hypothetical protein 24.7 86 0.0019 24.0 2.9 27 139-165 41-67 (86)
24 PF11174 DUF2970: Protein of u 23.2 2.2E+02 0.0048 20.7 4.7 39 199-237 7-51 (56)
25 PF09991 DUF2232: Predicted me 23.0 3.7E+02 0.0081 24.9 7.8 21 222-242 16-36 (290)
26 PRK11017 codB cytosine permeas 22.0 4.1E+02 0.0088 26.7 8.2 67 32-104 16-84 (404)
27 KOG2466 Uridine permease/thiam 21.7 48 0.001 34.7 1.4 88 58-145 83-177 (572)
28 PF06570 DUF1129: Protein of u 20.7 3E+02 0.0066 24.9 6.4 11 278-288 191-201 (206)
29 PF06939 DUF1286: Protein of u 20.3 3.1E+02 0.0068 22.9 5.6 18 138-155 64-81 (114)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=7e-99 Score=758.76 Aligned_cols=346 Identities=60% Similarity=1.213 Sum_probs=333.0
Q ss_pred hHHHHHHHhhhhCCCCcChhHHHhhhcCCCCChHHHHHHHHHHHHHHHHhhhhcccCcCchhHHHHHHHHHHHHhhhcce
Q 044241 2 IMEMWMKTKDAVGDKFADVHTRMMRRNYDSVPGWWFHAVLVVSVALALYACEGFGKVLQLPWWGLLLACLIALGFTLPIG 81 (356)
Q Consensus 2 ~~~~~~~~~~~~~~~~~D~h~~lm~~~Y~evP~wwy~~~~~~s~~~~i~~~~~~~~~~~lp~w~~~lai~l~~v~~~p~g 81 (356)
-||||+++|++ .++++|+|.|+||| |||||+|||.+++++++++++++++.|+++.|+|||++++|+++++++++|+|
T Consensus 413 gkdiw~~~~~~-~~k~~DiHtrlMkk-YKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPig 490 (761)
T KOG2262|consen 413 GKDIWQQTKKA-FNKKMDIHTRLMKK-YKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIG 490 (761)
T ss_pred cHHHHHHHHhc-cccCCCHHHHHHHH-hccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHH
Confidence 38999999988 57889999999999 99999999999999999999999999966669999999999999999999999
Q ss_pred eEEeeccCCcchhHHHHHHHHHhcCCCcchhHhHHHHHHhHHHHHHHHhhhhccccccCCChHHHHHHHHHhhhhhhhHH
Q 044241 82 IINATTNQQPGLNVITELIIGFLYPGKPVANVVFKTYGYISMAQALAFLSDFKLGHYMKIPPKSMFIVQLVGTVVASSVY 161 (356)
Q Consensus 82 ~~~a~t~~~~~l~~l~qli~G~~~pg~~~anl~f~~~~~~~~~qa~~~~~DlKlG~y~k~pPR~~f~aQliGtivg~~v~ 161 (356)
+++|+||+++++|+++|+|.||+.||||+|||.||.||++++.||+++++|+|+|||||+|||.||.+|++||+++++||
T Consensus 491 ii~AtTNq~~GLNiitE~i~Gy~~PgrPiAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~tivs~~Vn 570 (761)
T KOG2262|consen 491 IIQATTNQTPGLNIITEYIIGYIYPGRPIANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTIVAGFVN 570 (761)
T ss_pred HhhhhccCCccHHHHHHHHHHhhcCCchHHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHHHhheeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCCCcccchHHHHHHhHHhhhhhcCCccccCCCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 044241 162 FGTAWWLLGSIKDICDPAALPEGSPWTCPGDDVFYSASIIWGVIGPGKMFTKEGIYPEMNWCFLIGFLAPVPVWLLSRKF 241 (356)
Q Consensus 162 ~~v~~~~l~~~~~~c~~~l~~~~~~ft~p~~~~~~~~si~wg~igp~~~f~~g~~y~~~~~~fliG~~~pi~~~ll~r~~ 241 (356)
.+|..|++.+++|+|+.+ +++.||||..+++|++|++||++||+|+|+.++.|+.+.|+|++|+++|+++|+++|++
T Consensus 571 ~gv~~W~m~~I~~iC~~~---~~s~~TCP~~rvffnASvIWGlIGP~riF~~~g~Y~~l~wFFLiGa~~pv~vw~~~k~f 647 (761)
T KOG2262|consen 571 LGVAWWLMYSIPNICTTD---QNSPWTCPSDRVFFNASVIWGLIGPKRIFGSLGIYPGLNWFFLIGALAPVLVWLLQKKF 647 (761)
T ss_pred HHhHHHHHhcccccccCC---CCCCccCCCCceEEeceeeeecccchhhcCCCCccCcchHHHHHHHHhhHHHHHHHHhc
Confidence 999999999999999987 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccchHHHHHHhhcCCCcchhhhhhHHHHHHHHHHHHHhhChhhhhhhhhhhhhhhhhhHHHHHHHHHHHHhcC
Q 044241 242 PKKRWIKQIHMPIIIGTASSMPTAKAVHFNTWGVVGIFFNYYIYRKYKAWWARHTYILSGALDAGIAFMGVVIYFALQNY 321 (356)
Q Consensus 242 P~~~~~~~i~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w~~kYnyvlaagL~~G~~i~~vii~fa~~~~ 321 (356)
|+++|.+++|+|++++|.+.+||++..||++|+++|++|++++|||++.||+||||+||||||+|++++++++||++|++
T Consensus 648 Pk~~w~~~i~~pvl~gg~~~mPpat~vny~sw~iv~fifny~i~r~~~~WW~kYNyvLsaaldaG~a~~~vliffcv~~~ 727 (761)
T KOG2262|consen 648 PKKKWIKQINPPVLFGGTANMPPATAVNYTSWAIVGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVAFMGVLIFFCVQYP 727 (761)
T ss_pred chhhhhhccCcceEecccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccchhHHHhHhhheeccC
Confidence 99888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCCC-CCCCCCCCCCCCcccCCCCC
Q 044241 322 DNFGPNWWGLDSG-DHCPLAKCPTAPGVKSKGCP 354 (356)
Q Consensus 322 ~~~~~~WwG~n~~-~~c~~~~~~~~~~~~~~~~~ 354 (356)
+. ..+||| |++ ++|+..+|+..++...+.+|
T Consensus 728 ~~-~~~WWG-n~~~~~c~~a~cp~~~~v~~~~~~ 759 (761)
T KOG2262|consen 728 GI-SLNWWG-NTVSAGCDLAGCPTAKGVVVSGCP 759 (761)
T ss_pred CC-cccccc-CcCCCCCCccCCCcCCeeecCCCC
Confidence 98 667999 764 48999999988877766554
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=1.8e-88 Score=708.12 Aligned_cols=311 Identities=37% Similarity=0.812 Sum_probs=303.3
Q ss_pred HHHHHHHhhhhCCCCcChhHHHhhhcCCCCChHHHHHHHHHHHHHHHHhhhhcccCcCchhHHHHHHHHHHHHhhhccee
Q 044241 3 MEMWMKTKDAVGDKFADVHTRMMRRNYDSVPGWWFHAVLVVSVALALYACEGFGKVLQLPWWGLLLACLIALGFTLPIGI 82 (356)
Q Consensus 3 ~~~~~~~~~~~~~~~~D~h~~lm~~~Y~evP~wwy~~~~~~s~~~~i~~~~~~~~~~~lp~w~~~lai~l~~v~~~p~g~ 82 (356)
|||++++|+ ++++|+|.|+|+| |||||+|||++++++++++++++++.| ++++|||++++|+++++++.+|+|+
T Consensus 369 ~~i~~~~~~---~~~~D~h~rlM~~-Y~evP~WWy~~~l~is~~~~~~~v~~~--~t~lP~W~~~lal~l~~i~~iP~~~ 442 (681)
T TIGR00727 369 KLLFNALKD---DDYPDPHSNLMKA-YKEVPDWWYLAVFLGFFGMGIATVEHW--PTETPVWGLFVCLIFNFVFLIPTTI 442 (681)
T ss_pred HHHHHHHhc---CCCCChhHHHhhc-CCCCcHHHHHHHHHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 788888873 5678999999999 999999999999999999999999999 8999999999999999999999999
Q ss_pred EEeeccCCcchhHHHHHHHHHhcCCCcchhHhHHHHHHhHHHHHHHHhhhhccccccCCChHHHHHHHHHhhhhhhhHHH
Q 044241 83 INATTNQQPGLNVITELIIGFLYPGKPVANVVFKTYGYISMAQALAFLSDFKLGHYMKIPPKSMFIVQLVGTVVASSVYF 162 (356)
Q Consensus 83 ~~a~t~~~~~l~~l~qli~G~~~pg~~~anl~f~~~~~~~~~qa~~~~~DlKlG~y~k~pPR~~f~aQliGtivg~~v~~ 162 (356)
++|+||++.++|+++|+|+|++.||||++||+||++|+++.+||.++++|||+|||||+|||+||.+|++||++|++||+
T Consensus 443 i~a~t~~~~~ln~l~eli~Gy~~PG~p~a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl~~~~v~~ 522 (681)
T TIGR00727 443 LQATTNISFGLNVLTEFIVGYALPGRPLAMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATIWQIFVQI 522 (681)
T ss_pred eEeecCCccchhHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCCCCCCCCCCcccchHHHHHHhHHhhhhhcCCccccCCCCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 044241 163 GTAWWLLGSIKDICDPAALPEGSPWTCPGDDVFYSASIIWGVIGPGKMFTKEGIYPEMNWCFLIGFLAPVPVWLLSRKFP 242 (356)
Q Consensus 163 ~v~~~~l~~~~~~c~~~l~~~~~~ft~p~~~~~~~~si~wg~igp~~~f~~g~~y~~~~~~fliG~~~pi~~~ll~r~~P 242 (356)
+|++|++++++|+|+++ ++++||||+.+++|++|++||++||+|+|++|++|+.++|+|++|+++|+++|+++|++|
T Consensus 523 ~v~~~~l~~i~~~c~~~---~~~~ftcp~~~~~f~asv~Wg~iGP~r~F~~g~~Y~~l~~~fliGa~~pi~~~~~~r~~P 599 (681)
T TIGR00727 523 GVLNWAIGNIDNFCTAD---QNAKYTCPNAVVFFNASVIWGVIGPKRIFSHGYIYPGLKWFWLIGACIGIFFWLVWKKWP 599 (681)
T ss_pred HHHHHHHhcCcccCCCC---CCCCccCCCccceeehehhhhhcchHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999987 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccchHHHHHHhhcCCCcchhhhhhHHHHHHHHHHHHHhhChhhhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCC
Q 044241 243 KKRWIKQIHMPIIIGTASSMPTAKAVHFNTWGVVGIFFNYYIYRKYKAWWARHTYILSGALDAGIAFMGVVIYFALQNYD 322 (356)
Q Consensus 243 ~~~~~~~i~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w~~kYnyvlaagL~~G~~i~~vii~fa~~~~~ 322 (356)
++ +.|++|.|+++.|++++||+++.++++++++|++||+|+||||++||+||||++|||||+|++++++++||++++++
T Consensus 600 ~~-~~~~~n~pv~~~~~g~~~~a~~~n~~s~~~vg~~f~~~irr~~~~ww~kYnYvlsAald~G~a~~~~iiff~v~~~~ 678 (681)
T TIGR00727 600 KF-YPRYLDWPMLFVGTGYIPPATPYNYMYYTSVGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGLVLSAIIIFFCLQLKD 678 (681)
T ss_pred hh-hhhhCCccHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHhHheeEEEeCC
Confidence 87 68999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 044241 323 N 323 (356)
Q Consensus 323 ~ 323 (356)
+
T Consensus 679 ~ 679 (681)
T TIGR00727 679 T 679 (681)
T ss_pred C
Confidence 6
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=1.3e-66 Score=548.66 Aligned_cols=304 Identities=43% Similarity=0.873 Sum_probs=282.4
Q ss_pred HHHHHHHhhhhCCCCcChhHHHhhhcC--------CCCChHHHHHHHHHHHHHHHHhhhhcccCcCchhHHHHHHHHHHH
Q 044241 3 MEMWMKTKDAVGDKFADVHTRMMRRNY--------DSVPGWWFHAVLVVSVALALYACEGFGKVLQLPWWGLLLACLIAL 74 (356)
Q Consensus 3 ~~~~~~~~~~~~~~~~D~h~~lm~~~Y--------~evP~wwy~~~~~~s~~~~i~~~~~~~~~~~lp~w~~~lai~l~~ 74 (356)
||+++++|+. .++.+|.|.|+|++ | +|||+|||+.++++++++++++++.+.+++++|||++++|+++++
T Consensus 341 ~~~~~~~~~~-~~~~~~~~~~~~~~-~~d~~~~~~~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~ 418 (654)
T TIGR00728 341 RDIISARRDH-YKLGRDDHVRLLSR-DEDLKVKNYKEVPAWWYLSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAF 418 (654)
T ss_pred HHHHHHHHHh-hhccCCCChHHHhh-cccccccccCcCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHH
Confidence 6677777765 45567788777766 6 999999999999999999999988874458999999999999999
Q ss_pred HhhhcceeEEeeccCCcchhHHHHHHHHHhcCCCcchhHhHHHHHHhHHHHHHHHhhhhccccccCCChHHHHHHHHHhh
Q 044241 75 GFTLPIGIINATTNQQPGLNVITELIIGFLYPGKPVANVVFKTYGYISMAQALAFLSDFKLGHYMKIPPKSMFIVQLVGT 154 (356)
Q Consensus 75 v~~~p~g~~~a~t~~~~~l~~l~qli~G~~~pg~~~anl~f~~~~~~~~~qa~~~~~DlKlG~y~k~pPR~~f~aQliGt 154 (356)
++++|.++++|+||.+.++|+++|+|+|++.||+|++||+++++++++++||.|++||||+|||+|+|||+||++|++|+
T Consensus 419 i~~~~~~~~~g~tnp~~~l~~~~~li~g~~~pg~~~a~l~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~ 498 (654)
T TIGR00728 419 VLAIPIGILAGITNPVSGLNIITELIIGYILPGRPLANLAFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGT 498 (654)
T ss_pred HHHHhhhheEEeecccchhhHHHHHhheeecCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHhhhccCCCCCCCCCCCCCcccchHHHHHHhHHhhhhhcCCccccCCCCchhHHHHHHHHHHHHHHH
Q 044241 155 VVASSVYFGTAWWLLGSIKDICDPAALPEGSPWTCPGDDVFYSASIIWGVIGPGKMFTKEGIYPEMNWCFLIGFLAPVPV 234 (356)
Q Consensus 155 ivg~~v~~~v~~~~l~~~~~~c~~~l~~~~~~ft~p~~~~~~~~si~wg~igp~~~f~~g~~y~~~~~~fliG~~~pi~~ 234 (356)
++|+++++++++|+++++++ ++++|+||++++++++|++||++||+ +|+.+++|+.+.+++++| +++++.
T Consensus 499 ~vg~~v~~~v~~~~~~~~~~--------~~~~~~~p~a~~~~~aa~~~g~~Gp~-~f~~~~~y~~~~~~~l~G-~~~i~~ 568 (654)
T TIGR00728 499 IVGSLVNAPVLEWLYHAIGN--------QNNNFTCPNALVFYNASLIWGVIGPK-IFSGKGLYCGLMWFFLVG-VGAVLV 568 (654)
T ss_pred HHHHHHHHHHHHHHHhccCC--------CCCCccCCcccchhhheeeeccccch-hcCCCCccHHHHHHHHHH-HHHHHH
Confidence 99999999999999876653 45789999999999999999999998 999999999999999999 899999
Q ss_pred HHHHHhcCCcccccccchHHHHHHhhcCCCcchhhhhhHHHHHHHHHHHHHhhChhhh--hhhhhhhhhhhhhhHHHHHH
Q 044241 235 WLLSRKFPKKRWIKQIHMPIIIGTASSMPTAKAVHFNTWGVVGIFFNYYIYRKYKAWW--ARHTYILSGALDAGIAFMGV 312 (356)
Q Consensus 235 ~ll~r~~P~~~~~~~i~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w~--~kYnyvlaagL~~G~~i~~v 312 (356)
+++||++|+ +.|++|+|+++++..++||.++.++.+++++|.++++++|||+++|| +||||++||||||||+++++
T Consensus 569 ~~~~~~~p~--~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vG~~~~~~~~rr~~~~~~~~~y~~~laagL~~G~al~gv 646 (654)
T TIGR00728 569 WLVRKLFPK--WIKYINPPVAVGGGGYIPPATAVNYSTWAAVGGFFNYRWRKNKRADWKAEKYNYVLAAGLIAGEALAGV 646 (654)
T ss_pred HHHHHHccc--hhhhcCHHHhhhhhhccCCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhHHHHHH
Confidence 999999997 46899999999888899999999999999999999999999999887 99999999999999999999
Q ss_pred HHHHHHhc
Q 044241 313 VIYFALQN 320 (356)
Q Consensus 313 ii~fa~~~ 320 (356)
++||++++
T Consensus 647 iiff~~~~ 654 (654)
T TIGR00728 647 IIFFCLGL 654 (654)
T ss_pred HHHHhccC
Confidence 99999875
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=9e-62 Score=509.89 Aligned_cols=286 Identities=39% Similarity=0.806 Sum_probs=267.6
Q ss_pred CCCCcChhHHHhhhcCCCCChHHHHHHHHHHHHHHHHhhhhcccCcCchhHHHHHHHHHHHHhhhcceeEEeeccC--Cc
Q 044241 14 GDKFADVHTRMMRRNYDSVPGWWFHAVLVVSVALALYACEGFGKVLQLPWWGLLLACLIALGFTLPIGIINATTNQ--QP 91 (356)
Q Consensus 14 ~~~~~D~h~~lm~~~Y~evP~wwy~~~~~~s~~~~i~~~~~~~~~~~lp~w~~~lai~l~~v~~~p~g~~~a~t~~--~~ 91 (356)
+++++|+|+++|++ |+|||+|||+.++++++++++++++.+.+++++|||+.++++++++++++|.++++|+||+ +.
T Consensus 337 ~~~~~d~~~~~~~~-~~~vP~ww~~~~~~~~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~P~~ 415 (624)
T PF03169_consen 337 KSSEDDPHYRLMRT-YKEVPMWWYLAGLVVSFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGINPVS 415 (624)
T ss_pred ccccCCchhhhhhh-cCCcchHHHHHHHHHHHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCCCcch
Confidence 46779999999999 9999999999999999999999998884448999999999999999999999999999999 55
Q ss_pred chhHHHHHHHHHhcCCCcchhHhHHHHHHhHHHHHHHHhhhhccccccCCChHHHHHHHHHhhhhhhhHHHHHHHHHhhh
Q 044241 92 GLNVITELIIGFLYPGKPVANVVFKTYGYISMAQALAFLSDFKLGHYMKIPPKSMFIVQLVGTVVASSVYFGTAWWLLGS 171 (356)
Q Consensus 92 ~l~~l~qli~G~~~pg~~~anl~f~~~~~~~~~qa~~~~~DlKlG~y~k~pPR~~f~aQliGtivg~~v~~~v~~~~l~~ 171 (356)
++|+++|+|+|++.||+|++||+++++++++++||.|++||||+|||+|+|||+||.+|++|+++|+++++++++++ +
T Consensus 416 ~~~~~sqli~g~~~pg~~~a~l~~~~~~~~~~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~--~ 493 (624)
T PF03169_consen 416 GLNILSQLIFGLLLPGNPIANLLFGGYGYAAASQAGDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLL--N 493 (624)
T ss_pred hhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999876 7
Q ss_pred ccCCCCCCCCCCCCCcccchHHHHHHhHHhhhhhcCCccccCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Q 044241 172 IKDICDPAALPEGSPWTCPGDDVFYSASIIWGVIGPGKMFTKEGIYPEMNWCFLIGFLAPVPVWLLSRKFPKKRWIKQIH 251 (356)
Q Consensus 172 ~~~~c~~~l~~~~~~ft~p~~~~~~~~si~wg~igp~~~f~~g~~y~~~~~~fliG~~~pi~~~ll~r~~P~~~~~~~i~ 251 (356)
.++.|.++ +++.++||..++++.+|++||++||+| +.+|..+++++++|+++|++.++++|++|+.
T Consensus 494 ~~~~~~~~---~~~~~~~~ap~a~~~aav~~g~~~~~~----~~~~~~~~~~~~~G~~~~i~~~l~~~~~P~~------- 559 (624)
T PF03169_consen 494 QAYPCGPD---QGDSFSCPAPQAFAWAAVAWGLIGPQR----GLPYSALPWGFLIGAVLPILFWLLQRKFPSP------- 559 (624)
T ss_pred HhhccCcc---ccccCcCcchHHHHHHHHHHHhcCCcc----cchHHHHHHHHHHHHHHHHHHHHHHhhCChh-------
Confidence 88899866 556999999999999999999999977 7899999999999999999999998888843
Q ss_pred hHHHHHHhhcCCCcchhhhhhHHHHHHHHHHHHHhhChhhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Q 044241 252 MPIIIGTASSMPTAKAVHFNTWGVVGIFFNYYIYRKYKAWWARHTYILSGALDAGIAFMGVVIYFAL 318 (356)
Q Consensus 252 ~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w~~kYnyvlaagL~~G~~i~~vii~fa~ 318 (356)
+++.|...+++.++.++++++++|.++++++|||+++||+||||++|||||+||+++++++++++
T Consensus 560 --~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~y~~~laagl~aG~~l~~li~~~~~ 624 (624)
T PF03169_consen 560 --LAFGGASSIGFYLPSNYTSAIFIGGLFQFYWRRRYPKWWEKYNYVLAAGLIAGEALMGLIIAFLV 624 (624)
T ss_pred --heeeecccccccchhHHHHHHHHHHHHHHHhhhcchhHHHhHhhHHHHHHHHHHHHHHHHHHHhC
Confidence 56667777888888999999999999999999999999999999999999999999999998863
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=4.2e-32 Score=281.89 Aligned_cols=234 Identities=16% Similarity=0.218 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHhhhcceeEEee--ccCCc--chhHHHHHHHHHhc------------CCCcchhHhHHHHHHhHHHHHH
Q 044241 64 WGLLLACLIALGFTLPIGIINAT--TNQQP--GLNVITELIIGFLY------------PGKPVANVVFKTYGYISMAQAL 127 (356)
Q Consensus 64 w~~~lai~l~~v~~~p~g~~~a~--t~~~~--~l~~l~qli~G~~~------------pg~~~anl~f~~~~~~~~~qa~ 127 (356)
.+.+++++++++++...+.+.|+ |+.+| ++.+++|++++.+. |+...+|++.+++...+++||.
T Consensus 332 ~~~~la~vl~f~~a~v~g~~~G~iGts~nPvsg~~~~t~l~~a~~~~~~g~~~~~~~~~~~v~~~L~~g~vv~~aa~~Ag 411 (591)
T TIGR00733 332 VMAVLMLIIGFFVAAIAGYMAGLVGSSNSPISGIGIMSVLFTALILKGLGLSGTGSQIPELMAATIFTAAVVCTAAAISN 411 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhcCcccCccccchhHHHHHHHHHHHHHHHHHHH
Confidence 45677777888887777777788 66676 79999999999998 3556789999999999999999
Q ss_pred HHhhhhccccccCCChHHHHHHHHHhhhhhhhHHHHHHHHHhhhccCCCC-CCCCCCCCCcccchHHHHHHhHHhhhhhc
Q 044241 128 AFLSDFKLGHYMKIPPKSMFIVQLVGTVVASSVYFGTAWWLLGSIKDICD-PAALPEGSPWTCPGDDVFYSASIIWGVIG 206 (356)
Q Consensus 128 ~~~~DlKlG~y~k~pPR~~f~aQliGtivg~~v~~~v~~~~l~~~~~~c~-~~l~~~~~~ft~p~~~~~~~~si~wg~ig 206 (356)
|++||||+||+++.+||+|+++|++|+++|+++.++++..+.+ ..++.. ++ .++++.|++|++..|.+.+ -
T Consensus 412 D~mqDlKtG~LlGatPr~Q~~aq~iG~~vg~~v~~~v~~ll~~-ayg~~~~~~-~~~~~~l~APqA~l~~ava--~---- 483 (591)
T TIGR00733 412 DNLQDLKTGYLVGATPWRQQVALIIGTFVGALVMAPVLNLLIK-AYGIAGTPT-AKGENALPAPQAFLMAAVT--E---- 483 (591)
T ss_pred HHhHhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhccccccc-CCCccccCCCHHHHHHHHH--h----
Confidence 9999999999999999999999999999999999999975544 434322 11 1245779999999999876 2
Q ss_pred CCccccCCCCchhHHHH-HHHHHHHHHHHHHHHHhcCCcccccccchHHHHHHhhcCCCcchhhhhhHHHHHHHHHHHHH
Q 044241 207 PGKMFTKEGIYPEMNWC-FLIGFLAPVPVWLLSRKFPKKRWIKQIHMPIIIGTASSMPTAKAVHFNTWGVVGIFFNYYIY 285 (356)
Q Consensus 207 p~~~f~~g~~y~~~~~~-fliG~~~pi~~~ll~r~~P~~~~~~~i~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~r 285 (356)
-++++. ++|. +.+|++..+.+.++++..++++ +++..|.+..|++++.|. +++..+++|.+..++|+
T Consensus 484 --gi~~~~-----l~~~~i~~ga~~g~~l~~~~~~~~~~~--~~~~~p~lavgig~yLP~---~~s~~~~iG~li~~~~~ 551 (591)
T TIGR00733 484 --GVFTGT-----LEWTMVFIGAGIGIALIIIDEILAKRG--SKFRTPVMAVGVGIYLPL---SLGVPILLGAFLARILV 551 (591)
T ss_pred --hhcCCC-----ccHHHHHHHHHHHHHHHHHHHHhhhcc--cccCCchhHHHHHhhcch---hHHHHHHHHHHHHHHHH
Confidence 334332 3453 4667777878888887776542 344457677899987765 46788999999999999
Q ss_pred hhChhh------hhhhhhhhhhhhhhhHHHHHHHHHHH
Q 044241 286 RKYKAW------WARHTYILSGALDAGIAFMGVVIYFA 317 (356)
Q Consensus 286 r~~~~w------~~kYnyvlaagL~~G~~i~~vii~fa 317 (356)
||+++- -++|.+++||||++||+++++++++.
T Consensus 552 r~~~~~~~~~~~~~~~g~~vASGLIaGE~l~Gv~~A~~ 589 (591)
T TIGR00733 552 SRGRKEGESFTDKKRLGVLGAAGLIVGESLTGVVFAAI 589 (591)
T ss_pred HhcccccchhhhhhceeeEEecHhhcchHHHHHHHHHH
Confidence 986531 14678999999999999999998764
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=99.82 E-value=2.3e-19 Score=181.35 Aligned_cols=276 Identities=15% Similarity=0.140 Sum_probs=182.2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhhhcccCcC---chhH----HHHHHHHHHHHhhhcceeEEeecc----CCcchhHHH
Q 044241 29 YDSVPGWWFHAVLVVSVALALYACEGFGKVLQ---LPWW----GLLLACLIALGFTLPIGIINATTN----QQPGLNVIT 97 (356)
Q Consensus 29 Y~evP~wwy~~~~~~s~~~~i~~~~~~~~~~~---lp~w----~~~lai~l~~v~~~p~g~~~a~t~----~~~~l~~l~ 97 (356)
.+|+|.-|-...++...+-..+...++-+++. ..|. +.++++++++.+.--.|++++.-+ .-.++..++
T Consensus 310 e~Dl~~~~~~~~~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~v~GflvaAv~gymagLVgSssspiSGi~i~~ 389 (624)
T COG1297 310 ERDLPPKLVLLVLLATVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVAAVCGYMAGLVGSSSSPISGIGILS 389 (624)
T ss_pred hhcCChhhHHHHHHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchHHHHH
Confidence 57888777654443333322222333211111 2233 345555566666655666665433 223566555
Q ss_pred HHHHHHh------------cCCC----cchhHhHHHHHHhHHHHHHHHhhhhccccccCCChHHHHHHHHHhhhhhhhHH
Q 044241 98 ELIIGFL------------YPGK----PVANVVFKTYGYISMAQALAFLSDFKLGHYMKIPPKSMFIVQLVGTVVASSVY 161 (356)
Q Consensus 98 qli~G~~------------~pg~----~~anl~f~~~~~~~~~qa~~~~~DlKlG~y~k~pPR~~f~aQliGtivg~~v~ 161 (356)
.++...+ -|.. ...+++..+....++.++.|++||||+||+.+..||+|+.+|++|+++|+++.
T Consensus 390 v~~~~l~~l~~G~~~~~~~~~~~~~~~~~~~~~t~~vv~a~A~is~DnlQDLKTG~LvgATPwkQqvaliiG~~~~alvi 469 (624)
T COG1297 390 VTLLSLLILILGQSGGLFIDPLMRKFLVAATLFTASVVAAVAAISNDNLQDLKTGYLVGATPWKQQVALIIGCFVGALVI 469 (624)
T ss_pred HHHHHHHHHHhccccccccCcccchhHHHHHHHHHHHHHHHHHhhccchhhhhhCeeecCChHHHHHHHHHhHHhhhhhH
Confidence 5554222 2322 26788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCCCcccchHHHHHHhHHhhhhhcCCccccCCCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 044241 162 FGTAWWLLGSIKDICDPAALPEGSPWTCPGDDVFYSASIIWGVIGPGKMFTKEGIYPEMNWCFLIGFLAPVPVWLLSRKF 241 (356)
Q Consensus 162 ~~v~~~~l~~~~~~c~~~l~~~~~~ft~p~~~~~~~~si~wg~igp~~~f~~g~~y~~~~~~fliG~~~pi~~~ll~r~~ 241 (356)
..|++.+ ++.+++..+. ..+....+.|++...-+.+ +-+|+....|..+..+.++|+.+-.+-+.+++++
T Consensus 470 ~pvL~ll-~~aYgf~ga~-~r~~~~l~apqa~lma~ia--------~Gvf~~~lew~mi~~g~~~gi~lI~id~~l~~~~ 539 (624)
T COG1297 470 APVLELL-NKAYGFAGAP-PRQGMDLAAPQATLMATIA--------KGVFTGNLEWSMILAGAGIGIVLIGIDERLKGRG 539 (624)
T ss_pred HHHHHHH-HHHhCcCCCC-CCCCCCCcchHHHHHHHHh--------cccCCCCcchHHHHHHHhHhheeeeccHHHhcCC
Confidence 9999854 4555553211 1122227777776655554 5778877788888777777777766666665522
Q ss_pred CCcccccccchHHHHHHhhcCCCcchhhhhhHHHHHHHHHHHHHhhC-------hhhhhhhhhhhhhhhhhhHHHHHHHH
Q 044241 242 PKKRWIKQIHMPIIIGTASSMPTAKAVHFNTWGVVGIFFNYYIYRKY-------KAWWARHTYILSGALDAGIAFMGVVI 314 (356)
Q Consensus 242 P~~~~~~~i~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~-------~~w~~kYnyvlaagL~~G~~i~~vii 314 (356)
. +...|++..|++.+.|. ..+...++|.+..+.+.|+. ..--++-.+++||||+.||++.++++
T Consensus 540 -----~-~~~lpvlAvGvGIylP~---s~~ipi~vG~~l~~~v~~~~~~~~~~~~e~~~r~gvl~aaGLIvGEsL~gvi~ 610 (624)
T COG1297 540 -----G-KLRLPVLAVGVGIYLPP---SLTIPIFVGGVLRWAVDRKLKKGDERYKERAKRIGVLFAAGLIVGESLFGVIT 610 (624)
T ss_pred -----c-cccccceeeeeeeecCh---hhchHHHHHHHHHHHHHHhcccccchhhhcccceeEEEeeccccchHHHHHHH
Confidence 2 23367777899965442 34455678888777777762 23345577999999999999999999
Q ss_pred HHHHhcCCC
Q 044241 315 YFALQNYDN 323 (356)
Q Consensus 315 ~fa~~~~~~ 323 (356)
...+-..|.
T Consensus 611 a~ii~~~g~ 619 (624)
T COG1297 611 ALIIVGSGK 619 (624)
T ss_pred HHHheecCC
Confidence 887666544
No 7
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=81.58 E-value=35 Score=36.49 Aligned_cols=54 Identities=13% Similarity=0.088 Sum_probs=24.1
Q ss_pred cchhHhHHHHHHhHHH--HHHHHhhhhccccccCCChHHHHHHHHHhhhhhhhHHHHH
Q 044241 109 PVANVVFKTYGYISMA--QALAFLSDFKLGHYMKIPPKSMFIVQLVGTVVASSVYFGT 164 (356)
Q Consensus 109 ~~anl~f~~~~~~~~~--qa~~~~~DlKlG~y~k~pPR~~f~aQliGtivg~~v~~~v 164 (356)
+.-|.+....+..+.. -+.+++.-+..=.+++ .+.-+.-|+.-++.+.++.++.
T Consensus 65 ~kE~~~vq~~asa~~~~~~a~~~i~~ipa~~~~~--~~~~~~~~~l~~~~~~~lG~~~ 120 (624)
T PF03169_consen 65 IKENNLVQTMASAAGGMAYAAGFIAAIPALLFLG--QPFSFGYLILWTLSTQLLGYGF 120 (624)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHhh
Confidence 3444444444443333 4444444433223332 2224555555555555555444
No 8
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=70.65 E-value=48 Score=32.56 Aligned_cols=123 Identities=20% Similarity=0.275 Sum_probs=70.8
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhh-hcccCcCchhHHHHHHHHHHHHhhhcceeEEeeccCCcchhHHHHHHHHHhcCCC
Q 044241 30 DSVPGWWFHAVLVVSVALALYACE-GFGKVLQLPWWGLLLACLIALGFTLPIGIINATTNQQPGLNVITELIIGFLYPGK 108 (356)
Q Consensus 30 ~evP~wwy~~~~~~s~~~~i~~~~-~~~~~~~lp~w~~~lai~l~~v~~~p~g~~~a~t~~~~~l~~l~qli~G~~~pg~ 108 (356)
+++-.|..+ -.++++..++.+.. ++ -.++|. +.++++..++.-.+|. ..+.+..+--.+.++..-|
T Consensus 203 ~~~~~y~~g-q~i~al~~gi~~~igl~--ilgvp~-alllgil~g~~~lIP~--------iG~~i~~ip~~i~al~~~~- 269 (355)
T COG0628 203 ATLSGYLRG-QVLVALIVGILTGIGLL--ILGVPY-ALLLGLLAGLLSLIPY--------IGPVIGLIPAVIIALLQGG- 269 (355)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHH--HHcccH-HHHHHHHHHHHHhhcc--------cccHHHHHHHHHHHHHhcc-
Confidence 445555554 33555555554331 11 245654 5566666555555552 1223334444555555544
Q ss_pred cchhHhHHHHHHhHHHHH-HHHhhhhccccccCCChHHHHHHHHHhh----hhhhhHHHHHHH
Q 044241 109 PVANVVFKTYGYISMAQA-LAFLSDFKLGHYMKIPPKSMFIVQLVGT----VVASSVYFGTAW 166 (356)
Q Consensus 109 ~~anl~f~~~~~~~~~qa-~~~~~DlKlG~y~k~pPR~~f~aQliGt----ivg~~v~~~v~~ 166 (356)
..-.....++....+|. .+++.-.=+|+.+|+||=..+.+.+.|. ++|.++.+.++-
T Consensus 270 -~~~~l~~~~~~~vi~~i~~n~l~P~l~g~~~~l~p~~ilisll~g~~l~G~~G~ila~pl~~ 331 (355)
T COG0628 270 -PWGALLVLIVFLVIQQIEGNILRPKLMGKRLGLHPLVILLSLLGGGSLFGFVGLILAPPLAA 331 (355)
T ss_pred -hHHHHHHHHHHHHHHHHhcceeccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233344444445444 5677888899999999999999999876 566666666653
No 9
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=57.92 E-value=2.7e+02 Score=29.89 Aligned_cols=107 Identities=13% Similarity=0.089 Sum_probs=58.0
Q ss_pred chhHHHHHHHHHHHHhhhcceeEEeeccCCcchh----HHHHHHHHHhcCCCcchhHhHHHHHHhHHHHHHHHhhh----
Q 044241 61 LPWWGLLLACLIALGFTLPIGIINATTNQQPGLN----VITELIIGFLYPGKPVANVVFKTYGYISMAQALAFLSD---- 132 (356)
Q Consensus 61 lp~w~~~lai~l~~v~~~p~g~~~a~t~~~~~l~----~l~qli~G~~~pg~~~anl~f~~~~~~~~~qa~~~~~D---- 132 (356)
+.+-++++.++++.++...+.++.=.+|.+++.+ .++-.+.-.+.+.++.-|.+..+.++.+.+-+. +..-
T Consensus 2 lT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~~t~~EnnivQT~asA~~~~ag-~~~~lPAl 80 (591)
T TIGR00733 2 YTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRDRSILENNMVQTAASAAGTLSS-VIFVLPAL 80 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3445666666666666665555544555555444 333333434444566666665555554443331 1111
Q ss_pred hccccccCCChHHHHHHHHHhhhhhhhHHHHHHHHH
Q 044241 133 FKLGHYMKIPPKSMFIVQLVGTVVASSVYFGTAWWL 168 (356)
Q Consensus 133 lKlG~y~k~pPR~~f~aQliGtivg~~v~~~v~~~~ 168 (356)
..+|+.-..|.-.++..=+.|.++|.+.....-+.+
T Consensus 81 ~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~ 116 (591)
T TIGR00733 81 LMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAF 116 (591)
T ss_pred HhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123333234556666666788899999988865544
No 10
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=54.05 E-value=1.7e+02 Score=28.00 Aligned_cols=40 Identities=10% Similarity=0.025 Sum_probs=31.4
Q ss_pred HHHHhhhhccccccCCChHHHHHHHHHhhh----hhhhHHHHHH
Q 044241 126 ALAFLSDFKLGHYMKIPPKSMFIVQLVGTV----VASSVYFGTA 165 (356)
Q Consensus 126 a~~~~~DlKlG~y~k~pPR~~f~aQliGti----vg~~v~~~v~ 165 (356)
-.+.++-.=+|.-+++||=.++.+.+.|.. +|.++.+.++
T Consensus 286 ~~~~l~P~i~g~~~~l~p~~vl~~~l~g~~~~G~~G~~l~~~~~ 329 (341)
T TIGR02872 286 LRQILEPKVVSSSIGLHPLATLISMYIGLKLFGFLGLIFGPVIV 329 (341)
T ss_pred HHHhHhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777999999999999999998874 4666666554
No 11
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=41.12 E-value=19 Score=38.11 Aligned_cols=42 Identities=14% Similarity=0.284 Sum_probs=29.8
Q ss_pred HHHHHHHhhhhCCCCcChhHHHhhhcCCCCChHHHHHHHHHHH
Q 044241 3 MEMWMKTKDAVGDKFADVHTRMMRRNYDSVPGWWFHAVLVVSV 45 (356)
Q Consensus 3 ~~~~~~~~~~~~~~~~D~h~~lm~~~Y~evP~wwy~~~~~~s~ 45 (356)
|++|++||...+--..|+.+..... -.-+|.|.|+++.++.+
T Consensus 641 ksi~~qFkrt~~~v~~d~k~s~~nt-~t~iPPw~~vlLiVLG~ 682 (772)
T KOG2203|consen 641 KSIWRQFKRTEYTVTQDIKRSEINT-NTWIPPWAIVLLIVLGW 682 (772)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhcC-CCCCCcHHHHHHHHHhH
Confidence 7899999855333446888888876 58899977766544443
No 12
>PF11292 DUF3093: Protein of unknown function (DUF3093); InterPro: IPR021443 This family of proteins with unknown function appears to be restricted to Actinobacteria. Some members are annotated as alanine rich membrane proteins however this cannot be confirmed.
Probab=40.60 E-value=66 Score=27.97 Aligned_cols=30 Identities=37% Similarity=0.601 Sum_probs=17.7
Q ss_pred CChHHHHHHHHHHHHHHHHhhhhcccCcCchhH
Q 044241 32 VPGWWFHAVLVVSVALALYACEGFGKVLQLPWW 64 (356)
Q Consensus 32 vP~wwy~~~~~~s~~~~i~~~~~~~~~~~lp~w 64 (356)
+|.|||+...++...++...... ...++.|
T Consensus 9 ~p~~wW~~~~~~~~~~~~~v~~~---~~~~~~~ 38 (143)
T PF11292_consen 9 VPWWWWLAAAAVAALLAAEVVLG---PPSLWAW 38 (143)
T ss_pred CCHHHHHHHHHHHHHHHHhhhcC---cchHHHH
Confidence 89999988877744433333322 3455555
No 13
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=39.98 E-value=87 Score=28.15 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=25.9
Q ss_pred CccccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 044241 208 GKMFTKEGIYPEMNWCFLIGFLAPVPVWLLSR 239 (356)
Q Consensus 208 ~~~f~~g~~y~~~~~~fliG~~~pi~~~ll~r 239 (356)
||+||.|+.+.-..-+.+.|.++.++..++.+
T Consensus 41 rRilGdgKTwrG~i~gvl~g~l~g~i~~~l~~ 72 (175)
T PF01864_consen 41 RRILGDGKTWRGFIGGVLAGTLVGIIQGLLLP 72 (175)
T ss_pred CEecCCCCeEEeeeHHHHHHHHHHHHHHHHhh
Confidence 79999999998777788888888887766643
No 14
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=39.13 E-value=3.8e+02 Score=26.22 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=36.8
Q ss_pred HHHhHHHHH-HHHhhhhccccccCCChHHHHHHHHHhh----hhhhhHHHHHH
Q 044241 118 YGYISMAQA-LAFLSDFKLGHYMKIPPKSMFIVQLVGT----VVASSVYFGTA 165 (356)
Q Consensus 118 ~~~~~~~qa-~~~~~DlKlG~y~k~pPR~~f~aQliGt----ivg~~v~~~v~ 165 (356)
..+...+|. .++++=.=+|+-+++||=..+.+.++|. ++|.++++++.
T Consensus 266 i~~~iiq~i~~nvi~P~i~g~~v~l~P~~vllsil~gg~l~G~~G~ilavPl~ 318 (344)
T PRK12287 266 AGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLT 318 (344)
T ss_pred HHHHHHHHHHhcchhhhhhhccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 445555555 6777888899999999999999999977 56666776665
No 15
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=37.60 E-value=99 Score=27.12 Aligned_cols=27 Identities=15% Similarity=0.353 Sum_probs=22.8
Q ss_pred HHHHHHHHHhh-hhhhhHHHHHHHHHhh
Q 044241 144 KSMFIVQLVGT-VVASSVYFGTAWWLLG 170 (356)
Q Consensus 144 R~~f~aQliGt-ivg~~v~~~v~~~~l~ 170 (356)
-.-..+|++|| ++|+++++.++.+++.
T Consensus 90 ~~a~lGEviGTGiIGal~sypva~~~~g 117 (150)
T PF09512_consen 90 WAAALGEVIGTGIIGALLSYPVAKLFMG 117 (150)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHhC
Confidence 45678899998 6999999999988774
No 16
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=35.18 E-value=1e+02 Score=28.83 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=28.8
Q ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhhhhcccCcCchhHHHHHHHHHHHHh
Q 044241 26 RRNYDSVPGWWFHAVLVVSVALALYACEGFGKVLQLPWWGLLLACLIALGF 76 (356)
Q Consensus 26 ~~~Y~evP~wwy~~~~~~s~~~~i~~~~~~~~~~~lp~w~~~lai~l~~v~ 76 (356)
++++|.+++|..++ +++.++++++...++ +-+|+.+++++.++++.
T Consensus 21 rk~dp~l~~~ml~a-~l~~~~v~v~ig~l~----~~~~~~~i~gi~~g~l~ 66 (224)
T PF13829_consen 21 RKEDPKLPWLMLGA-FLGPIAVFVLIGLLF----GSWWYWLIIGILLGLLA 66 (224)
T ss_pred HHHCcchHHHHHHH-HHHHHHHHHHHHHHH----ccHHHHHHHHHHHHHHH
Confidence 33377777766654 455555555545443 46677788888877775
No 17
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=33.44 E-value=63 Score=24.84 Aligned_cols=44 Identities=9% Similarity=0.162 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCcCchhHHHHHHHHHHHHhhhcc
Q 044241 36 WFHAVLVVSVALALYACEGFGKVLQLPWWGLLLACLIALGFTLPI 80 (356)
Q Consensus 36 wy~~~~~~s~~~~i~~~~~~~~~~~lp~w~~~lai~l~~v~~~p~ 80 (356)
.+-.++.++.++++++.+.. ++..+..+..+.+++++++..+|.
T Consensus 12 l~~~il~~~~iisfi~Gy~~-q~~~~~~~~~~~g~~~~~lv~vP~ 55 (76)
T PF06645_consen 12 LMQYILIISAIISFIVGYIT-QSFSYTFYIYGAGVVLTLLVVVPP 55 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhheeCC
Confidence 33345666666666655543 266788888888888888887763
No 18
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=30.54 E-value=91 Score=34.30 Aligned_cols=43 Identities=14% Similarity=0.473 Sum_probs=27.9
Q ss_pred HHHHHHHhhhhCCCCcChhHHHhhhcCCCCChHHHHHHHHHHHH
Q 044241 3 MEMWMKTKDAVGDKFADVHTRMMRRNYDSVPGWWFHAVLVVSVA 46 (356)
Q Consensus 3 ~~~~~~~~~~~~~~~~D~h~~lm~~~Y~evP~wwy~~~~~~s~~ 46 (356)
+++|++||..-+..+.|--+..... -..+|.|.|+++++++.=
T Consensus 621 ~~i~~~Fk~~~~~~~~eAkrs~~~~-~~~iP~w~~~ll~vLGwN 663 (742)
T PF05879_consen 621 KSIWRQFKREIDYTYVEAKRSIISS-NTQIPPWMYLLLLVLGWN 663 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHhHH
Confidence 5789999764222333443333344 588999999988777664
No 19
>TIGR00802 nico high-affinity nickel-transporter, HoxN/HupN/NixA family. This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterized members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.
Probab=30.31 E-value=1.6e+02 Score=28.52 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=19.4
Q ss_pred CCChHHHHHHHHHHHH------HHHHhhhhcccCcCchhHHHH
Q 044241 31 SVPGWWFHAVLVVSVA------LALYACEGFGKVLQLPWWGLL 67 (356)
Q Consensus 31 evP~wwy~~~~~~s~~------~~i~~~~~~~~~~~lp~w~~~ 67 (356)
+=|+-.|..+++..++ ++++....-....++|+|.++
T Consensus 140 ~~pw~mypvG~LFGLGFDTATEIaLL~isa~~a~~g~~~~~il 182 (280)
T TIGR00802 140 TKSWHMYPVGFLFGLGFDTATEVALLGLSASAAARGLSIAAVL 182 (280)
T ss_pred cCchHHHHHHHHHHcccchHHHHHHHHHHHHHhccCCChHHHH
Confidence 4477778888776643 122222111013468887753
No 20
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=26.37 E-value=88 Score=22.28 Aligned_cols=25 Identities=16% Similarity=0.561 Sum_probs=15.8
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhhhc
Q 044241 30 DSVPGWWFHAVLVVSVALALYACEGF 55 (356)
Q Consensus 30 ~evP~wwy~~~~~~s~~~~i~~~~~~ 55 (356)
..+|.||.. ++.++++++++-...|
T Consensus 18 nplP~ww~~-~f~~tivfa~~Y~~~y 42 (51)
T PF14715_consen 18 NPLPRWWLW-LFYGTIVFAVGYLVLY 42 (51)
T ss_pred CCCCHHHHH-HHHHHHHHHHHHHHHH
Confidence 458888865 5566777666544333
No 21
>PLN02579 sphingolipid delta-4 desaturase
Probab=25.70 E-value=1.1e+02 Score=30.02 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=10.4
Q ss_pred cChh---HHHh-hhcCCCCChH
Q 044241 18 ADVH---TRMM-RRNYDSVPGW 35 (356)
Q Consensus 18 ~D~h---~~lm-~~~Y~evP~w 35 (356)
|++| +|.+ ++ |+|+..+
T Consensus 20 ~~~h~~rr~~il~~-ype~~~l 40 (323)
T PLN02579 20 DEPHASRRREILSK-YPQIKEL 40 (323)
T ss_pred hhhHHHHHHHHHHh-chHhhcc
Confidence 4566 3444 77 8887543
No 22
>PRK10983 putative inner membrane protein; Provisional
Probab=25.43 E-value=6.8e+02 Score=24.90 Aligned_cols=44 Identities=5% Similarity=-0.054 Sum_probs=33.0
Q ss_pred HHHHHHHHhhhhccccccCCChHHHHHHHHHhhh----hhhhHHHHHH
Q 044241 122 SMAQALAFLSDFKLGHYMKIPPKSMFIVQLVGTV----VASSVYFGTA 165 (356)
Q Consensus 122 ~~~qa~~~~~DlKlG~y~k~pPR~~f~aQliGti----vg~~v~~~v~ 165 (356)
...+..++++=.=+|.-.++||=..+.+.+.|.. +|.++.+.++
T Consensus 287 vv~~idnil~P~l~g~~~~l~~~~il~~~~~G~~~fG~~G~~lgp~i~ 334 (368)
T PRK10983 287 VVGTLDNVIRPMLIRMGADLPMILILSGVIGGLIAFGMIGLFIGPVVL 334 (368)
T ss_pred HHHHhhheeeeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777778899999999999999988875 4555555554
No 23
>PHA02132 hypothetical protein
Probab=24.75 E-value=86 Score=23.97 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=23.8
Q ss_pred cCCChHHHHHHHHHhhhhhhhHHHHHH
Q 044241 139 MKIPPKSMFIVQLVGTVVASSVYFGTA 165 (356)
Q Consensus 139 ~k~pPR~~f~aQliGtivg~~v~~~v~ 165 (356)
-|.|.|+.-..|+.|++.|+.+-+.++
T Consensus 41 sk~pa~sl~~vqiyg~ia~awlp~~~~ 67 (86)
T PHA02132 41 SKMPARSLCAVQVYGMIAGAWLPLAIY 67 (86)
T ss_pred ccCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 568999999999999999999877665
No 24
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=23.17 E-value=2.2e+02 Score=20.65 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=23.6
Q ss_pred HHhhhhhcCCcc------ccCCCCchhHHHHHHHHHHHHHHHHHH
Q 044241 199 SIIWGVIGPGKM------FTKEGIYPEMNWCFLIGFLAPVPVWLL 237 (356)
Q Consensus 199 si~wg~igp~~~------f~~g~~y~~~~~~fliG~~~pi~~~ll 237 (356)
|++|+.+|-++- |..+++.+.+..+++..++....+..+
T Consensus 7 sVl~af~GVqs~~~~e~Df~~~~p~~~Ii~gii~~~~fV~~Lv~l 51 (56)
T PF11174_consen 7 SVLWAFFGVQSSKNRERDFAQGSPVHFIIVGIILAALFVAGLVLL 51 (56)
T ss_pred HHHHHHhCcCcchhHHHHHHcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 577888886322 556666666666666665555544443
No 25
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=23.04 E-value=3.7e+02 Score=24.89 Aligned_cols=21 Identities=24% Similarity=0.733 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 044241 222 WCFLIGFLAPVPVWLLSRKFP 242 (356)
Q Consensus 222 ~~fliG~~~pi~~~ll~r~~P 242 (356)
.+++..++.|+|..+...|+.
T Consensus 16 l~~~~~~l~plP~~i~~~r~g 36 (290)
T PF09991_consen 16 LGFILAFLMPLPIAIVGLRYG 36 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 566777888888877776654
No 26
>PRK11017 codB cytosine permease; Provisional
Probab=21.96 E-value=4.1e+02 Score=26.68 Aligned_cols=67 Identities=13% Similarity=-0.036 Sum_probs=39.3
Q ss_pred CChHHHHHHHHHHHHHHHHhhhhcccCcCchhHHHHHHHHHHHHhhhcceeEEeeccCCcc--hhHHHHHHHHHh
Q 044241 32 VPGWWFHAVLVVSVALALYACEGFGKVLQLPWWGLLLACLIALGFTLPIGIINATTNQQPG--LNVITELIIGFL 104 (356)
Q Consensus 32 vP~wwy~~~~~~s~~~~i~~~~~~~~~~~lp~w~~~lai~l~~v~~~p~g~~~a~t~~~~~--l~~l~qli~G~~ 104 (356)
...||-......++..+-. . ..++++|..+++++++-++......+.+.-|...+ .-.+++..+|..
T Consensus 16 ~~~~~g~~~~~~~~~~g~~---l---~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k~G~~~~v~sR~~FG~~ 84 (404)
T PRK11017 16 TMVMLGFTFFSASMWAGGT---L---GTGLSFVDFLLAVLIGNLLLGIYTAALGYIGAKTGLSTHLLARFSFGEK 84 (404)
T ss_pred HHHHHHHHHHHHHHHHHHH---H---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCHHHHHHHHhchh
Confidence 4666665554444443332 2 35799999999999986653323333344444433 335677777755
No 27
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=21.71 E-value=48 Score=34.66 Aligned_cols=88 Identities=17% Similarity=0.313 Sum_probs=63.1
Q ss_pred CcCchhHHHHHHHHHHHHhhhcceeEEeecc--CCcchhHHHHHHHHHhcCCCcchh---HhHHHHHHhHH--HHHHHHh
Q 044241 58 VLQLPWWGLLLACLIALGFTLPIGIINATTN--QQPGLNVITELIIGFLYPGKPVAN---VVFKTYGYISM--AQALAFL 130 (356)
Q Consensus 58 ~~~lp~w~~~lai~l~~v~~~p~g~~~a~t~--~~~~l~~l~qli~G~~~pg~~~an---l~f~~~~~~~~--~qa~~~~ 130 (356)
+.+|.||....++.++-+++...-.+.++-| .+.+..+.+...+|....-=|+.| |-..-||.++- ++|..++
T Consensus 83 ~lGLswwq~~~tv~vG~~~~~~f~~lns~~G~~yhIsFpv~sR~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lm 162 (572)
T KOG2466|consen 83 ELGLSWWQTWITVWVGYLFTAIFLVLNSRPGSDYHISFPVLSRSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLM 162 (572)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHccCCCcccccceeeeeeeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHH
Confidence 6799999999999998888665555555544 344555777888887765545544 33344555543 6889999
Q ss_pred hhhccccccCCChHH
Q 044241 131 SDFKLGHYMKIPPKS 145 (356)
Q Consensus 131 ~DlKlG~y~k~pPR~ 145 (356)
-|=-.+|+.|+|++-
T Consensus 163 L~si~~~~~hipntl 177 (572)
T KOG2466|consen 163 LKSIFKSFSHIPNTL 177 (572)
T ss_pred HHHHhhhhhcCcccc
Confidence 998899999999874
No 28
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=20.74 E-value=3e+02 Score=24.87 Aligned_cols=11 Identities=27% Similarity=0.857 Sum_probs=5.6
Q ss_pred HHHHHHHHhhC
Q 044241 278 IFFNYYIYRKY 288 (356)
Q Consensus 278 ~~~~~~~rr~~ 288 (356)
+..-+|+|||+
T Consensus 191 ~~~~~~lkkk~ 201 (206)
T PF06570_consen 191 FALRFYLKKKY 201 (206)
T ss_pred HHHHHHHHHHh
Confidence 33455666544
No 29
>PF06939 DUF1286: Protein of unknown function (DUF1286); InterPro: IPR009705 This entry is represented by Sulfolobus virus STSV1, Orf8. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical archaeal proteins of around 120 residues in length. All members of this family seem to be Sulfolobus species specific. The function of this family is unknown.
Probab=20.31 E-value=3.1e+02 Score=22.85 Aligned_cols=18 Identities=11% Similarity=0.091 Sum_probs=12.6
Q ss_pred ccCCChHHHHHHHHHhhh
Q 044241 138 YMKIPPKSMFIVQLVGTV 155 (356)
Q Consensus 138 y~k~pPR~~f~aQliGti 155 (356)
..|+-||+++++-+.+..
T Consensus 64 lTHT~pRSv~WGli~slp 81 (114)
T PF06939_consen 64 LTHTLPRSVLWGLIPSLP 81 (114)
T ss_pred CccCcchhhHHHHHHHHH
Confidence 467789998886555443
Done!