Query 044241
Match_columns 356
No_of_seqs 128 out of 1120
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 22:29:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044241.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044241hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 62.0 95 0.0033 29.9 12.9 50 113-164 207-256 (511)
2 3iyz_A Aquaporin-4; water tran 55.8 1.2E+02 0.0042 28.8 11.9 20 141-160 171-190 (340)
3 2jwa_A Receptor tyrosine-prote 22.1 55 0.0019 21.7 2.3 19 272-290 23-41 (44)
4 2k1a_A Integrin alpha-IIB; sin 21.0 84 0.0029 20.6 3.0 19 58-76 5-23 (42)
5 2knc_A Integrin alpha-IIB; tra 19.1 85 0.0029 21.7 2.8 19 58-76 7-25 (54)
6 2y69_K Cytochrome C oxidase po 18.8 2.7E+02 0.0094 20.6 5.7 43 285-334 27-69 (80)
7 2l8s_A Integrin alpha-1; trans 17.6 1.3E+02 0.0044 20.8 3.5 15 29-43 4-18 (54)
8 1v54_K IHQ, cytochrome C oxida 16.0 2.8E+02 0.0097 19.1 5.7 43 285-334 3-45 (56)
9 2l2t_A Receptor tyrosine-prote 16.0 82 0.0028 20.8 2.1 17 274-290 24-40 (44)
10 2ks1_B Epidermal growth factor 15.5 83 0.0028 20.8 2.0 17 274-290 25-41 (44)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=62.00 E-value=95 Score=29.93 Aligned_cols=50 Identities=10% Similarity=0.162 Sum_probs=32.6
Q ss_pred HhHHHHHHhHHHHHHHHhhhhccccccCCChHHHHHHHHHhhhhhhhHHHHH
Q 044241 113 VVFKTYGYISMAQALAFLSDFKLGHYMKIPPKSMFIVQLVGTVVASSVYFGT 164 (356)
Q Consensus 113 l~f~~~~~~~~~qa~~~~~DlKlG~y~k~pPR~~f~aQliGtivg~~v~~~v 164 (356)
+....+++.+...+..+..|.|=-+ |.=||++..+-++.+++..+.+..+
T Consensus 207 ~~~~~~a~~G~e~~~~~a~E~k~P~--k~ip~ai~~~~~~~~~~y~~~~~~~ 256 (511)
T 4djk_A 207 FVAFILSYMGVEASATHVNEMSNPG--RDYPLAMLLLMVAAICLSSVGGLSI 256 (511)
T ss_dssp HHHHHHHHTTGGGGTGGGSSSSCCT--TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhccCcc--cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666667777777888887432 5557777777776666666665554
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=55.83 E-value=1.2e+02 Score=28.76 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=12.2
Q ss_pred CChHHHHHHHHHhhhhhhhH
Q 044241 141 IPPKSMFIVQLVGTVVASSV 160 (356)
Q Consensus 141 ~pPR~~f~aQliGtivg~~v 160 (356)
+++-..|..|+++|++=.++
T Consensus 171 ~s~~~~f~~E~i~Tf~Lv~~ 190 (340)
T 3iyz_A 171 LTAGHGLLVELIITFQLVFT 190 (340)
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 34456677777777654443
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=22.08 E-value=55 Score=21.72 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHhhChh
Q 044241 272 TWGVVGIFFNYYIYRKYKA 290 (356)
Q Consensus 272 ~~~~vG~~~~~~~rr~~~~ 290 (356)
..+++++.+..|+|||+.+
T Consensus 23 l~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhheehhhhh
Confidence 4467888888999999754
No 4
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=20.99 E-value=84 Score=20.56 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=12.1
Q ss_pred CcCchhHHHHHHHHHHHHh
Q 044241 58 VLQLPWWGLLLACLIALGF 76 (356)
Q Consensus 58 ~~~lp~w~~~lai~l~~v~ 76 (356)
+.++|+|-++++++.+.++
T Consensus 5 ~~~vp~wiIi~s~l~GLll 23 (42)
T 2k1a_A 5 ERAIPIWWVLVGVLGGLLL 23 (42)
T ss_dssp CCCCCHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHH
Confidence 3457777777776666554
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=19.10 E-value=85 Score=21.70 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=12.1
Q ss_pred CcCchhHHHHHHHHHHHHh
Q 044241 58 VLQLPWWGLLLACLIALGF 76 (356)
Q Consensus 58 ~~~lp~w~~~lai~l~~v~ 76 (356)
+..+|||-++++++.+.++
T Consensus 7 ~~~vp~wiIi~svl~GLll 25 (54)
T 2knc_A 7 ERAIPIWWVLVGVLGGLLL 25 (54)
T ss_dssp TTTCCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHH
Confidence 4457777777766665554
No 6
>2y69_K Cytochrome C oxidase polypeptide 7B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=18.76 E-value=2.7e+02 Score=20.56 Aligned_cols=43 Identities=12% Similarity=0.206 Sum_probs=26.7
Q ss_pred HhhChhhhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCccccCCCC
Q 044241 285 YRKYKAWWARHTYILSGALDAGIAFMGVVIYFALQNYDNFGPNWWGLDSG 334 (356)
Q Consensus 285 rr~~~~w~~kYnyvlaagL~~G~~i~~vii~fa~~~~~~~~~~WwG~n~~ 334 (356)
+|+.|...+||.-.+ |.+|..+...+..+.+.-.|+ . |++.++
T Consensus 27 ~k~~pdFHdKYGn~~---L~~Ga~FC~a~W~y~~TQ~GI-e---WnlSPV 69 (80)
T 2y69_K 27 QKRAPDFHDKYGNAV---LASGATFCVAVWVYMATQIGI-E---WNPSPV 69 (80)
T ss_dssp ---CCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHSCC-C---CCCCCT
T ss_pred ccCCCchhhhcCcee---eecchhHHHhhHHHhheecce-e---ecCCcc
Confidence 456678899998543 566777777777666665666 3 663443
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=17.61 E-value=1.3e+02 Score=20.81 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=8.4
Q ss_pred CCCCChHHHHHHHHH
Q 044241 29 YDSVPGWWFHAVLVV 43 (356)
Q Consensus 29 Y~evP~wwy~~~~~~ 43 (356)
+.++|.|......+.
T Consensus 4 ~~~vp~WiIi~svl~ 18 (54)
T 2l8s_A 4 PGRVPLWVILLSAFA 18 (54)
T ss_dssp CCCCCTHHHHHHHHH
T ss_pred CccCchHHHHHHHHH
Confidence 456777766544443
No 8
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=16.03 E-value=2.8e+02 Score=19.07 Aligned_cols=43 Identities=12% Similarity=0.206 Sum_probs=25.2
Q ss_pred HhhChhhhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCccccCCCC
Q 044241 285 YRKYKAWWARHTYILSGALDAGIAFMGVVIYFALQNYDNFGPNWWGLDSG 334 (356)
Q Consensus 285 rr~~~~w~~kYnyvlaagL~~G~~i~~vii~fa~~~~~~~~~~WwG~n~~ 334 (356)
+|+.|...+||.-.+ |.+|..+...+-.+.+.-.|+ . |++.++
T Consensus 3 ~k~~p~FHdKYGn~~---L~~Ga~FC~a~W~y~~TQ~GI-e---WnlSPV 45 (56)
T 1v54_K 3 QKRAPDFHDKYGNAV---LASGATFCVAVWVYMATQIGI-E---WNPSPV 45 (56)
T ss_dssp ---CCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHSCC-C---CCCCCT
T ss_pred cccCcchhhhcCcee---eecchhhhHhhHhhhheeece-e---eccCcc
Confidence 456677889997443 456777776666665555555 3 653443
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=15.98 E-value=82 Score=20.85 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhChh
Q 044241 274 GVVGIFFNYYIYRKYKA 290 (356)
Q Consensus 274 ~~vG~~~~~~~rr~~~~ 290 (356)
.+++....+|+|||+.+
T Consensus 24 ~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 24 VIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 35556667888888754
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=15.46 E-value=83 Score=20.77 Aligned_cols=17 Identities=18% Similarity=0.215 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhhChh
Q 044241 274 GVVGIFFNYYIYRKYKA 290 (356)
Q Consensus 274 ~~vG~~~~~~~rr~~~~ 290 (356)
.++++...+|+|||+.+
T Consensus 25 ~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 25 LVVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHhhhhHhh
Confidence 34556667888888754
Done!